Query 008260
Match_columns 572
No_of_seqs 521 out of 3209
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 21:59:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xn4_A Kelch-like protein 2; s 100.0 1.4E-39 4.9E-44 330.1 34.5 248 165-456 30-283 (302)
2 3ii7_A Kelch-like protein 7; p 100.0 1.9E-39 6.4E-44 329.8 33.1 262 164-469 23-293 (306)
3 1zgk_A Kelch-like ECH-associat 100.0 3.3E-39 1.1E-43 328.7 33.2 248 164-456 38-294 (308)
4 4asc_A Kelch repeat and BTB do 100.0 2.3E-39 8E-44 330.8 28.3 252 162-455 10-283 (315)
5 2vpj_A Kelch-like protein 12; 100.0 2.1E-38 7.1E-43 321.2 32.3 247 165-456 31-285 (301)
6 2woz_A Kelch repeat and BTB do 100.0 1.1E-38 3.8E-43 326.2 30.4 256 158-455 17-293 (318)
7 1zgk_A Kelch-like ECH-associat 100.0 6.3E-37 2.2E-41 311.8 26.7 234 181-456 10-247 (308)
8 2uvk_A YJHT; unknown function, 100.0 3.2E-36 1.1E-40 312.8 26.1 247 171-457 43-350 (357)
9 3ii7_A Kelch-like protein 7; p 100.0 7.9E-35 2.7E-39 295.7 29.8 217 195-456 11-232 (306)
10 2vpj_A Kelch-like protein 12; 100.0 1.4E-34 4.6E-39 293.1 30.4 223 193-457 12-239 (301)
11 2xn4_A Kelch-like protein 2; s 100.0 9.6E-35 3.3E-39 294.5 28.6 225 190-457 10-237 (302)
12 2uvk_A YJHT; unknown function, 100.0 4.1E-34 1.4E-38 296.8 26.8 236 181-457 5-302 (357)
13 4asc_A Kelch repeat and BTB do 100.0 1E-34 3.5E-39 296.3 20.9 210 171-409 77-298 (315)
14 2woz_A Kelch repeat and BTB do 100.0 2.8E-34 9.7E-39 293.4 23.0 210 171-409 88-308 (318)
15 2zwa_A Leucine carboxyl methyl 100.0 1.5E-33 5E-38 317.7 28.6 244 172-454 378-640 (695)
16 2zwa_A Leucine carboxyl methyl 100.0 9.3E-33 3.2E-37 311.2 26.4 250 165-449 412-694 (695)
17 1hbk_A ACBP, acyl-COA binding 100.0 3.1E-31 1E-35 214.8 8.2 88 12-107 2-89 (89)
18 2cop_A Acyl-coenzyme A binding 100.0 8.3E-31 2.8E-35 219.3 9.8 95 7-111 3-97 (109)
19 1st7_A ACBP, acyl-COA-binding 100.0 2.9E-31 1E-35 213.5 5.7 85 12-106 1-85 (86)
20 3epy_A Acyl-COA-binding domain 100.0 4E-31 1.4E-35 213.1 6.2 86 11-106 3-88 (89)
21 2cqu_A Peroxisomal D3,D2-enoyl 100.0 3.3E-30 1.1E-34 216.9 9.3 90 12-111 16-105 (116)
22 2lbb_A Acyl COA binding protei 100.0 1.7E-30 5.8E-35 211.0 5.5 84 14-107 12-96 (96)
23 2cb8_A Acyl-COA-binding protei 100.0 3.5E-30 1.2E-34 207.1 6.6 84 13-106 3-86 (87)
24 3fp5_A Acyl-COA binding protei 100.0 2.2E-29 7.6E-34 208.6 7.1 89 10-104 2-90 (106)
25 2wh5_A Acyl-COA-binding domain 100.0 1.3E-29 4.5E-34 210.3 5.2 94 10-109 6-99 (106)
26 3flv_A Acyl-COA-binding domain 100.0 3.6E-29 1.2E-33 210.2 5.5 90 11-106 23-112 (119)
27 1k3i_A Galactose oxidase precu 100.0 4.3E-27 1.5E-31 264.0 24.2 243 171-456 176-504 (656)
28 1k3i_A Galactose oxidase precu 99.9 2.6E-26 8.8E-31 257.7 22.5 242 166-448 220-548 (656)
29 3mbr_X Glutamine cyclotransfer 98.0 0.0029 9.8E-08 60.7 24.1 164 185-388 20-184 (243)
30 3dsm_A Uncharacterized protein 97.9 0.0076 2.6E-07 60.5 27.8 208 183-452 41-256 (328)
31 1mix_A Talin; focal adhesion, 97.8 3.8E-05 1.3E-09 72.4 7.1 81 15-106 21-115 (206)
32 3nol_A Glutamine cyclotransfer 97.6 0.01 3.5E-07 57.4 21.9 161 187-388 44-206 (262)
33 3nok_A Glutaminyl cyclase; bet 97.5 0.0089 3.1E-07 57.9 20.2 159 187-388 56-215 (268)
34 3dsm_A Uncharacterized protein 97.5 0.028 9.6E-07 56.2 25.0 208 189-449 87-302 (328)
35 2iwa_A Glutamine cyclotransfer 97.5 0.036 1.2E-06 53.9 24.0 203 189-449 24-237 (266)
36 3mbr_X Glutamine cyclotransfer 97.1 0.059 2E-06 51.5 19.8 158 246-450 21-180 (243)
37 1l0q_A Surface layer protein; 97.0 0.044 1.5E-06 55.4 19.4 184 196-450 2-190 (391)
38 3jrp_A Fusion protein of prote 96.8 0.19 6.5E-06 50.0 22.4 195 195-450 22-241 (379)
39 2ovr_B FBW7, F-BOX/WD repeat p 96.7 0.32 1.1E-05 50.2 24.2 159 252-450 285-443 (445)
40 3bws_A Protein LP49; two-domai 96.7 0.13 4.4E-06 52.7 20.8 144 212-389 102-249 (433)
41 1l0q_A Surface layer protein; 96.5 0.17 5.7E-06 51.1 19.5 188 195-451 85-277 (391)
42 3nol_A Glutamine cyclotransfer 96.5 0.14 5E-06 49.3 17.6 115 248-387 45-159 (262)
43 4ery_A WD repeat-containing pr 96.3 0.84 2.9E-05 44.3 24.2 191 195-451 76-270 (312)
44 1gxr_A ESG1, transducin-like e 96.3 0.39 1.3E-05 46.7 20.8 190 195-452 108-299 (337)
45 3vgz_A Uncharacterized protein 96.1 1.1 3.9E-05 43.8 25.0 203 195-452 52-265 (353)
46 1p22_A F-BOX/WD-repeat protein 96.1 0.44 1.5E-05 49.1 20.7 187 192-450 139-326 (435)
47 3vgz_A Uncharacterized protein 96.1 1.2 4.1E-05 43.6 24.3 202 195-452 100-306 (353)
48 3bws_A Protein LP49; two-domai 95.9 0.74 2.5E-05 46.9 21.4 154 195-388 180-339 (433)
49 2hqs_A Protein TOLB; TOLB, PAL 95.9 0.35 1.2E-05 49.9 18.8 197 195-450 189-388 (415)
50 1k8k_C P40, ARP2/3 complex 41 95.9 1.1 3.6E-05 44.3 22.0 151 195-382 19-172 (372)
51 3jro_A Fusion protein of prote 95.8 0.55 1.9E-05 52.6 20.9 107 195-333 20-133 (753)
52 4aez_A CDC20, WD repeat-contai 95.8 0.91 3.1E-05 46.1 21.0 136 211-387 113-252 (401)
53 2hqs_A Protein TOLB; TOLB, PAL 95.7 1.1 3.6E-05 46.1 21.6 202 195-452 143-347 (415)
54 3q7m_A Lipoprotein YFGL, BAMB; 95.7 2 6.9E-05 43.0 25.2 161 189-389 47-215 (376)
55 3jrp_A Fusion protein of prote 95.7 0.29 9.9E-06 48.6 16.4 149 196-384 69-241 (379)
56 4ery_A WD repeat-containing pr 95.6 1.7 5.9E-05 41.9 23.8 189 195-451 34-225 (312)
57 1p22_A F-BOX/WD-repeat protein 95.5 1.4 4.7E-05 45.2 21.4 187 193-450 180-366 (435)
58 1gxr_A ESG1, transducin-like e 95.5 0.92 3.2E-05 43.9 19.2 149 255-451 108-257 (337)
59 3fm0_A Protein CIAO1; WDR39,SG 95.5 0.95 3.3E-05 45.0 19.5 157 195-389 27-187 (345)
60 2z2n_A Virginiamycin B lyase; 95.4 1.9 6.4E-05 41.0 21.0 151 195-390 67-219 (299)
61 2iwa_A Glutamine cyclotransfer 95.4 2.1 7.3E-05 41.2 21.7 156 249-450 24-182 (266)
62 3ow8_A WD repeat-containing pr 95.3 2.1 7.3E-05 41.9 21.4 147 255-450 91-238 (321)
63 3nok_A Glutaminyl cyclase; bet 95.3 0.48 1.7E-05 45.7 15.7 114 247-388 56-169 (268)
64 2ovr_B FBW7, F-BOX/WD repeat p 95.3 3 0.0001 42.7 23.3 151 251-452 244-394 (445)
65 3v9f_A Two-component system se 95.3 0.61 2.1E-05 52.4 19.2 185 211-449 469-656 (781)
66 3u4y_A Uncharacterized protein 95.3 0.95 3.3E-05 44.1 18.4 145 195-383 9-160 (331)
67 2qc5_A Streptogramin B lactona 95.2 2.2 7.5E-05 40.5 20.5 151 195-390 30-182 (300)
68 3ow8_A WD repeat-containing pr 95.2 2.6 9E-05 41.3 22.5 149 195-387 133-283 (321)
69 4aez_A CDC20, WD repeat-contai 95.2 0.86 2.9E-05 46.2 18.3 153 255-452 228-383 (401)
70 2aq5_A Coronin-1A; WD40 repeat 95.1 2.1 7.2E-05 43.2 21.2 154 257-451 145-301 (402)
71 3q7m_A Lipoprotein YFGL, BAMB; 95.1 3 0.0001 41.6 25.5 150 191-389 139-304 (376)
72 1kb0_A Quinohemoprotein alcoho 95.1 5.2 0.00018 44.0 26.2 132 189-339 71-208 (677)
73 2ojh_A Uncharacterized protein 95.0 0.89 3E-05 42.9 16.9 158 195-390 52-213 (297)
74 1q7f_A NHL, brain tumor CG1071 94.9 2.7 9.4E-05 39.9 23.4 197 195-450 40-239 (286)
75 1rwi_B Serine/threonine-protei 94.8 2.1 7.3E-05 40.1 18.9 187 195-450 34-223 (270)
76 1pjx_A Dfpase, DIISOPROPYLFLUO 94.8 2.8 9.7E-05 40.2 20.2 163 195-386 28-211 (314)
77 2qc5_A Streptogramin B lactona 94.7 2.9 0.0001 39.6 20.7 156 189-389 65-223 (300)
78 3ei3_B DNA damage-binding prot 94.7 3.1 0.00011 41.4 20.9 146 197-383 87-236 (383)
79 3dwl_C Actin-related protein 2 94.6 0.19 6.4E-06 50.4 11.2 152 195-384 22-178 (377)
80 1r5m_A SIR4-interacting protei 94.6 1.1 3.9E-05 44.8 17.2 151 191-385 212-363 (425)
81 1k8k_C P40, ARP2/3 complex 41 94.5 1.7 5.7E-05 42.8 18.2 155 195-387 63-237 (372)
82 4g56_B MGC81050 protein; prote 94.5 0.38 1.3E-05 48.3 13.4 189 195-450 150-344 (357)
83 3u4y_A Uncharacterized protein 94.4 2 6.7E-05 41.8 18.2 194 196-452 52-255 (331)
84 3hfq_A Uncharacterized protein 94.4 2.3 8E-05 41.7 18.9 163 195-389 50-226 (347)
85 4gqb_B Methylosome protein 50; 94.4 1.6 5.5E-05 43.5 17.7 150 195-389 138-295 (344)
86 1got_B GT-beta; complex (GTP-b 94.4 2.7 9.2E-05 41.4 19.2 189 195-451 66-259 (340)
87 3g4e_A Regucalcin; six bladed 94.3 3 0.0001 40.3 19.1 159 187-386 14-185 (297)
88 1yiq_A Quinohemoprotein alcoho 94.3 7.8 0.00027 42.7 27.2 131 189-338 64-200 (689)
89 2z3z_A Dipeptidyl aminopeptida 94.3 3.5 0.00012 45.1 21.8 155 211-390 235-398 (706)
90 3v7d_B Cell division control p 94.3 5.5 0.00019 40.8 22.2 104 306-450 279-382 (464)
91 3v7d_B Cell division control p 94.3 4.9 0.00017 41.1 21.7 147 195-388 279-426 (464)
92 1rwi_B Serine/threonine-protei 94.3 2.5 8.4E-05 39.7 18.0 153 189-386 70-225 (270)
93 1ri6_A Putative isomerase YBHE 94.2 2.7 9.4E-05 40.6 18.8 153 196-387 50-215 (343)
94 1r5m_A SIR4-interacting protei 94.2 2.2 7.5E-05 42.7 18.5 146 255-450 216-362 (425)
95 4gqb_B Methylosome protein 50; 94.2 1.8 6.1E-05 43.2 17.5 107 255-385 138-248 (344)
96 3hfq_A Uncharacterized protein 94.1 3.3 0.00011 40.6 19.2 149 212-389 19-178 (347)
97 2z2n_A Virginiamycin B lyase; 94.0 4.2 0.00014 38.5 23.0 150 195-389 25-176 (299)
98 3jro_A Fusion protein of prote 93.6 0.76 2.6E-05 51.4 14.8 150 196-384 67-239 (753)
99 2ojh_A Uncharacterized protein 93.6 4.7 0.00016 37.7 20.5 145 210-390 21-169 (297)
100 4e54_B DNA damage-binding prot 93.6 1.2 4.2E-05 45.7 15.4 110 255-385 131-242 (435)
101 2ad6_A Methanol dehydrogenase 93.6 8.2 0.00028 41.5 22.4 128 189-339 56-194 (571)
102 1q7f_A NHL, brain tumor CG1071 93.5 5.2 0.00018 37.9 23.7 162 189-390 80-245 (286)
103 1got_B GT-beta; complex (GTP-b 93.5 6.3 0.00021 38.7 21.9 148 255-450 154-302 (340)
104 3zwl_B Eukaryotic translation 93.5 2.9 9.8E-05 40.8 17.4 152 195-383 43-206 (369)
105 4f7g_A Talin-1; alpha-helix bu 93.4 0.13 4.6E-06 48.4 6.9 69 36-105 43-125 (222)
106 1sq9_A Antiviral protein SKI8; 93.3 5.5 0.00019 39.5 19.6 111 257-388 82-221 (397)
107 4a2l_A BT_4663, two-component 93.2 3.2 0.00011 46.5 19.2 157 211-401 471-632 (795)
108 3ju4_A Endo-N-acetylneuraminid 93.1 4.3 0.00015 41.0 17.1 182 171-367 270-481 (670)
109 4e54_B DNA damage-binding prot 93.1 1.2 4.1E-05 45.8 14.3 149 195-385 131-284 (435)
110 3vl1_A 26S proteasome regulato 93.0 7.5 0.00026 38.9 20.2 192 195-451 108-324 (420)
111 1jmx_B Amine dehydrogenase; ox 93.0 4.5 0.00015 39.2 18.0 25 196-225 55-79 (349)
112 1jmx_B Amine dehydrogenase; ox 92.9 3.2 0.00011 40.3 16.7 159 195-388 10-180 (349)
113 3e5z_A Putative gluconolactona 92.9 6.7 0.00023 37.4 20.0 152 196-386 40-206 (296)
114 3mkq_A Coatomer beta'-subunit; 92.8 3.4 0.00012 45.9 18.6 150 195-387 66-221 (814)
115 1kv9_A Type II quinohemoprotei 92.8 14 0.00046 40.6 24.9 131 188-338 59-195 (668)
116 2hes_X YDR267CP; beta-propelle 92.4 5.4 0.00018 39.0 17.5 156 195-389 118-286 (330)
117 3fm0_A Protein CIAO1; WDR39,SG 92.2 1.8 6.2E-05 42.8 13.8 110 255-384 27-137 (345)
118 1pby_B Quinohemoprotein amine 92.2 3.6 0.00012 39.6 15.8 92 324-451 220-312 (337)
119 1vyh_C Platelet-activating fac 92.2 7.3 0.00025 39.5 18.8 149 196-388 120-270 (410)
120 3zwl_B Eukaryotic translation 92.2 4.1 0.00014 39.7 16.4 111 255-386 186-307 (369)
121 3vl1_A 26S proteasome regulato 92.0 11 0.00036 37.7 21.7 66 306-385 258-324 (420)
122 1pjx_A Dfpase, DIISOPROPYLFLUO 92.0 5.9 0.0002 37.9 17.1 156 196-385 83-258 (314)
123 3no2_A Uncharacterized protein 92.0 8.9 0.0003 36.7 19.1 154 191-389 43-203 (276)
124 4g56_B MGC81050 protein; prote 92.0 1.7 5.9E-05 43.4 13.5 153 255-451 105-260 (357)
125 1ri6_A Putative isomerase YBHE 91.9 9.2 0.00031 36.7 19.9 162 195-390 140-317 (343)
126 3qij_A Protein 4.1; cytoskelet 91.8 0.13 4.4E-06 50.9 4.6 70 36-106 124-205 (296)
127 1ef1_A Moesin; membrane, FERM 91.8 0.18 6E-06 49.7 5.5 69 37-106 111-199 (294)
128 2xbg_A YCF48-like protein; pho 91.8 11 0.00036 37.1 21.1 174 171-391 109-287 (327)
129 3v9f_A Two-component system se 91.7 9.8 0.00033 42.4 20.5 196 195-454 417-616 (781)
130 1h4r_A Merlin; FERM, neurofibr 91.6 0.19 6.4E-06 50.0 5.6 68 37-105 131-218 (314)
131 3odt_A Protein DOA1; ubiquitin 91.6 9.4 0.00032 36.1 21.0 147 255-454 154-301 (313)
132 3c5m_A Oligogalacturonate lyas 91.5 7.3 0.00025 38.5 17.7 153 211-390 168-336 (396)
133 4a2l_A BT_4663, two-component 91.5 20 0.00069 39.9 27.2 151 195-390 98-251 (795)
134 4a11_B DNA excision repair pro 91.5 2.8 9.6E-05 41.7 14.5 104 255-384 111-219 (408)
135 1qhu_A Protein (hemopexin); be 91.5 3.1 0.00011 43.4 14.9 59 195-282 158-216 (460)
136 1nir_A Nitrite reductase; hemo 91.4 9.4 0.00032 40.7 19.3 202 189-449 182-402 (543)
137 2dg1_A DRP35, lactonase; beta 91.4 2.8 9.7E-05 40.8 14.1 156 195-383 55-213 (333)
138 2pbi_B Guanine nucleotide-bind 91.4 12 0.00041 36.9 19.6 107 255-385 209-317 (354)
139 2ghs_A AGR_C_1268P; regucalcin 91.3 12 0.00039 36.7 20.3 146 195-382 60-209 (326)
140 2dg1_A DRP35, lactonase; beta 91.0 3.6 0.00012 40.0 14.4 121 255-389 55-177 (333)
141 4aow_A Guanine nucleotide-bind 91.0 6.5 0.00022 37.8 16.3 150 195-387 97-250 (340)
142 3dwl_C Actin-related protein 2 91.0 0.49 1.7E-05 47.2 8.0 109 255-385 22-133 (377)
143 4gga_A P55CDC, cell division c 90.9 11 0.00036 38.2 18.4 135 212-384 126-262 (420)
144 3ei3_B DNA damage-binding prot 90.9 6.4 0.00022 39.0 16.5 112 257-389 87-200 (383)
145 4a11_B DNA excision repair pro 90.9 3 0.0001 41.5 13.9 153 195-386 111-279 (408)
146 3mkq_A Coatomer beta'-subunit; 90.8 5.9 0.0002 43.9 17.6 147 195-385 24-174 (814)
147 1pgu_A Actin interacting prote 90.8 8.4 0.00029 40.7 18.2 153 255-451 77-240 (615)
148 3pe7_A Oligogalacturonate lyas 90.7 7 0.00024 38.7 16.6 158 211-391 168-337 (388)
149 2xdw_A Prolyl endopeptidase; a 90.6 16 0.00054 40.1 20.6 170 195-390 135-330 (710)
150 2ecf_A Dipeptidyl peptidase IV 90.6 5.6 0.00019 43.7 16.9 127 195-340 47-189 (741)
151 1pex_A Collagenase-3, MMP-13; 90.5 10 0.00036 34.8 16.7 156 190-388 28-197 (207)
152 4aow_A Guanine nucleotide-bind 90.3 13 0.00045 35.6 18.2 104 256-386 185-289 (340)
153 2pm7_B Protein transport prote 90.2 12 0.00041 35.7 17.3 64 256-333 67-133 (297)
154 3ivf_A Talin-1; FERM domain, c 90.1 0.49 1.7E-05 48.2 7.2 66 36-101 197-276 (371)
155 2z3z_A Dipeptidyl aminopeptida 90.1 23 0.0008 38.4 21.5 155 270-451 233-393 (706)
156 3i2n_A WD repeat-containing pr 90.1 12 0.00041 36.1 17.4 154 196-388 31-204 (357)
157 2ynn_A Coatomer subunit beta'; 90.0 14 0.00048 35.4 18.6 191 195-451 66-261 (304)
158 3fvz_A Peptidyl-glycine alpha- 89.9 15 0.00052 35.7 24.5 149 211-388 69-232 (329)
159 1erj_A Transcriptional repress 89.9 12 0.0004 37.6 17.5 149 195-384 134-288 (393)
160 3scy_A Hypothetical bacterial 89.8 16 0.00054 35.8 22.1 115 197-333 14-130 (361)
161 3bg1_A Protein SEC13 homolog; 89.4 7.8 0.00027 37.5 15.3 113 195-338 24-143 (316)
162 3e5z_A Putative gluconolactona 89.4 15 0.00051 34.9 20.7 159 195-390 79-253 (296)
163 3azo_A Aminopeptidase; POP fam 89.3 8.9 0.0003 41.4 17.1 155 210-390 160-332 (662)
164 2pm9_A Protein WEB1, protein t 89.3 6.1 0.00021 39.4 14.8 113 255-388 78-202 (416)
165 2xyi_A Probable histone-bindin 89.3 9.7 0.00033 38.7 16.5 110 256-384 141-264 (430)
166 3g4e_A Regucalcin; six bladed 89.1 8.9 0.0003 36.8 15.3 160 195-387 64-233 (297)
167 1vyh_C Platelet-activating fac 89.1 7 0.00024 39.6 15.2 147 255-450 119-266 (410)
168 3odt_A Protein DOA1; ubiquitin 89.0 15 0.00052 34.5 18.1 144 194-382 27-173 (313)
169 1qks_A Cytochrome CD1 nitrite 88.9 27 0.00093 37.3 20.9 73 322-402 319-393 (567)
170 2pm9_A Protein WEB1, protein t 88.8 5.4 0.00019 39.8 14.0 113 256-384 126-250 (416)
171 1nir_A Nitrite reductase; hemo 88.8 19 0.00066 38.2 18.9 148 272-451 302-460 (543)
172 3k26_A Polycomb protein EED; W 88.6 16 0.00053 35.3 17.0 142 273-450 45-193 (366)
173 3scy_A Hypothetical bacterial 88.3 20 0.00069 35.0 23.5 34 352-390 215-249 (361)
174 1yfq_A Cell cycle arrest prote 88.1 19 0.00065 34.5 17.9 104 255-383 67-179 (342)
175 3pe7_A Oligogalacturonate lyas 88.0 21 0.00073 35.0 18.6 167 195-390 46-232 (388)
176 3dr2_A Exported gluconolactona 87.9 20 0.00067 34.4 17.2 156 195-385 56-226 (305)
177 1kb0_A Quinohemoprotein alcoho 87.7 24 0.00083 38.6 19.3 122 252-389 74-207 (677)
178 3bg1_A Protein SEC13 homolog; 87.7 10 0.00036 36.6 14.8 69 196-287 71-143 (316)
179 3dm0_A Maltose-binding peripla 87.6 22 0.00076 38.6 19.0 150 195-386 441-595 (694)
180 4h5i_A Guanine nucleotide-exch 87.6 23 0.0008 35.0 20.0 184 212-450 158-344 (365)
181 3ott_A Two-component system se 87.5 29 0.00099 38.3 20.1 159 195-390 383-552 (758)
182 2pbi_B Guanine nucleotide-bind 87.1 24 0.00083 34.6 17.6 149 255-450 165-316 (354)
183 2xdw_A Prolyl endopeptidase; a 87.1 38 0.0013 36.9 25.1 153 210-389 207-375 (710)
184 2ynn_A Coatomer subunit beta'; 87.0 22 0.00075 34.0 17.7 148 195-384 24-173 (304)
185 3lrv_A PRE-mRNA-splicing facto 86.9 24 0.0008 34.3 21.2 67 306-386 138-204 (343)
186 3sfz_A APAF-1, apoptotic pepti 86.9 4.6 0.00016 47.5 13.6 189 195-451 972-1160(1249)
187 3azo_A Aminopeptidase; POP fam 86.8 14 0.00048 39.8 16.7 150 211-390 217-376 (662)
188 2pm7_B Protein transport prote 86.4 23 0.00079 33.6 17.4 63 196-282 67-133 (297)
189 4gga_A P55CDC, cell division c 86.3 23 0.00077 35.7 17.1 93 273-385 126-220 (420)
190 1sq9_A Antiviral protein SKI8; 86.2 9.8 0.00033 37.6 14.0 108 251-383 21-157 (397)
191 2aq5_A Coronin-1A; WD40 repeat 86.1 6 0.0002 39.7 12.4 112 255-388 93-212 (402)
192 2xyi_A Probable histone-bindin 86.0 11 0.00038 38.3 14.5 104 258-383 196-309 (430)
193 2ece_A 462AA long hypothetical 85.9 18 0.00061 37.6 15.6 179 195-390 95-296 (462)
194 1yfq_A Cell cycle arrest prote 85.8 25 0.00086 33.6 18.3 145 195-382 67-224 (342)
195 2i1j_A Moesin; FERM, coiled-co 85.6 0.87 3E-05 49.2 5.8 70 36-106 113-202 (575)
196 1yr2_A Prolyl oligopeptidase; 85.6 28 0.00095 38.4 18.5 169 195-390 173-359 (741)
197 2bkl_A Prolyl endopeptidase; m 85.6 32 0.0011 37.5 18.9 166 195-389 178-357 (695)
198 3lrv_A PRE-mRNA-splicing facto 85.3 18 0.00063 35.1 15.3 152 255-452 47-204 (343)
199 3no2_A Uncharacterized protein 85.3 26 0.00089 33.3 20.1 186 195-450 4-196 (276)
200 3au4_A Myosin-X; protein-prote 85.3 1.2 3.9E-05 48.1 6.7 82 15-107 324-452 (555)
201 3hrp_A Uncharacterized protein 85.1 35 0.0012 34.6 18.0 153 255-450 141-299 (409)
202 1w6s_A Methanol dehydrogenase 85.0 46 0.0016 35.9 23.7 129 189-339 56-200 (599)
203 1pgu_A Actin interacting prote 84.7 42 0.0014 35.1 22.9 105 256-384 456-573 (615)
204 3i2n_A WD repeat-containing pr 84.6 29 0.00099 33.2 17.2 104 255-383 179-291 (357)
205 1pby_B Quinohemoprotein amine 84.5 22 0.00076 33.7 15.3 107 273-388 12-129 (337)
206 3ott_A Two-component system se 84.4 7 0.00024 43.4 12.9 110 255-389 482-592 (758)
207 1itv_A MMP9; adaptive molecula 84.3 24 0.00081 32.0 15.8 152 250-451 11-176 (195)
208 2ad6_A Methanol dehydrogenase 84.0 38 0.0013 36.1 18.1 122 252-389 59-193 (571)
209 1erj_A Transcriptional repress 83.4 29 0.00098 34.6 16.1 107 255-387 134-242 (393)
210 1yr2_A Prolyl oligopeptidase; 83.3 22 0.00077 39.1 16.4 149 210-390 293-448 (741)
211 1gen_A Gelatinase A; hydrolase 83.0 29 0.00099 32.0 15.5 156 190-385 35-204 (218)
212 3k26_A Polycomb protein EED; W 83.0 34 0.0012 32.8 16.3 108 256-385 85-194 (366)
213 3dm0_A Maltose-binding peripla 82.5 59 0.002 35.2 19.5 150 255-451 441-594 (694)
214 1qks_A Cytochrome CD1 nitrite 82.5 56 0.0019 34.9 19.2 146 211-384 320-478 (567)
215 2ghs_A AGR_C_1268P; regucalcin 82.2 38 0.0013 32.8 18.3 113 255-389 60-174 (326)
216 3iz6_a 40S ribosomal protein R 81.7 43 0.0015 33.1 23.0 111 255-387 217-333 (380)
217 3fvz_A Peptidyl-glycine alpha- 81.4 40 0.0014 32.6 26.7 213 190-449 95-322 (329)
218 1flg_A Protein (quinoprotein e 81.3 61 0.0021 34.6 26.5 124 189-338 62-201 (582)
219 3c5m_A Oligogalacturonate lyas 81.2 14 0.00049 36.3 12.7 111 271-390 167-280 (396)
220 2hes_X YDR267CP; beta-propelle 81.0 41 0.0014 32.4 22.2 159 193-389 22-190 (330)
221 3gre_A Serine/threonine-protei 80.9 31 0.0011 34.5 15.4 111 255-387 181-296 (437)
222 2vdu_B TRNA (guanine-N(7)-)-me 80.6 51 0.0018 33.3 22.7 110 255-387 160-275 (450)
223 1npe_A Nidogen, entactin; glyc 80.5 37 0.0013 31.6 25.0 195 189-451 39-240 (267)
224 2vdu_B TRNA (guanine-N(7)-)-me 80.3 40 0.0014 34.1 16.1 159 196-387 210-397 (450)
225 3mmy_A MRNA export factor; mRN 80.2 23 0.00078 34.1 13.6 106 256-385 54-162 (368)
226 1qhu_A Protein (hemopexin); be 80.1 59 0.002 33.7 18.5 58 255-332 158-215 (460)
227 1pex_A Collagenase-3, MMP-13; 80.0 36 0.0012 31.1 17.0 111 250-385 28-147 (207)
228 2xbg_A YCF48-like protein; pho 80.0 46 0.0016 32.4 22.4 185 171-406 25-212 (327)
229 2ecf_A Dipeptidyl peptidase IV 79.7 73 0.0025 34.5 20.5 110 272-389 263-374 (741)
230 2bkl_A Prolyl endopeptidase; m 79.5 39 0.0013 36.8 16.5 178 195-390 79-268 (695)
231 3iuj_A Prolyl endopeptidase; h 78.4 56 0.0019 35.6 17.4 148 211-391 259-413 (693)
232 3iz6_a 40S ribosomal protein R 78.2 55 0.0019 32.2 17.4 111 255-383 260-375 (380)
233 3iuj_A Prolyl endopeptidase; h 76.6 91 0.0031 33.9 20.6 167 195-390 139-324 (693)
234 2fp8_A Strictosidine synthase; 76.6 55 0.0019 31.4 19.4 169 189-390 83-276 (322)
235 1su3_A Interstitial collagenas 76.5 74 0.0025 32.8 16.8 159 190-389 267-438 (450)
236 2ymu_A WD-40 repeat protein; u 75.7 60 0.002 33.8 16.2 107 255-388 437-544 (577)
237 4dxa_B KREV interaction trappe 75.3 1.4 4.9E-05 43.8 2.9 66 36-101 128-218 (322)
238 2ymu_A WD-40 repeat protein; u 74.4 85 0.0029 32.5 17.4 107 255-388 396-503 (577)
239 3sfz_A APAF-1, apoptotic pepti 73.4 41 0.0014 39.2 15.4 109 255-388 626-737 (1249)
240 1w6s_A Methanol dehydrogenase 73.4 67 0.0023 34.5 15.9 124 251-389 58-199 (599)
241 3dr2_A Exported gluconolactona 73.2 64 0.0022 30.6 16.7 166 195-390 96-274 (305)
242 1flg_A Protein (quinoprotein e 73.2 97 0.0033 33.0 17.1 119 252-388 65-200 (582)
243 1n7d_A LDL receptor, low-densi 73.1 85 0.0029 34.4 16.9 149 254-450 463-615 (699)
244 1xfd_A DIP, dipeptidyl aminope 73.0 87 0.003 33.7 17.1 111 212-340 38-151 (723)
245 3ju4_A Endo-N-acetylneuraminid 72.8 85 0.0029 31.8 26.3 190 241-450 279-515 (670)
246 3ba0_A Macrophage metalloelast 71.8 85 0.0029 31.4 17.6 159 190-389 185-356 (365)
247 3f3f_A Nucleoporin SEH1; struc 71.4 67 0.0023 30.1 23.0 108 195-334 22-145 (351)
248 4ggc_A P55CDC, cell division c 71.4 67 0.0023 30.0 20.6 136 211-384 45-182 (318)
249 3o4h_A Acylamino-acid-releasin 71.3 1E+02 0.0036 32.2 17.8 115 256-390 75-191 (582)
250 1yiq_A Quinohemoprotein alcoho 71.2 1.2E+02 0.0042 33.0 21.0 123 252-389 67-200 (689)
251 1gen_A Gelatinase A; hydrolase 70.5 66 0.0023 29.6 17.1 154 250-450 35-203 (218)
252 3mmy_A MRNA export factor; mRN 69.8 78 0.0027 30.1 22.0 143 196-385 54-201 (368)
253 3b7f_A Glycosyl hydrolase, BNR 69.7 92 0.0031 30.9 18.7 187 171-390 43-269 (394)
254 3hrp_A Uncharacterized protein 69.6 97 0.0033 31.2 25.3 153 195-384 141-299 (409)
255 1itv_A MMP9; adaptive molecula 68.1 69 0.0023 28.9 17.6 155 190-387 11-178 (195)
256 3f3f_A Nucleoporin SEH1; struc 68.0 79 0.0027 29.5 23.1 152 196-383 71-249 (351)
257 2al6_A Focal adhesion kinase 1 67.7 2.3 8E-05 43.2 2.5 68 38-106 131-224 (375)
258 1kv9_A Type II quinohemoprotei 67.7 55 0.0019 35.6 13.8 122 252-389 63-195 (668)
259 3frx_A Guanine nucleotide-bind 65.2 96 0.0033 29.5 21.2 145 195-385 76-229 (319)
260 3frx_A Guanine nucleotide-bind 65.1 97 0.0033 29.5 20.4 147 255-451 76-229 (319)
261 2fp8_A Strictosidine synthase; 64.9 64 0.0022 30.9 12.5 111 272-389 40-180 (322)
262 3kci_A Probable E3 ubiquitin-p 64.8 95 0.0032 31.0 14.1 19 349-367 222-240 (389)
263 3o4h_A Acylamino-acid-releasin 62.2 95 0.0032 32.5 14.2 110 255-387 121-231 (582)
264 4d9s_A UVB-resistance protein 61.0 1.4E+02 0.0048 29.9 16.0 20 348-367 337-356 (406)
265 2p4o_A Hypothetical protein; p 59.8 1.2E+02 0.0041 28.7 19.2 159 189-387 75-245 (306)
266 3c7x_A Matrix metalloproteinas 59.5 1E+02 0.0034 27.8 17.6 153 190-385 10-177 (196)
267 3b7f_A Glycosyl hydrolase, BNR 58.9 1.4E+02 0.0049 29.4 22.2 150 212-390 32-215 (394)
268 2mad_H Methylamine dehydrogena 57.6 1.5E+02 0.0052 29.3 14.8 72 306-388 278-355 (373)
269 3sjl_D Methylamine dehydrogena 54.7 68 0.0023 32.4 10.7 73 306-388 291-368 (386)
270 1k32_A Tricorn protease; prote 54.0 2E+02 0.0069 32.8 16.0 172 211-436 317-494 (1045)
271 4ggc_A P55CDC, cell division c 53.6 1.4E+02 0.0048 27.6 20.2 56 323-386 221-276 (318)
272 4h5i_A Guanine nucleotide-exch 53.4 1.7E+02 0.0057 28.5 18.4 112 254-382 229-342 (365)
273 1ck7_A Protein (gelatinase A); 51.0 98 0.0033 33.5 11.6 155 190-385 448-617 (631)
274 4eku_A Protein-tyrosine kinase 50.8 7.1 0.00024 39.8 2.6 70 38-108 151-246 (392)
275 3c7x_A Matrix metalloproteinas 50.8 1.4E+02 0.0048 26.8 15.7 153 250-450 10-176 (196)
276 3k6s_A Integrin alpha-X; cell 50.6 3.5E+02 0.012 31.3 20.0 190 247-450 335-542 (1095)
277 1npe_A Nidogen, entactin; glyc 50.2 1.5E+02 0.0052 27.1 22.4 156 189-388 82-243 (267)
278 2xzm_R RACK1; ribosome, transl 49.3 1.8E+02 0.0062 27.7 20.8 63 255-333 87-150 (343)
279 4d9s_A UVB-resistance protein 48.7 2.2E+02 0.0075 28.4 20.4 20 348-367 233-252 (406)
280 3hxj_A Pyrrolo-quinoline quino 48.4 1.8E+02 0.006 27.3 16.2 141 192-388 104-250 (330)
281 1hxn_A Hemopexin, HPX; heme, b 48.2 1.5E+02 0.005 27.2 11.0 145 194-383 27-197 (219)
282 3lp9_A LS-24; SEED albumin, pl 48.2 74 0.0025 29.4 9.0 62 306-384 129-202 (227)
283 3gre_A Serine/threonine-protei 48.0 2.1E+02 0.0073 28.1 17.9 152 195-385 181-361 (437)
284 2xe4_A Oligopeptidase B; hydro 47.6 2.5E+02 0.0086 30.7 14.9 119 254-390 329-465 (751)
285 2xzm_R RACK1; ribosome, transl 47.5 1.9E+02 0.0066 27.5 18.2 144 195-382 87-243 (343)
286 3pvl_A Myosin VIIA isoform 1; 46.6 17 0.00057 39.8 4.8 70 37-106 385-476 (655)
287 3m0c_C LDL receptor, low-densi 46.0 3.5E+02 0.012 30.0 26.1 133 254-413 481-617 (791)
288 2gop_A Trilobed protease; beta 45.3 2E+02 0.0069 27.1 18.1 101 271-389 151-257 (347)
289 3oyo_A Hemopexin fold protein 44.8 1.9E+02 0.0064 26.6 15.5 62 357-448 126-197 (225)
290 1nr0_A Actin interacting prote 44.6 3E+02 0.01 28.9 21.7 112 255-386 201-316 (611)
291 1su3_A Interstitial collagenas 43.3 2.9E+02 0.0099 28.3 17.1 111 250-385 267-387 (450)
292 3qhy_B Beta-lactamase inhibito 43.1 2.2E+02 0.0075 26.9 12.6 135 187-369 72-208 (282)
293 3ba0_A Macrophage metalloelast 42.3 2.7E+02 0.0091 27.6 17.2 111 250-385 185-304 (365)
294 2gop_A Trilobed protease; beta 42.2 2.3E+02 0.0077 26.8 12.9 147 208-390 40-214 (347)
295 3v65_B Low-density lipoprotein 41.4 2.7E+02 0.0093 27.5 24.9 155 189-384 119-278 (386)
296 2oiz_A Aromatic amine dehydrog 41.4 2.6E+02 0.0088 27.2 21.6 67 357-450 264-335 (361)
297 4a5s_A Dipeptidyl peptidase 4 40.8 1.8E+02 0.0063 31.6 12.4 69 211-288 36-108 (740)
298 3oyo_A Hemopexin fold protein 40.8 2.2E+02 0.0074 26.1 16.2 106 254-382 69-197 (225)
299 3tc9_A Hypothetical hydrolase; 40.6 3E+02 0.01 27.7 14.1 145 195-382 149-300 (430)
300 3dw8_B Serine/threonine-protei 38.9 2.9E+02 0.0098 27.0 16.0 194 195-449 39-315 (447)
301 3c75_H MADH, methylamine dehyd 38.2 1.9E+02 0.0064 29.5 11.1 122 195-336 84-213 (426)
302 2mad_H Methylamine dehydrogena 38.1 3E+02 0.01 27.0 25.6 73 357-453 277-354 (373)
303 1ck7_A Protein (gelatinase A); 37.3 1.8E+02 0.0062 31.3 11.1 111 250-385 448-568 (631)
304 3k6s_A Integrin alpha-X; cell 35.6 5.7E+02 0.02 29.5 19.5 191 184-386 332-545 (1095)
305 2oaj_A Protein SNI1; WD40 repe 35.2 5.2E+02 0.018 28.9 19.4 109 256-388 69-187 (902)
306 1n7d_A LDL receptor, low-densi 33.4 1.8E+02 0.0061 31.7 10.6 152 194-387 463-618 (699)
307 3v64_C Agrin; beta propeller, 32.9 3.5E+02 0.012 26.2 24.9 155 189-384 76-235 (349)
308 1xfd_A DIP, dipeptidyl aminope 32.3 3.2E+02 0.011 29.1 12.5 64 324-389 229-295 (723)
309 2p9w_A MAL S 1 allergenic prot 32.2 3.7E+02 0.013 26.3 13.3 141 255-434 147-304 (334)
310 2oiz_A Aromatic amine dehydrog 31.2 3.7E+02 0.013 26.0 19.1 120 196-335 16-143 (361)
311 3kci_A Probable E3 ubiquitin-p 31.2 3.9E+02 0.013 26.3 16.0 21 348-368 325-345 (389)
312 3vu4_A KMHSV2; beta-propeller 30.2 3.7E+02 0.013 25.7 22.3 30 353-387 201-231 (355)
313 2p4o_A Hypothetical protein; p 27.9 3.8E+02 0.013 25.0 19.7 114 247-384 33-148 (306)
314 2hz6_A Endoplasmic reticulum t 27.7 12 0.00041 37.5 -0.2 110 248-385 1-113 (369)
315 2oaj_A Protein SNI1; WD40 repe 26.8 7E+02 0.024 27.8 16.5 106 255-387 28-133 (902)
316 1nr0_A Actin interacting prote 26.3 5.7E+02 0.02 26.6 17.6 111 255-388 250-360 (611)
317 3m0c_C LDL receptor, low-densi 25.1 7.2E+02 0.025 27.4 20.7 147 195-384 482-633 (791)
318 3tc9_A Hypothetical hydrolase; 24.4 5.4E+02 0.019 25.7 15.4 109 255-389 149-263 (430)
319 1a12_A RCC1, regulator of chro 24.0 5.3E+02 0.018 25.4 16.0 20 349-368 346-365 (413)
320 1ijq_A LDL receptor, low-densi 22.5 4.9E+02 0.017 24.5 27.0 195 189-450 33-239 (316)
321 1z68_A Fibroblast activation p 22.5 3.4E+02 0.012 28.9 10.5 205 211-455 36-297 (719)
322 3sjl_D Methylamine dehydrogena 22.1 3.4E+02 0.012 27.2 9.4 72 195-286 291-368 (386)
323 3v65_B Low-density lipoprotein 21.7 5.7E+02 0.02 25.0 19.3 139 211-388 96-239 (386)
324 3c75_H MADH, methylamine dehyd 21.6 5.7E+02 0.019 25.8 11.2 72 255-337 330-407 (426)
325 3mvd_K Regulator of chromosome 21.4 6E+02 0.02 25.1 17.2 20 349-368 355-374 (423)
326 3hxj_A Pyrrolo-quinoline quino 21.3 4.8E+02 0.017 24.0 14.9 141 192-388 143-290 (330)
No 1
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=330.06 Aligned_cols=248 Identities=17% Similarity=0.302 Sum_probs=221.9
Q ss_pred ceeeec----ceEEecccCCCCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCC
Q 008260 165 GSVVVY----DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (572)
Q Consensus 165 ~~~~~~----~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (572)
..+.+| ++|..++ .+|.+|.+|++++++++|||+||..+...++++++||+.+++|+.++++
T Consensus 30 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~----------- 95 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM----------- 95 (302)
T ss_dssp CCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC-----------
T ss_pred CcEEEEcCcCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC-----------
Confidence 445555 5999987 4899999999999999999999988777889999999999999999865
Q ss_pred CCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCC-
Q 008260 241 ALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR- 319 (572)
Q Consensus 241 ~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~- 319 (572)
|.+|.+|+++.++++||++||.... ..++++++||+.+++|+.++ ++|.+|..|++++++++||++||.+...
T Consensus 96 --p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 96 --RDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGLLYAVGGYDVASR 169 (302)
T ss_dssp --SSCCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETTTT
T ss_pred --CccccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecC---CCCCcccCceEEEECCEEEEEeCCCCCCC
Confidence 5899999999999999999998765 67899999999999999997 6899999999999999999999997654
Q ss_pred CCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCc
Q 008260 320 SLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPR 399 (572)
Q Consensus 320 ~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R 399 (572)
..++++++||+.+++|+.+.++ |.+|..|++++++ ++|||+||.+.....+++++||+++++|+.+. .+|.+|
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r 242 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEM---STRRSGAGVGVLN-NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA---DMNMCR 242 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEET-TEEEEECCBSSSSBCCCEEEEETTTTEEEEEC---CCSSCC
T ss_pred ccccEEEEEeCCCCcEEECCCC---ccccccccEEEEC-CEEEEECCCCCCcccceEEEEeCCCCCEeeCC---CCCCcc
Confidence 3578999999999999999766 8999999999885 57999999888777899999999999999996 488999
Q ss_pred cccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCC-ccCcEEEEeCCCCcccccc
Q 008260 400 AGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSK 456 (572)
Q Consensus 400 ~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~-~~~dv~~yd~~~~~~~~~~ 456 (572)
.+|+++++++ +|||+||.++. .++++++||+.++.|....
T Consensus 243 ~~~~~~~~~~-----------------~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 243 RNAGVCAVNG-----------------LLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp BSCEEEEETT-----------------EEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred ccCeEEEECC-----------------EEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence 9999999977 89999999774 6899999999999998754
No 2
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=329.82 Aligned_cols=262 Identities=17% Similarity=0.285 Sum_probs=227.7
Q ss_pred Cceeeec----ceEEecccCCCCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCC
Q 008260 164 LGSVVVY----DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPS 239 (572)
Q Consensus 164 ~~~~~~~----~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~ 239 (572)
...++.| ++|+.+++ +|.+|.+|++++++++|||+||.. ...++++++||+.+++|+.++++
T Consensus 23 ~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~---------- 88 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRC---PFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGP---------- 88 (306)
T ss_dssp TTSEEEEETTTTEEEECCC---CSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECC----------
T ss_pred CceEEEecCCCCCEecCCC---CCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCC----------
Confidence 3455565 59999974 899999999999999999999977 67789999999999999999765
Q ss_pred CCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 008260 240 PALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR 319 (572)
Q Consensus 240 ~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~ 319 (572)
|.+|.+|+++.++++||++||.+.....++++++||+.+++|+.++ .+|.+|..|++++++++||++||.+...
T Consensus 89 ---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 89 ---PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEANGLIYVCGGSLGNN 162 (306)
T ss_dssp ---SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEESCT
T ss_pred ---CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEECCEEEEECCCCCCC
Confidence 6899999999999999999999855577899999999999999996 6899999999999999999999987654
Q ss_pred C---CCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCC
Q 008260 320 S---LLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIP 396 (572)
Q Consensus 320 ~---~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p 396 (572)
. .++++++||+.+++|+.++++ |.+|..|++++++ ++|||+||.+....++++++||+.+++|+.+. .+|
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p 235 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPM---IEARKNHGLVFVK-DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS---PMP 235 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEET-TEEEEECCEETTEEBCCEEEEETTTTEEEECC---CCS
T ss_pred CcccccceEEEeCCCCCeEEECCCc---cchhhcceEEEEC-CEEEEEeCCCCCCCCceEEEeeCCCCcEEECC---CCC
Confidence 3 289999999999999999866 8999999999985 46999999887778899999999999999995 589
Q ss_pred CCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCC-ccCcEEEEeCCCCcccccccC-CCCCCCCccce
Q 008260 397 TPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSKMI-ETPVPDSVSAV 469 (572)
Q Consensus 397 ~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~-~~~dv~~yd~~~~~~~~~~~~-~~~~~~s~~~~ 469 (572)
.+|.+|+++++++ +|||+||+++. ..+++++||+.++.|...... ..+..++...+
T Consensus 236 ~~r~~~~~~~~~~-----------------~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 293 (306)
T 3ii7_A 236 WKGVTVKCAAVGS-----------------IVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLICV 293 (306)
T ss_dssp CCBSCCEEEEETT-----------------EEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCEEEE
T ss_pred CCccceeEEEECC-----------------EEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccceeEEEEE
Confidence 9999999999977 89999999874 789999999999988876433 33333433333
No 3
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=3.3e-39 Score=328.69 Aligned_cols=248 Identities=19% Similarity=0.277 Sum_probs=221.8
Q ss_pred Cceeeec----ceEEecccCCCCCCCCcceeEEEECCEEEEEccC----CCCcccCcEEEEEcCCCcEEEeeecccccCC
Q 008260 164 LGSVVVY----DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGN----HNGRYLSDMHILDLRSWAWSKIQAKAVAEST 235 (572)
Q Consensus 164 ~~~~~~~----~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~----~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~ 235 (572)
+..+..| ++|+.++ .+|.+|.+|++++++++|||+||. .....++++++||+.+++|+.++++
T Consensus 38 ~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~------ 108 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM------ 108 (308)
T ss_dssp CCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC------
T ss_pred cceEEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCC------
Confidence 3455555 5999996 489999999999999999999997 5556789999999999999999765
Q ss_pred CCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecC
Q 008260 236 ESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGE 315 (572)
Q Consensus 236 ~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~ 315 (572)
|.+|..|+++.++++||++||.... ..++++++||+.+++|+.++ ++|.+|.+|++++++++||++||.
T Consensus 109 -------p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~ 177 (308)
T 1zgk_A 109 -------SVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVGGF 177 (308)
T ss_dssp -------SSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCB
T ss_pred -------CcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECC---CCCccccceEEEEECCEEEEEeCC
Confidence 5899999999999999999998765 56789999999999999997 689999999999999999999999
Q ss_pred CCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCC
Q 008260 316 DAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEI 395 (572)
Q Consensus 316 ~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~ 395 (572)
+.... ++++++||+.+++|+.++++ |.+|..|++++++ ++|||+||.+....++++++||+.+++|+.+. .+
T Consensus 178 ~~~~~-~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~ 249 (308)
T 1zgk_A 178 DGTNR-LNSAECYYPERNEWRMITAM---NTIRSGAGVCVLH-NCIYAAGGYDGQDQLNSVERYDVETETWTFVA---PM 249 (308)
T ss_dssp CSSCB-CCCEEEEETTTTEEEECCCC---SSCCBSCEEEEET-TEEEEECCBCSSSBCCCEEEEETTTTEEEECC---CC
T ss_pred CCCCc-CceEEEEeCCCCeEeeCCCC---CCccccceEEEEC-CEEEEEeCCCCCCccceEEEEeCCCCcEEECC---CC
Confidence 87654 89999999999999999765 8999999999985 57999999988778899999999999999986 48
Q ss_pred CCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCC-ccCcEEEEeCCCCcccccc
Q 008260 396 PTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSK 456 (572)
Q Consensus 396 p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~-~~~dv~~yd~~~~~~~~~~ 456 (572)
|.+|.+|+++++++ +||||||+++. ..+++++||++++.|....
T Consensus 250 p~~r~~~~~~~~~~-----------------~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 294 (308)
T 1zgk_A 250 KHRRSALGITVHQG-----------------RIYVLGGYDGHTFLDSVECYDPDTDTWSEVT 294 (308)
T ss_dssp SSCCBSCEEEEETT-----------------EEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred CCCccceEEEEECC-----------------EEEEEcCcCCCcccceEEEEcCCCCEEeecC
Confidence 99999999999977 89999999874 6899999999999998764
No 4
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=2.3e-39 Score=330.76 Aligned_cols=252 Identities=16% Similarity=0.264 Sum_probs=217.9
Q ss_pred cCCceeeec----ceEEecccCCCCCCCCcceeEEEECCEEEEEccCC------CCcccCcEEEEEcCCCcEEEeeeccc
Q 008260 162 EGLGSVVVY----DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH------NGRYLSDMHILDLRSWAWSKIQAKAV 231 (572)
Q Consensus 162 ~~~~~~~~~----~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~------~~~~~~~v~~yd~~t~~W~~~~~~~~ 231 (572)
.+...+..| ++|...+. +.|.+|.+|++++++++|||+||.. .....+++++||+.+++|+.++++
T Consensus 10 ~GG~~~~~yd~~~~~W~~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-- 85 (315)
T 4asc_A 10 ISEEGAVAYDPAANECYCASL--SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL-- 85 (315)
T ss_dssp EETTEEEEEETTTTEEEEEEC--CCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB--
T ss_pred EcCCceEEECCCCCeEecCCC--CCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC--
Confidence 333566666 58987331 3467999999999999999999952 223456799999999999998765
Q ss_pred ccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCC--CCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEE
Q 008260 232 AESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK--DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSL 309 (572)
Q Consensus 232 ~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~--~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~i 309 (572)
|.+|.+|+++.++++||++||... ....++++++||+.+++|+.++ ++|.+|.+|++++++++|
T Consensus 86 -----------p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~i 151 (315)
T 4asc_A 86 -----------PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVLSHMDLV 151 (315)
T ss_dssp -----------SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEE
T ss_pred -----------CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCCcccceeEEEECCEE
Confidence 689999999999999999999763 3467899999999999999997 689999999999999999
Q ss_pred EEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 310 VIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 310 yv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
||+||.......++++++||+.+++|+.++++ |.+|..|+++++++ +|||+||.+....++++++||+.+++|+.+
T Consensus 152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 227 (315)
T 4asc_A 152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATVHDG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPF 227 (315)
T ss_dssp EEECCBCTTSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETT-EEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred EEEeCCCCCCcccceEEEEeCCCCeEEECCCC---CCchhceEEEEECC-EEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence 99999965556789999999999999999866 89999999999855 699999988877889999999999999999
Q ss_pred ccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCC----------CccCcEEEEeCCCCccccc
Q 008260 390 TQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNG----------RYNNEVHVLKPSHKSTLSS 455 (572)
Q Consensus 390 ~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~----------~~~~dv~~yd~~~~~~~~~ 455 (572)
. .+|.+|.+|+++++++ +|||+||.++ ..++++++||++++.|...
T Consensus 228 ~---~~p~~r~~~~~~~~~~-----------------~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 228 E---AFPQERSSLSLVSLVG-----------------TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp C---CCSSCCBSCEEEEETT-----------------EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred C---CCCCcccceeEEEECC-----------------EEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 6 4899999999999977 8999999853 3578999999999999876
No 5
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=321.19 Aligned_cols=247 Identities=19% Similarity=0.337 Sum_probs=221.2
Q ss_pred ceeeec----ceEEecccCCCCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCc---EEEeeecccccCCCC
Q 008260 165 GSVVVY----DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA---WSKIQAKAVAESTES 237 (572)
Q Consensus 165 ~~~~~~----~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~---W~~~~~~~~~~~~~~ 237 (572)
..+..| ++|..++. +|.+|.+|++++++++|||+||..+...++++++||+.+++ |+.++++
T Consensus 31 ~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~-------- 99 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPS---ITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPM-------- 99 (301)
T ss_dssp CCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCC--------
T ss_pred eEEEEEcCCCCeEEeCCC---CChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCC--------
Confidence 345555 59999884 88899999999999999999998877788999999999999 9999765
Q ss_pred CCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCC
Q 008260 238 PSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDA 317 (572)
Q Consensus 238 ~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~ 317 (572)
|.+|..|+++.++++||++||.... ..++++++||+.+++|+.++ ++|.+|..|++++++++||++||.+.
T Consensus 100 -----p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~ 170 (301)
T 2vpj_A 100 -----NVRRGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLG---DMQTAREGAGLVVASGVIYCLGGYDG 170 (301)
T ss_dssp -----SSCCBSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEE---ECSSCCBSCEEEEETTEEEEECCBCS
T ss_pred -----CCCccceeEEEECCEEEEEcccCCC-cccceEEEEcCCCCeEEECC---CCCCCcccceEEEECCEEEEECCCCC
Confidence 6899999999999999999999865 56889999999999999997 57899999999999999999999876
Q ss_pred CCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCC
Q 008260 318 KRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPT 397 (572)
Q Consensus 318 ~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~ 397 (572)
.. .++++++||+.+++|+.+.++ |.+|..|++++++ ++|||+||.+....++++++||+.+++|+.+. .+|.
T Consensus 171 ~~-~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~ 242 (301)
T 2vpj_A 171 LN-ILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVALLN-DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT---SMTT 242 (301)
T ss_dssp SC-BCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEET-TEEEEECCBCSSSBCCCEEEEETTTTEEEEEC---CCSS
T ss_pred Cc-ccceEEEEeCCCCcEEeCCCC---CcccccceEEEEC-CEEEEEeCCCCCcccceEEEEeCCCCcEEECC---CCCC
Confidence 65 589999999999999999765 8999999999985 47999999888777899999999999999995 4899
Q ss_pred CccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCC-ccCcEEEEeCCCCcccccc
Q 008260 398 PRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSK 456 (572)
Q Consensus 398 ~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~-~~~dv~~yd~~~~~~~~~~ 456 (572)
+|.+|+++++++ +||++||+++. .++++++||++++.|....
T Consensus 243 ~r~~~~~~~~~~-----------------~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 285 (301)
T 2vpj_A 243 PRCYVGATVLRG-----------------RLYAIAGYDGNSLLSSIECYDPIIDSWEVVT 285 (301)
T ss_dssp CCBSCEEEEETT-----------------EEEEECCBCSSSBEEEEEEEETTTTEEEEEE
T ss_pred cccceeEEEECC-----------------EEEEEcCcCCCcccccEEEEcCCCCeEEEcC
Confidence 999999999977 89999999774 5689999999999998764
No 6
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.1e-38 Score=326.22 Aligned_cols=256 Identities=20% Similarity=0.318 Sum_probs=219.5
Q ss_pred cceecCCceeeec----ceEEecccCCCCCCCCcceeEEEECCEEEEEccCCC---C---cccCcEEEEEcCCCcEEEee
Q 008260 158 DVVSEGLGSVVVY----DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHN---G---RYLSDMHILDLRSWAWSKIQ 227 (572)
Q Consensus 158 ~~~~~~~~~~~~~----~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~---~---~~~~~v~~yd~~t~~W~~~~ 227 (572)
.++..+...+..| ++|...+. ..|.+|.+|++++++++|||+||... + ...+++++||+.+++|+.++
T Consensus 17 ~i~~~GG~~~~~yd~~~~~W~~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 17 LILLVNDTAAVAYDPMENECYLTAL--AEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEEECSSEEEEEETTTTEEEEEEE--CTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhhccccceEEECCCCCceecccC--CccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 3444454556666 59998542 35678999999999999999999531 1 23456999999999999987
Q ss_pred ecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCC-CCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEEC
Q 008260 228 AKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK-DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVG 306 (572)
Q Consensus 228 ~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~ 306 (572)
++ |.+|.+|+++.++++||++||... ....++++++||+.+++|+.++ ++|.+|.+|++++++
T Consensus 95 ~~-------------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~ 158 (318)
T 2woz_A 95 PL-------------PSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIKVYGHNVISHN 158 (318)
T ss_dssp CB-------------SSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC---CCSSCEESCEEEEET
T ss_pred CC-------------CccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC---CCCCcccccEEEEEC
Confidence 65 689999999999999999999874 3467899999999999999997 689999999999999
Q ss_pred CEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcE
Q 008260 307 TSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (572)
Q Consensus 307 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W 386 (572)
++|||+||.......++++++||+.+++|+.++++ |.+|..|+++++++ +|||+||.+....++++++||+.+++|
T Consensus 159 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 159 GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM---KTPRSMFGVAIHKG-KIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp TEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETT-EEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred CEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC---CCCcccceEEEECC-EEEEEcCcCCCCccceEEEEECCCCeE
Confidence 99999999866656789999999999999999866 89999999999854 799999988777789999999999999
Q ss_pred EeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCC----------CccCcEEEEeCCCCccccc
Q 008260 387 SRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNG----------RYNNEVHVLKPSHKSTLSS 455 (572)
Q Consensus 387 ~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~----------~~~~dv~~yd~~~~~~~~~ 455 (572)
+.+. .+|.+|.+|+++++++ +||++||.+. ...+++|+||+.+++|...
T Consensus 235 ~~~~---~~p~~r~~~~~~~~~~-----------------~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 235 EVMT---EFPQERSSISLVSLAG-----------------SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EECC---CCSSCCBSCEEEEETT-----------------EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EECC---CCCCcccceEEEEECC-----------------EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 9985 4899999999999977 8999999864 3578999999999999876
No 7
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=6.3e-37 Score=311.82 Aligned_cols=234 Identities=19% Similarity=0.246 Sum_probs=200.4
Q ss_pred CCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEE
Q 008260 181 QRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLS 260 (572)
Q Consensus 181 ~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv 260 (572)
..|.+|..|+++.++++||++||. .+..++++++||+.+++|+.++.+ |.+|.+|+++.++++||+
T Consensus 10 ~~~~~~~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~~-------------p~~r~~~~~~~~~~~lyv 75 (308)
T 1zgk_A 10 SSGLVPRGSHAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADL-------------QVPRSGLAGCVVGGLLYA 75 (308)
T ss_dssp -----------CCCCCCEEEECCB-SSSBCCCEEEEETTTTEEEECCCC-------------SSCCBSCEEEEETTEEEE
T ss_pred cCCeeeCCccccCCCCEEEEEeCc-CCCCcceEEEEcCCCCeEeECCCC-------------CcccccceEEEECCEEEE
Confidence 467889999999999999999998 567789999999999999999754 689999999999999999
Q ss_pred EeccC---CCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEE
Q 008260 261 IAGHT---KDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDE 337 (572)
Q Consensus 261 ~GG~~---~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 337 (572)
+||.. .....++++++||+.+++|+.++ ++|.+|..|++++++++|||+||.+... .++++++||+.+++|+.
T Consensus 76 ~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~ 151 (308)
T 1zgk_A 76 VGGRNNSPDGNTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHL 151 (308)
T ss_dssp ECCEEEETTEEEECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEE
T ss_pred ECCCcCCCCCCeecceEEEECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEeE
Confidence 99984 23356789999999999999997 6899999999999999999999987654 58899999999999999
Q ss_pred eeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceee
Q 008260 338 IDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSL 417 (572)
Q Consensus 338 v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~ 417 (572)
++++ |.+|..|++++++ ++|||+||.+....++++++||+.+++|+.++ .+|.+|.+|+++++++
T Consensus 152 ~~~~---p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~-------- 216 (308)
T 1zgk_A 152 VAPM---LTRRIGVGVAVLN-RLLYAVGGFDGTNRLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHN-------- 216 (308)
T ss_dssp CCCC---SSCCBSCEEEEET-TEEEEECCBCSSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETT--------
T ss_pred CCCC---CccccceEEEEEC-CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC---CCCCccccceEEEECC--------
Confidence 9866 8999999999984 57999999887777899999999999999985 4899999999999977
Q ss_pred eeeccCCCCEEEEEcCCCCC-ccCcEEEEeCCCCcccccc
Q 008260 418 VVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSK 456 (572)
Q Consensus 418 ~~~~~~g~~~l~v~GG~~~~-~~~dv~~yd~~~~~~~~~~ 456 (572)
+|||+||.++. ..+++++||+.++.|....
T Consensus 217 ---------~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 217 ---------CIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp ---------EEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred ---------EEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 89999999764 6899999999999998765
No 8
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=3.2e-36 Score=312.78 Aligned_cols=247 Identities=18% Similarity=0.312 Sum_probs=201.5
Q ss_pred ceEEecccCCCCC-CCCcceeEEEECCEEEEEccC-C----CCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCC
Q 008260 171 DQWIAPPISGQRP-KARYEHGAAVVQDKMYIYGGN-H----NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLT 244 (572)
Q Consensus 171 ~~W~~~~~~g~~p-~~R~~~s~~~~~~~lyv~GG~-~----~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~ 244 (572)
++|+.+++ +| .+|.+|++++++++|||+||. . ....++++++||+.+++|+.++++. |.
T Consensus 43 ~~W~~~~~---~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~------------p~ 107 (357)
T 2uvk_A 43 KKWTALAA---FPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA------------PM 107 (357)
T ss_dssp CCEEECCC---CTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC------------SS
T ss_pred CCeeECCC---CCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC------------Cc
Confidence 58999985 78 899999999999999999997 2 2356899999999999999998763 68
Q ss_pred CCcceeEEEeCCEEEEEeccCCCC---------------------------------CcceeEEEEECCCCceEEeccCC
Q 008260 245 PCAGHSLIPWENKLLSIAGHTKDP---------------------------------SEIIQVKVFDLQTCSWSTLKTYG 291 (572)
Q Consensus 245 ~R~~hs~~~~~~~iyv~GG~~~~~---------------------------------~~~~~v~~yd~~~~~W~~~~~~g 291 (572)
+|.+|+++..+++|||+||..... ..++++++||+.+++|+.+.
T Consensus 108 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--- 184 (357)
T 2uvk_A 108 GMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG--- 184 (357)
T ss_dssp CCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---
T ss_pred ccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECC---
Confidence 999999999999999999986431 24589999999999999997
Q ss_pred CCCCCCc-ceEEEEECCEEEEEecCCCCCCCCCceEEEEC--CCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCC
Q 008260 292 KPPVSRG-GQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL--ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS 368 (572)
Q Consensus 292 ~~p~~R~-~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~--~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~ 368 (572)
++|.+|. +|++++++++||||||.+......+++++||+ .+++|+.+..+ +.|.+|..|+++++++ +|||+||.+
T Consensus 185 ~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~-~iyv~GG~~ 262 (357)
T 2uvk_A 185 ESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISND-SLIFAGGAG 262 (357)
T ss_dssp ECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEETT-EEEEECCEE
T ss_pred CCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEECC-EEEEEcCcc
Confidence 5676654 49999999999999998765556789999987 89999999876 3345567888888855 699999954
Q ss_pred C-----------------CcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEE
Q 008260 369 H-----------------AACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAF 431 (572)
Q Consensus 369 ~-----------------~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~ 431 (572)
. ...++++++||+.+++|+.+. .+|.+|.+|+++++++ +||||
T Consensus 263 ~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~-----------------~i~v~ 322 (357)
T 2uvk_A 263 FKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG---ELSQGRAYGVSLPWNN-----------------SLLII 322 (357)
T ss_dssp CTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE---ECSSCCBSSEEEEETT-----------------EEEEE
T ss_pred ccCCcccccccceeccccccceeeEEEEecCCCceeeCC---CCCCCcccceeEEeCC-----------------EEEEE
Confidence 2 223468999999999999985 4899999999999877 89999
Q ss_pred cCCCC--CccCcEEEEeCCCCccccccc
Q 008260 432 GGYNG--RYNNEVHVLKPSHKSTLSSKM 457 (572)
Q Consensus 432 GG~~~--~~~~dv~~yd~~~~~~~~~~~ 457 (572)
||+++ ..++++++|+.++++|.+...
T Consensus 323 GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 323 GGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 99875 357999999999999987643
No 9
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=7.9e-35 Score=295.67 Aligned_cols=217 Identities=18% Similarity=0.301 Sum_probs=194.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeE
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v 274 (572)
.+.||++||... ++++++||+.+++|..++++ |.+|.+|+++.++++||++||.. ...++++
T Consensus 11 ~~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~~-------------p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~ 72 (306)
T 3ii7_A 11 HDYRIALFGGSQ---PQSCRYFNPKDYSWTDIRCP-------------FEKRRDAACVFWDNVVYILGGSQ--LFPIKRM 72 (306)
T ss_dssp CCEEEEEECCSS---TTSEEEEETTTTEEEECCCC-------------SCCCBSCEEEEETTEEEEECCBS--SSBCCEE
T ss_pred cceEEEEeCCCC---CceEEEecCCCCCEecCCCC-------------CcccceeEEEEECCEEEEEeCCC--CCCcceE
Confidence 489999999655 78999999999999998765 68999999999999999999998 4678999
Q ss_pred EEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEE
Q 008260 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAA 354 (572)
Q Consensus 275 ~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~ 354 (572)
++||+.+++|+.++ ++|.+|.+|++++++++|||+||.+.....++++++||+.+++|+.++++ |.+|..|+++
T Consensus 73 ~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~ 146 (306)
T 3ii7_A 73 DCYNVVKDSWYSKL---GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM---LTQRCSHGMV 146 (306)
T ss_dssp EEEETTTTEEEEEE---CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC---SSCCBSCEEE
T ss_pred EEEeCCCCeEEECC---CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC---cCCcceeEEE
Confidence 99999999999997 68999999999999999999999975555789999999999999999766 8999999999
Q ss_pred EEcCCEEEEEeCCCCCcC----cCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEE
Q 008260 355 VHAERYLLIFGGGSHAAC----FNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVA 430 (572)
Q Consensus 355 ~~~~~~lyv~GG~~~~~~----~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v 430 (572)
+++ ++|||+||...... ++++++||+.+++|+.++ .+|.+|.+|+++++++ +||+
T Consensus 147 ~~~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~-----------------~i~v 205 (306)
T 3ii7_A 147 EAN-GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC---PMIEARKNHGLVFVKD-----------------KIFA 205 (306)
T ss_dssp EET-TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETT-----------------EEEE
T ss_pred EEC-CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC---CccchhhcceEEEECC-----------------EEEE
Confidence 985 47999999766554 899999999999999996 4899999999999977 8999
Q ss_pred EcCCCCC-ccCcEEEEeCCCCcccccc
Q 008260 431 FGGYNGR-YNNEVHVLKPSHKSTLSSK 456 (572)
Q Consensus 431 ~GG~~~~-~~~dv~~yd~~~~~~~~~~ 456 (572)
+||.++. ..+++++||+.++.|....
T Consensus 206 ~GG~~~~~~~~~~~~yd~~~~~W~~~~ 232 (306)
T 3ii7_A 206 VGGQNGLGGLDNVEYYDIKLNEWKMVS 232 (306)
T ss_dssp ECCEETTEEBCCEEEEETTTTEEEECC
T ss_pred EeCCCCCCCCceEEEeeCCCCcEEECC
Confidence 9998764 6789999999999998764
No 10
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=293.09 Aligned_cols=223 Identities=18% Similarity=0.299 Sum_probs=200.1
Q ss_pred EECCEEEEEcc-CCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcc
Q 008260 193 VVQDKMYIYGG-NHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEI 271 (572)
Q Consensus 193 ~~~~~lyv~GG-~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~ 271 (572)
.++++||++|| ...+..++++++||+.+++|..++.+ |.+|.+|+++.++++||++||.... ...
T Consensus 12 ~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~-------------p~~r~~~~~~~~~~~l~v~GG~~~~-~~~ 77 (301)
T 2vpj_A 12 GANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSI-------------TRKRRYVASVSLHDRIYVIGGYDGR-SRL 77 (301)
T ss_dssp -CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCC-------------SSCCBSCEEEEETTEEEEECCBCSS-CBC
T ss_pred cCCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCC-------------ChhhccccEEEECCEEEEEcCCCCC-ccC
Confidence 36899999999 66678889999999999999998765 5799999999999999999998754 678
Q ss_pred eeEEEEECCCCc---eEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcc
Q 008260 272 IQVKVFDLQTCS---WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPR 348 (572)
Q Consensus 272 ~~v~~yd~~~~~---W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R 348 (572)
+++++||+.+++ |+.++ ++|.+|..|++++++++||++||.+... .++++++||+.+++|+.++++ |.+|
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~---p~~r 150 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVA---PMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGDM---QTAR 150 (301)
T ss_dssp CCEEEEETTCCTTCCCEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEEC---SSCC
T ss_pred ceEEEEECCCCCCCeeEECC---CCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCCC---CCCc
Confidence 899999999999 99996 6899999999999999999999998654 489999999999999999876 8999
Q ss_pred cceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEE
Q 008260 349 SDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVI 428 (572)
Q Consensus 349 ~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l 428 (572)
..|++++++ ++|||+||.+....++++++||+.+++|+.+. .+|.+|.+|+++++++ +|
T Consensus 151 ~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~-----------------~i 209 (301)
T 2vpj_A 151 EGAGLVVAS-GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALLND-----------------HI 209 (301)
T ss_dssp BSCEEEEET-TEEEEECCBCSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETT-----------------EE
T ss_pred ccceEEEEC-CEEEEECCCCCCcccceEEEEeCCCCcEEeCC---CCCcccccceEEEECC-----------------EE
Confidence 999999985 56999999888778899999999999999995 4899999999999977 89
Q ss_pred EEEcCCCCC-ccCcEEEEeCCCCccccccc
Q 008260 429 VAFGGYNGR-YNNEVHVLKPSHKSTLSSKM 457 (572)
Q Consensus 429 ~v~GG~~~~-~~~dv~~yd~~~~~~~~~~~ 457 (572)
|++||.++. ..+++++||+.++.|.....
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 239 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDSWTTVTS 239 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEeCCCCCcccceEEEEeCCCCcEEECCC
Confidence 999999875 58999999999999987653
No 11
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=9.6e-35 Score=294.49 Aligned_cols=225 Identities=17% Similarity=0.321 Sum_probs=195.6
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCC
Q 008260 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPS 269 (572)
Q Consensus 190 s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~ 269 (572)
..+.+++.||++||... ..++++++||+.+++|..++.+ |.+|.+|+++.++++||++||.... .
T Consensus 10 ~~~~~~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~~-------------p~~r~~~~~~~~~~~lyv~GG~~~~-~ 74 (302)
T 2xn4_A 10 TPMNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAEL-------------PSRRCRAGMVYMAGLVFAVGGFNGS-L 74 (302)
T ss_dssp -----CEEEEEECCBSS-SBCCCEEEEETTTTEEEEECCC-------------SSCCBSCEEEEETTEEEEESCBCSS-S
T ss_pred cccCCCCEEEEECCCCC-CCCCcEEEEcCcCCcEeEcccC-------------CcccccceEEEECCEEEEEeCcCCC-c
Confidence 34456899999999654 4678999999999999998765 6899999999999999999998765 5
Q ss_pred cceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 270 EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 270 ~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
..+++++||+.+++|+.++ .+|.+|..|++++++++|||+||.+... .++++++||+.+++|+.++++ |.+|.
T Consensus 75 ~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~---p~~r~ 147 (302)
T 2xn4_A 75 RVRTVDSYDPVKDQWTSVA---NMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVAPM---NTRRS 147 (302)
T ss_dssp BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEECCC---SSCCB
T ss_pred cccceEEECCCCCceeeCC---CCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecCCC---CCccc
Confidence 6789999999999999997 6899999999999999999999987654 578999999999999999766 89999
Q ss_pred ceEEEEEcCCEEEEEeCCCCC--cCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCE
Q 008260 350 DHAAAVHAERYLLIFGGGSHA--ACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDV 427 (572)
Q Consensus 350 ~~~~~~~~~~~lyv~GG~~~~--~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~ 427 (572)
.|++++++ ++|||+||.+.. ..++++++||+.+++|+.+. .+|.+|.+|+++++++ +
T Consensus 148 ~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~-----------------~ 206 (302)
T 2xn4_A 148 SVGVGVVG-GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLNN-----------------L 206 (302)
T ss_dssp SCEEEEET-TEEEEECCEETTTTEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETT-----------------E
T ss_pred CceEEEEC-CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC---CCccccccccEEEECC-----------------E
Confidence 99999985 469999997654 35789999999999999995 4899999999999977 8
Q ss_pred EEEEcCCCCC-ccCcEEEEeCCCCccccccc
Q 008260 428 IVAFGGYNGR-YNNEVHVLKPSHKSTLSSKM 457 (572)
Q Consensus 428 l~v~GG~~~~-~~~dv~~yd~~~~~~~~~~~ 457 (572)
||++||.++. ..+++++||+.++.|.....
T Consensus 207 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 237 (302)
T 2xn4_A 207 LYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD 237 (302)
T ss_dssp EEEECCBSSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEECCCCCCcccceEEEEeCCCCCEeeCCC
Confidence 9999999774 57899999999999987653
No 12
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=4.1e-34 Score=296.82 Aligned_cols=236 Identities=16% Similarity=0.187 Sum_probs=189.8
Q ss_pred CCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcC--CCcEEEeeecccccCCCCCCCCCC-CCCcceeEEEeCCE
Q 008260 181 QRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLR--SWAWSKIQAKAVAESTESPSPALL-TPCAGHSLIPWENK 257 (572)
Q Consensus 181 ~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~~~~~~~~~~p-~~R~~hs~~~~~~~ 257 (572)
++|.+|.+|++++++++|||+||... +++++||+. +++|+.++++ | .+|.+|+++.++++
T Consensus 5 ~lP~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~-------------p~~~R~~~~~~~~~~~ 67 (357)
T 2uvk_A 5 ETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAF-------------PGGPRDQATSAFIDGN 67 (357)
T ss_dssp CCSSCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCCC-------------TTCCCBSCEEEEETTE
T ss_pred CCCccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCCC-------------CCCcCccceEEEECCE
Confidence 58999999999999999999999643 489999998 4999998775 5 79999999999999
Q ss_pred EEEEecc-C---CCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCC--------------
Q 008260 258 LLSIAGH-T---KDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR-------------- 319 (572)
Q Consensus 258 iyv~GG~-~---~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~-------------- 319 (572)
|||+||. . .....++++++||+.+++|+.+++.. |.+|.+|++++++++|||+||.+...
T Consensus 68 lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 145 (357)
T 2uvk_A 68 LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA--PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKD 145 (357)
T ss_dssp EEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC--SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTC
T ss_pred EEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC--CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCc
Confidence 9999998 3 12356789999999999999998542 59999999999999999999986432
Q ss_pred -------------------CCCCceEEEECCCCcEEEeeCCCCCCCcccc-eEEEEEcCCEEEEEeCCCCC-cCcCcEEE
Q 008260 320 -------------------SLLNDLHILDLETMTWDEIDAVGVPPSPRSD-HAAAVHAERYLLIFGGGSHA-ACFNDLHV 378 (572)
Q Consensus 320 -------------------~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~-~~~~~~~~~~lyv~GG~~~~-~~~~~v~~ 378 (572)
.+++++++||+.+++|+.+.++ |.+|.. |++++++ ++|||+||.+.. ...+++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~ 221 (357)
T 2uvk_A 146 STAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES---PWYGTAGAAVVNKG-DKTWLINGEAKPGLRTDAVFE 221 (357)
T ss_dssp HHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC---SSCCCBSCEEEEET-TEEEEECCEEETTEECCCEEE
T ss_pred ccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCC---CCCCcccccEEEEC-CEEEEEeeecCCCcccCceEE
Confidence 2468999999999999999876 666555 8888875 569999996543 45678999
Q ss_pred EEC--CCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCC------------------Cc
Q 008260 379 LDL--QTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNG------------------RY 438 (572)
Q Consensus 379 yd~--~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~------------------~~ 438 (572)
||+ .+++|+.+... ..|.+|.+|+++++++ +||||||++. ..
T Consensus 222 ~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~-----------------~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~ 283 (357)
T 2uvk_A 222 LDFTGNNLKWNKLAPV-SSPDGVAGGFAGISND-----------------SLIFAGGAGFKGSRENYQNGKNYAHEGLKK 283 (357)
T ss_dssp EECC---CEEEECCCS-STTTCCBSCEEEEETT-----------------EEEEECCEECTTHHHHHHTTCSSTTTTCCC
T ss_pred EEecCCCCcEEecCCC-CCCcccccceEEEECC-----------------EEEEEcCccccCCcccccccceeccccccc
Confidence 987 99999998643 2344577888999877 8999999642 13
Q ss_pred cCcEEEEeCCCCccccccc
Q 008260 439 NNEVHVLKPSHKSTLSSKM 457 (572)
Q Consensus 439 ~~dv~~yd~~~~~~~~~~~ 457 (572)
++++++||+.++.|.....
T Consensus 284 ~~~~~~yd~~~~~W~~~~~ 302 (357)
T 2uvk_A 284 SYSTDIHLWHNGKWDKSGE 302 (357)
T ss_dssp EECCEEEECC---CEEEEE
T ss_pred eeeEEEEecCCCceeeCCC
Confidence 4689999999999987643
No 13
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=296.30 Aligned_cols=210 Identities=18% Similarity=0.330 Sum_probs=188.3
Q ss_pred ceEEecccCCCCCCCCcceeEEEECCEEEEEccCC---CCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCc
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH---NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCA 247 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~---~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~ 247 (572)
++|+.+++ +|.+|.+|++++++++|||+||.. +...++++++||+.+++|+.++++ |.+|.
T Consensus 77 ~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-------------p~~r~ 140 (315)
T 4asc_A 77 SEWLGMPP---LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL-------------PYVVY 140 (315)
T ss_dssp TEEEECCC---BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC-------------SSCCB
T ss_pred CeEEECCC---CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC-------------CCccc
Confidence 58999874 899999999999999999999964 367889999999999999998765 68999
Q ss_pred ceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEE
Q 008260 248 GHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHI 327 (572)
Q Consensus 248 ~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 327 (572)
+|+++.++++||++||.......++++++||+.+++|+.++ ++|.+|..|++++++++|||+||.+... .++++++
T Consensus 141 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~ 216 (315)
T 4asc_A 141 GHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLFGATVHDGRIIVAAGVTDTG-LTSSAEV 216 (315)
T ss_dssp SCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEEEEECSSS-EEEEEEE
T ss_pred ceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC---CCCCchhceEEEEECCEEEEEeccCCCC-ccceEEE
Confidence 99999999999999999666678899999999999999997 6899999999999999999999997665 5789999
Q ss_pred EECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCC---------cCcCcEEEEECCCCcEEeeccCCCCCCC
Q 008260 328 LDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHA---------ACFNDLHVLDLQTMEWSRPTQQGEIPTP 398 (572)
Q Consensus 328 yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~---------~~~~~v~~yd~~t~~W~~v~~~g~~p~~ 398 (572)
||+.+++|+.+.++ |.+|..|+++++++ +|||+||.+.. ..++++++||+++++|+.+ ++.+
T Consensus 217 yd~~~~~W~~~~~~---p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~~~ 287 (315)
T 4asc_A 217 YSITDNKWAPFEAF---PQERSSLSLVSLVG-TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV-----LREI 287 (315)
T ss_dssp EETTTTEEEEECCC---SSCCBSCEEEEETT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE-----ESCS
T ss_pred EECCCCeEEECCCC---CCcccceeEEEECC-EEEEECCccccCcCCccccccccCcEEEecCCCChhhhh-----ccCC
Confidence 99999999999765 89999999999855 79999997431 4568999999999999998 5788
Q ss_pred ccccEEEEECC
Q 008260 399 RAGHAGVTIGE 409 (572)
Q Consensus 399 R~~~~~~~~~~ 409 (572)
|.+|+++++++
T Consensus 288 r~~~~~~~~~~ 298 (315)
T 4asc_A 288 AYAAGATFLPV 298 (315)
T ss_dssp SCCSSCEEEEE
T ss_pred cCccceEEeCC
Confidence 99999999987
No 14
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=2.8e-34 Score=293.45 Aligned_cols=210 Identities=22% Similarity=0.382 Sum_probs=188.5
Q ss_pred ceEEecccCCCCCCCCcceeEEEECCEEEEEccCC--CCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcc
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH--NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAG 248 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~--~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~ 248 (572)
++|+.+++ +|.+|.+|++++++++|||+||.. ....++++++||+.+++|+.++++ |.+|.+
T Consensus 88 ~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~-------------p~~r~~ 151 (318)
T 2woz_A 88 SEWVGLPP---LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL-------------PIKVYG 151 (318)
T ss_dssp TEEEECSC---BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC-------------SSCEES
T ss_pred CcEEECCC---CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC-------------CCcccc
Confidence 59999874 899999999999999999999975 456789999999999999999765 688999
Q ss_pred eeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEE
Q 008260 249 HSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHIL 328 (572)
Q Consensus 249 hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 328 (572)
|+++.++++||++||.......++++++||+.+++|+.++ ++|.+|..|++++++++|||+||.+... ..+++++|
T Consensus 152 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~y 227 (318)
T 2woz_A 152 HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTPRSMFGVAIHKGKIVIAGGVTEDG-LSASVEAF 227 (318)
T ss_dssp CEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEEETTE-EEEEEEEE
T ss_pred cEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC---CCCCCcccceEEEECCEEEEEcCcCCCC-ccceEEEE
Confidence 9999999999999998766677899999999999999997 6899999999999999999999987654 57899999
Q ss_pred ECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCC---------CcCcCcEEEEECCCCcEEeeccCCCCCCCc
Q 008260 329 DLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH---------AACFNDLHVLDLQTMEWSRPTQQGEIPTPR 399 (572)
Q Consensus 329 d~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~---------~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R 399 (572)
|+++++|+.+.++ |.+|..|+++++++ +|||+||.+. ....+++|+||+++++|+.+ +|.+|
T Consensus 228 d~~~~~W~~~~~~---p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~~~r 298 (318)
T 2woz_A 228 DLKTNKWEVMTEF---PQERSSISLVSLAG-SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM-----LKEIR 298 (318)
T ss_dssp ETTTCCEEECCCC---SSCCBSCEEEEETT-EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE-----ESCCG
T ss_pred ECCCCeEEECCCC---CCcccceEEEEECC-EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh-----ccccc
Confidence 9999999999765 88999999998855 6999999764 24578999999999999998 57899
Q ss_pred cccEEEEECC
Q 008260 400 AGHAGVTIGE 409 (572)
Q Consensus 400 ~~~~~~~~~~ 409 (572)
++|+++++++
T Consensus 299 ~~~~~~~~~~ 308 (318)
T 2woz_A 299 YASGASCLAT 308 (318)
T ss_dssp GGTTCEEEEE
T ss_pred ccccceeeCC
Confidence 9999999987
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.5e-33 Score=317.74 Aligned_cols=244 Identities=15% Similarity=0.196 Sum_probs=208.4
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEee-ecccccCCCCCCCCCCCCCccee
Q 008260 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQ-AKAVAESTESPSPALLTPCAGHS 250 (572)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~-~~~~~~~~~~~~~~~p~~R~~hs 250 (572)
+|...+ ..|.+|++|+++ ++++|||+||... ..++++++||+.+++|+.++ +++ ...+|.+|.+|+
T Consensus 378 ~~~~~~---~~p~rr~g~~~~-~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p--------~~~~p~~R~~hs 444 (695)
T 2zwa_A 378 QLLECE---CPINRKFGDVDV-AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVS--------SSEVPVARMCHT 444 (695)
T ss_dssp EEEECC---CTTCCBSCEEEE-CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCC--------CSCCCCCCBSCE
T ss_pred eEeccC---CCCCCceeEEEE-ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCC--------CCCCCccccceE
Confidence 555553 366777776554 8999999999876 78899999999999999998 532 234589999999
Q ss_pred EEEe--CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEE
Q 008260 251 LIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHI 327 (572)
Q Consensus 251 ~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 327 (572)
++.+ +++|||+||.......++++|+||+.+++|+.++ ++|.+|.+|+++++ +++||||||.+... ++++
T Consensus 445 ~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~ 517 (695)
T 2zwa_A 445 FTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLL 517 (695)
T ss_dssp EEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEE
T ss_pred EEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----CEEE
Confidence 9999 9999999999876567899999999999999997 68999999999997 99999999997654 8999
Q ss_pred EECCCCcEEEeeCCCCCCCcccceEEEEEc-C-CEEEEEeCCCCC--cCcCcEEEEECCCCc------EEeeccCCCCCC
Q 008260 328 LDLETMTWDEIDAVGVPPSPRSDHAAAVHA-E-RYLLIFGGGSHA--ACFNDLHVLDLQTME------WSRPTQQGEIPT 397 (572)
Q Consensus 328 yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~-~-~~lyv~GG~~~~--~~~~~v~~yd~~t~~------W~~v~~~g~~p~ 397 (572)
||+.+++|+.+.+.+..|.+|..|++++++ + ++|||+||.... ..++++++||+.+++ |+.+... .+.
T Consensus 518 yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~ 595 (695)
T 2zwa_A 518 YNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLF 595 (695)
T ss_dssp EETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGG
T ss_pred EECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCC
Confidence 999999999999866679999999988765 2 679999997543 678999999999999 8988641 258
Q ss_pred CccccEEEEEC-CccccceeeeeeccCCCCEEEEEcCCCCC----ccCcEEEEeCCCCcccc
Q 008260 398 PRAGHAGVTIG-ENWFLGLSLVVSSYSGEDVIVAFGGYNGR----YNNEVHVLKPSHKSTLS 454 (572)
Q Consensus 398 ~R~~~~~~~~~-~~~~iG~s~~~~~~~g~~~l~v~GG~~~~----~~~dv~~yd~~~~~~~~ 454 (572)
+|.+|++++++ + +|||+||+++. ..+++++||+.++.|..
T Consensus 596 ~R~~~~~~~~~~~-----------------~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~ 640 (695)
T 2zwa_A 596 QRYGSQIKYITPR-----------------KLLIVGGTSPSGLFDRTNSIISLDPLSETLTS 640 (695)
T ss_dssp CCBSCEEEEEETT-----------------EEEEECCBCSSCCCCTTTSEEEEETTTTEEEE
T ss_pred CcccceEEEeCCC-----------------EEEEECCccCCCCCCCCCeEEEEECCCCeEEE
Confidence 99999999998 5 89999998653 58999999999999973
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=9.3e-33 Score=311.16 Aligned_cols=250 Identities=19% Similarity=0.196 Sum_probs=206.8
Q ss_pred ceeeec----ceEEecc-c--CCCCCCCCcceeEEEE--CCEEEEEccCCCC-cccCcEEEEEcCCCcEEEeeecccccC
Q 008260 165 GSVVVY----DQWIAPP-I--SGQRPKARYEHGAAVV--QDKMYIYGGNHNG-RYLSDMHILDLRSWAWSKIQAKAVAES 234 (572)
Q Consensus 165 ~~~~~~----~~W~~~~-~--~g~~p~~R~~~s~~~~--~~~lyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~ 234 (572)
..+++| ++|+.++ + .+.+|.+|.+|+++++ +++|||+||.... ..++++|+||+.+++|+.++++
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~----- 486 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL----- 486 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCC-----
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCC-----
Confidence 456666 5899887 3 3568999999999999 9999999997764 3789999999999999999765
Q ss_pred CCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEEC---CEEE
Q 008260 235 TESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVG---TSLV 310 (572)
Q Consensus 235 ~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~---~~iy 310 (572)
|.+|.+|+++.+ +++|||+||.+... ++++||+.+++|+.+++.+.+|.+|.+|++++++ ++||
T Consensus 487 --------p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 487 --------SHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp --------SBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred --------CCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 689999999997 99999999997653 8999999999999999777799999999988876 8999
Q ss_pred EEecCCCCC-CCCCceEEEECCCCc------EEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCc---CcCcEEEEE
Q 008260 311 IFGGEDAKR-SLLNDLHILDLETMT------WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAA---CFNDLHVLD 380 (572)
Q Consensus 311 v~GG~~~~~-~~~~~v~~yd~~t~~------W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~---~~~~v~~yd 380 (572)
|+||..... ..++++++||+.+++ |+.+..+ ++.+|.+|+++++++++|||+||.+... ..+++++||
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 999986543 568999999999999 8998764 3588999999999746799999976543 578999999
Q ss_pred CCCCcEEeeccCCC----CCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCC-----CCccCcEEEEeCCC
Q 008260 381 LQTMEWSRPTQQGE----IPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN-----GRYNNEVHVLKPSH 449 (572)
Q Consensus 381 ~~t~~W~~v~~~g~----~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~-----~~~~~dv~~yd~~~ 449 (572)
+.+++|+.+..... .+..+.+|+++.+++. +|||+||.. |.+.|++|.+|+..
T Consensus 633 ~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g----------------~i~v~GGg~~cfsfGt~~n~i~~ldl~~ 694 (695)
T 2zwa_A 633 PLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMG----------------TIHIIGGGATCYGFGSVTNVGLKLIAIA 694 (695)
T ss_dssp TTTTEEEECCCCHHHHHHSCCCCSSCEEECC-------------------CEEEECCEEECTTSCEEECCCEEEEECC
T ss_pred CCCCeEEEeeccccccCCCCccceeeeEEEeCCC----------------EEEEEeCCccCcCccccccceEEEEEEc
Confidence 99999997642211 1135778998887652 799999952 45678999998754
No 17
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=99.97 E-value=3.1e-31 Score=214.83 Aligned_cols=88 Identities=27% Similarity=0.554 Sum_probs=81.4
Q ss_pred hHHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCCHHHHH
Q 008260 12 YPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAM 91 (572)
Q Consensus 12 ~~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~~~~a~ 91 (572)
|+++|++|+++|+... + ..++++|++|+|||||||||+|||++++|++||+++++||+||++++|||++|||
T Consensus 2 l~~~F~~A~~~v~~l~------~--~~~~~~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~ 73 (89)
T 1hbk_A 2 MAQVFEECVSFINGLP------R--TINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQ 73 (89)
T ss_dssp HHHHHHHHHHHHHHSC------T--TCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHH
T ss_pred hHHHHHHHHHHHHhcC------C--cCCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHhHHHHHHHHHhcCCCHHHHH
Confidence 6899999999997311 1 3689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCccc
Q 008260 92 RLFVKILEEEDPGWYS 107 (572)
Q Consensus 92 ~~yi~~~~~~~p~~~~ 107 (572)
++||++|++++|.|.+
T Consensus 74 ~~YI~~v~~l~~~~~~ 89 (89)
T 1hbk_A 74 KRYVDIVSEIFPYWQD 89 (89)
T ss_dssp HHHHHHHHHHCTTTTC
T ss_pred HHHHHHHHHHcccccC
Confidence 9999999999999963
No 18
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=8.3e-31 Score=219.26 Aligned_cols=95 Identities=34% Similarity=0.648 Sum_probs=88.0
Q ss_pred cCCCChHHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCC
Q 008260 7 SSGLAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMA 86 (572)
Q Consensus 7 ~~~~~~~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~ 86 (572)
+....|+++|++|+++|+ .+...+++|++|+|||||||||+|||++++|++||+++++||+||++++|||
T Consensus 3 ~~~~~l~~~F~~A~~~vk----------~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms 72 (109)
T 2cop_A 3 SGSSGLAELFEKAAAHLQ----------GLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSS 72 (109)
T ss_dssp CCCCCSHHHHHHHHHHHT----------TSTTTSCHHHHHHHHHHHHHHHTCSCCSCCCCSSCHHHHHHHHHHHSCTTCC
T ss_pred CcchHHHHHHHHHHHHHH----------HcccCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHHHHHHHHHHHhcCCC
Confidence 445668999999999996 4556899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCccccccC
Q 008260 87 TTEAMRLFVKILEEEDPGWYSRASN 111 (572)
Q Consensus 87 ~~~a~~~yi~~~~~~~p~~~~~~~~ 111 (572)
++|||++||++|++++|.|......
T Consensus 73 ~eeAm~~YI~lv~~l~~~~~~~~~~ 97 (109)
T 2cop_A 73 PSQAMQEYIAVVKKLDPGWNPQIPE 97 (109)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHHhhhhcccchh
Confidence 9999999999999999999987653
No 19
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.9e-31 Score=213.48 Aligned_cols=85 Identities=29% Similarity=0.502 Sum_probs=80.7
Q ss_pred hHHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCCHHHHH
Q 008260 12 YPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAM 91 (572)
Q Consensus 12 ~~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~~~~a~ 91 (572)
|+++|++|+++|+ .+..+|++|++|+|||||||||+|||++++|++||+++++||+||++++|||++|||
T Consensus 1 l~~~F~~A~~~v~----------~l~~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeA~ 70 (86)
T 1st7_A 1 VSQLFEEKAKAVN----------ELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAE 70 (86)
T ss_dssp CHHHHHHHHHHHT----------SCSSCCCHHHHHHHHHHHHHHHHCSCCCCCCCSSCHHHHHHHHHHHTTTTTHHHHHH
T ss_pred CHHHHHHHHHHHH----------HccCCcCHHHHHHHHHHHHHHhhCCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHH
Confidence 5799999999996 455689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcc
Q 008260 92 RLFVKILEEEDPGWY 106 (572)
Q Consensus 92 ~~yi~~~~~~~p~~~ 106 (572)
++||++|++++|.|.
T Consensus 71 ~~YI~~v~~l~~~~~ 85 (86)
T 1st7_A 71 KEYIALVDQLIAKYS 85 (86)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhc
Confidence 999999999999885
No 20
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=99.97 E-value=4e-31 Score=213.07 Aligned_cols=86 Identities=24% Similarity=0.367 Sum_probs=81.3
Q ss_pred ChHHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCCHHHH
Q 008260 11 AYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEA 90 (572)
Q Consensus 11 ~~~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~~~~a 90 (572)
+|+++|++|+++|+ .+..+|++|++|+|||||||||+|||++++|++||+++++||+||++++|||++||
T Consensus 3 ~L~~~F~~A~~~vk----------~l~~~p~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~g~s~eeA 72 (89)
T 3epy_A 3 ALQADFDRAAEDVR----------KLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDA 72 (89)
T ss_dssp HHHHHHHHHHHHGG----------GCSSCCCHHHHHHHHHHHHHHHTCSCCSCCTTTTCHHHHHHHHHHHTTTTCCHHHH
T ss_pred cHHHHHHHHHHHHH----------HcCCCcCHHHHHHHHHHHHHHhhCCCCCCCCcccchHHHHHHHHHHHhhCCCHHHH
Confidence 48999999999996 45678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcc
Q 008260 91 MRLFVKILEEEDPGWY 106 (572)
Q Consensus 91 ~~~yi~~~~~~~p~~~ 106 (572)
|++||+++++++|.|.
T Consensus 73 ~~~Yi~~v~~l~~ky~ 88 (89)
T 3epy_A 73 TSAYISKAKELIEKYG 88 (89)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9999999999998763
No 21
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=3.3e-30 Score=216.85 Aligned_cols=90 Identities=31% Similarity=0.604 Sum_probs=85.1
Q ss_pred hHHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCCHHHHH
Q 008260 12 YPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAM 91 (572)
Q Consensus 12 ~~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~~~~a~ 91 (572)
++++|++|+++|+ .+...+++|++|+|||||||||+|||++++|++||+++++||+||++++|||++|||
T Consensus 16 ~~~~F~~A~~~vk----------~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~AW~~l~gms~eeAm 85 (116)
T 2cqu_A 16 SQKDFENSMNQVK----------LLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAAR 85 (116)
T ss_dssp CHHHHHHHHHHHH----------HCCSCCCHHHHHHHHHHHTTTTTCSCCSCCCCTTCHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHHHHH----------HccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHhcCCCHHHHH
Confidence 6999999999996 456679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCccccccC
Q 008260 92 RLFVKILEEEDPGWYSRASN 111 (572)
Q Consensus 92 ~~yi~~~~~~~p~~~~~~~~ 111 (572)
++||++|++++|.|.....+
T Consensus 86 ~~YI~lv~~l~~~~~~~~~~ 105 (116)
T 2cqu_A 86 QNYVDLVSSLSPSLESSSQV 105 (116)
T ss_dssp HHHHHHHHHHCSCCCCCCCC
T ss_pred HHHHHHHHHHcccccccccc
Confidence 99999999999999987654
No 22
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=99.96 E-value=1.7e-30 Score=211.02 Aligned_cols=84 Identities=40% Similarity=0.721 Sum_probs=79.7
Q ss_pred HHHHHHHhHhcccCCCCCcccccc-CCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCCHHHHHH
Q 008260 14 ERFYAAASYAGFDGSPNSSAKELT-SKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAMR 92 (572)
Q Consensus 14 ~~F~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~~~~a~~ 92 (572)
++|++|++.|+ .+. .+|++|++|+|||||||||+|||++++||+||+++++||+||++++|||++|||+
T Consensus 12 ~~F~~A~~~vk----------~l~~~~ps~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~ 81 (96)
T 2lbb_A 12 DDFDAAVKYVS----------NTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNALRGMSTESAKE 81 (96)
T ss_dssp STHHHHHHHHH----------HCCCSCCCTTTTTHHHHHHHHTTTSSCCCCCCCSSCSHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHH----------hCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHhHHHHHHHHHhcCCCHHHHHH
Confidence 57999999996 445 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccc
Q 008260 93 LFVKILEEEDPGWYS 107 (572)
Q Consensus 93 ~yi~~~~~~~p~~~~ 107 (572)
+||++|++++|.|.+
T Consensus 82 ~YI~lv~~l~~~~~~ 96 (96)
T 2lbb_A 82 AYVKLLDTLAPSWRN 96 (96)
T ss_dssp HHHHHHHHHCGGGTC
T ss_pred HHHHHHHHHhchhcC
Confidence 999999999999963
No 23
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=99.96 E-value=3.5e-30 Score=207.15 Aligned_cols=84 Identities=29% Similarity=0.509 Sum_probs=79.8
Q ss_pred HHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCCHHHHHH
Q 008260 13 PERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAMR 92 (572)
Q Consensus 13 ~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~~~~a~~ 92 (572)
+++|++|+++|+ .+..+|++|++|+|||||||||+|||++++|++||+++++||+||++++|||++|||+
T Consensus 3 ~~~F~~A~~~vk----------~l~~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~ 72 (87)
T 2cb8_A 3 QAEFEKAAEEVR----------HLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMK 72 (87)
T ss_dssp HHHHHHHHHHGG----------GCSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHH
T ss_pred HHHHHHHHHHHH----------HccCCcCHHHHHHHHHHHHhhhhCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHH
Confidence 789999999996 4566899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcc
Q 008260 93 LFVKILEEEDPGWY 106 (572)
Q Consensus 93 ~yi~~~~~~~p~~~ 106 (572)
+||+++++++|.|.
T Consensus 73 ~Yi~~v~~l~~~~~ 86 (87)
T 2cb8_A 73 AYINKVEELKKKYG 86 (87)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998774
No 24
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=99.95 E-value=2.2e-29 Score=208.62 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=81.4
Q ss_pred CChHHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCCHHH
Q 008260 10 LAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTE 89 (572)
Q Consensus 10 ~~~~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~~~~ 89 (572)
.+++++|++|+++|+.. ++.+..+|++|++|+|||||||||+|||++++|++||+++++||+||++++|||++|
T Consensus 2 ~~~~~~F~~A~~~vk~l------~~~g~~~ps~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gmS~ee 75 (106)
T 3fp5_A 2 HMSKAKFDKAVEIVQSL------PKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWKSVEGTSKEV 75 (106)
T ss_dssp CCCHHHHHHHHHHHHHC------CSSSSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHH
T ss_pred CchHHHHHHHHHHHHhc------ccccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHHHHHccCCCHHH
Confidence 35689999999999742 233456899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 008260 90 AMRLFVKILEEEDPG 104 (572)
Q Consensus 90 a~~~yi~~~~~~~p~ 104 (572)
||++||++|++++|.
T Consensus 76 A~~~YI~~v~~l~~~ 90 (106)
T 3fp5_A 76 AYQKYVEKLLEILKK 90 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999887
No 25
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.3e-29 Score=210.31 Aligned_cols=94 Identities=31% Similarity=0.563 Sum_probs=82.2
Q ss_pred CChHHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCCHHH
Q 008260 10 LAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTE 89 (572)
Q Consensus 10 ~~~~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~~~~ 89 (572)
..++++|++|+++|+... +.+..++++|++|+|||||||||+|||++++|++||+++++||+||++++|||++|
T Consensus 6 ~~l~~~F~~A~~~vk~l~------~~g~~~ps~e~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~ee 79 (106)
T 2wh5_A 6 PDCQKQFQAAVSVIQNLP------KNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREE 79 (106)
T ss_dssp ---CHHHHHHHHHHHHSC------SSCSCCCCHHHHHHHHHHHHHHHHCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHH
T ss_pred hHHHHHHHHHHHHHHhcc------ccCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHhcCCCHHH
Confidence 347899999999997422 23345899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccccc
Q 008260 90 AMRLFVKILEEEDPGWYSRA 109 (572)
Q Consensus 90 a~~~yi~~~~~~~p~~~~~~ 109 (572)
||++||+++++++|.+..+.
T Consensus 80 A~~~YI~~v~~l~~k~~~t~ 99 (106)
T 2wh5_A 80 AMSAYITEMKLVAQKVIDTV 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhhccC
Confidence 99999999999999876654
No 26
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=99.95 E-value=3.6e-29 Score=210.16 Aligned_cols=90 Identities=31% Similarity=0.570 Sum_probs=81.8
Q ss_pred ChHHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCCHHHH
Q 008260 11 AYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEA 90 (572)
Q Consensus 11 ~~~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~~~~a 90 (572)
.|+++|++|+++|+. +++.+..+|++|++|+|||||||||+|||++++|++||+++++||+||++++|||++||
T Consensus 23 dLe~~F~~A~~~Vk~------l~~~g~~~ps~d~~L~LYaLyKQAT~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeA 96 (119)
T 3flv_A 23 MHETRFEAAVKVIQS------LPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEA 96 (119)
T ss_dssp HHHHHHHHHHHHHHH------HHHHSSCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHh------CcccCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHccCCCHHHH
Confidence 578999999999973 33444558999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcc
Q 008260 91 MRLFVKILEEEDPGWY 106 (572)
Q Consensus 91 ~~~yi~~~~~~~p~~~ 106 (572)
|++||+++++++++.-
T Consensus 97 m~~YI~~v~~l~~~~~ 112 (119)
T 3flv_A 97 MIAYVEEMKKIIETMP 112 (119)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhCC
Confidence 9999999999977653
No 27
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.95 E-value=4.3e-27 Score=263.98 Aligned_cols=243 Identities=14% Similarity=0.142 Sum_probs=186.4
Q ss_pred ceEEecccCCCCCCCCcceeEEEE--CCEEEEEccCCCCc------ccCcEEEEEcCCCcEEEeeecccccCCCCCCCCC
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVV--QDKMYIYGGNHNGR------YLSDMHILDLRSWAWSKIQAKAVAESTESPSPAL 242 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~--~~~lyv~GG~~~~~------~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~ 242 (572)
++|..+.+ + ||..|+++++ +++||++||..... ..+++++||+.+++|+.++.+.
T Consensus 176 ~~W~~~~~---~--P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~------------ 238 (656)
T 1k3i_A 176 GRWGPTID---L--PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV------------ 238 (656)
T ss_dssp CEEEEEEE---C--SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE------------
T ss_pred Ceeeeecc---C--CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC------------
Confidence 69998764 4 4466677777 89999999965432 3457999999999999998774
Q ss_pred CCCCccee--EEE-eCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCC
Q 008260 243 LTPCAGHS--LIP-WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAK 318 (572)
Q Consensus 243 p~~R~~hs--~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~ 318 (572)
.+|..|+ ++. .+++||++||.... ++++||+.+++|+.++ .+|.+|..|+++++ +++|||+||....
T Consensus 239 -~~~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~~~~ 309 (656)
T 1k3i_A 239 -TKHDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWSG 309 (656)
T ss_dssp -CSCCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCCS
T ss_pred -CCCCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCcccC
Confidence 5555443 443 58999999998653 7999999999999997 68999999999999 9999999995444
Q ss_pred CCCCCceEEEECCCCcEEEeeCCCC--CCC--------------------------------------------------
Q 008260 319 RSLLNDLHILDLETMTWDEIDAVGV--PPS-------------------------------------------------- 346 (572)
Q Consensus 319 ~~~~~~v~~yd~~t~~W~~v~~~g~--~p~-------------------------------------------------- 346 (572)
...++++++||+.+++|+.++..+. ++.
T Consensus 310 ~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~ 389 (656)
T 1k3i_A 310 GVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQ 389 (656)
T ss_dssp SSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECE
T ss_pred CcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccc
Confidence 4468999999999999999732110 011
Q ss_pred -------cccceEEEEE--cCCEEEEEeCCC---CCcCcC---cEEEEECCCCcEEeeccCCCCCCCccccEEEEECCcc
Q 008260 347 -------PRSDHAAAVH--AERYLLIFGGGS---HAACFN---DLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENW 411 (572)
Q Consensus 347 -------~R~~~~~~~~--~~~~lyv~GG~~---~~~~~~---~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~ 411 (572)
++..++++++ .+++|||+||.. ....++ .+++||+.+++|+.+. .+.+|.+|.+|+++++.+.
T Consensus 390 ~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g- 467 (656)
T 1k3i_A 390 SNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDG- 467 (656)
T ss_dssp ETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTS-
T ss_pred cccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCC-
Confidence 1223445442 356899999954 233445 7999999999999885 2358999999999988431
Q ss_pred ccceeeeeeccCCCCEEEEEcCCCC-------CccCcEEEEeCCCCcccccc
Q 008260 412 FLGLSLVVSSYSGEDVIVAFGGYNG-------RYNNEVHVLKPSHKSTLSSK 456 (572)
Q Consensus 412 ~iG~s~~~~~~~g~~~l~v~GG~~~-------~~~~dv~~yd~~~~~~~~~~ 456 (572)
+|||+||.+. ...+++++||+.++.|....
T Consensus 468 ---------------~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 468 ---------------STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp ---------------CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred ---------------CEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 7999999752 35789999999999887654
No 28
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.94 E-value=2.6e-26 Score=257.67 Aligned_cols=242 Identities=12% Similarity=0.106 Sum_probs=184.3
Q ss_pred eeeec----ceEEecccCCCCCCCCccee--EEE-ECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCC
Q 008260 166 SVVVY----DQWIAPPISGQRPKARYEHG--AAV-VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESP 238 (572)
Q Consensus 166 ~~~~~----~~W~~~~~~g~~p~~R~~~s--~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~ 238 (572)
.+.+| ++|+.++. +|.+|..|+ +++ .+++||++||.... ++++||+.+++|+.++++
T Consensus 220 ~~~~yd~~t~~w~~~~~---~~~~~~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~~W~~~~~~--------- 283 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTV---TVTKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDM--------- 283 (656)
T ss_dssp EEEEECTTTCCBCCCEE---EECSCCCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGTEEEECCCC---------
T ss_pred EEEEEeCCCCcEEeCcc---cCCCCCCccccccCCCCCCEEEeCCCCCC----ceEEecCcCCceeECCCC---------
Confidence 45555 59998875 666666554 443 58999999996543 799999999999998765
Q ss_pred CCCCCCCCcceeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCC--CCCC--------------------
Q 008260 239 SPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYG--KPPV-------------------- 295 (572)
Q Consensus 239 ~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g--~~p~-------------------- 295 (572)
+.+|.+|+++.+ +++||++||.......++++++||+.+++|+.++..+ +++.
T Consensus 284 ----~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~ 359 (656)
T 1k3i_A 284 ----QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKK 359 (656)
T ss_dssp ----SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGG
T ss_pred ----CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCC
Confidence 589999999999 9999999996544467889999999999999973211 1111
Q ss_pred -------------------------------------CCcceEEEE---ECCEEEEEecCCCC--CCCCC---ceEEEEC
Q 008260 296 -------------------------------------SRGGQSVTL---VGTSLVIFGGEDAK--RSLLN---DLHILDL 330 (572)
Q Consensus 296 -------------------------------------~R~~~~~~~---~~~~iyv~GG~~~~--~~~~~---~v~~yd~ 330 (572)
++..++++. .+++||++||.+.. ...++ .+++||+
T Consensus 360 g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~ 439 (656)
T 1k3i_A 360 GSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP 439 (656)
T ss_dssp GCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST
T ss_pred CcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC
Confidence 122344443 48999999997431 22345 7899999
Q ss_pred CCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCC------CcCcCcEEEEECCCCcEEeeccCCCCCCCccccEE
Q 008260 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH------AACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAG 404 (572)
Q Consensus 331 ~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~------~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~ 404 (572)
.+++|+.+. .+.+|.+|..|+++++.+++|||+||.+. ...++++++||+.+++|+.+. .++.+|.+|++
T Consensus 440 ~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~---~~~~~R~~hs~ 515 (656)
T 1k3i_A 440 GTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN---PNSIVRVYHSI 515 (656)
T ss_dssp TSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC---CCSSCCCTTEE
T ss_pred CCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC---CCCCccccccH
Confidence 999999986 22358999999999986667999999653 355788999999999999985 58899999998
Q ss_pred EEE--CCccccceeeeeeccCCCCEEEEEcCC-CCC---ccCcEEEEeCC
Q 008260 405 VTI--GENWFLGLSLVVSSYSGEDVIVAFGGY-NGR---YNNEVHVLKPS 448 (572)
Q Consensus 405 ~~~--~~~~~iG~s~~~~~~~g~~~l~v~GG~-~~~---~~~dv~~yd~~ 448 (572)
+++ ++ +||++||. ++. ...++++|.|.
T Consensus 516 a~ll~dg-----------------~v~v~GG~~~~~~~~~~~~~e~~~Pp 548 (656)
T 1k3i_A 516 SLLLPDG-----------------RVFNGGGGLCGDCTTNHFDAQIFTPN 548 (656)
T ss_dssp EEECTTS-----------------CEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred hhcCCCc-----------------EEEecCCCCCCCCCCCeeEEEEEeCh
Confidence 877 44 79999995 222 23467777764
No 29
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.96 E-value=0.0029 Score=60.74 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=108.1
Q ss_pred CCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEecc
Q 008260 185 ARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGH 264 (572)
Q Consensus 185 ~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~ 264 (572)
.-+-+++...++.||+-.|..+. +.+.++|+.+++-...-.+ +...++.+++..+++||+....
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g~---S~v~~vD~~tgkv~~~~~l-------------~~~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETGR---SSVRKVDLETGRILQRAEV-------------PPPYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTTS---CEEEEEETTTCCEEEEEEC-------------CTTCCEEEEEEETTEEEEEESS
T ss_pred ccccccEEEECCEEEEECCCCCC---ceEEEEECCCCCEEEEEeC-------------CCCcceeEEEEeCCEEEEEEee
Confidence 34446778889999999985443 4689999999887665443 3555778888889999999544
Q ss_pred CCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCC
Q 008260 265 TKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP 344 (572)
Q Consensus 265 ~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~ 344 (572)
.+.+++||+.+.+-..-- +.+..+.+++..+++||+.-| .+.++.+|+++.+-..--..+..
T Consensus 84 ------~~~v~v~D~~tl~~~~ti-----~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~ 145 (243)
T 3mbr_X 84 ------NHEGFVYDLATLTPRARF-----RYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAG 145 (243)
T ss_dssp ------SSEEEEEETTTTEEEEEE-----ECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEET
T ss_pred ------CCEEEEEECCcCcEEEEE-----eCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccC
Confidence 347999999886643332 122356777777888998754 35699999998765332222111
Q ss_pred CCcccce-EEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 345 PSPRSDH-AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 345 p~~R~~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
+.+.... -.... ++.||+---. .++|.+.|+++.+-..
T Consensus 146 g~~~~~lNeLe~~-~G~lyanvw~-----s~~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 146 GRPLDNLNELEWV-NGELLANVWL-----TSRIARIDPASGKVVA 184 (243)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETT-----TTEEEEECTTTCBEEE
T ss_pred CcccccceeeEEe-CCEEEEEECC-----CCeEEEEECCCCCEEE
Confidence 2222221 22233 5568864322 3689999999987543
No 30
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.91 E-value=0.0076 Score=60.45 Aligned_cols=208 Identities=9% Similarity=0.025 Sum_probs=123.1
Q ss_pred CCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEE-eeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEE
Q 008260 183 PKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSK-IQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLS 260 (572)
Q Consensus 183 p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv 260 (572)
+.....+.++..++++|+... ..+.+.++|+.+.+-.. ++.. ..-+.++. .++++|+
T Consensus 41 ~lg~~~~~i~~~~~~lyv~~~-----~~~~v~viD~~t~~~~~~i~~~----------------~~p~~i~~~~~g~lyv 99 (328)
T 3dsm_A 41 KLGDVAQSMVIRDGIGWIVVN-----NSHVIFAIDINTFKEVGRITGF----------------TSPRYIHFLSDEKAYV 99 (328)
T ss_dssp CCBSCEEEEEEETTEEEEEEG-----GGTEEEEEETTTCCEEEEEECC----------------SSEEEEEEEETTEEEE
T ss_pred ccCccceEEEEECCEEEEEEc-----CCCEEEEEECcccEEEEEcCCC----------------CCCcEEEEeCCCeEEE
Confidence 344555777788999999875 23579999999877633 3211 11223333 5789999
Q ss_pred EeccCCCCCcceeEEEEECCCCceEEeccCCCCC-CCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEee
Q 008260 261 IAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPP-VSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEID 339 (572)
Q Consensus 261 ~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p-~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~ 339 (572)
.... ...|.++|+.+.+-...-..+... ....-+.+++.+++||+..-. ..+.+.++|+.+.+....-
T Consensus 100 ~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~-----~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 100 TQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS-----YQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT-----TCCEEEEEETTTTEEEEEE
T ss_pred EECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC-----CCCEEEEEECCCCeEEEEE
Confidence 8753 247999999988755322222200 000223444478999998520 1457999999998765443
Q ss_pred CCCCCCCcccceEEEEEcCCEEEEEeCCCCCcC-----cCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccc
Q 008260 340 AVGVPPSPRSDHAAAVHAERYLLIFGGGSHAAC-----FNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLG 414 (572)
Q Consensus 340 ~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~-----~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG 414 (572)
..+ ..| +..++..++.+|+......... .+.++++|+++.+....-. ++....-..++...+
T Consensus 169 ~~g--~~p---~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~---~~~g~~p~~la~~~d----- 235 (328)
T 3dsm_A 169 TIG--IQP---TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK---FKLGDWPSEVQLNGT----- 235 (328)
T ss_dssp ECS--SCB---CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE---CCTTCCCEEEEECTT-----
T ss_pred EcC--CCc---cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe---cCCCCCceeEEEecC-----
Confidence 332 222 3344455667887754221111 2679999999887653211 222222234444433
Q ss_pred eeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCcc
Q 008260 415 LSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKST 452 (572)
Q Consensus 415 ~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~~ 452 (572)
.+.||+..+ .++++|+.+...
T Consensus 236 ----------~~~lyv~~~-------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 236 ----------RDTLYWINN-------DIWRMPVEADRV 256 (328)
T ss_dssp ----------SCEEEEESS-------SEEEEETTCSSC
T ss_pred ----------CCEEEEEcc-------EEEEEECCCCce
Confidence 347888654 799999987654
No 31
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=97.76 E-value=3.8e-05 Score=72.36 Aligned_cols=81 Identities=22% Similarity=0.178 Sum_probs=65.1
Q ss_pred HHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCC--CCCCCChh------------hhHhHHHhh
Q 008260 15 RFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVP--KPSSWSPV------------EQSKWKSWQ 80 (572)
Q Consensus 15 ~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~--~p~~~~~~------------~~~k~~aW~ 80 (572)
-|.++.+.+- .+.-..+.|+.++|.||..||..||++.. .|+.++.. .+..+++|+
T Consensus 21 ~y~Q~~~dil----------~g~~~~~~~~a~~Laal~~qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~i~~~~~ 90 (206)
T 1mix_A 21 LYVQARDDIL----------NGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHK 90 (206)
T ss_dssp HHHHHHHHHH----------TTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHH----------CCccccCHHHHHHHHHHhhhheecCCCcccccCCccchHhhCCHHHhhcccHHHHHHHHH
Confidence 3556666663 23557899999999999999999999865 46665544 677899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCcc
Q 008260 81 GLGNMATTEAMRLFVKILEEEDPGWY 106 (572)
Q Consensus 81 ~~~~~~~~~a~~~yi~~~~~~~p~~~ 106 (572)
+++|||++|||.+|++++.++ |.|.
T Consensus 91 ~~~g~s~~~A~~~yL~~~~~l-~~yG 115 (206)
T 1mix_A 91 NCGNMSEIEAKVRYVKLARSL-KTYG 115 (206)
T ss_dssp HTTTCCHHHHHHHHHHHHHHS-TTTT
T ss_pred HccCCCHHHHHHHHHHHHHhC-cccC
Confidence 999999999999999999876 5443
No 32
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.62 E-value=0.01 Score=57.44 Aligned_cols=161 Identities=14% Similarity=0.084 Sum_probs=102.9
Q ss_pred cceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCC
Q 008260 187 YEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (572)
Q Consensus 187 ~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 266 (572)
+-.++...++.||+-.|..+. +.+.++|+.+.+-...-.+ +...++..++..+++||+....
T Consensus 44 ftqGL~~~~~~LyestG~~g~---S~v~~vD~~Tgkv~~~~~l-------------~~~~FgeGit~~g~~ly~ltw~-- 105 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNGR---SSIRKVDIESGKTLQQIEL-------------GKRYFGEGISDWKDKIVGLTWK-- 105 (262)
T ss_dssp EEEEEEEETTEEEEEEEETTE---EEEEEECTTTCCEEEEEEC-------------CTTCCEEEEEEETTEEEEEESS--
T ss_pred ccceEEEECCEEEEECCCCCC---ceEEEEECCCCcEEEEEec-------------CCccceeEEEEeCCEEEEEEee--
Confidence 335566668999999984432 3689999999876654443 3445667788889999999553
Q ss_pred CCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEE-eeCCCCCC
Q 008260 267 DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDE-IDAVGVPP 345 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-v~~~g~~p 345 (572)
.+.+++||+.+.+-..-- +.+-.+.+++..+++||+.-| .+.++.+|+.+.+-.. +... ...
T Consensus 106 ----~~~v~v~D~~t~~~~~ti-----~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~-~~g 168 (262)
T 3nol_A 106 ----NGLGFVWNIRNLRQVRSF-----NYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVT-AHG 168 (262)
T ss_dssp ----SSEEEEEETTTCCEEEEE-----ECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECE-ETT
T ss_pred ----CCEEEEEECccCcEEEEE-----ECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEec-cCC
Confidence 247999999886643322 112256677777888888654 3569999999876433 3321 111
Q ss_pred Ccccce-EEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 346 SPRSDH-AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 346 ~~R~~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
.+.... -+... ++.||+---. .++|.+.|+++.+-..
T Consensus 169 ~~~~~lNELe~~-~G~lyan~w~-----~~~I~vIDp~tG~V~~ 206 (262)
T 3nol_A 169 EELPELNELEWV-DGEIFANVWQ-----TNKIVRIDPETGKVTG 206 (262)
T ss_dssp EECCCEEEEEEE-TTEEEEEETT-----SSEEEEECTTTCBEEE
T ss_pred ccccccceeEEE-CCEEEEEEcc-----CCeEEEEECCCCcEEE
Confidence 121111 12333 5578863311 3689999999987654
No 33
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.53 E-value=0.0089 Score=57.93 Aligned_cols=159 Identities=13% Similarity=0.014 Sum_probs=102.1
Q ss_pred cceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCC
Q 008260 187 YEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (572)
Q Consensus 187 ~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 266 (572)
+..++...++.||+..|..+. +.++|+.+.+-..-- + +...++..++..+++||+....
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~~-l-------------~~~~FgeGit~~g~~Ly~ltw~-- 114 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGT-----LRQLSLESAQPVWME-R-------------LGNIFAEGLASDGERLYQLTWT-- 114 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTE-----EEECCSSCSSCSEEE-E-------------CTTCCEEEEEECSSCEEEEESS--
T ss_pred ccceEEEECCEEEEEcCCCCE-----EEEEECCCCcEEeEE-C-------------CCCcceeEEEEeCCEEEEEEcc--
Confidence 446677779999999984332 899999987654433 3 3445667788889999998543
Q ss_pred CCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCC
Q 008260 267 DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPS 346 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~ 346 (572)
.+.+++||+.+.+-..--+ .+-.+.+++..+++||+.-| .+.++.+|+++.+-..--..+..+.
T Consensus 115 ----~~~v~V~D~~Tl~~~~ti~-----~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~ 178 (268)
T 3nok_A 115 ----EGLLFTWSGMPPQRERTTR-----YSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQ 178 (268)
T ss_dssp ----SCEEEEEETTTTEEEEEEE-----CSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTE
T ss_pred ----CCEEEEEECCcCcEEEEEe-----CCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCc
Confidence 2479999998866443221 12345777888899999865 3569999999876433222211122
Q ss_pred cccce-EEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 347 PRSDH-AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 347 ~R~~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
+.... -.... ++.||+-- + ..++|.+.|+++.+-..
T Consensus 179 ~v~~lNeLe~~-dG~lyanv-w----~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 179 PVELINELECA-NGVIYANI-W----HSSDVLEIDPATGTVVG 215 (268)
T ss_dssp ECCCEEEEEEE-TTEEEEEE-T----TCSEEEEECTTTCBEEE
T ss_pred ccccccccEEe-CCEEEEEE-C----CCCeEEEEeCCCCcEEE
Confidence 22111 12223 55688532 1 13689999999987543
No 34
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.53 E-value=0.028 Score=56.23 Aligned_cols=208 Identities=9% Similarity=-0.003 Sum_probs=115.1
Q ss_pred eeEEE-ECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCC
Q 008260 189 HGAAV-VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD 267 (572)
Q Consensus 189 ~s~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~ 267 (572)
+.++. -+++||+.... .+.+.++|+.+.+-...-.... .. .....-+.++..++++|+..-.
T Consensus 87 ~~i~~~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~~i~~g~--------~~-~~~~~p~~i~~~~~~lyv~~~~--- 149 (328)
T 3dsm_A 87 RYIHFLSDEKAYVTQIW-----DYRIFIINPKTYEITGYIECPD--------MD-MESGSTEQMVQYGKYVYVNCWS--- 149 (328)
T ss_dssp EEEEEEETTEEEEEEBS-----CSEEEEEETTTTEEEEEEECTT--------CC-TTTCBCCCEEEETTEEEEEECT---
T ss_pred cEEEEeCCCeEEEEECC-----CCeEEEEECCCCeEEEEEEcCC--------cc-ccCCCcceEEEECCEEEEEcCC---
Confidence 34444 67899998742 3579999999987553222210 00 0000122344478999998421
Q ss_pred CCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCC----CCceEEEECCCCcEEEeeCCC
Q 008260 268 PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSL----LNDLHILDLETMTWDEIDAVG 342 (572)
Q Consensus 268 ~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~----~~~v~~yd~~t~~W~~v~~~g 342 (572)
..+.|.++|+.+.+....-..+..| +.++.. ++++|+.......... .+.++++|+.+.+....-..
T Consensus 150 --~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~- 221 (328)
T 3dsm_A 150 --YQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF- 221 (328)
T ss_dssp --TCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC-
T ss_pred --CCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec-
Confidence 1347999999998765443222222 233333 5788877533211111 36799999998886543222
Q ss_pred CCCCcccceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCC-CccccEEEEECCccccceeeeee
Q 008260 343 VPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPT-PRAGHAGVTIGENWFLGLSLVVS 420 (572)
Q Consensus 343 ~~p~~R~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~-~R~~~~~~~~~~~~~iG~s~~~~ 420 (572)
+....-...++.. ++.||+..+ .++++|+.+.+...... .+. ...-.++++..+
T Consensus 222 --~~g~~p~~la~~~d~~~lyv~~~--------~v~~~d~~t~~~~~~~~---~~~~~~~p~gi~vdp~----------- 277 (328)
T 3dsm_A 222 --KLGDWPSEVQLNGTRDTLYWINN--------DIWRMPVEADRVPVRPF---LEFRDTKYYGLTVNPN----------- 277 (328)
T ss_dssp --CTTCCCEEEEECTTSCEEEEESS--------SEEEEETTCSSCCSSCS---BCCCSSCEEEEEECTT-----------
T ss_pred --CCCCCceeEEEecCCCEEEEEcc--------EEEEEECCCCceeeeee---ecCCCCceEEEEEcCC-----------
Confidence 2222334455543 567888643 79999998876532111 111 122233444322
Q ss_pred ccCCCCEEEEEcCCCCCccCcEEEEeCCC
Q 008260 421 SYSGEDVIVAFGGYNGRYNNEVHVLKPSH 449 (572)
Q Consensus 421 ~~~g~~~l~v~GG~~~~~~~dv~~yd~~~ 449 (572)
.+.||+....+-...+.|.+||+..
T Consensus 278 ----~g~lyva~~~~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 278 ----NGEVYVADAIDYQQQGIVYRYSPQG 302 (328)
T ss_dssp ----TCCEEEEECTTSSSEEEEEEECTTC
T ss_pred ----CCeEEEEcccccccCCEEEEECCCC
Confidence 3378887632222346799999873
No 35
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.48 E-value=0.036 Score=53.93 Aligned_cols=203 Identities=13% Similarity=-0.041 Sum_probs=119.6
Q ss_pred eeEEEEC-CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCC
Q 008260 189 HGAAVVQ-DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD 267 (572)
Q Consensus 189 ~s~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~ 267 (572)
++++..+ +.||+..|..+ .+.+.++|+.+++-...-+. +....+..++..+++||+..-.
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l-------------~~~~fgeGi~~~g~~lyv~t~~--- 84 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKM-------------DDSYFGEGLTLLNEKLYQVVWL--- 84 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEEC-------------CTTCCEEEEEEETTEEEEEETT---
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEec-------------CCCcceEEEEEeCCEEEEEEec---
Confidence 6666666 89999877322 25799999999886554332 2334556777788999999543
Q ss_pred CCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCc
Q 008260 268 PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSP 347 (572)
Q Consensus 268 ~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~ 347 (572)
.+.+++||+.+.+-..--+.+ +| .+.+.+..++++|+.-| .+.++++|+.+.+-..--..+..+.+
T Consensus 85 ---~~~v~viD~~t~~v~~~i~~g-~~---~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p 150 (266)
T 2iwa_A 85 ---KNIGFIYDRRTLSNIKNFTHQ-MK---DGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHR 150 (266)
T ss_dssp ---CSEEEEEETTTTEEEEEEECC-SS---SCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEE
T ss_pred ---CCEEEEEECCCCcEEEEEECC-CC---CeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcc
Confidence 347999999876533222112 12 34556666788998643 46799999998764333222211222
Q ss_pred cc-ceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe-eccCCC--------CCCCccccEEEEECCccccceee
Q 008260 348 RS-DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR-PTQQGE--------IPTPRAGHAGVTIGENWFLGLSL 417 (572)
Q Consensus 348 R~-~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-v~~~g~--------~p~~R~~~~~~~~~~~~~iG~s~ 417 (572)
.. -..+... ++.||+--.. .++|.+.|+++.+-.. ++..+. .+..-.-++.+...+
T Consensus 151 ~~~~nele~~-dg~lyvn~~~-----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~-------- 216 (266)
T 2iwa_A 151 VIRLNELEYI-NGEVWANIWQ-----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE-------- 216 (266)
T ss_dssp CCCEEEEEEE-TTEEEEEETT-----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT--------
T ss_pred cccceeEEEE-CCEEEEecCC-----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCC--------
Confidence 11 1123333 5678875432 2689999999886433 221110 011112234455444
Q ss_pred eeeccCCCCEEEEEcCCCCCccCcEEEEeCCC
Q 008260 418 VVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSH 449 (572)
Q Consensus 418 ~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~ 449 (572)
.+++||-|+.. +.+++.++..
T Consensus 217 -------~~~lfVTgk~~----~~v~~i~l~~ 237 (266)
T 2iwa_A 217 -------NKRIFVTGKLW----PKLFEIKLHL 237 (266)
T ss_dssp -------TTEEEEEETTC----SEEEEEEEEE
T ss_pred -------CCEEEEECCCC----CeEEEEEEec
Confidence 45899998855 4577776533
No 36
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.05 E-value=0.059 Score=51.53 Aligned_cols=158 Identities=16% Similarity=0.100 Sum_probs=101.9
Q ss_pred CcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCce
Q 008260 246 CAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDL 325 (572)
Q Consensus 246 R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v 325 (572)
-+-+.+...++.||+-.|..+. +.+..+|+.+.+-..-. .+|..-.+.+.+..+++||+.... .+.+
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~------~~~v 87 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR------NHEG 87 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------SSEE
T ss_pred cccccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee------CCEE
Confidence 3445677778999999997543 57999999998765544 355566778888899999998653 4679
Q ss_pred EEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe-eccCCCCCCC-ccccE
Q 008260 326 HILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR-PTQQGEIPTP-RAGHA 403 (572)
Q Consensus 326 ~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-v~~~g~~p~~-R~~~~ 403 (572)
++||+++.+-..-- +.+..+.+.+. .++.||+.-|. +.++.+|+++.+-.. +... ..+.+ +.-.-
T Consensus 88 ~v~D~~tl~~~~ti-----~~~~~Gwglt~-dg~~L~vSdgs------~~l~~iDp~t~~~~~~I~V~-~~g~~~~~lNe 154 (243)
T 3mbr_X 88 FVYDLATLTPRARF-----RYPGEGWALTS-DDSHLYMSDGT------AVIRKLDPDTLQQVGSIKVT-AGGRPLDNLNE 154 (243)
T ss_dssp EEEETTTTEEEEEE-----ECSSCCCEEEE-CSSCEEEECSS------SEEEEECTTTCCEEEEEECE-ETTEECCCEEE
T ss_pred EEEECCcCcEEEEE-----eCCCCceEEee-CCCEEEEECCC------CeEEEEeCCCCeEEEEEEEc-cCCccccccee
Confidence 99999887643332 22234455554 45568887652 679999999876543 3221 11111 11112
Q ss_pred EEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 404 GVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 404 ~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
+..+++ +||+-- -..++|.+.|+.+.
T Consensus 155 Le~~~G-----------------~lyanv----w~s~~I~vIDp~tG 180 (243)
T 3mbr_X 155 LEWVNG-----------------ELLANV----WLTSRIARIDPASG 180 (243)
T ss_dssp EEEETT-----------------EEEEEE----TTTTEEEEECTTTC
T ss_pred eEEeCC-----------------EEEEEE----CCCCeEEEEECCCC
Confidence 333333 666422 13478999999886
No 37
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.95 E-value=0.044 Score=55.44 Aligned_cols=184 Identities=13% Similarity=0.135 Sum_probs=102.5
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-C-CEEEEEeccCCCCCccee
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-E-NKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~-~~iyv~GG~~~~~~~~~~ 273 (572)
+.+|+.|+.+ +.+.++|+.+++-...-.. ...-.+++.. + ..||+.|+.+. .
T Consensus 2 ~~l~vs~~~d-----~~v~v~d~~~~~~~~~~~~---------------~~~~~~~~~s~dg~~l~~~~~~d~------~ 55 (391)
T 1l0q_A 2 TFAYIANSES-----DNISVIDVTSNKVTATIPV---------------GSNPMGAVISPDGTKVYVANAHSN------D 55 (391)
T ss_dssp EEEEEEETTT-----TEEEEEETTTTEEEEEEEC---------------SSSEEEEEECTTSSEEEEEEGGGT------E
T ss_pred CEEEEEcCCC-----CEEEEEECCCCeEEEEeec---------------CCCcceEEECCCCCEEEEECCCCC------e
Confidence 4577777632 3689999988765443221 1111233332 3 46777776543 6
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
+.+||+.+.+....-.. +. .-.+++.. ++.||+.|.. .+.+.+||+.+.+-...-.. .....
T Consensus 56 i~v~d~~~~~~~~~~~~---~~--~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~-----~~~~~ 119 (391)
T 1l0q_A 56 VSIIDTATNNVIATVPA---GS--SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKT-----GKSPL 119 (391)
T ss_dssp EEEEETTTTEEEEEEEC---SS--SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEEC-----SSSEE
T ss_pred EEEEECCCCeEEEEEEC---CC--CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeC-----CCCcc
Confidence 89999988776544321 11 22333333 4456666543 24599999998876544322 12223
Q ss_pred EEEEEcC-CEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEE
Q 008260 352 AAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVA 430 (572)
Q Consensus 352 ~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v 430 (572)
+.+...+ +.||+.++.+ +.++++|+.+.+....-..+ ..-..++...+ ...||+
T Consensus 120 ~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~d---------------g~~l~~ 174 (391)
T 1l0q_A 120 GLALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVG-----RSPKGIAVTPD---------------GTKVYV 174 (391)
T ss_dssp EEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECC-----SSEEEEEECTT---------------SSEEEE
T ss_pred eEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEecC-----CCcceEEECCC---------------CCEEEE
Confidence 4444433 4577777643 47999999988765542211 11123333333 336767
Q ss_pred EcCCCCCccCcEEEEeCCCC
Q 008260 431 FGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 431 ~GG~~~~~~~dv~~yd~~~~ 450 (572)
.++.+ ..+.+||+.+.
T Consensus 175 ~~~~~----~~v~~~d~~~~ 190 (391)
T 1l0q_A 175 ANFDS----MSISVIDTVTN 190 (391)
T ss_dssp EETTT----TEEEEEETTTT
T ss_pred EeCCC----CEEEEEECCCC
Confidence 66544 34788887665
No 38
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.19 Score=49.96 Aligned_cols=195 Identities=11% Similarity=0.122 Sum_probs=102.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--C--CEEEEEeccCCCCCc
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E--NKLLSIAGHTKDPSE 270 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~--~~iyv~GG~~~~~~~ 270 (572)
++.+++.|+.+ ..+.+||+....+..+.... ........+.+ + +.+++.|+.+.
T Consensus 22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~~~l~s~~~dg---- 79 (379)
T 3jrp_A 22 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLT-------------GHEGPVWRVDWAHPKFGTILASCSYDG---- 79 (379)
T ss_dssp SSSEEEEEETT-----SCEEEEEEETTEEEEEEEEC-------------CCSSCEEEEEECCGGGCSEEEEEETTS----
T ss_pred CCCEEEEEECC-----CcEEEEecCCCcceeeeEec-------------CCCCcEEEEEeCCCCCCCEEEEeccCC----
Confidence 35566677632 35888888877777665543 11112222333 2 67777777754
Q ss_pred ceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-C--CEEEEEecCCCCCCCCCceEEEECCCCcE-EEeeCCCCCCC
Q 008260 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-G--TSLVIFGGEDAKRSLLNDLHILDLETMTW-DEIDAVGVPPS 346 (572)
Q Consensus 271 ~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~--~~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~v~~~g~~p~ 346 (572)
.|.+||..+.+|..+.... .....-.++... . +.+++.|+.+ ..+.+||+.+..- ...... ..
T Consensus 80 --~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~---~~ 146 (379)
T 3jrp_A 80 --KVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIID---AH 146 (379)
T ss_dssp --CEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEE---CC
T ss_pred --EEEEEEcCCCceeEeeeec--CCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEec---CC
Confidence 4889999999887765321 111122223333 2 5677777753 3588888876532 111111 11
Q ss_pred cccceEEEEEc-------------CCEEEEEeCCCCCcCcCcEEEEECCCC--cEEeeccCCCCCCCccccEEEEECCcc
Q 008260 347 PRSDHAAAVHA-------------ERYLLIFGGGSHAACFNDLHVLDLQTM--EWSRPTQQGEIPTPRAGHAGVTIGENW 411 (572)
Q Consensus 347 ~R~~~~~~~~~-------------~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~v~~~g~~p~~R~~~~~~~~~~~~ 411 (572)
...-.+.+... ++.+++.|+.+ ..+.+||+.+. .|..+.. +........++.+..
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~h~~~v~~~~~sp-- 216 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLEST---LEGHSDWVRDVAWSP-- 216 (379)
T ss_dssp TTCEEEEEECCCC----------CTTCEEEEEETT-----SCEEEEEEETTTTEEEEEEE---ECCCSSCEEEEEECC--
T ss_pred CCceEEEEEcCccccccccccCCCCCCEEEEEeCC-----CeEEEEEecCCCcceeeEEE---EecccCcEeEEEECC--
Confidence 11122233332 34578888765 35777877543 3544321 111111122233321
Q ss_pred ccceeeeeeccCCC--CEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 412 FLGLSLVVSSYSGE--DVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 412 ~iG~s~~~~~~~g~--~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
+ . +.+++.|+.++. +.+||..+.
T Consensus 217 -----------~-~~~~~~l~s~~~dg~----i~iwd~~~~ 241 (379)
T 3jrp_A 217 -----------T-VLLRSYLASVSQDRT----CIIWTQDNE 241 (379)
T ss_dssp -----------C-CSSSEEEEEEETTSC----EEEEEESST
T ss_pred -----------C-CCCCCeEEEEeCCCE----EEEEeCCCC
Confidence 1 1 378888887765 778887664
No 39
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.72 E-value=0.32 Score=50.17 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=84.2
Q ss_pred EEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECC
Q 008260 252 IPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLE 331 (572)
Q Consensus 252 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 331 (572)
+..++..++.|+.++ .+.+||..+.+-...-. .......+....+.+++.|+.+ ..+.+||+.
T Consensus 285 ~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~d------g~i~vwd~~ 347 (445)
T 2ovr_B 285 LQFDGIHVVSGSLDT------SIRVWDVETGNCIHTLT-----GHQSLTSGMELKDNILVSGNAD------STVKIWDIK 347 (445)
T ss_dssp EEECSSEEEEEETTS------CEEEEETTTCCEEEEEC-----CCCSCEEEEEEETTEEEEEETT------SCEEEEETT
T ss_pred EEECCCEEEEEeCCC------eEEEEECCCCCEEEEEc-----CCcccEEEEEEeCCEEEEEeCC------CeEEEEECC
Confidence 334777777777654 48889988765332211 1111122233345566667653 348899987
Q ss_pred CCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCcc
Q 008260 332 TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENW 411 (572)
Q Consensus 332 t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~ 411 (572)
+.+-...-.. .........++.+.++ +++.|+.+ ..+.+||+.+.+....-..............+.+..
T Consensus 348 ~~~~~~~~~~--~~~~~~~v~~~~~~~~-~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-- 417 (445)
T 2ovr_B 348 TGQCLQTLQG--PNKHQSAVTCLQFNKN-FVITSSDD-----GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-- 417 (445)
T ss_dssp TCCEEEEECS--TTSCSSCEEEEEECSS-EEEEEETT-----SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS--
T ss_pred CCcEEEEEcc--CCCCCCCEEEEEECCC-EEEEEeCC-----CeEEEEECCCCceeeeeeccccCCCCceEEEEEecC--
Confidence 7653322211 0111222233444454 77777754 568999998876543210000000111111222222
Q ss_pred ccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 412 FLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 412 ~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
.+.+++.|+.+|.....+++||...+
T Consensus 418 -------------~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 418 -------------TKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp -------------SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred -------------CEEEEEEcccCCCCccEEEEEECCCC
Confidence 33788899988876667889987653
No 40
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.70 E-value=0.13 Score=52.72 Aligned_cols=144 Identities=16% Similarity=0.090 Sum_probs=81.4
Q ss_pred cEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccC
Q 008260 212 DMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY 290 (572)
Q Consensus 212 ~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 290 (572)
.++++|+.+..+..+.... ....-.+++.. ++.+++.++.+. .+.+||+.+.+.......
T Consensus 102 ~l~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~s~~~~~~~~~~~~~------~i~~~d~~~g~~~~~~~~ 162 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFK-------------TGFQPKSVRFIDNTRLAIPLLEDE------GMDVLDINSGQTVRLSPP 162 (433)
T ss_dssp CEEECCBTTCSEEEEEEEE-------------CSSCBCCCEESSSSEEEEEBTTSS------SEEEEETTTCCEEEECCC
T ss_pred EEEEECCCCCcceEEEEEc-------------CCCCceEEEEeCCCeEEEEeCCCC------eEEEEECCCCeEeeecCc
Confidence 6899998887776665543 11111222222 678888776542 589999998876654311
Q ss_pred CCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEc-CCEEEEEeCC
Q 008260 291 GKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGG 367 (572)
Q Consensus 291 g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~-~~~lyv~GG~ 367 (572)
+..........++.+ ++.+|+.|+.+ ..+.+||+.+.+....-.. ....-.+.+... ++.+|+.++.
T Consensus 163 ~~~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~ 232 (433)
T 3bws_A 163 EKYKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDL----TGKWSKILLYDPIRDLVYCSNWI 232 (433)
T ss_dssp HHHHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEEC----SSSSEEEEEEETTTTEEEEEETT
T ss_pred ccccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEcC----CCCCeeEEEEcCCCCEEEEEecC
Confidence 111111111222333 67888888743 4589999987654332211 112223334443 4567777654
Q ss_pred CCCcCcCcEEEEECCCCcEEee
Q 008260 368 SHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 368 ~~~~~~~~v~~yd~~t~~W~~v 389 (572)
+ ..+.+||+.+.+....
T Consensus 233 ~-----~~i~~~d~~~~~~~~~ 249 (433)
T 3bws_A 233 S-----EDISVIDRKTKLEIRK 249 (433)
T ss_dssp T-----TEEEEEETTTTEEEEE
T ss_pred C-----CcEEEEECCCCcEEEE
Confidence 3 4699999988876543
No 41
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.47 E-value=0.17 Score=51.09 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=101.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
++.||+.|.. -+.+++||+.+++-...... ...-.+++.. +..||+.++.+ .
T Consensus 85 g~~l~~~~~~-----~~~v~v~d~~~~~~~~~~~~---------------~~~~~~~~~s~dg~~l~~~~~~~------~ 138 (391)
T 1l0q_A 85 GKQVYVTNMA-----SSTLSVIDTTSNTVAGTVKT---------------GKSPLGLALSPDGKKLYVTNNGD------K 138 (391)
T ss_dssp SSEEEEEETT-----TTEEEEEETTTTEEEEEEEC---------------SSSEEEEEECTTSSEEEEEETTT------T
T ss_pred CCEEEEEECC-----CCEEEEEECCCCeEEEEEeC---------------CCCcceEEECCCCCEEEEEeCCC------C
Confidence 3556666542 14699999998876544321 1112233332 34677776543 2
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccc
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~ 350 (572)
.+.+||+.+.+....-..+ ..-..++.. ++.||+.++.+ +.+.+||+.+.+....... ...-
T Consensus 139 ~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~-----~~~~ 202 (391)
T 1l0q_A 139 TVSVINTVTKAVINTVSVG-----RSPKGIAVTPDGTKVYVANFDS------MSISVIDTVTNSVIDTVKV-----EAAP 202 (391)
T ss_dssp EEEEEETTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEEC-----SSEE
T ss_pred EEEEEECCCCcEEEEEecC-----CCcceEEECCCCCEEEEEeCCC------CEEEEEECCCCeEEEEEec-----CCCc
Confidence 6999999888765543221 111333333 44677776542 4599999988765444322 1122
Q ss_pred eEEEEEcC-CEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEE
Q 008260 351 HAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIV 429 (572)
Q Consensus 351 ~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~ 429 (572)
.+.+...+ +.|++.+. .. .-..+.+||+.+.+-...-. ....-.+++...+ ...||
T Consensus 203 ~~~~~~~~g~~l~~~~~-~~--~~~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~s~d---------------g~~l~ 259 (391)
T 1l0q_A 203 SGIAVNPEGTKAYVTNV-DK--YFNTVSMIDTGTNKITARIP-----VGPDPAGIAVTPD---------------GKKVY 259 (391)
T ss_dssp EEEEECTTSSEEEEEEE-CS--SCCEEEEEETTTTEEEEEEE-----CCSSEEEEEECTT---------------SSEEE
T ss_pred cceEECCCCCEEEEEec-Cc--CCCcEEEEECCCCeEEEEEe-----cCCCccEEEEccC---------------CCEEE
Confidence 23333334 44555442 10 12579999998875433211 1111122333332 33677
Q ss_pred EEcCCCCCccCcEEEEeCCCCc
Q 008260 430 AFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 430 v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
+.++.+ +.+.+||+.+..
T Consensus 260 ~s~~~d----~~v~v~d~~~~~ 277 (391)
T 1l0q_A 260 VALSFX----NTVSVIDTATNT 277 (391)
T ss_dssp EEETTT----TEEEEEETTTTE
T ss_pred EEcCCC----CEEEEEECCCCc
Confidence 776655 458889987753
No 42
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.45 E-value=0.14 Score=49.32 Aligned_cols=115 Identities=9% Similarity=0.028 Sum_probs=79.0
Q ss_pred ceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEE
Q 008260 248 GHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHI 327 (572)
Q Consensus 248 ~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 327 (572)
...+...++.||+-.|..+ .+.+.++|+.+.+-..-. .++..-.+.+.+..+++||+.... .+.+++
T Consensus 45 tqGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~------~~~v~v 111 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWK------NGLGFV 111 (262)
T ss_dssp EEEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------SSEEEE
T ss_pred cceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEee------CCEEEE
Confidence 3455556899999999754 357999999998755443 244445667788889999998653 467999
Q ss_pred EECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 328 LDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 328 yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
||+++.+-..--+ .+-.+.+.+. .++.||+.-|. +.++.+|+++.+-.
T Consensus 112 ~D~~t~~~~~ti~-----~~~eG~glt~-dg~~L~~SdGs------~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 112 WNIRNLRQVRSFN-----YDGEGWGLTH-NDQYLIMSDGT------PVLRFLDPESLTPV 159 (262)
T ss_dssp EETTTCCEEEEEE-----CSSCCCCEEE-CSSCEEECCSS------SEEEEECTTTCSEE
T ss_pred EECccCcEEEEEE-----CCCCceEEec-CCCEEEEECCC------CeEEEEcCCCCeEE
Confidence 9998876543222 2224444443 45568886552 67999999987644
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.34 E-value=0.84 Score=44.27 Aligned_cols=191 Identities=12% Similarity=0.069 Sum_probs=97.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
++++++.|+.+ ..+.+||+.+.+-...-.. ....-..+.+ ++.+++.|+.+.
T Consensus 76 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~s~~~d~------ 129 (312)
T 4ery_A 76 DSNLLVSASDD-----KTLKIWDVSSGKCLKTLKG---------------HSNYVFCCNFNPQSNLIVSGSFDE------ 129 (312)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTCCEEEEEEC---------------CSSCEEEEEECSSSSEEEEEETTS------
T ss_pred CCCEEEEECCC-----CEEEEEECCCCcEEEEEcC---------------CCCCEEEEEEcCCCCEEEEEeCCC------
Confidence 45666777632 3588899887653322110 0111112222 566777777654
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccc
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~ 350 (572)
.+.+||+.+.+-...-. .......+..+ ++.+++.|+.+ ..+.+||+.+.+-...-.. ......
T Consensus 130 ~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~---~~~~~~ 195 (312)
T 4ery_A 130 SVRIWDVKTGKCLKTLP-----AHSDPVSAVHFNRDGSLIVSSSYD------GLCRIWDTASGQCLKTLID---DDNPPV 195 (312)
T ss_dssp CEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECC---SSCCCE
T ss_pred cEEEEECCCCEEEEEec-----CCCCcEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeEEec---cCCCce
Confidence 48899988765332211 11111222222 45677777764 3488999887764332211 111111
Q ss_pred eEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEE
Q 008260 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVA 430 (572)
Q Consensus 351 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v 430 (572)
...+...++..++.|+.+ ..+..||..+.+-...-. +.......-....... .+.+++
T Consensus 196 ~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------------~~~~l~ 253 (312)
T 4ery_A 196 SFVKFSPNGKYILAATLD-----NTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVT----------------GGKWIV 253 (312)
T ss_dssp EEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECS----------------SSCEEE
T ss_pred EEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeC----------------CCcEEE
Confidence 223333445566777654 468999998776433211 1111111111111112 226788
Q ss_pred EcCCCCCccCcEEEEeCCCCc
Q 008260 431 FGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 431 ~GG~~~~~~~dv~~yd~~~~~ 451 (572)
.|+.++. |.+||+.+..
T Consensus 254 sg~~dg~----i~vwd~~~~~ 270 (312)
T 4ery_A 254 SGSEDNL----VYIWNLQTKE 270 (312)
T ss_dssp ECCTTSC----EEEEETTTCC
T ss_pred EECCCCE----EEEEECCCch
Confidence 8887754 8889987653
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.34 E-value=0.39 Score=46.70 Aligned_cols=190 Identities=14% Similarity=0.059 Sum_probs=100.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~ 273 (572)
++++++.|+.+ ..+.+||+.+.+........ .....-.+++.. ++..++.|+.+. .
T Consensus 108 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~l~~~~~dg------~ 164 (337)
T 1gxr_A 108 DGCTLIVGGEA-----STLSIWDLAAPTPRIKAELT------------SSAPACYALAISPDSKVCFSCCSDG------N 164 (337)
T ss_dssp TSSEEEEEESS-----SEEEEEECCCC--EEEEEEE------------CSSSCEEEEEECTTSSEEEEEETTS------C
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCCcceeeecc------------cCCCceEEEEECCCCCEEEEEeCCC------c
Confidence 35566666532 36899999988765544332 011111122222 566777777653 4
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceE
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~ 352 (572)
+.+||+.+.+....-. . ....-.+++.. ++..++.|+.+ ..+.+||+.+.+-...... ...-.+
T Consensus 165 v~~~d~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~-----~~~v~~ 229 (337)
T 1gxr_A 165 IAVWDLHNQTLVRQFQ---G-HTDGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDF-----TSQIFS 229 (337)
T ss_dssp EEEEETTTTEEEEEEC---C-CSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEEC-----SSCEEE
T ss_pred EEEEeCCCCceeeeee---c-ccCceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeecC-----CCceEE
Confidence 8899998876444321 1 11112223332 55666677643 4589999887754333221 122234
Q ss_pred EEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEc
Q 008260 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFG 432 (572)
Q Consensus 353 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~G 432 (572)
++...++.++++|+.+ ..+..||+.+.+-..+.. ....-.++....+ +.+++.|
T Consensus 230 ~~~s~~~~~l~~~~~~-----~~i~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~----------------~~~l~~~ 283 (337)
T 1gxr_A 230 LGYCPTGEWLAVGMES-----SNVEVLHVNKPDKYQLHL-----HESCVLSLKFAYC----------------GKWFVST 283 (337)
T ss_dssp EEECTTSSEEEEEETT-----SCEEEEETTSSCEEEECC-----CSSCEEEEEECTT----------------SSEEEEE
T ss_pred EEECCCCCEEEEEcCC-----CcEEEEECCCCCeEEEcC-----CccceeEEEECCC----------------CCEEEEe
Confidence 4444555577777654 468899988776443321 1111122222222 2567777
Q ss_pred CCCCCccCcEEEEeCCCCcc
Q 008260 433 GYNGRYNNEVHVLKPSHKST 452 (572)
Q Consensus 433 G~~~~~~~dv~~yd~~~~~~ 452 (572)
+.++ .+.+||..+...
T Consensus 284 ~~dg----~i~~~~~~~~~~ 299 (337)
T 1gxr_A 284 GKDN----LLNAWRTPYGAS 299 (337)
T ss_dssp ETTS----EEEEEETTTCCE
T ss_pred cCCC----cEEEEECCCCeE
Confidence 7654 488899876543
No 45
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.14 E-value=1.1 Score=43.81 Aligned_cols=203 Identities=8% Similarity=-0.063 Sum_probs=103.4
Q ss_pred CCEEEEEccCCC-CcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eC-CEEEEEeccCCCCCcc
Q 008260 195 QDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WE-NKLLSIAGHTKDPSEI 271 (572)
Q Consensus 195 ~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~-~~iyv~GG~~~~~~~~ 271 (572)
++.||+...... ....+.++++|+.+.+-...-... .+ -+.++. -+ +.+|+.++.+
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------------~~-~~~~~~s~dg~~l~v~~~~~------ 110 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--------------LK-PFGATINNTTQTLWFGNTVN------ 110 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--------------SC-CCSEEEETTTTEEEEEETTT------
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--------------CC-cceEEECCCCCEEEEEecCC------
Confidence 357887653211 112457999999887654433321 11 122222 23 4677776543
Q ss_pred eeEEEEECCCCceEEeccCCCCCC-----CCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCC
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPV-----SRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP 344 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~-----~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~ 344 (572)
..+++||+.+.+-...-..+.... +..-+.+++. ++.+|+.+... ...++++|+.+.+-...-..
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~--- 182 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQN--- 182 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECC---
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecC---
Confidence 279999998876433221111111 1112334443 45777776321 24599999987765443321
Q ss_pred CCcccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccC
Q 008260 345 PSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYS 423 (572)
Q Consensus 345 p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~ 423 (572)
....-+..++. .++.+|+... + +.++++|+.+.+-......+.........+++...+
T Consensus 183 -~~~~~~~~~~s~dg~~l~~~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-------------- 241 (353)
T 3vgz_A 183 -TGKMSTGLALDSEGKRLYTTNA-D-----GELITIDTADNKILSRKKLLDDGKEHFFINISLDTA-------------- 241 (353)
T ss_dssp -CCTTCCCCEEETTTTEEEEECT-T-----SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT--------------
T ss_pred -CCCccceEEECCCCCEEEEEcC-C-----CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC--------------
Confidence 11112233444 3455666543 2 578899998876443221111111111223344433
Q ss_pred CCCEEEEEcCCCCCccCcEEEEeCCCCcc
Q 008260 424 GEDVIVAFGGYNGRYNNEVHVLKPSHKST 452 (572)
Q Consensus 424 g~~~l~v~GG~~~~~~~dv~~yd~~~~~~ 452 (572)
.+.||+.... .+.+++||+.+...
T Consensus 242 -g~~l~~~~~~----~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 242 -RQRAFITDSK----AAEVLVVDTRNGNI 265 (353)
T ss_dssp -TTEEEEEESS----SSEEEEEETTTCCE
T ss_pred -CCEEEEEeCC----CCEEEEEECCCCcE
Confidence 3367665432 25689999877643
No 46
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.12 E-value=0.44 Score=49.10 Aligned_cols=187 Identities=12% Similarity=0.183 Sum_probs=101.3
Q ss_pred EEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcc
Q 008260 192 AVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEI 271 (572)
Q Consensus 192 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~ 271 (572)
...++..++.|+.+ ..+.+||..+.+-...-. .......++..++.+++.|+.++
T Consensus 139 ~~~d~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~---------------~h~~~v~~l~~~~~~l~sg~~dg----- 193 (435)
T 1p22_A 139 LQYDDQKIVSGLRD-----NTIKIWDKNTLECKRILT---------------GHTGSVLCLQYDERVIITGSSDS----- 193 (435)
T ss_dssp EECCSSEEEEEESS-----SCEEEEESSSCCEEEEEC---------------CCSSCEEEEECCSSEEEEEETTS-----
T ss_pred EEECCCEEEEEeCC-----CeEEEEeCCCCeEEEEEc---------------CCCCcEEEEEECCCEEEEEcCCC-----
Confidence 33467777777732 358899988765433211 11122334445788888888765
Q ss_pred eeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEe-eCCCCCCCcccc
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEI-DAVGVPPSPRSD 350 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v-~~~g~~p~~R~~ 350 (572)
.|.+||..+.+-...-. .......+..+.+.+++.|+.+ ..+.+||+.+..-... ... ......
T Consensus 194 -~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~---~~~~~~ 258 (435)
T 1p22_A 194 -TVRVWDVNTGEMLNTLI-----HHCEAVLHLRFNNGMMVTCSKD------RSIAVWDMASPTDITLRRVL---VGHRAA 258 (435)
T ss_dssp -CEEEEESSSCCEEEEEC-----CCCSCEEEEECCTTEEEEEETT------SCEEEEECSSSSCCEEEEEE---CCCSSC
T ss_pred -eEEEEECCCCcEEEEEc-----CCCCcEEEEEEcCCEEEEeeCC------CcEEEEeCCCCCCceeeeEe---cCCCCc
Confidence 48899988776433321 1111223333455567777754 3488889876542211 111 111122
Q ss_pred eEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEE
Q 008260 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVA 430 (572)
Q Consensus 351 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v 430 (572)
..++...++ .++.|+.+ ..+.+||+.+.+-...-. .......++..++ .+++
T Consensus 259 v~~~~~~~~-~l~s~~~d-----g~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~-----------------~~l~ 310 (435)
T 1p22_A 259 VNVVDFDDK-YIVSASGD-----RTIKVWNTSTCEFVRTLN-----GHKRGIACLQYRD-----------------RLVV 310 (435)
T ss_dssp EEEEEEETT-EEEEEETT-----SEEEEEETTTCCEEEEEE-----CCSSCEEEEEEET-----------------TEEE
T ss_pred EEEEEeCCC-EEEEEeCC-----CeEEEEECCcCcEEEEEc-----CCCCcEEEEEeCC-----------------CEEE
Confidence 233334555 66666654 468899988765433211 1111122233332 4777
Q ss_pred EcCCCCCccCcEEEEeCCCC
Q 008260 431 FGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 431 ~GG~~~~~~~dv~~yd~~~~ 450 (572)
.|+.++. |.+||+.+.
T Consensus 311 ~g~~dg~----i~iwd~~~~ 326 (435)
T 1p22_A 311 SGSSDNT----IRLWDIECG 326 (435)
T ss_dssp EEETTSC----EEEEETTTC
T ss_pred EEeCCCe----EEEEECCCC
Confidence 7886654 888998765
No 47
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.08 E-value=1.2 Score=43.60 Aligned_cols=202 Identities=10% Similarity=-0.008 Sum_probs=103.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
++.+|+.++. .+.++++|+.+.+-...-..... ..+....+..-+.++.. ++.+|+.+... ..
T Consensus 100 g~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~ 164 (353)
T 3vgz_A 100 TQTLWFGNTV-----NSAVTAIDAKTGEVKGRLVLDDR-----KRTEEVRPLQPRELVADDATNTVYISGIGK-----ES 164 (353)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTCCEEEEEESCCC-----CCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SC
T ss_pred CCEEEEEecC-----CCEEEEEeCCCCeeEEEEecCCC-----ccccccCCCCCceEEECCCCCEEEEEecCC-----Cc
Confidence 3568877652 23799999988765333222100 00000011112333332 45677776332 23
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccc
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~ 350 (572)
.+++||+.+.+-...-. . .....+.++.. ++.||+... .+.+.+||+.+.+-......+........
T Consensus 165 ~i~~~d~~~~~~~~~~~---~-~~~~~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 165 VIWVVDGGNIKLKTAIQ---N-TGKMSTGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEEEETTTTEEEEEEC---C-CCTTCCCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred eEEEEcCCCCceEEEec---C-CCCccceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 69999998776443321 0 11112233333 456776543 24688999988764433222111111222
Q ss_pred eEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEE
Q 008260 351 HAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIV 429 (572)
Q Consensus 351 ~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~ 429 (572)
.++++.. ++.+|+....+ +.+++||+.+.+....-. .+.+ ...+...+ .+.+|
T Consensus 234 ~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~---~~~~---~~~~~s~d---------------g~~l~ 287 (353)
T 3vgz_A 234 INISLDTARQRAFITDSKA-----AEVLVVDTRNGNILAKVA---APES---LAVLFNPA---------------RNEAY 287 (353)
T ss_dssp EEEEEETTTTEEEEEESSS-----SEEEEEETTTCCEEEEEE---CSSC---CCEEEETT---------------TTEEE
T ss_pred ceEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEE---cCCC---ceEEECCC---------------CCEEE
Confidence 2344443 45677765422 579999998877654322 1222 23344433 33677
Q ss_pred EEcCCCCCccCcEEEEeCCCCcc
Q 008260 430 AFGGYNGRYNNEVHVLKPSHKST 452 (572)
Q Consensus 430 v~GG~~~~~~~dv~~yd~~~~~~ 452 (572)
+.+..+ +.+.+||+.+...
T Consensus 288 v~~~~~----~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 288 VTHRQA----GKVSVIDAKSYKV 306 (353)
T ss_dssp EEETTT----TEEEEEETTTTEE
T ss_pred EEECCC----CeEEEEECCCCeE
Confidence 765433 4689999877643
No 48
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.94 E-value=0.74 Score=46.91 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=82.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
++++|+.|+. -..+.+||+.+.+....-.. ....-.+++.. +..+|+.++.+.
T Consensus 180 ~~~~~~s~~~-----d~~v~~~d~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~~~~~~------ 234 (433)
T 3bws_A 180 HNELWVSQMQ-----ANAVHVFDLKTLAYKATVDL--------------TGKWSKILLYDPIRDLVYCSNWISE------ 234 (433)
T ss_dssp GTEEEEEEGG-----GTEEEEEETTTCCEEEEEEC--------------SSSSEEEEEEETTTTEEEEEETTTT------
T ss_pred CCEEEEEECC-----CCEEEEEECCCceEEEEEcC--------------CCCCeeEEEEcCCCCEEEEEecCCC------
Confidence 5788888762 24689999987654332211 11111222222 456777665432
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCC--CCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRS--LLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~--~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
.+.+||+.+.+....-. ....-.+++.. +++.+++++...... .-..+.+||+.+.+-...... +..
T Consensus 235 ~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-----~~~ 304 (433)
T 3bws_A 235 DISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-----PGN 304 (433)
T ss_dssp EEEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-----EEC
T ss_pred cEEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-----CCC
Confidence 69999998876544421 11122333333 344444444432211 124689999987764433211 111
Q ss_pred ceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 350 DHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 350 ~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
..+.+... ++.+|+.++.+ +.+.+||+.+.+-..
T Consensus 305 ~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~~ 339 (433)
T 3bws_A 305 KRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQK 339 (433)
T ss_dssp EEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred cceEEECCCCCEEEEEecCC-----CEEEEEECCCCcEEE
Confidence 12233333 34688887654 578999998776443
No 49
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.94 E-value=0.35 Score=49.90 Aligned_cols=197 Identities=12% Similarity=0.091 Sum_probs=103.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCE-EEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENK-LLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~-iyv~GG~~~~~~~~~ 272 (572)
+++.+++++...+ ...++++|+.+.+...+... +..-.+.+.. +++ |++.+..+. ..
T Consensus 189 dg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~---------------~~~~~~~~~spdg~~la~~~~~~g----~~ 247 (415)
T 2hqs_A 189 DGSKLAYVTFESG--RSALVIQTLANGAVRQVASF---------------PRHNGAPAFSPDGSKLAFALSKTG----SL 247 (415)
T ss_dssp TSSEEEEEECTTS--SCEEEEEETTTCCEEEEECC---------------SSCEEEEEECTTSSEEEEEECTTS----SC
T ss_pred CCCEEEEEEecCC--CcEEEEEECCCCcEEEeecC---------------CCcccCEEEcCCCCEEEEEEecCC----Cc
Confidence 4555555554332 25799999999887665432 1111222222 444 554554322 24
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
.++++|+.+.+...+... + ......+.. +++.+++++.... ...++++|+.+.+-..+... .....
T Consensus 248 ~i~~~d~~~~~~~~l~~~---~--~~~~~~~~spdg~~l~~~s~~~g---~~~i~~~d~~~~~~~~l~~~-----~~~~~ 314 (415)
T 2hqs_A 248 NLYVMDLASGQIRQVTDG---R--SNNTEPTWFPDSQNLAFTSDQAG---RPQVYKVNINGGAPQRITWE-----GSQNQ 314 (415)
T ss_dssp EEEEEETTTCCEEECCCC---S--SCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCCEECCCS-----SSEEE
T ss_pred eEEEEECCCCCEEeCcCC---C--CcccceEECCCCCEEEEEECCCC---CcEEEEEECCCCCEEEEecC-----CCccc
Confidence 799999998887666421 1 111222222 4444444442211 24699999988775554321 12223
Q ss_pred EEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEE
Q 008260 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAF 431 (572)
Q Consensus 352 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~ 431 (572)
+.+...++..+++++...+ ...++++|+.+.+...+... . .-.+.+...+ ++.+++
T Consensus 315 ~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~~-----~-~~~~~~~spd----------------g~~l~~ 370 (415)
T 2hqs_A 315 DADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLSST-----F-LDETPSLAPN----------------GTMVIY 370 (415)
T ss_dssp EEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECCCS-----S-SCEEEEECTT----------------SSEEEE
T ss_pred CeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEecCC-----C-CcCCeEEcCC----------------CCEEEE
Confidence 3444445445555553322 25799999999888765321 1 2222333332 245566
Q ss_pred cCCCCCccCcEEEEeCCCC
Q 008260 432 GGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 432 GG~~~~~~~dv~~yd~~~~ 450 (572)
++.++. ...++++|+...
T Consensus 371 ~s~~~~-~~~l~~~d~~g~ 388 (415)
T 2hqs_A 371 SSSQGM-GSVLNLVSTDGR 388 (415)
T ss_dssp EEEETT-EEEEEEEETTSC
T ss_pred EEcCCC-ccEEEEEECCCC
Confidence 654332 236889997654
No 50
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.93 E-value=1.1 Score=44.33 Aligned_cols=151 Identities=13% Similarity=0.167 Sum_probs=82.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~ 273 (572)
+++++++|+. -..+.+||+.+.+|..+.... .....-.+++.. ++.+++.|+.+. .
T Consensus 19 ~~~~l~~~~~-----d~~v~i~~~~~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~l~~~~~dg------~ 75 (372)
T 1k8k_C 19 DRTQIAICPN-----NHEVHIYEKSGNKWVQVHELK------------EHNGQVTGVDWAPDSNRIVTCGTDR------N 75 (372)
T ss_dssp TSSEEEEECS-----SSEEEEEEEETTEEEEEEEEE------------CCSSCEEEEEEETTTTEEEEEETTS------C
T ss_pred CCCEEEEEeC-----CCEEEEEeCCCCcEEeeeeec------------CCCCcccEEEEeCCCCEEEEEcCCC------e
Confidence 4566777763 246899999998877666553 111111222222 567777777653 4
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCc-EEEeeCCCCCCCcccce
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMT-WDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~v~~~g~~p~~R~~~ 351 (572)
+.+||..+.++...... ......-.++... ++.+++.|+.+ ..+.+||+.+.. |....... .+....-.
T Consensus 76 i~vwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~ 146 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLVI--LRINRAARCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHIK-KPIRSTVL 146 (372)
T ss_dssp EEEEEEETTEEEEEEEC--CCCSSCEEEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEEC-TTCCSCEE
T ss_pred EEEEECCCCeeeeeEEe--ecCCCceeEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeeee-cccCCCee
Confidence 88899888887655421 1111222233332 45677777653 336677666543 33332210 11222233
Q ss_pred EEEEEcCCEEEEEeCCCCCcCcCcEEEEECC
Q 008260 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQ 382 (572)
Q Consensus 352 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~ 382 (572)
+++...++.+++.|+.+ ..+..||+.
T Consensus 147 ~~~~~~~~~~l~~~~~d-----g~i~~~d~~ 172 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGSCD-----FKCRIFSAY 172 (372)
T ss_dssp EEEECTTSSEEEEEETT-----SCEEEEECC
T ss_pred EEEEcCCCCEEEEEcCC-----CCEEEEEcc
Confidence 44444455577788754 467888854
No 51
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.55 Score=52.59 Aligned_cols=107 Identities=12% Similarity=0.200 Sum_probs=63.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--C--CEEEEEeccCCCCCc
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E--NKLLSIAGHTKDPSE 270 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~--~~iyv~GG~~~~~~~ 270 (572)
++.+++.||.+ ..+.+||+.+.++..+.... ........+.+ + +.+++.|+.++
T Consensus 20 dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~-------------~h~~~V~~l~~s~~~~~~~l~s~s~Dg---- 77 (753)
T 3jro_A 20 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLT-------------GHEGPVWRVDWAHPKFGTILASCSYDG---- 77 (753)
T ss_dssp SSCCEEEEETT-----TEEEEEEEETTEEEEEEEEC-------------CCSSCEEEEEECCTTSCSEEEEEETTS----
T ss_pred CCCeEEEEECC-----CcEEEEecCCCCCccceecc-------------CCcCceEEEEecCCCCCCEEEEEeCCC----
Confidence 35566677632 35888898887887766543 11222222333 3 67788888764
Q ss_pred ceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-C--CEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-G--TSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 271 ~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~--~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
.|.+||+.+.+|..+.... .....-.++... + +.+++.|+.+ ..+.+||+.+.
T Consensus 78 --~I~vwd~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~ 133 (753)
T 3jro_A 78 --KVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKEN 133 (753)
T ss_dssp --CEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSS
T ss_pred --eEEEEECCCCccccccccc--CCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecC
Confidence 4889999998887765321 111222223332 2 6677888754 34788887765
No 52
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.75 E-value=0.91 Score=46.05 Aligned_cols=136 Identities=12% Similarity=0.155 Sum_probs=75.9
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcceeEEEEECCCCceEEec
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK 288 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 288 (572)
..+.+||..+.+........ . ......+.+ ++.+++.|+.++ .+.+||+.+.+....-
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~-------------~-~~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~ 172 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD-------------E-STYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKLRTM 172 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC-------------T-TCCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEE
T ss_pred CeEEEeeCCCCcEeEeeecC-------------C-CCCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEEEEe
Confidence 35889999888776654421 1 111222222 567777777654 5889998876644332
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcE--EEeeCCCCCCCcccceEEEEEcCCEEEEEeC
Q 008260 289 TYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTW--DEIDAVGVPPSPRSDHAAAVHAERYLLIFGG 366 (572)
Q Consensus 289 ~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W--~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG 366 (572)
. .......+...++.+++.|+.+ ..+.+||+.+..- ..+.. ....-.+++...++.+++.|+
T Consensus 173 ~-----~~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 173 A-----GHQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQG-----HSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp C-----CCSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC-----CSSCEEEEEECTTSSEEEEEE
T ss_pred c-----CCCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcC-----CCCCeeEEEEcCCCCEEEEEe
Confidence 1 1111222333356677777754 4588899874332 22211 112223344444555788887
Q ss_pred CCCCcCcCcEEEEECCCCcEE
Q 008260 367 GSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 367 ~~~~~~~~~v~~yd~~t~~W~ 387 (572)
.+ ..+.+||+.+.+-.
T Consensus 237 ~d-----~~v~iwd~~~~~~~ 252 (401)
T 4aez_A 237 ND-----NVVQIWDARSSIPK 252 (401)
T ss_dssp TT-----SCEEEEETTCSSEE
T ss_pred CC-----CeEEEccCCCCCcc
Confidence 65 46899999876543
No 53
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.74 E-value=1.1 Score=46.14 Aligned_cols=202 Identities=8% Similarity=0.052 Sum_probs=104.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~ 273 (572)
+.+|..++....+.....++++|+....-..+.... .. -.+.+. -+++.+++++.+.. ...
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~--------------~~-v~~~~~Spdg~~la~~s~~~~---~~~ 204 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP--------------QP-LMSPAWSPDGSKLAYVTFESG---RSA 204 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES--------------SC-EEEEEECTTSSEEEEEECTTS---SCE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCC--------------Cc-ceeeEEcCCCCEEEEEEecCC---CcE
Confidence 455544443222222357999998876555443321 11 111222 25666666665432 357
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
++++|+.+.+...+.. .+ ....+.+.. ++ .|++.+..++ ...++++|+.+.+...+... .....
T Consensus 205 i~~~d~~tg~~~~l~~---~~--~~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~-----~~~~~ 270 (415)
T 2hqs_A 205 LVIQTLANGAVRQVAS---FP--RHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG-----RSNNT 270 (415)
T ss_dssp EEEEETTTCCEEEEEC---CS--SCEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCC-----SSCEE
T ss_pred EEEEECCCCcEEEeec---CC--CcccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCC-----CCccc
Confidence 9999999988776642 11 122233333 33 5665554432 24699999998887666432 11222
Q ss_pred EEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEE
Q 008260 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAF 431 (572)
Q Consensus 352 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~ 431 (572)
+.+...++..+++++...+ ...+|.+|+.+.+-..+.. ......+.+...+ . +.+++
T Consensus 271 ~~~~spdg~~l~~~s~~~g--~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spd---------------G-~~l~~ 327 (415)
T 2hqs_A 271 EPTWFPDSQNLAFTSDQAG--RPQVYKVNINGGAPQRITW-----EGSQNQDADVSSD---------------G-KFMVM 327 (415)
T ss_dssp EEEECTTSSEEEEEECTTS--SCEEEEEETTSSCCEECCC-----SSSEEEEEEECTT---------------S-SEEEE
T ss_pred ceEECCCCCEEEEEECCCC--CcEEEEEECCCCCEEEEec-----CCCcccCeEECCC---------------C-CEEEE
Confidence 3333345444555442211 2469999998876555431 1122122222222 1 44455
Q ss_pred cCCCCCccCcEEEEeCCCCcc
Q 008260 432 GGYNGRYNNEVHVLKPSHKST 452 (572)
Q Consensus 432 GG~~~~~~~dv~~yd~~~~~~ 452 (572)
++.++. ...++++|+.+...
T Consensus 328 ~~~~~g-~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 328 VSSNGG-QQHIAKQDLATGGV 347 (415)
T ss_dssp EEECSS-CEEEEEEETTTCCE
T ss_pred EECcCC-ceEEEEEECCCCCE
Confidence 543321 34689999887644
No 54
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.67 E-value=2 Score=42.96 Aligned_cols=161 Identities=12% Similarity=0.103 Sum_probs=88.2
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--cEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCC
Q 008260 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (572)
Q Consensus 189 ~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 266 (572)
.+.++.++.||+... ...+++||..+. .|+.-..... ............+.+..++.||+....
T Consensus 47 ~~p~v~~~~v~~~~~------~g~v~a~d~~tG~~~W~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~v~~~~-- 112 (376)
T 3q7m_A 47 LHPALADNVVYAADR------AGLVKALNADDGKEIWSVSLAEKD------GWFSKEPALLSGGVTVSGGHVYIGSEK-- 112 (376)
T ss_dssp CCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC---------CCSCCCCCEEEEEEEETTEEEEEETT--
T ss_pred eccEEECCEEEEEcC------CCeEEEEEccCCceeeeecCcccc------ccccccCcccccCceEeCCEEEEEcCC--
Confidence 356677999998864 137999999765 4765432110 000000122333445568888885432
Q ss_pred CCCcceeEEEEECCCCc--eEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCc--EEEeeCCC
Q 008260 267 DPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEIDAVG 342 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~--W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~v~~~g 342 (572)
..+..||..+.+ |+.-... . .....++.++.+|+... ...++.||+.+.+ |+.-....
T Consensus 113 -----g~l~a~d~~tG~~~W~~~~~~-----~-~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~ 174 (376)
T 3q7m_A 113 -----AQVYALNTSDGTVAWQTKVAG-----E-ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMP 174 (376)
T ss_dssp -----SEEEEEETTTCCEEEEEECSS-----C-CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-
T ss_pred -----CEEEEEECCCCCEEEEEeCCC-----c-eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCC
Confidence 369999988654 7654321 1 12223455788777432 2469999987764 87654321
Q ss_pred CCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC--cEEee
Q 008260 343 VPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSRP 389 (572)
Q Consensus 343 ~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~v 389 (572)
....+...+.++. ++.+|+ |..+ ..++.||+.+. .|+.-
T Consensus 175 -~~~~~~~~~~~~~-~~~v~~-g~~~-----g~l~~~d~~tG~~~w~~~ 215 (376)
T 3q7m_A 175 -SLSLRGESAPTTA-FGAAVV-GGDN-----GRVSAVLMEQGQMIWQQR 215 (376)
T ss_dssp -----CCCCCCEEE-TTEEEE-CCTT-----TEEEEEETTTCCEEEEEE
T ss_pred -ceeecCCCCcEEE-CCEEEE-EcCC-----CEEEEEECCCCcEEEEEe
Confidence 1111112233333 554555 4322 46899998765 47654
No 55
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.29 Score=48.59 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=81.3
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--C--CEEEEEeccCCCCCcc
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E--NKLLSIAGHTKDPSEI 271 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~--~~iyv~GG~~~~~~~~ 271 (572)
+.+++.|+.+ ..+.+||+.+.+|..+.... ........+.+ + +.+++.|+.+.
T Consensus 69 ~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~l~~~~~d~----- 125 (379)
T 3jrp_A 69 GTILASCSYD-----GKVLIWKEENGRWSQIAVHA-------------VHSASVNSVQWAPHEYGPLLLVASSDG----- 125 (379)
T ss_dssp CSEEEEEETT-----SCEEEEEEETTEEEEEEEEC-------------CCSSCEEEEEECCGGGCSEEEEEETTS-----
T ss_pred CCEEEEeccC-----CEEEEEEcCCCceeEeeeec-------------CCCcceEEEEeCCCCCCCEEEEecCCC-----
Confidence 5666777632 35889999999887776553 11122222233 3 56777777654
Q ss_pred eeEEEEECCCCce-EEeccCCCCCCCCcceEEEEE--------------CCEEEEEecCCCCCCCCCceEEEECCCC--c
Q 008260 272 IQVKVFDLQTCSW-STLKTYGKPPVSRGGQSVTLV--------------GTSLVIFGGEDAKRSLLNDLHILDLETM--T 334 (572)
Q Consensus 272 ~~v~~yd~~~~~W-~~~~~~g~~p~~R~~~~~~~~--------------~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~ 334 (572)
.+.+||+.+..- ...... .....-.+++.. ++.+++.|+.++ .+.+||+.+. .
T Consensus 126 -~i~v~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 126 -KVSVVEFKENGTTSPIIID---AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQT 195 (379)
T ss_dssp -EEEEEECCTTSCCCEEEEE---CCTTCEEEEEECCCC----------CTTCEEEEEETTS------CEEEEEEETTTTE
T ss_pred -cEEEEecCCCCceeeEEec---CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC------eEEEEEecCCCcc
Confidence 588888877632 111110 011111222222 367778887643 4778887544 3
Q ss_pred EEEeeCCCCCCCcccceEEEEEcC---CEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 335 WDEIDAVGVPPSPRSDHAAAVHAE---RYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 335 W~~v~~~g~~p~~R~~~~~~~~~~---~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
|..+.... .....-.+++...+ +.+++.|+.+ ..+.+||+.+.
T Consensus 196 ~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~d-----g~i~iwd~~~~ 241 (379)
T 3jrp_A 196 YVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQD-----RTCIIWTQDNE 241 (379)
T ss_dssp EEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETT-----SCEEEEEESST
T ss_pred eeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCC-----CEEEEEeCCCC
Confidence 55444321 11122233444445 5688888765 35778887765
No 56
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=95.63 E-value=1.7 Score=41.92 Aligned_cols=189 Identities=12% Similarity=0.100 Sum_probs=97.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
++++++.|+.+ ..+.++|..+.+....-.. .......+.+ ++.+++.|+.+.
T Consensus 34 ~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~---------------h~~~v~~~~~~~~~~~l~s~~~d~------ 87 (312)
T 4ery_A 34 NGEWLASSSAD-----KLIKIWGAYDGKFEKTISG---------------HKLGISDVAWSSDSNLLVSASDDK------ 87 (312)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTCCEEEEECC---------------CSSCEEEEEECTTSSEEEEEETTS------
T ss_pred CCCEEEEeeCC-----CeEEEEeCCCcccchhhcc---------------CCCceEEEEEcCCCCEEEEECCCC------
Confidence 35566666632 2477888877766543211 1111222222 567777777653
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
.+.+||..+.+-...-. .. ...-.++... ++.+++.|+.++ .+.+||+.+.+-...-.. ....-.
T Consensus 88 ~i~vwd~~~~~~~~~~~---~~-~~~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~----~~~~v~ 153 (312)
T 4ery_A 88 TLKIWDVSSGKCLKTLK---GH-SNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKTLPA----HSDPVS 153 (312)
T ss_dssp EEEEEETTTCCEEEEEE---CC-SSCEEEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEEECC----CSSCEE
T ss_pred EEEEEECCCCcEEEEEc---CC-CCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEEecC----CCCcEE
Confidence 58899988765332211 00 1111122222 456777777643 488999887654322211 111122
Q ss_pred EEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEE
Q 008260 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAF 431 (572)
Q Consensus 352 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~ 431 (572)
+.+...++.+++.|+.+ ..+..||+.+.+....-.. ........+.+.. .+..++.
T Consensus 154 ~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~---------------~~~~l~~ 209 (312)
T 4ery_A 154 AVHFNRDGSLIVSSSYD-----GLCRIWDTASGQCLKTLID----DDNPPVSFVKFSP---------------NGKYILA 209 (312)
T ss_dssp EEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEECC----SSCCCEEEEEECT---------------TSSEEEE
T ss_pred EEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeeEEec----cCCCceEEEEECC---------------CCCEEEE
Confidence 33333455577888764 4688999987765432110 0111112222222 2256677
Q ss_pred cCCCCCccCcEEEEeCCCCc
Q 008260 432 GGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 432 GG~~~~~~~dv~~yd~~~~~ 451 (572)
|+.++ .+.+||..+..
T Consensus 210 ~~~d~----~i~iwd~~~~~ 225 (312)
T 4ery_A 210 ATLDN----TLKLWDYSKGK 225 (312)
T ss_dssp EETTT----EEEEEETTTTE
T ss_pred EcCCC----eEEEEECCCCc
Confidence 77664 48889987653
No 57
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.49 E-value=1.4 Score=45.24 Aligned_cols=187 Identities=13% Similarity=0.208 Sum_probs=98.0
Q ss_pred EECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcce
Q 008260 193 VVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 193 ~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~ 272 (572)
..++.+++.|+.+ ..+.++|+.+.+-... .. ........+.+++..++.|+.++
T Consensus 180 ~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~--~~-------------~h~~~v~~l~~~~~~l~s~s~dg------ 233 (435)
T 1p22_A 180 QYDERVIITGSSD-----STVRVWDVNTGEMLNT--LI-------------HHCEAVLHLRFNNGMMVTCSKDR------ 233 (435)
T ss_dssp ECCSSEEEEEETT-----SCEEEEESSSCCEEEE--EC-------------CCCSCEEEEECCTTEEEEEETTS------
T ss_pred EECCCEEEEEcCC-----CeEEEEECCCCcEEEE--Ec-------------CCCCcEEEEEEcCCEEEEeeCCC------
Confidence 3367777777733 3588999888754322 11 11122233444566777777654
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceE
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~ 352 (572)
.+.+||..+.+-..... ..........+...++..++.|+.+ ..+.+||+.+.+-...-.. ......
T Consensus 234 ~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~-----~~~~v~ 300 (435)
T 1p22_A 234 SIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWNTSTCEFVRTLNG-----HKRGIA 300 (435)
T ss_dssp CEEEEECSSSSCCEEEE--EECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTTCCEEEEEEC-----CSSCEE
T ss_pred cEEEEeCCCCCCceeee--EecCCCCcEEEEEeCCCEEEEEeCC------CeEEEEECCcCcEEEEEcC-----CCCcEE
Confidence 48889987654321100 0011111222333355566666653 3588999887654322111 111223
Q ss_pred EEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEc
Q 008260 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFG 432 (572)
Q Consensus 353 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~G 432 (572)
++...++ +++.|+.+ ..+.+||+.+.+-...- ........++.+++ ..++.|
T Consensus 301 ~~~~~~~-~l~~g~~d-----g~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~-----------------~~l~sg 352 (435)
T 1p22_A 301 CLQYRDR-LVVSGSSD-----NTIRLWDIECGACLRVL-----EGHEELVRCIRFDN-----------------KRIVSG 352 (435)
T ss_dssp EEEEETT-EEEEEETT-----SCEEEEETTTCCEEEEE-----CCCSSCEEEEECCS-----------------SEEEEE
T ss_pred EEEeCCC-EEEEEeCC-----CeEEEEECCCCCEEEEE-----eCCcCcEEEEEecC-----------------CEEEEE
Confidence 3344455 77777754 46899999876543321 11111122233333 577788
Q ss_pred CCCCCccCcEEEEeCCCC
Q 008260 433 GYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 433 G~~~~~~~dv~~yd~~~~ 450 (572)
+.++. |.+||+.+.
T Consensus 353 ~~dg~----i~vwd~~~~ 366 (435)
T 1p22_A 353 AYDGK----IKVWDLVAA 366 (435)
T ss_dssp ETTSC----EEEEEHHHH
T ss_pred eCCCc----EEEEECCCC
Confidence 87754 788886443
No 58
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.48 E-value=0.92 Score=43.91 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=79.5
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++..++.|+.+. .+.+||+.+.+........ .....-.+++.. ++++++.|+.+ ..+.+||+.+.
T Consensus 108 ~~~~l~~~~~d~------~i~~~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~ 173 (337)
T 1gxr_A 108 DGCTLIVGGEAS------TLSIWDLAAPTPRIKAELT--SSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQ 173 (337)
T ss_dssp TSSEEEEEESSS------EEEEEECCCC--EEEEEEE--CSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTT
T ss_pred CCCEEEEEcCCC------cEEEEECCCCCcceeeecc--cCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCC
Confidence 566677776543 6889999887754443210 011111223333 45666777653 34889999887
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCcccc
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFL 413 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~i 413 (572)
+....-.. ....-.+.+...++..++.|+.+ ..+..||+.+.+-..... ....-.+++...+
T Consensus 174 ~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~-----~~~~v~~~~~s~~---- 235 (337)
T 1gxr_A 174 TLVRQFQG----HTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQHD-----FTSQIFSLGYCPT---- 235 (337)
T ss_dssp EEEEEECC----CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEE-----CSSCEEEEEECTT----
T ss_pred ceeeeeec----ccCceEEEEECCCCCEEEEEecC-----CcEEEEECCCCceEeeec-----CCCceEEEEECCC----
Confidence 65433221 11222334444455577777654 468999998776443311 1111122222222
Q ss_pred ceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCc
Q 008260 414 GLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 414 G~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
+.++++|+.++ .+.+||..+..
T Consensus 236 ------------~~~l~~~~~~~----~i~~~~~~~~~ 257 (337)
T 1gxr_A 236 ------------GEWLAVGMESS----NVEVLHVNKPD 257 (337)
T ss_dssp ------------SSEEEEEETTS----CEEEEETTSSC
T ss_pred ------------CCEEEEEcCCC----cEEEEECCCCC
Confidence 25777777654 48889987653
No 59
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.48 E-value=0.95 Score=44.95 Aligned_cols=157 Identities=10% Similarity=0.151 Sum_probs=84.3
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
++++++.||.+ ..+.++|..+..|....... .........+.+ ++.+++.|+.+.
T Consensus 27 ~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~------------~~h~~~v~~~~~sp~g~~l~s~s~D~------ 83 (345)
T 3fm0_A 27 AGTLLASCGGD-----RRIRIWGTEGDSWICKSVLS------------EGHQRTVRKVAWSPCGNYLASASFDA------ 83 (345)
T ss_dssp TSSCEEEEETT-----SCEEEEEEETTEEEEEEEEC------------SSCSSCEEEEEECTTSSEEEEEETTS------
T ss_pred CCCEEEEEcCC-----CeEEEEEcCCCcceeeeeec------------cccCCcEEEEEECCCCCEEEEEECCC------
Confidence 46677777733 35788888888876443321 011111222222 567778888764
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC-cEEEeeCCCCCCCcccc
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM-TWDEIDAVGVPPSPRSD 350 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~v~~~g~~p~~R~~ 350 (572)
.+.++|..+..+..+.... .....-.+++.. ++++++.|+.++ .+.++|+.+. .+..+.... .....-
T Consensus 84 ~v~iw~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~--~h~~~v 153 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLE--GHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVLN--SHTQDV 153 (345)
T ss_dssp CEEEEEECCC-EEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEEC--CCCSCE
T ss_pred cEEEEEccCCCeEEEEEcc--CCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEec--CcCCCe
Confidence 4777887777665543211 011111223332 566777777643 4788887654 333333220 111112
Q ss_pred eEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 351 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
.+++...++.+++.|+.+ ..+.+||..+..|..+
T Consensus 154 ~~~~~~p~~~~l~s~s~d-----~~i~~w~~~~~~~~~~ 187 (345)
T 3fm0_A 154 KHVVWHPSQELLASASYD-----DTVKLYREEEDDWVCC 187 (345)
T ss_dssp EEEEECSSSSCEEEEETT-----SCEEEEEEETTEEEEE
T ss_pred EEEEECCCCCEEEEEeCC-----CcEEEEEecCCCEEEE
Confidence 233333455577888765 4578888888887654
No 60
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=95.43 E-value=1.9 Score=41.02 Aligned_cols=151 Identities=6% Similarity=-0.057 Sum_probs=82.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~ 273 (572)
++.||+.... ...+++||+. .+...+.... ....-+.++.. ++.||+..... ..
T Consensus 67 ~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~~~~-------------~~~~~~~i~~~~~g~l~v~~~~~------~~ 121 (299)
T 2z2n_A 67 DGEVWFTENA-----ANKIGRITKK-GIIKEYTLPN-------------PDSAPYGITEGPNGDIWFTEMNG------NR 121 (299)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEECSS-------------TTCCEEEEEECTTSCEEEEETTT------TE
T ss_pred CCCEEEeCCC-----CCeEEEECCC-CcEEEEeCCC-------------cCCCceeeEECCCCCEEEEecCC------ce
Confidence 4678887431 1358899986 4454443110 11122334433 57888875432 36
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceE
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~ 352 (572)
+.+||+ +.+....... .....-+.++.. +++||+.... .+.+++||+ +.+...+... .....-.+
T Consensus 122 i~~~d~-~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~---~~~~~~~~ 187 (299)
T 2z2n_A 122 IGRITD-DGKIREYELP---NKGSYPSFITLGSDNALWFTENQ------NNAIGRITE-SGDITEFKIP---TPASGPVG 187 (299)
T ss_dssp EEEECT-TCCEEEEECS---STTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECS---STTCCEEE
T ss_pred EEEECC-CCCEEEecCC---CCCCCCceEEEcCCCCEEEEeCC------CCEEEEEcC-CCcEEEeeCC---CCCCccee
Confidence 889998 6666555321 111222344444 5688876421 346999998 7777665321 11122234
Q ss_pred EEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 353 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
.++..++.||+..... +.+.+||+ +.+...+.
T Consensus 188 i~~~~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 188 ITKGNDDALWFVEIIG-----NKIGRITT-SGEITEFK 219 (299)
T ss_dssp EEECTTSSEEEEETTT-----TEEEEECT-TCCEEEEE
T ss_pred EEECCCCCEEEEccCC-----ceEEEECC-CCcEEEEE
Confidence 4444455688865322 56999999 77776653
No 61
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=95.35 E-value=2.1 Score=41.24 Aligned_cols=156 Identities=17% Similarity=0.009 Sum_probs=94.2
Q ss_pred eeEEEeC-CEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEE
Q 008260 249 HSLIPWE-NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHI 327 (572)
Q Consensus 249 hs~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 327 (572)
|.+...+ +.||+..|... .+.+.++|+.+.+-..--. ++....+.+.+..+++||+..-. .+.+++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~---l~~~~fgeGi~~~g~~lyv~t~~------~~~v~v 90 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHK---MDDSYFGEGLTLLNEKLYQVVWL------KNIGFI 90 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEE---CCTTCCEEEEEEETTEEEEEETT------CSEEEE
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEe---cCCCcceEEEEEeCCEEEEEEec------CCEEEE
Confidence 5566555 89999887532 2579999999988554432 33344556778889999998542 467999
Q ss_pred EECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE-eeccCC-CCCCCccccEEE
Q 008260 328 LDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS-RPTQQG-EIPTPRAGHAGV 405 (572)
Q Consensus 328 yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~-~v~~~g-~~p~~R~~~~~~ 405 (572)
||+.+.+=..--+.+ .| .+.+.+ ..++++|+.-| .+.++.+|+++.+-. .+.... ..|..+. ..+.
T Consensus 91 iD~~t~~v~~~i~~g-~~---~g~glt-~Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~-nele 158 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQ-MK---DGWGLA-TDGKILYGSDG------TSILYEIDPHTFKLIKKHNVKYNGHRVIRL-NELE 158 (266)
T ss_dssp EETTTTEEEEEEECC-SS---SCCEEE-ECSSSEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCE-EEEE
T ss_pred EECCCCcEEEEEECC-CC---CeEEEE-ECCCEEEEECC------CCeEEEEECCCCcEEEEEEECCCCcccccc-eeEE
Confidence 999877543222222 12 223333 34566988754 268999999987643 333210 0111111 1233
Q ss_pred EECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 406 TIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 406 ~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
..++ +||+--. ..++|.+.|+.+.
T Consensus 159 ~~dg-----------------~lyvn~~----~~~~V~vID~~tg 182 (266)
T 2iwa_A 159 YING-----------------EVWANIW----QTDCIARISAKDG 182 (266)
T ss_dssp EETT-----------------EEEEEET----TSSEEEEEETTTC
T ss_pred EECC-----------------EEEEecC----CCCeEEEEECCCC
Confidence 3333 6765422 2478999999886
No 62
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.34 E-value=2.1 Score=41.93 Aligned_cols=147 Identities=10% Similarity=0.112 Sum_probs=79.8
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++.+++.|+.+. .+.++|+.+.+-...-.. .+. ...+++.. +++.++.|+.+ ..+.+||+.+.
T Consensus 91 ~~~~l~s~s~D~------~i~lWd~~~~~~~~~~~~--~~~--~~~~~~~spdg~~l~~g~~d------g~v~i~~~~~~ 154 (321)
T 3ow8_A 91 TLPIAASSSLDA------HIRLWDLENGKQIKSIDA--GPV--DAWTLAFSPDSQYLATGTHV------GKVNIFGVESG 154 (321)
T ss_dssp SSSEEEEEETTS------EEEEEETTTTEEEEEEEC--CTT--CCCCEEECTTSSEEEEECTT------SEEEEEETTTC
T ss_pred CCCEEEEEeCCC------cEEEEECCCCCEEEEEeC--CCc--cEEEEEECCCCCEEEEEcCC------CcEEEEEcCCC
Confidence 456667777654 588999887654332211 111 11223333 55667777653 45888888776
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCcccc
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFL 413 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~i 413 (572)
+-...-.. ....-.+++...++.+++.|+.+ ..+.+||+.+.+-...-. + ....-.+++...
T Consensus 155 ~~~~~~~~----~~~~v~~~~~spdg~~lasg~~d-----g~i~iwd~~~~~~~~~~~-~---h~~~v~~l~~sp----- 216 (321)
T 3ow8_A 155 KKEYSLDT----RGKFILSIAYSPDGKYLASGAID-----GIINIFDIATGKLLHTLE-G---HAMPIRSLTFSP----- 216 (321)
T ss_dssp SEEEEEEC----SSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEEC-C---CSSCCCEEEECT-----
T ss_pred ceeEEecC----CCceEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEc-c---cCCceeEEEEcC-----
Confidence 53322111 12222344444566678888765 468899998876433211 1 011111222222
Q ss_pred ceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 414 GLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 414 G~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
.+.+++.|+.++. |.+||..+.
T Consensus 217 -----------d~~~l~s~s~dg~----i~iwd~~~~ 238 (321)
T 3ow8_A 217 -----------DSQLLVTASDDGY----IKIYDVQHA 238 (321)
T ss_dssp -----------TSCEEEEECTTSC----EEEEETTTC
T ss_pred -----------CCCEEEEEcCCCe----EEEEECCCc
Confidence 2267888887755 888887664
No 63
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.33 E-value=0.48 Score=45.72 Aligned_cols=114 Identities=10% Similarity=0.026 Sum_probs=77.3
Q ss_pred cceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceE
Q 008260 247 AGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLH 326 (572)
Q Consensus 247 ~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 326 (572)
+.+.+...++.||+..|..+. +.++|+.+.+-..-. ++..-++.+.+..+++||+.... .+.++
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~------v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~------~~~v~ 119 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGT------LRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT------EGLLF 119 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTE------EEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS------SCEEE
T ss_pred ccceEEEECCEEEEEcCCCCE------EEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc------CCEEE
Confidence 345666668999999997542 889999987643332 23334556788889999998553 46799
Q ss_pred EEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 327 ILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 327 ~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
+||+++.+-..--+. +..+.+.+. .++.||+.-|. +.++.+|+++.+-..
T Consensus 120 V~D~~Tl~~~~ti~~-----~~eGwGLt~-Dg~~L~vSdGs------~~l~~iDp~T~~v~~ 169 (268)
T 3nok_A 120 TWSGMPPQRERTTRY-----SGEGWGLCY-WNGKLVRSDGG------TMLTFHEPDGFALVG 169 (268)
T ss_dssp EEETTTTEEEEEEEC-----SSCCCCEEE-ETTEEEEECSS------SEEEEECTTTCCEEE
T ss_pred EEECCcCcEEEEEeC-----CCceeEEec-CCCEEEEECCC------CEEEEEcCCCCeEEE
Confidence 999988765432222 223344554 45679998662 679999999876543
No 64
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.29 E-value=3 Score=42.68 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=80.7
Q ss_pred EEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEEC
Q 008260 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL 330 (572)
Q Consensus 251 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 330 (572)
++..++..++.|+.+. .+.+||+.+.+-...- ........+..+++..++.|+.+ +.+.+||+
T Consensus 244 ~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d------~~i~i~d~ 306 (445)
T 2ovr_B 244 CVQYDGRRVVSGAYDF------MVKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLD------TSIRVWDV 306 (445)
T ss_dssp EEEECSSCEEEEETTS------CEEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETT------SCEEEEET
T ss_pred EEEECCCEEEEEcCCC------EEEEEECCCCcEeEEe-----cCCCCceEEEEECCCEEEEEeCC------CeEEEEEC
Confidence 3444777777777654 4888888765532221 11111222333466677777754 34889998
Q ss_pred CCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCc
Q 008260 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGEN 410 (572)
Q Consensus 331 ~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~ 410 (572)
.+.+-...-.. ......+....++ +++.|+.+ ..+.+||+.+.+-...-. +.. .......++.+++
T Consensus 307 ~~~~~~~~~~~-----~~~~v~~~~~~~~-~l~~~~~d-----g~i~vwd~~~~~~~~~~~-~~~-~~~~~v~~~~~~~- 372 (445)
T 2ovr_B 307 ETGNCIHTLTG-----HQSLTSGMELKDN-ILVSGNAD-----STVKIWDIKTGQCLQTLQ-GPN-KHQSAVTCLQFNK- 372 (445)
T ss_dssp TTCCEEEEECC-----CCSCEEEEEEETT-EEEEEETT-----SCEEEEETTTCCEEEEEC-STT-SCSSCEEEEEECS-
T ss_pred CCCCEEEEEcC-----CcccEEEEEEeCC-EEEEEeCC-----CeEEEEECCCCcEEEEEc-cCC-CCCCCEEEEEECC-
Confidence 87654322211 1112223334455 67777754 468899987765433211 100 0111122333333
Q ss_pred cccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCcc
Q 008260 411 WFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKST 452 (572)
Q Consensus 411 ~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~~ 452 (572)
.+++.|+.++ .|.+||+.+...
T Consensus 373 ----------------~~l~s~~~dg----~v~iwd~~~~~~ 394 (445)
T 2ovr_B 373 ----------------NFVITSSDDG----TVKLWDLKTGEF 394 (445)
T ss_dssp ----------------SEEEEEETTS----EEEEEETTTCCE
T ss_pred ----------------CEEEEEeCCC----eEEEEECCCCce
Confidence 4777787664 488899877643
No 65
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.29 E-value=0.61 Score=52.35 Aligned_cols=185 Identities=11% Similarity=0.078 Sum_probs=102.5
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceEEecc
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 289 (572)
+.+++||+.+.+|....... ....+..+ -.+++.. ++.||+-. .. ..+.+||+.+.+++....
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~--------~~~~~~~~-i~~i~~d~~g~lWigt-~~------~Gl~~~~~~~~~~~~~~~ 532 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTS--------NSQLLENF-VRSIAQDSEGRFWIGT-FG------GGVGIYTPDMQLVRKFNQ 532 (781)
T ss_dssp TEEEEEESSSSSCCEEECTT--------TSSCSCSC-EEEEEECTTCCEEEEE-SS------SCEEEECTTCCEEEEECT
T ss_pred CceEEEeCCCCeEEecccCc--------ccccccce-eEEEEEcCCCCEEEEE-cC------CCEEEEeCCCCeEEEccC
Confidence 45899999998887765321 00011111 1222222 56777643 21 138889999999988864
Q ss_pred CCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCce-EEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCC
Q 008260 290 YGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDL-HILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGG 367 (572)
Q Consensus 290 ~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v-~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~ 367 (572)
...++.... .+.... ++.|++-.. +.+ .+||+.+.+++........|... ..+++...++.|++.+.
T Consensus 533 ~~~l~~~~i-~~i~~d~~g~lWi~T~--------~Glv~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lW~~t~- 601 (781)
T 3v9f_A 533 YEGFCSNTI-NQIYRSSKGQMWLATG--------EGLVCFPSARNFDYQVFQRKEGLPNTH-IRAISEDKNGNIWASTN- 601 (781)
T ss_dssp TTTCSCSCE-EEEEECTTSCEEEEET--------TEEEEESCTTTCCCEEECGGGTCSCCC-CCEEEECSSSCEEEECS-
T ss_pred CCCCCCCee-EEEEECCCCCEEEEEC--------CCceEEECCCCCcEEEccccCCCCCce-EEEEEECCCCCEEEEcC-
Confidence 222332211 122222 567776432 236 88999988887765432223222 23444444566877653
Q ss_pred CCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeC
Q 008260 368 SHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKP 447 (572)
Q Consensus 368 ~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~ 447 (572)
+.+.+||+.+.++.......-++...+...++.... ++. +.|||.+ -+.+|+|
T Consensus 602 ------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~---------------~G~-l~~g~~~-----Gl~~f~p 654 (781)
T 3v9f_A 602 ------TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDH---------------NGL-IYFGSIN-----GLCFFNP 654 (781)
T ss_dssp ------SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECT---------------TSC-EEEEETT-----EEEEECS
T ss_pred ------CceEEEECCCCceEEecccCCccccccccCceEECC---------------CCE-EEEECCC-----ceEEECh
Confidence 459999999999888754323555444333333332 224 4456654 3677887
Q ss_pred CC
Q 008260 448 SH 449 (572)
Q Consensus 448 ~~ 449 (572)
..
T Consensus 655 ~~ 656 (781)
T 3v9f_A 655 DI 656 (781)
T ss_dssp CC
T ss_pred hh
Confidence 65
No 66
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.25 E-value=0.95 Score=44.10 Aligned_cols=145 Identities=7% Similarity=-0.010 Sum_probs=78.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCC-EEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WEN-KLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~-~iyv~GG~~~~~~~~~ 272 (572)
.+.+|+.++. -+.+.+||+.+.+....-... .....++. -++ .+|+.+... .
T Consensus 9 ~~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~---------------~~~~~~~~s~dg~~l~~~~~~~------~ 62 (331)
T 3u4y_A 9 SNFGIVVEQH-----LRRISFFSTDTLEILNQITLG---------------YDFVDTAITSDCSNVVVTSDFC------Q 62 (331)
T ss_dssp CCEEEEEEGG-----GTEEEEEETTTCCEEEEEECC---------------CCEEEEEECSSSCEEEEEESTT------C
T ss_pred CCEEEEEecC-----CCeEEEEeCcccceeeeEEcc---------------CCcceEEEcCCCCEEEEEeCCC------C
Confidence 4778888652 347999999998876554321 11112222 244 577766533 2
Q ss_pred eEEEEECCCCce-EEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 273 QVKVFDLQTCSW-STLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 273 ~v~~yd~~~~~W-~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
.++++|+.+.+. ......+. .+ .++++.. ++.|| .+...+. ...+++||+.+.+....-.. ...
T Consensus 63 ~i~~~d~~~~~~~~~~~~~~~--~~--~~~~~~s~dg~~l~-~~~~~~~---~~~i~v~d~~~~~~~~~~~~-----~~~ 129 (331)
T 3u4y_A 63 TLVQIETQLEPPKVVAIQEGQ--SS--MADVDITPDDQFAV-TVTGLNH---PFNMQSYSFLKNKFISTIPI-----PYD 129 (331)
T ss_dssp EEEEEECSSSSCEEEEEEECS--SC--CCCEEECTTSSEEE-ECCCSSS---SCEEEEEETTTTEEEEEEEC-----CTT
T ss_pred eEEEEECCCCceeEEecccCC--CC--ccceEECCCCCEEE-EecCCCC---cccEEEEECCCCCeEEEEEC-----CCC
Confidence 799999988775 32222111 11 2213333 44666 3322111 13699999988876554332 122
Q ss_pred ceEEEEEcCC-EEEEEeCCCCCcCcCc-EEEEECCC
Q 008260 350 DHAAAVHAER-YLLIFGGGSHAACFND-LHVLDLQT 383 (572)
Q Consensus 350 ~~~~~~~~~~-~lyv~GG~~~~~~~~~-v~~yd~~t 383 (572)
.+.+++..++ +||+.+..+ +. +.+|++..
T Consensus 130 ~~~~~~spdg~~l~~~~~~~-----~~~i~~~~~~~ 160 (331)
T 3u4y_A 130 AVGIAISPNGNGLILIDRSS-----ANTVRRFKIDA 160 (331)
T ss_dssp EEEEEECTTSSCEEEEEETT-----TTEEEEEEECT
T ss_pred ccceEECCCCCEEEEEecCC-----CceEEEEEECC
Confidence 2455555554 577776532 34 66666543
No 67
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=95.19 E-value=2.2 Score=40.54 Aligned_cols=151 Identities=9% Similarity=0.001 Sum_probs=83.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~ 273 (572)
+++||+.... .+.+.+||+. .+...+.... ....-++++.. ++.+|+..... ..
T Consensus 30 ~g~l~v~~~~-----~~~v~~~~~~-~~~~~~~~~~-------------~~~~~~~i~~~~~g~l~v~~~~~------~~ 84 (300)
T 2qc5_A 30 DGKVWFTQHK-----ANKISSLDQS-GRIKEFEVPT-------------PDAKVMCLIVSSLGDIWFTENGA------NK 84 (300)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEECSS-------------TTCCEEEEEECTTSCEEEEETTT------TE
T ss_pred CCCEEEEcCC-----CCeEEEECCC-CceEEEECCC-------------CCCcceeEEECCCCCEEEEecCC------Ce
Confidence 4778886531 2468899988 6666543210 11122333333 57888865322 36
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceE
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~ 352 (572)
+.+||+. .++..+... .....-+.+++. ++.||+.... .+.+++||++ .+....... .....-++
T Consensus 85 v~~~d~~-g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~~---~~~~~~~~ 150 (300)
T 2qc5_A 85 IGKLSKK-GGFTEYPLP---QPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDLP---NKGSYPAF 150 (300)
T ss_dssp EEEECTT-SCEEEEECS---STTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEECS---STTCCEEE
T ss_pred EEEECCC-CCeEEecCC---CCCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccCC---CCCCCcee
Confidence 8899988 777655421 111223344443 5788876532 2458899987 665544321 11122334
Q ss_pred EEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 353 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
.++..++.||+....+ ..+++||+ +.+...+.
T Consensus 151 i~~d~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~~ 182 (300)
T 2qc5_A 151 ITLGSDNALWFTENQN-----NSIGRITN-TGKLEEYP 182 (300)
T ss_dssp EEECTTSSEEEEETTT-----TEEEEECT-TCCEEEEE
T ss_pred EEECCCCCEEEEecCC-----CeEEEECC-CCcEEEee
Confidence 4444455688865321 46899998 66666553
No 68
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.18 E-value=2.6 Score=41.28 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=79.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~ 273 (572)
+++.++.|+. ...+.+||..+.+-...-.. ....-.+++. -+++.++.|+.+. .
T Consensus 133 dg~~l~~g~~-----dg~v~i~~~~~~~~~~~~~~--------------~~~~v~~~~~spdg~~lasg~~dg------~ 187 (321)
T 3ow8_A 133 DSQYLATGTH-----VGKVNIFGVESGKKEYSLDT--------------RGKFILSIAYSPDGKYLASGAIDG------I 187 (321)
T ss_dssp TSSEEEEECT-----TSEEEEEETTTCSEEEEEEC--------------SSSCEEEEEECTTSSEEEEEETTS------C
T ss_pred CCCEEEEEcC-----CCcEEEEEcCCCceeEEecC--------------CCceEEEEEECCCCCEEEEEcCCC------e
Confidence 4556666653 23578888877653322111 1111112222 2677777887654 4
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceE
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~ 352 (572)
+.+||+.+.+-...-. + . ...-.+++.. ++.+++.|+.++ .+.+||+.+......-.. ....-.+
T Consensus 188 i~iwd~~~~~~~~~~~-~-h--~~~v~~l~~spd~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~----h~~~v~~ 253 (321)
T 3ow8_A 188 INIFDIATGKLLHTLE-G-H--AMPIRSLTFSPDSQLLVTASDDG------YIKIYDVQHANLAGTLSG----HASWVLN 253 (321)
T ss_dssp EEEEETTTTEEEEEEC-C-C--SSCCCEEEECTTSCEEEEECTTS------CEEEEETTTCCEEEEECC----CSSCEEE
T ss_pred EEEEECCCCcEEEEEc-c-c--CCceeEEEEcCCCCEEEEEcCCC------eEEEEECCCcceeEEEcC----CCCceEE
Confidence 8899998775433211 0 1 1111223333 567777887643 488999887664332211 1111223
Q ss_pred EEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 353 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
.+...++.+++.|+.+ ..+.++|+.+.+-.
T Consensus 254 ~~~sp~~~~l~s~s~D-----~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSD-----KSVKVWDVGTRTCV 283 (321)
T ss_dssp EEECTTSSEEEEEETT-----SCEEEEETTTTEEE
T ss_pred EEECCCCCEEEEEeCC-----CcEEEEeCCCCEEE
Confidence 3344455577778765 46889998876543
No 69
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.17 E-value=0.86 Score=46.23 Aligned_cols=153 Identities=11% Similarity=0.111 Sum_probs=78.0
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
++.+++.|+.+. .|.+||..+.+-...-. .....-.+++.. +..+++.||-.. -..+.+||+.+
T Consensus 228 ~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs~----d~~i~i~d~~~ 293 (401)
T 4aez_A 228 DGLQLASGGNDN------VVQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGTM----DKQIHFWNAAT 293 (401)
T ss_dssp TSSEEEEEETTS------CEEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCTT----TCEEEEEETTT
T ss_pred CCCEEEEEeCCC------eEEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCCC----CCEEEEEECCC
Confidence 667778887654 58899988755332211 111112233333 456777775211 24589999887
Q ss_pred CcEEEeeCCCCCCCcccceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCcc
Q 008260 333 MTWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENW 411 (572)
Q Consensus 333 ~~W~~v~~~g~~p~~R~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~ 411 (572)
.+-...-.. ...-.+++... +..|++.+|... ..+.+||..+.....+.... ....+. .+++...+
T Consensus 294 ~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~d----g~i~v~~~~~~~~~~~~~~~-~h~~~v-~~~~~s~d-- 360 (401)
T 4aez_A 294 GARVNTVDA-----GSQVTSLIWSPHSKEIMSTHGFPD----NNLSIWSYSSSGLTKQVDIP-AHDTRV-LYSALSPD-- 360 (401)
T ss_dssp CCEEEEEEC-----SSCEEEEEECSSSSEEEEEECTTT----CEEEEEEEETTEEEEEEEEE-CCSSCC-CEEEECTT--
T ss_pred CCEEEEEeC-----CCcEEEEEECCCCCeEEEEeecCC----CcEEEEecCCccceeEEEec-CCCCCE-EEEEECCC--
Confidence 764433222 11122333333 344555545332 46888888887666542100 001111 12222222
Q ss_pred ccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCcc
Q 008260 412 FLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKST 452 (572)
Q Consensus 412 ~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~~ 452 (572)
+.+++.||.++ .+.+||+.+..-
T Consensus 361 --------------g~~l~s~~~dg----~i~iw~~~~~~~ 383 (401)
T 4aez_A 361 --------------GRILSTAASDE----NLKFWRVYDGDH 383 (401)
T ss_dssp --------------SSEEEEECTTS----EEEEEECCC---
T ss_pred --------------CCEEEEEeCCC----cEEEEECCCCcc
Confidence 25777787664 488888876543
No 70
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.15 E-value=2.1 Score=43.16 Aligned_cols=154 Identities=13% Similarity=0.052 Sum_probs=80.3
Q ss_pred EEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcE
Q 008260 257 KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTW 335 (572)
Q Consensus 257 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W 335 (572)
.+++.|+.+. .+.+||+.+.+....-.. ......-.+++.. ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 145 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 145 NVLLSAGCDN------VILVWDVGTGAAVLTLGP--DVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTV 210 (402)
T ss_dssp TEEEEEETTS------CEEEEETTTTEEEEEECT--TTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEE
T ss_pred CEEEEEcCCC------EEEEEECCCCCccEEEec--CCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCce
Confidence 5777777654 488999988765433210 0111122233333 56677777753 4589999988764
Q ss_pred EEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcE--EeeccCCCCCCCccccEEEEECCcccc
Q 008260 336 DEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW--SRPTQQGEIPTPRAGHAGVTIGENWFL 413 (572)
Q Consensus 336 ~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W--~~v~~~g~~p~~R~~~~~~~~~~~~~i 413 (572)
...-..+ ........++...++.+++.|.... .-..+.+||+.+..- .... ......-.+++...+
T Consensus 211 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~s~~---- 278 (402)
T 2aq5_A 211 VAEKDRP--HEGTRPVHAVFVSEGKILTTGFSRM--SERQVALWDTKHLEEPLSLQE----LDTSSGVLLPFFDPD---- 278 (402)
T ss_dssp EEEEECS--SCSSSCCEEEECSTTEEEEEEECTT--CCEEEEEEETTBCSSCSEEEE----CCCCSSCEEEEEETT----
T ss_pred eeeeccC--CCCCcceEEEEcCCCcEEEEeccCC--CCceEEEEcCccccCCceEEe----ccCCCceeEEEEcCC----
Confidence 3332110 1112223444556677777772110 115688999876431 1111 111111223333333
Q ss_pred ceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCc
Q 008260 414 GLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 414 G~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
...|++.|+.++ .|.+||..+..
T Consensus 279 -----------~~~l~~~g~~dg----~i~i~d~~~~~ 301 (402)
T 2aq5_A 279 -----------TNIVYLCGKGDS----SIRYFEITSEA 301 (402)
T ss_dssp -----------TTEEEEEETTCS----CEEEEEECSST
T ss_pred -----------CCEEEEEEcCCC----eEEEEEecCCC
Confidence 336777776665 47888877654
No 71
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.12 E-value=3 Score=41.63 Aligned_cols=150 Identities=13% Similarity=0.154 Sum_probs=83.1
Q ss_pred EEEECCEEEEEccCCCCcccCcEEEEEcCCCc--EEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCC
Q 008260 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDP 268 (572)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~ 268 (572)
.++.++.||+..+ -..++.||+.+.+ |+.-.... ....+...+.+..++.||+ |..+
T Consensus 139 p~~~~~~v~v~~~------~g~l~~~d~~tG~~~W~~~~~~~-----------~~~~~~~~~~~~~~~~v~~-g~~~--- 197 (376)
T 3q7m_A 139 PVVSDGLVLIHTS------NGQLQALNEADGAVKWTVNLDMP-----------SLSLRGESAPTTAFGAAVV-GGDN--- 197 (376)
T ss_dssp CEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC----------------CCCCCCEEETTEEEE-CCTT---
T ss_pred CEEECCEEEEEcC------CCeEEEEECCCCcEEEEEeCCCC-----------ceeecCCCCcEEECCEEEE-EcCC---
Confidence 3455788877543 1369999998765 76543211 0011222333445777776 3221
Q ss_pred CcceeEEEEECCCC--ceEEeccCCCCCCC-----C---cceEEEEECCEEEEEecCCCCCCCCCceEEEECCCC--cEE
Q 008260 269 SEIIQVKVFDLQTC--SWSTLKTYGKPPVS-----R---GGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWD 336 (572)
Q Consensus 269 ~~~~~v~~yd~~~~--~W~~~~~~g~~p~~-----R---~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~ 336 (572)
..+..||+.+. .|+.-.. .|.. | .....++.++.||+.+. ...++.+|+.+. .|+
T Consensus 198 ---g~l~~~d~~tG~~~w~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-------~g~l~~~d~~tG~~~w~ 264 (376)
T 3q7m_A 198 ---GRVSAVLMEQGQMIWQQRIS---QATGSTEIDRLSDVDTTPVVVNGVVFALAY-------NGNLTALDLRSGQIMWK 264 (376)
T ss_dssp ---TEEEEEETTTCCEEEEEECC---C-----------CCCCCCEEETTEEEEECT-------TSCEEEEETTTCCEEEE
T ss_pred ---CEEEEEECCCCcEEEEEecc---cCCCCcccccccccCCCcEEECCEEEEEec-------CcEEEEEECCCCcEEee
Confidence 26889998765 4765431 1111 1 12233455788887542 235899998766 476
Q ss_pred EeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc--EEee
Q 008260 337 EIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WSRP 389 (572)
Q Consensus 337 ~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~v 389 (572)
... +. ....+..++.||+.... ..+++||+.+.+ |+.-
T Consensus 265 ~~~-----~~----~~~~~~~~~~l~~~~~~------g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 265 REL-----GS----VNDFIVDGNRIYLVDQN------DRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp ECC-----CC----EEEEEEETTEEEEEETT------CCEEEEETTTCCEEEEEC
T ss_pred ccC-----CC----CCCceEECCEEEEEcCC------CeEEEEECCCCcEEEeec
Confidence 432 11 12233446668886542 469999988765 7653
No 72
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.05 E-value=5.2 Score=44.02 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=73.2
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCCc--EEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCC
Q 008260 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (572)
Q Consensus 189 ~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 266 (572)
.+-++.++.||+... .+.++.+|..+.+ |+.-....... .+.........+.+..+++||+...
T Consensus 71 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~~v~v~~~--- 136 (677)
T 1kb0_A 71 ATPVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRST-----GFKGCCDVVNRGVALWKGKVYVGAW--- 136 (677)
T ss_dssp CCCEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGG-----GGGSSSCSCCCCCEEETTEEEEECT---
T ss_pred eCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccc-----cccccccCCCCCceEECCEEEEEcC---
Confidence 445677999999865 2479999998764 87643321000 0000000112244557888888632
Q ss_pred CCCcceeEEEEECCCCc--eEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCc--EEEee
Q 008260 267 DPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEID 339 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~--W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~v~ 339 (572)
...+..+|..+.+ |+.-.............+-++.++.+|+-.+... ......++.||..|.+ |+.-.
T Consensus 137 ----dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 137 ----DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp ----TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred ----CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEEecc
Confidence 1368999988764 8765320011111122233456888876543222 1124679999998764 87654
No 73
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.00 E-value=0.89 Score=42.88 Aligned_cols=158 Identities=11% Similarity=0.067 Sum_probs=82.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCC-CcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRS-WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t-~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~ 273 (572)
+++.+++++ -..++++|+.+ .+...+.... ...........-+++.+++++.... ....
T Consensus 52 dg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~------------~~~~~~~~~~spdg~~l~~~~~~~~--~~~~ 111 (297)
T 2ojh_A 52 DGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGF------------ATICNNDHGISPDGALYAISDKVEF--GKSA 111 (297)
T ss_dssp TSSEEEEEE------TTEEEEEESSSCCSCEECCCTT------------CCCBCSCCEECTTSSEEEEEECTTT--SSCE
T ss_pred CCCEEEEEc------CCeEEEEeCCCCCCceEecccc------------ccccccceEECCCCCEEEEEEeCCC--Ccce
Confidence 455555554 13799999988 7766553211 0111111222235666666654322 3457
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
++.+|..+.+...+... .. ....... +..|++.++.++. -.+|.+|+.+.....+... .....
T Consensus 112 l~~~~~~~~~~~~~~~~----~~--~~~~~~spdg~~l~~~~~~~~~----~~l~~~~~~~~~~~~~~~~-----~~~~~ 176 (297)
T 2ojh_A 112 IYLLPSTGGTPRLMTKN----LP--SYWHGWSPDGKSFTYCGIRDQV----FDIYSMDIDSGVETRLTHG-----EGRND 176 (297)
T ss_dssp EEEEETTCCCCEECCSS----SS--EEEEEECTTSSEEEEEEEETTE----EEEEEEETTTCCEEECCCS-----SSCEE
T ss_pred EEEEECCCCceEEeecC----CC--ccceEECCCCCEEEEEECCCCc----eEEEEEECCCCcceEcccC-----CCccc
Confidence 89999887776555421 11 2223333 3456655554322 2578888887777665432 11222
Q ss_pred EEEEEcCC-EEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 352 AAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 352 ~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
..+...++ .|++.+..+. ...+|.+++.......+.
T Consensus 177 ~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 177 GPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp EEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECC
T ss_pred cceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEe
Confidence 33333444 3444443222 256888888777776653
No 74
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=94.88 E-value=2.7 Score=39.92 Aligned_cols=197 Identities=9% Similarity=0.077 Sum_probs=102.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE--eCCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP--WENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~--~~~~iyv~GG~~~~~~~~~ 272 (572)
+++||+.+.. ...+.+||+.......+..... . ......-+.++. -++.||+.+... ..
T Consensus 40 ~g~l~v~~~~-----~~~i~~~d~~g~~~~~~~~~~~--------~-~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~ 100 (286)
T 1q7f_A 40 QNDIIVADTN-----NHRIQIFDKEGRFKFQFGECGK--------R-DSQLLYPNRVAVVRNSGDIIVTERSP-----TH 100 (286)
T ss_dssp TCCEEEEEGG-----GTEEEEECTTSCEEEEECCBSS--------S-TTCBSSEEEEEEETTTTEEEEEECGG-----GC
T ss_pred CCCEEEEECC-----CCEEEEECCCCcEEEEecccCC--------C-cccccCceEEEEEcCCCeEEEEcCCC-----CC
Confidence 4678887542 2468999987554433322110 0 000112233444 268899886431 23
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
.+.+||.....-..+.. +....-+.+++. +++||+.... .+.+.+||++......+...+ ....-.
T Consensus 101 ~i~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~---~~~~p~ 167 (286)
T 1q7f_A 101 QIQIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSK---HLEFPN 167 (286)
T ss_dssp EEEEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTT---TCSSEE
T ss_pred EEEEECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCC---ccCCcE
Confidence 68899965544444421 111122334443 5678887543 346899998766555553221 111223
Q ss_pred EEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEE
Q 008260 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAF 431 (572)
Q Consensus 352 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~ 431 (572)
+.++..++.||+....+ +.|.+||+.......+...+.+. ....+.++. .+.||+.
T Consensus 168 ~i~~~~~g~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~g~~~----~p~~i~~d~---------------~G~l~v~ 223 (286)
T 1q7f_A 168 GVVVNDKQEIFISDNRA-----HCVKVFNYEGQYLRQIGGEGITN----YPIGVGINS---------------NGEILIA 223 (286)
T ss_dssp EEEECSSSEEEEEEGGG-----TEEEEEETTCCEEEEESCTTTSC----SEEEEEECT---------------TCCEEEE
T ss_pred EEEECCCCCEEEEECCC-----CEEEEEcCCCCEEEEEccCCccC----CCcEEEECC---------------CCCEEEE
Confidence 45555567788876432 56999998766555553222111 122333332 2367776
Q ss_pred cCCCCCccCcEEEEeCCCC
Q 008260 432 GGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 432 GG~~~~~~~dv~~yd~~~~ 450 (572)
...++ ..|.+||+...
T Consensus 224 ~~~~~---~~i~~~~~~g~ 239 (286)
T 1q7f_A 224 DNHNN---FNLTIFTQDGQ 239 (286)
T ss_dssp ECSSS---CEEEEECTTSC
T ss_pred eCCCC---EEEEEECCCCC
Confidence 64331 15888886543
No 75
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=94.77 E-value=2.1 Score=40.11 Aligned_cols=187 Identities=11% Similarity=0.028 Sum_probs=95.8
Q ss_pred CCEEEE-EccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYI-YGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv-~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~ 272 (572)
+++||+ .... .+.+.+||+.+......... ....-++++.. ++.||+... . .
T Consensus 34 ~g~l~v~~~~~-----~~~i~~~~~~~~~~~~~~~~--------------~~~~p~~i~~~~~g~l~v~~~-~------~ 87 (270)
T 1rwi_B 34 AGNVYVTSEGM-----YGRVVKLATGSTGTTVLPFN--------------GLYQPQGLAVDGAGTVYVTDF-N------N 87 (270)
T ss_dssp TCCEEEEECSS-----SCEEEEECC-----EECCCC--------------SCCSCCCEEECTTCCEEEEET-T------T
T ss_pred CCCEEEEccCC-----CCcEEEecCCCcccceEeeC--------------CcCCcceeEECCCCCEEEEcC-C------C
Confidence 467888 4331 24688888876654433211 00111233333 567888765 2 2
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
.+.+||+.......+... ....-+++++. +++||+.... .+.+++||..+......... ....-.
T Consensus 88 ~i~~~d~~~~~~~~~~~~----~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~----~~~~p~ 153 (270)
T 1rwi_B 88 RVVTLAAGSNNQTVLPFD----GLNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFT----GLNDPD 153 (270)
T ss_dssp EEEEECTTCSCCEECCCC----SCSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCC----SCCSCC
T ss_pred EEEEEeCCCceEeeeecC----CcCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccc----cCCCce
Confidence 689999888765544311 11122344443 5678887542 34588888766655433221 111223
Q ss_pred EEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEE
Q 008260 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAF 431 (572)
Q Consensus 352 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~ 431 (572)
+.++..++.||+....+ +.+.+||+.+..-...... .+ .....+.++. .+.||+.
T Consensus 154 ~i~~~~~g~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~-~~----~~p~~i~~d~---------------~g~l~v~ 208 (270)
T 1rwi_B 154 GVAVDNSGNVYVTDTDN-----NRVVKLEAESNNQVVLPFT-DI----TAPWGIAVDE---------------AGTVYVT 208 (270)
T ss_dssp CEEECTTCCEEEEEGGG-----TEEEEECTTTCCEEECCCS-SC----CSEEEEEECT---------------TCCEEEE
T ss_pred eEEEeCCCCEEEEECCC-----CEEEEEecCCCceEeeccc-CC----CCceEEEECC---------------CCCEEEE
Confidence 44454455688876432 4689999887664433211 11 1122333332 2367776
Q ss_pred cCCCCCccCcEEEEeCCCC
Q 008260 432 GGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 432 GG~~~~~~~dv~~yd~~~~ 450 (572)
...+ +.|.+||+...
T Consensus 209 ~~~~----~~v~~~~~~~~ 223 (270)
T 1rwi_B 209 EHNT----NQVVKLLAGST 223 (270)
T ss_dssp ETTT----SCEEEECTTCS
T ss_pred ECCC----CcEEEEcCCCC
Confidence 5432 45889988664
No 76
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=94.76 E-value=2.8 Score=40.22 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=82.9
Q ss_pred CCEEEEEccCC--CCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-C-CEEEEEeccCCCCCc
Q 008260 195 QDKMYIYGGNH--NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-E-NKLLSIAGHTKDPSE 270 (572)
Q Consensus 195 ~~~lyv~GG~~--~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~-~~iyv~GG~~~~~~~ 270 (572)
++.||+..... .......+++||+.+.++..+..... ......-++++.. + ++||+....
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~----------~~~~~~~~~i~~~~~~g~l~v~~~~------ 91 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV----------NGYGGIPAGCQCDRDANQLFVADMR------ 91 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE----------TTEECCEEEEEECSSSSEEEEEETT------
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEeccc----------CCCCCCCceEEEecCCCcEEEEECC------
Confidence 57788871100 01122469999998888876542100 0000112233332 5 788887642
Q ss_pred ceeEEEEECCCCceEEe-ccCCCCCCCCcceEEEEE-CCEEEEEecCCC---------CCCCCCceEEEECCCCcEEEee
Q 008260 271 IIQVKVFDLQTCSWSTL-KTYGKPPVSRGGQSVTLV-GTSLVIFGGEDA---------KRSLLNDLHILDLETMTWDEID 339 (572)
Q Consensus 271 ~~~v~~yd~~~~~W~~~-~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~---------~~~~~~~v~~yd~~t~~W~~v~ 339 (572)
..+.+||+. .+...+ ...........-+.++.. +++||+...... .......+++||++ .+...+.
T Consensus 92 -~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 92 -LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp -TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred -CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 268899998 776665 321111111122233333 568887654321 11113568999987 5555442
Q ss_pred CCCCCCCcccceEEEEE----cCC-EEEEEeCCCCCcCcCcEEEEECC-CCcE
Q 008260 340 AVGVPPSPRSDHAAAVH----AER-YLLIFGGGSHAACFNDLHVLDLQ-TMEW 386 (572)
Q Consensus 340 ~~g~~p~~R~~~~~~~~----~~~-~lyv~GG~~~~~~~~~v~~yd~~-t~~W 386 (572)
.. .......++. .++ .||+....+ +.+++||+. +.++
T Consensus 169 ~~-----~~~~~~i~~~~~~d~dg~~l~v~~~~~-----~~i~~~~~~~~g~~ 211 (314)
T 1pjx_A 169 TA-----FQFPNGIAVRHMNDGRPYQLIVAETPT-----KKLWSYDIKGPAKI 211 (314)
T ss_dssp EE-----ESSEEEEEEEECTTSCEEEEEEEETTT-----TEEEEEEEEETTEE
T ss_pred cC-----CCCcceEEEecccCCCCCEEEEEECCC-----CeEEEEECCCCCcc
Confidence 21 0111334444 454 577765332 568899876 4443
No 77
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=94.74 E-value=2.9 Score=39.61 Aligned_cols=156 Identities=8% Similarity=-0.030 Sum_probs=83.7
Q ss_pred eeEEEE-CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCC
Q 008260 189 HGAAVV-QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTK 266 (572)
Q Consensus 189 ~s~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~ 266 (572)
+++++. ++.||+.... .+.+++||+. .++....... ....-+.++.. ++.+|+.....
T Consensus 65 ~~i~~~~~g~l~v~~~~-----~~~v~~~d~~-g~~~~~~~~~-------------~~~~~~~i~~~~~g~l~v~~~~~- 124 (300)
T 2qc5_A 65 MCLIVSSLGDIWFTENG-----ANKIGKLSKK-GGFTEYPLPQ-------------PDSGPYGITEGLNGDIWFTQLNG- 124 (300)
T ss_dssp EEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECSS-------------TTCCEEEEEECSTTCEEEEETTT-
T ss_pred eeEEECCCCCEEEEecC-----CCeEEEECCC-CCeEEecCCC-------------CCCCCccceECCCCCEEEEccCC-
Confidence 334433 4678886431 2358999988 6665443210 11222333333 67888875322
Q ss_pred CCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCC
Q 008260 267 DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPP 345 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p 345 (572)
..+.+||+. .+........ ....-+..+.. +++||+.... .+.+++||+ +.+...+....
T Consensus 125 -----~~i~~~~~~-g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~--- 185 (300)
T 2qc5_A 125 -----DRIGKLTAD-GTIYEYDLPN---KGSYPAFITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYPLPT--- 185 (300)
T ss_dssp -----TEEEEECTT-SCEEEEECSS---TTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSS---
T ss_pred -----CeEEEECCC-CCEEEccCCC---CCCCceeEEECCCCCEEEEecC------CCeEEEECC-CCcEEEeeCCC---
Confidence 368899987 6665543110 11222333333 4678876432 245899998 66666654211
Q ss_pred CcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 346 SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 346 ~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
....-.+.++..++.||+..... +.+++||+ +.++...
T Consensus 186 ~~~~~~~i~~d~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 186 NAAAPVGITSGNDGALWFVEIMG-----NKIGRITT-TGEISEY 223 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTT-----TEEEEECT-TCCEEEE
T ss_pred CCCCcceEEECCCCCEEEEccCC-----CEEEEEcC-CCcEEEE
Confidence 11222334444455688865321 46899998 5666655
No 78
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=94.73 E-value=3.1 Score=41.42 Aligned_cols=146 Identities=10% Similarity=0.012 Sum_probs=81.3
Q ss_pred EEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcceeE
Q 008260 197 KMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 197 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~v 274 (572)
++++.|+.+ ..+.+||+.+.+........ .....-.+++.. ++.+++.|+.+. .+
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~~l~s~~~d~------~i 143 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQGM------------GPGDAITGMKFNQFNTNQLFVSSIRG------AT 143 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTSTTCEEEECCC------------STTCBEEEEEEETTEEEEEEEEETTT------EE
T ss_pred CEEEEEcCC-----CeEEEEeCCCcccceeeecC------------CcCCceeEEEeCCCCCCEEEEEeCCC------EE
Confidence 577777632 35889999887766554321 011111222222 346777776653 58
Q ss_pred EEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEE
Q 008260 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAA 353 (572)
Q Consensus 275 ~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~ 353 (572)
.+||+.+.....+... ......-.+++.. ++.+++.|+.+ ..+.+||+....-..+... ...-.++
T Consensus 144 ~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~h-----~~~v~~~ 210 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKT--DSWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKLH-----KAKVTHA 210 (383)
T ss_dssp EEEETTSCEEEEEECC--CCSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEECS-----SSCEEEE
T ss_pred EEEECCCCceEEEecc--CCCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEeccC-----CCcEEEE
Confidence 8999988776666421 1111112233333 45667777653 4588999865554444321 1222333
Q ss_pred EEEcCCE-EEEEeCCCCCcCcCcEEEEECCC
Q 008260 354 AVHAERY-LLIFGGGSHAACFNDLHVLDLQT 383 (572)
Q Consensus 354 ~~~~~~~-lyv~GG~~~~~~~~~v~~yd~~t 383 (572)
+...++. +++.|+.+ ..+.+||+.+
T Consensus 211 ~~~~~~~~~l~s~~~d-----~~i~iwd~~~ 236 (383)
T 3ei3_B 211 EFNPRCDWLMATSSVD-----ATVKLWDLRN 236 (383)
T ss_dssp EECSSCTTEEEEEETT-----SEEEEEEGGG
T ss_pred EECCCCCCEEEEEeCC-----CEEEEEeCCC
Confidence 4444444 77777754 4688899876
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=94.58 E-value=0.19 Score=50.40 Aligned_cols=152 Identities=11% Similarity=0.181 Sum_probs=75.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
++++++.|+.+ ..+.+||+.+..|..+.... ........+.+ ++.+++.|+.+.
T Consensus 22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~-------------~h~~~v~~~~~s~~~~~l~s~s~d~------ 77 (377)
T 3dwl_C 22 QRTEFVTTTAT-----NQVELYEQDGNGWKHARTFS-------------DHDKIVTCVDWAPKSNRIVTCSQDR------ 77 (377)
T ss_dssp SSSEEECCCSS-----SCBCEEEEETTEEEECCCBC-------------CCSSCEEEEEECTTTCCEEEEETTS------
T ss_pred CCCEEEEecCC-----CEEEEEEccCCceEEEEEEe-------------cCCceEEEEEEeCCCCEEEEEeCCC------
Confidence 45666777632 35778888888887766543 11112222223 567777777654
Q ss_pred eEEEEECCCCc-eEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCc-EEEeeCCCCCCCccc
Q 008260 273 QVKVFDLQTCS-WSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMT-WDEIDAVGVPPSPRS 349 (572)
Q Consensus 273 ~v~~yd~~~~~-W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~v~~~g~~p~~R~ 349 (572)
.+.+||+.+.+ |...... ......-.+++.. ++++++.|+.++ .+.+||+.+.+ |..+.... .+....
T Consensus 78 ~v~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~-~~h~~~ 148 (377)
T 3dwl_C 78 NAYVYEKRPDGTWKQTLVL--LRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHLK-RPLRST 148 (377)
T ss_dssp SEEEC------CCCCEEEC--CCCSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEEC-SSCCSC
T ss_pred eEEEEEcCCCCceeeeeEe--cccCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEee-cccCCC
Confidence 48888888776 5444321 1111112222222 456677777543 47788877654 32222220 012222
Q ss_pred ceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 350 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
-.+++...++.+++.|+.+ ..+.+||+.+.
T Consensus 149 v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~ 178 (377)
T 3dwl_C 149 ILSLDWHPNNVLLAAGCAD-----RKAYVLSAYVR 178 (377)
T ss_dssp EEEEEECTTSSEEEEEESS-----SCEEEEEECCS
T ss_pred eEEEEEcCCCCEEEEEeCC-----CEEEEEEEEec
Confidence 3344444555678888764 45788887543
No 80
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=94.55 E-value=1.1 Score=44.85 Aligned_cols=151 Identities=15% Similarity=0.090 Sum_probs=76.6
Q ss_pred EEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCC
Q 008260 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPS 269 (572)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~ 269 (572)
++...+..+++|+. -..+.+||+.+.+-...-.. ....-.+++.. ++.+++.|+.+.
T Consensus 212 ~~~~~~~~~~~~~~-----~g~i~~~d~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~~d~--- 269 (425)
T 1r5m_A 212 VEWVDDDKFVIPGP-----KGAIFVYQITEKTPTGKLIG--------------HHGPISVLEFNDTNKLLLSASDDG--- 269 (425)
T ss_dssp CEEEETTEEEEECG-----GGCEEEEETTCSSCSEEECC--------------CSSCEEEEEEETTTTEEEEEETTS---
T ss_pred EEEcCCCEEEEEcC-----CCeEEEEEcCCCceeeeecc--------------CCCceEEEEECCCCCEEEEEcCCC---
Confidence 33333444666663 24689999887532211110 11111222222 566777777544
Q ss_pred cceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 270 EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 270 ~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
.+.+||..+.+....-. .....-.+++...+.+++.|+.+ ..+.+||+.+.+-...-.. ....
T Consensus 270 ---~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~----~~~~ 332 (425)
T 1r5m_A 270 ---TLRIWHGGNGNSQNCFY----GHSQSIVSASWVGDDKVISCSMD------GSVRLWSLKQNTLLALSIV----DGVP 332 (425)
T ss_dssp ---CEEEECSSSBSCSEEEC----CCSSCEEEEEEETTTEEEEEETT------SEEEEEETTTTEEEEEEEC----TTCC
T ss_pred ---EEEEEECCCCccceEec----CCCccEEEEEECCCCEEEEEeCC------CcEEEEECCCCcEeEeccc----CCcc
Confidence 48889887754332211 11112233444433266666653 3588999887654333211 1112
Q ss_pred ceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 350 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
-.+++...++.+++.|+.+ ..+.+||+.+..
T Consensus 333 i~~~~~s~~~~~l~~~~~d-----g~i~i~~~~~~~ 363 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMD-----GQVNVYDLKKLN 363 (425)
T ss_dssp EEEEEECTTSSEEEEEETT-----SCEEEEECHHHH
T ss_pred EEEEEEcCCCCEEEEEECC-----CeEEEEECCCCc
Confidence 2333444455577777754 468888876554
No 81
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=94.52 E-value=1.7 Score=42.84 Aligned_cols=155 Identities=12% Similarity=0.142 Sum_probs=77.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
++++++.|+.+ ..+.+||+.+.++....... ... .....+.+ ++.+++.|+.+.
T Consensus 63 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~------------~~~-~~v~~~~~~~~~~~l~~~~~d~------ 118 (372)
T 1k8k_C 63 DSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVIL------------RIN-RAARCVRWAPNEKKFAVGSGSR------ 118 (372)
T ss_dssp TTTEEEEEETT-----SCEEEEEEETTEEEEEEECC------------CCS-SCEEEEEECTTSSEEEEEETTS------
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCeeeeeEEee------------cCC-CceeEEEECCCCCEEEEEeCCC------
Confidence 45666676632 35889999888876654432 111 11222222 566777777643
Q ss_pred eEEEEECCCCc-eEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC----------------c
Q 008260 273 QVKVFDLQTCS-WSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM----------------T 334 (572)
Q Consensus 273 ~v~~yd~~~~~-W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~----------------~ 334 (572)
.+.+||..+.. |...... ..+....-.+++.. ++.+++.|+.+ ..+.+||+... .
T Consensus 119 ~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (372)
T 1k8k_C 119 VISICYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSVLLAAGSCD------FKCRIFSAYIKEVEERPAPTPWGSKMPF 191 (372)
T ss_dssp SEEEEEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSSEEEEEETT------SCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred EEEEEEecCCCcceeeeee-ecccCCCeeEEEEcCCCCEEEEEcCC------CCEEEEEcccccccccccccccccccch
Confidence 36666665543 3332211 11111222233333 55677777753 34788885421 1
Q ss_pred EEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 335 WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 335 W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
-..+.... .....-.+++...++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 192 ~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 192 GELMFESS--SSCGWVHGVCFSANGSRVAWVSHD-----STVCLADADKKMAV 237 (372)
T ss_dssp TCEEEECC--CCSSCEEEEEECSSSSEEEEEETT-----TEEEEEEGGGTTEE
T ss_pred hhheEecC--CCCCeEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcee
Confidence 11111110 111122233343455577777654 46889998776543
No 82
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=94.50 E-value=0.38 Score=48.29 Aligned_cols=189 Identities=14% Similarity=0.092 Sum_probs=93.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
+++.++.|+.+ ..+.++|+.+.+-...-.. ....-.+++.. ++.+++.||.+.
T Consensus 150 dg~~l~sgs~d-----g~v~iwd~~~~~~~~~~~~--------------h~~~v~~v~~s~~~~~~~~s~~~dg------ 204 (357)
T 4g56_B 150 DGTQAVSGGKD-----FSVKVWDLSQKAVLKSYNA--------------HSSEVNCVAACPGKDTIFLSCGEDG------ 204 (357)
T ss_dssp SSSEEEEEETT-----SCEEEEETTTTEEEEEECC--------------CSSCEEEEEECTTCSSCEEEEETTS------
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEcC--------------CCCCEEEEEEccCCCceeeeeccCC------
Confidence 45667777632 2488899888654332110 11111122222 345777777654
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE---CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV---GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
.|.+||+.+.+-..... .........++.+ ++.+++.|+.+ ..+.+||+.+.+-...-.. .. ..
T Consensus 205 ~v~~wd~~~~~~~~~~~---~~~~~~~v~~v~~sp~~~~~la~g~~d------~~i~~wd~~~~~~~~~~~~---~~-~~ 271 (357)
T 4g56_B 205 RILLWDTRKPKPATRID---FCASDTIPTSVTWHPEKDDTFACGDET------GNVSLVNIKNPDSAQTSAV---HS-QN 271 (357)
T ss_dssp CEEECCTTSSSCBCBCC---CTTCCSCEEEEEECTTSTTEEEEEESS------SCEEEEESSCGGGCEEECC---CS-SC
T ss_pred ceEEEECCCCceeeeee---eccccccccchhhhhcccceEEEeecc------cceeEEECCCCcEeEEEec---cc-ee
Confidence 47888887765332211 1111111222222 45677888754 3488899876542111110 11 11
Q ss_pred ceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEE
Q 008260 350 DHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVI 428 (572)
Q Consensus 350 ~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l 428 (572)
-.+++.. .++.+++.|+.+ ..|.+||.++.+..... .... .-.++.+.. . ++.+
T Consensus 272 v~~l~~sp~~~~~lasgs~D-----~~i~iwd~~~~~~~~~~-----~H~~-~V~~vafsP------------~--d~~~ 326 (357)
T 4g56_B 272 ITGLAYSYHSSPFLASISED-----CTVAVLDADFSEVFRDL-----SHRD-FVTGVAWSP------------L--DHSK 326 (357)
T ss_dssp EEEEEECSSSSCCEEEEETT-----SCEEEECTTSCEEEEEC-----CCSS-CEEEEEECS------------S--STTE
T ss_pred EEEEEEcCCCCCEEEEEeCC-----CEEEEEECCCCcEeEEC-----CCCC-CEEEEEEeC------------C--CCCE
Confidence 1222332 233567777754 45889999887654432 1111 112222210 0 1257
Q ss_pred EEEcCCCCCccCcEEEEeCCCC
Q 008260 429 VAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 429 ~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
++-||.++. |.++|+.+.
T Consensus 327 l~s~s~Dg~----v~iW~~~~~ 344 (357)
T 4g56_B 327 FTTVGWDHK----VLHHHLPSE 344 (357)
T ss_dssp EEEEETTSC----EEEEECC--
T ss_pred EEEEcCCCe----EEEEECCCC
Confidence 788888765 778886543
No 83
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.44 E-value=2 Score=41.77 Aligned_cols=194 Identities=5% Similarity=0.028 Sum_probs=95.1
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcE-EEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeE
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAW-SKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W-~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v 274 (572)
+.||+.+.. .+.++++|+.+.+. ....... ..++.+.+...-+..|| .+... .....+
T Consensus 52 ~~l~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~-~~~~~---~~~~~i 110 (331)
T 3u4y_A 52 SNVVVTSDF-----CQTLVQIETQLEPPKVVAIQEG------------QSSMADVDITPDDQFAV-TVTGL---NHPFNM 110 (331)
T ss_dssp CEEEEEEST-----TCEEEEEECSSSSCEEEEEEEC------------SSCCCCEEECTTSSEEE-ECCCS---SSSCEE
T ss_pred CEEEEEeCC-----CCeEEEEECCCCceeEEecccC------------CCCccceEECCCCCEEE-EecCC---CCcccE
Confidence 457777652 13799999988775 2222111 12221112111244566 33221 112379
Q ss_pred EEEECCCCceEEeccCCCCCCCCcceEEEEE-C-CEEEEEecCCCCCCCCCc-eEEEECCCCc-EEEeeCCCCCCCcccc
Q 008260 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-G-TSLVIFGGEDAKRSLLND-LHILDLETMT-WDEIDAVGVPPSPRSD 350 (572)
Q Consensus 275 ~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~-~~iyv~GG~~~~~~~~~~-v~~yd~~t~~-W~~v~~~g~~p~~R~~ 350 (572)
.+||+.+.+....-..+ ...+.++.. + +.||+.+.. .+. +.+|++.... ....... ..+....-
T Consensus 111 ~v~d~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~~~~~~------~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~ 178 (331)
T 3u4y_A 111 QSYSFLKNKFISTIPIP-----YDAVGIAISPNGNGLILIDRS------SANTVRRFKIDADGVLFDTGQE-FISGGTRP 178 (331)
T ss_dssp EEEETTTTEEEEEEECC-----TTEEEEEECTTSSCEEEEEET------TTTEEEEEEECTTCCEEEEEEE-EECSSSSE
T ss_pred EEEECCCCCeEEEEECC-----CCccceEECCCCCEEEEEecC------CCceEEEEEECCCCcEeecCCc-cccCCCCc
Confidence 99999888765543221 122444444 3 357777553 234 6777765432 1111000 00111222
Q ss_pred eEEEEEcCC-EEEEEeCCCCCcCcCcEEEEECCCCcE----EeeccCCCCCCCccccEEEEECCccccceeeeeeccCCC
Q 008260 351 HAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEW----SRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGE 425 (572)
Q Consensus 351 ~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~t~~W----~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~ 425 (572)
...++..++ .+|+.+..+ +.+.+||+.+.+. ..++ ....-..++...+ .
T Consensus 179 ~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~~~~~~~~~~------~~~~~~~~~~spd---------------g 232 (331)
T 3u4y_A 179 FNITFTPDGNFAFVANLIG-----NSIGILETQNPENITLLNAVG------TNNLPGTIVVSRD---------------G 232 (331)
T ss_dssp EEEEECTTSSEEEEEETTT-----TEEEEEECSSTTSCEEEEEEE------CSSCCCCEEECTT---------------S
T ss_pred cceEECCCCCEEEEEeCCC-----CeEEEEECCCCcccceeeecc------CCCCCceEEECCC---------------C
Confidence 344444444 577776432 5699999987664 2222 1111123344333 2
Q ss_pred CEEEEEcCCCCCccCcEEEEeCCCCcc
Q 008260 426 DVIVAFGGYNGRYNNEVHVLKPSHKST 452 (572)
Q Consensus 426 ~~l~v~GG~~~~~~~dv~~yd~~~~~~ 452 (572)
..||+.... .+.++++|+.+...
T Consensus 233 ~~l~v~~~~----~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 233 STVYVLTES----TVDVFNFNQLSGTL 255 (331)
T ss_dssp SEEEEECSS----EEEEEEEETTTTEE
T ss_pred CEEEEEEcC----CCEEEEEECCCCce
Confidence 356665442 24588999887644
No 84
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.40 E-value=2.3 Score=41.69 Aligned_cols=163 Identities=11% Similarity=0.100 Sum_probs=78.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCC-EEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~-~iyv~GG~~~~~~~~~~ 273 (572)
+++||+.+... ....+++||+.+.+++.+..... ......+.+..-++ .||+.+..+ ..
T Consensus 50 dg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~~~~-----------~~~~p~~~a~spdg~~l~~~~~~~------~~ 109 (347)
T 3hfq_A 50 KDCLYSVDKED---DEGGIAAWQIDGQTAHKLNTVVA-----------PGTPPAYVAVDEARQLVYSANYHK------GT 109 (347)
T ss_dssp TCEEEEEEEET---TEEEEEEEEEETTEEEEEEEEEE-----------ESCCCSEEEEETTTTEEEEEETTT------TE
T ss_pred CCeEEEEEecC---CCceEEEEEecCCcEEEeeeeec-----------CCCCCEEEEECCCCCEEEEEeCCC------CE
Confidence 56777775411 12469999998888877654320 01111222222344 566654322 25
Q ss_pred EEEEECC-CCceEEec---cCCCCCCCCc----ceEEEEE-CCEEEEEecCCCCCCCCCceEEEECC-CCcEEEeeCCCC
Q 008260 274 VKVFDLQ-TCSWSTLK---TYGKPPVSRG----GQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLE-TMTWDEIDAVGV 343 (572)
Q Consensus 274 v~~yd~~-~~~W~~~~---~~g~~p~~R~----~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~v~~~g~ 343 (572)
+.+||+. ..+...+. ..+..|.+|. .+.+++. ++++|+.+.. .+.+.+||+. +.+...+....
T Consensus 110 v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~------~~~v~~~~~~~~g~~~~~~~~~- 182 (347)
T 3hfq_A 110 AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG------SDKVYVYNVSDAGQLSEQSVLT- 182 (347)
T ss_dssp EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT------TTEEEEEEECTTSCEEEEEEEE-
T ss_pred EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC------CCEEEEEEECCCCcEEEeeeEE-
Confidence 7778774 33333332 2222222221 2233333 4567776542 2468899987 55555443210
Q ss_pred CCCcccceEEEEEcC-CEEEEEeCCCCCcCcCcEEEE--ECCCCcEEee
Q 008260 344 PPSPRSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVL--DLQTMEWSRP 389 (572)
Q Consensus 344 ~p~~R~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~y--d~~t~~W~~v 389 (572)
.+....-..+++..+ +.||+.+..+ +.+.+| +..+.+++.+
T Consensus 183 ~~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 183 MEAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTTEEEEE
T ss_pred cCCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCceEEe
Confidence 011111122344444 4577765433 344455 4445676554
No 85
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=94.40 E-value=1.6 Score=43.54 Aligned_cols=150 Identities=11% Similarity=0.091 Sum_probs=75.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe---CCEEEEEeccCCCCCcc
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW---ENKLLSIAGHTKDPSEI 271 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~---~~~iyv~GG~~~~~~~~ 271 (572)
+++.++.|+.+ ..+.++|+.+++-.. ... .....-..+.+ +..+++.|+.+.
T Consensus 138 dg~~l~sgs~d-----~~i~iwd~~~~~~~~--~~~-------------~h~~~V~~~~~~~~~~~~l~s~s~D~----- 192 (344)
T 4gqb_B 138 SGTQAVSGSKD-----ICIKVWDLAQQVVLS--SYR-------------AHAAQVTCVAASPHKDSVFLSCSEDN----- 192 (344)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEE--EEC-------------CCSSCEEEEEECSSCTTEEEEEETTS-----
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEE--EEc-------------CcCCceEEEEecCCCCCceeeecccc-----
Confidence 46667777632 258889988765322 221 00111112222 345777787764
Q ss_pred eeEEEEECCCCceEEeccCCCCCCCCcce-EEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcE-EEeeCCCCCCCc
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQ-SVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTW-DEIDAVGVPPSP 347 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~~R~~~-~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~v~~~g~~p~~ 347 (572)
.|.+||+.+.+-...-. ........ +++.. ++++++.|+.+ ..+.+||+.+.+- ..+... .
T Consensus 193 -~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~l~sg~~d------g~v~~wd~~~~~~~~~~~~h-----~ 257 (344)
T 4gqb_B 193 -RILLWDTRCPKPASQIG---CSAPGYLPTSLAWHPQQSEVFVFGDEN------GTVSLVDTKSTSCVLSSAVH-----S 257 (344)
T ss_dssp -CEEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEEETT------SEEEEEESCC--CCEEEECC-----S
T ss_pred -ccccccccccceeeeee---cceeeccceeeeecCCCCcceEEeccC------CcEEEEECCCCcEEEEEcCC-----C
Confidence 48899988765433211 11111111 22222 45688888754 3488889876542 112111 1
Q ss_pred ccceEEEEEcC-CEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 348 RSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 348 R~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
..-.+++...+ ..+++.|+.+ ..|.++|..+.+-...
T Consensus 258 ~~v~~v~fsp~g~~~lasgs~D-----~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 258 QCVTGLVFSPHSVPFLASLSED-----CSLAVLDSSLSELFRS 295 (344)
T ss_dssp SCEEEEEECSSSSCCEEEEETT-----SCEEEECTTCCEEEEE
T ss_pred CCEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCcEEEE
Confidence 11122333333 3467777755 4588899888765443
No 86
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=94.36 E-value=2.7 Score=41.43 Aligned_cols=189 Identities=8% Similarity=0.055 Sum_probs=94.6
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
++++++.||.+ ..+.++|..+..-...-.. .......+.+ ++.+++.||.+.
T Consensus 66 d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~---------------~~~~v~~~~~s~~~~~l~s~~~d~------ 119 (340)
T 1got_B 66 DSRLLLSASQD-----GKLIIWDSYTTNKVHAIPL---------------RSSWVMTCAYAPSGNYVACGGLDN------ 119 (340)
T ss_dssp TSSEEEEEETT-----TEEEEEETTTCCEEEEEEC---------------SSSCEEEEEECTTSSEEEEEETTC------
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCCcceEeec---------------CCccEEEEEECCCCCEEEEEeCCC------
Confidence 35566666632 2578888777653322111 1111122222 567777787653
Q ss_pred eEEEEECCCCc--eEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 273 QVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 273 ~v~~yd~~~~~--W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
.+.+||+.+.. ....... . .....-.++... ++. ++.|+.+ ..+.+||+.+.+-...-.. ....
T Consensus 120 ~v~iw~~~~~~~~~~~~~~~-~-~h~~~v~~~~~~~~~~-l~s~s~d------~~i~~wd~~~~~~~~~~~~----h~~~ 186 (340)
T 1got_B 120 ICSIYNLKTREGNVRVSREL-A-GHTGYLSCCRFLDDNQ-IVTSSGD------TTCALWDIETGQQTTTFTG----HTGD 186 (340)
T ss_dssp EEEEEETTTCSBSCEEEEEE-E-CCSSCEEEEEEEETTE-EEEEETT------SCEEEEETTTTEEEEEECC----CSSC
T ss_pred eEEEEECccCCCcceeEEEe-c-CCCccEEEEEECCCCc-EEEEECC------CcEEEEECCCCcEEEEEcC----CCCc
Confidence 57888877642 1111110 0 001111122222 455 4555543 3488999887764332211 1112
Q ss_pred ceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEE
Q 008260 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIV 429 (572)
Q Consensus 350 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~ 429 (572)
-.+++...++.+++.|+.+ ..+.++|+.+..-...-. .....-.+++... .+.++
T Consensus 187 v~~~~~~~~~~~l~sg~~d-----~~v~~wd~~~~~~~~~~~----~h~~~v~~v~~~p----------------~~~~l 241 (340)
T 1got_B 187 VMSLSLAPDTRLFVSGACD-----ASAKLWDVREGMCRQTFT----GHESDINAICFFP----------------NGNAF 241 (340)
T ss_dssp EEEEEECTTSSEEEEEETT-----SCEEEEETTTCSEEEEEC----CCSSCEEEEEECT----------------TSSEE
T ss_pred eEEEEECCCCCEEEEEeCC-----CcEEEEECCCCeeEEEEc----CCcCCEEEEEEcC----------------CCCEE
Confidence 2344444555688888865 468889988765433210 0111111222222 22577
Q ss_pred EEcCCCCCccCcEEEEeCCCCc
Q 008260 430 AFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 430 v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
+.|+.++. +.+||+.+..
T Consensus 242 ~s~s~d~~----v~iwd~~~~~ 259 (340)
T 1got_B 242 ATGSDDAT----CRLFDLRADQ 259 (340)
T ss_dssp EEEETTSC----EEEEETTTTE
T ss_pred EEEcCCCc----EEEEECCCCc
Confidence 88887754 7888887653
No 87
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=94.33 E-value=3 Score=40.29 Aligned_cols=159 Identities=8% Similarity=-0.038 Sum_probs=81.7
Q ss_pred cceeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEec
Q 008260 187 YEHGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAG 263 (572)
Q Consensus 187 ~~~s~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG 263 (572)
.+-+.+.. ++.||++.-. ...+++||+.+........ ..+.. +++. -++++|+..+
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~---------------~~~~~-~i~~~~dG~l~v~~~ 72 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIP-----AKKVCRWDSFTKQVQRVTM---------------DAPVS-SVALRQSGGYVATIG 72 (297)
T ss_dssp BEEEEEEETTTTEEEEEETT-----TTEEEEEETTTCCEEEEEC---------------SSCEE-EEEEBTTSSEEEEET
T ss_pred cccCCeEECCCCEEEEEECC-----CCEEEEEECCCCcEEEEeC---------------CCceE-EEEECCCCCEEEEEC
Confidence 33344444 4788887642 2468999999876644321 11111 2222 2566666531
Q ss_pred cCCCCCcceeEEEEECCCCceEEeccCCC-CCCCCcceEEEEE-CCEEEEEecCCCC-----CCCCCceEEEECCCCcEE
Q 008260 264 HTKDPSEIIQVKVFDLQTCSWSTLKTYGK-PPVSRGGQSVTLV-GTSLVIFGGEDAK-----RSLLNDLHILDLETMTWD 336 (572)
Q Consensus 264 ~~~~~~~~~~v~~yd~~~~~W~~~~~~g~-~p~~R~~~~~~~~-~~~iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~ 336 (572)
..+.+||+.+.+++.+..... .+..|.. ..++. +++||+-.-.... ......++++|+.. +..
T Consensus 73 --------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~-di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~ 142 (297)
T 3g4e_A 73 --------TKFCALNWKEQSAVVLATVDNDKKNNRFN-DGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVK 142 (297)
T ss_dssp --------TEEEEEETTTTEEEEEEECCTTCSSEEEE-EEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEE
T ss_pred --------CeEEEEECCCCcEEEEEecCCCCCCCCCC-CEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEE
Confidence 368999999998887753211 1222222 22222 5677764211110 01134688888753 333
Q ss_pred EeeCCCCCCCcccceEEEEEcC-CEEEEEeCCCCCcCcCcEEEEEC--CCCcE
Q 008260 337 EIDAVGVPPSPRSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDL--QTMEW 386 (572)
Q Consensus 337 ~v~~~g~~p~~R~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~--~t~~W 386 (572)
.+... ...-.+.++..+ +.||+..... +.|++||. .+...
T Consensus 143 ~~~~~-----~~~pngi~~spdg~~lyv~~~~~-----~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 143 KYFDQ-----VDISNGLDWSLDHKIFYYIDSLS-----YSVDAFDYDLQTGQI 185 (297)
T ss_dssp EEEEE-----ESBEEEEEECTTSCEEEEEEGGG-----TEEEEEEECTTTCCE
T ss_pred EEeec-----cccccceEEcCCCCEEEEecCCC-----CcEEEEeccCCCCcc
Confidence 33211 111234444433 4688876432 56888875 45544
No 88
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.31 E-value=7.8 Score=42.70 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=71.9
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--cEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCC
Q 008260 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (572)
Q Consensus 189 ~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 266 (572)
.+-++.++.||+... .+.++.+|..+. .|+.-....... ...........+.+..+++||+...
T Consensus 64 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~v~v~~~--- 129 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHR-----AGEACCDAVNRGVAVWKGKVYVGVL--- 129 (689)
T ss_dssp CCCEEETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGG-----GGGCTTCSCCCCCEEETTEEEEECT---
T ss_pred ecCEEECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccc-----cccccccCCCCccEEECCEEEEEcc---
Confidence 445677999999765 246999999875 487543211000 0000000112234567888888642
Q ss_pred CCCcceeEEEEECCCCc--eEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCc--EEEe
Q 008260 267 DPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEI 338 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~--W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~v 338 (572)
...+..+|..+.+ |+.-.............+.++.++.+|+-.+.. .......++.||..|.+ |+.-
T Consensus 130 ----dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~-~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 ----DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGA-EFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTTCCEEEEEE
T ss_pred ----CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCC-ccCCCCEEEEEECCCCcEEEEec
Confidence 1368999988764 876542011111122223455688887733221 11124579999998765 8764
No 89
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=94.31 E-value=3.5 Score=45.11 Aligned_cols=155 Identities=13% Similarity=0.081 Sum_probs=80.4
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcceeEEEEECCCC-ceEEe
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTC-SWSTL 287 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~ 287 (572)
..++++|+.+.+-..+.... ........+.+ +++.++++..+.. .....++.+|+.+. ....+
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~~~~~~ 300 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGE-------------PKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGRFVRTL 300 (706)
T ss_dssp EEEEEEETTTTEEEECCCCS-------------CTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCCEEEEE
T ss_pred eEEEEEECCCCceEeeccCC-------------CCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCceeeEE
Confidence 57999999887765543210 11111122222 5554455444332 34568999999988 67666
Q ss_pred ccCCCCCCCC-cceEEEEE---CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceE-EEEEcC-CEE
Q 008260 288 KTYGKPPVSR-GGQSVTLV---GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA-AAVHAE-RYL 361 (572)
Q Consensus 288 ~~~g~~p~~R-~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~-~~~~~~-~~l 361 (572)
..... .... ....++.. ++++++.+..++ ...+|.+|........+... .. .... .+...+ +.|
T Consensus 301 ~~~~~-~~~~~~~~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~---~~--~v~~~~~~spdg~~l 370 (706)
T 2z3z_A 301 FVETD-KHYVEPLHPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKG---EW--EVTNFAGFDPKGTRL 370 (706)
T ss_dssp EEEEC-SSCCCCCSCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCS---SS--CEEEEEEECTTSSEE
T ss_pred EEccC-CCeECccCCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCC---Ce--EEEeeeEEcCCCCEE
Confidence 42111 1000 01122222 567666555432 35688888777777666421 11 1112 233333 445
Q ss_pred EEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 362 LIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 362 yv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
|+.+.. .......+|.+|+.+...+.+.
T Consensus 371 ~~~~~~-~~~~~~~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 371 YFESTE-ASPLERHFYCIDIKGGKTKDLT 398 (706)
T ss_dssp EEEESS-SCTTCBEEEEEETTCCCCEESC
T ss_pred EEEecC-CCCceEEEEEEEcCCCCceecc
Confidence 555543 2222357999999887766553
No 90
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.28 E-value=5.5 Score=40.77 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=57.7
Q ss_pred CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 306 GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 306 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
++.+++.|+.+ ..+.+||+.+.+-...-.. ....-.+++...++..++.|+.+ ..+.+||+.+.+
T Consensus 279 ~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~ 343 (464)
T 3v7d_B 279 HGNIVVSGSYD------NTLIVWDVAQMKCLYILSG----HTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGE 343 (464)
T ss_dssp ETTEEEEEETT------SCEEEEETTTTEEEEEECC----CSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTE
T ss_pred CCCEEEEEeCC------CeEEEEECCCCcEEEEecC----CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Confidence 44566667653 3488999887654332211 11222344444454577777754 468999998775
Q ss_pred EEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 386 WSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 386 W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
-...- ........++.+.+ ..++.|+.++. +.+||+.+.
T Consensus 344 ~~~~~-----~~h~~~v~~~~~~~-----------------~~l~s~s~dg~----v~vwd~~~~ 382 (464)
T 3v7d_B 344 LMYTL-----QGHTALVGLLRLSD-----------------KFLVSAAADGS----IRGWDANDY 382 (464)
T ss_dssp EEEEE-----CCCSSCEEEEEECS-----------------SEEEEEETTSE----EEEEETTTC
T ss_pred EEEEE-----eCCCCcEEEEEEcC-----------------CEEEEEeCCCc----EEEEECCCC
Confidence 43321 11111122333333 46777776654 888998765
No 91
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.27 E-value=4.9 Score=41.14 Aligned_cols=147 Identities=11% Similarity=0.093 Sum_probs=78.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~ 273 (572)
++.+++.|+.+ ..+.+||+.+.+-... .. .....-.+++. -++..++.|+.++ .
T Consensus 279 ~~~~l~~~~~d-----~~i~vwd~~~~~~~~~--~~------------~~~~~v~~~~~~~~~~~l~sg~~dg------~ 333 (464)
T 3v7d_B 279 HGNIVVSGSYD-----NTLIVWDVAQMKCLYI--LS------------GHTDRIYSTIYDHERKRCISASMDT------T 333 (464)
T ss_dssp ETTEEEEEETT-----SCEEEEETTTTEEEEE--EC------------CCSSCEEEEEEETTTTEEEEEETTS------C
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEE--ec------------CCCCCEEEEEEcCCCCEEEEEeCCC------c
Confidence 34455566532 3588999887654322 11 01111122222 2566777777654 4
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEE
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAA 353 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~ 353 (572)
+.+||+.+.+-...- ........+..+.+..++.|+.+ ..+.+||+.+..-...... . ......
T Consensus 334 i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~----~-~~~~~~ 397 (464)
T 3v7d_B 334 IRIWDLENGELMYTL-----QGHTALVGLLRLSDKFLVSAAAD------GSIRGWDANDYSRKFSYHH----T-NLSAIT 397 (464)
T ss_dssp EEEEETTTTEEEEEE-----CCCSSCEEEEEECSSEEEEEETT------SEEEEEETTTCCEEEEEEC----T-TCCCEE
T ss_pred EEEEECCCCcEEEEE-----eCCCCcEEEEEEcCCEEEEEeCC------CcEEEEECCCCceeeeecC----C-CCccEE
Confidence 889998876533221 11112223344456677777754 3488999887653322211 1 112233
Q ss_pred EEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 354 AVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 354 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
+...++.+++.|+ + ..+.+||..+.+-..
T Consensus 398 ~~~~~~~~l~~~~-d-----g~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 398 TFYVSDNILVSGS-E-----NQFNIYNLRSGKLVH 426 (464)
T ss_dssp EEEECSSEEEEEE-T-----TEEEEEETTTCCEEE
T ss_pred EEEeCCCEEEEec-C-----CeEEEEECCCCcEEe
Confidence 3333444777776 2 469999999887654
No 92
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=94.27 E-value=2.5 Score=39.68 Aligned_cols=153 Identities=11% Similarity=-0.006 Sum_probs=83.2
Q ss_pred eeEEEE-CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCC
Q 008260 189 HGAAVV-QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTK 266 (572)
Q Consensus 189 ~s~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~ 266 (572)
++++.. +++||+... .+.+++||+.+.....+... ....-+.++.. +++||+.....
T Consensus 70 ~~i~~~~~g~l~v~~~------~~~i~~~d~~~~~~~~~~~~--------------~~~~p~~i~~~~~g~l~v~~~~~- 128 (270)
T 1rwi_B 70 QGLAVDGAGTVYVTDF------NNRVVTLAAGSNNQTVLPFD--------------GLNYPEGLAVDTQGAVYVADRGN- 128 (270)
T ss_dssp CCEEECTTCCEEEEET------TTEEEEECTTCSCCEECCCC--------------SCSSEEEEEECTTCCEEEEEGGG-
T ss_pred ceeEECCCCCEEEEcC------CCEEEEEeCCCceEeeeecC--------------CcCCCcceEECCCCCEEEEECCC-
Confidence 344444 467888754 13689999887654433211 10112333333 67888875432
Q ss_pred CCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCC
Q 008260 267 DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPP 345 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p 345 (572)
..+.+||..+......... .. ..-.++++. +++||+.... .+.+.+||+.+..-...... .
T Consensus 129 -----~~i~~~~~~~~~~~~~~~~-~~---~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~---~ 190 (270)
T 1rwi_B 129 -----NRVVKLAAGSKTQTVLPFT-GL---NDPDGVAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPFT---D 190 (270)
T ss_dssp -----TEEEEECTTCCSCEECCCC-SC---CSCCCEEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCCS---S
T ss_pred -----CEEEEEECCCceeEeeccc-cC---CCceeEEEeCCCCEEEEECC------CCEEEEEecCCCceEeeccc---C
Confidence 3588888766554433211 11 112334444 5678887542 34689999887664433211 1
Q ss_pred CcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcE
Q 008260 346 SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (572)
Q Consensus 346 ~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W 386 (572)
. ..-.+.++..++.||+....+ +.+.+||+....-
T Consensus 191 ~-~~p~~i~~d~~g~l~v~~~~~-----~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 191 I-TAPWGIAVDEAGTVYVTEHNT-----NQVVKLLAGSTTS 225 (270)
T ss_dssp C-CSEEEEEECTTCCEEEEETTT-----SCEEEECTTCSCC
T ss_pred C-CCceEEEECCCCCEEEEECCC-----CcEEEEcCCCCcc
Confidence 1 222344454555688876432 4689999876543
No 93
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.24 E-value=2.7 Score=40.62 Aligned_cols=153 Identities=10% Similarity=0.047 Sum_probs=72.9
Q ss_pred CEEEEEccCCCCcccCcEEEEEcC--CCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CC-EEEEEeccCCCCCcc
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLR--SWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-EN-KLLSIAGHTKDPSEI 271 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~-~iyv~GG~~~~~~~~ 271 (572)
+.||+.+. .. ..+.+|++. +.++..+.... ....-..++.. ++ .||+.+..+
T Consensus 50 ~~l~~~~~-~~----~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~dg~~l~~~~~~~------ 105 (343)
T 1ri6_A 50 RYLYVGVR-PE----FRVLAYRIAPDDGALTFAAESA-------------LPGSLTHISTDHQGQFVFVGSYNA------ 105 (343)
T ss_dssp SEEEEEET-TT----TEEEEEEECTTTCCEEEEEEEE-------------CSSCCSEEEECTTSSEEEEEETTT------
T ss_pred CEEEEeec-CC----CeEEEEEecCCCCceeeccccc-------------cCCCCcEEEEcCCCCEEEEEecCC------
Confidence 45665544 21 467777776 77887765543 11111222222 44 455554322
Q ss_pred eeEEEEECCCC-ceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCC-CcEEEee--CCCCCC
Q 008260 272 IQVKVFDLQTC-SWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET-MTWDEID--AVGVPP 345 (572)
Q Consensus 272 ~~v~~yd~~~~-~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t-~~W~~v~--~~g~~p 345 (572)
..+.+||+... ....+... +....-+.++.. ++.||+.+.. .+.+.+||+.+ .+...+. ... .+
T Consensus 106 ~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~~-~~ 175 (343)
T 1ri6_A 106 GNVSVTRLEDGLPVGVVDVV---EGLDGCHSANISPDNRTLWVPALK------QDRICLFTVSDDGHLVAQDPAEVT-TV 175 (343)
T ss_dssp TEEEEEEEETTEEEEEEEEE---CCCTTBCCCEECTTSSEEEEEEGG------GTEEEEEEECTTSCEEEEEEEEEE-CS
T ss_pred CeEEEEECCCCccccccccc---cCCCCceEEEECCCCCEEEEecCC------CCEEEEEEecCCCceeeecccccc-cC
Confidence 25778877322 22222211 111122333333 3467776532 24589999887 6665432 110 01
Q ss_pred CcccceEEEEEcC-CEEEEEeCCCCCcCcCcEEEEECC--CCcEE
Q 008260 346 SPRSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQ--TMEWS 387 (572)
Q Consensus 346 ~~R~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~ 387 (572)
....-..++...+ +.+|+.+..+ +.+.+||+. +.++.
T Consensus 176 ~~~~~~~~~~~pdg~~l~~~~~~~-----~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 176 EGAGPRHMVFHPNEQYAYCVNELN-----SSVDVWELKDPHGNIE 215 (343)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTT-----TEEEEEESSCTTSCCE
T ss_pred CCCCcceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCcEE
Confidence 1111123334434 4577766432 468888874 44443
No 94
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=94.23 E-value=2.2 Score=42.71 Aligned_cols=146 Identities=11% Similarity=0.033 Sum_probs=76.2
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
.+..++.|+.+. .+.+||+.+.+-...-. .....-.+++.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 216 ~~~~~~~~~~~g------~i~~~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~ 279 (425)
T 1r5m_A 216 DDDKFVIPGPKG------AIFVYQITEKTPTGKLI----GHHGPISVLEFNDTNKLLLSASDD------GTLRIWHGGNG 279 (425)
T ss_dssp ETTEEEEECGGG------CEEEEETTCSSCSEEEC----CCSSCEEEEEEETTTTEEEEEETT------SCEEEECSSSB
T ss_pred CCCEEEEEcCCC------eEEEEEcCCCceeeeec----cCCCceEEEEECCCCCEEEEEcCC------CEEEEEECCCC
Confidence 344466666543 58899988764322211 111112233333 45566777643 34888888765
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCcccc
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFL 413 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~i 413 (572)
+-...-. .....-.+++...++ +++.|+.+ ..+.+||+.+.+-...-. ........+.+..
T Consensus 280 ~~~~~~~----~~~~~i~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~s~---- 340 (425)
T 1r5m_A 280 NSQNCFY----GHSQSIVSASWVGDD-KVISCSMD-----GSVRLWSLKQNTLLALSI-----VDGVPIFAGRISQ---- 340 (425)
T ss_dssp SCSEEEC----CCSSCEEEEEEETTT-EEEEEETT-----SEEEEEETTTTEEEEEEE-----CTTCCEEEEEECT----
T ss_pred ccceEec----CCCccEEEEEECCCC-EEEEEeCC-----CcEEEEECCCCcEeEecc-----cCCccEEEEEEcC----
Confidence 4322211 112223445555666 77777654 468999998766443311 1111122222221
Q ss_pred ceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 414 GLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 414 G~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
.+.+++.|+.++ .+.+||..+.
T Consensus 341 -----------~~~~l~~~~~dg----~i~i~~~~~~ 362 (425)
T 1r5m_A 341 -----------DGQKYAVAFMDG----QVNVYDLKKL 362 (425)
T ss_dssp -----------TSSEEEEEETTS----CEEEEECHHH
T ss_pred -----------CCCEEEEEECCC----eEEEEECCCC
Confidence 225777787664 4888887543
No 95
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=94.18 E-value=1.8 Score=43.19 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=56.8
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
+++.++.|+.+. .|.++|+.+.+-...-. + ....-.+++.. +..+++.|+.++ .+.++|+.+
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~~-~---h~~~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~~ 201 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSYR-A---HAAQVTCVAASPHKDSVFLSCSEDN------RILLWDTRC 201 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEEC-C---CSSCEEEEEECSSCTTEEEEEETTS------CEEEEETTS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEc-C---cCCceEEEEecCCCCCceeeecccc------ccccccccc
Confidence 677778887764 48899988765332211 0 11111122222 335777887643 488899887
Q ss_pred CcEEEeeCCCCCCCcccce-EEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 333 MTWDEIDAVGVPPSPRSDH-AAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 333 ~~W~~v~~~g~~p~~R~~~-~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
.+-...-.. ....... +++.. .++.+++.|+.+ ..|.+||+.+.+
T Consensus 202 ~~~~~~~~~---~~~~~~~~~~~~~p~~~~~l~sg~~d-----g~v~~wd~~~~~ 248 (344)
T 4gqb_B 202 PKPASQIGC---SAPGYLPTSLAWHPQQSEVFVFGDEN-----GTVSLVDTKSTS 248 (344)
T ss_dssp SSCEEECC-------CCCEEEEEECSSCTTEEEEEETT-----SEEEEEESCC--
T ss_pred cceeeeeec---ceeeccceeeeecCCCCcceEEeccC-----CcEEEEECCCCc
Confidence 654332111 1111112 22222 244588888754 468889987654
No 96
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.07 E-value=3.3 Score=40.57 Aligned_cols=149 Identities=13% Similarity=0.078 Sum_probs=77.0
Q ss_pred cEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCC
Q 008260 212 DMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYG 291 (572)
Q Consensus 212 ~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g 291 (572)
.+|.+|..+.++..+.... ....-...+..-+++||+.+... ....+++||+.+.+++.+...
T Consensus 19 ~v~~~d~~tg~~~~~~~~~------------~~~~p~~~a~spdg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~~~- 81 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLA------------ATQNPTYLALSAKDCLYSVDKED----DEGGIAAWQIDGQTAHKLNTV- 81 (347)
T ss_dssp EEEEEETTTTEEEEEEEEE------------ECSCCCCEEECTTCEEEEEEEET----TEEEEEEEEEETTEEEEEEEE-
T ss_pred EEEEEcCCCCeEEEeeeee------------ccCCcceEEEccCCeEEEEEecC----CCceEEEEEecCCcEEEeeee-
Confidence 4777888888887754432 01111111222267777775431 135789999988877766431
Q ss_pred CCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECC-CCcEEEee---CCCCCCCcc----cceEEEEEcCCEE
Q 008260 292 KPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLE-TMTWDEID---AVGVPPSPR----SDHAAAVHAERYL 361 (572)
Q Consensus 292 ~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~v~---~~g~~p~~R----~~~~~~~~~~~~l 361 (572)
......-..+++. +..||+.+.. .+.+.+||+. +.....+. ..+..|.+| .-+++++..++.+
T Consensus 82 -~~~~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 82 -VAPGTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp -EEESCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE
T ss_pred -ecCCCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcE
Confidence 0011112233333 3457666532 2457788874 33333332 222222222 2344555555557
Q ss_pred EEEeCCCCCcCcCcEEEEECC-CCcEEee
Q 008260 362 LIFGGGSHAACFNDLHVLDLQ-TMEWSRP 389 (572)
Q Consensus 362 yv~GG~~~~~~~~~v~~yd~~-t~~W~~v 389 (572)
|+.+..+ +.+++||+. +.+...+
T Consensus 155 ~v~~~~~-----~~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 155 AVIDLGS-----DKVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp EEEETTT-----TEEEEEEECTTSCEEEE
T ss_pred EEEeCCC-----CEEEEEEECCCCcEEEe
Confidence 7765432 468889887 5555543
No 97
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=94.03 E-value=4.2 Score=38.47 Aligned_cols=150 Identities=6% Similarity=-0.051 Sum_probs=83.6
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~ 273 (572)
+++||+.... .+.+.+||+. ..+....... ....-++++. -++.+|+..... ..
T Consensus 25 ~g~l~v~~~~-----~~~v~~~d~~-~~~~~~~~~~-------------~~~~~~~i~~~~~g~l~v~~~~~------~~ 79 (299)
T 2z2n_A 25 KGKVWITQHK-----ANMISCINLD-GKITEYPLPT-------------PDAKVMCLTISSDGEVWFTENAA------NK 79 (299)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-CCEEEEECSS-------------TTCCEEEEEECTTSCEEEEETTT------TE
T ss_pred CCCEEEEecC-----CCcEEEEcCC-CCeEEecCCc-------------ccCceeeEEECCCCCEEEeCCCC------Ce
Confidence 4678876431 1368999988 7776554211 1112233333 267888875432 25
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceE
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~ 352 (572)
+.+||+. .+...+... .....-++++.. ++.||+.... .+.+++||+ +.+...+... .....-++
T Consensus 80 i~~~~~~-g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~---~~~~~~~~ 145 (299)
T 2z2n_A 80 IGRITKK-GIIKEYTLP---NPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELP---NKGSYPSF 145 (299)
T ss_dssp EEEECTT-SCEEEEECS---STTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECS---STTCCEEE
T ss_pred EEEECCC-CcEEEEeCC---CcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCC---CCCCCCce
Confidence 8889886 555555411 012223344444 5688886532 245889998 6666555322 11223344
Q ss_pred EEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 353 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
.+...++.+|+..... +.+++||+ +.+...+
T Consensus 146 i~~~~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~ 176 (299)
T 2z2n_A 146 ITLGSDNALWFTENQN-----NAIGRITE-SGDITEF 176 (299)
T ss_dssp EEECTTSCEEEEETTT-----TEEEEECT-TCCEEEE
T ss_pred EEEcCCCCEEEEeCCC-----CEEEEEcC-CCcEEEe
Confidence 4554556688865321 46899999 7777665
No 98
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=93.64 E-value=0.76 Score=51.41 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=80.4
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--C--CEEEEEeccCCCCCcc
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E--NKLLSIAGHTKDPSEI 271 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~--~~iyv~GG~~~~~~~~ 271 (572)
+.+++.|+.+ ..+.++|+.+++|..+.... ........+.+ + +.+++.|+.++
T Consensus 67 ~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~-------------~h~~~V~~v~~sp~~~~~~l~sgs~dg----- 123 (753)
T 3jro_A 67 GTILASCSYD-----GKVLIWKEENGRWSQIAVHA-------------VHSASVNSVQWAPHEYGPLLLVASSDG----- 123 (753)
T ss_dssp CSEEEEEETT-----SCEEEEEEETTEEEEEEEEC-------------CCSSCEEEEEECCGGGCSEEEEEETTS-----
T ss_pred CCEEEEEeCC-----CeEEEEECCCCccccccccc-------------CCCCCeEEEEECCCCCCCEEEEEeCCC-----
Confidence 5667777732 35889999999887776553 11222222333 3 67888887654
Q ss_pred eeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--------------CCEEEEEecCCCCCCCCCceEEEECCCC--cE
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--------------GTSLVIFGGEDAKRSLLNDLHILDLETM--TW 335 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--------------~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W 335 (572)
.|.+||..+..-.........+. .-.++... ++.+++.|+.++ .+.+||+.+. .+
T Consensus 124 -~I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg------~I~iwd~~~~~~~~ 194 (753)
T 3jro_A 124 -KVSVVEFKENGTTSPIIIDAHAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTY 194 (753)
T ss_dssp -EEEEEECCSSSCCCCEEEECCSS--CEEEEEECCCC---------CGGGCCEEEEETTS------CEEEEEEETTTTEE
T ss_pred -cEEEEEeecCCCcceeEeecCCC--ceEEEEecCcccccccccccCCCCCEEEEEECCC------eEEEEeccCCcccc
Confidence 58888887652211110000111 11122222 256777777643 3777776544 44
Q ss_pred EEeeCCCCCCCcccceEEEEEcC---CEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 336 DEIDAVGVPPSPRSDHAAAVHAE---RYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 336 ~~v~~~g~~p~~R~~~~~~~~~~---~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
..+.... .....-.+++...+ +.+++.||.+ ..+.+||+.+.
T Consensus 195 ~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~D-----g~I~iwd~~~~ 239 (753)
T 3jro_A 195 VLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQD-----RTCIIWTQDNE 239 (753)
T ss_dssp EEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESS-----SCEEEEEESSS
T ss_pred eeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecC-----CEEEEecCCCC
Confidence 4443321 11122233444445 5788888865 45788887764
No 99
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=93.61 E-value=4.7 Score=37.65 Aligned_cols=145 Identities=11% Similarity=-0.027 Sum_probs=79.7
Q ss_pred cCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCCCcceeEEEEECCC-CceEEe
Q 008260 210 LSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQVKVFDLQT-CSWSTL 287 (572)
Q Consensus 210 ~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~ 287 (572)
-..++++|+.+.+...+.... . .-.+++. -+++.+++++. ..++++|+.+ .+...+
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~--------------~-~v~~~~~spdg~~l~~~~~-------~~i~~~d~~~~~~~~~~ 78 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTP--------------E-LFEAPNWSPDGKYLLLNSE-------GLLYRLSLAGDPSPEKV 78 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEES--------------S-CCEEEEECTTSSEEEEEET-------TEEEEEESSSCCSCEEC
T ss_pred ceeEEEEeCCCCceeeeccCC--------------c-ceEeeEECCCCCEEEEEcC-------CeEEEEeCCCCCCceEe
Confidence 457999999998877654421 1 1112222 25666666542 2799999998 776666
Q ss_pred ccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcC-CEEEEEe
Q 008260 288 KTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAE-RYLLIFG 365 (572)
Q Consensus 288 ~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~-~~lyv~G 365 (572)
.. ......-..++.. +++.+++++.... ....++.+|..+..-..+... . . ........+ +.|++.+
T Consensus 79 ~~---~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~---~--~-~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 79 DT---GFATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKN---L--P-SYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp CC---TTCCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSS---S--S-EEEEEECTTSSEEEEEE
T ss_pred cc---ccccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecC---C--C-ccceEECCCCCEEEEEE
Confidence 42 1111122223332 4555556554332 246799999888776555432 1 1 233334434 4455455
Q ss_pred CCCCCcCcCcEEEEECCCCcEEeec
Q 008260 366 GGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 366 G~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
+.+.. ..+|.+|..+.....+.
T Consensus 148 ~~~~~---~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 148 IRDQV---FDIYSMDIDSGVETRLT 169 (297)
T ss_dssp EETTE---EEEEEEETTTCCEEECC
T ss_pred CCCCc---eEEEEEECCCCcceEcc
Confidence 43221 36888888887776653
No 100
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.59 E-value=1.2 Score=45.68 Aligned_cols=110 Identities=7% Similarity=0.064 Sum_probs=63.3
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
++.+++.|+.++ .|.+||..+.+-..+... ......-.+++.. ++.+++.|+.++ .|.++|+++
T Consensus 131 ~~~~lasGs~dg------~i~lWd~~~~~~~~~~~~--~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~~ 196 (435)
T 4e54_B 131 HPSTVAVGSKGG------DIMLWNFGIKDKPTFIKG--IGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFKG 196 (435)
T ss_dssp CTTCEEEEETTS------CEEEECSSCCSCCEEECC--CSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETTS
T ss_pred CCCEEEEEeCCC------EEEEEECCCCCceeEEEc--cCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeeccC
Confidence 456777888765 488888877654333211 1111122233332 456777777653 378889988
Q ss_pred CcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 333 MTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 333 ~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
.....+.... .......+.....++.+++.|+.+ ..|.++|+....
T Consensus 197 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~ 242 (435)
T 4e54_B 197 NILRVFASSD--TINIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKE 242 (435)
T ss_dssp CEEEEEECCS--SCSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCB
T ss_pred CceeEEeccC--CCCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcce
Confidence 7766655431 111222334445566688888765 468888887643
No 101
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=93.57 E-value=8.2 Score=41.50 Aligned_cols=128 Identities=15% Similarity=0.230 Sum_probs=71.5
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEc-CCC--cEEEeeecccccCCCCCCCCCCCCC---cceeEEEeCCEEEEEe
Q 008260 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDL-RSW--AWSKIQAKAVAESTESPSPALLTPC---AGHSLIPWENKLLSIA 262 (572)
Q Consensus 189 ~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~-~t~--~W~~~~~~~~~~~~~~~~~~~p~~R---~~hs~~~~~~~iyv~G 262 (572)
.+-++.++.||+.... .+.++.+|. .+. .|+.-...... ..+..+ ...+.+..+++||+..
T Consensus 56 ~~P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~v~~ 122 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDAS--------TKAVMCCDVVDRGLAYGAGQIVKKQ 122 (571)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGG--------GGGGCTTCSCCCCCEEETTEEEEEC
T ss_pred cccEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCcc--------ccccccccccccccEEECCEEEEEe
Confidence 4556779999998652 246999999 765 48764322100 000011 1223456788998874
Q ss_pred ccCCCCCcceeEEEEECCCC--ceEEeccCCCCCCC-CcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCC--cEEE
Q 008260 263 GHTKDPSEIIQVKVFDLQTC--SWSTLKTYGKPPVS-RGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDE 337 (572)
Q Consensus 263 G~~~~~~~~~~v~~yd~~~~--~W~~~~~~g~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~ 337 (572)
. ...++.+|..+. .|+.-.. ..+.. ....+-++.++.||+-.+... ......++.||+.+. .|+.
T Consensus 123 ~-------dg~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 123 A-------NGHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVAKDTVLMGCSGAE-LGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp T-------TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEEECBCGG-GTCCCEEEEEETTTCCEEEEE
T ss_pred C-------CCEEEEEECCCCCEEEEecCC--CCCccceeccCCEEECCEEEEEecCCc-cCCCCEEEEEECCCCcEEEEE
Confidence 3 136899998876 4875431 11111 111223456888876543211 112356999999865 4875
Q ss_pred ee
Q 008260 338 ID 339 (572)
Q Consensus 338 v~ 339 (572)
-.
T Consensus 193 ~~ 194 (571)
T 2ad6_A 193 FA 194 (571)
T ss_dssp ES
T ss_pred cc
Confidence 43
No 102
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=93.54 E-value=5.2 Score=37.91 Aligned_cols=162 Identities=11% Similarity=0.108 Sum_probs=87.0
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccC
Q 008260 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHT 265 (572)
Q Consensus 189 ~s~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~ 265 (572)
+++++. +++||+.+.. ....+.+||.....-..+... ....-+.++.. ++++|+.....
T Consensus 80 ~~i~~~~~~g~l~v~~~~----~~~~i~~~d~~g~~~~~~~~~--------------~~~~~~~i~~~~~g~l~v~~~~~ 141 (286)
T 1q7f_A 80 NRVAVVRNSGDIIVTERS----PTHQIQIYNQYGQFVRKFGAT--------------ILQHPRGVTVDNKGRIIVVECKV 141 (286)
T ss_dssp EEEEEETTTTEEEEEECG----GGCEEEEECTTSCEEEEECTT--------------TCSCEEEEEECTTSCEEEEETTT
T ss_pred eEEEEEcCCCeEEEEcCC----CCCEEEEECCCCcEEEEecCc--------------cCCCceEEEEeCCCCEEEEECCC
Confidence 444443 5789988631 124688999554433333210 11111333332 67888875432
Q ss_pred CCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCC
Q 008260 266 KDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP 344 (572)
Q Consensus 266 ~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~ 344 (572)
..+.+||+.......+...+.. ..-.+.++. +++||+.... .+.+.+||+.......+...+..
T Consensus 142 ------~~i~~~~~~g~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~g~~ 206 (286)
T 1q7f_A 142 ------MRVIIFDQNGNVLHKFGCSKHL---EFPNGVVVNDKQEIFISDNR------AHCVKVFNYEGQYLRQIGGEGIT 206 (286)
T ss_dssp ------TEEEEECTTSCEEEEEECTTTC---SSEEEEEECSSSEEEEEEGG------GTEEEEEETTCCEEEEESCTTTS
T ss_pred ------CEEEEEcCCCCEEEEeCCCCcc---CCcEEEEECCCCCEEEEECC------CCEEEEEcCCCCEEEEEccCCcc
Confidence 3688999876555554321111 112233333 5788887543 35699999876655555322111
Q ss_pred CCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 345 PSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 345 p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
..-.+.++..++.||+....+. ..|.+||+....-..+.
T Consensus 207 ---~~p~~i~~d~~G~l~v~~~~~~----~~i~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 207 ---NYPIGVGINSNGEILIADNHNN----FNLTIFTQDGQLISALE 245 (286)
T ss_dssp ---CSEEEEEECTTCCEEEEECSSS----CEEEEECTTSCEEEEEE
T ss_pred ---CCCcEEEECCCCCEEEEeCCCC----EEEEEECCCCCEEEEEc
Confidence 1223445545566888775431 26899998765544443
No 103
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=93.46 E-value=6.3 Score=38.66 Aligned_cols=148 Identities=15% Similarity=0.139 Sum_probs=77.8
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++. ++.|+.+. .+.+||+.+.+-...-. + ....-.+++.. ++.+++.|+.++ .+.+||+.+.
T Consensus 154 ~~~-l~s~s~d~------~i~~wd~~~~~~~~~~~-~---h~~~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~ 216 (340)
T 1got_B 154 DNQ-IVTSSGDT------TCALWDIETGQQTTTFT-G---HTGDVMSLSLAPDTRLFVSGACDA------SAKLWDVREG 216 (340)
T ss_dssp TTE-EEEEETTS------CEEEEETTTTEEEEEEC-C---CSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTC
T ss_pred CCc-EEEEECCC------cEEEEECCCCcEEEEEc-C---CCCceEEEEECCCCCEEEEEeCCC------cEEEEECCCC
Confidence 555 45555543 58899988876433221 0 11111223332 567788887643 4888998776
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCcccc
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFL 413 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~i 413 (572)
.-...-.. ....-.+.+...++.+++.|+.+ ..+.+||+.+.+-...-. .+........+.+..
T Consensus 217 ~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~---- 280 (340)
T 1got_B 217 MCRQTFTG----HESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQELMTYS---HDNIICGITSVSFSK---- 280 (340)
T ss_dssp SEEEEECC----CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEEC---CTTCCSCEEEEEECT----
T ss_pred eeEEEEcC----CcCCEEEEEEcCCCCEEEEEcCC-----CcEEEEECCCCcEEEEEc---cCCcccceEEEEECC----
Confidence 53322111 11122334444455578888765 468899988765332211 111111222333322
Q ss_pred ceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 414 GLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 414 G~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
.+.+++.|+.++ .|.+||..+.
T Consensus 281 -----------~g~~l~~g~~d~----~i~vwd~~~~ 302 (340)
T 1got_B 281 -----------SGRLLLAGYDDF----NCNVWDALKA 302 (340)
T ss_dssp -----------TSSEEEEEETTS----EEEEEETTTC
T ss_pred -----------CCCEEEEECCCC----eEEEEEcccC
Confidence 236788888664 4888887654
No 104
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=93.45 E-value=2.9 Score=40.84 Aligned_cols=152 Identities=8% Similarity=0.014 Sum_probs=74.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
++++++.|+.+ ..+.+||+.+.+-...-. ........+.+ ++..++.|+.+.
T Consensus 43 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~---------------~h~~~v~~~~~~~~~~~l~s~~~dg------ 96 (369)
T 3zwl_B 43 EGDLLFSCSKD-----SSASVWYSLNGERLGTLD---------------GHTGTIWSIDVDCFTKYCVTGSADY------ 96 (369)
T ss_dssp TSCEEEEEESS-----SCEEEEETTTCCEEEEEC---------------CCSSCEEEEEECTTSSEEEEEETTT------
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCchhhhhhh---------------hcCCcEEEEEEcCCCCEEEEEeCCC------
Confidence 45566666632 358889987765433211 11111222222 566777777643
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCc----EEEeeCCC-----
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMT----WDEIDAVG----- 342 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~----W~~v~~~g----- 342 (572)
.+.+||+.+.+-...-. ....-.++... ++..++.++.+... ....+.+||+.+.. +.......
T Consensus 97 ~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 97 SIKLWDVSNGQCVATWK-----SPVPVKRVEFSPCGNYFLAILDNVMK-NPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp EEEEEETTTCCEEEEEE-----CSSCEEEEEECTTSSEEEEEECCBTT-BCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred eEEEEECCCCcEEEEee-----cCCCeEEEEEccCCCEEEEecCCccC-CCCEEEEEEecCCccceeecccccceeeecc
Confidence 58899988776544431 11112223333 44555555543111 13467777765432 22211100
Q ss_pred CCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCC
Q 008260 343 VPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT 383 (572)
Q Consensus 343 ~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t 383 (572)
.........+++...++.+++.|+.+ ..+.+||+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~ 206 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHKD-----GKISKYDVSN 206 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEETT-----SEEEEEETTT
T ss_pred CCcCccceeEEEEcCCCCEEEEEcCC-----CEEEEEECCC
Confidence 00000122333333455577777654 4689999987
No 105
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=93.40 E-value=0.13 Score=48.37 Aligned_cols=69 Identities=22% Similarity=0.219 Sum_probs=52.4
Q ss_pred ccCCCChhhHHHHhhheeeeeeCCCCCCC--CCCCChh------------hhHhHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 008260 36 LTSKFSNDSALLLYALYQQATVGPCNVPK--PSSWSPV------------EQSKWKSWQGLGNMATTEAMRLFVKILEEE 101 (572)
Q Consensus 36 ~~~~~~~~~~l~lY~l~kQat~G~~~~~~--p~~~~~~------------~~~k~~aW~~~~~~~~~~a~~~yi~~~~~~ 101 (572)
+.-..+.|+.++|=||--||..||++... ++.++.. .+.=.+.|++++|||++||+.+|++++.++
T Consensus 43 G~~~~~~e~a~~LAal~~Qae~Gd~~~~~~~~~~~~l~~~lP~~~~~~~~~~~I~~~h~~~~g~s~~eA~~~yL~~~~~l 122 (222)
T 4f7g_A 43 GSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSL 122 (222)
T ss_dssp TSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCSSCSCGGGTSCGGGGGGCCHHHHHHHHHTTTTCCHHHHHHHHHHHHHTS
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCCchhcccCccchhhccCHHHHhhhhHHHHHHHHHhccCCCHHHHHHHHHHHHhhc
Confidence 34568899999999999999999997642 3322211 122246899999999999999999999876
Q ss_pred CCCc
Q 008260 102 DPGW 105 (572)
Q Consensus 102 ~p~~ 105 (572)
|.|
T Consensus 123 -~~y 125 (222)
T 4f7g_A 123 -KTY 125 (222)
T ss_dssp -TTT
T ss_pred -ccc
Confidence 444
No 106
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=93.34 E-value=5.5 Score=39.51 Aligned_cols=111 Identities=9% Similarity=0.106 Sum_probs=59.0
Q ss_pred EEEEEeccCCCCCcceeEEEEECCCCc------eEEeccCCCCCC---CCcceEEEEE-----CCEE-EEEecCCCCCCC
Q 008260 257 KLLSIAGHTKDPSEIIQVKVFDLQTCS------WSTLKTYGKPPV---SRGGQSVTLV-----GTSL-VIFGGEDAKRSL 321 (572)
Q Consensus 257 ~iyv~GG~~~~~~~~~~v~~yd~~~~~------W~~~~~~g~~p~---~R~~~~~~~~-----~~~i-yv~GG~~~~~~~ 321 (572)
.+++.|+.+. .|.+||..+.+ +..+.. .+. ...-.++... ++.. ++.|+.+
T Consensus 82 ~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d----- 147 (397)
T 1sq9_A 82 CLVATTSFSG------DLLFYRITREDETKKVIFEKLDL---LDSDMKKHSFWALKWGASNDRLLSHRLVATDVK----- 147 (397)
T ss_dssp EEEEEEETTS------CEEEEEEEECTTTCCEEEEEECC---SCTTGGGSCEEEEEEECCC----CEEEEEEETT-----
T ss_pred cEEEEEcCCC------CEEEEEccCCcccccccceeecc---cccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----
Confidence 7888887754 47888877766 666642 110 1222233333 3455 7777754
Q ss_pred CCceEEEECCC------Cc---EE---EeeC--CCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 322 LNDLHILDLET------MT---WD---EIDA--VGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 322 ~~~v~~yd~~t------~~---W~---~v~~--~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
..+.+||+.+ .+ |. .+.. .........-.+++...++ +++.|+.+ ..+.+||+.+.+..
T Consensus 148 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~ 220 (397)
T 1sq9_A 148 -GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQISELSTLRPL 220 (397)
T ss_dssp -SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEE
T ss_pred -CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEEEEECCCCcee
Confidence 3477777765 21 11 1110 0000112223345555667 77777754 46899999876544
Q ss_pred e
Q 008260 388 R 388 (572)
Q Consensus 388 ~ 388 (572)
.
T Consensus 221 ~ 221 (397)
T 1sq9_A 221 Y 221 (397)
T ss_dssp E
T ss_pred E
Confidence 3
No 107
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=93.23 E-value=3.2 Score=46.45 Aligned_cols=157 Identities=6% Similarity=0.018 Sum_probs=86.5
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCCCcceeEEEEECCCCceEEecc
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 289 (572)
+.+++||+.+++|........ ....+.... .++.. -++.||+-.. ..+.+||+.+.++ ....
T Consensus 471 ~Gl~~~~~~~~~~~~~~~~~~-------~~~~~~~~i-~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~ 533 (795)
T 4a2l_A 471 SALVRFNPEQRSFTTIEKEKD-------GTPVVSKQI-TTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKAS 533 (795)
T ss_dssp SCEEEEETTTTEEEECCBCTT-------CCBCCCCCE-EEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECC
T ss_pred CceeEEeCCCCeEEEcccccc-------ccccCCceE-EEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEec
Confidence 358999999999987653210 000011111 12222 2577887543 1488999988888 5431
Q ss_pred C---CCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEe
Q 008260 290 Y---GKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFG 365 (572)
Q Consensus 290 ~---g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~G 365 (572)
. ..++.. .-.+.+.. ++.|++-.. +.+++||+.+.+++........|... ..+.+.-.++.|++.+
T Consensus 534 ~~~~~~l~~~-~i~~i~~d~~g~lWigT~--------~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 534 ILPVSNVTKL-FTNCIYEASNGIIWVGTR--------EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLST 603 (795)
T ss_dssp CSCSCGGGGS-CEEEEEECTTSCEEEEES--------SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCC-eeEEEEECCCCCEEEEeC--------CCceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEc
Confidence 1 011111 11122222 467776431 24899999999988775432223222 2333333456688766
Q ss_pred CCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccc
Q 008260 366 GGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAG 401 (572)
Q Consensus 366 G~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~ 401 (572)
. +.+.+||+++.++.......-++...+.
T Consensus 604 ~-------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~ 632 (795)
T 4a2l_A 604 N-------RGISCFNPETEKFRNFTESDGLQSNQFN 632 (795)
T ss_dssp T-------TEEEEEETTTTEEEEECGGGTCSCSCEE
T ss_pred C-------CceEEEcCCCCcEEEcCCcCCCccccCc
Confidence 3 5689999999999876543225555443
No 108
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=93.13 E-value=4.3 Score=41.02 Aligned_cols=182 Identities=16% Similarity=0.253 Sum_probs=101.2
Q ss_pred ceEEecccCCCCCCCCcceeEEEECCEEEEEccCCCCcccCcEEE-EEcC------CCcEEEeeecccccCCCCCCCCCC
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHI-LDLR------SWAWSKIQAKAVAESTESPSPALL 243 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~-yd~~------t~~W~~~~~~~~~~~~~~~~~~~p 243 (572)
+.|+.... +..|....-|+.+.+++.=|++|=.++...-..+-. |-+. .-.-+.++..- .
T Consensus 270 spW~~t~L-~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey------------~ 336 (670)
T 3ju4_A 270 SPWRKTDL-GLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEY------------E 336 (670)
T ss_dssp SCCEEEEC-CSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGG------------C
T ss_pred CCceeccc-ccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhh------------c
Confidence 36765432 346677778999999988888874222222222221 1111 11223333221 1
Q ss_pred CCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCC----
Q 008260 244 TPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR---- 319 (572)
Q Consensus 244 ~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~---- 319 (572)
..-+..|+-.+++.||+.--.....+.-+.+.+-+.....|+.+... -..-......+.+++.||+||-.-..+
T Consensus 337 ~~AsEPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp--~nvHhtnlPFakvgD~l~mFgsERA~nEWE~ 414 (670)
T 3ju4_A 337 PDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFP--HNVHHTTLPFAKVGDDLIMFGSERAENEWEA 414 (670)
T ss_dssp TTEEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECT--TCCCSSCCCEEEETTEEEEEEECSSTTCSST
T ss_pred cccccchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhheecc--ccccccCCCcceeCCEEEEEecccccccccc
Confidence 22344555667999999864443335556788888888999999631 111222334677899999998642111
Q ss_pred -----CCC---CceEE--E-----ECCCCcEEEeeCC---CCCCCcccceEEEEEcCCEEE-EEeCC
Q 008260 320 -----SLL---NDLHI--L-----DLETMTWDEIDAV---GVPPSPRSDHAAAVHAERYLL-IFGGG 367 (572)
Q Consensus 320 -----~~~---~~v~~--y-----d~~t~~W~~v~~~---g~~p~~R~~~~~~~~~~~~ly-v~GG~ 367 (572)
.+. ...+. . ..+.-+|..+... |..-..-.+.+.+++.|+.|| ||||.
T Consensus 415 G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgE 481 (670)
T 3ju4_A 415 GAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGE 481 (670)
T ss_dssp TCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEB
T ss_pred CCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCc
Confidence 111 11111 1 2345677777543 333344556666777787665 88984
No 109
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.10 E-value=1.2 Score=45.80 Aligned_cols=149 Identities=7% Similarity=0.073 Sum_probs=77.3
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE--eCCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP--WENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~--~~~~iyv~GG~~~~~~~~~ 272 (572)
++.+++.|+.++ .+.++|+.+..-..+.... .....=.+++. .++.+++.|+.+.
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~------------gH~~~V~~l~f~p~~~~~l~s~s~D~------ 187 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGI------------GAGGSITGLKFNPLNTNQFYASSMEG------ 187 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECCC------------SSSCCCCEEEECSSCTTEEEEECSSS------
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEcc------------CCCCCEEEEEEeCCCCCEEEEEeCCC------
Confidence 456777887432 5888888776543332211 01111112222 2566777777654
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
.|.++|+.+.....+.... .......++... ++.+++.|+.+ ..+.++|+.+..-..+. ......
T Consensus 188 ~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~~~~~~~------~h~~~v 253 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSD--TINIWFCSLDVSASSRMVVTGDNV------GNVILLNMDGKELWNLR------MHKKKV 253 (435)
T ss_dssp CEEEEETTSCEEEEEECCS--SCSCCCCCEEEETTTTEEEEECSS------SBEEEEESSSCBCCCSB------CCSSCE
T ss_pred EEEEeeccCCceeEEeccC--CCCccEEEEEECCCCCEEEEEeCC------CcEeeeccCcceeEEEe------cccceE
Confidence 4888999887766554321 111112233333 56777888754 34888888654321111 111111
Q ss_pred EEEEE--cCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 352 AAAVH--AERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 352 ~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
.++.+ .++.+++.|+.+ ..+.+||+.+..
T Consensus 254 ~~v~~~p~~~~~~~s~s~d-----~~v~iwd~~~~~ 284 (435)
T 4e54_B 254 THVALNPCCDWFLATASVD-----QTVKIWDLRQVR 284 (435)
T ss_dssp EEEEECTTCSSEEEEEETT-----SBCCEEETTTCC
T ss_pred EeeeecCCCceEEEEecCc-----ceeeEEeccccc
Confidence 22222 234477777754 346778876643
No 110
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=93.04 E-value=7.5 Score=38.93 Aligned_cols=192 Identities=15% Similarity=0.097 Sum_probs=96.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~ 273 (572)
++++++.|+.+ ..+.+||+.+.+-... .. .....-.+++.. ++.+++.|+.+. .
T Consensus 108 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~------------~h~~~v~~~~~~~~~~~l~s~s~d~------~ 162 (420)
T 3vl1_A 108 QMRRFILGTTE-----GDIKVLDSNFNLQREI--DQ------------AHVSEITKLKFFPSGEALISSSQDM------Q 162 (420)
T ss_dssp SSCEEEEEETT-----SCEEEECTTSCEEEEE--TT------------SSSSCEEEEEECTTSSEEEEEETTS------E
T ss_pred CCCEEEEEECC-----CCEEEEeCCCcceeee--cc------------cccCccEEEEECCCCCEEEEEeCCC------e
Confidence 56677777632 3588889876654332 11 011111222222 566777777653 5
Q ss_pred EEEEECCCCceE-EeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 274 VKVFDLQTCSWS-TLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 274 v~~yd~~~~~W~-~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
+.+||+.+.+-. .+. .....-.+++.. ++.+++.|+.++ .+.+||+.+.+-...-.....+. ..-.
T Consensus 163 i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~-~~v~ 230 (420)
T 3vl1_A 163 LKIWSVKDGSNPRTLI-----GHRATVTDIAIIDRGRNVLSASLDG------TIRLWECGTGTTIHTFNRKENPH-DGVN 230 (420)
T ss_dssp EEEEETTTCCCCEEEE-----CCSSCEEEEEEETTTTEEEEEETTS------CEEEEETTTTEEEEEECBTTBTT-CCEE
T ss_pred EEEEeCCCCcCceEEc-----CCCCcEEEEEEcCCCCEEEEEcCCC------cEEEeECCCCceeEEeecCCCCC-CCcc
Confidence 889998765422 221 011112233333 456666777543 48888988765333221100011 1111
Q ss_pred EEEE---------------------EcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCc
Q 008260 352 AAAV---------------------HAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGEN 410 (572)
Q Consensus 352 ~~~~---------------------~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~ 410 (572)
+.+. ..++.+++.|+.+ ..+.+||+.+.+-..... ..... ...++.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~---~~~~~-~v~~~~~~~- 300 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS-----GVITVHNVFSKEQTIQLP---SKFTC-SCNSLTVDG- 300 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT-----SCEEEEETTTCCEEEEEC---CTTSS-CEEEEEECS-
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC-----CeEEEEECCCCceeEEcc---cccCC-CceeEEEeC-
Confidence 1111 1345577777754 458999998765433211 11111 122222322
Q ss_pred cccceeeeeeccCCCCE-EEEEcCCCCCccCcEEEEeCCCCc
Q 008260 411 WFLGLSLVVSSYSGEDV-IVAFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 411 ~~iG~s~~~~~~~g~~~-l~v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
.+. +++.|+.++ .+.+||+.+..
T Consensus 301 --------------~~~~~l~~g~~dg----~i~vwd~~~~~ 324 (420)
T 3vl1_A 301 --------------NNANYIYAGYENG----MLAQWDLRSPE 324 (420)
T ss_dssp --------------SCTTEEEEEETTS----EEEEEETTCTT
T ss_pred --------------CCCCEEEEEeCCC----eEEEEEcCCCc
Confidence 113 777788664 48899987753
No 111
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=93.04 E-value=4.5 Score=39.19 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=17.2
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEE
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSK 225 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 225 (572)
+.+|+.+.. ...+++||+.+.+-..
T Consensus 55 ~~~~v~~~~-----~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 55 RTAYVLNNH-----YGDIYGIDLDTCKNTF 79 (349)
T ss_dssp SEEEEEETT-----TTEEEEEETTTTEEEE
T ss_pred CEEEEEeCC-----CCcEEEEeCCCCcEEE
Confidence 467877641 2469999998876554
No 112
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=92.94 E-value=3.2 Score=40.28 Aligned_cols=159 Identities=15% Similarity=0.163 Sum_probs=80.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CC-EEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-EN-KLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~-~iyv~GG~~~~~~~~~ 272 (572)
++++|+.++. .+.++++|+.+.+....-... ....-+.++.. ++ .+|+.+... .
T Consensus 10 ~~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~s~dg~~~~v~~~~~------~ 65 (349)
T 1jmx_B 10 GHEYMIVTNY-----PNNLHVVDVASDTVYKSCVMP-------------DKFGPGTAMMAPDNRTAYVLNNHY------G 65 (349)
T ss_dssp TCEEEEEEET-----TTEEEEEETTTTEEEEEEECS-------------SCCSSCEEEECTTSSEEEEEETTT------T
T ss_pred CCEEEEEeCC-----CCeEEEEECCCCcEEEEEecC-------------CCCCCceeEECCCCCEEEEEeCCC------C
Confidence 5778888763 247999999988765433221 10011233333 44 577776432 3
Q ss_pred eEEEEECCCCceEEeccCCCCCC--CCcceEEEEE--CCEEEEEecC--CCCCCC---CCceEEEECCCCcEEE-eeCCC
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPV--SRGGQSVTLV--GTSLVIFGGE--DAKRSL---LNDLHILDLETMTWDE-IDAVG 342 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~--~R~~~~~~~~--~~~iyv~GG~--~~~~~~---~~~v~~yd~~t~~W~~-v~~~g 342 (572)
.+++||+.+.+-...-..+..+. ...-+.+++. +..||+.+.. .....+ .+.+++||+.+.+-.. +...
T Consensus 66 ~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~- 144 (349)
T 1jmx_B 66 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF- 144 (349)
T ss_dssp EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-
T ss_pred cEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-
Confidence 69999998877543322111110 1112333443 3356655421 000001 2579999988743211 1111
Q ss_pred CCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 343 VPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 343 ~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
+.++.-.+++...++.+|+.+ .+++++|+.+.+-..
T Consensus 145 --~~~~~~~~~~~s~dg~l~~~~--------~~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 145 --PMPRQVYLMRAADDGSLYVAG--------PDIYKMDVKTGKYTV 180 (349)
T ss_dssp --ECCSSCCCEEECTTSCEEEES--------SSEEEECTTTCCEEE
T ss_pred --cCCCcccceeECCCCcEEEcc--------CcEEEEeCCCCceec
Confidence 122233344455555577743 249999998776543
No 113
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=92.90 E-value=6.7 Score=37.41 Aligned_cols=152 Identities=12% Similarity=-0.024 Sum_probs=81.3
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCcceeE
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~v 274 (572)
+.||+++.. ...+++||+.+. .+.+... . ..-++++.. ++++|+..... ..+
T Consensus 40 ~~l~~~~~~-----~~~i~~~~~~~~-~~~~~~~--------------~-~~~~~l~~~~dg~l~v~~~~~------~~i 92 (296)
T 3e5z_A 40 SAVIFSDVR-----QNRTWAWSDDGQ-LSPEMHP--------------S-HHQNGHCLNKQGHLIACSHGL------RRL 92 (296)
T ss_dssp TEEEEEEGG-----GTEEEEEETTSC-EEEEESS--------------C-SSEEEEEECTTCCEEEEETTT------TEE
T ss_pred CEEEEEeCC-----CCEEEEEECCCC-eEEEECC--------------C-CCcceeeECCCCcEEEEecCC------CeE
Confidence 458888752 246999999987 5544321 1 112233332 67787764321 368
Q ss_pred EEEECCCCceEEeccCC-CCCCCCcceEEEEE-CCEEEEE----ecCC------C-CCCCCCceEEEECCCCcEEEeeCC
Q 008260 275 KVFDLQTCSWSTLKTYG-KPPVSRGGQSVTLV-GTSLVIF----GGED------A-KRSLLNDLHILDLETMTWDEIDAV 341 (572)
Q Consensus 275 ~~yd~~~~~W~~~~~~g-~~p~~R~~~~~~~~-~~~iyv~----GG~~------~-~~~~~~~v~~yd~~t~~W~~v~~~ 341 (572)
.+||+.+.+.+.+.... ..+..+.. .+++. +++||+. |... . .......++.||+. .+...+...
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~ 170 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPN-DVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD 170 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCC-CEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCC-CEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC
Confidence 99999888877664210 11111112 23333 6788886 4321 0 01113479999987 555555322
Q ss_pred CCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECC-CCcE
Q 008260 342 GVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQ-TMEW 386 (572)
Q Consensus 342 g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-t~~W 386 (572)
...-.+.+...++.+++.+... +.+++||+. +.+.
T Consensus 171 -----~~~~~gi~~s~dg~~lv~~~~~-----~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 171 -----RVKPNGLAFLPSGNLLVSDTGD-----NATHRYCLNARGET 206 (296)
T ss_dssp -----CSSEEEEEECTTSCEEEEETTT-----TEEEEEEECSSSCE
T ss_pred -----CCCCccEEECCCCCEEEEeCCC-----CeEEEEEECCCCcC
Confidence 1122344444455455554332 578999986 4555
No 114
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.83 E-value=3.4 Score=45.91 Aligned_cols=150 Identities=11% Similarity=0.040 Sum_probs=77.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~ 273 (572)
++..+++|+. -..+.+||..+.+....-.. ....-.+++.. ++..++.|+.+. .
T Consensus 66 ~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~~dg------~ 120 (814)
T 3mkq_A 66 RKNWIIVGSD-----DFRIRVFNYNTGEKVVDFEA--------------HPDYIRSIAVHPTKPYVLSGSDDL------T 120 (814)
T ss_dssp GGTEEEEEET-----TSEEEEEETTTCCEEEEEEC--------------CSSCEEEEEECSSSSEEEEEETTS------E
T ss_pred CCCEEEEEeC-----CCeEEEEECCCCcEEEEEec--------------CCCCEEEEEEeCCCCEEEEEcCCC------E
Confidence 4556667763 23689999988765443221 11111122222 555666666543 5
Q ss_pred EEEEECCCC-ceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccc
Q 008260 274 VKVFDLQTC-SWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (572)
Q Consensus 274 v~~yd~~~~-~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~ 350 (572)
+.+||..+. .....-. .....-.+++.. ++.+++.|+.+ ..+.+||+.+..-...... ......
T Consensus 121 i~vw~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~---~~~~~v 187 (814)
T 3mkq_A 121 VKLWNWENNWALEQTFE----GHEHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTT---GQERGV 187 (814)
T ss_dssp EEEEEGGGTSEEEEEEE----CCSSCEEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEEC---CCTTCC
T ss_pred EEEEECCCCceEEEEEc----CCCCcEEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEec---CCCCCE
Confidence 888888765 3322211 111112233333 35677777754 3588899865542222111 111222
Q ss_pred eEEEEEc--CCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 351 HAAAVHA--ERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 351 ~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
.+.+... ++.+++.|+.+ ..+..||..+.+-.
T Consensus 188 ~~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~ 221 (814)
T 3mkq_A 188 NYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCV 221 (814)
T ss_dssp CEEEECCSTTCCEEEEECTT-----SEEEEEETTTTEEE
T ss_pred EEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEE
Confidence 2333333 45577777754 46889998876643
No 115
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=92.76 E-value=14 Score=40.59 Aligned_cols=131 Identities=16% Similarity=0.128 Sum_probs=72.1
Q ss_pred ceeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--cEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccC
Q 008260 188 EHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHT 265 (572)
Q Consensus 188 ~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~ 265 (572)
..+-++.++.||+... .+.++.+|..+. .|+.-........ ..........+.+..+++||+...
T Consensus 59 ~~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~v~~~-- 125 (668)
T 1kv9_A 59 EATPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKA-----RTSCCDAVNRGVALWGDKVYVGTL-- 125 (668)
T ss_dssp CCCCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGG-----GGCTTCSCCCCCEEEBTEEEEECT--
T ss_pred ccCCEEECCEEEEECC------CCeEEEEECCCChhceEECCCCCcccc-----ccccccCCccceEEECCEEEEEcC--
Confidence 3455678999999865 246999998875 4876432210000 000000012234556888887532
Q ss_pred CCCCcceeEEEEECCCCc--eEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCc--EEEe
Q 008260 266 KDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEI 338 (572)
Q Consensus 266 ~~~~~~~~v~~yd~~~~~--W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~v 338 (572)
...+..+|..+.+ |+.-... .........+.++.++.+|+-.+. ........++.||+.+.+ |+.-
T Consensus 126 -----dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~~~v~vg~~~-~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 126 -----DGRLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRVVKGKVIIGNGG-AEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp -----TSEEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred -----CCEEEEEECCCCCEeeeeccCC-CCCcceecCCCEEECCEEEEeCCC-CCcCCCCEEEEEECCCCcEEEEec
Confidence 1368999988764 8765321 111112222345568888764322 111134579999998764 8764
No 116
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=92.35 E-value=5.4 Score=39.01 Aligned_cols=156 Identities=12% Similarity=0.108 Sum_probs=79.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCC--CcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCc
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRS--WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSE 270 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~ 270 (572)
++++++.|+.+ ..+.++|+.. ..+..+.... ........+.+ ++.+++.|+.+.
T Consensus 118 ~g~~las~s~D-----~~v~iwd~~~~~~~~~~~~~~~-------------~h~~~v~~v~~~p~~~~l~s~s~D~---- 175 (330)
T 2hes_X 118 DGYYLATCSRD-----KSVWIWETDESGEEYECISVLQ-------------EHSQDVKHVIWHPSEALLASSSYDD---- 175 (330)
T ss_dssp TSCEEEEEETT-----SCEEEEECCTTCCCCEEEEEEC-------------CCSSCEEEEEECSSSSEEEEEETTS----
T ss_pred CCCEEEEEeCC-----CEEEEEeccCCCCCeEEEEEec-------------cCCCceEEEEECCCCCEEEEEcCCC----
Confidence 45666666632 3578888743 3455444332 11111222222 567777787764
Q ss_pred ceeEEEEECCCCceEEeccCCCCCCCCcceEEEEEC---CEEEEEecCCCCCCCCCceEEEECCC------CcEEEeeCC
Q 008260 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVG---TSLVIFGGEDAKRSLLNDLHILDLET------MTWDEIDAV 341 (572)
Q Consensus 271 ~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~---~~iyv~GG~~~~~~~~~~v~~yd~~t------~~W~~v~~~ 341 (572)
.+.++|..+..|..+..... ....-.++.... +..++.|+.++ .+.++|+.+ ..|..+...
T Consensus 176 --~i~iW~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~D~------~v~iw~~~~~~~~~~~~~~~~~~~ 245 (330)
T 2hes_X 176 --TVRIWKDYDDDWECVAVLNG--HEGTVWSSDFDKTEGVFRLCSGSDDS------TVRVWKYMGDDEDDQQEWVCEAIL 245 (330)
T ss_dssp --CEEEEEEETTEEEEEEEECC--CSSCEEEEEECCSSSSCEEEEEETTS------CEEEEEEEEECTTSCEEEEEEEEC
T ss_pred --eEEEEECCCCCeeEEEEccC--CCCcEEEEEecCCCCeeEEEEEeCCC------eEEEEEecCCCccccceeEEeeec
Confidence 47788887777766643211 111111222222 34566676543 355555432 246555433
Q ss_pred CCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 342 GVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 342 g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
.. .....-.+++...++ +++.||.+ ..+.+||..+..|..+
T Consensus 246 ~~-~h~~~v~~v~~s~~~-~l~s~~~d-----g~v~iw~~~~~~~~~~ 286 (330)
T 2hes_X 246 PD-VHKRQVYNVAWGFNG-LIASVGAD-----GVLAVYEEVDGEWKVF 286 (330)
T ss_dssp CS-CCSSCEEEEEECTTS-CEEEEETT-----SCEEEEEEETTEEEEE
T ss_pred cc-ccccceEEEEEcCCC-EEEEEeCC-----CEEEEEEcCCCceEEE
Confidence 10 011222233333444 67777754 4578888888888655
No 117
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=92.20 E-value=1.8 Score=42.83 Aligned_cols=110 Identities=13% Similarity=0.152 Sum_probs=61.7
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++.+++.||.+. .|.+||..+.+|...... .......-.+++.. ++.+++.|+.++ .+.++|..+.
T Consensus 27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~g~~l~s~s~D~------~v~iw~~~~~ 93 (345)
T 3fm0_A 27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVL-SEGHQRTVRKVAWSPCGNYLASASFDA------TTCIWKKNQD 93 (345)
T ss_dssp TSSCEEEEETTS------CEEEEEEETTEEEEEEEE-CSSCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECCC
T ss_pred CCCEEEEEcCCC------eEEEEEcCCCcceeeeee-ccccCCcEEEEEECCCCCEEEEEECCC------cEEEEEccCC
Confidence 677888888764 488888888887644311 00111112223332 566777787643 3777887777
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
.+..+.... .....-.+++...++.+++.|+.+ ..+.++|+.+.
T Consensus 94 ~~~~~~~~~--~h~~~v~~v~~sp~~~~l~s~s~D-----~~v~iwd~~~~ 137 (345)
T 3fm0_A 94 DFECVTTLE--GHENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVDEE 137 (345)
T ss_dssp -EEEEEEEC--CCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEECTT
T ss_pred CeEEEEEcc--CCCCCceEEEEeCCCCEEEEEECC-----CeEEEEECCCC
Confidence 766554331 111122233444455578888765 45778887654
No 118
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=92.20 E-value=3.6 Score=39.65 Aligned_cols=92 Identities=15% Similarity=0.085 Sum_probs=50.0
Q ss_pred ceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcC-CEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCcccc
Q 008260 324 DLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGH 402 (572)
Q Consensus 324 ~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 402 (572)
.++++|+.+.+-..+... +......++++..+ +.||+. -+.+++||+.+.+-...-. ....-.
T Consensus 220 ~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~-----~~~~~~ 283 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVR---IMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVP-----LPHSYY 283 (337)
T ss_dssp EEEEEETTTCCEEEEEEE---ECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEE-----CSSCCC
T ss_pred ceEEEeCCCCCceEeecC---CCCCceeeEEECCCCCEEEEe--------CCeEEEEECCCCcCcceec-----CCCcee
Confidence 589999988876533221 22222233444444 445554 1679999998876543321 111223
Q ss_pred EEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCc
Q 008260 403 AGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 403 ~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
+++...+ ...||+ ++.+ +.+.+||+.+..
T Consensus 284 ~~~~s~d---------------g~~l~~-~~~~----~~i~v~d~~~~~ 312 (337)
T 1pby_B 284 SVNVSTD---------------GSTVWL-GGAL----GDLAAYDAETLE 312 (337)
T ss_dssp EEEECTT---------------SCEEEE-ESBS----SEEEEEETTTCC
T ss_pred eEEECCC---------------CCEEEE-EcCC----CcEEEEECcCCc
Confidence 3444433 235665 4433 569999987763
No 119
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=92.18 E-value=7.3 Score=39.49 Aligned_cols=149 Identities=10% Similarity=0.094 Sum_probs=77.0
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCCCcceeE
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~v 274 (572)
+.+++.|+.+ ..+.++|..+.+-...-.. ....-.+++. -++.+++.||.+. .|
T Consensus 120 ~~~l~s~s~D-----g~i~vwd~~~~~~~~~l~~--------------h~~~V~~v~~~~~~~~l~sgs~D~------~i 174 (410)
T 1vyh_C 120 FSVMVSASED-----ATIKVWDYETGDFERTLKG--------------HTDSVQDISFDHSGKLLASCSADM------TI 174 (410)
T ss_dssp SSEEEEEESS-----SCEEEEETTTCCCCEEECC--------------CSSCEEEEEECTTSSEEEEEETTS------CC
T ss_pred CCEEEEEeCC-----CeEEEEECCCCcEEEEEec--------------cCCcEEEEEEcCCCCEEEEEeCCC------eE
Confidence 5567777632 2588889887654322110 0111112222 2567788888764 37
Q ss_pred EEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEE
Q 008260 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAA 353 (572)
Q Consensus 275 ~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~ 353 (572)
.+||+.+.+-...- ......-.++... ++..++.|+.+ ..+.+||+.+..-...-.. ....-.+.
T Consensus 175 ~iwd~~~~~~~~~~----~~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~~----h~~~v~~~ 240 (410)
T 1vyh_C 175 KLWDFQGFECIRTM----HGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKTFTG----HREWVRMV 240 (410)
T ss_dssp CEEETTSSCEEECC----CCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEEEC----CSSCEEEE
T ss_pred EEEeCCCCceeEEE----cCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEeC----CCccEEEE
Confidence 78888665422211 0111111222222 45666777754 3588899887653222111 11111223
Q ss_pred EEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 354 AVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 354 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
....++.+++.|+.+ ..+.++|+.+.+...
T Consensus 241 ~~~~~g~~l~s~s~D-----~~v~vwd~~~~~~~~ 270 (410)
T 1vyh_C 241 RPNQDGTLIASCSND-----QTVRVWVVATKECKA 270 (410)
T ss_dssp EECTTSSEEEEEETT-----SCEEEEETTTCCEEE
T ss_pred EECCCCCEEEEEcCC-----CeEEEEECCCCceee
Confidence 333455578888765 468888888776543
No 120
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=92.16 E-value=4.1 Score=39.67 Aligned_cols=111 Identities=12% Similarity=0.139 Sum_probs=56.7
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCC-CceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQT-CSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
++..++.|+.+. .+.+||+.+ .+-...-. . ....-.+++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 186 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~ 249 (369)
T 3zwl_B 186 KGKYIIAGHKDG------KISKYDVSNNYEYVDSID---L-HEKSISDMQFSPDLTYFITSSRD------TNSFLVDVST 249 (369)
T ss_dssp GGCEEEEEETTS------EEEEEETTTTTEEEEEEE---C-CSSCEEEEEECTTSSEEEEEETT------SEEEEEETTT
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEeEEEEe---c-CCCceeEEEECCCCCEEEEecCC------ceEEEEECCC
Confidence 566667776543 589999987 33222211 1 11112223332 55666676643 3588999887
Q ss_pred CcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcC---------cCcEEEEECCCCcE
Q 008260 333 MTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAAC---------FNDLHVLDLQTMEW 386 (572)
Q Consensus 333 ~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~---------~~~v~~yd~~t~~W 386 (572)
.+-...-.. ......++...++..+++|+.+.... ...+..||..+.+-
T Consensus 250 ~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 250 LQVLKKYET-----DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp CCEEEEEEC-----SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred CceeeeecC-----CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 665443221 12223344444445666666433211 11577888776543
No 121
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=92.05 E-value=11 Score=37.73 Aligned_cols=66 Identities=15% Similarity=0.030 Sum_probs=37.9
Q ss_pred CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCE-EEEEeCCCCCcCcCcEEEEECCCC
Q 008260 306 GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERY-LLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 306 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~-lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
++++++.|+.+ ..+.+||+.+.+-...... .....-.+++...++. +++.|+.+ ..+.+||+.+.
T Consensus 258 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~ 323 (420)
T 3vl1_A 258 YGKYVIAGHVS------GVITVHNVFSKEQTIQLPS---KFTCSCNSLTVDGNNANYIYAGYEN-----GMLAQWDLRSP 323 (420)
T ss_dssp TTEEEEEEETT------SCEEEEETTTCCEEEEECC---TTSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCT
T ss_pred CCCEEEEEcCC------CeEEEEECCCCceeEEccc---ccCCCceeEEEeCCCCCEEEEEeCC-----CeEEEEEcCCC
Confidence 45677777653 3488999887653332211 1112223344444444 77777754 46899998875
Q ss_pred c
Q 008260 385 E 385 (572)
Q Consensus 385 ~ 385 (572)
.
T Consensus 324 ~ 324 (420)
T 3vl1_A 324 E 324 (420)
T ss_dssp T
T ss_pred c
Confidence 3
No 122
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=92.02 E-value=5.9 Score=37.86 Aligned_cols=156 Identities=11% Similarity=0.147 Sum_probs=77.9
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEe-eecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCC-------
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKI-QAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTK------- 266 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~------- 266 (572)
++||+.... +.+++||+. .+...+ .... ...+. ..-+.++. -++++|+......
T Consensus 83 g~l~v~~~~------~~l~~~d~~-g~~~~~~~~~~---------~~~~~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 145 (314)
T 1pjx_A 83 NQLFVADMR------LGLLVVQTD-GTFEEIAKKDS---------EGRRM-QGCNDCAFDYEGNLWITAPAGEVAPADYT 145 (314)
T ss_dssp SEEEEEETT------TEEEEEETT-SCEEECCSBCT---------TSCBC-BCCCEEEECTTSCEEEEECBCBCTTSCCC
T ss_pred CcEEEEECC------CCEEEEeCC-CCEEEEEeccC---------CCccc-cCCcCEEECCCCCEEEEecCccccccccc
Confidence 688887641 269999998 776654 3211 00011 11123333 2678887754321
Q ss_pred --CCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE----C-C-EEEEEecCCCCCCCCCceEEEECC-CCcEEE
Q 008260 267 --DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV----G-T-SLVIFGGEDAKRSLLNDLHILDLE-TMTWDE 337 (572)
Q Consensus 267 --~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~----~-~-~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~ 337 (572)
.......+++||+. .+...+... ... ....+.. . + .||+.... .+.+++||++ +.+...
T Consensus 146 ~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~---~~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~ 213 (314)
T 1pjx_A 146 RSMQEKFGSIYCFTTD-GQMIQVDTA--FQF---PNGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp BTTSSSCEEEEEECTT-SCEEEEEEE--ESS---EEEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEE
T ss_pred ccccCCCCeEEEECCC-CCEEEeccC--CCC---cceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCcccc
Confidence 11223579999987 555554311 111 1233443 2 3 57776532 3568899876 444322
Q ss_pred eeCCCCCCCc--ccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 338 IDAVGVPPSP--RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 338 v~~~g~~p~~--R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
.......+.. ..-..+++..++.||+....+ +.|.+||+.+.+
T Consensus 214 ~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~-----~~i~~~d~~~g~ 258 (314)
T 1pjx_A 214 KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS-----SHIEVFGPDGGQ 258 (314)
T ss_dssp EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT-----TEEEEECTTCBS
T ss_pred ceEEEECCCCCCCCCCceEECCCCCEEEEEcCC-----CEEEEEcCCCCc
Confidence 1111000111 122334444556688874321 468999988543
No 123
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=92.01 E-value=8.9 Score=36.72 Aligned_cols=154 Identities=9% Similarity=-0.008 Sum_probs=78.0
Q ss_pred EEEECCEEEEEccCCCCcccCcEEEEEcCCC-cEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCC
Q 008260 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSW-AWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDP 268 (572)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~-~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~ 268 (572)
.+.-+++||+.+. +.++.||+... .|+.-.. ....-+++... ++++++.....
T Consensus 43 ~~~pdG~ilvs~~-------~~V~~~d~~G~~~W~~~~~---------------~~~~~~~~~~~~dG~~lv~~~~~--- 97 (276)
T 3no2_A 43 AATKAGEILFSYS-------KGAKMITRDGRELWNIAAP---------------AGCEMQTARILPDGNALVAWCGH--- 97 (276)
T ss_dssp EECTTSCEEEECB-------SEEEEECTTSCEEEEEECC---------------TTCEEEEEEECTTSCEEEEEEST---
T ss_pred EECCCCCEEEeCC-------CCEEEECCCCCEEEEEcCC---------------CCccccccEECCCCCEEEEecCC---
Confidence 3334678888432 35999998322 3654321 11122333333 66666654431
Q ss_pred CcceeEEEEECCCCc-eEEeccCC-CCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCC-cEEEeeCCCCCC
Q 008260 269 SEIIQVKVFDLQTCS-WSTLKTYG-KPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM-TWDEIDAVGVPP 345 (572)
Q Consensus 269 ~~~~~v~~yd~~~~~-W~~~~~~g-~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~v~~~g~~p 345 (572)
...++.+|+.... |+.-...+ ..+...........++.+++.... .+.+.+||++.. .|+.-...
T Consensus 98 --~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~------~~~v~~~d~~G~~~w~~~~~~---- 165 (276)
T 3no2_A 98 --PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA------TSEVREIAPNGQLLNSVKLSG---- 165 (276)
T ss_dssp --TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECSS----
T ss_pred --CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC------CCEEEEECCCCCEEEEEECCC----
Confidence 2368888885543 43321111 011111112223335566555432 345899998733 36544321
Q ss_pred CcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc--EEee
Q 008260 346 SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WSRP 389 (572)
Q Consensus 346 ~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~v 389 (572)
..+++....++.++|.+..+ ..+..||+.+.+ |+.-
T Consensus 166 ---~~~~~~~~~~g~~~v~~~~~-----~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 166 ---TPFSSAFLDNGDCLVACGDA-----HCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp ---CCCEEEECTTSCEEEECBTT-----SEEEEECTTTCCEEEEEE
T ss_pred ---CccceeEcCCCCEEEEeCCC-----CeEEEEeCcCCcEEEEec
Confidence 12345555555577776542 459999998554 6654
No 124
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=91.99 E-value=1.7 Score=43.35 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=69.4
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
+++++ .++.++ .|.+||+.+.+-..............-.+++.. +++.++.|+.++ .+.++|+.+.
T Consensus 105 d~~~l-~~s~dg------~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg------~v~iwd~~~~ 171 (357)
T 4g56_B 105 EKGIL-VASDSG------AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF------SVKVWDLSQK 171 (357)
T ss_dssp TTEEE-EEETTS------CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS------CEEEEETTTT
T ss_pred CCCEE-EEECCC------EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC------eEEEEECCCC
Confidence 55554 455432 478888776542222100000011111223332 556777777643 4888998877
Q ss_pred cEEEeeCCCCCCCcccceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEE-CCcc
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTI-GENW 411 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~-~~~~ 411 (572)
+-...-.. ... .-.+++... ++.+++.||.+ ..+.++|+.+.+-..... .........++.+ .+
T Consensus 172 ~~~~~~~~---h~~-~v~~v~~s~~~~~~~~s~~~d-----g~v~~wd~~~~~~~~~~~---~~~~~~~v~~v~~sp~-- 237 (357)
T 4g56_B 172 AVLKSYNA---HSS-EVNCVAACPGKDTIFLSCGED-----GRILLWDTRKPKPATRID---FCASDTIPTSVTWHPE-- 237 (357)
T ss_dssp EEEEEECC---CSS-CEEEEEECTTCSSCEEEEETT-----SCEEECCTTSSSCBCBCC---CTTCCSCEEEEEECTT--
T ss_pred cEEEEEcC---CCC-CEEEEEEccCCCceeeeeccC-----CceEEEECCCCceeeeee---eccccccccchhhhhc--
Confidence 64333211 111 112222222 33477777754 357888887764322210 1111111222222 22
Q ss_pred ccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCc
Q 008260 412 FLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 412 ~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
.+.+++.|+.++. |.+||+.+..
T Consensus 238 -------------~~~~la~g~~d~~----i~~wd~~~~~ 260 (357)
T 4g56_B 238 -------------KDDTFACGDETGN----VSLVNIKNPD 260 (357)
T ss_dssp -------------STTEEEEEESSSC----EEEEESSCGG
T ss_pred -------------ccceEEEeecccc----eeEEECCCCc
Confidence 2357888886654 8889987653
No 125
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=91.92 E-value=9.2 Score=36.72 Aligned_cols=162 Identities=9% Similarity=0.104 Sum_probs=78.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCC-CcEEEee--ecccccCCCCCCCCCCCCCcceeEEEe-CC-EEEEEeccCCCCC
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRS-WAWSKIQ--AKAVAESTESPSPALLTPCAGHSLIPW-EN-KLLSIAGHTKDPS 269 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t-~~W~~~~--~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~-~iyv~GG~~~~~~ 269 (572)
++.||+.+.. -+.+.+||+.+ .+...+. .... +....-..++.. ++ .+|+.+..+
T Consensus 140 g~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~pdg~~l~~~~~~~---- 199 (343)
T 1ri6_A 140 NRTLWVPALK-----QDRICLFTVSDDGHLVAQDPAEVTT-----------VEGAGPRHMVFHPNEQYAYCVNELN---- 199 (343)
T ss_dssp SSEEEEEEGG-----GTEEEEEEECTTSCEEEEEEEEEEC-----------STTCCEEEEEECTTSSEEEEEETTT----
T ss_pred CCEEEEecCC-----CCEEEEEEecCCCceeeeccccccc-----------CCCCCcceEEECCCCCEEEEEeCCC----
Confidence 3467776521 24689999987 6666443 2210 111111122222 34 577765432
Q ss_pred cceeEEEEECC--CCceEEeccCCCCCCC----CcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECC--CCcEEEee
Q 008260 270 EIIQVKVFDLQ--TCSWSTLKTYGKPPVS----RGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLE--TMTWDEID 339 (572)
Q Consensus 270 ~~~~v~~yd~~--~~~W~~~~~~g~~p~~----R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~--t~~W~~v~ 339 (572)
..+.+||.. +.++..+......+.. .....++.. ++.||+.+.. .+.+.+||+. +.+++.+.
T Consensus 200 --~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~------~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 200 --SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT------ASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp --TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT------TTEEEEEEECTTSCCEEEEE
T ss_pred --CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC------CCEEEEEEEcCCCCceEEee
Confidence 367888874 4554433221122221 111123333 3467766542 2458888887 55666654
Q ss_pred CCCCCCCcccceEEEEEcC-CEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 340 AVGVPPSPRSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 340 ~~g~~p~~R~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
.. +....-..++...+ +.||+.++.+ +. -.+|.+|+.+.+++.+.
T Consensus 272 ~~---~~~~~~~~~~~s~dg~~l~~~~~~~-~~--v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 272 FQ---PTETQPRGFNVDHSGKYLIAAGQKS-HH--ISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp EE---ECSSSCCCEEECTTSSEEEEECTTT-CE--EEEEEEETTTTEEEEEE
T ss_pred ee---cCCCccceEEECCCCCEEEEecCCC-Ce--EEEEEEcCCCceeeEcc
Confidence 33 11111223344434 4455554322 11 23555688888888774
No 126
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=91.84 E-value=0.13 Score=50.88 Aligned_cols=70 Identities=14% Similarity=0.023 Sum_probs=52.1
Q ss_pred ccCCCChhhHHHHhhheeeeeeCCCCCC--CCCCCC----------hhhhHhHHHhhcCCCCCHHHHHHHHHHHHHHhCC
Q 008260 36 LTSKFSNDSALLLYALYQQATVGPCNVP--KPSSWS----------PVEQSKWKSWQGLGNMATTEAMRLFVKILEEEDP 103 (572)
Q Consensus 36 ~~~~~~~~~~l~lY~l~kQat~G~~~~~--~p~~~~----------~~~~~k~~aW~~~~~~~~~~a~~~yi~~~~~~~p 103 (572)
+.-..+.|+.++|=||-=||..||++.. .|+.+. -..+.=-+.|+++.|||++||+.+|++++.+ .|
T Consensus 124 G~~~c~~e~a~~LAAl~~Qae~Gd~~~~~~~~~yl~~~~~~P~~~~~~~~~I~~~h~~~~g~s~~eA~~~yL~~a~~-l~ 202 (296)
T 3qij_A 124 GRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKK-LS 202 (296)
T ss_dssp TSSCCCHHHHHHHHHHHHHHHHCSCCHHHHTTCCCTTSCCSSSCCHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHTT-ST
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCCccccchhhCcHhhcCCcCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhc-cc
Confidence 3456789999999999999999998632 222221 1223334679999999999999999999987 45
Q ss_pred Ccc
Q 008260 104 GWY 106 (572)
Q Consensus 104 ~~~ 106 (572)
.|.
T Consensus 203 ~yG 205 (296)
T 3qij_A 203 MYG 205 (296)
T ss_dssp TTT
T ss_pred ccC
Confidence 543
No 127
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=91.79 E-value=0.18 Score=49.70 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=52.0
Q ss_pred cCCCChhhHHHHhhheeeeeeCCCCCCC--CCCCC---hh-----h-----hHhH-----HHhhcCCCCCHHHHHHHHHH
Q 008260 37 TSKFSNDSALLLYALYQQATVGPCNVPK--PSSWS---PV-----E-----QSKW-----KSWQGLGNMATTEAMRLFVK 96 (572)
Q Consensus 37 ~~~~~~~~~l~lY~l~kQat~G~~~~~~--p~~~~---~~-----~-----~~k~-----~aW~~~~~~~~~~a~~~yi~ 96 (572)
.-..+.|+.++|=||--||..||++... |+.++ +. . ...| +.|++++||+++||+.+|++
T Consensus 111 ~~~~~~e~a~~Laal~~q~~~Gd~~~~~~~~~~l~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~~A~~~yL~ 190 (294)
T 1ef1_A 111 DIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLK 190 (294)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHHHBCCCHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCCccccChhhccccccCCHHHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 4467899999999999999999997553 34331 11 1 1223 67899999999999999999
Q ss_pred HHHHhCCCcc
Q 008260 97 ILEEEDPGWY 106 (572)
Q Consensus 97 ~~~~~~p~~~ 106 (572)
++.+ .|.|.
T Consensus 191 ~~~~-lp~yG 199 (294)
T 1ef1_A 191 IAQD-LEMYG 199 (294)
T ss_dssp HHTT-STTTT
T ss_pred HHcc-cCccC
Confidence 9986 45543
No 128
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=91.78 E-value=11 Score=37.14 Aligned_cols=174 Identities=10% Similarity=0.127 Sum_probs=90.8
Q ss_pred ceEEecccCCCCCCCCcceeEEE-ECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcce
Q 008260 171 DQWIAPPISGQRPKARYEHGAAV-VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGH 249 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~h 249 (572)
..|+.+......|. . .+.++. -++.+|+.|.. ..+++-+-...+|+.+... .+..-+
T Consensus 109 ~tW~~~~~~~~~~~-~-~~~i~~~~~~~~~~~~~~------g~v~~S~DgG~tW~~~~~~--------------~~~~~~ 166 (327)
T 2xbg_A 109 QSWSQIPLDPKLPG-S-PRLIKALGNGSAEMITNV------GAIYRTKDSGKNWQALVQE--------------AIGVMR 166 (327)
T ss_dssp SSCEECCCCTTCSS-C-EEEEEEEETTEEEEEETT------CCEEEESSTTSSEEEEECS--------------CCCCEE
T ss_pred CCceECccccCCCC-C-eEEEEEECCCCEEEEeCC------ccEEEEcCCCCCCEEeecC--------------CCcceE
Confidence 38998764211221 1 233333 46888887741 1355544446789988642 222334
Q ss_pred eEEEe-CCEEEEEeccCCCCCcceeEEEEE-CCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceE
Q 008260 250 SLIPW-ENKLLSIAGHTKDPSEIIQVKVFD-LQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLH 326 (572)
Q Consensus 250 s~~~~-~~~iyv~GG~~~~~~~~~~v~~yd-~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 326 (572)
+++.. ++.+|++|-. . .++.-+ ....+|+.+.. +.....+.++.. ++.+|+.+.. ..++
T Consensus 167 ~~~~~~~~~~~~~g~~-G------~~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~~-------G~~~ 228 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSSR-G------SFYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVNG-------GKIA 228 (327)
T ss_dssp EEEECTTSCEEEEETT-S------SEEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEETT-------TEEE
T ss_pred EEEEcCCCcEEEEECC-C------cEEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEeCC-------ceEE
Confidence 44443 5666666532 1 244433 22578999852 334444455443 5678877641 1244
Q ss_pred EEECC-CCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeecc
Q 008260 327 ILDLE-TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQ 391 (572)
Q Consensus 327 ~yd~~-t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~ 391 (572)
+.+.+ ..+|+.+... ..+.....++.+...++.+|+.|+. ..+++-.-.-.+|+.+..
T Consensus 229 ~s~~D~G~tW~~~~~~-~~~~~~~~~~v~~~~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~ 287 (327)
T 2xbg_A 229 FSDPDNSENWGELLSP-LRRNSVGFLDLAYRTPNEVWLAGGA------GALLCSQDGGQTWQQDVD 287 (327)
T ss_dssp EEETTEEEEECCCBCT-TSSCCSCEEEEEESSSSCEEEEEST------TCEEEESSTTSSCEECGG
T ss_pred EecCCCCCeeEeccCC-cccCCcceEEEEecCCCEEEEEeCC------CeEEEeCCCCcccEEcCc
Confidence 44333 5689877421 0122222344444445668888863 235544444678998753
No 129
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=91.68 E-value=9.8 Score=42.38 Aligned_cols=196 Identities=11% Similarity=0.016 Sum_probs=106.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~ 273 (572)
++.||| |.. ...+++||+.+++++...... .....-.+++.. ++.||+-.. ..
T Consensus 417 ~g~lWi-gt~-----~~Gl~~~~~~~~~~~~~~~~~------------~~~~~v~~i~~d~~g~lwigt~--------~G 470 (781)
T 3v9f_A 417 EGNLWF-GTY-----LGNISYYNTRLKKFQIIELEK------------NELLDVRVFYEDKNKKIWIGTH--------AG 470 (781)
T ss_dssp TSCEEE-EET-----TEEEEEECSSSCEEEECCSTT------------TCCCCEEEEEECTTSEEEEEET--------TE
T ss_pred CCCEEE-Eec-----cCCEEEEcCCCCcEEEeccCC------------CCCCeEEEEEECCCCCEEEEEC--------Cc
Confidence 466776 321 135899999998887764310 111122233333 577777432 25
Q ss_pred EEEEECCCCceEEeccCCCCCC-CCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPV-SRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~-~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
+.+||+.+.+|+........+. ...-.+.+.. ++.|++-. . .+.+++||+.+.+++........+.. .-.
T Consensus 471 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~------~~Gl~~~~~~~~~~~~~~~~~~l~~~-~i~ 542 (781)
T 3v9f_A 471 VFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-F------GGGVGIYTPDMQLVRKFNQYEGFCSN-TIN 542 (781)
T ss_dssp EEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-S------SSCEEEECTTCCEEEEECTTTTCSCS-CEE
T ss_pred eEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-c------CCCEEEEeCCCCeEEEccCCCCCCCC-eeE
Confidence 8999999999887753211111 1111222222 56777642 2 13489999999999887643212211 112
Q ss_pred EEEEEcCCEEEEEeCCCCCcCcCcE-EEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEE
Q 008260 352 AAAVHAERYLLIFGGGSHAACFNDL-HVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVA 430 (572)
Q Consensus 352 ~~~~~~~~~lyv~GG~~~~~~~~~v-~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v 430 (572)
+.+.-.++.|++-.. +.+ ++||+.+.+++.......+|.... .+++... ++.|++
T Consensus 543 ~i~~d~~g~lWi~T~-------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~----------------~g~lW~ 598 (781)
T 3v9f_A 543 QIYRSSKGQMWLATG-------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDK----------------NGNIWA 598 (781)
T ss_dssp EEEECTTSCEEEEET-------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECS----------------SSCEEE
T ss_pred EEEECCCCCEEEEEC-------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECC----------------CCCEEE
Confidence 222323455777432 346 899999988877643322444333 2333322 336766
Q ss_pred EcCCCCCccCcEEEEeCCCCcccc
Q 008260 431 FGGYNGRYNNEVHVLKPSHKSTLS 454 (572)
Q Consensus 431 ~GG~~~~~~~dv~~yd~~~~~~~~ 454 (572)
.+. +-+.+||+.+.....
T Consensus 599 ~t~------~Gl~~~~~~~~~~~~ 616 (781)
T 3v9f_A 599 STN------TGISCYITSKKCFYT 616 (781)
T ss_dssp ECS------SCEEEEETTTTEEEE
T ss_pred EcC------CceEEEECCCCceEE
Confidence 532 347888887765443
No 130
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=91.64 E-value=0.19 Score=50.05 Aligned_cols=68 Identities=16% Similarity=0.084 Sum_probs=51.7
Q ss_pred cCCCChhhHHHHhhheeeeeeCCCCCCC--CCCCC---h---------------hhhHhHHHhhcCCCCCHHHHHHHHHH
Q 008260 37 TSKFSNDSALLLYALYQQATVGPCNVPK--PSSWS---P---------------VEQSKWKSWQGLGNMATTEAMRLFVK 96 (572)
Q Consensus 37 ~~~~~~~~~l~lY~l~kQat~G~~~~~~--p~~~~---~---------------~~~~k~~aW~~~~~~~~~~a~~~yi~ 96 (572)
.-..+.|+.++|=||--||..||++... |+.++ + ..+.=-+.|+++.|||++||+.+|++
T Consensus 131 ~~~~~~e~a~~Laal~~Qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL~ 210 (314)
T 1h4r_A 131 KIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLK 210 (314)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHTTSCCCHHHHHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCCccccchhhcchhhcCCHHHHhhccCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4467999999999999999999997653 33322 1 11222367999999999999999999
Q ss_pred HHHHhCCCc
Q 008260 97 ILEEEDPGW 105 (572)
Q Consensus 97 ~~~~~~p~~ 105 (572)
++.++ |.|
T Consensus 211 ~~~~l-p~y 218 (314)
T 1h4r_A 211 IAQDL-EMY 218 (314)
T ss_dssp HHTTS-TTT
T ss_pred HHhcc-Ccc
Confidence 99774 554
No 131
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=91.55 E-value=9.4 Score=36.08 Aligned_cols=147 Identities=10% Similarity=0.060 Sum_probs=75.0
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++..++.|+.+. .+.+||... .-..+. .+....-.+++.. ++. ++.|+.+ ..+.+||+.+.
T Consensus 154 ~~~~l~~~~~d~------~i~i~d~~~-~~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~d------g~i~i~d~~~~ 215 (313)
T 3odt_A 154 SENKFLTASADK------TIKLWQNDK-VIKTFS----GIHNDVVRHLAVVDDGH-FISCSND------GLIKLVDMHTG 215 (313)
T ss_dssp TTTEEEEEETTS------CEEEEETTE-EEEEEC----SSCSSCEEEEEEEETTE-EEEEETT------SEEEEEETTTC
T ss_pred CCCEEEEEECCC------CEEEEecCc-eEEEEe----ccCcccEEEEEEcCCCe-EEEccCC------CeEEEEECCch
Confidence 566777777654 477888322 122221 1111222233333 566 6666653 35889998866
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCcccc
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFL 413 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~i 413 (572)
+-...-.. ....-.+++...++ .++.|+.+ ..+.+||+.+.+....-. .+.. .-.+++...+
T Consensus 216 ~~~~~~~~----~~~~i~~~~~~~~~-~l~~~~~d-----g~v~iwd~~~~~~~~~~~---~~~~-~i~~~~~~~~---- 277 (313)
T 3odt_A 216 DVLRTYEG----HESFVYCIKLLPNG-DIVSCGED-----RTVRIWSKENGSLKQVIT---LPAI-SIWSVDCMSN---- 277 (313)
T ss_dssp CEEEEEEC----CSSCEEEEEECTTS-CEEEEETT-----SEEEEECTTTCCEEEEEE---CSSS-CEEEEEECTT----
T ss_pred hhhhhhhc----CCceEEEEEEecCC-CEEEEecC-----CEEEEEECCCCceeEEEe---ccCc-eEEEEEEccC----
Confidence 53322111 11122334444555 45666654 568999998876544321 1111 1112222222
Q ss_pred ceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCcccc
Q 008260 414 GLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKSTLS 454 (572)
Q Consensus 414 G~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~~~~ 454 (572)
+. ++.|+.++. +.+||+.+..+..
T Consensus 278 ------------~~-~~~~~~dg~----i~iw~~~~~~~~~ 301 (313)
T 3odt_A 278 ------------GD-IIVGSSDNL----VRIFSQEKSRWAS 301 (313)
T ss_dssp ------------SC-EEEEETTSC----EEEEESCGGGCCC
T ss_pred ------------CC-EEEEeCCCc----EEEEeCCCCceee
Confidence 24 455776654 8899988765544
No 132
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.55 E-value=7.3 Score=38.51 Aligned_cols=153 Identities=10% Similarity=0.035 Sum_probs=79.9
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCE-EEEEeccCCCCCcceeEEEEECCCCceEEec
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENK-LLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK 288 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 288 (572)
..++++|+.+.+...+... .....+....- ++. |++... .........++.+|+.+.++..+.
T Consensus 168 ~~l~~~d~~~g~~~~~~~~--------------~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD--------------TAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE--------------SSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESS
T ss_pred ceEEEEECCCCcEEeeccC--------------CcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEee
Confidence 4789999998887766532 12222222222 344 444432 211122357999999888877764
Q ss_pred cCCCCCCCCcceEEEEE-CCE-EEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEc-CCEEEEEe
Q 008260 289 TYGKPPVSRGGQSVTLV-GTS-LVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFG 365 (572)
Q Consensus 289 ~~g~~p~~R~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~-~~~lyv~G 365 (572)
.. .+ .......+.. +++ |++. ...... ....++++|+.+.+...+... +. +...... ++.++++.
T Consensus 233 ~~--~~-~~~~~~~~~spdg~~l~~~-~~~~~~-~~~~l~~~d~~~g~~~~l~~~---~~----~~~~~s~~dg~~l~~~ 300 (396)
T 3c5m_A 233 EH--AE-GESCTHEFWIPDGSAMAYV-SYFKGQ-TDRVIYKANPETLENEEVMVM---PP----CSHLMSNFDGSLMVGD 300 (396)
T ss_dssp CC--CT-TEEEEEEEECTTSSCEEEE-EEETTT-CCEEEEEECTTTCCEEEEEEC---CS----EEEEEECSSSSEEEEE
T ss_pred cc--CC-CccccceEECCCCCEEEEE-ecCCCC-ccceEEEEECCCCCeEEeeeC---CC----CCCCccCCCCceEEEe
Confidence 21 11 1111122222 344 4444 322211 123499999998887776543 21 1233334 55466665
Q ss_pred CCCC-----------CcCcCcEEEEECCCCcEEeec
Q 008260 366 GGSH-----------AACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 366 G~~~-----------~~~~~~v~~yd~~t~~W~~v~ 390 (572)
+... ......++++|+.+.+...+.
T Consensus 301 ~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 301 GCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp ECCC----------CCCCCCEEEEEETTTTBCCEEE
T ss_pred cCCcceeeccccccccCCCCcEEEEecccCceEEcc
Confidence 4221 012257999999887766553
No 133
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=91.52 E-value=20 Score=39.86 Aligned_cols=151 Identities=11% Similarity=0.083 Sum_probs=86.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCc-ceeEE-EeCCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCA-GHSLI-PWENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~-~hs~~-~~~~~iyv~GG~~~~~~~~~ 272 (572)
++.|||... +.+.+||+.+.+........ ..+.. -.+++ .-++.||+... .
T Consensus 98 ~g~lWigT~-------~Gl~~yd~~~~~f~~~~~~~------------~~~~~~i~~i~~d~~g~lwi~t~--------~ 150 (795)
T 4a2l_A 98 QGRVWIGTR-------DGLSRYDEEKDIFQNFFYEK------------NGKHLQVNGIEEISPEQLLISTP--------E 150 (795)
T ss_dssp TSCEEEEES-------SCEEEEETTTTEEEEECCEE------------TTEECCCCEEEEEETTEEEEEET--------T
T ss_pred CCCEEEEeC-------CchheeCCCCCeEEeccccc------------cCCCceEEEEEECCCCCEEEEEC--------C
Confidence 467886432 35899999999887764321 00000 11222 23788887542 2
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEE-ECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
.+++||+.+.++..+.. ..+....-.+... .++.|||. .. .+.+++||+.+.++..+... +....-.
T Consensus 151 gl~~~~~~~~~~~~~~~--~~~~~~~i~~i~~d~~g~lwig-t~------~~Gl~~~~~~~~~~~~~~~~---~~~~~i~ 218 (795)
T 4a2l_A 151 GLIMFDIKESKFIDDSF--STAMHKTIASTLYRQGDQIYIG-TS------TDGLYTYSITQKTFEKVIPI---LGTKQIQ 218 (795)
T ss_dssp EEEEEETTTTEEECSSS--CHHHHTCCEEEEEEETTEEEEE-ES------SSCEEEEETTTCCEEECC-------CCCEE
T ss_pred ceEEEECCCCEEEeccC--CCCCCcceEEEEECCCCCEEEE-EC------CCCEEEEeCCCCeEEEecCC---CCCCeeE
Confidence 58999999888776542 1111110122233 37788873 21 13589999999998876422 1122223
Q ss_pred EEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 352 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
+.+...++.|+|.. .. +.+++||+.+.+++...
T Consensus 219 ~i~~d~~g~lwigt-~~-----~Gl~~~~~~~~~~~~~~ 251 (795)
T 4a2l_A 219 AILQQSPTRIWVAT-EG-----AGLFLINPKTKEIKNYL 251 (795)
T ss_dssp EEEEEETTEEEEEE-BS-----SCEEEEETTTTEEEEEC
T ss_pred EEEEcCCCCEEEEE-CC-----CCeEEEeCCCCeEEEee
Confidence 33444556677743 11 35899999999888764
No 134
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=91.49 E-value=2.8 Score=41.67 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=56.0
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE----CCEEEEEecCCCCCCCCCceEEEEC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV----GTSLVIFGGEDAKRSLLNDLHILDL 330 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~ 330 (572)
++.+++.|+.+. .+.+||+.+.+-..... .+.. ..+.... ++.+++.|+.+ ..+.+||+
T Consensus 111 ~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~ 173 (408)
T 4a11_B 111 DTGMFTSSSFDK------TLKVWDTNTLQTADVFN---FEET--VYSHHMSPVSTKHCLVAVGTRG------PKVQLCDL 173 (408)
T ss_dssp CTTCEEEEETTS------EEEEEETTTTEEEEEEE---CSSC--EEEEEECSSCSSCCEEEEEESS------SSEEEEES
T ss_pred CCcEEEEEeCCC------eEEEeeCCCCccceecc---CCCc--eeeeEeecCCCCCcEEEEEcCC------CeEEEEeC
Confidence 455777777643 58899988876544432 1111 1222222 33477777653 35889998
Q ss_pred CCCcEEEeeCCCCCCCcccceEEEEEcC-CEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 331 ~t~~W~~v~~~g~~p~~R~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
.+..-...-.. ....-.+.+...+ ..+++.|+.+ ..+..||+.+.
T Consensus 174 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~ll~~~~~d-----g~i~i~d~~~~ 219 (408)
T 4a11_B 174 KSGSCSHILQG----HRQEILAVSWSPRYDYILATASAD-----SRVKLWDVRRA 219 (408)
T ss_dssp SSSCCCEEECC----CCSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTCS
T ss_pred CCcceeeeecC----CCCcEEEEEECCCCCcEEEEEcCC-----CcEEEEECCCC
Confidence 76643222111 1111223333333 3377788754 45888888654
No 135
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=91.48 E-value=3.1 Score=43.43 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=39.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeE
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v 274 (572)
++++|+|-| +..|+||..+++..... -+.+ +.. -++...++++|+|-|. ..
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~-----------w~gi--~~i-DAA~~~~g~~YfFkG~--------~y 208 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERS-----------WPAV--GNC-TSALRWLGRYYCFQGN--------QF 208 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEEC-----------CTTS--CCC-SEEEEETTEEEEEETT--------EE
T ss_pred CCeEEEEec-------ccEEEEecccceeeccc-----------CCCC--Ccc-chheeeCCceEEEECC--------EE
Confidence 678899988 46899999887654211 1111 222 3455567999999885 56
Q ss_pred EEEECCCC
Q 008260 275 KVFDLQTC 282 (572)
Q Consensus 275 ~~yd~~~~ 282 (572)
+.||..+.
T Consensus 209 ~rfd~~~~ 216 (460)
T 1qhu_A 209 LRFNPVSG 216 (460)
T ss_dssp EEECTTTC
T ss_pred EEEcCccC
Confidence 77887553
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=91.44 E-value=9.4 Score=40.66 Aligned_cols=202 Identities=12% Similarity=0.163 Sum_probs=97.9
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEc--CCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-----CCEEE
Q 008260 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDL--RSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-----ENKLL 259 (572)
Q Consensus 189 ~s~~~~--~~~lyv~GG~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-----~~~iy 259 (572)
|+++.. +..||+.+. . +.+.+||+ .+.+- +.... ....-+.++.. +++..
T Consensus 182 ~~v~~spdg~~l~v~~~-d-----~~V~v~D~~~~t~~~--~~~i~-------------~g~~p~~va~sp~~~~dg~~l 240 (543)
T 1nir_A 182 HISRMSASGRYLLVIGR-D-----ARIDMIDLWAKEPTK--VAEIK-------------IGIEARSVESSKFKGYEDRYT 240 (543)
T ss_dssp EEEEECTTSCEEEEEET-T-----SEEEEEETTSSSCEE--EEEEE-------------CCSEEEEEEECCSTTCTTTEE
T ss_pred ceEEECCCCCEEEEECC-C-----CeEEEEECcCCCCcE--EEEEe-------------cCCCcceEEeCCCcCCCCCEE
Confidence 444443 356676653 1 67999999 55443 22221 11111222322 45444
Q ss_pred EEeccCCCCCcceeEEEEECCCCceEE-eccCCC-------CCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEEC
Q 008260 260 SIAGHTKDPSEIIQVKVFDLQTCSWST-LKTYGK-------PPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDL 330 (572)
Q Consensus 260 v~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~g~-------~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~ 330 (572)
++++... ..+.++|..+.+-.. ++..+. .|.+|....+..- +..+|+.... .+.++++|.
T Consensus 241 ~v~~~~~-----~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------~g~i~vvd~ 309 (543)
T 1nir_A 241 IAGAYWP-----PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNY 309 (543)
T ss_dssp EEEEEES-----SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEEC
T ss_pred EEEEccC-----CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------CCeEEEEEe
Confidence 4444332 368888987765333 222110 0122222222222 4456555432 356999998
Q ss_pred CCCcEEEeeCCCCCCCcccceEEEEEcCC-EEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECC
Q 008260 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGE 409 (572)
Q Consensus 331 ~t~~W~~v~~~g~~p~~R~~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~ 409 (572)
.+.+-..+... +..+.-+..+...++ ++|+.+..+ +.|.++|+.+.+-...-..+..|.+..+.. ....+
T Consensus 310 ~~~~~l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~-----~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~-~~~p~ 380 (543)
T 1nir_A 310 KDIDNLTVTSI---GAAPFLHDGGWDSSHRYFMTAANNS-----NKVAVIDSKDRRLSALVDVGKTPHPGRGAN-FVHPK 380 (543)
T ss_dssp TTSSSCEEEEE---ECCSSCCCEEECTTSCEEEEEEGGG-----TEEEEEETTTTEEEEEEECSSSBCCTTCEE-EEETT
T ss_pred cCCCcceeEEe---ccCcCccCceECCCCCEEEEEecCC-----CeEEEEECCCCeEEEeeccCCCCCCCCCcc-cCCCC
Confidence 76432111111 122333445555444 455554322 578899999987655433344555433322 22332
Q ss_pred ccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCC
Q 008260 410 NWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSH 449 (572)
Q Consensus 410 ~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~ 449 (572)
.+.+|+.+... .+.|-++|..+
T Consensus 381 ---------------~g~~~~s~~~~---d~~V~v~d~~~ 402 (543)
T 1nir_A 381 ---------------YGPVWSTSHLG---DGSISLIGTDP 402 (543)
T ss_dssp ---------------TEEEEEEEBSS---SSEEEEEECCT
T ss_pred ---------------CccEEEeccCC---CceEEEEEeCC
Confidence 23677766432 13577888766
No 137
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=91.40 E-value=2.8 Score=40.79 Aligned_cols=156 Identities=7% Similarity=-0.020 Sum_probs=85.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~ 273 (572)
+++||+.+.. ...+++||+.+.+...+... ....-++++.. ++++|+...... .....
T Consensus 55 ~g~l~~~~~~-----~~~i~~~d~~~~~~~~~~~~--------------~~~~~~~i~~~~dg~l~v~~~~~~--~~~~~ 113 (333)
T 2dg1_A 55 QGQLFLLDVF-----EGNIFKINPETKEIKRPFVS--------------HKANPAAIKIHKDGRLFVCYLGDF--KSTGG 113 (333)
T ss_dssp TSCEEEEETT-----TCEEEEECTTTCCEEEEEEC--------------SSSSEEEEEECTTSCEEEEECTTS--SSCCE
T ss_pred CCCEEEEECC-----CCEEEEEeCCCCcEEEEeeC--------------CCCCcceEEECCCCcEEEEeCCCC--CCCce
Confidence 5678887652 13699999999888765421 11112233332 678888754321 12247
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceE
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~ 352 (572)
+++||+.+.....+... ......-...++. ++++|+.............++++|+++.+...+... .....+
T Consensus 114 i~~~d~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~ 186 (333)
T 2dg1_A 114 IFAATENGDNLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-----ISVANG 186 (333)
T ss_dssp EEEECTTSCSCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-----ESSEEE
T ss_pred EEEEeCCCCEEEEEEcc--CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-----CCcccc
Confidence 99999988776643211 1111222223333 567887543221111235699999887776655321 111233
Q ss_pred EEEEcC-CEEEEEeCCCCCcCcCcEEEEECCC
Q 008260 353 AAVHAE-RYLLIFGGGSHAACFNDLHVLDLQT 383 (572)
Q Consensus 353 ~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t 383 (572)
.+...+ +.||+.... .+.+++||+.+
T Consensus 187 i~~~~dg~~l~v~~~~-----~~~i~~~d~~~ 213 (333)
T 2dg1_A 187 IALSTDEKVLWVTETT-----ANRLHRIALED 213 (333)
T ss_dssp EEECTTSSEEEEEEGG-----GTEEEEEEECT
T ss_pred eEECCCCCEEEEEeCC-----CCeEEEEEecC
Confidence 444444 357776532 24689999853
No 138
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=91.35 E-value=12 Score=36.93 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=59.4
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++.+++.|+.+. .+.+||+.+.+....-. . ....-.+++.. ++.+++.|+.++ .+.+||+.+.
T Consensus 209 ~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~~---~-h~~~v~~v~~~p~~~~l~s~s~D~------~v~lwd~~~~ 272 (354)
T 2pbi_B 209 TGNTFVSGGCDK------KAMVWDMRSGQCVQAFE---T-HESDVNSVRYYPSGDAFASGSDDA------TCRLYDLRAD 272 (354)
T ss_dssp SCCEEEEEETTS------CEEEEETTTCCEEEEEC---C-CSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTT
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEec---C-CCCCeEEEEEeCCCCEEEEEeCCC------eEEEEECCCC
Confidence 357788888764 48899988876543321 0 11111222222 456777777643 4888998876
Q ss_pred cEEEeeCCCCCCCcccce-EEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 334 TWDEIDAVGVPPSPRSDH-AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
.-..+-.. ....... ++....++.+++.|+.+ ..+.+||..+.+
T Consensus 273 ~~~~~~~~---~~~~~~~~~~~~s~~g~~l~~g~~d-----~~i~vwd~~~~~ 317 (354)
T 2pbi_B 273 REVAIYSK---ESIIFGASSVDFSLSGRLLFAGYND-----YTINVWDVLKGS 317 (354)
T ss_dssp EEEEEECC---TTCCSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCS
T ss_pred cEEEEEcC---CCcccceeEEEEeCCCCEEEEEECC-----CcEEEEECCCCc
Confidence 53333221 1112222 33333455577777754 468899987654
No 139
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=91.31 E-value=12 Score=36.67 Aligned_cols=146 Identities=12% Similarity=-0.011 Sum_probs=77.6
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEE-EeCCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLI-PWENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~-~~~~~iyv~GG~~~~~~~~~~ 273 (572)
++.+|+++-. -..+++||+.+++...+.. + .. -++++ .-++++|+... ..
T Consensus 60 ~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~--------------~-~~-v~~i~~~~dg~l~v~~~--------~g 110 (326)
T 2ghs_A 60 SGTAWWFNIL-----ERELHELHLASGRKTVHAL--------------P-FM-GSALAKISDSKQLIASD--------DG 110 (326)
T ss_dssp TTEEEEEEGG-----GTEEEEEETTTTEEEEEEC--------------S-SC-EEEEEEEETTEEEEEET--------TE
T ss_pred CCEEEEEECC-----CCEEEEEECCCCcEEEEEC--------------C-Cc-ceEEEEeCCCeEEEEEC--------CC
Confidence 3678888642 2469999999877654421 1 11 12222 23788877641 24
Q ss_pred EEEEECCCCceEEeccCCC-CCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 274 VKVFDLQTCSWSTLKTYGK-PPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~-~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
+++||+.+.+.+.+..... .+..+. ...++. ++++|+.............+++|| +.+...+... .....
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~~~~~-~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~-----~~~~~ 182 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLPGNRS-NDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD-----ISIPN 182 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEE-EEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE-----ESSEE
T ss_pred EEEEECCCCcEEEEeeCCCCCCCCCC-CCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC-----CcccC
Confidence 9999999988877753211 111111 122222 567776432111111245789998 4565554321 01112
Q ss_pred EEEEEcC-CEEEEEeCCCCCcCcCcEEEEECC
Q 008260 352 AAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQ 382 (572)
Q Consensus 352 ~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~ 382 (572)
+.+...+ +.||+.... .+.|++||..
T Consensus 183 ~i~~s~dg~~lyv~~~~-----~~~I~~~d~~ 209 (326)
T 2ghs_A 183 SICFSPDGTTGYFVDTK-----VNRLMRVPLD 209 (326)
T ss_dssp EEEECTTSCEEEEEETT-----TCEEEEEEBC
T ss_pred CeEEcCCCCEEEEEECC-----CCEEEEEEcc
Confidence 3344434 367776532 2579999975
No 140
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=91.02 E-value=3.6 Score=40.05 Aligned_cols=121 Identities=5% Similarity=-0.090 Sum_probs=69.2
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
+++||+.+... ..|++||+.+.+...+... ....-++++.. ++++|+....+.. ....+++||+++.
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGD 122 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSC
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEeeC----CCCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCC
Confidence 57788876543 3699999998888776421 11222334443 5678877543211 1256999999888
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCC-CCcCcCcEEEEECCCCcEEee
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS-HAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~v 389 (572)
....+... ......-...++..++.+|+..... .......++++|+.+.+...+
T Consensus 123 ~~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 123 NLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp SCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred EEEEEEcc--CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 76643221 0112222344444566688754321 111234699999887776655
No 141
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=90.98 E-value=6.5 Score=37.82 Aligned_cols=150 Identities=12% Similarity=0.098 Sum_probs=76.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeE
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v 274 (572)
++++++.|+.+ ..+..++............. ...........++..++.|+.+. .+
T Consensus 97 dg~~l~s~~~d-----~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~s~s~d~------~~ 152 (340)
T 4aow_A 97 DGQFALSGSWD-----GTLRLWDLTTGTTTRRFVGH-------------TKDVLSVAFSSDNRQIVSGSRDK------TI 152 (340)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEECC-------------SSCEEEEEECTTSSCEEEEETTS------CE
T ss_pred CCCEEEEEccc-----ccceEEeecccceeeeecCC-------------CCceeEEEEeecCccceeecCCC------eE
Confidence 45666666632 24677787776655443321 11111112222456666776654 36
Q ss_pred EEEECCCCceEEeccCCCCCCCCcceEEEEE----CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccc
Q 008260 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV----GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (572)
Q Consensus 275 ~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~ 350 (572)
.++|.....-...... ..........+ .+.+++.|+.+ ..+.+||+.+.+-...-.. ....-
T Consensus 153 ~~~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~s~~~d------~~i~i~d~~~~~~~~~~~~----h~~~v 218 (340)
T 4aow_A 153 KLWNTLGVCKYTVQDE----SHSEWVSCVRFSPNSSNPIIVSCGWD------KLVKVWNLANCKLKTNHIG----HTGYL 218 (340)
T ss_dssp EEECTTSCEEEEECSS----SCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTTEEEEEECC----CSSCE
T ss_pred EEEEeCCCceEEEEec----cccCcccceEEccCCCCcEEEEEcCC------CEEEEEECCCCceeeEecC----CCCcE
Confidence 6777765543333211 11111122222 23466666653 3488899887765433211 11122
Q ss_pred eEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 351 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
.+++...++.+++.|+.+ ..+.+||+.+..-.
T Consensus 219 ~~~~~s~~~~~l~s~s~D-----g~i~iwd~~~~~~~ 250 (340)
T 4aow_A 219 NTVTVSPDGSLCASGGKD-----GQAMLWDLNEGKHL 250 (340)
T ss_dssp EEEEECTTSSEEEEEETT-----CEEEEEETTTTEEE
T ss_pred EEEEECCCCCEEEEEeCC-----CeEEEEEeccCcee
Confidence 334444555688888765 46888998876543
No 142
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=90.97 E-value=0.49 Score=47.24 Aligned_cols=109 Identities=11% Similarity=0.183 Sum_probs=54.7
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcc-eEEEEE-CCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGG-QSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
++.+++.|+.+. .+.+||+.+..|..+... ...... .++... ++.+++.|+.+ ..+.+||+.+
T Consensus 22 ~g~~l~~~~~d~------~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~ 86 (377)
T 3dwl_C 22 QRTEFVTTTATN------QVELYEQDGNGWKHARTF---SDHDKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRP 86 (377)
T ss_dssp SSSEEECCCSSS------CBCEEEEETTEEEECCCB---CCCSSCEEEEEECTTTCCEEEEETT------SSEEEC----
T ss_pred CCCEEEEecCCC------EEEEEEccCCceEEEEEE---ecCCceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCC
Confidence 566777776653 478888888888777532 211112 222332 45677777754 3488888887
Q ss_pred Cc-EEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 333 MT-WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 333 ~~-W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
.. |....... .....-.+++...++.+++.|+.+ ..+.+||+.+.+
T Consensus 87 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 133 (377)
T 3dwl_C 87 DGTWKQTLVLL--RLNRAATFVRWSPNEDKFAVGSGA-----RVISVCYFEQEN 133 (377)
T ss_dssp --CCCCEEECC--CCSSCEEEEECCTTSSCCEEEESS-----SCEEECCC----
T ss_pred CCceeeeeEec--ccCCceEEEEECCCCCEEEEEecC-----CeEEEEEECCcc
Confidence 76 54443221 112222233333455577777754 357788877654
No 143
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=90.92 E-value=11 Score=38.23 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=71.5
Q ss_pred cEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcceeEEEEECCCCceEEecc
Q 008260 212 DMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (572)
Q Consensus 212 ~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 289 (572)
.|+++|..+++-..+-... .....-.++.+ ++.+++.|+.+. .|.+||+.+.+-.....
T Consensus 126 tV~lWd~~tg~~~~~~~~~-------------~~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~~~ 186 (420)
T 4gga_A 126 SVYLWSASSGDILQLLQME-------------QPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNMT 186 (420)
T ss_dssp EEEEEETTTCCEEEEEECC-------------STTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEec-------------CCCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEEEe
Confidence 6888898888766554332 11112223333 677788888765 48899998876433321
Q ss_pred CCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCC
Q 008260 290 YGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH 369 (572)
Q Consensus 290 ~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~ 369 (572)
.... ...+...++.+++.|+.+ ..+..+|..+......... .............++..++.|+.+
T Consensus 187 ---~h~~--~v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~---~h~~~~~~~~~~~~g~~l~s~~~D- 251 (420)
T 4gga_A 187 ---SHSA--RVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLS---GHSQEVCGLRWAPDGRHLASGGND- 251 (420)
T ss_dssp ---CCSS--CEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEE---CCSSCEEEEEECTTSSEEEEEETT-
T ss_pred ---CCCC--ceEEEeeCCCEEEEEeCC------CceeEeeecccceeeEEec---ccccceeeeeecCCCCeeeeeecc-
Confidence 1111 223344466677777754 3467777665443222111 111122223333344466777654
Q ss_pred CcCcCcEEEEECCCC
Q 008260 370 AACFNDLHVLDLQTM 384 (572)
Q Consensus 370 ~~~~~~v~~yd~~t~ 384 (572)
+.+.++|..+.
T Consensus 252 ----~~v~i~~~~~~ 262 (420)
T 4gga_A 252 ----NLVNVWPSAPG 262 (420)
T ss_dssp ----SCEEEEESSCC
T ss_pred ----ccceEEeeccc
Confidence 45677776654
No 144
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=90.90 E-value=6.4 Score=39.02 Aligned_cols=112 Identities=10% Similarity=0.073 Sum_probs=66.3
Q ss_pred EEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEEC--CEEEEEecCCCCCCCCCceEEEECCCCc
Q 008260 257 KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVG--TSLVIFGGEDAKRSLLNDLHILDLETMT 334 (572)
Q Consensus 257 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~--~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 334 (572)
.+++.|+.+. .|.+||..+.+....... ......-.+++... +.+++.|+.+ ..+.++|+.+..
T Consensus 87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~ 152 (383)
T 3ei3_B 87 TTVAVGSKGG------DIILWDYDVQNKTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSV 152 (383)
T ss_dssp TEEEEEEBTS------CEEEEETTSTTCEEEECC--CSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCE
T ss_pred CEEEEEcCCC------eEEEEeCCCcccceeeec--CCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCc
Confidence 6777777654 588999988776655421 01122223344443 4677777653 358899999877
Q ss_pred EEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 335 WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 335 W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
...+.... .....-.+++...++.+++.|+.+ ..+..||+....-..+
T Consensus 153 ~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~ 200 (383)
T 3ei3_B 153 IQVFAKTD--SWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKE 200 (383)
T ss_dssp EEEEECCC--CSSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEE
T ss_pred eEEEeccC--CCCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEe
Confidence 76665431 111223344445555577777754 5788999865544444
No 145
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=90.85 E-value=3 Score=41.46 Aligned_cols=153 Identities=12% Similarity=0.152 Sum_probs=76.3
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
++.+++.|+.+ ..+.+||+.+.+-....... .+......... ++.+++.|+.+.
T Consensus 111 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~------ 166 (408)
T 4a11_B 111 DTGMFTSSSFD-----KTLKVWDTNTLQTADVFNFE-------------ETVYSHHMSPVSTKHCLVAVGTRGP------ 166 (408)
T ss_dssp CTTCEEEEETT-----SEEEEEETTTTEEEEEEECS-------------SCEEEEEECSSCSSCCEEEEEESSS------
T ss_pred CCcEEEEEeCC-----CeEEEeeCCCCccceeccCC-------------CceeeeEeecCCCCCcEEEEEcCCC------
Confidence 34566666632 35889998887655443321 11111111111 345777777654
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCc--EEEeeCCC-----C
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEIDAVG-----V 343 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~v~~~g-----~ 343 (572)
.+.+||+.+.+-...-. .....-.+++.. +..+++.|+.++ .+.+||+.+.. ...+.... .
T Consensus 167 ~v~~~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~ 236 (408)
T 4a11_B 167 KVQLCDLKSGSCSHILQ----GHRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGKKSQA 236 (408)
T ss_dssp SEEEEESSSSCCCEEEC----CCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred eEEEEeCCCcceeeeec----CCCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCccccccccccccccee
Confidence 58889987654322211 011111223333 233777887543 48888886543 22221100 0
Q ss_pred -----CCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcE
Q 008260 344 -----PPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (572)
Q Consensus 344 -----~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W 386 (572)
......-.+++...++..++.|+.+ ..+.+||+.+.+-
T Consensus 237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~ 279 (408)
T 4a11_B 237 VESANTAHNGKVNGLCFTSDGLHLLTVGTD-----NRMRLWNSSNGEN 279 (408)
T ss_dssp TTTSSCSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCB
T ss_pred eccccccccCceeEEEEcCCCCEEEEecCC-----CeEEEEECCCCcc
Confidence 0111122233444455567777754 4588999887653
No 146
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.80 E-value=5.9 Score=43.90 Aligned_cols=147 Identities=9% Similarity=0.004 Sum_probs=76.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~ 273 (572)
++.++++|+. -..+.+||..+.+....-... ... -.+++. -++..++.|+.++ .
T Consensus 24 ~~~~la~~~~-----~g~v~iwd~~~~~~~~~~~~~-------------~~~-v~~~~~s~~~~~l~~~~~dg------~ 78 (814)
T 3mkq_A 24 TEPWVLTTLY-----SGRVEIWNYETQVEVRSIQVT-------------ETP-VRAGKFIARKNWIIVGSDDF------R 78 (814)
T ss_dssp SSSEEEEEET-----TSEEEEEETTTTEEEEEEECC-------------SSC-EEEEEEEGGGTEEEEEETTS------E
T ss_pred CCCEEEEEeC-----CCEEEEEECCCCceEEEEecC-------------CCc-EEEEEEeCCCCEEEEEeCCC------e
Confidence 3555666662 236889998887654332210 111 112222 2566777777643 6
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC-cEEEeeCCCCCCCcccce
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM-TWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~v~~~g~~p~~R~~~ 351 (572)
+.+||..+.+....-.. ....-.+++.. ++..++.|+.+ ..+.+||+.+. .....-.. ....-.
T Consensus 79 i~vw~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~----~~~~v~ 144 (814)
T 3mkq_A 79 IRVFNYNTGEKVVDFEA----HPDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFEG----HEHFVM 144 (814)
T ss_dssp EEEEETTTCCEEEEEEC----CSSCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEEC----CSSCEE
T ss_pred EEEEECCCCcEEEEEec----CCCCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEcC----CCCcEE
Confidence 89999888765443211 11112223332 45555666643 35888998765 33222111 112223
Q ss_pred EEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 352 AAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 352 ~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
+++... ++.+++.|+.+ ..+.+||+.+.+
T Consensus 145 ~~~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~ 174 (814)
T 3mkq_A 145 CVAFNPKDPSTFASGCLD-----RTVKVWSLGQST 174 (814)
T ss_dssp EEEEETTEEEEEEEEETT-----SEEEEEETTCSS
T ss_pred EEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Confidence 334443 45677887754 468889986543
No 147
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=90.79 E-value=8.4 Score=40.71 Aligned_cols=153 Identities=9% Similarity=0.087 Sum_probs=72.9
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCC------ceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEE
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTC------SWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHI 327 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~------~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 327 (572)
++++++.|+.++ .+.+||..+. ....+..... ....-.+++.. +++.++.+|.+... ...++.
T Consensus 77 ~~~~l~s~~~dg------~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~--~~~v~~ 146 (615)
T 1pgu_A 77 GSQYLCSGDESG------KVIVWGWTFDKESNSVEVNVKSEFQV--LAGPISDISWDFEGRRLCVVGEGRDN--FGVFIS 146 (615)
T ss_dssp TCCEEEEEETTS------EEEEEEEEEEGGGTEEEEEEEEEEEC--CSSCEEEEEECTTSSEEEEEECCSSC--SEEEEE
T ss_pred CCCEEEEecCCC------EEEEEeCCCCcccccccccccchhhc--ccccEEEEEEeCCCCEEEEeccCCCC--ccEEEE
Confidence 567777777643 5778887544 3333321101 11112223332 45566666654332 345677
Q ss_pred EECCCCcEEEeeCCCCCCCcccceEEEEEcCC-EEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCc--cccEE
Q 008260 328 LDLETMTWDEIDAVGVPPSPRSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPR--AGHAG 404 (572)
Q Consensus 328 yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R--~~~~~ 404 (572)
+|... .-..+. .....-.++....++ .+++.|+.+ ..+.+||..+.+-...-. .... ....+
T Consensus 147 ~d~~~-~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d-----~~v~vwd~~~~~~~~~~~----~~~~~~~~v~~ 211 (615)
T 1pgu_A 147 WDSGN-SLGEVS-----GHSQRINACHLKQSRPMRSMTVGDD-----GSVVFYQGPPFKFSASDR----THHKQGSFVRD 211 (615)
T ss_dssp TTTCC-EEEECC-----SCSSCEEEEEECSSSSCEEEEEETT-----TEEEEEETTTBEEEEEEC----SSSCTTCCEEE
T ss_pred EECCC-cceeee-----cCCccEEEEEECCCCCcEEEEEeCC-----CcEEEEeCCCcceeeeec----ccCCCCceEEE
Confidence 66322 111121 111222233333343 367777754 568889987765433211 0111 01222
Q ss_pred EEECCccccceeeeeeccCCC-CEEEEEcCCCCCccCcEEEEeCCCCc
Q 008260 405 VTIGENWFLGLSLVVSSYSGE-DVIVAFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 405 ~~~~~~~~iG~s~~~~~~~g~-~~l~v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
+.+.. . +.+++.|+.++. +.+||+.+..
T Consensus 212 ~~~~~---------------~~~~~l~~~~~dg~----i~vwd~~~~~ 240 (615)
T 1pgu_A 212 VEFSP---------------DSGEFVITVGSDRK----ISCFDGKSGE 240 (615)
T ss_dssp EEECS---------------TTCCEEEEEETTCC----EEEEETTTCC
T ss_pred EEECC---------------CCCCEEEEEeCCCe----EEEEECCCCC
Confidence 33321 2 367777876654 7888876653
No 148
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=90.73 E-value=7 Score=38.70 Aligned_cols=158 Identities=13% Similarity=0.041 Sum_probs=78.3
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceEEecc
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 289 (572)
..++++|+.+.+-..+... .....+....- +++.+++............++.+|+.......+..
T Consensus 168 ~~l~~~d~~~g~~~~l~~~--------------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 233 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQE--------------NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT 233 (388)
T ss_dssp EEEEEEETTTCCEEEEEEE--------------SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC
T ss_pred ceEEEEECCCCceEEeecC--------------CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee
Confidence 5799999999876666532 22233333333 55555444433222335689999998877666642
Q ss_pred CCCCCCCCcceEEEEE-CC-EEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcc-----cceEEEEEcCCEEE
Q 008260 290 YGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPR-----SDHAAAVHAERYLL 362 (572)
Q Consensus 290 ~g~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R-----~~~~~~~~~~~~ly 362 (572)
..........+.. ++ .|++.....+. ....++++|+.+.+-+.+... +... .......-.++.|+
T Consensus 234 ---~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~~~l~~~d~~~g~~~~l~~~---~~~~~~~~~~~~~~~spdg~~l~ 305 (388)
T 3pe7_A 234 ---HAEGESCTHEFWVPDGSALVYVSYLKGS--PDRFIYSADPETLENRQLTSM---PACSHLMSNYDGSLMVGDGSDAP 305 (388)
T ss_dssp ---CCTTEEEEEEEECTTSSCEEEEEEETTC--CCEEEEEECTTTCCEEEEEEE---CCEEEEEECTTSSEEEEEECCC-
T ss_pred ---CCCCcccccceECCCCCEEEEEecCCCC--CcceEEEEecCCCceEEEEcC---CCceeeeecCCCCeEccCCCcce
Confidence 1111111122222 34 45444332221 112499999999887666543 1100 00001122223233
Q ss_pred EEe----CCCCCcCcCcEEEEECCCCcEEeecc
Q 008260 363 IFG----GGSHAACFNDLHVLDLQTMEWSRPTQ 391 (572)
Q Consensus 363 v~G----G~~~~~~~~~v~~yd~~t~~W~~v~~ 391 (572)
+.- |+. ......|+++|+.+.+-+.+..
T Consensus 306 ~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~l~~ 337 (388)
T 3pe7_A 306 VDVQDDSGYK-IENDPFLYVFNMKNGTQHRVAR 337 (388)
T ss_dssp ------------CCCCEEEEEETTTTEEEEEEE
T ss_pred eEeeeccccc-cCCCCEEEEEeccCCceEEecc
Confidence 221 011 0112579999999988777643
No 149
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=90.58 E-value=16 Score=40.11 Aligned_cols=170 Identities=10% Similarity=0.011 Sum_probs=87.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCC------
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKD------ 267 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~------ 267 (572)
+++.++++....+.....++++|+.+.+........ .. ....+.. +++.++++.....
T Consensus 135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--------------~~-~~~~~wspDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--------------VK-FSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--------------EC-SCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--------------cc-cceEEEEeCCCEEEEEEECCccccccc
Confidence 455555544323332347999999999887643211 11 1122222 5544444443322
Q ss_pred ----CCcceeEEEEECCCCceE--EeccCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCCCCCceEEEECCC------C
Q 008260 268 ----PSEIIQVKVFDLQTCSWS--TLKTYGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLET------M 333 (572)
Q Consensus 268 ----~~~~~~v~~yd~~~~~W~--~~~~~g~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t------~ 333 (572)
......|+++++.+.+.. .+.. ....+......... ++ .|++....... ..++++++|+.+ .
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAE--FPDEPKWMGGAELSDDGRYVLLSIREGCD--PVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECSSS--SCCEEEEEEGGGSSSSSCS
T ss_pred cccccCCCCEEEEEECCCCcccceEEec--cCCCCeEEEEEEEcCCCCEEEEEEEccCC--CccEEEEEECcccccccCC
Confidence 022456899999887643 2211 11112222233333 33 45544332211 146899999876 3
Q ss_pred --cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC---cEEeec
Q 008260 334 --TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM---EWSRPT 390 (572)
Q Consensus 334 --~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~---~W~~v~ 390 (572)
.+..+... ... ........++.||+.+..+ .....|+++|+.+. .|+.+.
T Consensus 276 ~~~~~~l~~~----~~~-~~~~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~ 330 (710)
T 2xdw_A 276 ILKWVKLIDN----FEG-EYDYVTNEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVLV 330 (710)
T ss_dssp SCCCEEEECS----SSS-CEEEEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEE
T ss_pred ccceEEeeCC----CCc-EEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCCcccceecc
Confidence 58777543 111 1223334566788876532 22357999998875 588774
No 150
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=90.55 E-value=5.6 Score=43.72 Aligned_cols=127 Identities=13% Similarity=0.035 Sum_probs=62.6
Q ss_pred CCEEEEEccC-CCCcccCcEEEEEcCCCcEEEeeecccccCC----CCC-CCCCCCCC----c-ceeEE-EeCCEEEEEe
Q 008260 195 QDKMYIYGGN-HNGRYLSDMHILDLRSWAWSKIQAKAVAEST----ESP-SPALLTPC----A-GHSLI-PWENKLLSIA 262 (572)
Q Consensus 195 ~~~lyv~GG~-~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~----~~~-~~~~p~~R----~-~hs~~-~~~~~iyv~G 262 (572)
+++.+++++. .++....+++++|+.+.+...+.......+. ... .......| . -...+ .-+++.++++
T Consensus 47 dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~ 126 (741)
T 2ecf_A 47 DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFP 126 (741)
T ss_dssp TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEE
T ss_pred CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEE
Confidence 4555555553 3333345899999999888766543210000 000 00000000 0 01112 2256555555
Q ss_pred ccCCCCCcceeEEEEECCCC---ceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEe
Q 008260 263 GHTKDPSEIIQVKVFDLQTC---SWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEI 338 (572)
Q Consensus 263 G~~~~~~~~~~v~~yd~~~~---~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v 338 (572)
.. ..++++|+.+. +-..+.. ........+.. +++.++++.. +.++++|+.+.+...+
T Consensus 127 ~~-------~~i~~~d~~~~~~~~~~~l~~-----~~~~~~~~~~SPDG~~la~~~~-------~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 127 LG-------GELYLYDLKQEGKAAVRQLTH-----GEGFATDAKLSPKGGFVSFIRG-------RNLWVIDLASGRQMQL 187 (741)
T ss_dssp ET-------TEEEEEESSSCSTTSCCBCCC-----SSSCEEEEEECTTSSEEEEEET-------TEEEEEETTTTEEEEC
T ss_pred eC-------CcEEEEECCCCCcceEEEccc-----CCcccccccCCCCCCEEEEEeC-------CcEEEEecCCCCEEEe
Confidence 43 57999999887 5444431 11112222222 4554445431 3699999998887766
Q ss_pred eC
Q 008260 339 DA 340 (572)
Q Consensus 339 ~~ 340 (572)
..
T Consensus 188 ~~ 189 (741)
T 2ecf_A 188 TA 189 (741)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 151
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=90.52 E-value=10 Score=34.81 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=82.8
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCC
Q 008260 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDP 268 (572)
Q Consensus 190 s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~ 268 (572)
+++.+.+++|+|=| ..+|+++.....+....... . -+.+| .....+.... ++++|+|-|.
T Consensus 28 Ai~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~----~---wp~Lp-~~iDAa~~~~~~~~iyfFkG~---- 88 (207)
T 1pex_A 28 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKS----F---WPELP-NRIDAAYEHPSHDLIFIFRGR---- 88 (207)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHH----H---CTTSC-SSCCEEEEETTTTEEEEEETT----
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhH----h---ccCCC-CCccEEEEeccCCcEEEEccC----
Confidence 34557899999977 36888876554443221110 0 11122 2223222222 6899999774
Q ss_pred CcceeEEEEECCCCce---EEeccCCCCCCCCcce-EEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCC
Q 008260 269 SEIIQVKVFDLQTCSW---STLKTYGKPPVSRGGQ-SVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVG 342 (572)
Q Consensus 269 ~~~~~v~~yd~~~~~W---~~~~~~g~~p~~R~~~-~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g 342 (572)
.+|+|+-.+..- ..+...| +|..-..- +|... ++++|+|-| +..|+||..+.+ +...-
T Consensus 89 ----~~w~~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~~~---~d~gy 152 (207)
T 1pex_A 89 ----KFWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG--------NQVWRYDDTNHI---MDKDY 152 (207)
T ss_dssp ----EEEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET--------TEEEEEETTTTE---ECSSC
T ss_pred ----EEEEEeCCeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeC--------CEEEEEeCcCcc---ccCCC
Confidence 577886432211 2233222 33211122 33333 479999976 358999977643 22110
Q ss_pred C-------CCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 343 V-------PPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 343 ~-------~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
+ +-.+..-.++... ++.+|.|-| +..|+||..+++-..
T Consensus 153 Pr~i~~~~~Gip~~iDaAf~~-~g~~YfFkg-------~~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 153 PRLIEEDFPGIGDKVDAVYEK-NGYIYFFNG-------PIQFEYSIWSNRIVR 197 (207)
T ss_dssp CCBHHHHSTTSCSCCSEEEEE-TTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CccHHHcCCCCCCCccEEEEc-CCcEEEEEC-------CEEEEEeCCccEEec
Confidence 0 0112222344444 667999988 679999998876544
No 152
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=90.33 E-value=13 Score=35.60 Aligned_cols=104 Identities=21% Similarity=0.212 Sum_probs=55.4
Q ss_pred CEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCc
Q 008260 256 NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (572)
Q Consensus 256 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 334 (572)
+.+++.|+.+. .+.+||..+.+....-. .....-.+++.. ++++++.|+.+ ..+.+||+.+.+
T Consensus 185 ~~~~~s~~~d~------~i~i~d~~~~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~s~D------g~i~iwd~~~~~ 248 (340)
T 4aow_A 185 NPIIVSCGWDK------LVKVWNLANCKLKTNHI----GHTGYLNTVTVSPDGSLCASGGKD------GQAMLWDLNEGK 248 (340)
T ss_dssp SCEEEEEETTS------CEEEEETTTTEEEEEEC----CCSSCEEEEEECTTSSEEEEEETT------CEEEEEETTTTE
T ss_pred CcEEEEEcCCC------EEEEEECCCCceeeEec----CCCCcEEEEEECCCCCEEEEEeCC------CeEEEEEeccCc
Confidence 35666666543 47889988776543321 111111223332 56777788764 347888987665
Q ss_pred EEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcE
Q 008260 335 WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (572)
Q Consensus 335 W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W 386 (572)
-...-.. ...-.+.+...++ .++.|+.+ ..+.+||.++..-
T Consensus 249 ~~~~~~~-----~~~v~~~~~~~~~-~~~~~~~d-----~~i~iwd~~~~~~ 289 (340)
T 4aow_A 249 HLYTLDG-----GDIINALCFSPNR-YWLCAATG-----PSIKIWDLEGKII 289 (340)
T ss_dssp EEEEEEC-----SSCEEEEEECSSS-SEEEEEET-----TEEEEEETTTTEE
T ss_pred eeeeecC-----CceEEeeecCCCC-ceeeccCC-----CEEEEEECCCCeE
Confidence 3322211 1122233333444 45555543 4588889887654
No 153
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=90.22 E-value=12 Score=35.70 Aligned_cols=64 Identities=13% Similarity=0.272 Sum_probs=36.0
Q ss_pred CEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEEC---CEEEEEecCCCCCCCCCceEEEECCC
Q 008260 256 NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVG---TSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 256 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~---~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
+.+++.|+.+. .|.++|+.+.+|..+..... ....-.+++... +.+++.|+.+ ..+.+||+.+
T Consensus 67 g~~l~s~s~D~------~v~iWd~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~ 132 (297)
T 2pm7_B 67 GTILASCSYDG------KVMIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKE 132 (297)
T ss_dssp CSEEEEEETTT------EEEEEEBSSSCBCCCEEECC--CSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCS
T ss_pred CCEEEEEcCCC------EEEEEEcCCCceEEEEEeec--CCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecC
Confidence 56777777654 58899998887765532110 111111222222 4567777754 3477777765
Q ss_pred C
Q 008260 333 M 333 (572)
Q Consensus 333 ~ 333 (572)
.
T Consensus 133 ~ 133 (297)
T 2pm7_B 133 N 133 (297)
T ss_dssp S
T ss_pred C
Confidence 4
No 154
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=90.15 E-value=0.49 Score=48.21 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=50.7
Q ss_pred ccCCCChhhHHHHhhheeeeeeCCCCCCC--CCCCChh------------hhHhHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 008260 36 LTSKFSNDSALLLYALYQQATVGPCNVPK--PSSWSPV------------EQSKWKSWQGLGNMATTEAMRLFVKILEEE 101 (572)
Q Consensus 36 ~~~~~~~~~~l~lY~l~kQat~G~~~~~~--p~~~~~~------------~~~k~~aW~~~~~~~~~~a~~~yi~~~~~~ 101 (572)
+.-..+.|+.++|=||.-||..||++... ++.++.. .+.=-+.|++++|||++||+.+|++++.++
T Consensus 197 G~~~c~~e~a~~LAAl~~qae~Gd~~~~~~~~~~~~l~~~lP~~~~~~~~e~~I~~~~~~~~g~s~~eA~~~yL~~~~~l 276 (371)
T 3ivf_A 197 GSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSL 276 (371)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHS
T ss_pred ceeecCHHHHHHHHHHHHHHHhCCCChhhcccchhcccccCCHHHhCchHHHHHHHHHHHccCCCHHHHHHHHHHHHhcc
Confidence 34567889999999999999999997543 3222210 222346899999999999999999999875
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=90.15 E-value=23 Score=38.38 Aligned_cols=155 Identities=9% Similarity=-0.029 Sum_probs=78.3
Q ss_pred cceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC-cEEEeeCCCCCCCc
Q 008260 270 EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM-TWDEIDAVGVPPSP 347 (572)
Q Consensus 270 ~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~v~~~g~~p~~ 347 (572)
....++++|+.+.+-..+... ......-..++.. +++.++++..+... ....++++|+.+. ....+..... ...
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~v~~~d~~~g~~~~~~~~~~~-~~~ 308 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPDENILYVAEVNRAQ-NECKVNAYDAETGRFVRTLFVETD-KHY 308 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCC--SCTTCEEEEEEECTTSSEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEEC-SSC
T ss_pred CeeEEEEEECCCCceEeeccC--CCCceeEeeEEEECCCCEEEEEEeCCCC-CeeEEEEEECCCCceeeEEEEccC-CCe
Confidence 346799999998876655421 1111111223332 44444444433222 2457999999988 6766542210 000
Q ss_pred c-cceEEEEEc--CCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCcccc-EEEEECCccccceeeeeeccC
Q 008260 348 R-SDHAAAVHA--ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGH-AGVTIGENWFLGLSLVVSSYS 423 (572)
Q Consensus 348 R-~~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~-~~~~~~~~~~iG~s~~~~~~~ 423 (572)
. .....+... ++.+++.+..++ ...+|.+|........+.. ..... ....+.. +
T Consensus 309 ~~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~------~~~~v~~~~~~sp-------------d 366 (706)
T 2z3z_A 309 VEPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTK------GEWEVTNFAGFDP-------------K 366 (706)
T ss_dssp CCCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCC------SSSCEEEEEEECT-------------T
T ss_pred ECccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCC------CCeEEEeeeEEcC-------------C
Confidence 0 012234444 666666554432 3578999977777776632 11111 1122221 0
Q ss_pred CCCEEEEEcCCCCCccCcEEEEeCCCCc
Q 008260 424 GEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 424 g~~~l~v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
...|++.+..++.....+|.+|..+..
T Consensus 367 -g~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 367 -GTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp -SSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred -CCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 235666555444334578888876653
No 156
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=90.09 E-value=12 Score=36.11 Aligned_cols=154 Identities=12% Similarity=0.166 Sum_probs=78.0
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--C---CEEEEEeccCCCCCc
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E---NKLLSIAGHTKDPSE 270 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~---~~iyv~GG~~~~~~~ 270 (572)
..+++.|+... .-..+.+||+.+.+........ ... ....+.+ + +.+++.|+.+.
T Consensus 31 ~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~-------------~~~-~v~~~~~~~~~~~~~~l~~~~~dg---- 90 (357)
T 3i2n_A 31 AKFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIE-------------KAK-PIKCGTFGATSLQQRYLATGDFGG---- 90 (357)
T ss_dssp SEEEEEEC--C--CCEEEEEEEECSSSEEEEEEEE-------------ESS-CEEEEECTTCCTTTCCEEEEETTS----
T ss_pred ceEEEecCccC--CCcEEEEEeCCCCcccceeeec-------------ccC-cEEEEEEcCCCCCCceEEEecCCC----
Confidence 46666775311 1236889999888766543321 111 1122222 2 47777777654
Q ss_pred ceeEEEEECCCCc--eEEeccCCCCCCCCcceEEEE-------ECCEEEEEecCCCCCCCCCceEEEECCCCc--EEEee
Q 008260 271 IIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTL-------VGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEID 339 (572)
Q Consensus 271 ~~~v~~yd~~~~~--W~~~~~~g~~p~~R~~~~~~~-------~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~v~ 339 (572)
.+.+||..+.+ -..+.. .. ..-.++.. -++.+++.|+.+ ..+.+||+.+.. ...+.
T Consensus 91 --~i~iwd~~~~~~~~~~~~~---~~--~~v~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~ 157 (357)
T 3i2n_A 91 --NLHIWNLEAPEMPVYSVKG---HK--EIINAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVANME 157 (357)
T ss_dssp --CEEEECTTSCSSCSEEECC---CS--SCEEEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEEEC
T ss_pred --eEEEEeCCCCCccEEEEEe---cc--cceEEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcceecc
Confidence 48888887654 222220 11 11111211 145566777753 348889988754 34443
Q ss_pred CCCCCCCcccceEEE----EEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 340 AVGVPPSPRSDHAAA----VHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 340 ~~g~~p~~R~~~~~~----~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
... ....+...+.+ ...++.+++.|+.+ ..+..||+.+.+-..
T Consensus 158 ~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~ 204 (357)
T 3i2n_A 158 PVQ-GENKRDCWTVAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMALRW 204 (357)
T ss_dssp CCT-TSCCCCEEEEEEECCCC-CCCEEEEEETT-----SEEEEEETTTTEEEE
T ss_pred ccC-CCCCCceEEEEEEeccCCCCCEEEEEccC-----CeEEEEECccCceee
Confidence 220 01112222222 12345577777654 468999998876533
No 157
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=89.95 E-value=14 Score=35.38 Aligned_cols=191 Identities=12% Similarity=0.072 Sum_probs=91.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~ 273 (572)
++++++.|+.+ ..+.++|+.+.+-... .. .....-.+++.. ++.+++.|+.+. .
T Consensus 66 ~~~~l~s~s~d-----~~i~vwd~~~~~~~~~--~~------------~h~~~v~~~~~~~~~~~l~sgs~D~------~ 120 (304)
T 2ynn_A 66 RKNWIIVGSDD-----FRIRVFNYNTGEKVVD--FE------------AHPDYIRSIAVHPTKPYVLSGSDDL------T 120 (304)
T ss_dssp GGTEEEEEETT-----SEEEEEETTTCCEEEE--EE------------CCSSCEEEEEECSSSSEEEEEETTS------C
T ss_pred CCCEEEEECCC-----CEEEEEECCCCcEEEE--Ee------------CCCCcEEEEEEcCCCCEEEEECCCC------e
Confidence 45566666632 3588889887653221 11 011111122222 566777777654 4
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
|.+||..+.. ...... ......-.+++.. ++.+++.|+.++ .+.+||+.+..-...... ...+...
T Consensus 121 v~lWd~~~~~-~~~~~~--~~h~~~v~~v~~~p~~~~~l~sgs~D~------~v~iwd~~~~~~~~~~~~---~~~~~v~ 188 (304)
T 2ynn_A 121 VKLWNWENNW-ALEQTF--EGHEHFVMCVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTLTT---GQERGVN 188 (304)
T ss_dssp EEEEEGGGTT-EEEEEE--CCCCSCEEEEEECTTCTTEEEEEETTS------EEEEEETTCSSCSEEEEC---CCTTCEE
T ss_pred EEEEECCCCc-chhhhh--cccCCcEEEEEECCCCCCEEEEEeCCC------eEEEEECCCCCccceecc---CCcCcEE
Confidence 7888876542 111110 0111112233332 346777887643 478888765431111101 1111111
Q ss_pred EEEEE--cCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEE
Q 008260 352 AAAVH--AERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIV 429 (572)
Q Consensus 352 ~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~ 429 (572)
..... .++.+++.|+.+ ..+.++|+.+.+-...-. + ....-..+.+.. ...++
T Consensus 189 ~~~~~~~~~~~~l~s~s~D-----~~i~iWd~~~~~~~~~~~-~----h~~~v~~~~~~p---------------~~~~l 243 (304)
T 2ynn_A 189 YVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVATLE-G----HMSNVSFAVFHP---------------TLPII 243 (304)
T ss_dssp EEEECCSTTCCEEEEEETT-----SEEEEEETTTTEEEEEEE-C----CSSCEEEEEECS---------------SSSEE
T ss_pred EEEEEEcCCCCEEEEEcCC-----CeEEEEeCCCCccceeeC-C----CCCCEEEEEECC---------------CCCEE
Confidence 22221 244477777754 468899988765432210 1 111112222222 22577
Q ss_pred EEcCCCCCccCcEEEEeCCCCc
Q 008260 430 AFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 430 v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
+.|+.++. |.+||..+..
T Consensus 244 ~s~s~Dg~----i~iWd~~~~~ 261 (304)
T 2ynn_A 244 ISGSEDGT----LKIWNSSTYK 261 (304)
T ss_dssp EEEETTSC----EEEEETTTCC
T ss_pred EEEcCCCe----EEEEECCCCc
Confidence 88887765 7888877653
No 158
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=89.90 E-value=15 Score=35.72 Aligned_cols=149 Identities=11% Similarity=0.021 Sum_probs=80.3
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCC--ceEEe
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTC--SWSTL 287 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~ 287 (572)
+.++++|+.+.+........ .-..-+.++.. ++.||+..... ..|.+||+... .-..+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~-------------~~~~p~gia~d~~g~l~v~d~~~------~~v~~~~~~g~~~~~~~~ 129 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKN-------------LFYLPHGLSIDTDGNYWVTDVAL------HQVFKLDPHSKEGPLLIL 129 (329)
T ss_dssp CCEEEECTTTCCEEEEECTT-------------TCSSEEEEEECTTSCEEEEETTT------TEEEEECTTCSSCCSEEE
T ss_pred CcEEEEECCCCeEEeccCCC-------------ccCCceEEEECCCCCEEEEECCC------CEEEEEeCCCCeEEEEEe
Confidence 46999999887764432211 11112233333 67788876542 36899998765 23333
Q ss_pred ccCC---CCCCCC-cceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCC----CCc-ccceEEEEE
Q 008260 288 KTYG---KPPVSR-GGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP----PSP-RSDHAAAVH 356 (572)
Q Consensus 288 ~~~g---~~p~~R-~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~----p~~-R~~~~~~~~ 356 (572)
...+ ...... .-..+++. ++.|||..++. .+.+.+||++...-..+...+.. +.. ..-++.++.
T Consensus 130 ~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d 204 (329)
T 3fvz_A 130 GRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALV 204 (329)
T ss_dssp SBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEE
T ss_pred cccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEE
Confidence 2111 001111 12234444 57899997631 34689999665544444322111 111 122445555
Q ss_pred cC-CEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 357 AE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 357 ~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
.+ +.|||....+ +.|.+||+.+.+...
T Consensus 205 ~~~g~l~v~d~~~-----~~I~~~~~~~G~~~~ 232 (329)
T 3fvz_A 205 PHLDQLCVADREN-----GRIQCFKTDTKEFVR 232 (329)
T ss_dssp TTTTEEEEEETTT-----TEEEEEETTTCCEEE
T ss_pred CCCCEEEEEECCC-----CEEEEEECCCCcEEE
Confidence 54 7899987543 579999998666544
No 159
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=89.88 E-value=12 Score=37.56 Aligned_cols=149 Identities=17% Similarity=0.122 Sum_probs=75.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~ 273 (572)
++++++.|+.+ ..+.++|+.+.+-...- . .....-.+++.. ++..++.|+.+. .
T Consensus 134 dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~--~------------~h~~~v~~~~~~p~~~~l~s~s~d~------~ 188 (393)
T 1erj_A 134 DGKFLATGAED-----RLIRIWDIENRKIVMIL--Q------------GHEQDIYSLDYFPSGDKLVSGSGDR------T 188 (393)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEE--C------------CCSSCEEEEEECTTSSEEEEEETTS------E
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcEEEEE--c------------cCCCCEEEEEEcCCCCEEEEecCCC------c
Confidence 46667777632 35888998877543321 1 011111222222 455666676643 5
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCC-C--CCcc
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGV-P--PSPR 348 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~-~--p~~R 348 (572)
+.+||+.+.+....-. . .....+++.. ++++++.|+.++ .+.+||+.+..-...-.... . ....
T Consensus 189 v~iwd~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~ 257 (393)
T 1erj_A 189 VRIWDLRTGQCSLTLS---I--EDGVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKD 257 (393)
T ss_dssp EEEEETTTTEEEEEEE---C--SSCEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSS
T ss_pred EEEEECCCCeeEEEEE---c--CCCcEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCC
Confidence 8889998876543321 1 1111223332 567778887643 48889988765432211100 0 0111
Q ss_pred cceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 349 SDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 349 ~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
.-.+++...++.+++.|+.+ ..+.++|+.+.
T Consensus 258 ~v~~v~~~~~g~~l~s~s~d-----~~v~~wd~~~~ 288 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSGSLD-----RSVKLWNLQNA 288 (393)
T ss_dssp CEEEEEECTTSSEEEEEETT-----SEEEEEEC---
T ss_pred CEEEEEECCCCCEEEEEeCC-----CEEEEEECCCC
Confidence 12233334455577788765 45788887653
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=89.77 E-value=16 Score=35.76 Aligned_cols=115 Identities=10% Similarity=0.039 Sum_probs=52.8
Q ss_pred EEEEEccCCCCc-ccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCC-EEEEEeccCCCCCcceeE
Q 008260 197 KMYIYGGNHNGR-YLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 197 ~lyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~-~iyv~GG~~~~~~~~~~v 274 (572)
..+++|.+..+. ..-.+|.+|..+.+++.+.... ...-.+.+..-++ .||+.+.... ....-.+
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~-------------~~~p~~l~~spdg~~l~~~~~~~~-~~~~v~~ 79 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE-------------VANPSYLIPSADGKFVYSVNEFSK-DQAAVSA 79 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE-------------CSCCCSEEECTTSSEEEEEECCSS-TTCEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc-------------CCCCceEEECCCCCEEEEEEccCC-CCCcEEE
Confidence 344567654321 1123566677888887765431 1111111122234 5666654321 1122344
Q ss_pred EEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 275 ~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
|.+|..+.+.+.+.... .....-...+..++.||+.... -+.+.+|++.+.
T Consensus 80 ~~~~~~~g~~~~~~~~~--~~~~~p~~~~~dg~~l~~~~~~------~~~v~~~~~~~~ 130 (361)
T 3scy_A 80 FAFDKEKGTLHLLNTQK--TMGADPCYLTTNGKNIVTANYS------GGSITVFPIGQD 130 (361)
T ss_dssp EEEETTTTEEEEEEEEE--CSSSCEEEEEECSSEEEEEETT------TTEEEEEEBCTT
T ss_pred EEEeCCCCcEEEeeEec--cCCCCcEEEEECCCEEEEEECC------CCEEEEEEeCCC
Confidence 55566657776664310 0111122233334456665432 245888887643
No 161
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=89.44 E-value=7.8 Score=37.54 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=59.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe---CCEEEEEeccCCCCCcc
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW---ENKLLSIAGHTKDPSEI 271 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~---~~~iyv~GG~~~~~~~~ 271 (572)
++++++.|+.+ ..+.++|+.+.....+.... .....-.+++.. ++.+++.|+.+.
T Consensus 24 ~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~------------gH~~~V~~v~~~~~~~~~~l~s~s~D~----- 81 (316)
T 3bg1_A 24 YGTRLATCSSD-----RSVKIFDVRNGGQILIADLR------------GHEGPVWQVAWAHPMYGNILASCSYDR----- 81 (316)
T ss_dssp GGCEEEEEETT-----TEEEEEEEETTEEEEEEEEE------------CCSSCEEEEEECCGGGSSCEEEEETTS-----
T ss_pred CCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEc------------CCCccEEEEEeCCCCCCCEEEEEECCC-----
Confidence 35666777632 35778888776544433332 011111122221 256777777654
Q ss_pred eeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-C--CEEEEEecCCCCCCCCCceEEEECCCC-cEEEe
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-G--TSLVIFGGEDAKRSLLNDLHILDLETM-TWDEI 338 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~--~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~v 338 (572)
.|.+||+.+.+|..+..... ....-.+++.. + +.+++.|+.++ .+.++|..+. .|...
T Consensus 82 -~v~iWd~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 82 -KVIIWREENGTWEKSHEHAG--HDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEGQWEVK 143 (316)
T ss_dssp -CEEEECCSSSCCCEEEEECC--CSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSSCEEEC
T ss_pred -EEEEEECCCCcceEEEEccC--CCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCCCccee
Confidence 48889998877765532100 11112233333 2 46777777643 3777777665 56543
No 162
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=89.36 E-value=15 Score=34.86 Aligned_cols=159 Identities=13% Similarity=0.023 Sum_probs=82.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEE----eccCC----
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSI----AGHTK---- 266 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~----GG~~~---- 266 (572)
+++||+.... ...+++||+.+.+...+..... ..+..+....++.-++++|+. |....
T Consensus 79 dg~l~v~~~~-----~~~i~~~d~~~g~~~~~~~~~~---------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~ 144 (296)
T 3e5z_A 79 QGHLIACSHG-----LRRLERQREPGGEWESIADSFE---------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY 144 (296)
T ss_dssp TCCEEEEETT-----TTEEEEECSTTCCEEEEECEET---------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSS
T ss_pred CCcEEEEecC-----CCeEEEEcCCCCcEEEEeeccC---------CCCCCCCCCEEECCCCCEEEECCccccccccccc
Confidence 5678776431 1469999998888776643210 001111122222336788886 43210
Q ss_pred ---CCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECC-CCcE---EEe
Q 008260 267 ---DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLE-TMTW---DEI 338 (572)
Q Consensus 267 ---~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W---~~v 338 (572)
.......++.||+. .+...+.. ... .-.+.+.. ++++++.... .+.+++||+. +.+. ..+
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~---~~~gi~~s~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~ 212 (296)
T 3e5z_A 145 GGEMELPGRWVFRLAPD-GTLSAPIR--DRV---KPNGLAFLPSGNLLVSDTG------DNATHRYCLNARGETEYQGVH 212 (296)
T ss_dssp CCCCCSSSCEEEEECTT-SCEEEEEC--CCS---SEEEEEECTTSCEEEEETT------TTEEEEEEECSSSCEEEEEEE
T ss_pred cccccCCCcEEEEECCC-CCEEEeec--CCC---CCccEEECCCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeE
Confidence 01123479999987 55555432 111 11233333 4555554432 3469999986 4455 222
Q ss_pred eCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 339 DAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 339 ~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
-.. ....| .++++..++.||+..+ +.|.+||+.......+.
T Consensus 213 ~~~-~~~~p---~~i~~d~~G~l~v~~~-------~~v~~~~~~g~~~~~~~ 253 (296)
T 3e5z_A 213 FTV-EPGKT---DGLRVDAGGLIWASAG-------DGVHVLTPDGDELGRVL 253 (296)
T ss_dssp ECC-SSSCC---CSEEEBTTSCEEEEET-------TEEEEECTTSCEEEEEE
T ss_pred eeC-CCCCC---CeEEECCCCCEEEEcC-------CeEEEECCCCCEEEEEE
Confidence 111 01111 2345555667888762 56999999866655554
No 163
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=89.34 E-value=8.9 Score=41.43 Aligned_cols=155 Identities=13% Similarity=-0.002 Sum_probs=82.9
Q ss_pred cCcEEEEEcCC------CcEEEee-ecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCC--CcceeEEEEECC
Q 008260 210 LSDMHILDLRS------WAWSKIQ-AKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDP--SEIIQVKVFDLQ 280 (572)
Q Consensus 210 ~~~v~~yd~~t------~~W~~~~-~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~--~~~~~v~~yd~~ 280 (572)
..+++++|+.+ ...+.+. .. ..........-+++.+++....... -...+++++|+.
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~--------------~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~ 225 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDA--------------HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT 225 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSC--------------SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred eeEEEEEECCCCccccCCceeEEEecC--------------CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC
Confidence 35899999988 6655543 11 1111111122255545544433221 123689999998
Q ss_pred -CC---ceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCC---CCccc-ce
Q 008260 281 -TC---SWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP---PSPRS-DH 351 (572)
Q Consensus 281 -~~---~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~---p~~R~-~~ 351 (572)
+. +...+... ........+.. +++||+.+..++ ...++.+|+.+.++..+...... |.-.. ..
T Consensus 226 ~~g~~~~~~~l~~~----~~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~ 297 (662)
T 3azo_A 226 EDGRFADTRTLLGG----PEEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMR 297 (662)
T ss_dssp TTSCEEEEEEEEEE----TTBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCC
T ss_pred CCCcccccEEeCCC----CCceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccCccccccCc
Confidence 56 44444321 01112223333 566777765542 23699999988899887543100 10000 12
Q ss_pred EEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 352 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
..+...++.+++.+.. -...+|.+|+.+.+.+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~----~~~~l~~~d~~~~~~~~l~ 332 (662)
T 3azo_A 298 WFAPLANGLIAVVHGK----GAAVLGILDPESGELVDAA 332 (662)
T ss_dssp SEEECTTSCEEEEEBS----SSCEEEEEETTTTEEEECC
T ss_pred eEeEeCCCEEEEEEEc----CccEEEEEECCCCcEEEec
Confidence 2334445557766643 2357899999888877764
No 164
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=89.31 E-value=6.1 Score=39.39 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=58.6
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCC--ceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEEC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTC--SWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDL 330 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~ 330 (572)
++.+++.|+.+. .+.+||..+. ....+... ......-.++... ++.+++.|+.+ ..+.+||+
T Consensus 78 ~~~~l~~~~~dg------~v~vw~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d------g~v~iwd~ 143 (416)
T 2pm9_A 78 NNKIIAGALDNG------SLELYSTNEANNAINSMARF--SNHSSSVKTVKFNAKQDNVLASGGNN------GEIFIWDM 143 (416)
T ss_dssp SSSCEEEEESSS------CEEEECCSSTTSCCCEEEEC--CCSSSCCCEEEECSSSTTBEEEECSS------SCEEBCBT
T ss_pred CCCeEEEEccCC------eEEEeecccccccccchhhc--cCCccceEEEEEcCCCCCEEEEEcCC------CeEEEEEC
Confidence 566777777653 4888888761 12122211 0111122233333 26777777754 34788888
Q ss_pred CCCc------EE-EeeCCCCCCCcccceEEEEEcC-CEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 331 ETMT------WD-EIDAVGVPPSPRSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 331 ~t~~------W~-~v~~~g~~p~~R~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
.+.. -. .+... ......-.+++...+ +.+++.|+.+ ..+.+||+.+.+...
T Consensus 144 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~ 202 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQS--MSSVDEVISLAWNQSLAHVFASAGSS-----NFASIWDLKAKKEVI 202 (416)
T ss_dssp TTTSSCTTTCCCBCCCCS--CCSSCCCCEEEECSSCTTEEEEESSS-----SCEEEEETTTTEEEE
T ss_pred CCCccccccccccccccc--cCCCCCeeEEEeCCCCCcEEEEEcCC-----CCEEEEECCCCCcce
Confidence 7654 11 11000 011112233444433 4588888764 468999998876544
No 165
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=89.25 E-value=9.7 Score=38.73 Aligned_cols=110 Identities=11% Similarity=0.069 Sum_probs=52.9
Q ss_pred CEEEEEeccCCCCCcceeEEEEECCCC--------ceEEeccCCCCCCCCcceEEEEE-CCE-EEEEecCCCCCCCCCce
Q 008260 256 NKLLSIAGHTKDPSEIIQVKVFDLQTC--------SWSTLKTYGKPPVSRGGQSVTLV-GTS-LVIFGGEDAKRSLLNDL 325 (572)
Q Consensus 256 ~~iyv~GG~~~~~~~~~~v~~yd~~~~--------~W~~~~~~g~~p~~R~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v 325 (572)
+.+++.|+.++ .|.+||..+. ....+... ........++... .+. +++.|+.+ ..+
T Consensus 141 ~~~lat~~~dg------~V~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i 206 (430)
T 2xyi_A 141 ACVIATKTPSS------DVLVFDYTKHPSKPEPSGECQPDLRL--RGHQKEGYGLSWNPNLNGYLLSASDD------HTI 206 (430)
T ss_dssp EEEEEEECSSS------CEEEEEGGGSCSSCCTTCCCCCSEEE--ECCSSCCCCEEECTTSTTEEEEECTT------SCE
T ss_pred CcEEEEECCCC------cEEEEECCCcccccCccccCCCcEEe--cCCCCCeEEEEeCCCCCCeEEEEeCC------CeE
Confidence 46777776653 4888887652 11111110 0011112233333 233 77777754 348
Q ss_pred EEEECCCC---cEEEeeCCCCCCCcccceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 326 HILDLETM---TWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 326 ~~yd~~t~---~W~~v~~~g~~p~~R~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
.+||+.+. .+..............-++++... ++.+++.|+.+ ..|.+||+.+.
T Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-----g~i~i~d~~~~ 264 (430)
T 2xyi_A 207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-----QKLMIWDTRNN 264 (430)
T ss_dssp EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCS
T ss_pred EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence 88888762 222110000001112223333333 44577777654 56899998865
No 166
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=89.13 E-value=8.9 Score=36.81 Aligned_cols=160 Identities=7% Similarity=-0.083 Sum_probs=80.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCC-----CC
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD-----PS 269 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~-----~~ 269 (572)
++++|+..+ +.+++||+.+.+++.+.... ...+..+.....+.-++++|+-.-.... ..
T Consensus 64 dG~l~v~~~-------~~l~~~d~~~g~~~~~~~~~---------~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 64 SGGYVATIG-------TKFCALNWKEQSAVVLATVD---------NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp TSSEEEEET-------TEEEEEETTTTEEEEEEECC---------TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCT
T ss_pred CCCEEEEEC-------CeEEEEECCCCcEEEEEecC---------CCCCCCCCCCEEECCCCCEEEecCCcccccccccC
Confidence 456666432 46999999999888776532 0011122222222236777764311110 12
Q ss_pred cceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEEC--CCCcEEEeeCCCCCC
Q 008260 270 EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDL--ETMTWDEIDAVGVPP 345 (572)
Q Consensus 270 ~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~--~t~~W~~v~~~g~~p 345 (572)
....++++|+.. +...+... .. ...+.+.. ++.||+.... .+.|++||. .+............+
T Consensus 128 ~~~~l~~~d~~g-~~~~~~~~--~~---~pngi~~spdg~~lyv~~~~------~~~i~~~~~d~~~G~~~~~~~~~~~~ 195 (297)
T 3g4e_A 128 HQGALYSLFPDH-HVKKYFDQ--VD---ISNGLDWSLDHKIFYYIDSL------SYSVDAFDYDLQTGQISNRRSVYKLE 195 (297)
T ss_dssp TCEEEEEECTTS-CEEEEEEE--ES---BEEEEEECTTSCEEEEEEGG------GTEEEEEEECTTTCCEEEEEEEEECC
T ss_pred CCcEEEEEECCC-CEEEEeec--cc---cccceEEcCCCCEEEEecCC------CCcEEEEeccCCCCcccCcEEEEECC
Confidence 345788888753 33333211 11 11234443 4468887643 356888876 444442211100001
Q ss_pred C-cccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 346 S-PRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 346 ~-~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
. ...-.++++-.++.||+..... ..|.+||+.+.+..
T Consensus 196 ~~~~~p~g~~~d~~G~lwva~~~~-----~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 196 KEEQIPDGMCIDAEGKLWVACYNG-----GRVIRLDPVTGKRL 233 (297)
T ss_dssp GGGCEEEEEEEBTTSCEEEEEETT-----TEEEEECTTTCCEE
T ss_pred CCCCCCCeeEECCCCCEEEEEcCC-----CEEEEEcCCCceEE
Confidence 1 1122345555556688875321 45999999876654
No 167
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=89.08 E-value=7 Score=39.60 Aligned_cols=147 Identities=13% Similarity=0.153 Sum_probs=76.3
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++.+++.|+.++ .|.+||..+.+....-. . ....-.+++.. ++.+++.|+.++. +.+||+.+.
T Consensus 119 ~~~~l~s~s~Dg------~i~vwd~~~~~~~~~l~---~-h~~~V~~v~~~~~~~~l~sgs~D~~------i~iwd~~~~ 182 (410)
T 1vyh_C 119 VFSVMVSASEDA------TIKVWDYETGDFERTLK---G-HTDSVQDISFDHSGKLLASCSADMT------IKLWDFQGF 182 (410)
T ss_dssp SSSEEEEEESSS------CEEEEETTTCCCCEEEC---C-CSSCEEEEEECTTSSEEEEEETTSC------CCEEETTSS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEe---c-cCCcEEEEEEcCCCCEEEEEeCCCe------EEEEeCCCC
Confidence 356677777654 48888987765433211 0 11111223332 5677788886543 667887665
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCcccc
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFL 413 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~i 413 (572)
.- +.... .....-.+++...++..++.|+.+ ..+..+|+.+......-. + ......++....
T Consensus 183 ~~--~~~~~--~h~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~~~~~~~~~~~-~----h~~~v~~~~~~~---- 244 (410)
T 1vyh_C 183 EC--IRTMH--GHDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGYCVKTFT-G----HREWVRMVRPNQ---- 244 (410)
T ss_dssp CE--EECCC--CCSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEEEE-C----CSSCEEEEEECT----
T ss_pred ce--eEEEc--CCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEe-C----CCccEEEEEECC----
Confidence 42 22220 111122233344444577778765 568899988775433210 1 111112222221
Q ss_pred ceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 414 GLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 414 G~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
.+.+++.|+.++. |.+||+.+.
T Consensus 245 -----------~g~~l~s~s~D~~----v~vwd~~~~ 266 (410)
T 1vyh_C 245 -----------DGTLIASCSNDQT----VRVWVVATK 266 (410)
T ss_dssp -----------TSSEEEEEETTSC----EEEEETTTC
T ss_pred -----------CCCEEEEEcCCCe----EEEEECCCC
Confidence 2367788887654 777777654
No 168
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=88.97 E-value=15 Score=34.50 Aligned_cols=144 Identities=13% Similarity=0.071 Sum_probs=67.0
Q ss_pred ECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCCCcce
Q 008260 194 VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 194 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~ 272 (572)
.++.+++.|+.+ ..+.+||+.+..-...... ....-.+++. -++.+++.|+.+.
T Consensus 27 ~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~dg------ 81 (313)
T 3odt_A 27 VDDSKVASVSRD-----GTVRLWSKDDQWLGTVVYT--------------GQGFLNSVCYDSEKELLLFGGKDT------ 81 (313)
T ss_dssp EETTEEEEEETT-----SEEEEEEESSSEEEEEEEE--------------CSSCEEEEEEETTTTEEEEEETTS------
T ss_pred cCCCEEEEEEcC-----CcEEEEECCCCEEEEEeec--------------CCccEEEEEECCCCCEEEEecCCC------
Confidence 445556666632 3588889877654433221 1111122222 2667777777654
Q ss_pred eEEEEECCCCc-eEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 273 QVKVFDLQTCS-WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 273 ~v~~yd~~~~~-W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
.+..|+..... ...+.. .........+...++.+++.|+.+ ..+.+||.......... .. ..-.
T Consensus 82 ~i~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~-----~~-~~v~ 146 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYT---LIGHQGNVCSLSFQDGVVISGSWD------KTAKVWKEGSLVYNLQA-----HN-ASVW 146 (313)
T ss_dssp CEEEEETTCCTTSCC-CE---ECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTEEEEEEEC-----CS-SCEE
T ss_pred eEEEEEeeecCCCCcccc---hhhcccCEEEEEecCCEEEEEeCC------CCEEEEcCCcEEEeccc-----CC-Ccee
Confidence 36677765432 111111 111111222233355566677653 34778883222222221 11 1122
Q ss_pred EEEEEc-CCEEEEEeCCCCCcCcCcEEEEECC
Q 008260 352 AAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQ 382 (572)
Q Consensus 352 ~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~ 382 (572)
+++... ++.+++.|+.+ ..+..||..
T Consensus 147 ~~~~~~~~~~~l~~~~~d-----~~i~i~d~~ 173 (313)
T 3odt_A 147 DAKVVSFSENKFLTASAD-----KTIKLWQND 173 (313)
T ss_dssp EEEEEETTTTEEEEEETT-----SCEEEEETT
T ss_pred EEEEccCCCCEEEEEECC-----CCEEEEecC
Confidence 233332 33466777654 457888843
No 169
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=88.94 E-value=27 Score=37.34 Aligned_cols=73 Identities=18% Similarity=0.312 Sum_probs=44.5
Q ss_pred CCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcC-CEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccC-CCCCCCc
Q 008260 322 LNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQ-GEIPTPR 399 (572)
Q Consensus 322 ~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~-g~~p~~R 399 (572)
.+.+++.|..+...-.+... +..+.-|...+..+ +++|+.-.. .+.|.++|..+.+-...-.. +..|.|.
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~-----sn~V~ViD~~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEI---SAERFLHDGGLDGSHRYFITAANA-----RNKLVVIDTKEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEE---ECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred CCeEEEEecCCCccceeeee---eccccccCceECCCCCEEEEEeCC-----CCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence 45688999887665444433 45566666666544 445554332 36799999999875443333 4566664
Q ss_pred ccc
Q 008260 400 AGH 402 (572)
Q Consensus 400 ~~~ 402 (572)
.+.
T Consensus 391 ~g~ 393 (567)
T 1qks_A 391 RGA 393 (567)
T ss_dssp TCE
T ss_pred cce
Confidence 443
No 170
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=88.84 E-value=5.4 Score=39.80 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=58.3
Q ss_pred CEEEEEeccCCCCCcceeEEEEECCCCc------eE-EeccCCCCCCCCcceEEEEE-C-CEEEEEecCCCCCCCCCceE
Q 008260 256 NKLLSIAGHTKDPSEIIQVKVFDLQTCS------WS-TLKTYGKPPVSRGGQSVTLV-G-TSLVIFGGEDAKRSLLNDLH 326 (572)
Q Consensus 256 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~------W~-~~~~~g~~p~~R~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~ 326 (572)
+.+++.|+.+. .|.+||+.+.+ -. .+.. .......-.+++.. + +.+++.|+.+ ..+.
T Consensus 126 ~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~ 191 (416)
T 2pm9_A 126 DNVLASGGNNG------EIFIWDMNKCTESPSNYTPLTPGQ--SMSSVDEVISLAWNQSLAHVFASAGSS------NFAS 191 (416)
T ss_dssp TTBEEEECSSS------CEEBCBTTTTSSCTTTCCCBCCCC--SCCSSCCCCEEEECSSCTTEEEEESSS------SCEE
T ss_pred CCEEEEEcCCC------eEEEEECCCCcccccccccccccc--ccCCCCCeeEEEeCCCCCcEEEEEcCC------CCEE
Confidence 67777777654 48888887764 11 1110 01111122233333 2 5678888764 3489
Q ss_pred EEECCCCcEEEeeCCCCCCC--cccceEEEEEcC-CEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 327 ILDLETMTWDEIDAVGVPPS--PRSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 327 ~yd~~t~~W~~v~~~g~~p~--~R~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
+||+.+.+-...-....... ...-.+++...+ ..+++.|+.++. ...+.+||+.+.
T Consensus 192 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~ 250 (416)
T 2pm9_A 192 IWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNA 250 (416)
T ss_dssp EEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTST
T ss_pred EEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCC
Confidence 99998876544332200000 122233333333 247777765421 126788888764
No 171
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=88.80 E-value=19 Score=38.18 Aligned_cols=148 Identities=10% Similarity=0.074 Sum_probs=74.7
Q ss_pred eeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
..++++|..+.+-..+.. .+..+.-+..+.. ++ .+|+.+.. .+.+.++|+.+.+-...-..+..|.+..
T Consensus 302 g~i~vvd~~~~~~l~~~~---i~~~~~~~~~~~spdg~~l~va~~~------~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTS---IGAAPFLHDGGWDSSHRYFMTAANN------SNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp TEEEEEECTTSSSCEEEE---EECCSSCCCEEECTTSCEEEEEEGG------GTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred CeEEEEEecCCCcceeEE---eccCcCccCceECCCCCEEEEEecC------CCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 478999987654222111 1123334444444 33 45554432 4568899999887554433333343322
Q ss_pred ceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCC-----cEEeeccCCCCCCCcc-ccEEEEECCccccceeeeeecc
Q 008260 350 DHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTM-----EWSRPTQQGEIPTPRA-GHAGVTIGENWFLGLSLVVSSY 422 (572)
Q Consensus 350 ~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~-----~W~~v~~~g~~p~~R~-~~~~~~~~~~~~iG~s~~~~~~ 422 (572)
+.. .... ++.+|+.+.... +.|-++|..+. .|+.+.. ++.... ........+
T Consensus 373 g~~-~~~p~~g~~~~s~~~~d----~~V~v~d~~~~~~~~~~~~~v~~---l~~~g~~~~~v~~~pd------------- 431 (543)
T 1nir_A 373 GAN-FVHPKYGPVWSTSHLGD----GSISLIGTDPKNHPQYAWKKVAE---LQGQGGGSLFIKTHPK------------- 431 (543)
T ss_dssp CEE-EEETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEE---EECSCSCCCCEECCTT-------------
T ss_pred Ccc-cCCCCCccEEEeccCCC----ceEEEEEeCCCCCchhcCeEEEE---EEcCCCCceEEEcCCC-------------
Confidence 222 2333 367888775321 46788887762 2655432 111111 122233333
Q ss_pred CCCCEEEEEcCCCCC--ccCcEEEEeCCCCc
Q 008260 423 SGEDVIVAFGGYNGR--YNNEVHVLKPSHKS 451 (572)
Q Consensus 423 ~g~~~l~v~GG~~~~--~~~dv~~yd~~~~~ 451 (572)
...||+-.-.+.. ..+.|.+||..+..
T Consensus 432 --g~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 432 --SSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp --CCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred --CCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 3356653211211 35789999998765
No 172
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=88.58 E-value=16 Score=35.35 Aligned_cols=142 Identities=12% Similarity=0.100 Sum_probs=72.8
Q ss_pred eEEEEECCCCce-EEeccCCCCCCCCcceEEEEE-C----CEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCC
Q 008260 273 QVKVFDLQTCSW-STLKTYGKPPVSRGGQSVTLV-G----TSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPS 346 (572)
Q Consensus 273 ~v~~yd~~~~~W-~~~~~~g~~p~~R~~~~~~~~-~----~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~ 346 (572)
.|.+||..+.+. ..+...........-.+++.. + +.+++.|+.+ ..+.+||+.+.+-...-.. .
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~----~ 114 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR------GIIRIINPITMQCIKHYVG----H 114 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT------CEEEEECTTTCCEEEEEES----C
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC------CEEEEEEchhceEeeeecC----C
Confidence 478888876543 233211011111222233332 3 5788888764 3588999887653322111 1
Q ss_pred cccceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCC
Q 008260 347 PRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGE 425 (572)
Q Consensus 347 ~R~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~ 425 (572)
...-.+++... ++.+++.|+.+ ..+.+||+.+.+-...-. .+.........+.+.. .
T Consensus 115 ~~~i~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~---------------~ 172 (366)
T 3k26_A 115 GNAINELKFHPRDPNLLLSVSKD-----HALRLWNIQTDTLVAIFG--GVEGHRDEVLSADYDL---------------L 172 (366)
T ss_dssp CSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTTTEEEEEEC--STTSCSSCEEEEEECT---------------T
T ss_pred CCcEEEEEECCCCCCEEEEEeCC-----CeEEEEEeecCeEEEEec--ccccccCceeEEEECC---------------C
Confidence 12222333333 45578888764 468999998876544321 0111122222333321 2
Q ss_pred CEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 426 DVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 426 ~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
+..++.|+.++. +.+||+.+.
T Consensus 173 ~~~l~~~~~dg~----i~i~d~~~~ 193 (366)
T 3k26_A 173 GEKIMSCGMDHS----LKLWRINSK 193 (366)
T ss_dssp SSEEEEEETTSC----EEEEESCSH
T ss_pred CCEEEEecCCCC----EEEEECCCC
Confidence 257777877654 889998765
No 173
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=88.27 E-value=20 Score=34.99 Aligned_cols=34 Identities=0% Similarity=-0.015 Sum_probs=20.6
Q ss_pred EEEEEcCC-EEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 352 AAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 352 ~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
.+++..++ .||+.+..+ +.+.+||+.+.++..+.
T Consensus 215 ~~~~spdg~~l~v~~~~~-----~~v~v~~~~~g~~~~~~ 249 (361)
T 3scy_A 215 HLIFNSDGKFAYLINEIG-----GTVIAFRYADGMLDEIQ 249 (361)
T ss_dssp EEEECTTSSEEEEEETTT-----CEEEEEEEETTEEEEEE
T ss_pred EEEEcCCCCEEEEEcCCC-----CeEEEEEecCCceEEeE
Confidence 34444444 577765322 46888888877776553
No 174
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=88.07 E-value=19 Score=34.48 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=54.4
Q ss_pred CCE-EEEEeccCCCCCcceeEEEEEC-CCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 255 ENK-LLSIAGHTKDPSEIIQVKVFDL-QTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 255 ~~~-iyv~GG~~~~~~~~~~v~~yd~-~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
++. +++.|+.++ .+.+||+ .+.+...+.. .+....-.++....+.+++.|+.+ ..+.+||+.+
T Consensus 67 ~~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~ 131 (342)
T 1yfq_A 67 NTDLQIYVGTVQG------EILKVDLIGSPSFQALTN---NEANLGICRICKYGDDKLIAASWD------GLIEVIDPRN 131 (342)
T ss_dssp SSSEEEEEEETTS------CEEEECSSSSSSEEECBS---CCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHH
T ss_pred CCCcEEEEEcCCC------eEEEEEeccCCceEeccc---cCCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccc
Confidence 566 777777654 5899999 8877655542 001122223333335566666653 3477787654
Q ss_pred Cc-------EEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCC
Q 008260 333 MT-------WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT 383 (572)
Q Consensus 333 ~~-------W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t 383 (572)
.. .+.+... .....-.++. +..+. ++.|+.+ ..+.+||+.+
T Consensus 132 ~~~~~~~~~~~~~~~~---~~~~~v~~~~-~~~~~-l~~~~~d-----~~i~i~d~~~ 179 (342)
T 1yfq_A 132 YGDGVIAVKNLNSNNT---KVKNKIFTMD-TNSSR-LIVGMNN-----SQVQWFRLPL 179 (342)
T ss_dssp HTTBCEEEEESCSSSS---SSCCCEEEEE-ECSSE-EEEEEST-----TEEEEEESSC
T ss_pred cccccccccCCeeeEE---eeCCceEEEE-ecCCc-EEEEeCC-----CeEEEEECCc
Confidence 00 1112221 2222222333 33444 5556543 4689999887
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=88.01 E-value=21 Score=35.00 Aligned_cols=167 Identities=13% Similarity=0.088 Sum_probs=81.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeE
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v 274 (572)
+++.+++.....+ ...+|++|+.+.+-..+.... ..........-+++.++++..+ ..+
T Consensus 46 Dg~~l~~~~~~~g--~~~l~~~d~~~g~~~~lt~~~-------------~~~~~~~~~spdg~~l~~~~~~------~~l 104 (388)
T 3pe7_A 46 DGSKLLFGGAFDG--PWNYYLLDLNTQVATQLTEGR-------------GDNTFGGFLSPDDDALFYVKDG------RNL 104 (388)
T ss_dssp TSCEEEEEECTTS--SCEEEEEETTTCEEEECCCSS-------------CBCSSSCEECTTSSEEEEEETT------TEE
T ss_pred CCCEEEEEEcCCC--CceEEEEeCCCCceEEeeeCC-------------CCCccceEEcCCCCEEEEEeCC------CeE
Confidence 4544444443222 236999999998877665321 1111111222245444443322 378
Q ss_pred EEEECCCCceEEeccCCCCCCCCcceEEEE-E-CCEEEE-Ee--cCCC-------------CCCCCCceEEEECCCCcEE
Q 008260 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-V-GTSLVI-FG--GEDA-------------KRSLLNDLHILDLETMTWD 336 (572)
Q Consensus 275 ~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~-~-~~~iyv-~G--G~~~-------------~~~~~~~v~~yd~~t~~W~ 336 (572)
+++|+.+.+-..+.. .+.......... . ++++++ +- +... .......++++|+.+.+-.
T Consensus 105 ~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 105 MRVDLATLEENVVYQ---VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp EEEETTTCCEEEEEE---CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred EEEECCCCcceeeee---chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 999999887665542 232222112221 1 233322 11 0000 0012357999999988766
Q ss_pred EeeCCCCCCCcccceEEEEEc-CCEEEEEeCCC-CCcCcCcEEEEECCCCcEEeec
Q 008260 337 EIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGS-HAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 337 ~v~~~g~~p~~R~~~~~~~~~-~~~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
.+... .... ....... ++..+++.... .......+|.+|+.+.....+.
T Consensus 182 ~l~~~----~~~~-~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (388)
T 3pe7_A 182 VILQE----NQWL-GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK 232 (388)
T ss_dssp EEEEE----SSCE-EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC
T ss_pred EeecC----Cccc-cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee
Confidence 66432 1122 2333444 44444443322 1222458999999877766653
No 176
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=87.90 E-value=20 Score=34.41 Aligned_cols=156 Identities=6% Similarity=-0.077 Sum_probs=78.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~ 273 (572)
++.||+.+-. .+.+++||+ +.+.+.+... ... -++++.. +++||+..... ..
T Consensus 56 g~~l~~~d~~-----~~~i~~~~~-~g~~~~~~~~--------------~~~-~~gl~~d~dG~l~v~~~~~------~~ 108 (305)
T 3dr2_A 56 QRTLVWSDLV-----GRRVLGWRE-DGTVDVLLDA--------------TAF-TNGNAVDAQQRLVHCEHGR------RA 108 (305)
T ss_dssp GTEEEEEETT-----TTEEEEEET-TSCEEEEEES--------------CSC-EEEEEECTTSCEEEEETTT------TE
T ss_pred CCEEEEEECC-----CCEEEEEeC-CCCEEEEeCC--------------CCc-cceeeECCCCCEEEEECCC------CE
Confidence 3567777642 235889998 4444443321 111 1222222 67787763221 26
Q ss_pred EEEEECCCCceEEeccCC-CCCCCCcceEEEEE-CCEEEEE----ecCCC------C-CCCCCceEEEECCCCcEEEeeC
Q 008260 274 VKVFDLQTCSWSTLKTYG-KPPVSRGGQSVTLV-GTSLVIF----GGEDA------K-RSLLNDLHILDLETMTWDEIDA 340 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g-~~p~~R~~~~~~~~-~~~iyv~----GG~~~------~-~~~~~~v~~yd~~t~~W~~v~~ 340 (572)
|.+||+. .+.+.+.... ..+..+ -...++. ++.||+. |-... . ..-...|++||+.+.+++.+.
T Consensus 109 v~~~~~~-g~~~~~~~~~~~~~~~~-~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~- 185 (305)
T 3dr2_A 109 ITRSDAD-GQAHLLVGRYAGKRLNS-PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA- 185 (305)
T ss_dssp EEEECTT-SCEEEEECEETTEECSC-CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred EEEECCC-CCEEEEEeccCCCccCC-CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence 8888886 6666654210 011111 1223333 6788885 43211 0 011356999999888877764
Q ss_pred CCCCCCcccceEEEEEcC-CEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 341 VGVPPSPRSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 341 ~g~~p~~R~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
. ... -.+.+...+ +.||+..........+.|++||+....
T Consensus 186 ~--~~~---p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 186 D--LDH---PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp E--ESS---EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred c--CCC---CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 2 111 123444444 457776542211112579999987654
No 177
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=87.72 E-value=24 Score=38.61 Aligned_cols=122 Identities=17% Similarity=0.137 Sum_probs=67.8
Q ss_pred EEeCCEEEEEeccCCCCCcceeEEEEECCCCc--eEEeccCCCC--CC---CCcceEEEEECCEEEEEecCCCCCCCCCc
Q 008260 252 IPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTYGKP--PV---SRGGQSVTLVGTSLVIFGGEDAKRSLLND 324 (572)
Q Consensus 252 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~g~~--p~---~R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 324 (572)
++.++.||+.... ..|+.+|..+.+ |+.-...... +. .....+.++.+++||+... -..
T Consensus 74 ~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg~ 139 (677)
T 1kb0_A 74 VVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGR 139 (677)
T ss_dssp EEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSE
T ss_pred EEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CCE
Confidence 4569999998652 368999988754 8765421100 00 0112345567888887532 245
Q ss_pred eEEEECCCCc--EEEeeCCCCCCC-cccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc--EEee
Q 008260 325 LHILDLETMT--WDEIDAVGVPPS-PRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WSRP 389 (572)
Q Consensus 325 v~~yd~~t~~--W~~v~~~g~~p~-~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~v 389 (572)
++.+|..+.+ |+.-... ..+. .....+.++. ++.+|+..+......-..|+.||.++.+ |+.-
T Consensus 140 l~alD~~tG~~~W~~~~~~-~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 140 LIALDAATGKEVWHQNTFE-GQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEEEETTTCCEEEEEETTT-TCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEEeeecCCc-CcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 9999987664 8765320 0011 1111222333 5656654332221223569999998764 8764
No 178
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=87.68 E-value=10 Score=36.61 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=37.8
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-C--CEEEEEeccCCCCCcce
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-E--NKLLSIAGHTKDPSEII 272 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~--~~iyv~GG~~~~~~~~~ 272 (572)
+.+++.|+.+ ..+.++|+.+..|..+..... ....-.+++.. + +.+++.|+.+.
T Consensus 71 ~~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~~~------------h~~~V~~v~~~p~~~g~~lasgs~D~------ 127 (316)
T 3bg1_A 71 GNILASCSYD-----RKVIIWREENGTWEKSHEHAG------------HDSSVNSVCWAPHDYGLILACGSSDG------ 127 (316)
T ss_dssp SSCEEEEETT-----SCEEEECCSSSCCCEEEEECC------------CSSCCCEEEECCTTTCSCEEEECSSS------
T ss_pred CCEEEEEECC-----CEEEEEECCCCcceEEEEccC------------CCCceEEEEECCCCCCcEEEEEcCCC------
Confidence 4566667632 358888988877765543320 11111122222 2 56777777654
Q ss_pred eEEEEECCCC-ceEEe
Q 008260 273 QVKVFDLQTC-SWSTL 287 (572)
Q Consensus 273 ~v~~yd~~~~-~W~~~ 287 (572)
.+.++|..+. .|...
T Consensus 128 ~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 128 AISLLTYTGEGQWEVK 143 (316)
T ss_dssp CEEEEEECSSSCEEEC
T ss_pred CEEEEecCCCCCccee
Confidence 4777787665 46543
No 179
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=87.62 E-value=22 Score=38.64 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=77.2
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~ 273 (572)
++++++.|+.+ ..+.++|+.+..-...-.. ....-.+++. .++..++.|+.+. .
T Consensus 441 ~g~~l~sgs~D-----g~v~vwd~~~~~~~~~~~~--------------h~~~v~~~~~s~~~~~l~s~s~D~------~ 495 (694)
T 3dm0_A 441 DGQFALSGSWD-----GELRLWDLAAGVSTRRFVG--------------HTKDVLSVAFSLDNRQIVSASRDR------T 495 (694)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEEC--------------CSSCEEEEEECTTSSCEEEEETTS------C
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcceeEEeC--------------CCCCEEEEEEeCCCCEEEEEeCCC------E
Confidence 45666677632 3588899887643322110 1111112222 2566677777654 4
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE-C---CEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-G---TSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~---~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
|.++|.....-..+... ....+....++.+ . ..+++.|+.+ ..+.++|+.+.+-...-.. ....
T Consensus 496 i~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~~----h~~~ 563 (694)
T 3dm0_A 496 IKLWNTLGECKYTISEG--GEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLSNCKLRSTLAG----HTGY 563 (694)
T ss_dssp EEEECTTSCEEEEECSS--TTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTCCEEEEECC----CSSC
T ss_pred EEEEECCCCcceeeccC--CCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECCCCcEEEEEcC----CCCC
Confidence 77888765433333211 1111112223333 2 2466667654 3488899887654332211 1122
Q ss_pred ceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcE
Q 008260 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (572)
Q Consensus 350 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W 386 (572)
-.+++...++.+++.|+.+ ..|.++|+.+.+-
T Consensus 564 v~~v~~spdg~~l~sg~~D-----g~i~iwd~~~~~~ 595 (694)
T 3dm0_A 564 VSTVAVSPDGSLCASGGKD-----GVVLLWDLAEGKK 595 (694)
T ss_dssp EEEEEECTTSSEEEEEETT-----SBCEEEETTTTEE
T ss_pred EEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCce
Confidence 2334444556688888765 4688899887753
No 180
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=87.60 E-value=23 Score=34.99 Aligned_cols=184 Identities=14% Similarity=0.098 Sum_probs=92.0
Q ss_pred cEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccC
Q 008260 212 DMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY 290 (572)
Q Consensus 212 ~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 290 (572)
.+.++|+.+.+-....... .. . .+++. -++++++.|+.+ .+.+++..+.........
T Consensus 158 ~i~iwd~~~~~~~~~~~~~-------------~~-V-~~v~fspdg~~l~s~s~~-------~~~~~~~~~~~~~~~~~~ 215 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFEIETR-------------GE-V-KDLHFSTDGKVVAYITGS-------SLEVISTVTGSCIARKTD 215 (365)
T ss_dssp EEEEEETTTTEEEEEEECS-------------SC-C-CEEEECTTSSEEEEECSS-------CEEEEETTTCCEEEEECC
T ss_pred EEEEeECCCCcEEEEeCCC-------------Cc-e-EEEEEccCCceEEeccce-------eEEEEEeccCcceeeeec
Confidence 5888999887654332211 11 1 12222 256666666522 466777776654433221
Q ss_pred CCCCCCCcce-EEEE-ECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCC
Q 008260 291 GKPPVSRGGQ-SVTL-VGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS 368 (572)
Q Consensus 291 g~~p~~R~~~-~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~ 368 (572)
....... +++. -++..++.++.+... ...++.+|....................-.+++...++.+++.|+.+
T Consensus 216 ---~~~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D 290 (365)
T 4h5i_A 216 ---FDKNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND 290 (365)
T ss_dssp ---CCTTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred ---CCCCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence 1111111 2222 367888887765443 22466677666655433211000111112234444667788888865
Q ss_pred CCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCC
Q 008260 369 HAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPS 448 (572)
Q Consensus 369 ~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~ 448 (572)
..|.+||..+.+-...-..+ + ...-.++.+.. ++++++-|+.|+. |-++|+.
T Consensus 291 -----~~V~iwd~~~~~~~~~~~~g---H-~~~V~~v~fSp---------------dg~~laS~S~D~t----vrvw~ip 342 (365)
T 4h5i_A 291 -----NSIALVKLKDLSMSKIFKQA---H-SFAITEVTISP---------------DSTYVASVSAANT----IHIIKLP 342 (365)
T ss_dssp -----SCEEEEETTTTEEEEEETTS---S-SSCEEEEEECT---------------TSCEEEEEETTSE----EEEEECC
T ss_pred -----CEEEEEECCCCcEEEEecCc---c-cCCEEEEEECC---------------CCCEEEEEeCCCe----EEEEEcC
Confidence 46899999886543211000 0 11112232221 2268888887754 7888865
Q ss_pred CC
Q 008260 449 HK 450 (572)
Q Consensus 449 ~~ 450 (572)
.+
T Consensus 343 ~~ 344 (365)
T 4h5i_A 343 LN 344 (365)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 181
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=87.50 E-value=29 Score=38.32 Aligned_cols=159 Identities=6% Similarity=-0.044 Sum_probs=80.2
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~ 273 (572)
++.|||-. . ..+++||+.+++++....... .. ......-++++.. ++.||+- -... -
T Consensus 383 ~g~lWigt--~-----~GL~~~~~~~~~~~~~~~~~~-------~~-~~~~~~v~~i~~d~~g~lWig-T~~~------G 440 (758)
T 3ott_A 383 EQQLWIAT--D-----GSINRYDYATRQFIHYNIVDN-------TG-TYNTNWTYYIFEDTAGQLWIS-TCLG------G 440 (758)
T ss_dssp TSCEEEEE--T-----TEEEEEETTTTEEEEEEEECC-------C---CBSSSEEEEEECTTSEEEEE-ESSS------C
T ss_pred CCCEEEEe--C-----CcHhhcCcCCCcEEEeecCCC-------cC-CCCCceEEEEEEcCCCCEEEE-ECCC------c
Confidence 35677632 1 259999999999887653210 00 0011112233332 5788873 2221 3
Q ss_pred EEEEECCC------CceE---EeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCC
Q 008260 274 VKVFDLQT------CSWS---TLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGV 343 (572)
Q Consensus 274 v~~yd~~~------~~W~---~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~ 343 (572)
+.+||+.+ ..+. .......++.. .-.+.... ++.|++.||.. +.+.+||+.+.+++.+...+
T Consensus 441 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~i~~i~~d~~g~lWi~~~t~------~Gl~~~d~~~~~~~~~~~~~- 512 (758)
T 3ott_A 441 IFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGM-FINQIIPDNEGNVWVLLYNN------KGIDKINPRTREVTKLFADE- 512 (758)
T ss_dssp EEEEEHHHHHHCCSSEEECSEEECGGGTCSCS-CEEEEEECTTSCEEEEETTC------SSEEEEETTTTEEEEECTTT-
T ss_pred eEEEccccccccCCcceecccccccccccccc-eeeeEEEcCCCCEEEEccCC------CCcEEEeCCCCceEEecCCC-
Confidence 67777653 1221 11111112211 11122222 56899877753 34999999999998874321
Q ss_pred CCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 344 PPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 344 ~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
.+......+.+.-.++.|++- .. ..+.+||+.+.+++...
T Consensus 513 ~~~~~~~~~i~~d~~g~lWig-t~------~Gl~~~~~~~~~~~~~~ 552 (758)
T 3ott_A 513 LTGEKSPNYLLCDEDGLLWVG-FH------GGVMRINPKDESQQSIS 552 (758)
T ss_dssp SCGGGCEEEEEECTTSCEEEE-ET------TEEEEECC--CCCCBCC
T ss_pred cCCCcccceEEECCCCCEEEE-ec------CceEEEecCCCceEEec
Confidence 111112223333344668763 32 35899999988876653
No 182
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=87.09 E-value=24 Score=34.63 Aligned_cols=149 Identities=10% Similarity=0.036 Sum_probs=78.2
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE---CCEEEEEecCCCCCCCCCceEEEECC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV---GTSLVIFGGEDAKRSLLNDLHILDLE 331 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~ 331 (572)
++..++.|+.+. .|.+||+.+.+-...-. + . . ..-.++... ++.+++.|+.++ .+.+||+.
T Consensus 165 ~~~~l~t~s~D~------~v~lwd~~~~~~~~~~~-~-h-~-~~v~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~ 228 (354)
T 2pbi_B 165 SDMQILTASGDG------TCALWDVESGQLLQSFH-G-H-G-ADVLCLDLAPSETGNTFVSGGCDK------KAMVWDMR 228 (354)
T ss_dssp SSSEEEEEETTS------EEEEEETTTCCEEEEEE-C-C-S-SCEEEEEECCCSSCCEEEEEETTS------CEEEEETT
T ss_pred CCCEEEEEeCCC------cEEEEeCCCCeEEEEEc-C-C-C-CCeEEEEEEeCCCCCEEEEEeCCC------eEEEEECC
Confidence 444555666543 58899988776433211 0 0 0 011122221 346778887643 48899998
Q ss_pred CCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCcc
Q 008260 332 TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENW 411 (572)
Q Consensus 332 t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~ 411 (572)
+.+....-.. ....-.+++...++.+++.|+.+ ..+.+||+.+..-..+-. ..........+.+..
T Consensus 229 ~~~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~~---~~~~~~~~~~~~~s~-- 294 (354)
T 2pbi_B 229 SGQCVQAFET----HESDVNSVRYYPSGDAFASGSDD-----ATCRLYDLRADREVAIYS---KESIIFGASSVDFSL-- 294 (354)
T ss_dssp TCCEEEEECC----CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEEC---CTTCCSCEEEEEECT--
T ss_pred CCcEEEEecC----CCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEc---CCCcccceeEEEEeC--
Confidence 8765433211 11122233444455578888765 458889988765333211 111122223333322
Q ss_pred ccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 412 FLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 412 ~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
.+.+++.|+.++ .|.+||..+.
T Consensus 295 -------------~g~~l~~g~~d~----~i~vwd~~~~ 316 (354)
T 2pbi_B 295 -------------SGRLLFAGYNDY----TINVWDVLKG 316 (354)
T ss_dssp -------------TSSEEEEEETTS----CEEEEETTTC
T ss_pred -------------CCCEEEEEECCC----cEEEEECCCC
Confidence 226777787664 4888997654
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=87.08 E-value=38 Score=36.92 Aligned_cols=153 Identities=14% Similarity=0.013 Sum_probs=81.7
Q ss_pred cCcEEEEEcCCCcEE--EeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCCCcceeEEEEECCC-----
Q 008260 210 LSDMHILDLRSWAWS--KIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQVKVFDLQT----- 281 (572)
Q Consensus 210 ~~~v~~yd~~t~~W~--~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~----- 281 (572)
...++++++.+.... .+.... ..+........ -+++..++...... ...+.++++|+.+
T Consensus 207 ~~~v~~~~l~t~~~~~~~v~~~~------------~~~~~~~~~~~SpDg~~l~~~~~~~~-~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 207 HQKLYYHVLGTDQSEDILCAEFP------------DEPKWMGGAELSDDGRYVLLSIREGC-DPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCEEEEEETTSCGGGCEEEECCT------------TCTTCEEEEEECTTSCEEEEEEECSS-SSCCEEEEEEGGGSSSSS
T ss_pred CCEEEEEECCCCcccceEEeccC------------CCCeEEEEEEEcCCCCEEEEEEEccC-CCccEEEEEECccccccc
Confidence 456999998876532 221110 11222222222 24544444433211 1246899999876
Q ss_pred -C--ceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCC---cEEEeeCCCCCCCcc-cceEEE
Q 008260 282 -C--SWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM---TWDEIDAVGVPPSPR-SDHAAA 354 (572)
Q Consensus 282 -~--~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~---~W~~v~~~g~~p~~R-~~~~~~ 354 (572)
. .+..+... ...........++.||+.+..+.. ...|+++|+.+. .|+.+... ... .-....
T Consensus 274 ~~~~~~~~l~~~----~~~~~~~~s~dg~~l~~~s~~~~~---~~~l~~~d~~~~~~~~~~~l~~~----~~~~~~~~~~ 342 (710)
T 2xdw_A 274 TGILKWVKLIDN----FEGEYDYVTNEGTVFTFKTNRHSP---NYRLINIDFTDPEESKWKVLVPE----HEKDVLEWVA 342 (710)
T ss_dssp CSSCCCEEEECS----SSSCEEEEEEETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEEECC----CSSCEEEEEE
T ss_pred CCccceEEeeCC----CCcEEEEEeccCCEEEEEECCCCC---CCEEEEEeCCCCCcccceeccCC----CCCCeEEEEE
Confidence 4 58777521 111122233347888888764322 357999998875 58887643 221 222334
Q ss_pred EEcCCEEEEEeCCCCCcCcCcEEEEECCCCc-EEee
Q 008260 355 VHAERYLLIFGGGSHAACFNDLHVLDLQTME-WSRP 389 (572)
Q Consensus 355 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~-W~~v 389 (572)
...++.+++....+. ...++++|+.+.+ ...+
T Consensus 343 ~~~~~~lv~~~~~~g---~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 343 CVRSNFLVLCYLHDV---KNTLQLHDLATGALLKIF 375 (710)
T ss_dssp EETTTEEEEEEEETT---EEEEEEEETTTCCEEEEE
T ss_pred EEcCCEEEEEEEECC---EEEEEEEECCCCCEEEec
Confidence 444666777664322 2468999985554 4555
No 184
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=86.95 E-value=22 Score=33.95 Aligned_cols=148 Identities=8% Similarity=0.018 Sum_probs=73.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeE
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v 274 (572)
++.+++.|+.+ ..+.++|..+..-...-... ..........-++.+++.|+.+. .+
T Consensus 24 ~~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~s~s~d~------~i 79 (304)
T 2ynn_A 24 TEPWVLTTLYS-----GRVELWNYETQVEVRSIQVT-------------ETPVRAGKFIARKNWIIVGSDDF------RI 79 (304)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEECC-------------SSCEEEEEEEGGGTEEEEEETTS------EE
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCceeEEeecc-------------CCcEEEEEEeCCCCEEEEECCCC------EE
Confidence 45566666632 35888898876543221110 11111111222566777777653 58
Q ss_pred EEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEE
Q 008260 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAA 353 (572)
Q Consensus 275 ~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~ 353 (572)
.+||..+.+-...-. .....-.+++.. ++.+++.|+.++ .+.++|+.+.. ...... ......-.++
T Consensus 80 ~vwd~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~~~-~~~~~~--~~h~~~v~~v 146 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFE----AHPDYIRSIAVHPTKPYVLSGSDDL------TVKLWNWENNW-ALEQTF--EGHEHFVMCV 146 (304)
T ss_dssp EEEETTTCCEEEEEE----CCSSCEEEEEECSSSSEEEEEETTS------CEEEEEGGGTT-EEEEEE--CCCCSCEEEE
T ss_pred EEEECCCCcEEEEEe----CCCCcEEEEEEcCCCCEEEEECCCC------eEEEEECCCCc-chhhhh--cccCCcEEEE
Confidence 889988765322210 011112223333 456677777643 47788876542 111111 0111112233
Q ss_pred EEEc-CCEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 354 AVHA-ERYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 354 ~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
+... ++.+++.|+.+ ..+.++|+.+.
T Consensus 147 ~~~p~~~~~l~sgs~D-----~~v~iwd~~~~ 173 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLD-----RTVKVWSLGQS 173 (304)
T ss_dssp EECTTCTTEEEEEETT-----SEEEEEETTCS
T ss_pred EECCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence 3332 44578888865 46888887653
No 185
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.94 E-value=24 Score=34.33 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=42.6
Q ss_pred CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 306 GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 306 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
.+.+++.|+.++ .+.+||+.+.+-..+... .......+++...++.+++.|+.+ ..+.+||+.+.+
T Consensus 138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~~---~~~~~i~~~~~~pdg~~lasg~~d-----g~i~iwd~~~~~ 203 (343)
T 3lrv_A 138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHSA---KSDVEYSSGVLHKDSLLLALYSPD-----GILDVYNLSSPD 203 (343)
T ss_dssp -CCEEEEEETTC------CEEEEESSSSCEEEEECC---CSSCCCCEEEECTTSCEEEEECTT-----SCEEEEESSCTT
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcEEEEEec---CCCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCC
Confidence 456777777543 488999988776444322 122223455555667788888765 468999998765
Q ss_pred E
Q 008260 386 W 386 (572)
Q Consensus 386 W 386 (572)
-
T Consensus 204 ~ 204 (343)
T 3lrv_A 204 Q 204 (343)
T ss_dssp S
T ss_pred C
Confidence 3
No 186
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=86.89 E-value=4.6 Score=47.51 Aligned_cols=189 Identities=11% Similarity=0.114 Sum_probs=95.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeE
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v 274 (572)
++..+++|+.+ ..+.+||..+.+....... ...........-+++.++.|+.++ .+
T Consensus 972 ~g~~l~~g~~~-----g~i~i~d~~~~~~~~~~~~-------------h~~~v~~l~~s~dg~~l~s~~~dg------~i 1027 (1249)
T 3sfz_A 972 HLEYVAFGDED-----GAIKIIELPNNRVFSSGVG-------------HKKAVRHIQFTADGKTLISSSEDS------VI 1027 (1249)
T ss_dssp TSSEEEEEETT-----SCCEEEETTTTSCEEECCC-------------CSSCCCCEEECSSSSCEEEECSSS------BE
T ss_pred CCCEEEEEcCC-----CCEEEEEcCCCceeeeccc-------------CCCceEEEEECCCCCEEEEEcCCC------EE
Confidence 35556666532 3578888877654322110 011111111222667777777653 58
Q ss_pred EEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEE
Q 008260 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAA 354 (572)
Q Consensus 275 ~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~ 354 (572)
.+||..+.+...+.. ....-.++....+..++.|+.+ ..+.+||+.+.+-...-.. .... -.+++
T Consensus 1028 ~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~---~~~~-v~~~~ 1092 (1249)
T 3sfz_A 1028 QVWNWQTGDYVFLQA-----HQETVKDFRLLQDSRLLSWSFD------GTVKVWNVITGRIERDFTC---HQGT-VLSCA 1092 (1249)
T ss_dssp EEEETTTTEEECCBC-----CSSCEEEEEECSSSEEEEEESS------SEEEEEETTTTCCCEEEEC---CSSC-CCCEE
T ss_pred EEEECCCCceEEEec-----CCCcEEEEEEcCCCcEEEEECC------CcEEEEECCCCceeEEEcc---cCCc-EEEEE
Confidence 899998887654431 1122223334444445666653 3588899877653222111 1111 22334
Q ss_pred EEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCC
Q 008260 355 VHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGY 434 (572)
Q Consensus 355 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~ 434 (572)
...++.+++.|+.+ ..+.+||..+.+- +. .+........++.+.. .+.+++.|+.
T Consensus 1093 ~s~d~~~l~s~s~d-----~~v~iwd~~~~~~--~~---~l~~h~~~v~~~~~s~---------------dg~~lat~~~ 1147 (1249)
T 3sfz_A 1093 ISSDATKFSSTSAD-----KTAKIWSFDLLSP--LH---ELKGHNGCVRCSAFSL---------------DGILLATGDD 1147 (1249)
T ss_dssp ECSSSSSCEEECCS-----SCCCEECSSSSSC--SB---CCCCCSSCEEEEEECS---------------SSSEEEEEET
T ss_pred ECCCCCEEEEEcCC-----CcEEEEECCCcce--ee---eeccCCCcEEEEEECC---------------CCCEEEEEeC
Confidence 44455577777764 3467777765432 11 1111111122222322 2268888887
Q ss_pred CCCccCcEEEEeCCCCc
Q 008260 435 NGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 435 ~~~~~~dv~~yd~~~~~ 451 (572)
++. |.+||..+..
T Consensus 1148 dg~----i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1148 NGE----IRIWNVSDGQ 1160 (1249)
T ss_dssp TSC----CCEEESSSSC
T ss_pred CCE----EEEEECCCCc
Confidence 765 7788877653
No 187
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=86.85 E-value=14 Score=39.81 Aligned_cols=150 Identities=11% Similarity=-0.027 Sum_probs=82.6
Q ss_pred CcEEEEEcC-CC---cEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceE
Q 008260 211 SDMHILDLR-SW---AWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWS 285 (572)
Q Consensus 211 ~~v~~yd~~-t~---~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 285 (572)
.+++++|+. +. ....+... ....-...... ++++|+.+..+. ...++.+|+.+.++.
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~--------------~~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~ 278 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGG--------------PEEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAAT 278 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEE--------------TTBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEE
T ss_pred cEEEEEEECCCCcccccEEeCCC--------------CCceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCcee
Confidence 579999998 56 34443321 01111222222 677777765432 247999999888888
Q ss_pred EeccCCC---CCCCCc-ceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCE
Q 008260 286 TLKTYGK---PPVSRG-GQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERY 360 (572)
Q Consensus 286 ~~~~~g~---~p~~R~-~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~ 360 (572)
.+..... .|.-.. ....+.. ++++++.+.. + ...+|.+|+.+...+.+... .. .........++.
T Consensus 279 ~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~----~~~l~~~d~~~~~~~~l~~~----~~-~~~~~~s~~~~~ 348 (662)
T 3azo_A 279 QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G----AAVLGILDPESGELVDAAGP----WT-EWAATLTVSGTR 348 (662)
T ss_dssp ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S----SCEEEEEETTTTEEEECCSS----CC-EEEEEEEEETTE
T ss_pred ecccccccccCccccccCceEeEeCCCEEEEEEEc-C----ccEEEEEECCCCcEEEecCC----CC-eEEEEEecCCCE
Confidence 8753210 011110 1223333 6677777654 2 35689999988887766422 11 112221334444
Q ss_pred EEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 361 LLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 361 lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
+++..+.. .....+|.+|+.+.+.+.+.
T Consensus 349 ~~~~~~~~--~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 349 AVGVAASP--RTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp EEEEEEET--TEEEEEEEEETTTCCEEEEE
T ss_pred EEEEEcCC--CCCCEEEEEECCCCceEEee
Confidence 55554322 12346999999988887774
No 188
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=86.36 E-value=23 Score=33.64 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=35.0
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--C--CEEEEEeccCCCCCcc
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E--NKLLSIAGHTKDPSEI 271 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~--~~iyv~GG~~~~~~~~ 271 (572)
+.+++.|+.+ ..+.++|+.+.+|..+.... ........+.+ + +.+++.|+.+.
T Consensus 67 g~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~~-------------~h~~~v~~v~~~p~~~g~~l~s~s~d~----- 123 (297)
T 2pm7_B 67 GTILASCSYD-----GKVMIWKEENGRWSQIAVHA-------------VHSASVNSVQWAPHEYGPMLLVASSDG----- 123 (297)
T ss_dssp CSEEEEEETT-----TEEEEEEBSSSCBCCCEEEC-------------CCSSCEEEEEECCGGGCSEEEEEETTS-----
T ss_pred CCEEEEEcCC-----CEEEEEEcCCCceEEEEEee-------------cCCCceeEEEeCcCCCCcEEEEEECCC-----
Confidence 4566677632 35788898887776544332 11111222222 1 55677777653
Q ss_pred eeEEEEECCCC
Q 008260 272 IQVKVFDLQTC 282 (572)
Q Consensus 272 ~~v~~yd~~~~ 282 (572)
.+.+||+.+.
T Consensus 124 -~v~~wd~~~~ 133 (297)
T 2pm7_B 124 -KVSVVEFKEN 133 (297)
T ss_dssp -EEEEEEBCSS
T ss_pred -cEEEEEecCC
Confidence 5777887654
No 189
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=86.35 E-value=23 Score=35.69 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=51.9
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcc-eEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccc
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGG-QSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~ 350 (572)
.|+++|..+.+...+-. ....... .+++.. ++.+++.|+.++ .+.++|+.+.+-...... ...+
T Consensus 126 tV~lWd~~tg~~~~~~~---~~~~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~~~~---h~~~-- 191 (420)
T 4gga_A 126 SVYLWSASSGDILQLLQ---MEQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNMTS---HSAR-- 191 (420)
T ss_dssp EEEEEETTTCCEEEEEE---CCSTTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECC---CSSC--
T ss_pred EEEEEECCCCCEEEEEE---ecCCCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEEEeC---CCCc--
Confidence 68899998887665532 1111111 223332 567777887643 488999887764333221 1222
Q ss_pred eEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 351 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
..+...++. +++.|+.+ ..+..+|.....
T Consensus 192 v~~~s~~~~-~l~sgs~d-----~~i~~~d~~~~~ 220 (420)
T 4gga_A 192 VGSLSWNSY-ILSSGSRS-----GHIHHHDVRVAE 220 (420)
T ss_dssp EEEEEEETT-EEEEEETT-----SEEEEEETTSSS
T ss_pred eEEEeeCCC-EEEEEeCC-----CceeEeeecccc
Confidence 233334444 77777754 457777766543
No 190
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=86.16 E-value=9.8 Score=37.62 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=59.1
Q ss_pred EEEeCCEEEEEeccCCCCCcceeEEEEECCCCc-------eEEeccCCCCCCCCcceEEEEE-C----C---EEEEEecC
Q 008260 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS-------WSTLKTYGKPPVSRGGQSVTLV-G----T---SLVIFGGE 315 (572)
Q Consensus 251 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-------W~~~~~~g~~p~~R~~~~~~~~-~----~---~iyv~GG~ 315 (572)
++.+...+++.|+.++ .|.+||..+.+ -..+.. . ...-.++... + + .+++.|+.
T Consensus 21 ~~~~~~~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~---h--~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 21 SVSACNSFTVSCSGDG------YLKVWDNKLLDNENPKDKSYSHFV---H--KSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp EEEECSSEEEEEETTS------EEEEEESBCCTTCCGGGGEEEEEC---C--TTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred EEEecCCeEEEEcCCC------EEEEEECCCcccccCCCcceEEec---C--CCcEEEEEEecccccCCccccEEEEEcC
Confidence 3444456777777653 58888888766 333321 1 1112233333 3 5 78888876
Q ss_pred CCCCCCCCceEEEECCCCc------EEEeeCCCCCCC---cccceEEEEE----cCCEE-EEEeCCCCCcCcCcEEEEEC
Q 008260 316 DAKRSLLNDLHILDLETMT------WDEIDAVGVPPS---PRSDHAAAVH----AERYL-LIFGGGSHAACFNDLHVLDL 381 (572)
Q Consensus 316 ~~~~~~~~~v~~yd~~t~~------W~~v~~~g~~p~---~R~~~~~~~~----~~~~l-yv~GG~~~~~~~~~v~~yd~ 381 (572)
+ ..+.+||+.+.. +..+... +. ...-.+++.. .++.. ++.|+.+ ..+.+||+
T Consensus 90 d------g~i~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~ 155 (397)
T 1sq9_A 90 S------GDLLFYRITREDETKKVIFEKLDLL---DSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----GTTYIWKF 155 (397)
T ss_dssp T------SCEEEEEEEECTTTCCEEEEEECCS---CTTGGGSCEEEEEEECCC----CEEEEEEETT-----SCEEEEEE
T ss_pred C------CCEEEEEccCCcccccccceeeccc---ccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----CcEEEEeC
Confidence 4 348888887766 6666533 11 1223344444 34446 7777754 45777776
Q ss_pred CC
Q 008260 382 QT 383 (572)
Q Consensus 382 ~t 383 (572)
.+
T Consensus 156 ~~ 157 (397)
T 1sq9_A 156 HP 157 (397)
T ss_dssp ES
T ss_pred Cc
Confidence 65
No 191
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=86.10 E-value=6 Score=39.70 Aligned_cols=112 Identities=11% Similarity=0.065 Sum_probs=62.4
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEE-----eccCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCCCCCceEE
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWST-----LKTYGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHI 327 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----~~~~g~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~ 327 (572)
++.+++.|+.+. .|.+||..+..... +... ......-.+++.. ++ .+++.|+.+ ..+.+
T Consensus 93 ~~~~l~s~s~dg------~v~vw~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~l~s~~~d------g~i~i 158 (402)
T 2aq5_A 93 NDNVIASGSEDC------TVMVWEIPDGGLVLPLREPVITL--EGHTKRVGIVAWHPTAQNVLLSAGCD------NVILV 158 (402)
T ss_dssp CTTEEEEEETTS------EEEEEECCTTCCSSCBCSCSEEE--ECCSSCEEEEEECSSBTTEEEEEETT------SCEEE
T ss_pred CCCEEEEEeCCC------eEEEEEccCCCCccccCCceEEe--cCCCCeEEEEEECcCCCCEEEEEcCC------CEEEE
Confidence 567888887653 58889988764321 1100 0011112223333 22 577777754 34889
Q ss_pred EECCCCcEEEeeC-CCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 328 LDLETMTWDEIDA-VGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 328 yd~~t~~W~~v~~-~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
||+.+.+....-. . .....-.+++...++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 159 wd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 159 WDVGTGAAVLTLGPD---VHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVVA 212 (402)
T ss_dssp EETTTTEEEEEECTT---TCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEE
T ss_pred EECCCCCccEEEecC---CCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCceee
Confidence 9998876544321 1 122222344444455577777754 569999998876543
No 192
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=85.97 E-value=11 Score=38.30 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=52.6
Q ss_pred EEEEeccCCCCCcceeEEEEECCCC---ceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 258 LLSIAGHTKDPSEIIQVKVFDLQTC---SWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 258 iyv~GG~~~~~~~~~~v~~yd~~~~---~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
+++.|+.++ .|.+||+.+. .+..............-++++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 196 ~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d------g~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDDH------TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD------QKLMIWDTRN 263 (430)
T ss_dssp EEEEECTTS------CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTC
T ss_pred eEEEEeCCC------eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC------CeEEEEECCC
Confidence 777777654 4888888762 22211000000111122233333 45677777653 4588999886
Q ss_pred Cc----EEEeeCCCCCCCcccceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCC
Q 008260 333 MT----WDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQT 383 (572)
Q Consensus 333 ~~----W~~v~~~g~~p~~R~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t 383 (572)
.. -..+... ...-.+++... +..+++.|+.+ ..|.+||+.+
T Consensus 264 ~~~~~~~~~~~~~-----~~~v~~i~~~p~~~~~l~tg~~d-----g~v~vwd~~~ 309 (430)
T 2xyi_A 264 NNTSKPSHTVDAH-----TAEVNCLSFNPYSEFILATGSAD-----KTVALWDLRN 309 (430)
T ss_dssp SCSSSCSEEEECC-----SSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTC
T ss_pred CCCCcceeEeecC-----CCCeEEEEeCCCCCCEEEEEeCC-----CeEEEEeCCC
Confidence 52 1122111 11112223332 33488888865 4688999876
No 193
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=85.89 E-value=18 Score=37.59 Aligned_cols=179 Identities=12% Similarity=-0.017 Sum_probs=81.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCC----cEEEeee-cccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCC
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSW----AWSKIQA-KAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDP 268 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~----~W~~~~~-~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~ 268 (572)
.++||+-|.. .+.++++|..++ +-.+.-. ..... .....+ -|.+.. -++ |||-.-.+..+
T Consensus 95 r~~l~v~~l~-----s~~I~viD~~t~p~~p~~~k~ie~~~~~~-------~~g~s~-Ph~~~~~pdG-i~Vs~~g~~~g 160 (462)
T 2ece_A 95 RRFLIVPGLR-----SSRIYIIDTKPNPREPKIIKVIEPEEVKK-------VSGYSR-LHTVHCGPDA-IYISALGNEEG 160 (462)
T ss_dssp SCEEEEEBTT-----TCCEEEEECCSCTTSCEEEEEECHHHHHH-------HHCEEE-EEEEEECSSC-EEEEEEEETTS
T ss_pred CCEEEEccCC-----CCeEEEEECCCCCCCceeeeeechhhccc-------ccCCCc-ccceeECCCe-EEEEcCCCcCC
Confidence 4567776663 367999998766 3333221 00000 000112 233333 355 77753332233
Q ss_pred CcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEe---------cCCCCC---CCCCceEEEECCCCc
Q 008260 269 SEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFG---------GEDAKR---SLLNDLHILDLETMT 334 (572)
Q Consensus 269 ~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~G---------G~~~~~---~~~~~v~~yd~~t~~ 334 (572)
.....+.++|..+.+-..--..+..|.. ..+-.... .+.+|+-- |+.... .+.+.|.+||+.+.+
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~-~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGDQY-LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTTCC-CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCCcc-ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 4557899999997663332211112211 12222222 34444442 332221 346889999998764
Q ss_pred EEEeeCCCCC-CCcccceEEEEE--cCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 335 WDEIDAVGVP-PSPRSDHAAAVH--AERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 335 W~~v~~~g~~-p~~R~~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
-...-..+.. ..|| |-..++ .+.++||..-.+-....+.|++|.....+|+.+.
T Consensus 240 ~~~tI~vg~~g~~P~--~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 240 RIHSLTLGEENRMAL--ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp EEEEEESCTTEEEEE--EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred EeeEEecCCCCCccc--eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence 2221111100 0111 111112 2456776554111112245665554457787654
No 194
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=85.82 E-value=25 Score=33.57 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=71.2
Q ss_pred CCE-EEEEccCCCCcccCcEEEEEc-CCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcce
Q 008260 195 QDK-MYIYGGNHNGRYLSDMHILDL-RSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~-lyv~GG~~~~~~~~~v~~yd~-~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~ 272 (572)
++. +++.|+.+ ..+.+||+ .+.....+.... ....-.+++...+.+++.|+.+.
T Consensus 67 ~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~-------------~~~~v~~l~~~~~~~l~s~~~d~------ 122 (342)
T 1yfq_A 67 NTDLQIYVGTVQ-----GEILKVDLIGSPSFQALTNNE-------------ANLGICRICKYGDDKLIAASWDG------ 122 (342)
T ss_dssp SSSEEEEEEETT-----SCEEEECSSSSSSEEECBSCC-------------CCSCEEEEEEETTTEEEEEETTS------
T ss_pred CCCcEEEEEcCC-----CeEEEEEeccCCceEeccccC-------------CCCceEEEEeCCCCEEEEEcCCC------
Confidence 566 66677632 36899999 887664443200 11111122222255666666543
Q ss_pred eEEEEECCCCc-------eEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCC-Cc--EEEeeCCC
Q 008260 273 QVKVFDLQTCS-------WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLET-MT--WDEIDAVG 342 (572)
Q Consensus 273 ~v~~yd~~~~~-------W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t-~~--W~~v~~~g 342 (572)
.+.+||+.+.. .+.+. .......-.++....+. ++.|+.+ ..+.+||+.+ .. ......
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-- 190 (342)
T 1yfq_A 123 LIEVIDPRNYGDGVIAVKNLNSN---NTKVKNKIFTMDTNSSR-LIVGMNN------SQVQWFRLPLCEDDNGTIEES-- 190 (342)
T ss_dssp EEEEECHHHHTTBCEEEEESCSS---SSSSCCCEEEEEECSSE-EEEEEST------TEEEEEESSCCTTCCCEEEEC--
T ss_pred eEEEEcccccccccccccCCeee---EEeeCCceEEEEecCCc-EEEEeCC------CeEEEEECCccccccceeeec--
Confidence 57788866400 11222 11222222344444556 5566542 4588999887 33 333321
Q ss_pred CCCCcccceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECC
Q 008260 343 VPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQ 382 (572)
Q Consensus 343 ~~p~~R~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~ 382 (572)
+....-.+.+... ++.+++.|+.+ ..+.++|..
T Consensus 191 --~~~~~i~~i~~~~~~~~~l~~~~~d-----g~i~i~~~~ 224 (342)
T 1yfq_A 191 --GLKYQIRDVALLPKEQEGYACSSID-----GRVAVEFFD 224 (342)
T ss_dssp --SCSSCEEEEEECSGGGCEEEEEETT-----SEEEEEECC
T ss_pred --CCCCceeEEEECCCCCCEEEEEecC-----CcEEEEEEc
Confidence 1222223344444 45577777754 345555543
No 195
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=85.61 E-value=0.87 Score=49.21 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=52.7
Q ss_pred ccCCCChhhHHHHhhheeeeeeCCCCCCC--CCCCC---hh-----h-----hHhH-----HHhhcCCCCCHHHHHHHHH
Q 008260 36 LTSKFSNDSALLLYALYQQATVGPCNVPK--PSSWS---PV-----E-----QSKW-----KSWQGLGNMATTEAMRLFV 95 (572)
Q Consensus 36 ~~~~~~~~~~l~lY~l~kQat~G~~~~~~--p~~~~---~~-----~-----~~k~-----~aW~~~~~~~~~~a~~~yi 95 (572)
+.-..+.++.+.|=||--||.+||++... |+.++ ++ . ...| ..|+++.|||+.+|+..|+
T Consensus 113 G~l~c~~e~a~~LAAL~lQae~GDy~~~~~~~~yl~~~~~lP~~vl~~~~~s~e~~~~~I~~~hk~l~G~s~~eA~~~yL 192 (575)
T 2i1j_A 113 DEIYCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYL 192 (575)
T ss_dssp TSSCCCHHHHHHHHHHHHHHHHCSCCTTTCCTTTTTTCCCSCHHHHHTBCCCHHHHHHHHHHHHGGGTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCChhhcccccccccccCCHHHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 34567899999999999999999997553 44431 11 1 1234 5799999999999999999
Q ss_pred HHHHHhCCCcc
Q 008260 96 KILEEEDPGWY 106 (572)
Q Consensus 96 ~~~~~~~p~~~ 106 (572)
+++.++ |.|.
T Consensus 193 ~~a~~l-p~YG 202 (575)
T 2i1j_A 193 KIAQDL-EMYG 202 (575)
T ss_dssp HHHTTS-TTTT
T ss_pred HHHHhc-cccC
Confidence 999864 5554
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=85.59 E-value=28 Score=38.37 Aligned_cols=169 Identities=12% Similarity=0.073 Sum_probs=85.2
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCC------
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKD------ 267 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~------ 267 (572)
+++.++++....+.....++++|+.+++........ ... ...+.. + +-++++..+..
T Consensus 173 DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~--------------~~~-~~~~wspD-~~l~~~~~~~~~~~~~~ 236 (741)
T 1yr2_A 173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKW--------------VKF-SGLAWLGN-DALLYSRFAEPKEGQAF 236 (741)
T ss_dssp TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEE--------------EES-CCCEESTT-SEEEEEECCCC------
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCC--------------cee-ccEEEECC-CEEEEEEecCccccccc
Confidence 455555544333332347999999999886542111 000 112222 3 33333333221
Q ss_pred --CCcceeEEEEECCCCce--EEeccCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCCCCCceEEEECCCC--c-EEEe
Q 008260 268 --PSEIIQVKVFDLQTCSW--STLKTYGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETM--T-WDEI 338 (572)
Q Consensus 268 --~~~~~~v~~yd~~~~~W--~~~~~~g~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~--~-W~~v 338 (572)
......|+.+++.+.+- ..+.. ....+......... ++ .|++.... ... ..++++++|+.+. . |..+
T Consensus 237 ~~~~~~~~v~~~~lgt~~~~~~lv~~--~~~~~~~~~~~~~SpDG~~l~~~~~~-~~~-~~~~l~~~d~~~~~~~~~~~l 312 (741)
T 1yr2_A 237 QALNYNQTVWLHRLGTPQSADQPVFA--TPELPKRGHGASVSSDGRWVVITSSE-GTD-PVNTVHVARVTNGKIGPVTAL 312 (741)
T ss_dssp --CCCCCEEEEEETTSCGGGCEEEEC--CTTCTTCEEEEEECTTSCEEEEEEEC-TTC-SCCEEEEEEEETTEECCCEEE
T ss_pred ccCCCCCEEEEEECCCCchhCEEEec--cCCCCeEEEEEEECCCCCEEEEEEEc-cCC-CcceEEEEECCCCCCcccEEe
Confidence 11245688888876552 12221 11112222233333 44 45544432 211 2568999999877 6 8888
Q ss_pred eCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCC--CcEEeec
Q 008260 339 DAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT--MEWSRPT 390 (572)
Q Consensus 339 ~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~v~ 390 (572)
... .... ...+...++.||+....+ .....|+++|+.+ ..|+.+-
T Consensus 313 ~~~---~~~~--~~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~ 359 (741)
T 1yr2_A 313 IPD---LKAQ--WDFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVV 359 (741)
T ss_dssp ECS---SSSC--EEEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEE
T ss_pred cCC---CCce--EEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEe
Confidence 643 1111 222234566677765432 2235699999987 5798874
No 197
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=85.59 E-value=32 Score=37.50 Aligned_cols=166 Identities=12% Similarity=-0.018 Sum_probs=86.3
Q ss_pred CCEEEEEccCCCC--------cccCcEEEEEcCCCcE--EEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEec
Q 008260 195 QDKMYIYGGNHNG--------RYLSDMHILDLRSWAW--SKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAG 263 (572)
Q Consensus 195 ~~~lyv~GG~~~~--------~~~~~v~~yd~~t~~W--~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG 263 (572)
+++.++++..... .....++++++.+..- ..+.... ..+....+... -+++..++..
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~------------~~~~~~~~~~~SpDG~~l~~~~ 245 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT------------GDPTTFLQSDLSRDGKYLFVYI 245 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC------------CCTTCEEEEEECTTSCCEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC------------CCCEEEEEEEECCCCCEEEEEE
Confidence 5565556554322 2345699999987653 2222211 11122222222 2555445544
Q ss_pred cCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCc---EEEeeC
Q 008260 264 HTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT---WDEIDA 340 (572)
Q Consensus 264 ~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~---W~~v~~ 340 (572)
.... ....++.+|..+..|..+... ... ....+..++.+|+....+. ....|+++|+.+.. |+.+..
T Consensus 246 ~~~~--~~~~l~~~~~~~~~~~~l~~~----~~~-~~~~~~~~g~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~ 315 (695)
T 2bkl_A 246 LRGW--SENDVYWKRPGEKDFRLLVKG----VGA-KYEVHAWKDRFYVLTDEGA---PRQRVFEVDPAKPARASWKEIVP 315 (695)
T ss_dssp EETT--TEEEEEEECTTCSSCEEEEEC----SSC-CEEEEEETTEEEEEECTTC---TTCEEEEEBTTBCSGGGCEEEEC
T ss_pred eCCC--CceEEEEEcCCCCceEEeecC----CCc-eEEEEecCCcEEEEECCCC---CCCEEEEEeCCCCCccCCeEEec
Confidence 3321 356888888877788888632 111 1222224555666544321 13579999987754 888764
Q ss_pred CCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 341 VGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 341 ~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
.. + ...-...+.. ++.|++....+. ...++.+|+....-..+
T Consensus 316 ~~--~-~~~l~~~~~~-~~~lv~~~~~dg---~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 316 ED--S-SASLLSVSIV-GGHLSLEYLKDA---TSEVRVATLKGKPVRTV 357 (695)
T ss_dssp CC--S-SCEEEEEEEE-TTEEEEEEEETT---EEEEEEEETTCCEEEEC
T ss_pred CC--C-CCeEEEEEEE-CCEEEEEEEECC---EEEEEEEeCCCCeeEEe
Confidence 31 1 1122223333 566777664322 24688888765544444
No 198
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=85.32 E-value=18 Score=35.13 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=75.5
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcce---EEEEECCEEEEEecCCCCCCCCCceEEEECC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQ---SVTLVGTSLVIFGGEDAKRSLLNDLHILDLE 331 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~---~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 331 (572)
++.+++.||.++ .|.+||..+.+-...-..+.. .....| ..+..++.|.+.-. .+.+.+||..
T Consensus 47 d~~~l~sg~~Dg------~v~iwd~~~~~~~~~~~~~~v-~~~~~~~~~~s~s~D~~i~~w~~-------~~~~~~~~~~ 112 (343)
T 3lrv_A 47 DKWVCMCRCEDG------ALHFTQLKDSKTITTITTPNP-RTGGEHPAIISRGPCNRLLLLYP-------GNQITILDSK 112 (343)
T ss_dssp EEEEEEEEEETT------EEEEEEESSSSCEEEEEEECC-CTTCCCCSEEEECSTTEEEEEET-------TTEEEEEETT
T ss_pred CCCEEEEECCCC------cEEEEECCCCcEEEEEecCCc-eeeeeCCceEEecCCCeEEEEEc-------cCceEEeecC
Confidence 567788888765 478888776543221100000 111111 11111333433321 2356677777
Q ss_pred CCc-EEEeeCCCCCCCcccceEEEEEc--CCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEEC
Q 008260 332 TMT-WDEIDAVGVPPSPRSDHAAAVHA--ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIG 408 (572)
Q Consensus 332 t~~-W~~v~~~g~~p~~R~~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~ 408 (572)
+.+ -...... ....-.+++... ++.+++.|+.+ ..+..||+.+.+-..+.. ......-.+++...
T Consensus 113 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~---~~~~~~i~~~~~~p 180 (343)
T 3lrv_A 113 TNKVLREIEVD----SANEIIYMYGHNEVNTEYFIWADNR-----GTIGFQSYEDDSQYIVHS---AKSDVEYSSGVLHK 180 (343)
T ss_dssp TCCEEEEEECC----CSSCEEEEECCC---CCEEEEEETT-----CCEEEEESSSSCEEEEEC---CCSSCCCCEEEECT
T ss_pred CcceeEEeecC----CCCCEEEEEcCCCCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEe---cCCCCceEEEEECC
Confidence 766 3333211 111122333333 45577778755 468899998877644321 11111122333333
Q ss_pred CccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCcc
Q 008260 409 ENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKST 452 (572)
Q Consensus 409 ~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~~ 452 (572)
.+.+++.|+.++. |.+||+.+...
T Consensus 181 ----------------dg~~lasg~~dg~----i~iwd~~~~~~ 204 (343)
T 3lrv_A 181 ----------------DSLLLALYSPDGI----LDVYNLSSPDQ 204 (343)
T ss_dssp ----------------TSCEEEEECTTSC----EEEEESSCTTS
T ss_pred ----------------CCCEEEEEcCCCE----EEEEECCCCCC
Confidence 2378888887754 88999877643
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=85.28 E-value=26 Score=33.30 Aligned_cols=186 Identities=8% Similarity=0.018 Sum_probs=92.3
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCc--EEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~ 272 (572)
.+++++.|.. -+.++.+|.++.+ |+.-... .....+..+.-+++|++.+ ..
T Consensus 4 ~~~~lv~~~~-----~~~v~~~d~~tG~~~w~~~~~~--------------~~~~~~~~~~pdG~ilvs~--------~~ 56 (276)
T 3no2_A 4 PQHLLVGGSG-----WNKIAIINKDTKEIVWEYPLEK--------------GWECNSVAATKAGEILFSY--------SK 56 (276)
T ss_dssp CCEEEEECTT-----CSEEEEEETTTTEEEEEEECCT--------------TCCCCEEEECTTSCEEEEC--------BS
T ss_pred CCcEEEeeCC-----CCEEEEEECCCCeEEEEeCCCc--------------cCCCcCeEECCCCCEEEeC--------CC
Confidence 4677777652 2468899987765 6543211 0122233333477888832 13
Q ss_pred eEEEEECCCC-ceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC-cEEEeeCCCCCCCc-c
Q 008260 273 QVKVFDLQTC-SWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM-TWDEIDAVGVPPSP-R 348 (572)
Q Consensus 273 ~v~~yd~~~~-~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~v~~~g~~p~~-R 348 (572)
.|..||+... .|+.-. +.....+++... ++++++..... ...++.+|++.. .|+.....+ .+.+ .
T Consensus 57 ~V~~~d~~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~-~~~~~~ 125 (276)
T 3no2_A 57 GAKMITRDGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETG-IERPHA 125 (276)
T ss_dssp EEEEECTTSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCS-CSSGGG
T ss_pred CEEEECCCCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCC-CCcccc
Confidence 5899998332 365432 111123344444 55665554321 235788887554 344322111 1111 1
Q ss_pred cceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC-cEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCE
Q 008260 349 SDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM-EWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDV 427 (572)
Q Consensus 349 ~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~-~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~ 427 (572)
..+.+....++.+++....+ ..+.+||++-+ .|+.-.. ..-+++..+.+ +.
T Consensus 126 ~~~~v~~~~~G~~lv~~~~~-----~~v~~~d~~G~~~w~~~~~-------~~~~~~~~~~~----------------g~ 177 (276)
T 3no2_A 126 QFRQINKNKKGNYLVPLFAT-----SEVREIAPNGQLLNSVKLS-------GTPFSSAFLDN----------------GD 177 (276)
T ss_dssp SCSCCEECTTSCEEEEETTT-----TEEEEECTTSCEEEEEECS-------SCCCEEEECTT----------------SC
T ss_pred cccCceECCCCCEEEEecCC-----CEEEEECCCCCEEEEEECC-------CCccceeEcCC----------------CC
Confidence 11222334444466655422 46999998733 3654321 11234444432 15
Q ss_pred EEEEcCCCCCccCcEEEEeCCCC
Q 008260 428 IVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 428 l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
+++.+..+ ..|..||+.+.
T Consensus 178 ~~v~~~~~----~~v~~~d~~tG 196 (276)
T 3no2_A 178 CLVACGDA----HCFVQLNLESN 196 (276)
T ss_dssp EEEECBTT----SEEEEECTTTC
T ss_pred EEEEeCCC----CeEEEEeCcCC
Confidence 66666543 24888888854
No 200
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=85.26 E-value=1.2 Score=48.11 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=57.2
Q ss_pred HHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCC--CCCC------hh---------------
Q 008260 15 RFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKP--SSWS------PV--------------- 71 (572)
Q Consensus 15 ~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p--~~~~------~~--------------- 71 (572)
-|.++..-+- .+.-..+.|+.++|=||.-|+..||++.... .+-+ +.
T Consensus 324 ly~Q~~~dil----------~G~~~~~~e~a~~LAAl~lQ~~~GD~~~~~~~~~l~~~lP~~~l~~~~~~~~k~~s~~~~ 393 (555)
T 3au4_A 324 MFEQAHEAVI----------HGHHPAPEENLQVLAALRLQYLQGDYTLHAAIPPLEEVYSLQRLKARISQSTKTFSFRTG 393 (555)
T ss_dssp HHHHHHHHHH----------TTCSCCCHHHHHHHHHHHHHHHHCSCCTTCCCCCGGGTSCCHHHHHHHHHTTCCEECCTT
T ss_pred hHHHHHHHHH----------CCCCCCCHHHHHHHHHHHHHHHcCCCccccchhhhhhhCCHHHhhhhhcccccccccccc
Confidence 3566666663 3345678999999999999999999875421 1100 00
Q ss_pred ------------------------hhHhHHHhhcCCCCCHHHHHHHHHHHHHHhCCCccc
Q 008260 72 ------------------------EQSKWKSWQGLGNMATTEAMRLFVKILEEEDPGWYS 107 (572)
Q Consensus 72 ------------------------~~~k~~aW~~~~~~~~~~a~~~yi~~~~~~~p~~~~ 107 (572)
.+.=-+.|+++.||+++|||.+|++++.++ |.|..
T Consensus 394 ~l~~~~~~~~~~~~~W~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL~~~~~l-p~yG~ 452 (555)
T 3au4_A 394 SVVRQKVEEEQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAKYMALIKEW-PGYGS 452 (555)
T ss_dssp SCCEECCCCHHHHHHHTHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTS-TTTTC
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCcCc
Confidence 111135788999999999999999999877 65543
No 201
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=85.11 E-value=35 Score=34.59 Aligned_cols=153 Identities=13% Similarity=0.080 Sum_probs=83.7
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
++.||+.... ...|.++|+.+.+-..+...+. ..+ .++. ++.||+...... ..++++|+.+
T Consensus 141 ~g~lyv~d~~------~~~I~~id~~~g~~~~~~~~~~-----~~~-ia~~~~g~~l~~~d~~~~-----~~I~~~d~~~ 203 (409)
T 3hrp_A 141 NNTVLAYQRD------DPRVRLISVDDNKVTTVHPGFK-----GGK-PAVTKDKQRVYSIGWEGT-----HTVYVYMKAS 203 (409)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEEEETCC-----BCB-CEECTTSSEEEEEBSSTT-----CEEEEEEGGG
T ss_pred CCCEEEEecC------CCcEEEEECCCCEEEEeeccCC-----CCc-eeEecCCCcEEEEecCCC-----ceEEEEEcCC
Confidence 6889998653 2369999999887776653211 122 3332 456776643211 1699999875
Q ss_pred Cc-EEEeeCCCCCCCcccceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccc-c-EEEEEC
Q 008260 333 MT-WDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAG-H-AGVTIG 408 (572)
Q Consensus 333 ~~-W~~v~~~g~~p~~R~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~-~-~~~~~~ 408 (572)
.. ...+.... .+....-+++++.. ++.||+... ...+++||+.+.....+...+........ . .+++..
T Consensus 204 ~~~~~~~g~~~-~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 204 GWAPTRIGQLG-STFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp TTCEEEEEECC-TTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred CceeEEeeecc-chhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence 43 23331110 01222334555555 678998432 14699999988776555221111111222 1 455554
Q ss_pred CccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 409 ENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 409 ~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
+ .+.||+.-.. .+.|++|++...
T Consensus 277 ~---------------~g~lyv~d~~----~~~I~~~~~~g~ 299 (409)
T 3hrp_A 277 V---------------DSNFYMSDQN----LSSVYKITPDGE 299 (409)
T ss_dssp T---------------TTEEEEEETT----TTEEEEECTTCC
T ss_pred C---------------CCEEEEEeCC----CCEEEEEecCCC
Confidence 2 2378886432 346888887654
No 202
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=84.99 E-value=46 Score=35.85 Aligned_cols=129 Identities=19% Similarity=0.193 Sum_probs=69.5
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEc-CCC--cEEEeeecccccCCCCCCCCCCCCCc---ceeEEE--eCCE---
Q 008260 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDL-RSW--AWSKIQAKAVAESTESPSPALLTPCA---GHSLIP--WENK--- 257 (572)
Q Consensus 189 ~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~-~t~--~W~~~~~~~~~~~~~~~~~~~p~~R~---~hs~~~--~~~~--- 257 (572)
.+-++.++.||+.+.. .+.++.+|. .+. .|+.-...... ..+..++ ....+. .+++
T Consensus 56 ~tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~--------~~~~~~~~~~~~g~av~p~~g~~~~ 122 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPA--------ARAVACCDLVNRGLAYWPGDGKTPA 122 (599)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGG--------GGGGCSSCSCCCCCEEECCCSSSCC
T ss_pred eccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCcc--------ccccccccccccceEEEecCCccee
Confidence 4556779999998652 246999999 765 48764332100 0000111 123344 5666
Q ss_pred -EEEEeccCCCCCcceeEEEEECCCCc--eEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCc
Q 008260 258 -LLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (572)
Q Consensus 258 -iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 334 (572)
||+... ...+..+|..+.+ |+.-... ..+......+-++.++.||+-.+... ......++.||..+.+
T Consensus 123 rV~v~t~-------dg~l~AlDa~TG~~~W~~~~~~-~~~~~~~~ssP~v~~g~V~vg~~g~e-~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 123 LILKTQL-------DGNVAALNAETGETVWKVENSD-IKVGSTLTIAPYVVKDKVIIGSSGAE-LGVRGYLTAYDVKTGE 193 (599)
T ss_dssp EEEEECT-------TSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEETTEEEECCBCGG-GTCCCEEEEEETTTCC
T ss_pred EEEEEcC-------CCEEEEEECCCCCEEEeecCCC-CCccceeecCCEEECCEEEEEecccc-cCCCCeEEEEECCCCc
Confidence 777532 1368999987764 8754211 00000111223456888776432111 1124579999998764
Q ss_pred --EEEee
Q 008260 335 --WDEID 339 (572)
Q Consensus 335 --W~~v~ 339 (572)
|+.-.
T Consensus 194 ~~W~~~~ 200 (599)
T 1w6s_A 194 QVWRAYA 200 (599)
T ss_dssp EEEEEES
T ss_pred EEEEEcC
Confidence 87653
No 203
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=84.69 E-value=42 Score=35.14 Aligned_cols=105 Identities=12% Similarity=0.127 Sum_probs=59.1
Q ss_pred CEEEEEecc-CCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 256 NKLLSIAGH-TKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 256 ~~iyv~GG~-~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
+..++.|+. +. .+.+||..+.+... .. .........+..+ ++++++.|+.+ ..+.+||+.+
T Consensus 456 ~~~l~~~~~~d~------~i~~~~~~~~~~~~-~~---~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~~ 519 (615)
T 1pgu_A 456 QNYVAVGLEEGN------TIQVFKLSDLEVSF-DL---KTPLRAKPSYISISPSETYIAAGDVM------GKILLYDLQS 519 (615)
T ss_dssp SSEEEEEETTTS------CEEEEETTEEEEEE-EC---SSCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred CCEEEEeecCCC------eEEEEECCCccccc-cc---cCCccCceEEEEECCCCCEEEEcCCC------CeEEEeeCCC
Confidence 666666665 43 58899998876543 11 1111222223333 66777788754 3488999877
Q ss_pred CcEEEeeCCCCCCCcccceEEEEEc----------CCEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 333 MTWDEIDAVGVPPSPRSDHAAAVHA----------ERYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 333 ~~W~~v~~~g~~p~~R~~~~~~~~~----------~~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
.+-... .. ......-.+++... ++.+++.|+.+ ..+.+||+.+.
T Consensus 520 ~~~~~~--~~-~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~ 573 (615)
T 1pgu_A 520 REVKTS--RW-AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD-----TNIFIYSVKRP 573 (615)
T ss_dssp TEEEEC--CS-CCCSSCEEEEEECCCC------CCSCCEEEEEETT-----SCEEEEESSCT
T ss_pred CcceeE--ee-cCCCCceeEEEEcCccccccccccCCCEEEEEcCC-----CcEEEEECCCC
Confidence 654322 20 00122222333334 55688888765 46899998875
No 204
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=84.58 E-value=29 Score=33.24 Aligned_cols=104 Identities=14% Similarity=0.270 Sum_probs=54.6
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE----CCEEEEEecCCCCCCCCCceEEEEC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV----GTSLVIFGGEDAKRSLLNDLHILDL 330 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~ 330 (572)
++.+++.|+.+. .+.+||+.+.+-..... . ...-.+++.. ++..++.|+.+ ..+.+||+
T Consensus 179 ~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~ 241 (357)
T 3i2n_A 179 EERVVCAGYDNG------DIKLFDLRNMALRWETN---I--KNGVCSLEFDRKDISMNKLVATSLE------GKFHVFDM 241 (357)
T ss_dssp CCCEEEEEETTS------EEEEEETTTTEEEEEEE---C--SSCEEEEEESCSSSSCCEEEEEEST------TEEEEEEE
T ss_pred CCCEEEEEccCC------eEEEEECccCceeeecC---C--CCceEEEEcCCCCCCCCEEEEECCC------CeEEEEeC
Confidence 667777776543 58899998876433321 1 1122333333 45666777653 34777776
Q ss_pred CCCc----EEEeeCCCCCCCcccceEEEEEcCCE-EEEEeCCCCCcCcCcEEEEECCC
Q 008260 331 ETMT----WDEIDAVGVPPSPRSDHAAAVHAERY-LLIFGGGSHAACFNDLHVLDLQT 383 (572)
Q Consensus 331 ~t~~----W~~v~~~g~~p~~R~~~~~~~~~~~~-lyv~GG~~~~~~~~~v~~yd~~t 383 (572)
.+.+ +...... .....-.++....++. +++.|+.+ ..+.+||+.+
T Consensus 242 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 291 (357)
T 3i2n_A 242 RTQHPTKGFASVSEK---AHKSTVWQVRHLPQNRELFLTAGGA-----GGLHLWKYEY 291 (357)
T ss_dssp EEEETTTEEEEEEEE---CCSSCEEEEEEETTEEEEEEEEETT-----SEEEEEEEEC
T ss_pred cCCCcccceeeeccC---CCcCCEEEEEECCCCCcEEEEEeCC-----CcEEEeecCC
Confidence 5422 1111000 1112223444455555 77777764 3577777654
No 205
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=84.50 E-value=22 Score=33.75 Aligned_cols=107 Identities=15% Similarity=0.086 Sum_probs=54.7
Q ss_pred eEEEEECCCCceEEeccCCCCCCCC-cceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCC-Ccc
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSR-GGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPP-SPR 348 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R-~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p-~~R 348 (572)
.|.++|+.+.+-...-. .+... .-+.+++. ++.+|+.+.. .+.++++|+.+.+-...-..+... ...
T Consensus 12 ~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVIT---IADAGPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTTEEEEEEE---CTTCTTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred eEEEEECCCCcEEEEEE---cCCCCCCccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 68999998876544321 11110 12233333 3477777643 346999999887654322221100 000
Q ss_pred cceEEEEEcC-CEEEEEeCC---CCCc---CcCcEEEEECCCCcEEe
Q 008260 349 SDHAAAVHAE-RYLLIFGGG---SHAA---CFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 349 ~~~~~~~~~~-~~lyv~GG~---~~~~---~~~~v~~yd~~t~~W~~ 388 (572)
.-+.+++..+ +.||+.... .... .-+.+++||+.+.+...
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 1223444434 467766421 0011 12679999998876554
No 206
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=84.36 E-value=7 Score=43.41 Aligned_cols=110 Identities=11% Similarity=0.062 Sum_probs=63.8
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++.||++||... -+.+||+.+.+++.+... .++......++... ++.|++ |.. +.+.+||+.+.
T Consensus 482 ~g~lWi~~~t~~------Gl~~~d~~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~lWi-gt~-------~Gl~~~~~~~~ 546 (758)
T 3ott_A 482 EGNVWVLLYNNK------GIDKINPRTREVTKLFAD-ELTGEKSPNYLLCDEDGLLWV-GFH-------GGVMRINPKDE 546 (758)
T ss_dssp TSCEEEEETTCS------SEEEEETTTTEEEEECTT-TSCGGGCEEEEEECTTSCEEE-EET-------TEEEEECC--C
T ss_pred CCCEEEEccCCC------CcEEEeCCCCceEEecCC-CcCCCcccceEEECCCCCEEE-Eec-------CceEEEecCCC
Confidence 578999777542 488999999999887422 12111111222222 567885 331 24899999888
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
+++.....+ .|. ..-.+.+ ..++.|++... +.+.+||+++.+....
T Consensus 547 ~~~~~~~~g-l~~-~~i~~i~-~~~g~lWi~t~-------~Gl~~~~~~~~~~~~~ 592 (758)
T 3ott_A 547 SQQSISFGS-FSN-NEILSMT-CVKNSIWVSTT-------NGLWIIDRKTMDARQQ 592 (758)
T ss_dssp CCCBCCCCC-----CCEEEEE-EETTEEEEEES-------SCEEEEETTTCCEEEC
T ss_pred ceEEecccC-CCc-cceEEEE-ECCCCEEEECC-------CCeEEEcCCCceeEEe
Confidence 876653221 222 2222333 34666887653 5599999999887654
No 207
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=84.35 E-value=24 Score=32.02 Aligned_cols=152 Identities=13% Similarity=0.099 Sum_probs=79.5
Q ss_pred eEEEeCCEEEEEeccCCCCCcceeEEEEECCCC--ceE--EeccC-CCCCCCCcceEEEEE--CCEEEEEecCCCCCCCC
Q 008260 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTC--SWS--TLKTY-GKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLL 322 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~--~~~~~-g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~ 322 (572)
+++.+++++|+|=|. .+|+++.... ... .++.. ..+|.. --++... ++++|+|-|
T Consensus 11 Ai~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~~--IDAa~~~~~~~~~yfFkG-------- 72 (195)
T 1itv_A 11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG-------- 72 (195)
T ss_dssp EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET--------
T ss_pred EEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCCC--ccEEEEECCCCeEEEEeC--------
Confidence 345579999999775 4677766542 221 11110 123432 2233333 678999976
Q ss_pred CceEEEECCCCcE-EEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe-----ec-cCCCC
Q 008260 323 NDLHILDLETMTW-DEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR-----PT-QQGEI 395 (572)
Q Consensus 323 ~~v~~yd~~t~~W-~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-----v~-~~g~~ 395 (572)
+..|+|+..+..- ..+...|-+.....--++....++++|+|=| +..|+||..+++-.. +. .-..+
T Consensus 73 ~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~w~Gv 145 (195)
T 1itv_A 73 RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPGV 145 (195)
T ss_dssp TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTTS
T ss_pred CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhcCCCC
Confidence 3477787542111 1122223222111222333344678999988 678999987754221 11 00012
Q ss_pred CCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCc
Q 008260 396 PTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 396 p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
| ..-.++....+ .+|.|-| +..|.||..+..
T Consensus 146 p--~~idaa~~~~g-----------------~~Yffkg------~~y~~~~~~~~~ 176 (195)
T 1itv_A 146 P--LDTHDVFQFRE-----------------KAYFCQD------RFYWRVSSRSEL 176 (195)
T ss_dssp C--SSCSEEEEETT-----------------EEEEEET------TEEEEEECCTTC
T ss_pred C--CCCCEEEEeCC-----------------eEEEEeC------CEEEEEECCccE
Confidence 2 11234444433 7999987 568899876653
No 208
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=84.03 E-value=38 Score=36.14 Aligned_cols=122 Identities=14% Similarity=0.147 Sum_probs=66.4
Q ss_pred EEeCCEEEEEeccCCCCCcceeEEEEEC-CCC--ceEEeccCCCCCC--C---CcceEEEEECCEEEEEecCCCCCCCCC
Q 008260 252 IPWENKLLSIAGHTKDPSEIIQVKVFDL-QTC--SWSTLKTYGKPPV--S---RGGQSVTLVGTSLVIFGGEDAKRSLLN 323 (572)
Q Consensus 252 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~-~~~--~W~~~~~~g~~p~--~---R~~~~~~~~~~~iyv~GG~~~~~~~~~ 323 (572)
++.++.||+.... ...++.+|. .+. .|+.-........ . ....+.++.+++||+... -.
T Consensus 59 ~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg 125 (571)
T 2ad6_A 59 LVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NG 125 (571)
T ss_dssp EEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TS
T ss_pred EEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------CC
Confidence 4569999998653 136899998 664 4876532110000 0 112234567889887632 24
Q ss_pred ceEEEECCCC--cEEEeeCCCCCCCc-ccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC--cEEee
Q 008260 324 DLHILDLETM--TWDEIDAVGVPPSP-RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSRP 389 (572)
Q Consensus 324 ~v~~yd~~t~--~W~~v~~~g~~p~~-R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~v 389 (572)
.++.+|..+. .|+.-... .+.. ....+.++. ++.||+-.+......-..++.||.++. .|+.-
T Consensus 126 ~l~alD~~tG~~~W~~~~~~--~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 126 HLLALDAKTGKINWEVEVCD--PKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEEEEETTTCCEEEEEECCC--GGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCEEEEecCCC--CCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 5999998876 58754321 0111 111222334 565665433211111256999999865 48754
No 209
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=83.40 E-value=29 Score=34.58 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=61.2
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
+++.++.|+.+. .|.+||+.+.+-...-. .....-.+++.. ++..++.|+.+ ..+.++|+.+.
T Consensus 134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~~----~h~~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~~ 197 (393)
T 1erj_A 134 DGKFLATGAEDR------LIRIWDIENRKIVMILQ----GHEQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRTG 197 (393)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEEC----CCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTT
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcEEEEEc----cCCCCEEEEEEcCCCCEEEEecCC------CcEEEEECCCC
Confidence 677778887654 58899998876443321 111112233333 45556667653 35888998887
Q ss_pred cEEEeeCCCCCCCcccceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
+....-.. .....+++... ++.+++.|+.+ ..+.+||+.+..-.
T Consensus 198 ~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~s~d-----~~v~iwd~~~~~~~ 242 (393)
T 1erj_A 198 QCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLV 242 (393)
T ss_dssp EEEEEEEC-----SSCEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEE
T ss_pred eeEEEEEc-----CCCcEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCcEE
Confidence 65433221 11122333333 55688888765 45888998876543
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=83.30 E-value=22 Score=39.13 Aligned_cols=149 Identities=13% Similarity=0.083 Sum_probs=82.2
Q ss_pred cCcEEEEEcCCC--c-EEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCC--Cce
Q 008260 210 LSDMHILDLRSW--A-WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQT--CSW 284 (572)
Q Consensus 210 ~~~v~~yd~~t~--~-W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~--~~W 284 (572)
.++++++|+.+. . |..+.... ... ...+...++.||+..... .....++.+|+.+ ..|
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~-------------~~~-~~~~~~dg~~l~~~s~~~---~~~~~l~~~d~~~~~~~~ 355 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDL-------------KAQ-WDFVDGVGDQLWFVSGDG---APLKKIVRVDLSGSTPRF 355 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSS-------------SSC-EEEEEEETTEEEEEECTT---CTTCEEEEEECSSSSCEE
T ss_pred cceEEEEECCCCCCcccEEecCCC-------------Cce-EEEEeccCCEEEEEECCC---CCCCEEEEEeCCCCcccc
Confidence 568999998876 6 77775421 111 112224567788775542 2245799999887 579
Q ss_pred EEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEE-cCCEEEE
Q 008260 285 STLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLI 363 (572)
Q Consensus 285 ~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~-~~~~lyv 363 (572)
+.+.+. ... .-..+...+++|++....++ ...++++|+....-..+.. |........... .++.|++
T Consensus 356 ~~l~~~--~~~--~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~~----~~~~~v~~~~~s~d~~~l~~ 423 (741)
T 1yr2_A 356 DTVVPE--SKD--NLESVGIAGNRLFASYIHDA----KSQVLAFDLDGKPAGAVSL----PGIGSASGLSGRPGDRHAYL 423 (741)
T ss_dssp EEEECC--CSS--EEEEEEEEBTEEEEEEEETT----EEEEEEEETTSCEEEECBC----SSSCEEEEEECCBTCSCEEE
T ss_pred EEEecC--CCC--eEEEEEEECCEEEEEEEECC----EEEEEEEeCCCCceeeccC----CCCeEEEEeecCCCCCEEEE
Confidence 888532 111 11233445788888766543 3458899976554444421 211111111111 2232333
Q ss_pred E-eCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 364 F-GGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 364 ~-GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
. .+. ..-..++.||+.+.+.+.+.
T Consensus 424 ~~ss~---~~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 424 SFSSF---TQPATVLALDPATAKTTPWE 448 (741)
T ss_dssp EEEET---TEEEEEEEEETTTTEEEECS
T ss_pred EEcCC---CCCCEEEEEECCCCcEEEEe
Confidence 2 221 12256999999998877664
No 211
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=83.04 E-value=29 Score=32.05 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=81.4
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCCc-EEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCC
Q 008260 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA-WSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKD 267 (572)
Q Consensus 190 s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~ 267 (572)
+++.+.+++|+|=| +.+|+++..... ........ .-+.+| .....+... .++++|+|-|.
T Consensus 35 Ai~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~-------~wp~lp-~~IDAA~~~~~~~k~yfFkG~--- 96 (218)
T 1gen_A 35 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVAT-------FWPELP-EKIDAVYEAPQEEKAVFFAGN--- 96 (218)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGG-------TCTTSC-SCCSEEEEETTTTEEEEEETT---
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHH-------hcCCCC-CCccEEEEECCCCEEEEEeCC---
Confidence 44557899999977 357777655422 21111100 011222 233333332 26899999774
Q ss_pred CCcceeEEEEECCCCc---eEEeccCCCCCCC-CcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEE-----
Q 008260 268 PSEIIQVKVFDLQTCS---WSTLKTYGKPPVS-RGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWD----- 336 (572)
Q Consensus 268 ~~~~~~v~~yd~~~~~---W~~~~~~g~~p~~-R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~----- 336 (572)
..|+||..+.. =..+...| .|.. ..-.++... ++++|+|=| +..|+||..+.+-.
T Consensus 97 -----~yW~y~~~~~~~gyPk~I~~~g-~p~~~~~IDAAf~~~~~g~~YfFkG--------~~ywr~d~~~~~v~~gyPr 162 (218)
T 1gen_A 97 -----EYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG--------DKFWRYNEVKKKMDPGFPK 162 (218)
T ss_dssp -----EEEEEETTEECTTCSEEGGGGT-CCTTCCCCSEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCE
T ss_pred -----EEEEEcCccccCCCCccHhhcC-CCCCcCCccEEEEEcCCCeEEEEEC--------CEEEEEECccccccCCCCc
Confidence 68888853110 01122112 2221 122334443 689999966 35889998765321
Q ss_pred EeeCCCCCCCcccceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 337 EIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 337 ~v~~~g~~p~~R~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
.+... -+..+..-.++.... ++.+|.|=| +..|+||..+..
T Consensus 163 ~i~~~-w~g~p~~idaAf~~~~~g~~YfFkg-------~~y~~~~~~~~~ 204 (218)
T 1gen_A 163 LIADA-WNAIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 204 (218)
T ss_dssp EHHHH-SSSCCSSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred chhhc-cCCCCCCCCEEEEEcCCCcEEEEEC-------CEEEEEECCcee
Confidence 11100 011223334555444 468999988 678999987654
No 212
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=82.95 E-value=34 Score=32.80 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=60.0
Q ss_pred CEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 256 NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 256 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
+.+++.|+.++ .+.+||+.+.+-...-. .....-.++... ++.+++.|+.+ ..+.+||+.+.
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITMQCIKHYV----GHGNAINELKFHPRDPNLLLSVSKD------HALRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTCCEEEEEE----SCCSCEEEEEECSSCTTEEEEEETT------SCEEEEETTTT
T ss_pred CCEEEEecCCC------EEEEEEchhceEeeeec----CCCCcEEEEEECCCCCCEEEEEeCC------CeEEEEEeecC
Confidence 57888887654 58899988765332211 011112223332 45677787763 34899999877
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
+-...-.. .......-.+++...++..++.|+.+ ..+.+||+.+.+
T Consensus 149 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 194 (366)
T 3k26_A 149 TLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLWRINSKR 194 (366)
T ss_dssp EEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESCSHH
T ss_pred eEEEEecc-cccccCceeEEEECCCCCEEEEecCC-----CCEEEEECCCCc
Confidence 65443210 00122222334444455577777754 468889987653
No 213
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=82.53 E-value=59 Score=35.20 Aligned_cols=150 Identities=11% Similarity=0.135 Sum_probs=76.3
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++.+++.|+.+. .|.++|+.+.+-...-. + ....-.+++.. ++..++.|+.++ .+.++|....
T Consensus 441 ~g~~l~sgs~Dg------~v~vwd~~~~~~~~~~~-~---h~~~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~~~ 504 (694)
T 3dm0_A 441 DGQFALSGSWDG------ELRLWDLAAGVSTRRFV-G---HTKDVLSVAFSLDNRQIVSASRDR------TIKLWNTLGE 504 (694)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEE-C---CSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSC
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcceeEEe-C---CCCCEEEEEEeCCCCEEEEEeCCC------EEEEEECCCC
Confidence 667777887654 58899988765332211 0 11111223332 456667777543 4777776554
Q ss_pred cEEEeeCCCCCCCcccceEEEEE-cC--CEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCc
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVH-AE--RYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGEN 410 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~-~~--~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~ 410 (572)
.-..+...+ ...+....++.+ .+ ..+++.|+.+ ..|.++|+.+.+-...- ........++.+..
T Consensus 505 ~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~vwd~~~~~~~~~~-----~~h~~~v~~v~~sp- 571 (694)
T 3dm0_A 505 CKYTISEGG--EGHRDWVSCVRFSPNTLQPTIVSASWD-----KTVKVWNLSNCKLRSTL-----AGHTGYVSTVAVSP- 571 (694)
T ss_dssp EEEEECSST--TSCSSCEEEEEECSCSSSCEEEEEETT-----SCEEEEETTTCCEEEEE-----CCCSSCEEEEEECT-
T ss_pred cceeeccCC--CCCCCcEEEEEEeCCCCcceEEEEeCC-----CeEEEEECCCCcEEEEE-----cCCCCCEEEEEEeC-
Confidence 332332210 111122222233 22 2367777755 46889998876544321 11111112222221
Q ss_pred cccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCc
Q 008260 411 WFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 411 ~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
.+.+++.||.++. |.+||+.+..
T Consensus 572 --------------dg~~l~sg~~Dg~----i~iwd~~~~~ 594 (694)
T 3dm0_A 572 --------------DGSLCASGGKDGV----VLLWDLAEGK 594 (694)
T ss_dssp --------------TSSEEEEEETTSB----CEEEETTTTE
T ss_pred --------------CCCEEEEEeCCCe----EEEEECCCCc
Confidence 2267888887754 7788877653
No 214
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=82.46 E-value=56 Score=34.89 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=79.6
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CC-EEEEEeccCCCCCcceeEEEEECCCCceEEec
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-EN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK 288 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 288 (572)
+.++..|........+... +..+.-|..... ++ ++|+.... .+.|.++|+.+.+-...-
T Consensus 320 g~v~~vd~~~~~~~~v~~i-------------~~~~~~~d~~~~pdgr~~~va~~~------sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEI-------------SAERFLHDGGLDGSHRYFITAANA------RNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp TEEEEEETTCSSEEEEEEE-------------ECCSSEEEEEECTTSCEEEEEEGG------GTEEEEEETTTTEEEEEE
T ss_pred CeEEEEecCCCccceeeee-------------eccccccCceECCCCCEEEEEeCC------CCeEEEEECCCCcEEEEE
Confidence 5678888777665554443 245555655443 33 44444322 357999999998755444
Q ss_pred cC-CCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCc-----EEEeeCCCCCCCc-ccceEEEEE-cC
Q 008260 289 TY-GKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMT-----WDEIDAVGVPPSP-RSDHAAAVH-AE 358 (572)
Q Consensus 289 ~~-g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-----W~~v~~~g~~p~~-R~~~~~~~~-~~ 358 (572)
.. +..|.+..+... .. .+.+|+.+-.. .+.|.++|.++.. |+.+... +.. ......... ++
T Consensus 381 ~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g-----~~~Vsvid~~~~~~~~~~~kvv~~i---~~~g~g~~~i~~~p~~ 451 (567)
T 1qks_A 381 DTGGQTPHPGRGANF-VHPTFGPVWATSHMG-----DDSVALIGTDPEGHPDNAWKILDSF---PALGGGSLFIKTHPNS 451 (567)
T ss_dssp ECSSSSBCCTTCEEE-EETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEE---ECSCSCCCCEECCTTC
T ss_pred eccCcCCCCccceee-ECCCCCcEEEeCCCC-----CCeEEEecCCCCCCccccCEEEEEE---ecCCCCCEEEEeCCCC
Confidence 44 455655434332 23 36777765321 2458888877633 8766544 111 111112233 34
Q ss_pred CEEEEEeCCCCC-cCcCcEEEEECCCC
Q 008260 359 RYLLIFGGGSHA-ACFNDLHVLDLQTM 384 (572)
Q Consensus 359 ~~lyv~GG~~~~-~~~~~v~~yd~~t~ 384 (572)
.++||---.+.. ...+.|.+||..+.
T Consensus 452 ~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 452 QYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp SEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CeEEEecCCCCCcccCceEEEEECCcc
Confidence 578884321111 12367999998765
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=82.24 E-value=38 Score=32.82 Aligned_cols=113 Identities=9% Similarity=0.004 Sum_probs=63.1
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEE-ECCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++.+|+++-.. ..+++||+.+.+...+.. +. .-.+.+. -++++|+... +.+++||+.+.
T Consensus 60 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~~----~~--~v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g 119 (326)
T 2ghs_A 60 SGTAWWFNILE------RELHELHLASGRKTVHAL----PF--MGSALAKISDSKQLIASD--------DGLFLRDTATG 119 (326)
T ss_dssp TTEEEEEEGGG------TEEEEEETTTTEEEEEEC----SS--CEEEEEEEETTEEEEEET--------TEEEEEETTTC
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEEC----CC--cceEEEEeCCCeEEEEEC--------CCEEEEECCCC
Confidence 36888886543 368999999887665532 21 1222333 3678877541 34999999999
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeC-CCCCcCcCcEEEEECCCCcEEee
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGG-GSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG-~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
+.+.+...............++..++.+|+... .........+++|| +.+...+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 120 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 888775431101111222344444556776432 11112235699999 4565554
No 216
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=81.66 E-value=43 Score=33.06 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=59.9
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCC--ceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTC--SWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLE 331 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~ 331 (572)
++.+++.|+.+. .|.+||+... .-..+. + ....-.+++.. ++..++.|+.++ .+.++|+.
T Consensus 217 ~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~--~---h~~~v~~v~~~p~~~~l~s~s~D~------~i~lwd~~ 279 (380)
T 3iz6_a 217 NANMFISGSCDT------TVRLWDLRITSRAVRTYH--G---HEGDINSVKFFPDGQRFGTGSDDG------TCRLFDMR 279 (380)
T ss_dssp SCCEEEEEETTS------CEEEEETTTTCCCCEEEC--C---CSSCCCEEEECTTSSEEEEECSSS------CEEEEETT
T ss_pred CCCEEEEEECCC------eEEEEECCCCCcceEEEC--C---cCCCeEEEEEecCCCeEEEEcCCC------eEEEEECC
Confidence 667888888765 4888887632 222221 0 01111223333 556777887643 48889988
Q ss_pred CCcEEEeeCCCCC--CCc-ccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 332 TMTWDEIDAVGVP--PSP-RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 332 t~~W~~v~~~g~~--p~~-R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
+..-...-..... ... ..-.+++...++.+++.|+.+ ..+.+||..+.+-.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----g~i~vwd~~~~~~~ 333 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN-----GDCYVWDTLLAEMV 333 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT-----SCEEEEETTTCCEE
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC-----CCEEEEECCCCceE
Confidence 7654333221000 000 012234444455577777654 46899998776543
No 217
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=81.39 E-value=40 Score=32.56 Aligned_cols=213 Identities=12% Similarity=0.018 Sum_probs=107.1
Q ss_pred eEEEE-CCEEEEEccCCCCcccCcEEEEEcCCC--cEEEeeecccccCCCCCCCCCCCCC-cceeEEEe--CCEEEEEec
Q 008260 190 GAAVV-QDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPC-AGHSLIPW--ENKLLSIAG 263 (572)
Q Consensus 190 s~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~R-~~hs~~~~--~~~iyv~GG 263 (572)
.+++. +++||+.... ...+.+||+... .-..+...... ....... .-..++.. ++.||+..+
T Consensus 95 gia~d~~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~-------g~~~~~~~~P~~ia~~~~~g~lyv~d~ 162 (329)
T 3fvz_A 95 GLSIDTDGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQP-------GSDQNHFCQPTDVAVEPSTGAVFVSDG 162 (329)
T ss_dssp EEEECTTSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBC-------CCSTTCCSSEEEEEECTTTCCEEEEEC
T ss_pred EEEECCCCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCC-------CCCccccCCCcEEEEeCCCCeEEEEeC
Confidence 34443 5678887642 246889998665 22222211100 0000111 11233333 689999976
Q ss_pred cCCCCCcceeEEEEECCCCceEEeccCCCC----CCCC-cceEEEEE-C-CEEEEEecCCCCCCCCCceEEEECCCCcEE
Q 008260 264 HTKDPSEIIQVKVFDLQTCSWSTLKTYGKP----PVSR-GGQSVTLV-G-TSLVIFGGEDAKRSLLNDLHILDLETMTWD 336 (572)
Q Consensus 264 ~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~----p~~R-~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~ 336 (572)
.. ...|.+||+....-..+...+.. +... .-+++++. + +.|||.... .+.|.+||+++.+..
T Consensus 163 ~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------~~~I~~~~~~~G~~~ 231 (329)
T 3fvz_A 163 YC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------NGRIQCFKTDTKEFV 231 (329)
T ss_dssp SS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------TTEEEEEETTTCCEE
T ss_pred CC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------CCEEEEEECCCCcEE
Confidence 32 23689999665544444322211 1111 12344444 3 799998653 356999999866654
Q ss_pred EeeCCCCCCCcccceEEEEEcCCEEEEEeCCCC--CcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccc
Q 008260 337 EIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH--AACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLG 414 (572)
Q Consensus 337 ~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG 414 (572)
..-.. ......-.+.+... +.+|+..|... ...-..++++|+.+.+....-..+ ......-++.+ +..
T Consensus 232 ~~~~~--~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~~p~~ia-~~~----- 301 (329)
T 3fvz_A 232 REIKH--ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-RKHFDMPHDIV-ASE----- 301 (329)
T ss_dssp EEECC--TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-SSCCSSEEEEE-ECT-----
T ss_pred EEEec--cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-CCccCCeeEEE-ECC-----
Confidence 44322 11222222333444 56777776321 222347999998887765542100 01111122333 332
Q ss_pred eeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCC
Q 008260 415 LSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSH 449 (572)
Q Consensus 415 ~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~ 449 (572)
.+.|||....+ +.|++|++..
T Consensus 302 ----------dG~lyvad~~~----~~I~~~~~~~ 322 (329)
T 3fvz_A 302 ----------DGTVYIGDAHT----NTVWKFTLTE 322 (329)
T ss_dssp ----------TSEEEEEESSS----CCEEEEEEEE
T ss_pred ----------CCCEEEEECCC----CEEEEEeCCc
Confidence 33788876544 4588888643
No 218
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=81.32 E-value=61 Score=34.63 Aligned_cols=124 Identities=17% Similarity=0.218 Sum_probs=67.8
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--cEEEeeecccccCCCCCCCCCCCCCc---ceeEEEeCCEEEEEec
Q 008260 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCA---GHSLIPWENKLLSIAG 263 (572)
Q Consensus 189 ~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~R~---~hs~~~~~~~iyv~GG 263 (572)
.+-++.++.||+.... +.++.+|..+. .|+.-..... ...+++ ..+.+..+++||+...
T Consensus 62 ~~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~----------~~~~~~~~~~~g~a~~~~~v~~~t~ 125 (582)
T 1flg_A 62 SQAIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPD----------DIRPCCDVVNRGAAIYGDKVFFGTL 125 (582)
T ss_dssp CCCEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCT----------TCCCSSCSCCCCCEEETTEEEEEET
T ss_pred eccEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCc----------ccccccccCCCccEEECCEEEEEeC
Confidence 4456789999998652 24999999875 4876433210 000111 1234567889888532
Q ss_pred cCCCCCcceeEEEEECCCCc--eEEeccCCCCCCC-CcceEEEEECC------EEEEEecCCCCCCCCCceEEEECCCC-
Q 008260 264 HTKDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVS-RGGQSVTLVGT------SLVIFGGEDAKRSLLNDLHILDLETM- 333 (572)
Q Consensus 264 ~~~~~~~~~~v~~yd~~~~~--W~~~~~~g~~p~~-R~~~~~~~~~~------~iyv~GG~~~~~~~~~~v~~yd~~t~- 333 (572)
...+..+|..+.+ |+.-... .... ....+-++.++ .|| +|...........++.||+.+.
T Consensus 126 -------dg~l~AlD~~TG~~~W~~~~~~--~~~~~~~~~sP~v~~~~~~G~~~v~-vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 126 -------DASVVALNKNTGKVVWKKKFAD--HGAGYTMTGAPTIVKDGKTGKVLLI-HGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp -------TTEEEEEESSSCCEEEEEECSC--GGGTCBCCSCCEEEECTTTCCEEEE-ECCBCGGGCCBCEEEEECTTTCC
T ss_pred -------CCEEEEEECCCCCEEeeecCCC--CCcCcccccCCEEeCCCcCCcEEEE-EeccccccCCCCEEEEEECCCCC
Confidence 1368999998764 8765311 0000 01112233455 554 4432211112457999998865
Q ss_pred -cEEEe
Q 008260 334 -TWDEI 338 (572)
Q Consensus 334 -~W~~v 338 (572)
.|+.-
T Consensus 196 ~~W~~~ 201 (582)
T 1flg_A 196 EIWMRP 201 (582)
T ss_dssp EEEEEE
T ss_pred EEeecC
Confidence 48653
No 219
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=81.18 E-value=14 Score=36.31 Aligned_cols=111 Identities=6% Similarity=-0.064 Sum_probs=58.3
Q ss_pred ceeEEEEECCCCceEEeccCCCCCCCCcceEEEEEC--CE-EEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCc
Q 008260 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVG--TS-LVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSP 347 (572)
Q Consensus 271 ~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~--~~-iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~ 347 (572)
...++++|+.+.+...+... ........... +. |++... .........++++|+.+..+..+... ...
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~-----~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~ 237 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQD-----TAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKEH---AEG 237 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEE-----SSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSCC---CTT
T ss_pred cceEEEEECCCCcEEeeccC-----CcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeecc---CCC
Confidence 45799999998887766421 11122223322 43 544432 22211235799999988887766431 111
Q ss_pred ccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 348 RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 348 R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
..........++..+++...........++++|+.+.+...+.
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 280 (396)
T 3c5m_A 238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM 280 (396)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE
T ss_pred ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee
Confidence 1122233333443334433222222234999999988877664
No 220
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=81.04 E-value=41 Score=32.43 Aligned_cols=159 Identities=10% Similarity=0.154 Sum_probs=76.9
Q ss_pred EECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCc
Q 008260 193 VVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSE 270 (572)
Q Consensus 193 ~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~ 270 (572)
...+ +++.||.+ ..+.+||+.+..+..+..... .........+.+ ++.+++.|+.+.
T Consensus 22 ~s~~-~las~~~D-----~~i~lw~~~~~~~~~~~~~~~-----------~~h~~~v~~v~~sp~~~~las~s~D~---- 80 (330)
T 2hes_X 22 FSQG-ILATGSTD-----RKIKLVSVKYDDFTLIDVLDE-----------TAHKKAIRSVAWRPHTSLLAAGSFDS---- 80 (330)
T ss_dssp EETT-EEEEEESS-----SCEEEEECSSSCCEEEEEECT-----------TCCCSCEEEEEECTTSSEEEEEETTS----
T ss_pred cCCC-EEEEEcCC-----CEEEEEEecCCCeEEEEEEec-----------CCccCCEEEEEECCCCCEEEEEeCCC----
Confidence 3345 66666632 357888888765554433210 001111222222 567777887754
Q ss_pred ceeEEEEECCCC-----ceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCC--CcEEEeeCCC
Q 008260 271 IIQVKVFDLQTC-----SWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLET--MTWDEIDAVG 342 (572)
Q Consensus 271 ~~~v~~yd~~~~-----~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t--~~W~~v~~~g 342 (572)
.|.+||.... .+..+.... .....-.+++.. ++++++.|+.++ .+.++|+.. ..+..+....
T Consensus 81 --~v~iw~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~sp~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 81 --TVSIWAKEESADRTFEMDLLAIIE--GHENEVKGVAWSNDGYYLATCSRDK------SVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp --CEEEEEC-------CCCEEEEEEC------CEEEEEECTTSCEEEEEETTS------CEEEEECCTTCCCCEEEEEEC
T ss_pred --cEEEEEcccCcCccccceeEEEEc--CCCCcEEEEEECCCCCEEEEEeCCC------EEEEEeccCCCCCeEEEEEec
Confidence 4777776432 233222110 001111122222 466777777643 478888743 3444443220
Q ss_pred CCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 343 VPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 343 ~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
.....-.+++...++.+++.|+.+ ..+.++|..+..|..+
T Consensus 151 --~h~~~v~~v~~~p~~~~l~s~s~D-----~~i~iW~~~~~~~~~~ 190 (330)
T 2hes_X 151 --EHSQDVKHVIWHPSEALLASSSYD-----DTVRIWKDYDDDWECV 190 (330)
T ss_dssp --CCSSCEEEEEECSSSSEEEEEETT-----SCEEEEEEETTEEEEE
T ss_pred --cCCCceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCCeeEE
Confidence 111112233333455578888765 4577788777777655
No 221
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=80.94 E-value=31 Score=34.53 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=59.5
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++.+++.|+.+. .|.+||+.+.+-...-. ..+....-.+++.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 181 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~ 246 (437)
T 3gre_A 181 EKSLLVALTNLS------RVIIFDIRTLERLQIIE--NSPRHGAVSSICIDEECCVLILGTTR------GIIDIWDIRFN 246 (437)
T ss_dssp SCEEEEEEETTS------EEEEEETTTCCEEEEEE--CCGGGCCEEEEEECTTSCEEEEEETT------SCEEEEETTTT
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCeeeEEEc--cCCCCCceEEEEECCCCCEEEEEcCC------CeEEEEEcCCc
Confidence 477888887654 68999998765433221 11111112223322 56777778764 34889999876
Q ss_pred cEEEeeCCCCCCCcccceEEEEE----cCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVH----AERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~----~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
+....-.. +....-.+.+.. .++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 247 ~~~~~~~~---~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~ 296 (437)
T 3gre_A 247 VLIRSWSF---GDHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGHCQ 296 (437)
T ss_dssp EEEEEEBC---TTCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTEEE
T ss_pred cEEEEEec---CCCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCcEE
Confidence 54332211 111111112111 245566777654 45889998876643
No 222
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=80.64 E-value=51 Score=33.30 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=57.9
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEE-eccCCCCC-CCCcceEEEEE-C---CEEEEEecCCCCCCCCCceEEE
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWST-LKTYGKPP-VSRGGQSVTLV-G---TSLVIFGGEDAKRSLLNDLHIL 328 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~g~~p-~~R~~~~~~~~-~---~~iyv~GG~~~~~~~~~~v~~y 328 (572)
++..++.|+.+. .++.++..+..... ... .+. ....-.+++.. + +++++.|+.+ ..+.+|
T Consensus 160 ~~~~l~~~~~~g------~v~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vw 225 (450)
T 2vdu_B 160 DDTTVIIADKFG------DVYSIDINSIPEEKFTQE--PILGHVSMLTDVHLIKDSDGHQFIITSDRD------EHIKIS 225 (450)
T ss_dssp TSSEEEEEETTS------EEEEEETTSCCCSSCCCC--CSEECSSCEEEEEEEECTTSCEEEEEEETT------SCEEEE
T ss_pred CCCEEEEEeCCC------cEEEEecCCcccccccce--eeecccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEE
Confidence 566667776532 57888876654332 000 010 11111223332 5 7788888764 358889
Q ss_pred ECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 329 DLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 329 d~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
|+.+.+....-..+ ... .-.+++.. ++.+++.|+.+ ..|.+||+.+.+..
T Consensus 226 d~~~~~~~~~~~~~--h~~-~v~~~~~s-d~~~l~s~~~d-----~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 226 HYPQCFIVDKWLFG--HKH-FVSSICCG-KDYLLLSAGGD-----DKIFAWDWKTGKNL 275 (450)
T ss_dssp EESCTTCEEEECCC--CSS-CEEEEEEC-STTEEEEEESS-----SEEEEEETTTCCEE
T ss_pred ECCCCceeeeeecC--CCC-ceEEEEEC-CCCEEEEEeCC-----CeEEEEECCCCcEe
Confidence 98776543321111 111 11223333 44477777754 46889999887643
No 223
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=80.46 E-value=37 Score=31.56 Aligned_cols=195 Identities=9% Similarity=0.009 Sum_probs=105.6
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEecc
Q 008260 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGH 264 (572)
Q Consensus 189 ~s~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~ 264 (572)
+++++. +++||+.-.. .+.+++||+.+..-..+.... . ..-+.++.. ++.||+.-..
T Consensus 39 ~gi~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~-------------~-~~p~~ia~d~~~~~lyv~d~~ 99 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS-----EPSIGRASLHGGEPTTIIRQD-------------L-GSPEGIALDHLGRTIFWTDSQ 99 (267)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEESSSCCCEEEECTT-------------C-CCEEEEEEETTTTEEEEEETT
T ss_pred EEEEEecCCCEEEEEECC-----CCEEEEEecCCCCcEEEEECC-------------C-CCccEEEEEecCCeEEEEECC
Confidence 455554 5789987541 247999998876433332110 1 122334443 5799988543
Q ss_pred CCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCC
Q 008260 265 TKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVG 342 (572)
Q Consensus 265 ~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g 342 (572)
...|.++|+....-..+...+ .. .-...++. +++||+..... ..+.+++++++...-+.+...
T Consensus 100 ------~~~I~~~~~~g~~~~~~~~~~-~~---~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~~~- 164 (267)
T 1npe_A 100 ------LDRIEVAKMDGTQRRVLFDTG-LV---NPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILAQD- 164 (267)
T ss_dssp ------TTEEEEEETTSCSCEEEECSS-CS---SEEEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEECT-
T ss_pred ------CCEEEEEEcCCCCEEEEEECC-CC---CccEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEEEC-
Confidence 246889998765434443211 11 12334444 67999875321 135688998876544444322
Q ss_pred CCCCcccceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeec
Q 008260 343 VPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSS 421 (572)
Q Consensus 343 ~~p~~R~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~ 421 (572)
. ...-.+.++.. ++.||+.--.. +.|+++|+....-..+... ...| .+++..++
T Consensus 165 --~-~~~P~gia~d~~~~~lyv~d~~~-----~~I~~~~~~g~~~~~~~~~--~~~P---~gi~~d~~------------ 219 (267)
T 1npe_A 165 --N-LGLPNGLTFDAFSSQLCWVDAGT-----HRAECLNPAQPGRRKVLEG--LQYP---FAVTSYGK------------ 219 (267)
T ss_dssp --T-CSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTEEEEEEEEEC--CCSE---EEEEEETT------------
T ss_pred --C-CCCCcEEEEcCCCCEEEEEECCC-----CEEEEEecCCCceEEEecC--CCCc---eEEEEeCC------------
Confidence 1 12223444443 46798876432 5799999876433332211 2222 23444333
Q ss_pred cCCCCEEEEEcCCCCCccCcEEEEeCCCCc
Q 008260 422 YSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 422 ~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
.||+.-.. .+.|+++|+.+..
T Consensus 220 -----~lyva~~~----~~~v~~~d~~~g~ 240 (267)
T 1npe_A 220 -----NLYYTDWK----TNSVIAMDLAISK 240 (267)
T ss_dssp -----EEEEEETT----TTEEEEEETTTTE
T ss_pred -----EEEEEECC----CCeEEEEeCCCCC
Confidence 78875432 2568999987654
No 224
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=80.27 E-value=40 Score=34.12 Aligned_cols=159 Identities=11% Similarity=0.063 Sum_probs=77.6
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEE
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVK 275 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~ 275 (572)
+++++.|+.+ ..+.+||+.+.+....-... ........... ++.+++.|+.+. .|.
T Consensus 210 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~------------h~~~v~~~~~s-d~~~l~s~~~d~------~v~ 265 (450)
T 2vdu_B 210 HQFIITSDRD-----EHIKISHYPQCFIVDKWLFG------------HKHFVSSICCG-KDYLLLSAGGDD------KIF 265 (450)
T ss_dssp CEEEEEEETT-----SCEEEEEESCTTCEEEECCC------------CSSCEEEEEEC-STTEEEEEESSS------EEE
T ss_pred CcEEEEEcCC-----CcEEEEECCCCceeeeeecC------------CCCceEEEEEC-CCCEEEEEeCCC------eEE
Confidence 6677777742 36888888776543221100 01111111222 677777877543 688
Q ss_pred EEECCCCceEEeccCCC----------C-----------CCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEEC--C
Q 008260 276 VFDLQTCSWSTLKTYGK----------P-----------PVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDL--E 331 (572)
Q Consensus 276 ~yd~~~~~W~~~~~~g~----------~-----------p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~--~ 331 (572)
+||..+.+....-..+. . +.......++.. +++.+++++.. .+.+.+||+ .
T Consensus 266 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~-----d~~i~iw~~~~~ 340 (450)
T 2vdu_B 266 AWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA-----TKCIIILEMSEK 340 (450)
T ss_dssp EEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT-----CSEEEEEEECSS
T ss_pred EEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC-----CCeEEEEEeccC
Confidence 99988766433211000 0 111111122222 23444444321 245888887 3
Q ss_pred -CCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCC----CcCcCcEEEEECCCCcEE
Q 008260 332 -TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH----AACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 332 -t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~----~~~~~~v~~yd~~t~~W~ 387 (572)
..++..+... +....-.+.+...+ .+++..+... ....-.+|.++..++.|+
T Consensus 341 ~~~~l~~~~~~---~~~~~v~~~~~~~~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 341 QKGDLALKQII---TFPYNVISLSAHND-EFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp STTCEEEEEEE---ECSSCEEEEEEETT-EEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred CCCceeeccEe---ccCCceEEEEecCC-cEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 3445555433 22222234444444 4776665322 122236788888888885
No 225
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=80.22 E-value=23 Score=34.07 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=59.5
Q ss_pred CEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCc
Q 008260 256 NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (572)
Q Consensus 256 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 334 (572)
+.+++.|+.++ .+.+||..+......... ......-.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 54 g~~l~~~~~dg------~i~iw~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~ 119 (368)
T 3mmy_A 54 GNFLIAGSWAN------DVRCWEVQDSGQTIPKAQ--QMHTGPVLDVCWSDDGSKVFTASCD------KTAKMWDLSSNQ 119 (368)
T ss_dssp SEEEEEEETTS------EEEEEEECTTSCEEEEEE--EECSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTE
T ss_pred ceEEEEECCCC------cEEEEEcCCCCceeEEEe--ccccCCEEEEEECcCCCEEEEEcCC------CcEEEEEcCCCC
Confidence 48888887654 588888876333221110 0011111223332 45666677653 358899999887
Q ss_pred EEEeeCCCCCCCcccceEEEE--EcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 335 WDEIDAVGVPPSPRSDHAAAV--HAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 335 W~~v~~~g~~p~~R~~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
....... ...-.+++. ..++.+++.|+.+ ..+.+||+.+.+
T Consensus 120 ~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 162 (368)
T 3mmy_A 120 AIQIAQH-----DAPVKTIHWIKAPNYSCVMTGSWD-----KTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEEC-----SSCEEEEEEEECSSCEEEEEEETT-----SEEEEECSSCSS
T ss_pred ceeeccc-----cCceEEEEEEeCCCCCEEEEccCC-----CcEEEEECCCCc
Confidence 6655432 112223333 3456678888765 468899987654
No 226
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=80.14 E-value=59 Score=33.71 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=37.9
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
++++|+|-|. ..|.||..+.+.....-.| +| . .-++....+++|+|-|. ..|+||..+
T Consensus 158 ~~~~yfFkG~--------~yw~yd~~~~~~~~~~w~g-i~--~-iDAA~~~~g~~YfFkG~--------~y~rfd~~~ 215 (460)
T 1qhu_A 158 DEGILFFQGN--------RKWFWDLTTGTKKERSWPA-VG--N-CTSALRWLGRYYCFQGN--------QFLRFNPVS 215 (460)
T ss_dssp SSEEEEEETT--------EEEEEETTTTEEEEECCTT-SC--C-CSEEEEETTEEEEEETT--------EEEEECTTT
T ss_pred CCeEEEEecc--------cEEEEecccceeecccCCC-CC--c-cchheeeCCceEEEECC--------EEEEEcCcc
Confidence 6788999874 5899999887655432111 22 2 34555568999999774 366666544
No 227
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=79.97 E-value=36 Score=31.12 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=58.6
Q ss_pred eEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEE--eccC-CCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCc
Q 008260 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWST--LKTY-GKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLND 324 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~--~~~~-g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 324 (572)
+++..++.+|+|=|. .+|+++.....+.. +... ..+|. ... ++... ++++|+|=|. .
T Consensus 28 Ai~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG~--------~ 89 (207)
T 1pex_A 28 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRGR--------K 89 (207)
T ss_dssp EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEETT--------E
T ss_pred EEEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEccC--------E
Confidence 445579999999774 46777654433321 1110 12342 122 33333 5899999763 3
Q ss_pred eEEEECCCCcE---EEeeCCCCCCCcccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 325 LHILDLETMTW---DEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 325 v~~yd~~t~~W---~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
+|+|+-.+..- ..+...|-+..+..--++... .++++|+|-| +..|+||..+++
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~ 147 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHI 147 (207)
T ss_dssp EEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTE
T ss_pred EEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCcc
Confidence 66665322111 223322322222222233333 3478999988 679999987654
No 228
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=79.97 E-value=46 Score=32.36 Aligned_cols=185 Identities=11% Similarity=0.025 Sum_probs=96.3
Q ss_pred ceEEecccCCCCCCCCcceeEEEE-CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcce
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVV-QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGH 249 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~h 249 (572)
..|+.+.. |....-.++... .+.+|++|- . ..+++-.-...+|+.+.... ........
T Consensus 25 ~~W~~~~~----~~~~~~~~v~~~~~~~~~~~G~--~----g~i~~s~DgG~tW~~~~~~~-----------~~~~~~~~ 83 (327)
T 2xbg_A 25 NPWEAIQL----PTTATILDMSFIDRHHGWLVGV--N----ATLMETRDGGQTWEPRTLVL-----------DHSDYRFN 83 (327)
T ss_dssp CCEEEEEC----SCSSCEEEEEESSSSCEEEEET--T----TEEEEESSTTSSCEECCCCC-----------SCCCCEEE
T ss_pred CCceEeec----CCCCcEEEEEECCCCcEEEEcC--C----CeEEEeCCCCCCCeECCCCC-----------CCCCccEE
Confidence 58998763 222222333333 467888653 1 12555433456899875321 00111223
Q ss_pred eEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEE-ECCEEEEEecCCCCCCCCCceEEE
Q 008260 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHIL 328 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~y 328 (572)
++...++.+|+.|-. ..+++-+-.-.+|+.+......|.. ....+. -++.+|+.|.. ..+++-
T Consensus 84 ~i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~-------g~v~~S 147 (327)
T 2xbg_A 84 SVSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPGS--PRLIKALGNGSAEMITNV-------GAIYRT 147 (327)
T ss_dssp EEEEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSSC--EEEEEEEETTEEEEEETT-------CCEEEE
T ss_pred EEEecCCeEEEEECC-------CeEEEECCCCCCceECccccCCCCC--eEEEEEECCCCEEEEeCC-------ccEEEE
Confidence 344456788887532 1344433335789998642112221 223333 36788887742 135544
Q ss_pred ECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECC-CCcEEeeccCCCCCCCccccEEEE
Q 008260 329 DLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQ-TMEWSRPTQQGEIPTPRAGHAGVT 406 (572)
Q Consensus 329 d~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-t~~W~~v~~~g~~p~~R~~~~~~~ 406 (572)
+=.-.+|+.+... .+...++++...++.+|++|-. ..+++-+-. ..+|+.+.. +.+...+.++.
T Consensus 148 ~DgG~tW~~~~~~----~~~~~~~~~~~~~~~~~~~g~~------G~~~~S~d~gG~tW~~~~~----~~~~~~~~~~~ 212 (327)
T 2xbg_A 148 KDSGKNWQALVQE----AIGVMRNLNRSPSGEYVAVSSR------GSFYSTWEPGQTAWEPHNR----TTSRRLHNMGF 212 (327)
T ss_dssp SSTTSSEEEEECS----CCCCEEEEEECTTSCEEEEETT------SSEEEEECTTCSSCEEEEC----CSSSCEEEEEE
T ss_pred cCCCCCCEEeecC----CCcceEEEEEcCCCcEEEEECC------CcEEEEeCCCCCceeECCC----CCCCccceeEE
Confidence 3345689998642 2334455555556667776632 245665433 678998852 33344444444
No 229
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=79.73 E-value=73 Score=34.52 Aligned_cols=110 Identities=10% Similarity=-0.057 Sum_probs=55.8
Q ss_pred eeEEEEECCC-CceEEeccCCCCCCCCcceEE-EEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 272 IQVKVFDLQT-CSWSTLKTYGKPPVSRGGQSV-TLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 272 ~~v~~yd~~~-~~W~~~~~~g~~p~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
..++++|+.+ .+-..+... .........+ .-.+..|++....... ...+++++|+.+.+...+........-..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~pDg~~l~~~~~~~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 338 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLG--KEQDIYLARVNWRDPQHLSFQRQSRDQ--KKLDLVEVTLASNQQRVLAHETSPTWVPL 338 (741)
T ss_dssp EEEEEECSSTTCCCEEECCC--SCSSEEEEEEEEEETTEEEEEEEETTS--SEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred eEEEEEECCCCCceEEecCC--CCcceEEEEEEeCCCCEEEEEEecccC--CeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence 4788899888 765555321 0111111111 2234455554432221 24579999999988766643210000001
Q ss_pred ceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 350 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
....+...++.+++.+..++ ...+|.+|.... ...+
T Consensus 339 ~~~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l 374 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTG---FQHLYRIDSKGK-AAAL 374 (741)
T ss_dssp CSCCEECTTSCEEEEECTTS---SCEEEEECSSSC-EEES
T ss_pred CCceEECCCCeEEEEecCCC---ccEEEEEcCCCC-eeee
Confidence 11233444555666665432 257899987766 5554
No 230
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=79.52 E-value=39 Score=36.77 Aligned_cols=178 Identities=8% Similarity=0.007 Sum_probs=89.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE--eCCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP--WENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~--~~~~iyv~GG~~~~~~~~~ 272 (572)
++++|.+-- ..++....+|+.+.....|+.+....... ........... -+++.+++.-.... ....
T Consensus 79 G~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~l~d~~~~a---------~~~~~~~~~~~~SPDG~~la~~~~~~G-~~~~ 147 (695)
T 2bkl_A 79 NGRFFYVRT-HKDKEKAILYWRQGESGQEKVLLDPNGWS---------KDGTVSLGTWAVSWDGKKVAFAQKPNA-ADEA 147 (695)
T ss_dssp TTEEEEEEE-CTTCSSCEEEEEESTTSCCEEEECGGGSS---------SSSCEEEEEEEECTTSSEEEEEEEETT-CSCC
T ss_pred CCEEEEEEE-cCCCeEEEEEEEcCCCCCcEEEEchHHhc---------cCCCEEEEEEEECCCCCEEEEEECCCC-CceE
Confidence 566665432 22233457888888777888775432000 00001111122 26666555433221 2345
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCC-------CCCCceEEEECCCCcE--EEeeCCC
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKR-------SLLNDLHILDLETMTW--DEIDAVG 342 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~-------~~~~~v~~yd~~t~~W--~~v~~~g 342 (572)
.++++|+.+.+..... ..+.... ...+.. +++.++++..+... .....++++++.+..- ..+...
T Consensus 148 ~i~v~dl~tg~~~~~~---~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~- 222 (695)
T 2bkl_A 148 VLHVIDVDSGEWSKVD---VIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER- 222 (695)
T ss_dssp EEEEEETTTCCBCSSC---CBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-
T ss_pred EEEEEECCCCCCcCCc---ccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-
Confidence 8999999998864111 1222221 223333 55555665554321 1245699999987763 233222
Q ss_pred CCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 343 VPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 343 ~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
...+....+.....++..+++...... ..+++|.+|..+..|..+.
T Consensus 223 -~~~~~~~~~~~~SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~~~~l~ 268 (695)
T 2bkl_A 223 -TGDPTTFLQSDLSRDGKYLFVYILRGW-SENDVYWKRPGEKDFRLLV 268 (695)
T ss_dssp -CCCTTCEEEEEECTTSCCEEEEEEETT-TEEEEEEECTTCSSCEEEE
T ss_pred -CCCCEEEEEEEECCCCCEEEEEEeCCC-CceEEEEEcCCCCceEEee
Confidence 112233344444455444444432221 2357888888777888775
No 231
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=78.36 E-value=56 Score=35.57 Aligned_cols=148 Identities=14% Similarity=0.001 Sum_probs=83.4
Q ss_pred CcEEEEEcCCC--cEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCC---CceE
Q 008260 211 SDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQT---CSWS 285 (572)
Q Consensus 211 ~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~---~~W~ 285 (572)
+++|.+|+.+. .|..+.... ..........++.||+....+. ....++.+|+.+ ..|+
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~--------------~~~~~~~~~~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~ 321 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDL--------------DADVSLVDNKGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWR 321 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSS--------------SSCEEEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCE
T ss_pred cEEEEEECCCCCCceEEEeCCC--------------CceEEEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCccccE
Confidence 68999998765 677765321 1111123345789999876542 245789999876 3488
Q ss_pred EeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEE-EcCCEEEEE
Q 008260 286 TLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAV-HAERYLLIF 364 (572)
Q Consensus 286 ~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~-~~~~~lyv~ 364 (572)
.+.+. ... .. .....++.|++..-.++ ...++++|+++.....+.. |.......... ..++.|++.
T Consensus 322 ~l~~~--~~~--~~-~~s~~g~~lv~~~~~~g----~~~l~~~d~~g~~~~~l~~----p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 322 DLIPE--RQQ--VL-TVHSGSGYLFAEYMVDA----TARVEQFDYEGKRVREVAL----PGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp EEECC--CSS--CE-EEEEETTEEEEEEEETT----EEEEEEECTTSCEEEEECC----SSSSEEEECCCCTTCSCEEEE
T ss_pred EEecC--CCC--EE-EEEEECCEEEEEEEECC----eeEEEEEECCCCeeEEeec----CCCceEEeeecCCCCCEEEEE
Confidence 87532 111 11 55556778776544332 3468999988766555532 22111111111 123334433
Q ss_pred -eCCCCCcCcCcEEEEECCCCcEEeecc
Q 008260 365 -GGGSHAACFNDLHVLDLQTMEWSRPTQ 391 (572)
Q Consensus 365 -GG~~~~~~~~~v~~yd~~t~~W~~v~~ 391 (572)
.+. ..-..++.||+.+.+++.+..
T Consensus 389 ~ss~---~tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 389 FENY---AQPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp EECS---SSCCEEEEECTTTCCEEEEEC
T ss_pred ecCC---CCCCEEEEEECCCCeEEEEEe
Confidence 222 223579999999988887753
No 232
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=78.21 E-value=55 Score=32.24 Aligned_cols=111 Identities=12% Similarity=0.070 Sum_probs=57.3
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCC--CCCC-cceEEEEE-CCEEEEEecCCCCCCCCCceEEEEC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKP--PVSR-GGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDL 330 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~--p~~R-~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~ 330 (572)
++..++.|+.+. .+.+||+.+.+-...-..... .... .-.+++.. ++++++.|+.+ ..+.+||+
T Consensus 260 ~~~~l~s~s~D~------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------g~i~vwd~ 327 (380)
T 3iz6_a 260 DGQRFGTGSDDG------TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN------GDCYVWDT 327 (380)
T ss_dssp TSSEEEEECSSS------CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT------SCEEEEET
T ss_pred CCCeEEEEcCCC------eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC------CCEEEEEC
Confidence 567778887764 488999887654332211000 0001 11223332 56677777653 34889998
Q ss_pred CCCcEEEee-CCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCC
Q 008260 331 ETMTWDEID-AVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT 383 (572)
Q Consensus 331 ~t~~W~~v~-~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t 383 (572)
.+.+-.... ........+ -.+.+...++.+++.|+.+ ..+.++|+..
T Consensus 328 ~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sgs~D-----~~i~iW~~~~ 375 (380)
T 3iz6_a 328 LLAEMVLNLGTLQNSHEGR-ISCLGLSSDGSALCTGSWD-----KNLKIWAFSG 375 (380)
T ss_dssp TTCCEEEEECCSCSSCCCC-CCEEEECSSSSEEEEECTT-----SCEEEEECCS
T ss_pred CCCceEEEEecccCCCCCc-eEEEEECCCCCEEEEeeCC-----CCEEEEecCC
Confidence 766543221 110001111 2234444566688888865 3466666554
No 233
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=76.58 E-value=91 Score=33.88 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=85.2
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCC-EEEEEeccCCC------
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKD------ 267 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~-~iyv~GG~~~~------ 267 (572)
+++.++++-...+....+++++|+.+++....... ..+....+-. ++ .||+. -....
T Consensus 139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--------------~~k~~~~~Ws-Dg~~l~y~-~~~~~~~~~~~ 202 (693)
T 3iuj_A 139 DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--------------DVKFSGISWL-GNEGFFYS-SYDKPDGSELS 202 (693)
T ss_dssp TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--------------EEESCCCEEE-TTTEEEEE-ESSCCC-----
T ss_pred CCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--------------CceeccEEEe-CCCEEEEE-EecCccccccc
Confidence 45555553322233335899999999987654221 1111222223 55 44444 33211
Q ss_pred -CCcceeEEEEECCCCce--EEeccCCCCCC--CCcceEEEEE-CC-EEEEEecCCCCCCCCCceEEEECCCC--cEEEe
Q 008260 268 -PSEIIQVKVFDLQTCSW--STLKTYGKPPV--SRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETM--TWDEI 338 (572)
Q Consensus 268 -~~~~~~v~~yd~~~~~W--~~~~~~g~~p~--~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~v 338 (572)
......|+++++.+.+= ..+.. .+. +.....+... ++ .|++.-.... ..++++++|+++. .|..+
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFG---AIPAQHHRYVGATVTEDDRFLLISAANST---SGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEES---CSGGGCCSEEEEEECTTSCEEEEEEESSS---SCCEEEEEETTSTTCCCEEE
T ss_pred ccCCCcEEEEEECCCCcccceEEEe---cCCCCCeEEEEEEEcCCCCEEEEEEccCC---CCcEEEEEECCCCCCceEEE
Confidence 12345788888876542 22221 111 2222233332 33 4544433221 1368999998766 78877
Q ss_pred eCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC---cEEeec
Q 008260 339 DAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM---EWSRPT 390 (572)
Q Consensus 339 ~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~---~W~~v~ 390 (572)
... . ..........++.||+....+. ....|+.+|+.+. .|+.+.
T Consensus 277 ~~~----~-~~~~~~~~~~g~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~ 324 (693)
T 3iuj_A 277 QGD----L-DADVSLVDNKGSTLYLLTNRDA--PNRRLVTVDAANPGPAHWRDLI 324 (693)
T ss_dssp ECS----S-SSCEEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEE
T ss_pred eCC----C-CceEEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCccccEEEe
Confidence 532 1 1122223345667888875432 2357999998763 488764
No 234
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=76.55 E-value=55 Score=31.38 Aligned_cols=169 Identities=7% Similarity=-0.095 Sum_probs=88.6
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEecc
Q 008260 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGH 264 (572)
Q Consensus 189 ~s~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~ 264 (572)
+++++. +++|||.... ..+++||+.+...+.+..... ..+. ..-..++.. ++.||+.-..
T Consensus 83 ~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~~~~~~~~~---------~~~~-~~p~~i~~d~~~G~l~v~d~~ 146 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY------YHLSVVGSEGGHATQLATSVD---------GVPF-KWLYAVTVDQRTGIVYFTDVS 146 (322)
T ss_dssp EEEEEETTTTEEEEEETT------TEEEEECTTCEECEEEESEET---------TEEC-SCEEEEEECTTTCCEEEEESC
T ss_pred ceEEEcCCCCcEEEEECC------CCEEEEeCCCCEEEEecccCC---------CCcc-cccceEEEecCCCEEEEECCc
Confidence 455555 5789987431 248899988766655543210 0001 111223333 5788886432
Q ss_pred CCC-----------CCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECC
Q 008260 265 TKD-----------PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLE 331 (572)
Q Consensus 265 ~~~-----------~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~ 331 (572)
... ......+++||+.+.+...+... + ..-...++. ++.|||.-.. .+.|++||+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~---~~p~gia~~~dg~~lyv~d~~------~~~I~~~~~~ 215 (322)
T 2fp8_A 147 TLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE--L---HVPGGAEVSADSSFVLVAEFL------SHQIVKYWLE 215 (322)
T ss_dssp SSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE--E---SCCCEEEECTTSSEEEEEEGG------GTEEEEEESS
T ss_pred ccccccccceehcccCCCceEEEEeCCCCEEEEeccC--C---ccCcceEECCCCCEEEEEeCC------CCeEEEEECC
Confidence 100 01235799999988776655321 1 112234443 3468886432 3569999987
Q ss_pred CC---cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCC-----cCcCcEEEEECCCCcEEeec
Q 008260 332 TM---TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHA-----ACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 332 t~---~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~-----~~~~~v~~yd~~t~~W~~v~ 390 (572)
+. ..+.+... +. -..+++-.++.|||.-..... .....+.+||+....-..+.
T Consensus 216 ~~~~~~~~~~~~~---~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~ 276 (322)
T 2fp8_A 216 GPKKGTAEVLVKI---PN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIP 276 (322)
T ss_dssp STTTTCEEEEEEC---SS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEE
T ss_pred CCcCCccceEEeC---CC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEE
Confidence 52 34443322 21 234455555668887532110 01246899998765555554
No 235
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=76.47 E-value=74 Score=32.84 Aligned_cols=159 Identities=11% Similarity=0.024 Sum_probs=82.5
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCC
Q 008260 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDP 268 (572)
Q Consensus 190 s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~ 268 (572)
+++.+.+++|+|-| .-+|+++.....+....... .-+.+|. ....+... .++++|+|=|.
T Consensus 267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~-------~Wp~LP~-~iDAa~~~~~~g~~~fFKg~---- 327 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISV-------FWPQLPN-GLEAAYEFADRDEVRFFKGN---- 327 (450)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGG-------TCTTSCS-SCCEEEEEGGGTEEEEEETT----
T ss_pred eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhH-------hccCCCC-CeeEEEEEcCCCeEEEEeCC----
Confidence 45567899999987 35777776554443221111 0112222 12222222 26899999774
Q ss_pred CcceeEEEEECCCC--ce-EEec-cCCCCCC-CCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEE-----
Q 008260 269 SEIIQVKVFDLQTC--SW-STLK-TYGKPPV-SRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWD----- 336 (572)
Q Consensus 269 ~~~~~v~~yd~~~~--~W-~~~~-~~g~~p~-~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~----- 336 (572)
.+|+|+..+. .+ ..+. ..| .|. +..--++... ++++|+|=| +..|+||..+.+-.
T Consensus 328 ----~~W~~~~~~~~~gyP~~i~~~~g-~P~~~~~IDAA~~~~~~~k~yfFkG--------~~yw~yd~~~~~~~~gYPk 394 (450)
T 1su3_A 328 ----KYWAVQGQNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVA--------NKYWRYDEYKRSMDPGYPK 394 (450)
T ss_dssp ----EEEEEETTEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCSE
T ss_pred ----EEEEecCCcccCCCceeeehhhc-CCCCCCccceEEEEcCCCeEEEEeC--------CEEEEEeCCCccccCCCCc
Confidence 5777764321 01 1111 111 222 1112233333 589999966 35899987654321
Q ss_pred EeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 337 EIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 337 ~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
.+... -+-.+..-.++.. .++++|+|=| +..|+||..+.+-..+
T Consensus 395 ~I~~~-fpgip~~iDAA~~-~~g~~YFFkg-------~~ywr~d~~~~~v~~~ 438 (450)
T 1su3_A 395 MIAHD-FPGIGHKVDAVFM-KDGFFYFFHG-------TRQYKFDPKTKRILTL 438 (450)
T ss_dssp EHHHH-STTSCSCCSEEEE-ETTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred chhhc-CCCCCCCccEEEE-cCCeEEEEeC-------CEEEEEECCcceEecc
Confidence 11100 0112222233333 4667999988 6789999988775543
No 236
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=75.72 E-value=60 Score=33.77 Aligned_cols=107 Identities=11% Similarity=0.138 Sum_probs=56.2
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++++++.|+.+. .+.+||.....-..+.. ....-.+++.. ++++++.|+.+ ..+.++|....
T Consensus 437 d~~~l~~~~~d~------~v~~w~~~~~~~~~~~~-----~~~~v~~~~~spd~~~las~~~d------~~i~iw~~~~~ 499 (577)
T 2ymu_A 437 DDQTIASASDDK------TVKLWNRNGQLLQTLTG-----HSSSVRGVAFSPDGQTIASASDD------KTVKLWNRNGQ 499 (577)
T ss_dssp TSSEEEEEETTS------EEEEEETTSCEEEEEEC-----CSSCEEEEEECTTSCEEEEEETT------SEEEEEETTSC
T ss_pred CCCEEEEEcCCC------EEEEEECCCCEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCC------CEEEEEcCCCC
Confidence 566777776543 57788876554444431 11112233333 56777777653 24778886544
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
.-..+... . ..-.+++...++.+++.|+.+ ..|.+||........
T Consensus 500 ~~~~~~~h----~-~~v~~l~~s~dg~~l~s~~~d-----g~v~lwd~~~~~~~~ 544 (577)
T 2ymu_A 500 LLQTLTGH----S-SSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQT 544 (577)
T ss_dssp EEEEEECC----S-SCEEEEEECTTSSCEEEEETT-----SEEEEECTTSCEEEE
T ss_pred EEEEEeCC----C-CCEEEEEEcCCCCEEEEEECc-----CEEEEEeCCCCEEEE
Confidence 33333321 1 111233444555577777754 357888865444333
No 237
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=75.29 E-value=1.4 Score=43.79 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=47.2
Q ss_pred ccCCCChhhHHHHhhheeeeeeCCCCCC--CCCCCC---h---------------hhhHhHHHhhcC---CCCCHH--HH
Q 008260 36 LTSKFSNDSALLLYALYQQATVGPCNVP--KPSSWS---P---------------VEQSKWKSWQGL---GNMATT--EA 90 (572)
Q Consensus 36 ~~~~~~~~~~l~lY~l~kQat~G~~~~~--~p~~~~---~---------------~~~~k~~aW~~~---~~~~~~--~a 90 (572)
+.-..+.|+.++|=||--||..||.+.. .|+.+. + ....=.++|+++ .||+++ +|
T Consensus 128 G~~~c~~e~a~~LAAl~~q~e~Gd~~~~~~~~~~l~~~~l~~~lP~~~~~~~~~~~~~~I~~~h~~~~~~~g~s~~~a~a 207 (322)
T 4dxa_B 128 GFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHHL 207 (322)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHCSCCHHHHSSSCSCHHHHTTTSCTTTTTTTGGGSHHHHHHHHHHHHC--CCCCCHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCCcccccccccchhhhhhhCCHHHHhcCHHHHHHHHHHHHHhcccccCCChhHHHH
Confidence 4556789999999999999999998632 233322 0 012234688999 999975 46
Q ss_pred HHHHHHHHHHh
Q 008260 91 MRLFVKILEEE 101 (572)
Q Consensus 91 ~~~yi~~~~~~ 101 (572)
+.+|++++.++
T Consensus 208 ~~~yL~~~~~l 218 (322)
T 4dxa_B 208 QRMFLQNCWEI 218 (322)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhcC
Confidence 99999999865
No 238
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=74.42 E-value=85 Score=32.53 Aligned_cols=107 Identities=10% Similarity=0.117 Sum_probs=56.4
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
+++.++.|+.+. .+.+||.....-..+.. . .. .-.+++.. ++++++.++.+ ..+.+||....
T Consensus 396 dg~~l~~~~~d~------~v~~~~~~~~~~~~~~~---~-~~-~v~~~~~s~d~~~l~~~~~d------~~v~~w~~~~~ 458 (577)
T 2ymu_A 396 DGQTIASASDDK------TVKLWNRNGQLLQTLTG---H-SS-SVWGVAFSPDDQTIASASDD------KTVKLWNRNGQ 458 (577)
T ss_dssp TSSCEEEEETTS------EEEEECTTCCEEEEEEC---C-SS-CEEEEEECTTSSEEEEEETT------SEEEEEETTSC
T ss_pred CCCEEEEEeCCC------EEEEEeCCCCEEEEecC---C-CC-CeEEEEECCCCCEEEEEcCC------CEEEEEECCCC
Confidence 566677776543 57788865443333321 1 11 11122222 45666777653 34778887665
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
.-..+... ...-.+++...++.+++.|+.+ ..+.++|.....-..
T Consensus 459 ~~~~~~~~-----~~~v~~~~~spd~~~las~~~d-----~~i~iw~~~~~~~~~ 503 (577)
T 2ymu_A 459 LLQTLTGH-----SSSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQT 503 (577)
T ss_dssp EEEEEECC-----SSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSCEEEE
T ss_pred EEEEEcCC-----CCCEEEEEEcCCCCEEEEEeCC-----CEEEEEcCCCCEEEE
Confidence 54444322 1222344445566678887754 457788865443333
No 239
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=73.42 E-value=41 Score=39.25 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=59.5
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++++++.||.++ .|.+||..+.+-...-. + ....-.+++.. ++++++.|+.+ ..+.++|+.+.
T Consensus 626 ~~~~l~s~~~d~------~i~vw~~~~~~~~~~~~-~---h~~~v~~~~~s~~~~~l~s~~~d------~~v~vwd~~~~ 689 (1249)
T 3sfz_A 626 DGQRIASCGADK------TLQVFKAETGEKLLDIK-A---HEDEVLCCAFSSDDSYIATCSAD------KKVKIWDSATG 689 (1249)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCCEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTC
T ss_pred CCCEEEEEeCCC------eEEEEECCCCCEEEEec-c---CCCCEEEEEEecCCCEEEEEeCC------CeEEEEECCCC
Confidence 667777887654 58899988866433211 0 11111222332 55667777653 35899999887
Q ss_pred cEEEeeCCCCCCCcccceEEEEEc--CCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHA--ERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
+-...-.. .. ..-.+++... +..+++.|+.+ ..+.++|+.+.+...
T Consensus 690 ~~~~~~~~---~~-~~v~~~~~~~~~~~~~l~sg~~d-----~~v~vwd~~~~~~~~ 737 (1249)
T 3sfz_A 690 KLVHTYDE---HS-EQVNCCHFTNKSNHLLLATGSND-----FFLKLWDLNQKECRN 737 (1249)
T ss_dssp CEEEEEEC---CS-SCEEEEEECSSSSCCEEEEEETT-----SCEEEEETTSSSEEE
T ss_pred ceEEEEcC---CC-CcEEEEEEecCCCceEEEEEeCC-----CeEEEEECCCcchhh
Confidence 64333211 11 1112222222 34466666654 458899988876543
No 240
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=73.42 E-value=67 Score=34.52 Aligned_cols=124 Identities=14% Similarity=0.106 Sum_probs=64.5
Q ss_pred EEEeCCEEEEEeccCCCCCcceeEEEEEC-CCC--ceEEeccCCC--CCCCC---cceEEEE--ECCE----EEEEecCC
Q 008260 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDL-QTC--SWSTLKTYGK--PPVSR---GGQSVTL--VGTS----LVIFGGED 316 (572)
Q Consensus 251 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-~~~--~W~~~~~~g~--~p~~R---~~~~~~~--~~~~----iyv~GG~~ 316 (572)
-++.++.||+.... ...++.+|. .+. .|+.-..... .+..+ ...+.++ .+++ ||+...
T Consensus 58 P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-- 129 (599)
T 1w6s_A 58 PLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-- 129 (599)
T ss_dssp CEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT--
T ss_pred cEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC--
Confidence 34569999998653 135899998 665 4877542110 00011 1223444 4666 776422
Q ss_pred CCCCCCCceEEEECCCCc--EEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc--EEee
Q 008260 317 AKRSLLNDLHILDLETMT--WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WSRP 389 (572)
Q Consensus 317 ~~~~~~~~v~~yd~~t~~--W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~v 389 (572)
-..++.+|..|.+ |+.-.... ........+-++. ++.||+-.+......-..|+.||.++.+ |+.-
T Consensus 130 -----dg~l~AlDa~TG~~~W~~~~~~~-~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 130 -----DGNVAALNAETGETVWKVENSDI-KVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp -----TSEEEEEETTTCCEEEEEECCCG-GGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred -----CCEEEEEECCCCCEEEeecCCCC-CccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 2458999987764 87543210 0000111122344 5556553321111123579999998764 8764
No 241
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=73.24 E-value=64 Score=30.59 Aligned_cols=166 Identities=6% Similarity=-0.021 Sum_probs=83.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEE----eccCC----
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSI----AGHTK---- 266 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~----GG~~~---- 266 (572)
+++||+.... ...+.+||+. .+.+.+..... ..+..+....++.-++.||+. |-...
T Consensus 96 dG~l~v~~~~-----~~~v~~~~~~-g~~~~~~~~~~---------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~ 160 (305)
T 3dr2_A 96 QQRLVHCEHG-----RRAITRSDAD-GQAHLLVGRYA---------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGC 160 (305)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEECEET---------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSC
T ss_pred CCCEEEEECC-----CCEEEEECCC-CCEEEEEeccC---------CCccCCCCCEEECCCCCEEEeCcCCCcccccccc
Confidence 4677776320 1368899986 66665543210 000111122222237888885 32210
Q ss_pred ---CCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCC
Q 008260 267 ---DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAV 341 (572)
Q Consensus 267 ---~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~ 341 (572)
.......|++||+.+.+++.+. . .. .-.+.+.. +..||+........ ..+.+++||+...........
T Consensus 161 ~~~~~~~~~~v~~~d~~~g~~~~~~-~--~~---~p~gl~~spdg~~lyv~~~~~~~~-~~~~i~~~~~~~~~l~~~~~~ 233 (305)
T 3dr2_A 161 PADPELAHHSVYRLPPDGSPLQRMA-D--LD---HPNGLAFSPDEQTLYVSQTPEQGH-GSVEITAFAWRDGALHDRRHF 233 (305)
T ss_dssp CCCCSSSCEEEEEECSSSCCCEEEE-E--ES---SEEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEE
T ss_pred ccccccCCCeEEEEcCCCCcEEEEe-c--CC---CCcceEEcCCCCEEEEEecCCcCC-CCCEEEEEEecCCCccCCeEE
Confidence 0112467999999888877764 1 11 11233443 34688765422111 135799999876543221111
Q ss_pred CCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 342 GVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 342 g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
...+ ...-.+.++-.++.||+..+ +.|++||+.......+.
T Consensus 234 ~~~~-~~~pdgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 234 ASVP-DGLPDGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp ECCS-SSCCCSEEECTTSCEEECCS-------SEEEEECTTSCEEEEEE
T ss_pred EECC-CCCCCeEEECCCCCEEEecC-------CcEEEECCCCCEEEEEE
Confidence 0001 11112344545566877542 35999999877666664
No 242
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=73.18 E-value=97 Score=33.03 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=64.8
Q ss_pred EEeCCEEEEEeccCCCCCcceeEEEEECCCC--ceEEeccCCCCCCCCc---ceEEEEECCEEEEEecCCCCCCCCCceE
Q 008260 252 IPWENKLLSIAGHTKDPSEIIQVKVFDLQTC--SWSTLKTYGKPPVSRG---GQSVTLVGTSLVIFGGEDAKRSLLNDLH 326 (572)
Q Consensus 252 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~g~~p~~R~---~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 326 (572)
++.+++||+..... .++.+|..+. .|+.-........+.+ ..+.++.+++||+... -..++
T Consensus 65 ~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~l~ 130 (582)
T 1flg_A 65 IVSDGVIYVTASYS-------RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DASVV 130 (582)
T ss_dssp EEETTEEEEEETTT-------EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTEEE
T ss_pred EEECCEEEEEcCCC-------CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCEEE
Confidence 45799999986631 3899998765 4877542211111111 1334567888887531 24699
Q ss_pred EEECCCC--cEEEeeCCCCCCCcc--cceEEEEEcC----C-EEEEEeCCCC-CcCcCcEEEEECCCC--cEEe
Q 008260 327 ILDLETM--TWDEIDAVGVPPSPR--SDHAAAVHAE----R-YLLIFGGGSH-AACFNDLHVLDLQTM--EWSR 388 (572)
Q Consensus 327 ~yd~~t~--~W~~v~~~g~~p~~R--~~~~~~~~~~----~-~lyv~GG~~~-~~~~~~v~~yd~~t~--~W~~ 388 (572)
.+|..|. .|+.-... +... ...+.++..+ + .|| +|.... ...-..++.||.++. .|+.
T Consensus 131 AlD~~TG~~~W~~~~~~---~~~~~~~~~sP~v~~~~~~G~~~v~-vg~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 131 ALNKNTGKVVWKKKFAD---HGAGYTMTGAPTIVKDGKTGKVLLI-HGSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EEESSSCCEEEEEECSC---GGGTCBCCSCCEEEECTTTCCEEEE-ECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred EEECCCCCEEeeecCCC---CCcCcccccCCEEeCCCcCCcEEEE-EeccccccCCCCEEEEEECCCCCEEeec
Confidence 9998876 48764321 1111 1112233433 1 344 443211 112356999999865 4865
No 243
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=73.09 E-value=85 Score=34.39 Aligned_cols=149 Identities=8% Similarity=0.002 Sum_probs=77.2
Q ss_pred eCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEE--ECCEEEEEecCCCCCCCCCceEEEECC
Q 008260 254 WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL--VGTSLVIFGGEDAKRSLLNDLHILDLE 331 (572)
Q Consensus 254 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~ 331 (572)
.++.||+.-.. ...|+++++....-..+... .+..|+ ..++ .++.||+.--. ....|++++++
T Consensus 463 ~~g~LY~tD~~------~~~I~v~d~dg~~~~~l~~~-~~~~P~---giavDp~~g~ly~td~~-----~~~~I~~~~~d 527 (699)
T 1n7d_A 463 IHSNIYWTDSV------LGTVSVADTKGVKRKTLFRE-QGSKPR---AIVVDPVHGFMYWTDWG-----TPAKIKKGGLN 527 (699)
T ss_dssp SSSBCEECCTT------TSCEEEEBSSSCCEEEECCC-SSCCCC---CEECCSSSSCCEECCCS-----SSCCEEBCCSS
T ss_pred eCCcEEEEecc------CCeEEEEecCCCceEEEEeC-CCCCcc---eEEEccCCCcEEEcccC-----CCCeEEEEeCC
Confidence 46788886322 34688999877655544321 122222 2333 25678875411 12568888876
Q ss_pred CCcEEEeeCCCCCCCcccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeecc-CCCCCCCccccEEEEECC
Q 008260 332 TMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQ-QGEIPTPRAGHAGVTIGE 409 (572)
Q Consensus 332 t~~W~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~-~g~~p~~R~~~~~~~~~~ 409 (572)
...-+.+... ....| .++++- .++.||+.-.. .+.|+++|+....-+.+.. .+.++. ..++++.++
T Consensus 528 G~~~~~l~~~-~l~~P---nGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~~~~---P~glavd~~ 595 (699)
T 1n7d_A 528 GVDIYSLVTE-NIQWP---NGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAH---PFSLAVFED 595 (699)
T ss_dssp SCCCCEESCS-SCSSC---CCEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCCSSSCSS---CCCCEEETT
T ss_pred CCCeeEEEeC-CCCCc---cEEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEecCCcCCC---ceEeEEECC
Confidence 5443333211 01111 233443 34568887543 2579999987543333321 111222 234455444
Q ss_pred ccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 410 NWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 410 ~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
.||+.-.. .+.|.++|+.+.
T Consensus 596 -----------------~lywtd~~----~~~V~~~d~~~G 615 (699)
T 1n7d_A 596 -----------------KVFWTDII----NEAIFSANRLTG 615 (699)
T ss_dssp -----------------EEEEECST----TTCEEEEETTTE
T ss_pred -----------------EEEEEeCC----CCeEEEEEccCC
Confidence 68876532 356889987654
No 244
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=72.97 E-value=87 Score=33.75 Aligned_cols=111 Identities=7% Similarity=-0.128 Sum_probs=54.5
Q ss_pred cEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCC---CCcceeEEEEECCCCceEEec
Q 008260 212 DMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD---PSEIIQVKVFDLQTCSWSTLK 288 (572)
Q Consensus 212 ~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~ 288 (572)
.++++|+.+.+-..+.... .............-+++.++++..... ......++++|+.+.+-..+.
T Consensus 38 ~i~~~d~~~g~~~~~~~~~----------~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 107 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGK----------KIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD 107 (723)
T ss_dssp CEEEBCGGGCCCEEEECTT----------TTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC
T ss_pred CEEEEECCCCcEEEEeccc----------cccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEecc
Confidence 6888898887654443211 000001111112226666666654322 122468999999988765554
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeC
Q 008260 289 TYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDA 340 (572)
Q Consensus 289 ~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~ 340 (572)
... ....+....+..-+++.++++.. ++++++|+.+..-..+..
T Consensus 108 ~~~-~~~~~~~~~~~SPdG~~la~~~~-------~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 108 PPE-VSNAKLQYAGWGPKGQQLIFIFE-------NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp CTT-CCSCCCSBCCBCSSTTCEEEEET-------TEEEEESSSSSCCEEEEC
T ss_pred CCc-cccccccccEECCCCCEEEEEEC-------CeEEEEECCCCceEEEec
Confidence 221 11111111111113444444432 368888888777666643
No 245
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=72.79 E-value=85 Score=31.83 Aligned_cols=190 Identities=16% Similarity=0.197 Sum_probs=104.1
Q ss_pred CCCCCCcceeEEEeCCEEEEEeccCCCCCc-ceeEEEEE-----CCCCceEEeccCCCCCCCCcceEEEEECCEEEEEec
Q 008260 241 ALLTPCAGHSLIPWENKLLSIAGHTKDPSE-IIQVKVFD-----LQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGG 314 (572)
Q Consensus 241 ~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~-~~~v~~yd-----~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG 314 (572)
..|..-.-|+.|.+++.=|++|=+.++-.. .-.+..|. +..-.=++++. ..-..-.-.|.-.+++.||+.--
T Consensus 279 ~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsEPCvkyYdgvLyLtTR 356 (670)
T 3ju4_A 279 LIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPS--EYEPDASEPCIKYYDGVLYLITR 356 (670)
T ss_dssp SCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCG--GGCTTEEEEEEEEETTEEEEEEE
T ss_pred cccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechh--hhccccccchhhhhCCEEEEEec
Confidence 345556789999999988899987766222 11222221 11111222321 11122233344556999999853
Q ss_pred CCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCC----------CCCcCc---CcEE--EE
Q 008260 315 EDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGG----------SHAACF---NDLH--VL 379 (572)
Q Consensus 315 ~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~----------~~~~~~---~~v~--~y 379 (572)
-......-..+.+-+.....|+.+.... ..-....-.+.++| .||+||-. ..+.+. ...+ +.
T Consensus 357 gt~~~~~GS~L~rs~d~Gq~w~slrfp~--nvHhtnlPFakvgD-~l~mFgsERA~nEWE~G~pD~RY~a~yPRtF~~r~ 433 (670)
T 3ju4_A 357 GTRGDRLGSSLHRSRDIGQTWESLRFPH--NVHHTTLPFAKVGD-DLIMFGSERAENEWEAGAPDDRYKASYPRTFYARL 433 (670)
T ss_dssp ESCTTSCCCEEEEESSTTSSCEEEECTT--CCCSSCCCEEEETT-EEEEEEECSSTTCSSTTCCCCCSSCBCCEEEEEEE
T ss_pred CcCCCCCcceeeeecccCCchhheeccc--cccccCCCcceeCC-EEEEEeccccccccccCCCcccccccCCceEEEEe
Confidence 3332234566888888888999986431 11112222344544 69999852 111111 1222 23
Q ss_pred E-----CCCCcEEeecc---CCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCC---------------
Q 008260 380 D-----LQTMEWSRPTQ---QGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNG--------------- 436 (572)
Q Consensus 380 d-----~~t~~W~~v~~---~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~--------------- 436 (572)
+ .+.-+|..+.. +|.....-.+-+++++.++| .-|+|||.+-
T Consensus 434 nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~---------------lyyiFGgEd~~np~s~gdN~~k~~~ 498 (670)
T 3ju4_A 434 NVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNY---------------IYYMFGGEDHFNPWTYGDNSAKDPF 498 (670)
T ss_dssp ETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTE---------------EEEEEEEBCSCCCCTTTTTTTCCTT
T ss_pred ecccCCccceEEEEeecceeccccccccccceeEEEeCCE---------------EEEEecCcccCCccccccccccCcc
Confidence 3 23456777643 25555556666677776632 5789999641
Q ss_pred ---CccCcEEEEeCCCC
Q 008260 437 ---RYNNEVHVLKPSHK 450 (572)
Q Consensus 437 ---~~~~dv~~yd~~~~ 450 (572)
..-.|+|+|.+.-.
T Consensus 499 ~~~Ghp~dlY~~ri~i~ 515 (670)
T 3ju4_A 499 KSDGHPSDLYCYKMKIG 515 (670)
T ss_dssp STTCCCCEEEEEEEECS
T ss_pred ccCCCCcceEEEEEEec
Confidence 13568999985544
No 246
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=71.81 E-value=85 Score=31.37 Aligned_cols=159 Identities=11% Similarity=0.074 Sum_probs=84.1
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCCcE--EEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCC
Q 008260 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAW--SKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTK 266 (572)
Q Consensus 190 s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W--~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~ 266 (572)
+++.+++++|+|=| +.+|+++.....- ..+... -+.+| .....+... .++++|+|-|.
T Consensus 185 Av~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~---------wpgLP-~~iDAa~~~~~~g~~~fFkg~-- 245 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSL---------WPTLP-SGIEAAYEIEARNQVFLFKDD-- 245 (365)
T ss_dssp CEEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHH---------CSSCC-SSCCEEEEEGGGTEEEEEETT--
T ss_pred eEEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhh---------ccCCC-CCccEEEEecCCCEEEEEeCC--
Confidence 44567899999977 3567776543221 111111 11222 223322222 27899999774
Q ss_pred CCCcceeEEEEECCCCc--e-EEeccCCCCCCC-CcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeC
Q 008260 267 DPSEIIQVKVFDLQTCS--W-STLKTYGKPPVS-RGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDA 340 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~--W-~~~~~~g~~p~~-R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~ 340 (572)
.+|+|+..... + ..+...| +|.. ..--++... ++++|+|=| +..|+||..+.+-..--+
T Consensus 246 ------~yWr~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~~~~yfFkG--------~~yw~yd~~~~~v~~gyP 310 (365)
T 3ba0_A 246 ------KYWLISNLRPEPNYPKSIHSFG-FPNFVKKIDAAVFNPRFYRTYFFVD--------NQYWRYDERRQMMDPGYP 310 (365)
T ss_dssp ------EEEECSTTSCTTTCSEETTTTT-CCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCC
T ss_pred ------EEEEEcCCcccCCCCceeeecc-CCCCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEeCCcceecCCCC
Confidence 56777654211 1 1232222 3321 122234434 579999966 358999976653211000
Q ss_pred C----CCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 341 V----GVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 341 ~----g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
. +-+..+..-.++....++++|.|=| +..|+||..+.+-..+
T Consensus 311 k~I~~~f~g~p~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~~ 356 (365)
T 3ba0_A 311 KLITKNFQGIGPKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITKT 356 (365)
T ss_dssp CCHHHHSTTCCSSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred cchhhcCCCCCCccceeeEecCCcEEEEeC-------CEEEEEECCccEEecc
Confidence 0 0012233344555554667999987 6799999988776553
No 247
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=71.40 E-value=67 Score=30.05 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=54.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCC--CcEEEeeecccccCCCCCCCCCCCCCcceeEEEe----CCEEEEEeccCCCC
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRS--WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW----ENKLLSIAGHTKDP 268 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~----~~~iyv~GG~~~~~ 268 (572)
++++++.|+.+ ..+.+||+.+ ..+..+.... .....-..+.+ ++.+++.|+.+.
T Consensus 22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~d~~~l~s~~~dg-- 81 (351)
T 3f3f_A 22 YGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSWR-------------AHDSSIVAIDWASPEYGRIIASASYDK-- 81 (351)
T ss_dssp SSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEEE-------------CCSSCEEEEEECCGGGCSEEEEEETTS--
T ss_pred CCCEEEEeeCC-----CeEEEEECCCCCCcceecceec-------------cCCCcEEEEEEcCCCCCCEEEEEcCCC--
Confidence 45566666632 2577777764 4455544332 11112222222 367788888754
Q ss_pred CcceeEEEEECCCC-------ceEEeccCCCCCCCCcceEEEEE-C--CEEEEEecCCCCCCCCCceEEEECCCCc
Q 008260 269 SEIIQVKVFDLQTC-------SWSTLKTYGKPPVSRGGQSVTLV-G--TSLVIFGGEDAKRSLLNDLHILDLETMT 334 (572)
Q Consensus 269 ~~~~~v~~yd~~~~-------~W~~~~~~g~~p~~R~~~~~~~~-~--~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 334 (572)
.+.+||+.+. .|..+.... .....-.+++.. . +.+++.|+.+ ..+.+||+.+.+
T Consensus 82 ----~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~ 145 (351)
T 3f3f_A 82 ----TVKLWEEDPDQEECSGRRWNKLCTLN--DSKGSLYSVKFAPAHLGLKLACLGND------GILRLYDALEPS 145 (351)
T ss_dssp ----CEEEEEECTTSCTTSSCSEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT------CEEEEEECSSTT
T ss_pred ----eEEEEecCCCcccccccCcceeeeec--ccCCceeEEEEcCCCCCcEEEEecCC------CcEEEecCCChH
Confidence 4778887654 334443211 111112223333 2 5677777753 348888876543
No 248
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=71.36 E-value=67 Score=29.97 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=68.6
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcceeEEEEECCCCceEEec
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK 288 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 288 (572)
+.+.++|+.+.+-...-... .....-.++.+ +++.++.|+.+. .|.++|..+.+-....
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~-------------~~~~~V~~v~~~~~~~~l~sgs~Dg------~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQME-------------QPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNM 105 (318)
T ss_dssp TEEEEEETTTCCEEEEEECC-------------STTCCEEEEEECTTSSEEEEEETTS------EEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEec-------------CCCCeEEEEEECCCCCEEEEEECCC------cEEEeecCCceeEEEe
Confidence 36888999888765543321 11111122222 667778888754 5888998887643332
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCC
Q 008260 289 TYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS 368 (572)
Q Consensus 289 ~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~ 368 (572)
. .... ...+....+.+++.|+.+ ..+..++..+......... .............++.+++.|+.+
T Consensus 106 ~---~h~~--~~~~~~~~~~~l~s~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~d 171 (318)
T 4ggc_A 106 T---SHSA--RVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLS---GHSQEVCGLRWAPDGRHLASGGND 171 (318)
T ss_dssp E---CCSS--CEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEE---CCSSCEEEEEECTTSSEEEEEETT
T ss_pred c---Cccc--eEEEeecCCCEEEEEecC------CceEeeecCCCceeEEEEc---CccCceEEEEEcCCCCEEEEEecC
Confidence 1 1111 122333345566666543 2345555544433222111 111222233333444467777654
Q ss_pred CCcCcCcEEEEECCCC
Q 008260 369 HAACFNDLHVLDLQTM 384 (572)
Q Consensus 369 ~~~~~~~v~~yd~~t~ 384 (572)
..+.++|..+.
T Consensus 172 -----~~i~iwd~~~~ 182 (318)
T 4ggc_A 172 -----NLVNVWPSAPG 182 (318)
T ss_dssp -----SCEEEEESSCB
T ss_pred -----cceeEEECCCC
Confidence 45788888764
No 249
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=71.29 E-value=1e+02 Score=32.20 Aligned_cols=115 Identities=13% Similarity=0.059 Sum_probs=58.5
Q ss_pred CEEEEEeccCCCCCcceeEEEEEC--CCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 256 NKLLSIAGHTKDPSEIIQVKVFDL--QTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 256 ~~iyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
+++.+.+..... .....++..++ ....- .+.. .+..+ ..+....++.+++..+.. +.+.+||+++.
T Consensus 75 d~~l~~~~~~~g-~~~~~l~~~~~~~~g~~~-~l~~---~~~~~-~~~~s~dg~~~~~~s~~~------~~~~l~d~~~g 142 (582)
T 3o4h_A 75 GRVILVRDVSKG-AEQHALFKVNTSRPGEEQ-RLEA---VKPMR-ILSGVDTGEAVVFTGATE------DRVALYALDGG 142 (582)
T ss_dssp SEEEEEEECSTT-SCCEEEEEEETTSTTCCE-ECTT---SCSBE-EEEEEECSSCEEEEEECS------SCEEEEEEETT
T ss_pred CeEEEEeccCCC-CcceEEEEEeccCCCccc-cccC---CCCce-eeeeCCCCCeEEEEecCC------CCceEEEccCC
Confidence 355554443111 23346777877 43332 3321 11111 222233355566655432 23447788888
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
+-..+... +. .+.+...+++.+++++.+... ...++++|+.+.+++.+.
T Consensus 143 ~~~~l~~~---~~----~~~~~spDG~~la~~~~~~~~-~~~i~~~d~~~g~~~~l~ 191 (582)
T 3o4h_A 143 GLRELARL---PG----FGFVSDIRGDLIAGLGFFGGG-RVSLFTSNLSSGGLRVFD 191 (582)
T ss_dssp EEEEEEEE---SS----CEEEEEEETTEEEEEEEEETT-EEEEEEEETTTCCCEEEC
T ss_pred cEEEeecC---CC----ceEEECCCCCEEEEEEEcCCC-CeEEEEEcCCCCCceEee
Confidence 77776543 22 333333344455555433211 145999999998888764
No 250
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=71.23 E-value=1.2e+02 Score=32.97 Aligned_cols=123 Identities=15% Similarity=0.099 Sum_probs=66.8
Q ss_pred EEeCCEEEEEeccCCCCCcceeEEEEECCCCc--eEEeccCCCC--CCC---CcceEEEEECCEEEEEecCCCCCCCCCc
Q 008260 252 IPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTYGKP--PVS---RGGQSVTLVGTSLVIFGGEDAKRSLLND 324 (572)
Q Consensus 252 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~g~~--p~~---R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 324 (572)
++.++.||+.... ..++.+|..+.+ |+.-...... +.. ....+.++.+++||+... -..
T Consensus 67 ~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~ 132 (689)
T 1yiq_A 67 IVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGR 132 (689)
T ss_dssp EEETTEEEEECGG-------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSE
T ss_pred EEECCEEEEEcCC-------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCE
Confidence 4579999997642 368999987654 8764321100 000 112234567888887532 245
Q ss_pred eEEEECCCC--cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc--EEee
Q 008260 325 LHILDLETM--TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WSRP 389 (572)
Q Consensus 325 v~~yd~~t~--~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~v 389 (572)
++.+|..|. .|+.-.............+.++. ++.+|+-.+......-..++.||.++.+ |+.-
T Consensus 133 l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 133 LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 899998876 48765431100111122223344 5556653222111233579999998765 8754
No 251
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=70.51 E-value=66 Score=29.57 Aligned_cols=154 Identities=15% Similarity=0.138 Sum_probs=78.5
Q ss_pred eEEEeCCEEEEEeccCCCCCcceeEEEEECCCCc-e--EEeccC-CCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCC
Q 008260 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS-W--STLKTY-GKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLN 323 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W--~~~~~~-g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~ 323 (572)
++...++++|+|=|. .+|+++..... . ..+... ..+|. ... ++... ++++|+|=| +
T Consensus 35 Ai~~~~g~~~fFkg~--------~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~ID-AA~~~~~~~k~yfFkG--------~ 96 (218)
T 1gen_A 35 GIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPE-KID-AVYEAPQEEKAVFFAG--------N 96 (218)
T ss_dssp EEEEETTEEEEEETT--------EEEEESSTTSCCEEEEEGGGTCTTSCS-CCS-EEEEETTTTEEEEEET--------T
T ss_pred EEEeCCCcEEEEECC--------EEEEEeCCCCccCCCEEHHHhcCCCCC-Ccc-EEEEECCCCEEEEEeC--------C
Confidence 455579999999775 46666544321 1 112211 12332 222 33333 689999966 3
Q ss_pred ceEEEECCCCc---EEEeeCCCCCCCcccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe-----eccCCC
Q 008260 324 DLHILDLETMT---WDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTMEWSR-----PTQQGE 394 (572)
Q Consensus 324 ~v~~yd~~t~~---W~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-----v~~~g~ 394 (572)
..|+||-.+.. =..+...|-+.....-.++... .++++|+|=| +..|+||..+++-.. +.. .-
T Consensus 97 ~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~-~w 168 (218)
T 1gen_A 97 EYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIAD-AW 168 (218)
T ss_dssp EEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHH-HS
T ss_pred EEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhh-cc
Confidence 47888842110 0112222222222223344443 4678999988 679999987764321 110 00
Q ss_pred CCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 395 IPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 395 ~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
+-.+..-.++....+ .+.+|.|-| +..|.||..+.
T Consensus 169 ~g~p~~idaAf~~~~---------------~g~~YfFkg------~~y~~~~~~~~ 203 (218)
T 1gen_A 169 NAIPDNLDAVVDLQG---------------GGHSYFFKG------AYYLKLENQSL 203 (218)
T ss_dssp SSCCSSCSEEEECTT---------------TCEEEEEET------TEEEEEETTEE
T ss_pred CCCCCCCCEEEEEcC---------------CCcEEEEEC------CEEEEEECCce
Confidence 011222234444331 238999977 56888887554
No 252
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=69.80 E-value=78 Score=30.10 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=73.9
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCccee
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~ 273 (572)
+.+++.|+.+ ..+.+||+.+.......... .....-..+.+ ++..++.|+.+. .
T Consensus 54 g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~l~s~~~dg------~ 109 (368)
T 3mmy_A 54 GNFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQ-------------MHTGPVLDVCWSDDGSKVFTASCDK------T 109 (368)
T ss_dssp SEEEEEEETT-----SEEEEEEECTTSCEEEEEEE-------------ECSSCEEEEEECTTSSEEEEEETTS------E
T ss_pred ceEEEEECCC-----CcEEEEEcCCCCceeEEEec-------------cccCCEEEEEECcCCCEEEEEcCCC------c
Confidence 3777787732 35888888874333222211 01111122222 566677777643 6
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEE--E-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccc
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL--V-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~--~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~ 350 (572)
+.+||..+.+...+.. ....-.++.. . ++.+++.|+.+ ..+.+||+.+.+-...-.. ....
T Consensus 110 v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~-----~~~~ 173 (368)
T 3mmy_A 110 AKMWDLSSNQAIQIAQ-----HDAPVKTIHWIKAPNYSCVMTGSWD------KTLKFWDTRSSNPMMVLQL-----PERC 173 (368)
T ss_dssp EEEEETTTTEEEEEEE-----CSSCEEEEEEEECSSCEEEEEEETT------SEEEEECSSCSSCSEEEEC-----SSCE
T ss_pred EEEEEcCCCCceeecc-----ccCceEEEEEEeCCCCCEEEEccCC------CcEEEEECCCCcEEEEEec-----CCCc
Confidence 8899999887665532 1111223333 2 56777888764 3488898876642222111 1122
Q ss_pred eEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 351 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
.+.... ...+++.++ + ..+..||.....
T Consensus 174 ~~~~~~-~~~~~~~~~-~-----~~i~~~~~~~~~ 201 (368)
T 3mmy_A 174 YCADVI-YPMAVVATA-E-----RGLIVYQLENQP 201 (368)
T ss_dssp EEEEEE-TTEEEEEEG-G-----GCEEEEECSSSC
T ss_pred eEEEec-CCeeEEEeC-C-----CcEEEEEecccc
Confidence 233333 443444333 2 457788876553
No 253
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=69.71 E-value=92 Score=30.92 Aligned_cols=187 Identities=12% Similarity=0.095 Sum_probs=97.3
Q ss_pred ceEEecccCCCCCCCCcceeEEEE---CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCC--
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVV---QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTP-- 245 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~-- 245 (572)
..|+...+ .+....-+++++. ++.||+.+.. + ..-..+++.+-...+|+.+..... .+..+..
T Consensus 43 ~~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~-g-~~g~gl~~s~D~G~tW~~~~~~~~-------~~~~~~~~~ 110 (394)
T 3b7f_A 43 RTWELRGP---VFLGHTIHHIVQDPREPERMLMAART-G-HLGPTVFRSDDGGGNWTEATRPPA-------FNKAPEGET 110 (394)
T ss_dssp CSEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCC-------CCCCC----
T ss_pred CCceECCc---cCCCCceEEEEECCCCCCeEEEEecC-C-CCCccEEEeCCCCCCceECCcccc-------CCCcccccc
Confidence 37987532 1122233455554 4678876542 1 111257787777789998763210 0000000
Q ss_pred --Ccce--eEEEe----CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCC--------------CCcceEEE
Q 008260 246 --CAGH--SLIPW----ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPV--------------SRGGQSVT 303 (572)
Q Consensus 246 --R~~h--s~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~--------------~R~~~~~~ 303 (572)
...+ +++.. .+.||+.+- . ..+++.+-...+|+.+......|. ....++++
T Consensus 111 ~~~~~~i~~l~~~~~~~~~~l~~g~~-~------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~ 183 (394)
T 3b7f_A 111 GRVVDHVFWLTPGHASEPGTWYAGTS-P------QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSIL 183 (394)
T ss_dssp CCCCCEEEEEEECCTTSTTCEEEEEE-T------TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEE
T ss_pred cccccceeEEEeCCCCCCCEEEEEec-C------CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEE
Confidence 1111 23332 467776542 1 247788777889999853111121 11223344
Q ss_pred EE---CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCC---CCCC-----cccceEEEEEcC--CEEEEEeCCCCC
Q 008260 304 LV---GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVG---VPPS-----PRSDHAAAVHAE--RYLLIFGGGSHA 370 (572)
Q Consensus 304 ~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g---~~p~-----~R~~~~~~~~~~--~~lyv~GG~~~~ 370 (572)
+. .+.||+.... ..+++.+-...+|+.+.... ..|. ....++.++... +.||+..+
T Consensus 184 ~d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~---- 252 (394)
T 3b7f_A 184 VDPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH---- 252 (394)
T ss_dssp ECTTCTTCEEEEEET-------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET----
T ss_pred ECCCCCCEEEEEECC-------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC----
Confidence 33 2567775432 23777777788999885320 0111 122345554432 56776432
Q ss_pred cCcCcEEEEECCCCcEEeec
Q 008260 371 ACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 371 ~~~~~v~~yd~~t~~W~~v~ 390 (572)
..|++.+-...+|+.+.
T Consensus 253 ---~gl~~s~D~G~tW~~~~ 269 (394)
T 3b7f_A 253 ---CGIYRMDRREGVWKRIG 269 (394)
T ss_dssp ---TEEEEEETTTTEEECGG
T ss_pred ---CeEEEeCCCCCcceECC
Confidence 45899998899999985
No 254
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=69.60 E-value=97 Score=31.16 Aligned_cols=153 Identities=8% Similarity=0.013 Sum_probs=84.2
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeE
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v 274 (572)
+++||+.... -+.+.++|+.++.-..+.... ..++ .+....++.||+...... ..+
T Consensus 141 ~g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~~------------~~~~--ia~~~~g~~l~~~d~~~~-----~~I 196 (409)
T 3hrp_A 141 NNTVLAYQRD-----DPRVRLISVDDNKVTTVHPGF------------KGGK--PAVTKDKQRVYSIGWEGT-----HTV 196 (409)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEEETC------------CBCB--CEECTTSSEEEEEBSSTT-----CEE
T ss_pred CCCEEEEecC-----CCcEEEEECCCCEEEEeeccC------------CCCc--eeEecCCCcEEEEecCCC-----ceE
Confidence 5789998651 246999999988776664321 1121 121112456776644321 178
Q ss_pred EEEECCCCc-eEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccc-
Q 008260 275 KVFDLQTCS-WSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD- 350 (572)
Q Consensus 275 ~~yd~~~~~-W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~- 350 (572)
+.+|+.... ...+... ..+....-+++++. ++.||+... .+.+++||+++.....+...+........
T Consensus 197 ~~~d~~~~~~~~~~g~~-~~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P 268 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQL-GSTFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNP 268 (409)
T ss_dssp EEEEGGGTTCEEEEEEC-CTTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSS
T ss_pred EEEEcCCCceeEEeeec-cchhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCc
Confidence 999986543 2233111 01012223344444 578998321 24699999998876655322111111222
Q ss_pred -eEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 351 -HAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 351 -~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
+..++.. ++.||+..... +.|++||+...
T Consensus 269 ~~~ia~~p~~g~lyv~d~~~-----~~I~~~~~~g~ 299 (409)
T 3hrp_A 269 GPYLIYYFVDSNFYMSDQNL-----SSVYKITPDGE 299 (409)
T ss_dssp CCEEEEETTTTEEEEEETTT-----TEEEEECTTCC
T ss_pred cccEEEeCCCCEEEEEeCCC-----CEEEEEecCCC
Confidence 1555555 57899976432 57999998765
No 255
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=68.14 E-value=69 Score=28.85 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=82.3
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCC--cEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccC
Q 008260 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHT 265 (572)
Q Consensus 190 s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~ 265 (572)
+++.+++++|+|=| +.+|+++.... ......... .-+.+|. ... ++... ++++|+|-|.
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~-------~w~glP~-~ID-Aa~~~~~~~~~yfFkG~- 73 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIAD-------KWPALPR-KLD-SVFEEPLSKKLFFFSGR- 73 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHH-------HCTTSCS-SCS-EEEECTTTCCEEEEETT-
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhh-------ccCCCCC-Ccc-EEEEECCCCeEEEEeCC-
Confidence 45567999999977 46888876552 222211110 0111222 222 22222 6889999874
Q ss_pred CCCCcceeEEEEECCCCce-EEeccCCCCCCC--CcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEE-----E
Q 008260 266 KDPSEIIQVKVFDLQTCSW-STLKTYGKPPVS--RGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWD-----E 337 (572)
Q Consensus 266 ~~~~~~~~v~~yd~~~~~W-~~~~~~g~~p~~--R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-----~ 337 (572)
.+|+|+..+..- ..+...| +|.. ....+....++++|+|=| +..|+||..+.+=. .
T Consensus 74 -------~yw~~~~~~~~~Pk~i~~~G-~p~~~~~iDAA~~~~~g~~yfFkg--------~~ywr~d~~~~~~~~gyPr~ 137 (195)
T 1itv_A 74 -------QVWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSG--------RRLWRFDVKAQMVDPRSASE 137 (195)
T ss_dssp -------EEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEET--------TEEEEEETTTTEECGGGCEE
T ss_pred -------EEEEEcCCccCCCEEeeecc-cCCCccceeEEEEcCCCeEEEEeC--------CEEEEEeCCcccccCCCccC
Confidence 577887543211 1122222 2321 223222223679999966 35899998765311 1
Q ss_pred ee-CCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 338 ID-AVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 338 v~-~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
+. .-. -.|..-.++.... +.+|.|-| +..|+||..+.+-.
T Consensus 138 i~~~w~--Gvp~~idaa~~~~-g~~Yffkg-------~~y~~~~~~~~~v~ 178 (195)
T 1itv_A 138 VDRMFP--GVPLDTHDVFQFR-EKAYFCQD-------RFYWRVSSRSELNQ 178 (195)
T ss_dssp HHHHST--TSCSSCSEEEEET-TEEEEEET-------TEEEEEECCTTCCE
T ss_pred hhhcCC--CCCCCCCEEEEeC-CeEEEEeC-------CEEEEEECCccEEe
Confidence 11 110 1122334555554 67999988 67899998776533
No 256
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=68.02 E-value=79 Score=29.53 Aligned_cols=152 Identities=8% Similarity=0.090 Sum_probs=72.6
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCC-------cEEEeeecccccCCCCCCCCCCCCCcceeEEEe-C--CEEEEEeccC
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSW-------AWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-E--NKLLSIAGHT 265 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~-------~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~--~~iyv~GG~~ 265 (572)
+.+++.|+.+ ..+.+||+.+. .|..+.... .....-.+++.. + +.+++.|+.+
T Consensus 71 ~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 71 GRIIASASYD-----KTVKLWEEDPDQEECSGRRWNKLCTLN------------DSKGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp CSEEEEEETT-----SCEEEEEECTTSCTTSSCSEEEEEEEC------------CCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CCEEEEEcCC-----CeEEEEecCCCcccccccCcceeeeec------------ccCCceeEEEEcCCCCCcEEEEecCC
Confidence 5677777742 35778887664 345554432 111111222222 3 6677777765
Q ss_pred CCCCcceeEEEEECCCCc----eEEec---cCCCCCCCC--cceEEEEE----CCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 266 KDPSEIIQVKVFDLQTCS----WSTLK---TYGKPPVSR--GGQSVTLV----GTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 266 ~~~~~~~~v~~yd~~~~~----W~~~~---~~g~~p~~R--~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
. .+.+||+.+.+ |.... .....+... ...++... .+.+++.|+.++ .+..++...
T Consensus 134 g------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------~~~~~~~~~ 201 (351)
T 3f3f_A 134 G------ILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ------AIIYQRGKD 201 (351)
T ss_dssp C------EEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE------EEEEEECTT
T ss_pred C------cEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC------cEEEEccCC
Confidence 3 58888876643 32111 000011111 11122222 256777776532 244455556
Q ss_pred CcEEEeeCCCCCCCcccceEEEEEcCC----EEEEEeCCCCCcCcCcEEEEECCC
Q 008260 333 MTWDEIDAVGVPPSPRSDHAAAVHAER----YLLIFGGGSHAACFNDLHVLDLQT 383 (572)
Q Consensus 333 ~~W~~v~~~g~~p~~R~~~~~~~~~~~----~lyv~GG~~~~~~~~~v~~yd~~t 383 (572)
.....+.... .....-.+++...++ .+++.|+.+ ..+.+||+.+
T Consensus 202 ~~~~~~~~~~--~h~~~i~~~~~~p~~~~~~~~l~s~~~d-----g~i~iwd~~~ 249 (351)
T 3f3f_A 202 GKLHVAAKLP--GHKSLIRSISWAPSIGRWYQLIATGCKD-----GRIRIFKITE 249 (351)
T ss_dssp SCEEEEEECC--CCCSCEEEEEECCCSSCSSEEEEEEETT-----SCEEEEEEEE
T ss_pred CceeeeeecC--CCCcceeEEEECCCCCCcceEEEEEcCC-----CeEEEEeCCC
Confidence 6655444331 111122334444444 688888865 3466666554
No 257
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=67.75 E-value=2.3 Score=43.20 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=48.9
Q ss_pred CCCChhhHHHHhhheeeeeeCCCCCCCC----C---------CCC-----h--------hhhHhHHHhhcCCCCCHHHHH
Q 008260 38 SKFSNDSALLLYALYQQATVGPCNVPKP----S---------SWS-----P--------VEQSKWKSWQGLGNMATTEAM 91 (572)
Q Consensus 38 ~~~~~~~~l~lY~l~kQat~G~~~~~~p----~---------~~~-----~--------~~~~k~~aW~~~~~~~~~~a~ 91 (572)
...+.|+.++|-||--|+..||++...+ . .-. + ..+.=.+.|+++.||+.+|||
T Consensus 131 ~~~~~e~al~LAaL~~q~~~gD~~~~~~~~k~~~~~l~k~~~l~~flP~~~~~~~~~~~~~k~I~~~~k~~~g~s~~eAk 210 (375)
T 2al6_A 131 DQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESI 210 (375)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHHHTTCGGGTSCHHHHHSSCHHHHHHHHHHHHHTTTTCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhhhccchhhcccCCHHHhhhcccHHHhCCHHHHHHhChHHHHHHHHHHHHHhhCCCHHHHH
Confidence 3578999999999999999999853211 0 001 1 111123678889999999999
Q ss_pred HHHHHHHHHhCCCcc
Q 008260 92 RLFVKILEEEDPGWY 106 (572)
Q Consensus 92 ~~yi~~~~~~~p~~~ 106 (572)
.+|++++++ .|.|.
T Consensus 211 ~~yL~~~~~-l~~yG 224 (375)
T 2al6_A 211 LKFFEILSP-VYRFD 224 (375)
T ss_dssp HHHHHHHTT-TCCCS
T ss_pred HHHHHHHhh-cccCC
Confidence 999999988 45543
No 258
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=67.75 E-value=55 Score=35.64 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=66.8
Q ss_pred EEeCCEEEEEeccCCCCCcceeEEEEECCCCc--eEEeccCCCC--C---CCCcceEEEEECCEEEEEecCCCCCCCCCc
Q 008260 252 IPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTYGKP--P---VSRGGQSVTLVGTSLVIFGGEDAKRSLLND 324 (572)
Q Consensus 252 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~g~~--p---~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 324 (572)
++.++.||+.... ..++.+|..+.+ |+.-...... + ......+.++.+++||+... -..
T Consensus 63 ~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~ 128 (668)
T 1kv9_A 63 LFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGR 128 (668)
T ss_dssp EEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSE
T ss_pred EEECCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CCE
Confidence 4579999998652 368899987654 8764321000 0 00012234567888887532 245
Q ss_pred eEEEECCCC--cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc--EEee
Q 008260 325 LHILDLETM--TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WSRP 389 (572)
Q Consensus 325 v~~yd~~t~--~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~v 389 (572)
++.+|..|. .|+.-... .........+.++. ++.+|+-.+......-..++.||.++.+ |+.-
T Consensus 129 l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 129 LIALDAKTGKAIWSQQTTD-PAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEEETTTCCEEEEEECSC-TTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEeeeeccCC-CCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 999998876 48765422 00111122223344 5556653222111233579999998764 8764
No 259
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=65.24 E-value=96 Score=29.49 Aligned_cols=145 Identities=10% Similarity=0.104 Sum_probs=72.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
++..++.|+.+ ..+.++|+.+.+-... .. .....-..+.+ ++.+++.|+.+.
T Consensus 76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~~--~~-------------~h~~~v~~~~~~~~~~~l~s~s~D~------ 129 (319)
T 3frx_A 76 DGAYALSASWD-----KTLRLWDVATGETYQR--FV-------------GHKSDVMSVDIDKKASMIISGSRDK------ 129 (319)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEE--EE-------------CCSSCEEEEEECTTSCEEEEEETTS------
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCeeEE--Ec-------------cCCCcEEEEEEcCCCCEEEEEeCCC------
Confidence 45566666632 3588899888753221 11 00111112222 567777787764
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE-------CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCC
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-------GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPP 345 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-------~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p 345 (572)
.+.+||.....-..+.. ....-.++... ++.+++.|+.+ ..+.++|+.+.+-...-..
T Consensus 130 ~i~vwd~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~---- 194 (319)
T 3frx_A 130 TIKVWTIKGQCLATLLG-----HNDWVSQVRVVPNEKADDDSVTIISAGND------KMVKAWNLNQFQIEADFIG---- 194 (319)
T ss_dssp CEEEEETTSCEEEEECC-----CSSCEEEEEECCC------CCEEEEEETT------SCEEEEETTTTEEEEEECC----
T ss_pred eEEEEECCCCeEEEEec-----cCCcEEEEEEccCCCCCCCccEEEEEeCC------CEEEEEECCcchhheeecC----
Confidence 47788886554333321 00111112222 22356666653 3488888877653322111
Q ss_pred CcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 346 SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 346 ~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
....-.+++...++.+++.||.+ ..+.++|+.+.+
T Consensus 195 h~~~v~~~~~sp~g~~l~s~~~d-----g~i~iwd~~~~~ 229 (319)
T 3frx_A 195 HNSNINTLTASPDGTLIASAGKD-----GEIMLWNLAAKK 229 (319)
T ss_dssp CCSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Confidence 11122234444555677888765 457777776654
No 260
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=65.05 E-value=97 Score=29.46 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=74.7
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++..++.|+.+. .|.+||+.+.+-...-. + ....-.++... ++.+++.|+.++ .+.++|+...
T Consensus 76 dg~~l~s~s~D~------~v~~wd~~~~~~~~~~~-~---h~~~v~~~~~~~~~~~l~s~s~D~------~i~vwd~~~~ 139 (319)
T 3frx_A 76 DGAYALSASWDK------TLRLWDVATGETYQRFV-G---HKSDVMSVDIDKKASMIISGSRDK------TIKVWTIKGQ 139 (319)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEE-C---CSSCEEEEEECTTSCEEEEEETTS------CEEEEETTSC
T ss_pred CCCEEEEEeCCC------EEEEEECCCCCeeEEEc-c---CCCcEEEEEEcCCCCEEEEEeCCC------eEEEEECCCC
Confidence 567777777654 58899998875322211 0 01111222222 456777787643 3778887655
Q ss_pred cEEEeeCCCCCCCcccceEEEEEc------CCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEE
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHA------ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTI 407 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~------~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~ 407 (572)
.-..+... . ..-.+..... ++.+++.|+.+ ..+..+|+.+.+-...-. + ....-.+++..
T Consensus 140 ~~~~~~~h----~-~~v~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~-~---h~~~v~~~~~s 205 (319)
T 3frx_A 140 CLATLLGH----N-DWVSQVRVVPNEKADDDSVTIISAGND-----KMVKAWNLNQFQIEADFI-G---HNSNINTLTAS 205 (319)
T ss_dssp EEEEECCC----S-SCEEEEEECCC------CCEEEEEETT-----SCEEEEETTTTEEEEEEC-C---CCSCEEEEEEC
T ss_pred eEEEEecc----C-CcEEEEEEccCCCCCCCccEEEEEeCC-----CEEEEEECCcchhheeec-C---CCCcEEEEEEc
Confidence 43333211 1 1111122221 23366667654 458888988765433210 1 11111122222
Q ss_pred CCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCc
Q 008260 408 GENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 408 ~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
. .+.+++.||.++. |.+||+.+..
T Consensus 206 p----------------~g~~l~s~~~dg~----i~iwd~~~~~ 229 (319)
T 3frx_A 206 P----------------DGTLIASAGKDGE----IMLWNLAAKK 229 (319)
T ss_dssp T----------------TSSEEEEEETTCE----EEEEETTTTE
T ss_pred C----------------CCCEEEEEeCCCe----EEEEECCCCc
Confidence 2 2267788887654 8888887653
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=64.88 E-value=64 Score=30.89 Aligned_cols=111 Identities=11% Similarity=-0.020 Sum_probs=59.9
Q ss_pred eeEEEEECCCCceEEeccCCCC---------------CCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCc
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKP---------------PVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~---------------p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 334 (572)
..+++||+.+.+++.+...... +....-+++++. ++.|||.... +.+.+||+.+..
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~-------~~i~~~d~~~g~ 112 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY-------YHLSVVGSEGGH 112 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT-------TEEEEECTTCEE
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC-------CCEEEEeCCCCE
Confidence 3688899888777665421100 000112445555 5789987432 348889988766
Q ss_pred EEEeeCCCCCCCcccceEEEEEc-CCEEEEEeCCCC------------CcCcCcEEEEECCCCcEEee
Q 008260 335 WDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSH------------AACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 335 W~~v~~~g~~p~~R~~~~~~~~~-~~~lyv~GG~~~------------~~~~~~v~~yd~~t~~W~~v 389 (572)
.+.+...........-...++.. ++.||+.-.... ......+++||+.+.+.+.+
T Consensus 113 ~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 113 ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 65554220000111223455555 566888643211 01124699999988876654
No 262
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=64.81 E-value=95 Score=31.00 Aligned_cols=19 Identities=11% Similarity=0.338 Sum_probs=15.3
Q ss_pred cceEEEEEcCCEEEEEeCC
Q 008260 349 SDHAAAVHAERYLLIFGGG 367 (572)
Q Consensus 349 ~~~~~~~~~~~~lyv~GG~ 367 (572)
..|++++..++.+|.+|-.
T Consensus 222 ~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 222 DAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp SCEEEEEETTTEEEEEECC
T ss_pred CcEEEEEccCCEEEEEeCC
Confidence 3688888888899999953
No 263
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=62.24 E-value=95 Score=32.54 Aligned_cols=110 Identities=12% Similarity=0.001 Sum_probs=61.1
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEE-ECCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++.++++.+... .+.+||+.+.+-..+... +. ...+. -+++.+++++.+... ...++++|+.+.
T Consensus 121 g~~~~~~s~~~~------~~~l~d~~~g~~~~l~~~---~~----~~~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g 185 (582)
T 3o4h_A 121 GEAVVFTGATED------RVALYALDGGGLRELARL---PG----FGFVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSG 185 (582)
T ss_dssp SSCEEEEEECSS------CEEEEEEETTEEEEEEEE---SS----CEEEEEEETTEEEEEEEEETT--EEEEEEEETTTC
T ss_pred CCeEEEEecCCC------CceEEEccCCcEEEeecC---CC----ceEEECCCCCEEEEEEEcCCC--CeEEEEEcCCCC
Confidence 445555555432 234778888877776531 21 22222 244444555443322 245999999999
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
+++.+... .......+...|++.++.+..++ ...|+++|+.+.+..
T Consensus 186 ~~~~l~~~-----~~~~~~~~~SpDG~~l~~~~~~~---~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 186 GLRVFDSG-----EGSFSSASISPGMKVTAGLETAR---EARLVTVDPRDGSVE 231 (582)
T ss_dssp CCEEECCS-----SCEEEEEEECTTSCEEEEEECSS---CEEEEEECTTTCCEE
T ss_pred CceEeecC-----CCccccceECCCCCEEEEccCCC---eeEEEEEcCCCCcEE
Confidence 98877432 12223344444554444433221 247999999988877
No 264
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=61.02 E-value=1.4e+02 Score=29.94 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=15.5
Q ss_pred ccceEEEEEcCCEEEEEeCC
Q 008260 348 RSDHAAAVHAERYLLIFGGG 367 (572)
Q Consensus 348 R~~~~~~~~~~~~lyv~GG~ 367 (572)
-..|++++..++.||.+|-.
T Consensus 337 G~~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 337 GWRHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp CSSEEEEEETTSCEEEEECC
T ss_pred CCCeEEEEeCCCCEEEecCC
Confidence 35678888888889999854
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=59.77 E-value=1.2e+02 Score=28.74 Aligned_cols=159 Identities=11% Similarity=-0.028 Sum_probs=81.8
Q ss_pred eeEEEE-CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCC
Q 008260 189 HGAAVV-QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTK 266 (572)
Q Consensus 189 ~s~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~ 266 (572)
+++++. +++||+....... ..+++||+.+.+.+.+.... ..+.....+.. ++.+|+.--
T Consensus 75 ~gia~~~dG~l~vad~~~~~---~~v~~~d~~~g~~~~~~~~~-------------~~~~~~g~~~~~~~~~~v~d~--- 135 (306)
T 2p4o_A 75 SGLAFTSNGDLVATGWNADS---IPVVSLVKSDGTVETLLTLP-------------DAIFLNGITPLSDTQYLTADS--- 135 (306)
T ss_dssp EEEEECTTSCEEEEEECTTS---CEEEEEECTTSCEEEEEECT-------------TCSCEEEEEESSSSEEEEEET---
T ss_pred eeEEEcCCCcEEEEeccCCc---ceEEEEcCCCCeEEEEEeCC-------------CccccCcccccCCCcEEEEEC---
Confidence 344443 4678887532111 24889998888887665432 23333333333 556777532
Q ss_pred CCCcceeEEEEECCCCceEE--eccCCC--CCCC--CcceEEEEECCEEEEEecCCCCCCCCCceEEEECCC-CcE---E
Q 008260 267 DPSEIIQVKVFDLQTCSWST--LKTYGK--PPVS--RGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLET-MTW---D 336 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~W~~--~~~~g~--~p~~--R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t-~~W---~ 336 (572)
....++++|+.+.+-+. ...... .+.. ....+....++.||+.-- ..+.+++||++. .+. .
T Consensus 136 ---~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~------~~~~I~~~~~~~~g~~~~~~ 206 (306)
T 2p4o_A 136 ---YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT------EKMLLLRIPVDSTDKPGEPE 206 (306)
T ss_dssp ---TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET------TTTEEEEEEBCTTSCBCCCE
T ss_pred ---CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC------CCCEEEEEEeCCCCCCCccE
Confidence 12378999987642111 110000 0111 112223334668888643 246799999875 221 1
Q ss_pred EeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 337 EIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 337 ~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
.+... .. -...++..++.|||.-..+ +.|.+||+. .+..
T Consensus 207 ~~~~~---~~---P~gi~vd~dG~l~va~~~~-----~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 207 IFVEQ---TN---IDDFAFDVEGNLYGATHIY-----NSVVRIAPD-RSTT 245 (306)
T ss_dssp EEEES---CC---CSSEEEBTTCCEEEECBTT-----CCEEEECTT-CCEE
T ss_pred EEecc---CC---CCCeEECCCCCEEEEeCCC-----CeEEEECCC-CCEE
Confidence 11111 11 2334555556688875422 569999986 4443
No 266
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=59.53 E-value=1e+02 Score=27.77 Aligned_cols=153 Identities=15% Similarity=0.183 Sum_probs=80.7
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCC--c-EEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCC
Q 008260 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--A-WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (572)
Q Consensus 190 s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~-W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 266 (572)
+++.+.+++|+|-| +.+|+++.... . =..+... -+.+|. ....+....++++|+|-|.
T Consensus 10 A~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~---------w~glP~-~iDAa~~~~~g~~yfFkg~-- 70 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQF---------WRGLPA-SINTAYERKDGKFVFFKGD-- 70 (196)
T ss_dssp EEEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHH---------STTCCS-SCCEEEECTTSCEEEEETT--
T ss_pred EEEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHh---------ccCCCC-CccEEEEeCCCcEEEecCC--
Confidence 34467899999988 46788753210 0 0111110 112222 3333322347889999774
Q ss_pred CCCcceeEEEEECCCCce---EEeccCC-CCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEE----
Q 008260 267 DPSEIIQVKVFDLQTCSW---STLKTYG-KPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWD---- 336 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~W---~~~~~~g-~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~---- 336 (572)
.+|+|+..+... ..+...+ .+|..... +|... ++++|+|=| +..|+||..+.+-.
T Consensus 71 ------~yw~~~~~~~~~gyPk~I~~~~~glP~~~ID-AA~~~~~~g~~yfFkG--------~~yw~yd~~~~~v~~gyP 135 (196)
T 3c7x_A 71 ------KHWVFDEASLEPGYPKHIKELGRGLPTDKID-AALFWMPNGKTYFFRG--------NKYYRFNEELRAVDSEYP 135 (196)
T ss_dssp ------EEEEEETTEECTTCSEEGGGTCBSCCSSCCS-EEEEETTTTEEEEEET--------TEEEEEETTTTEECTTCS
T ss_pred ------EEEEEeCCcccCCCCeEhhhcCCCCCCCccc-EEEEEccCCEEEEEEC--------CEEEEEeCCcccccCCCC
Confidence 578887542111 1222211 13323233 33333 589999966 34789998765321
Q ss_pred -EeeCCCCCCCcccceEEEEEcCC-EEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 337 -EIDAVGVPPSPRSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 337 -~v~~~g~~p~~R~~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
.+.... -.|..-.++....++ .+|+|=| +..|+||..+.+
T Consensus 136 k~i~~~~--gip~~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 136 KNIKVWE--GIPESPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp EEGGGSB--TCCSSCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred ccHHHCC--CcCCCcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 111110 112223444444444 8999988 678999988765
No 267
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=58.94 E-value=1.4e+02 Score=29.42 Aligned_cols=150 Identities=11% Similarity=0.019 Sum_probs=80.8
Q ss_pred cEEEEEcCC--CcEEEeeecccccCCCCCCCCCCCCCcceeEEEe---CCEEEEEeccCCCCCcceeEEEEECCCCceEE
Q 008260 212 DMHILDLRS--WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW---ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWST 286 (572)
Q Consensus 212 ~v~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 286 (572)
.+++++... .+|+.+.... ....-++++.. ++.||+.+..... -..|++.+-...+|+.
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~~-------------~~~~v~~i~~dp~~~~~l~~g~~~g~~---g~gl~~s~D~G~tW~~ 95 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPVF-------------LGHTIHHIVQDPREPERMLMAARTGHL---GPTVFRSDDGGGNWTE 95 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEES-------------TTSEEEEEEECSSSTTCEEEEEEC--C---CEEEEEESSTTSCCEE
T ss_pred ceEEEECCCCCCCceECCccC-------------CCCceEEEEECCCCCCeEEEEecCCCC---CccEEEeCCCCCCceE
Confidence 377787655 7899875321 22223444443 4678876543111 1257777777789999
Q ss_pred eccCCCCCCC--C-----cce--EEEEE----CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCC-------
Q 008260 287 LKTYGKPPVS--R-----GGQ--SVTLV----GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPS------- 346 (572)
Q Consensus 287 ~~~~g~~p~~--R-----~~~--~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~------- 346 (572)
+......+.. + ..+ +.++. .+.||+.+- ...|++.+-...+|+.+......|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~ 168 (394)
T 3b7f_A 96 ATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGG 168 (394)
T ss_dssp CSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCC
T ss_pred CCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec-------CCcEEEEcCCCCCeEECcCccCCccccccccc
Confidence 8632111111 1 111 23332 467776542 2358888777889998853211111
Q ss_pred -------cccceEEEEEc--CCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 347 -------PRSDHAAAVHA--ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 347 -------~R~~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
....++.++.. .+.||+.... ..+++.+-...+|+.+.
T Consensus 169 ~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~ 215 (394)
T 3b7f_A 169 EQDGTPDGPKMHSILVDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLN 215 (394)
T ss_dssp C----CCCCEEEEEEECTTCTTCEEEEEET------BEEEEESSTTSSCEECC
T ss_pred cccCCCCCCceeEEEECCCCCCEEEEEECC------CCEEEECCCCCCceECC
Confidence 11223444431 3457775432 34888888888999874
No 268
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=57.65 E-value=1.5e+02 Score=29.28 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=43.2
Q ss_pred CCEEEEEecCCC---CCCCCCceEEEECCCCcE-EEeeCCCCCCCcccceEEEEEcCC--EEEEEeCCCCCcCcCcEEEE
Q 008260 306 GTSLVIFGGEDA---KRSLLNDLHILDLETMTW-DEIDAVGVPPSPRSDHAAAVHAER--YLLIFGGGSHAACFNDLHVL 379 (572)
Q Consensus 306 ~~~iyv~GG~~~---~~~~~~~v~~yd~~t~~W-~~v~~~g~~p~~R~~~~~~~~~~~--~lyv~GG~~~~~~~~~v~~y 379 (572)
++++|+...... .....++++++|+.+.+- ..++ .+...++..+..++ .+|+..+.+ ++|.++
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~------~g~~p~~i~~s~Dg~~~l~v~~~~~-----~~V~Vi 346 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS------LGHDVDAISVAQDGGPDLYALSAGT-----EVLHIY 346 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE------CCCCcCeEEECCCCCeEEEEEcCCC-----CeEEEE
Confidence 578999754211 111357899999988765 3342 23334555555554 355544222 789999
Q ss_pred ECCCCcEEe
Q 008260 380 DLQTMEWSR 388 (572)
Q Consensus 380 d~~t~~W~~ 388 (572)
|..+.+-..
T Consensus 347 D~~t~~vv~ 355 (373)
T 2mad_H 347 DAGAGDQDQ 355 (373)
T ss_pred ECCCCCEEe
Confidence 998876543
No 269
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=54.70 E-value=68 Score=32.39 Aligned_cols=73 Identities=15% Similarity=0.060 Sum_probs=45.1
Q ss_pred CCEEEEEec---CCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCC--EEEEEeCCCCCcCcCcEEEEE
Q 008260 306 GTSLVIFGG---EDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAER--YLLIFGGGSHAACFNDLHVLD 380 (572)
Q Consensus 306 ~~~iyv~GG---~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~--~lyv~GG~~~~~~~~~v~~yd 380 (572)
++++||.-+ .......-+.++++|+.+.+-..-- +.+..-.++.+..++ .||+.-+.+ ++|.+||
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i-----~vg~~~~~lavs~D~~~~ly~tn~~~-----~~VsViD 360 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-----EMGHEIDSINVSQDEKPLLYALSTGD-----KTLYIHD 360 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE-----EEEEEECEEEECSSSSCEEEEEETTT-----TEEEEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEE-----ECCCCcceEEECCCCCeEEEEEcCCC-----CeEEEEE
Confidence 679999743 2222223468999999988764443 233333455554443 577754432 6899999
Q ss_pred CCCCcEEe
Q 008260 381 LQTMEWSR 388 (572)
Q Consensus 381 ~~t~~W~~ 388 (572)
..+.+-..
T Consensus 361 ~~t~k~~~ 368 (386)
T 3sjl_D 361 AESGEELR 368 (386)
T ss_dssp TTTCCEEE
T ss_pred CCCCcEEE
Confidence 99887543
No 270
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=54.01 E-value=2e+02 Score=32.75 Aligned_cols=172 Identities=9% Similarity=-0.020 Sum_probs=0.0
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEE-EEECCCCceEEecc
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVK-VFDLQTCSWSTLKT 289 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~-~yd~~~~~W~~~~~ 289 (572)
..++.+|..+.....+.... ..+..+.... +++.+++++. ...++ ++|..+.+...+
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~~~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l-- 374 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKVPEPL-------------RIRYVRRGGD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKF-- 374 (1045)
T ss_dssp TEEEEECTTSSBEEECSCCS-------------CEEEEEECSS-SEEEEEEEET------TEEEEEEEETTTCCEEEC--
T ss_pred CEEEEEcCCCCceEEccCCC-------------cceEEeeeEc-CCCeEEEEEC------CCceEEEEECCCCCceEe--
Q ss_pred CCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCC
Q 008260 290 YGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH 369 (572)
Q Consensus 290 ~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~ 369 (572)
..........+..-+++.++++..+. +++++|+.+.+-..+... ........+...++..+++++...
T Consensus 375 --~~~~~~~~~~~~SpDG~~la~~~~~~------~v~~~d~~tg~~~~~~~~----~~~~v~~~~~SpDG~~la~~~~~~ 442 (1045)
T 1k32_A 375 --EENLGNVFAMGVDRNGKFAVVANDRF------EIMTVDLETGKPTVIERS----REAMITDFTISDNSRFIAYGFPLK 442 (1045)
T ss_dssp --CCCCCSEEEEEECTTSSEEEEEETTS------EEEEEETTTCCEEEEEEC----SSSCCCCEEECTTSCEEEEEEEEC
T ss_pred --cCCccceeeeEECCCCCEEEEECCCC------eEEEEECCCCceEEeccC----CCCCccceEECCCCCeEEEEecCc
Q ss_pred -----CcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCC
Q 008260 370 -----AACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNG 436 (572)
Q Consensus 370 -----~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~ 436 (572)
......++++|+.+.+...+ ..........+...+ ...|+.....+.
T Consensus 443 ~~~~~~~~~~~i~l~d~~~g~~~~l-----~~~~~~~~~~~~spd---------------G~~l~~~s~~~~ 494 (1045)
T 1k32_A 443 HGETDGYVMQAIHVYDMEGRKIFAA-----TTENSHDYAPAFDAD---------------SKNLYYLSYRSL 494 (1045)
T ss_dssp SSTTCSCCEEEEEEEETTTTEEEEC-----SCSSSBEEEEEECTT---------------SCEEEEEESCCC
T ss_pred cccccCCCCCeEEEEECCCCcEEEe-----eCCCcccCCceEcCC---------------CCEEEEEecccC
No 271
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=53.60 E-value=1.4e+02 Score=27.62 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=30.0
Q ss_pred CceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcE
Q 008260 323 NDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (572)
Q Consensus 323 ~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W 386 (572)
..+.++|..+..-...... ............++.+++.+|... ..+.+||..+.+-
T Consensus 221 ~~i~lwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~sg~~d----~~i~iwd~~~~~~ 276 (318)
T 4ggc_A 221 RHIRIWNVCSGACLSAVDA----HSQVCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMAK 276 (318)
T ss_dssp CEEEEEETTTCCEEEEEEC----SSCEEEEEEETTTTEEEEEECTTT----CCEEEEETTTCCE
T ss_pred CEEEEEecccccccccccc----eeeeeeeeecccccceEEEEEcCC----CEEEEEECCCCcE
Confidence 3577888877765544322 111122222223455665555332 4588999887654
No 272
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=53.40 E-value=1.7e+02 Score=28.50 Aligned_cols=112 Identities=14% Similarity=0.214 Sum_probs=59.1
Q ss_pred eCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcce-EEEEE-CCEEEEEecCCCCCCCCCceEEEECC
Q 008260 254 WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQ-SVTLV-GTSLVIFGGEDAKRSLLNDLHILDLE 331 (572)
Q Consensus 254 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~-~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~ 331 (572)
-++..++.++.+.. ....++.+|............ ......... ++++. ++++++.|+.+ +.|.+||..
T Consensus 229 pdg~~l~~~s~d~~--~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~Spdg~~lasgs~D------~~V~iwd~~ 299 (365)
T 4h5i_A 229 ADDTVLIAASLKKG--KGIVLTKISIKSGNTSVLRSK-QVTNRFKGITSMDVDMKGELAVLASND------NSIALVKLK 299 (365)
T ss_dssp ETTEEEEEEEESSS--CCEEEEEEEEETTEEEEEEEE-EEESSCSCEEEEEECTTSCEEEEEETT------SCEEEEETT
T ss_pred CCCCEEEEEecCCc--ceeEEeecccccceecceeee-eecCCCCCeEeEEECCCCCceEEEcCC------CEEEEEECC
Confidence 37888888876543 223566777666655433211 011111111 22222 67788888864 348899988
Q ss_pred CCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECC
Q 008260 332 TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQ 382 (572)
Q Consensus 332 t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~ 382 (572)
+.+-...-..+ ....-.+++...++.+++.|+.+ +.|.++|+.
T Consensus 300 ~~~~~~~~~~g---H~~~V~~v~fSpdg~~laS~S~D-----~tvrvw~ip 342 (365)
T 4h5i_A 300 DLSMSKIFKQA---HSFAITEVTISPDSTYVASVSAA-----NTIHIIKLP 342 (365)
T ss_dssp TTEEEEEETTS---SSSCEEEEEECTTSCEEEEEETT-----SEEEEEECC
T ss_pred CCcEEEEecCc---ccCCEEEEEECCCCCEEEEEeCC-----CeEEEEEcC
Confidence 76532211110 11111233444567788888765 457777764
No 273
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=51.01 E-value=98 Score=33.46 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=77.2
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCC-cEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCC
Q 008260 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW-AWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKD 267 (572)
Q Consensus 190 s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~-~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~ 267 (572)
+++.+.+++|+|=| +.+|+++.... ......... .-+.+| .....+... .++++|+|=|.
T Consensus 448 Ait~~rg~~yfFKg-------~~yWr~~~~~~~~~~P~~Is~-------~wp~LP-~~IDAA~~~~~~~k~yFFkG~--- 509 (631)
T 1ck7_A 448 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVAT-------FWPELP-EKIDAVYEAPQEEKAVFFAGN--- 509 (631)
T ss_dssp EEEECSSSEEEECS-------SEEEEESCTTSCCEEEEEGGG-------TCTTSC-SSCSBCCEETTTTEEEEEETT---
T ss_pred eeEecCCcEEEEcC-------CEEEEEcCCCCCCCCceeccc-------cCCCCC-ccceEEEEECCCCEEEEEecC---
Confidence 44556788999987 35788876542 222111110 011222 222322222 26889999774
Q ss_pred CCcceeEEEEECCCC--ce-EEeccCCCCCCC--CcceEEEE--ECCEEEEEecCCCCCCCCCceEEEECCCCcEE----
Q 008260 268 PSEIIQVKVFDLQTC--SW-STLKTYGKPPVS--RGGQSVTL--VGTSLVIFGGEDAKRSLLNDLHILDLETMTWD---- 336 (572)
Q Consensus 268 ~~~~~~v~~yd~~~~--~W-~~~~~~g~~p~~--R~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~---- 336 (572)
.+|+|+..+. .+ ..|...| .|.. +.. ++.. .++++|+|=| +..|+||..+.+-.
T Consensus 510 -----~yWry~~~~l~~GYPk~Is~~G-~P~~~~~ID-AAf~~~~~gktYFFkG--------~~ywryd~~~~~vd~gYP 574 (631)
T 1ck7_A 510 -----EYWIYSASTLERGYPKPLTSLG-LPPDVQRVD-AAFNWSKNKKTYIFAG--------DKFWRYNEVKKKMDPGFP 574 (631)
T ss_dssp -----EEEEEETTEECTTCCEEGGGGT-CCTTCCCCC-BCCCCTTTCEEEEEET--------TEEEEEETTTTEECTTCC
T ss_pred -----EEEEECCCccccCCCccchhcC-CCCCCCcce-eEEEecCCCeEEEEEC--------CEEEEEcCCcccccCCCC
Confidence 5788885321 01 1222212 1211 122 2222 2679999966 35889997655311
Q ss_pred -EeeCCCCCCCcccceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 337 -EIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 337 -~v~~~g~~p~~R~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
.+... -+..+..-.++.... ++.+|+|=| +..|+||..+..
T Consensus 575 k~i~~~-w~G~p~~iDAAf~~~~~g~~YFFkG-------~~Ywr~d~~~~~ 617 (631)
T 1ck7_A 575 KLIADA-WNAIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 617 (631)
T ss_dssp EETTTS-CSSCCTTCCEEECCTTSCBCEEEET-------TEEECCBTTBTT
T ss_pred cchHhh-cCCCCCCCcEeEEEcCCCeEEEEEC-------CEEEEEeCccce
Confidence 11110 011222233444433 467999988 567888876543
No 274
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=50.85 E-value=7.1 Score=39.85 Aligned_cols=70 Identities=17% Similarity=0.087 Sum_probs=49.5
Q ss_pred CCCChhhHHHHhhheeeeeeCCCCCCC----C---------CC---C--Chhhh--------HhHHHhhcCCCCCHHHHH
Q 008260 38 SKFSNDSALLLYALYQQATVGPCNVPK----P---------SS---W--SPVEQ--------SKWKSWQGLGNMATTEAM 91 (572)
Q Consensus 38 ~~~~~~~~l~lY~l~kQat~G~~~~~~----p---------~~---~--~~~~~--------~k~~aW~~~~~~~~~~a~ 91 (572)
...+.|+.|+|-+|--|+-+||++... . +. + ++... .=....+++.+++.++||
T Consensus 151 ~~~~~e~al~LAaL~~q~~~gd~~~~a~~~k~~~~~l~k~~~lk~flP~~l~~~ik~k~~rk~I~~~~kk~~~ls~~eak 230 (392)
T 4eku_A 151 SKVSEGMALQLGCLELRRFFKDMPHNALDKKSNFELLEKEVGLDLFFPKQMQENLKPKQFRKMIQQTFQQYASLREEECV 230 (392)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHHHHTCGGGTSCHHHHHHSCHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhhcchhhhccCCCHHHHhhhccHHHhcCHHHHhhcCHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 457899999999999999999876321 0 10 1 11111 112356678999999999
Q ss_pred HHHHHHHHHhCCCcccc
Q 008260 92 RLFVKILEEEDPGWYSR 108 (572)
Q Consensus 92 ~~yi~~~~~~~p~~~~~ 108 (572)
.+|++.++++ |.|...
T Consensus 231 l~YL~~l~~L-p~yG~e 246 (392)
T 4eku_A 231 MKFFNTLAGF-ANIDQE 246 (392)
T ss_dssp HHHHHHHTTS-SCCSCE
T ss_pred HHHHHHHHhh-hccCcE
Confidence 9999999997 776543
No 275
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=50.77 E-value=1.4e+02 Score=26.78 Aligned_cols=153 Identities=12% Similarity=0.125 Sum_probs=77.3
Q ss_pred eEEEeCCEEEEEeccCCCCCcceeEEEEECCC---CceEEeccC-CCCCCCCcceEEEEECCEEEEEecCCCCCCCCCce
Q 008260 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQT---CSWSTLKTY-GKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDL 325 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~---~~W~~~~~~-g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v 325 (572)
+++.+++.+|+|-|. .+|+++... .-=..+... ..+|. ....+....++++|+|-| +..
T Consensus 10 A~~~~~g~~~fFkg~--------~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg--------~~y 72 (196)
T 3c7x_A 10 TVAMLRGEMFVFKER--------WFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG--------DKH 72 (196)
T ss_dssp EEEEETTEEEEEETT--------EEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET--------TEE
T ss_pred EEEEcCCEEEEEECC--------EEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC--------CEE
Confidence 344678999999875 467775321 001122211 02343 222222123678999866 347
Q ss_pred EEEECCCCcE---EEeeCCC-CCCCcccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe-----eccCCCC
Q 008260 326 HILDLETMTW---DEIDAVG-VPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTMEWSR-----PTQQGEI 395 (572)
Q Consensus 326 ~~yd~~t~~W---~~v~~~g-~~p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-----v~~~g~~ 395 (572)
|+|+-.+... ..+...+ ..|..+.. ++... .++++|+|=| +..|+||..+++-.. +..-..+
T Consensus 73 w~~~~~~~~~gyPk~I~~~~~glP~~~ID-AA~~~~~~g~~yfFkG-------~~yw~yd~~~~~v~~gyPk~i~~~~gi 144 (196)
T 3c7x_A 73 WVFDEASLEPGYPKHIKELGRGLPTDKID-AALFWMPNGKTYFFRG-------NKYYRFNEELRAVDSEYPKNIKVWEGI 144 (196)
T ss_dssp EEEETTEECTTCSEEGGGTCBSCCSSCCS-EEEEETTTTEEEEEET-------TEEEEEETTTTEECTTCSEEGGGSBTC
T ss_pred EEEeCCcccCCCCeEhhhcCCCCCCCccc-EEEEEccCCEEEEEEC-------CEEEEEeCCcccccCCCCccHHHCCCc
Confidence 8887432110 1222221 12322233 33332 4578999988 678999987754321 1100012
Q ss_pred CCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 396 PTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 396 p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
| ..-.++....+ .+.+|+|=| +..|.||..+.
T Consensus 145 p--~~idaAf~~~~---------------~~~~YfFkg------~~y~r~d~~~~ 176 (196)
T 3c7x_A 145 P--ESPRGSFMGSD---------------EVFTYFYKG------NKYWKFNNQKL 176 (196)
T ss_dssp C--SSCSEEEECTT---------------SSEEEEEET------TEEEEEETTTT
T ss_pred C--CCcceeEEecC---------------CCEEEEEEC------CEEEEEECCcc
Confidence 2 11123333322 237899877 56899997664
No 276
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=50.60 E-value=3.5e+02 Score=31.33 Aligned_cols=190 Identities=14% Similarity=0.070 Sum_probs=103.7
Q ss_pred cceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceE-Eecc-CCCCCCCCcceEEEEE---CCEEEEEecCCCCCCC
Q 008260 247 AGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWS-TLKT-YGKPPVSRGGQSVTLV---GTSLVIFGGEDAKRSL 321 (572)
Q Consensus 247 ~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~-~g~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~ 321 (572)
.++++....+.+ ++|.-... .....++.|+.....|- .... .+.+.....++++++- +...||+|--... .
T Consensus 335 ~GfSa~~t~d~~-~~GapG~~-~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~~~--~ 410 (1095)
T 3k6s_A 335 EGFSAVFTPDGP-VLGAVGSF-TWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPRYQ--H 410 (1095)
T ss_dssp TTSSEECCTTCC-EEEESCST-TTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETTGG--G
T ss_pred ccccceecCCcc-eEcccccC-CccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEccccc--c
Confidence 556666555555 77765433 33456778876654432 2211 1123334445666542 3345677643211 2
Q ss_pred CCceEEEECCCCcEEEeeCC-CCCCCcccceEEEEEc---C--CEEEEEeCCC--CCcCcCcEEEEECCC--CcEEeecc
Q 008260 322 LNDLHILDLETMTWDEIDAV-GVPPSPRSDHAAAVHA---E--RYLLIFGGGS--HAACFNDLHVLDLQT--MEWSRPTQ 391 (572)
Q Consensus 322 ~~~v~~yd~~t~~W~~v~~~-g~~p~~R~~~~~~~~~---~--~~lyv~GG~~--~~~~~~~v~~yd~~t--~~W~~v~~ 391 (572)
...+++|......|+..... |.......+++.++.+ | .-|+++|.-. .......+++|.... ..|.....
T Consensus 411 ~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~ 490 (1095)
T 3k6s_A 411 TGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAV 490 (1095)
T ss_dssp TCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCSS
T ss_pred cceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeEE
Confidence 56799998887788776532 3333445666676641 1 2377777421 112234688886543 35764321
Q ss_pred -CCC--CCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 392 -QGE--IPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 392 -~g~--~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
.|. .+..|++.+.+.++| ...||.+-|+|-....+.....+|+|.-..+
T Consensus 491 l~g~~~~~~~~FG~sva~~gD----------~NgDG~~Dl~VGAP~~~~~~G~vyi~~g~~~ 542 (1095)
T 3k6s_A 491 LYGEQGHPWGRFGAALTVLGD----------VNGDKLTDVVIGAPGEEENRGAVYLFHGVLG 542 (1095)
T ss_dssp CCCCCSCSSCCBTSCEEEEEC----------SSSSSCCEEEEECTTTTTSCCBEEEEEBCSS
T ss_pred eecccCCccccCccceEeecc----------cCCCCCcCEEEeCCcCCCCCCEEEEecCCCC
Confidence 121 146789999988766 2345555565533333334567888886554
No 277
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=50.22 E-value=1.5e+02 Score=27.10 Aligned_cols=156 Identities=9% Similarity=0.041 Sum_probs=86.6
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEecc
Q 008260 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGH 264 (572)
Q Consensus 189 ~s~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~ 264 (572)
+.+++. +++||+.-.. .+.++++|+....-..+.... ..+- ..++.. +++||+....
T Consensus 82 ~~ia~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~~-------------~~~P-~~i~vd~~~g~lyv~~~~ 142 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQ-----LDRIEVAKMDGTQRRVLFDTG-------------LVNP-RGIVTDPVRGNLYWTDWN 142 (267)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSS-------------CSSE-EEEEEETTTTEEEEEECC
T ss_pred cEEEEEecCCeEEEEECC-----CCEEEEEEcCCCCEEEEEECC-------------CCCc-cEEEEeeCCCEEEEEECC
Confidence 455554 5789988542 246899998764433332110 1111 233333 6899998532
Q ss_pred CCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCC
Q 008260 265 TKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVG 342 (572)
Q Consensus 265 ~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g 342 (572)
. ....++++++....-+.+... .. ..-.+.++. ++.||+.-.. .+.+++||+++..-..+...
T Consensus 143 ~----~~~~I~~~~~dg~~~~~~~~~-~~---~~P~gia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~~~- 207 (267)
T 1npe_A 143 R----DNPKIETSHMDGTNRRILAQD-NL---GLPNGLTFDAFSSQLCWVDAG------THRAECLNPAQPGRRKVLEG- 207 (267)
T ss_dssp S----SSCEEEEEETTSCCCEEEECT-TC---SCEEEEEEETTTTEEEEEETT------TTEEEEEETTEEEEEEEEEC-
T ss_pred C----CCcEEEEEecCCCCcEEEEEC-CC---CCCcEEEEcCCCCEEEEEECC------CCEEEEEecCCCceEEEecC-
Confidence 1 134788888865443333211 11 122344444 5689987532 46799999876543333221
Q ss_pred CCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 343 VPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 343 ~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
...| .+.++. ++.||+.-..+ +.|+++|+.+.+-..
T Consensus 208 -~~~P---~gi~~d-~~~lyva~~~~-----~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 208 -LQYP---FAVTSY-GKNLYYTDWKT-----NSVIAMDLAISKEMD 243 (267)
T ss_dssp -CCSE---EEEEEE-TTEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred -CCCc---eEEEEe-CCEEEEEECCC-----CeEEEEeCCCCCceE
Confidence 1222 344444 66799875432 579999998876543
No 278
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=49.34 E-value=1.8e+02 Score=27.71 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=34.5
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++.+++.|+.+. .+.+||+.+.+....-. + ....-.+++.. +++.++.||.+ ..+.++|+...
T Consensus 87 ~~~~l~s~s~D~------~v~lwd~~~~~~~~~~~-~---h~~~v~~v~~sp~~~~l~s~~~d------~~i~~wd~~~~ 150 (343)
T 2xzm_R 87 ENCFAISSSWDK------TLRLWDLRTGTTYKRFV-G---HQSEVYSVAFSPDNRQILSAGAE------REIKLWNILGE 150 (343)
T ss_dssp STTEEEEEETTS------EEEEEETTSSCEEEEEE-C---CCSCEEEEEECSSTTEEEEEETT------SCEEEEESSSC
T ss_pred CCCEEEEEcCCC------cEEEEECCCCcEEEEEc-C---CCCcEEEEEECCCCCEEEEEcCC------CEEEEEeccCC
Confidence 556667777653 58899988765432211 0 11112223332 45566777754 34778887644
No 279
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=48.70 E-value=2.2e+02 Score=28.45 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=15.5
Q ss_pred ccceEEEEEcCCEEEEEeCC
Q 008260 348 RSDHAAAVHAERYLLIFGGG 367 (572)
Q Consensus 348 R~~~~~~~~~~~~lyv~GG~ 367 (572)
-..|++++..++.+|.+|-.
T Consensus 233 G~~ht~~l~~~G~v~~wG~n 252 (406)
T 4d9s_A 233 GWRHTISVSYSGALYTYGWS 252 (406)
T ss_dssp CSSEEEEEETTCCEEEEECC
T ss_pred CCCcEEEEcCCCCEEEeeCC
Confidence 35678888878889999953
No 280
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=48.38 E-value=1.8e+02 Score=27.26 Aligned_cols=141 Identities=8% Similarity=0.137 Sum_probs=71.9
Q ss_pred EEECCEEEEEccCCCCcccCcEEEEEcC-CCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCC
Q 008260 192 AVVQDKMYIYGGNHNGRYLSDMHILDLR-SWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPS 269 (572)
Q Consensus 192 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~ 269 (572)
++.++.||+... -..+++||+. ...|...... + ...+.+.. ++.||+. ..+
T Consensus 104 ~~~~~~l~v~t~------~~~l~~~d~~g~~~~~~~~~~---------------~-~~~~~~~~~~g~l~vg-t~~---- 156 (330)
T 3hxj_A 104 TIFEDILYVTSM------DGHLYAINTDGTEKWRFKTKK---------------A-IYATPIVSEDGTIYVG-SND---- 156 (330)
T ss_dssp EEETTEEEEECT------TSEEEEECTTSCEEEEEECSS---------------C-CCSCCEECTTSCEEEE-CTT----
T ss_pred eEECCEEEEEec------CCEEEEEcCCCCEEEEEcCCC---------------c-eeeeeEEcCCCEEEEE-cCC----
Confidence 344888887532 1368999987 3346543211 1 11222333 6777763 221
Q ss_pred cceeEEEEECCCC-ceEEeccCCCCCCCCcceEEEE-ECCEEEEEecCCCCCCCCCceEEEECCC-CcEEEeeCCCCCCC
Q 008260 270 EIIQVKVFDLQTC-SWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHILDLET-MTWDEIDAVGVPPS 346 (572)
Q Consensus 270 ~~~~v~~yd~~~~-~W~~~~~~g~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t-~~W~~v~~~g~~p~ 346 (572)
..++.||+... .|.... +... ..+.+. .++.||+-. ..+++||... ..|+.....
T Consensus 157 --~~l~~~d~~g~~~~~~~~-----~~~~-~~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~~~----- 214 (330)
T 3hxj_A 157 --NYLYAINPDGTEKWRFKT-----NDAI-TSAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYAGY----- 214 (330)
T ss_dssp --SEEEEECTTSCEEEEEEC-----SSCC-CSCCEECTTCCEEEES---------SSEEEECTTSCEEEEECCSS-----
T ss_pred --CEEEEECCCCCEeEEEec-----CCCc-eeeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEccCC-----
Confidence 36889998722 254432 1111 222333 256777643 3588898442 346544221
Q ss_pred cccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc-EEe
Q 008260 347 PRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME-WSR 388 (572)
Q Consensus 347 ~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~-W~~ 388 (572)
....+.+...++.||+... + ..+++||..... |..
T Consensus 215 -~~~~~~~~~~~g~l~v~t~-~-----~gl~~~~~~g~~~~~~ 250 (330)
T 3hxj_A 215 -WTVTRPAISEDGTIYVTSL-D-----GHLYAINPDGTEKWRF 250 (330)
T ss_dssp -CCCSCCEECTTSCEEEEET-T-----TEEEEECTTSCEEEEE
T ss_pred -cceeceEECCCCeEEEEcC-C-----CeEEEECCCCCEeEEe
Confidence 1122334444555777432 1 458888875544 543
No 281
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=48.21 E-value=1.5e+02 Score=27.24 Aligned_cols=145 Identities=23% Similarity=0.351 Sum_probs=73.8
Q ss_pred ECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCccee
Q 008260 194 VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 194 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~ 273 (572)
.++++|+|=| +.+|+++.....+...... ..-+.+| ..... +...++++|+|-|. .
T Consensus 27 ~~g~~yfFkg-------~~~Wr~~~~~~~~~p~~Is-------~~wpgLP-~~IDA-A~~~~~~~yfFkG~--------~ 82 (219)
T 1hxn_A 27 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIA-------HQWPQGP-STVDA-AFSWEDKLYLIQDT--------K 82 (219)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGG-------GTCTTSC-SSCSE-EEEETTEEEEEETT--------E
T ss_pred CCCcEEEEeC-------CEEEEEcCCCCCCCceEhh-------hhccCCC-CCccE-EEEECCcEEEecCC--------E
Confidence 4788999977 3577776543222111000 0011222 22333 33348999999774 5
Q ss_pred EEEEECCCC-ce-----EEecc-CCCCCCC--CcceEEEE-E--CCEEEEEecCCCCCCCCCceEEEECCCC---cEEEe
Q 008260 274 VKVFDLQTC-SW-----STLKT-YGKPPVS--RGGQSVTL-V--GTSLVIFGGEDAKRSLLNDLHILDLETM---TWDEI 338 (572)
Q Consensus 274 v~~yd~~~~-~W-----~~~~~-~g~~p~~--R~~~~~~~-~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~---~W~~v 338 (572)
+|+|+..++ +- ..+.. .| +|.. ...--+++ . ++++|+|-| +..|+||..+. .|...
T Consensus 83 yw~~~~~~~~~~~~gyPk~i~~~~G-~p~~~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~~P~~i~~~~ 153 (219)
T 1hxn_A 83 VYVFLTKGGYTLVNGYPKRLEKELG-SPPVISLEAVDAAFVCPGSSRLHIMAG--------RRLWWLDLKSGAQATWTEL 153 (219)
T ss_dssp EEEEECSSSCEECTTCCEEHHHHHC-CCSSCCCSCCCEEECCTTCCEEEEEET--------TEEEEEEGGGGGGCCCEEE
T ss_pred EEEEeCCCCceecCCCCeehhhccC-CCCcccccccceeEEecCCCEEEEEeC--------CEEEEEeCCCCceEhhhcC
Confidence 889986531 11 11221 12 2332 11122333 3 579999976 34789986542 23322
Q ss_pred eCCCCCCCcccceEEEE----------E-cCCEEEEEeCCCCCcCcCcEEEEECCC
Q 008260 339 DAVGVPPSPRSDHAAAV----------H-AERYLLIFGGGSHAACFNDLHVLDLQT 383 (572)
Q Consensus 339 ~~~g~~p~~R~~~~~~~----------~-~~~~lyv~GG~~~~~~~~~v~~yd~~t 383 (572)
.- +.... .++.. . .++.+|.|=| +..|+||..+
T Consensus 154 ~g----~p~~v-dAa~~~~~~~~~~~~~~~~~~~YFFkg-------~~y~r~~~~~ 197 (219)
T 1hxn_A 154 PW----PHEKV-DGALCMEKPLGPNSCSTSGPNLYLIHG-------PNLYCYRHVD 197 (219)
T ss_dssp CC----SCSCC-SEEEEESSCSSSCCSCSSSCEEEEEET-------TEEEEESSHH
T ss_pred CC----CCCCc-CEEEEccccccccceeccCCeEEEEEC-------CEEEEEeCCc
Confidence 11 11222 23333 1 3446999988 5688888654
No 282
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=48.18 E-value=74 Score=29.45 Aligned_cols=62 Identities=16% Similarity=0.295 Sum_probs=37.4
Q ss_pred CCEEEEEecCCCCCCCCCceEEEECCCCcE-----EEeeCCCCCCC------cccceEEEEE-cCCEEEEEeCCCCCcCc
Q 008260 306 GTSLVIFGGEDAKRSLLNDLHILDLETMTW-----DEIDAVGVPPS------PRSDHAAAVH-AERYLLIFGGGSHAACF 373 (572)
Q Consensus 306 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W-----~~v~~~g~~p~------~R~~~~~~~~-~~~~lyv~GG~~~~~~~ 373 (572)
++++|+|-| +..|+||..+++- +.+. .+ .|. +..-.++... .++++|+|=|
T Consensus 129 ~~k~yfFkG--------~~yw~~d~~~~~~~~gyPk~i~-~g-~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg------- 191 (227)
T 3lp9_A 129 GKEVYLFKG--------DQYARIDYGSNSMVNKEIKSIS-SG-YPCFRNTIFESGADAAFASHKTNEVYFFKD------- 191 (227)
T ss_dssp TTEEEEEET--------TEEEEEETTTTEESSSSCEEHH-HH-CGGGTTSGGGGCCSEEEECSSTTEEEEEET-------
T ss_pred CCEEEEEEC--------CEEEEEeCCCccccCCCCeEHH-HC-CCCccccccCCCccEEEEcCCCceEEEEEC-------
Confidence 589999976 3589999765431 1111 01 121 1223344433 4578999988
Q ss_pred CcEEEEECCCC
Q 008260 374 NDLHVLDLQTM 384 (572)
Q Consensus 374 ~~v~~yd~~t~ 384 (572)
+..|+||..+.
T Consensus 192 ~~Ywr~d~~~~ 202 (227)
T 3lp9_A 192 DHYARVKVTPX 202 (227)
T ss_dssp TEEEEEECCSS
T ss_pred CEEEEEECCcc
Confidence 67899998765
No 283
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=47.99 E-value=2.1e+02 Score=28.11 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=77.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
++.+++.|+.+ ..+.+||+.+.+-...-.. +........+.+ ++.+++.|+.++
T Consensus 181 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~-------------~~h~~~v~~~~~s~~~~~l~s~~~dg------ 236 (437)
T 3gre_A 181 EKSLLVALTNL-----SRVIIFDIRTLERLQIIEN-------------SPRHGAVSSICIDEECCVLILGTTRG------ 236 (437)
T ss_dssp SCEEEEEEETT-----SEEEEEETTTCCEEEEEEC-------------CGGGCCEEEEEECTTSCEEEEEETTS------
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeEEEcc-------------CCCCCceEEEEECCCCCEEEEEcCCC------
Confidence 36677777632 3689999987654332211 001112222233 677778887764
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE-----CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeC-CCC-C-
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-----GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDA-VGV-P- 344 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-----~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~-~g~-~- 344 (572)
.+.+||+.+.+....-. .+....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-. ... .
T Consensus 237 ~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~ 307 (437)
T 3gre_A 237 IIDIWDIRFNVLIRSWS---FGDHAPITHVEVCQFYGKNSVIVVGGSSK------TFLTIWNFVKGHCQYAFINSDEQPS 307 (437)
T ss_dssp CEEEEETTTTEEEEEEB---CTTCEEEEEEEECTTTCTTEEEEEEESTT------EEEEEEETTTTEEEEEEESSSSCCC
T ss_pred eEEEEEcCCccEEEEEe---cCCCCceEEEEeccccCCCccEEEEEcCC------CcEEEEEcCCCcEEEEEEcCCCCCc
Confidence 48899998765433211 1111111112111 23466666543 348888887665322211 100 0
Q ss_pred -----C--------------CcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 345 -----P--------------SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 345 -----p--------------~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
| ....-.+.+.. ++.+++.||.+ ..|.+||+.+.+
T Consensus 308 ~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d-----~~i~~wd~~~~~ 361 (437)
T 3gre_A 308 MEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT-----SSIVMFSLNELS 361 (437)
T ss_dssp GGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG-----TEEEEEETTCGG
T ss_pred cceecccccccccceecccccCCceEEEEEC-CceEEEecCCC-----CeEEEEECCCcc
Confidence 0 11112233444 55688888865 468899987765
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=47.56 E-value=2.5e+02 Score=30.70 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=64.1
Q ss_pred eCCEEEEEeccCCCCCcceeEEEEECCC-CceEE-eccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEEC-
Q 008260 254 WENKLLSIAGHTKDPSEIIQVKVFDLQT-CSWST-LKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL- 330 (572)
Q Consensus 254 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~-~~W~~-~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~- 330 (572)
.++.||+..-.+. .....++.+|..+ ..|+. +-+. .....-......++.|++..-.++ ...++++|+
T Consensus 329 ~g~~l~~~t~~~~--a~~~~L~~~d~~~~~~~~~~li~~---~~~~~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl~ 399 (751)
T 2xe4_A 329 GTSHLVILTNEGG--AVNHKLLIAPRGQPSDWSHVLVDH---SEDVFMESIAVRSNYLVVAGRRAG----LTRIWTMMAD 399 (751)
T ss_dssp TTTEEEEEECTTT--CTTCEEEEEETTSTTCCCCEEECC---CSSEEEEEEEECSSEEEEEEEETT----EEEEEEEECC
T ss_pred eCCEEEEEeCCCC--CCCcEEEEEcCCCcccceeeEECC---CCCcEEEEEEEECCEEEEEEEeCC----EEEEEEEecc
Confidence 3788888865541 2245788999876 68877 5321 111122234445778877765433 346889986
Q ss_pred ------CCCc-EEEeeCCCCCCCcccceEEEE-------EcCCEE-EEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 331 ------ETMT-WDEIDAVGVPPSPRSDHAAAV-------HAERYL-LIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 331 ------~t~~-W~~v~~~g~~p~~R~~~~~~~-------~~~~~l-yv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
.+.. -..+.. |.. .+...+ ..++.+ |.+... ..-..++.||+.+.+.+.+.
T Consensus 400 ~~~~~~~~g~~~~~l~l----~~~--~~~~~~~~~~~~~~~~~~l~~~~ss~---~~P~~~~~~d~~~~~~~~l~ 465 (751)
T 2xe4_A 400 SQDGVFKAGTGLREVVM----EEP--IFTVHLVESQMLEYEEPTFRMEYSSL---ATPNTWFDVSPQDHSRTAVK 465 (751)
T ss_dssp TTTSCCCTTTCCEECCC----CCS--SCEEEECGGGCCCTTCSCEEEEEEET---TEEEEEEEECTTTCCEEEEE
T ss_pred cccccccCCccceEECC----CCc--eeEEEeccCcccCCCCCEEEEEEeCC---CCCCEEEEEECCCCcEEEEe
Confidence 3443 444421 221 222222 122323 333322 22346899999888877664
No 285
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=47.55 E-value=1.9e+02 Score=27.51 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=67.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~ 273 (572)
++.+++.|+.+ ..+.++|+.+.+....-.. ....-.+++.. ++..++.||.+. .
T Consensus 87 ~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~~~--------------h~~~v~~v~~sp~~~~l~s~~~d~------~ 141 (343)
T 2xzm_R 87 ENCFAISSSWD-----KTLRLWDLRTGTTYKRFVG--------------HQSEVYSVAFSPDNRQILSAGAER------E 141 (343)
T ss_dssp STTEEEEEETT-----SEEEEEETTSSCEEEEEEC--------------CCSCEEEEEECSSTTEEEEEETTS------C
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCcEEEEEcC--------------CCCcEEEEEECCCCCEEEEEcCCC------E
Confidence 34555666632 3588899887654322110 11111122222 566667777654 4
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE-C-----------CEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCC
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-G-----------TSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAV 341 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~-----------~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~ 341 (572)
+.+||.....-..... .........++.+ . +.+++.|+.+ ..+.+||.....-..+...
T Consensus 142 i~~wd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~h 212 (343)
T 2xzm_R 142 IKLWNILGECKFSSAE---KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD------GRLKVWNTNFQIRYTFKAH 212 (343)
T ss_dssp EEEEESSSCEEEECCT---TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT------SEEEEEETTTEEEEEEECC
T ss_pred EEEEeccCCceeeeec---ccCCCceeeeeeeccccccccccCCCCCEEEEEcCC------CEEEEEcCCCceeEEEcCc
Confidence 7888876433222211 1111111112222 1 1456667654 3477788433221122111
Q ss_pred CCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECC
Q 008260 342 GVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQ 382 (572)
Q Consensus 342 g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~ 382 (572)
...-.+++...++.+++.|+.+ ..+.++|+.
T Consensus 213 -----~~~v~~~~~s~~g~~l~sgs~d-----g~v~iwd~~ 243 (343)
T 2xzm_R 213 -----ESNVNHLSISPNGKYIATGGKD-----KKLLIWDIL 243 (343)
T ss_dssp -----SSCEEEEEECTTSSEEEEEETT-----CEEEEEESS
T ss_pred -----cccceEEEECCCCCEEEEEcCC-----CeEEEEECC
Confidence 1112233444555677888754 457888874
No 286
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=46.60 E-value=17 Score=39.80 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=46.8
Q ss_pred cCCCChh-hHHHHhhheeeeeeCCCCCCC----------CC-CCCh-hhhHhH-----HHhhcC----CCCCHHHHHHHH
Q 008260 37 TSKFSND-SALLLYALYQQATVGPCNVPK----------PS-SWSP-VEQSKW-----KSWQGL----GNMATTEAMRLF 94 (572)
Q Consensus 37 ~~~~~~~-~~l~lY~l~kQat~G~~~~~~----------p~-~~~~-~~~~k~-----~aW~~~----~~~~~~~a~~~y 94 (572)
.-..+.| +.++|=||.-||..||++... |. ...- ....+| .+|+++ +||++++|+.+|
T Consensus 385 rlpc~~E~~a~~LAAl~~Qae~Gd~~~~~~~~~~L~~~lP~~~l~~~~~~~~w~~~I~~~hkk~~~~~~g~s~~eAk~~y 464 (655)
T 3pvl_A 385 EYRCEKEDDLAELASQQYFVDYGSEMILERLLSLVPTYIPDREITPLKNLEKWAQLAIAAHKKGIYAQRRTDSQKVKEDV 464 (655)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSCGGGCCSSSCHHHHHHHHHHHHHHHHHTTCSSCHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhCCHHHHhccCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHH
Confidence 3345544 899999999999999985321 21 1111 112233 567777 999999999999
Q ss_pred HHHHHHhCCCcc
Q 008260 95 VKILEEEDPGWY 106 (572)
Q Consensus 95 i~~~~~~~p~~~ 106 (572)
++++.+-.|.|.
T Consensus 465 L~~a~~~lp~YG 476 (655)
T 3pvl_A 465 VNYARFKWPLLF 476 (655)
T ss_dssp HHHHHHHCTTTS
T ss_pred HHHHHHhccccC
Confidence 999944445543
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=45.99 E-value=3.5e+02 Score=30.01 Aligned_cols=133 Identities=8% Similarity=0.036 Sum_probs=74.4
Q ss_pred eCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECC
Q 008260 254 WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLE 331 (572)
Q Consensus 254 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~ 331 (572)
.+++||+.-.. ...|+++++....-+.+... .+..| .+.++. ++.||+.--. ....|++++++
T Consensus 481 ~~~~LY~tD~~------~~~I~v~~ldG~~~~~l~~~-~l~~P---~gIaVDp~~g~LYwtD~g-----~~~~I~~~~~d 545 (791)
T 3m0c_C 481 IHSNIYWTDSV------LGTVSVADTKGVKRKTLFRE-NGSKP---RAIVVDPVHGFMYWTDWG-----TPAKIKKGGLN 545 (791)
T ss_dssp TTTEEEEEETT------TTEEEEEETTSSSEEEEEEC-TTCCE---EEEEEETTTTEEEEEECS-----SSCEEEEEETT
T ss_pred cCCcEEEEecC------CCeEEEEeCCCCeEEEEEeC-CCCCc---ceEEEecCCCCEEEecCC-----CCCeEEEEecC
Confidence 46799998533 34799999987766555422 22222 234443 5799987521 12569999988
Q ss_pred CCcEEEeeCCCCCCCcccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCcE-EeeccCCCCCCCccccEEEEECC
Q 008260 332 TMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTMEW-SRPTQQGEIPTPRAGHAGVTIGE 409 (572)
Q Consensus 332 t~~W~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W-~~v~~~g~~p~~R~~~~~~~~~~ 409 (572)
...-..+...+ ...| .+.++- .++.||+.-.. .+.|+++|+....- ..+...+.++.| .++++.++
T Consensus 546 G~~~~~lv~~~-l~~P---~GLavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~v~~~~~~l~~P---~glav~~~ 613 (791)
T 3m0c_C 546 GVDIYSLVTEN-IQWP---NGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHP---FSLAVFED 613 (791)
T ss_dssp SCCEEEEECSS-CSCE---EEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTSSE---EEEEEETT
T ss_pred CCceEEEEeCC-CCCc---eEEEEecCCCeEEEEeCC-----CCcEEEEecCCCceEEEecCCCccCCC---CEEEEeCC
Confidence 76655554321 1111 233333 35789998532 26799999875433 333322223333 46666666
Q ss_pred cccc
Q 008260 410 NWFL 413 (572)
Q Consensus 410 ~~~i 413 (572)
.+|+
T Consensus 614 ~lYw 617 (791)
T 3m0c_C 614 KVFW 617 (791)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 288
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=45.30 E-value=2e+02 Score=27.10 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=53.6
Q ss_pred ceeEEEEECCCCce-EEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCC--C-CCceEEEECCCCcEEEeeCCCCCCC
Q 008260 271 IIQVKVFDLQTCSW-STLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRS--L-LNDLHILDLETMTWDEIDAVGVPPS 346 (572)
Q Consensus 271 ~~~v~~yd~~~~~W-~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~--~-~~~v~~yd~~t~~W~~v~~~g~~p~ 346 (572)
...++++|+.+.+. ..+.. + .....+...+.|++.+..+.... . ...++.+| +.+++.+.. .
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~----~- 216 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK----P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE----K- 216 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE----E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE----E-
T ss_pred cceEEEEECCCCeEEeeecC----C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEecc----C-
Confidence 46799999998887 66642 2 23344444444555554432211 2 34788888 667776642 1
Q ss_pred cccceEEEEEcCCEEEEEeCCCC--CcCcCcEEEEECCCCcEEee
Q 008260 347 PRSDHAAAVHAERYLLIFGGGSH--AACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 347 ~R~~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~t~~W~~v 389 (572)
.......-+++.|++.+.... ......++.+| +.++..+
T Consensus 217 --~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l 257 (347)
T 2gop_A 217 --VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI 257 (347)
T ss_dssp --ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES
T ss_pred --cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEec
Confidence 112222333443444432211 11235799999 6666665
No 289
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=44.80 E-value=1.9e+02 Score=26.57 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=38.2
Q ss_pred cCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe----eccCCCCCC------CccccEEEEECCccccceeeeeeccCCCC
Q 008260 357 AERYLLIFGGGSHAACFNDLHVLDLQTMEWSR----PTQQGEIPT------PRAGHAGVTIGENWFLGLSLVVSSYSGED 426 (572)
Q Consensus 357 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~----v~~~g~~p~------~R~~~~~~~~~~~~~iG~s~~~~~~~g~~ 426 (572)
.++++|+|-| +..|+||..+.+... +.. ..|. +..-.++..... .+
T Consensus 126 ~~gk~yfFkG-------~~yw~~d~~~~~~~~gPk~I~~--~fpg~~~~~f~~~iDAAf~~~~---------------~g 181 (225)
T 3oyo_A 126 KGKEVYLFKG-------NKYVRIAYDSKQLVGNIRNIGD--GFPVLNGTEFESGIDACFASHK---------------EP 181 (225)
T ss_dssp STTEEEEEET-------TEEEEEETTTTEEEEEEEEHHH--HCGGGTTSTTTTCCSEEEECSS---------------TT
T ss_pred CCCcEEEEeC-------CeEEEEECCCCeecCCCcchhh--cCCCcccccCCCCcCEEEEeCC---------------CC
Confidence 4578999988 679999977665443 110 0221 222233444322 33
Q ss_pred EEEEEcCCCCCccCcEEEEeCC
Q 008260 427 VIVAFGGYNGRYNNEVHVLKPS 448 (572)
Q Consensus 427 ~l~v~GG~~~~~~~dv~~yd~~ 448 (572)
++|+|-| +..|+||..
T Consensus 182 ~~YfFkG------~~ywr~d~~ 197 (225)
T 3oyo_A 182 EAYLFKG------QNYVRIDFT 197 (225)
T ss_dssp EEEEEET------TEEEEEECC
T ss_pred EEEEEEC------CEEEEEeCC
Confidence 8999988 678999986
No 290
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=44.56 E-value=3e+02 Score=28.88 Aligned_cols=112 Identities=9% Similarity=0.104 Sum_probs=59.6
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCC---CCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEEC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKP---PVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDL 330 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~---p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~ 330 (572)
++++++.||.+. .+.+||..+.+-...-..... .....-.+++.. +++.++.|+.+ +.+.++|+
T Consensus 201 dg~~las~s~D~------~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D------~~v~lWd~ 268 (611)
T 1nr0_A 201 DGSLFASTGGDG------TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD------KTIKIWNV 268 (611)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT------SEEEEEET
T ss_pred CCCEEEEEECCC------cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC------CeEEEEeC
Confidence 677888888764 488899877654332110000 011111123332 56677777754 35888999
Q ss_pred CCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcE
Q 008260 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (572)
Q Consensus 331 ~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W 386 (572)
.+.+....-..+ .........+...++ .++.++.+ ..+..+|+.+.+-
T Consensus 269 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~l~s~s~d-----~~i~~~~~~~~~~ 316 (611)
T 1nr0_A 269 ATLKVEKTIPVG--TRIEDQQLGIIWTKQ-ALVSISAN-----GFINFVNPELGSI 316 (611)
T ss_dssp TTTEEEEEEECC--SSGGGCEEEEEECSS-CEEEEETT-----CCEEEEETTTTEE
T ss_pred CCCceeeeecCC--CCccceeEEEEEcCC-EEEEEeCC-----CcEEEEeCCCCCc
Confidence 887765433221 111122233334444 56666544 3577888877653
No 291
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=43.32 E-value=2.9e+02 Score=28.32 Aligned_cols=111 Identities=10% Similarity=0.043 Sum_probs=56.3
Q ss_pred eEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccC---CCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCc
Q 008260 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY---GKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLND 324 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~---g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 324 (572)
+++.+++.+|+|-|. .+|+++.....+...... ..+|.. --++... ++++|+|=|. .
T Consensus 267 Ai~~~~ge~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~Wp~LP~~--iDAa~~~~~~g~~~fFKg~--------~ 328 (450)
T 1su3_A 267 AITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPNG--LEAAYEFADRDEVRFFKGN--------K 328 (450)
T ss_dssp EEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCSS--CCEEEEEGGGTEEEEEETT--------E
T ss_pred eEEecCCeEEEEeCC--------EEEEEcCCCCcccceehhHhccCCCCC--eeEEEEEcCCCeEEEEeCC--------E
Confidence 455679999999875 355555443332211100 022322 1233333 6899998653 4
Q ss_pred eEEEECCCC--cE-EEee-CCCCCCCcccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 325 LHILDLETM--TW-DEID-AVGVPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 325 v~~yd~~t~--~W-~~v~-~~g~~p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
+|+|+..+. .+ ..+. ..|-+..+..--++... .++++|+|=| +..|+||..+.+
T Consensus 329 ~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~ 387 (450)
T 1su3_A 329 YWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRS 387 (450)
T ss_dssp EEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTE
T ss_pred EEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCcc
Confidence 677763211 00 1111 11211122222233333 3578999988 679999987543
No 292
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=43.06 E-value=2.2e+02 Score=26.88 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=69.8
Q ss_pred cceeEEEECCEEEEEccCCCCcccCcEEEEEcC--CCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEecc
Q 008260 187 YEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLR--SWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGH 264 (572)
Q Consensus 187 ~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~ 264 (572)
..|++++-+++||.+|-...++.-- |. ......+.. -..|+++..++.||.+|-.
T Consensus 72 ~~hs~~l~~G~v~~wG~n~~Gqlg~------P~~~~~~v~~ia~-----------------G~~hs~al~~G~v~~wG~n 128 (282)
T 3qhy_B 72 NYHSLALKDGEVIAWGGNEDGQTTV------PAEARSGVDAIAA-----------------GAWASYALKDGKVIAWGDD 128 (282)
T ss_dssp SSEEEEEETTEEEEEECCTTSTTCC------CGGGSSSEEEEEE-----------------ETTEEEEEETTEEEEEECC
T ss_pred CCEEEEEECCEEEEeeCCCCCCCCC------CcccCCCeEEEEC-----------------cCCEEEEEeCCeEEEecCC
Confidence 4477777789999999744332100 00 112333332 1345555559999999854
Q ss_pred CCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCC
Q 008260 265 TKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP 344 (572)
Q Consensus 265 ~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~ 344 (572)
... .. . + -.........+.. -..|++++.++++|.+|--.....-... ........+.
T Consensus 129 ~~g-ql-g-~--~~~~~~~i~~i~~-------G~~~~~~l~~G~v~~wG~n~~gqlg~p~-----~~~~~v~~i~----- 186 (282)
T 3qhy_B 129 SDG-QT-T-V--PAEAQSGVTALDG-------GVYTALAVKNGGVIAWGDNYFGQTTVPA-----EAQSGVDDVA----- 186 (282)
T ss_dssp TTS-TT-S-C--CGGGGSSEEEEEE-------CSSEEEEEETTEEEEEECCTTSTTSCCG-----GGGSSEEEEE-----
T ss_pred CCC-cC-C-C--CccCCCCeEEEEc-------ccCEEEEEECCEEEEecCCCCCCCCCce-----ecCCCeEEEE-----
Confidence 322 11 0 0 0001122334432 2356777678999999864322110000 0012344443
Q ss_pred CCcccceEEEEEcCCEEEEEeCCCC
Q 008260 345 PSPRSDHAAAVHAERYLLIFGGGSH 369 (572)
Q Consensus 345 p~~R~~~~~~~~~~~~lyv~GG~~~ 369 (572)
.-..|++++ .++.+|.+|-...
T Consensus 187 --~G~~hs~al-~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 187 --GGIFHSLAL-KDGKVIAWGDNRY 208 (282)
T ss_dssp --ECSSEEEEE-ETTEEEEEECCTT
T ss_pred --ecCCEEEEE-ECCeEEEEECCCC
Confidence 234677777 7888999996543
No 293
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=42.33 E-value=2.7e+02 Score=27.64 Aligned_cols=111 Identities=11% Similarity=0.076 Sum_probs=56.5
Q ss_pred eEEEeCCEEEEEeccCCCCCcceeEEEEECCCCce--EEeccC-CCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCc
Q 008260 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSW--STLKTY-GKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLND 324 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~~~-g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 324 (572)
+++.+++++|+|=|. .+|+++.....- ..+... ..+|. ... ++... ++++|+|=|. .
T Consensus 185 Av~~~~g~~~fFkg~--------~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iD-Aa~~~~~~g~~~fFkg~--------~ 246 (365)
T 3ba0_A 185 AVTTVGNKIFFFKDR--------FFWLKVSERPKTSVNLISSLWPTLPS-GIE-AAYEIEARNQVFLFKDD--------K 246 (365)
T ss_dssp CEEEETTEEEEEETT--------EEEECCSSCCCCCEEEHHHHCSSCCS-SCC-EEEEEGGGTEEEEEETT--------E
T ss_pred eEEEcCCeEEEEeCC--------EEEEEcCCCccCCccchhhhccCCCC-Ccc-EEEEecCCCEEEEEeCC--------E
Confidence 345579999999774 355655433211 111110 02332 222 33333 7899999662 3
Q ss_pred eEEEECCCCc--E-EEeeCCCCCCCcccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 325 LHILDLETMT--W-DEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 325 v~~yd~~t~~--W-~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
.|+|+..... + ..+...|-+..+..--++... .++++|+|=| +..|+||..+.+
T Consensus 247 yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG-------~~yw~yd~~~~~ 304 (365)
T 3ba0_A 247 YWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD-------NQYWRYDERRQM 304 (365)
T ss_dssp EEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTE
T ss_pred EEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCCcce
Confidence 5666533211 1 123222212222222344433 3468999988 679999987654
No 294
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=42.22 E-value=2.3e+02 Score=26.75 Aligned_cols=147 Identities=16% Similarity=0.167 Sum_probs=77.3
Q ss_pred cccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceEE
Q 008260 208 RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWST 286 (572)
Q Consensus 208 ~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 286 (572)
.....++++|+.+.+-..+.. ....... +++.+++...... .....++++|+.+.+...
T Consensus 40 ~~~~~l~~~d~~~~~~~~l~~-------------------~~~~~~SpDg~~la~~~~~~~-~~~~~l~~~~~~~g~~~~ 99 (347)
T 2gop_A 40 KYENTIVIENLKNNARRFIEN-------------------ATMPRISPDGKKIAFMRANEE-KKVSEIWVADLETLSSKK 99 (347)
T ss_dssp EEEEEEEEEETTTCCEEEEES-------------------CEEEEECTTSSEEEEEEEETT-TTEEEEEEEETTTTEEEE
T ss_pred CccceEEEEeCCCCceEEccc-------------------CCCeEECCCCCEEEEEEeccC-CCcceEEEEECCCCceEE
Confidence 345689999998876555410 0111222 4443334333221 234579999998888777
Q ss_pred eccCCCCCCCCcceEEEEE-CC-EEEEEecC-----------------CCCC---CCCCceEEEECCCCcE-EEeeCCCC
Q 008260 287 LKTYGKPPVSRGGQSVTLV-GT-SLVIFGGE-----------------DAKR---SLLNDLHILDLETMTW-DEIDAVGV 343 (572)
Q Consensus 287 ~~~~g~~p~~R~~~~~~~~-~~-~iyv~GG~-----------------~~~~---~~~~~v~~yd~~t~~W-~~v~~~g~ 343 (572)
+... +. ....... ++ .|++.... ++.. .....++++|+.+.+. ..+..
T Consensus 100 l~~~---~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--- 170 (347)
T 2gop_A 100 ILEA---KN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--- 170 (347)
T ss_dssp EEEE---SE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE---
T ss_pred EEcC---CC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC---
Confidence 6532 11 2222222 44 45444321 0000 0135699999998877 55542
Q ss_pred CCCcccceEEEEEcCCEEEEEeCCCCCc---C-cCcEEEEECCCCcEEeec
Q 008260 344 PPSPRSDHAAAVHAERYLLIFGGGSHAA---C-FNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 344 ~p~~R~~~~~~~~~~~~lyv~GG~~~~~---~-~~~v~~yd~~t~~W~~v~ 390 (572)
+ .....+...++ +++.+...... . ...+|.+| +.++..+.
T Consensus 171 ---~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 214 (347)
T 2gop_A 171 ---P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMF 214 (347)
T ss_dssp ---E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEE
T ss_pred ---C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEec
Confidence 1 33344555666 66555433221 2 45789999 66777664
No 295
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=41.44 E-value=2.7e+02 Score=27.46 Aligned_cols=155 Identities=10% Similarity=0.043 Sum_probs=86.5
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCC
Q 008260 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (572)
Q Consensus 189 ~s~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 266 (572)
.+++.. ++.||+.-- ....++++++.......+.... ...| .+.++-..++.||+.-..
T Consensus 119 ~gl~~d~~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~-----------~~~p-~glavd~~~g~lY~~d~~-- 179 (386)
T 3v65_B 119 IALDFHHRRELVFWSDV-----TLDRILRANLNGSNVEEVVSTG-----------LESP-GGLAVDWVHDKLYWTDSG-- 179 (386)
T ss_dssp EEEEEETTTTEEEEEET-----TTTEEEEEETTSCCEEEEECSS-----------CSCC-CCEEEETTTTEEEEEETT--
T ss_pred EEEEEecCCCeEEEEeC-----CCCcEEEEecCCCCcEEEEeCC-----------CCCc-cEEEEEeCCCeEEEEcCC--
Confidence 444444 578998743 1246999999887765553321 0011 222222247899988543
Q ss_pred CCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCC
Q 008260 267 DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP 344 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~ 344 (572)
...|+++++....-..+... .+..| ...++. ++.||+.--.. ...|++++++...-+.+...+
T Consensus 180 ----~~~I~~~~~dg~~~~~l~~~-~l~~P---~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~~-- 244 (386)
T 3v65_B 180 ----TSRIEVANLDGAHRKVLLWQ-SLEKP---RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIADTH-- 244 (386)
T ss_dssp ----TTEEEECBTTSCSCEEEECS-SCSCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEECSS--
T ss_pred ----CCeEEEEeCCCCceEEeecC-CCCCC---cEEEEEcCCCeEEEeccCC-----CCEEEEEeCCCCCcEEEEECC--
Confidence 23688888876544444321 12222 234444 67899874221 356999998865544443221
Q ss_pred CCcccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 345 PSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 345 p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
...-.+.++- .++.||+.-.. .+.|+++|+...
T Consensus 245 --~~~PnGlavd~~~~~lY~aD~~-----~~~I~~~d~dG~ 278 (386)
T 3v65_B 245 --LFWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGS 278 (386)
T ss_dssp --CSCEEEEEEEGGGTEEEEEETT-----TTEEEEECTTSC
T ss_pred --CCCeeeEEEeCCCCEEEEEECC-----CCEEEEEeCCCC
Confidence 1112344443 46679997543 257999998753
No 296
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=41.35 E-value=2.6e+02 Score=27.18 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=41.0
Q ss_pred cCCEEEEEeCCC-----CCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEE
Q 008260 357 AERYLLIFGGGS-----HAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAF 431 (572)
Q Consensus 357 ~~~~lyv~GG~~-----~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~ 431 (572)
.++++|+....+ ....-+.++++|+++.+-..- ++... -++++...+ ..+||+.
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~-----i~~~~-p~~ia~spd---------------g~~l~v~ 322 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR-----IPGRD-ALSMTIDQQ---------------RNLMLTL 322 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE-----EECTT-CCEEEEETT---------------TTEEEEE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE-----EecCC-eeEEEECCC---------------CCEEEEe
Confidence 347899875411 111235799999998764332 22333 455666554 3377775
Q ss_pred cCCCCCccCcEEEEeCCCC
Q 008260 432 GGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 432 GG~~~~~~~dv~~yd~~~~ 450 (572)
++ +.|.+||..+.
T Consensus 323 n~------~~v~v~D~~t~ 335 (361)
T 2oiz_A 323 DG------GNVNVYDISQP 335 (361)
T ss_dssp CS------SCEEEEECSSS
T ss_pred CC------CeEEEEECCCC
Confidence 52 78999998775
No 297
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=40.78 E-value=1.8e+02 Score=31.56 Aligned_cols=69 Identities=9% Similarity=-0.015 Sum_probs=34.8
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcce-eEEEeCCEEEEEeccCCC---CCcceeEEEEECCCCceEE
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGH-SLIPWENKLLSIAGHTKD---PSEIIQVKVFDLQTCSWST 286 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~h-s~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~ 286 (572)
..++.||+.+++=..+-.... ......... -...-+++..+++..... .....++++||+.+.+-..
T Consensus 36 ~~i~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~ 106 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFLENST---------FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT 106 (740)
T ss_dssp TEEEEEETTTCCEEEEECTTT---------TTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred CcEEEEECCCCceEEEEechh---------hhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE
Confidence 368999998877444322110 000000010 111225554455443211 1334688999999988666
Q ss_pred ec
Q 008260 287 LK 288 (572)
Q Consensus 287 ~~ 288 (572)
+.
T Consensus 107 l~ 108 (740)
T 4a5s_A 107 EE 108 (740)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 298
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=40.77 E-value=2.2e+02 Score=26.14 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=58.0
Q ss_pred eCCEEEEEeccCCCCCcceeEEEEECCC----CceEE----ecc-CCCCCCC--C-cceEEEEE--CCEEEEEecCCCCC
Q 008260 254 WENKLLSIAGHTKDPSEIIQVKVFDLQT----CSWST----LKT-YGKPPVS--R-GGQSVTLV--GTSLVIFGGEDAKR 319 (572)
Q Consensus 254 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~----~~W~~----~~~-~g~~p~~--R-~~~~~~~~--~~~iyv~GG~~~~~ 319 (572)
.++++|+|-|. .+|+||..+ +.... +.. -..+|.. . .--++... ++++|+|-|
T Consensus 69 ~~g~~~fFkg~--------~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG----- 135 (225)
T 3oyo_A 69 EASEAYVFSGN--------HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG----- 135 (225)
T ss_dssp STTEEEEEETT--------EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET-----
T ss_pred CCCeEEEEcCC--------EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC-----
Confidence 58999999874 578887532 22111 110 0012221 0 11123232 689999976
Q ss_pred CCCCceEEEECCCCcEEEee-CCC-CCCC------cccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECC
Q 008260 320 SLLNDLHILDLETMTWDEID-AVG-VPPS------PRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQ 382 (572)
Q Consensus 320 ~~~~~v~~yd~~t~~W~~v~-~~g-~~p~------~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~ 382 (572)
+..|+||..+.+...-+ ... ..|. +..-.++... .++++|+|=| +..|+||..
T Consensus 136 ---~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~ywr~d~~ 197 (225)
T 3oyo_A 136 ---NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNYVRIDFT 197 (225)
T ss_dssp ---TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEECC
T ss_pred ---CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCC
Confidence 35899997666544310 000 0111 3333344443 4678999988 678999987
No 299
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=40.58 E-value=3e+02 Score=27.70 Aligned_cols=145 Identities=9% Similarity=0.099 Sum_probs=77.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeC-CEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWE-NKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~-~~iyv~GG~~~~~~~~~~ 273 (572)
++.||+.--. ..+.+||+.++....+... ..+-.+-++..+ +.||+...... .....
T Consensus 149 ~g~Lyv~d~~------~~I~~id~~~~~v~~~~~~--------------~~~P~~ia~d~~G~~lyvad~~~~--~~~~~ 206 (430)
T 3tc9_A 149 HNHLYLVGEQ------HPTRLIDFEKEYVSTVYSG--------------LSKVRTICWTHEADSMIITNDQNN--NDRPN 206 (430)
T ss_dssp EEEEEEEEBT------EEEEEEETTTTEEEEEECC--------------CSCEEEEEECTTSSEEEEEECCSC--TTSEE
T ss_pred CCeEEEEeCC------CcEEEEECCCCEEEEEecC--------------CCCcceEEEeCCCCEEEEEeCCCC--cccce
Confidence 4778988531 6799999999888776431 112122222223 45888865432 22334
Q ss_pred EEEEECCCCceE---EeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcc
Q 008260 274 VKVFDLQTCSWS---TLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPR 348 (572)
Q Consensus 274 v~~yd~~~~~W~---~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R 348 (572)
+..++... .|. .+.. -..-+.+++. ++.||+.--. .+.+++||+++..-..+...+....|
T Consensus 207 v~~~~~~g-~~~~~~~l~~------~~~p~giavdp~~g~lyv~d~~------~~~V~~~~~~~~~~~~~~~~~~~~~P- 272 (430)
T 3tc9_A 207 NYILTRES-GFKVITELTK------GQNCNGAETHPINGELYFNSWN------AGQVFRYDFTTQETTPLFTIQDSGWE- 272 (430)
T ss_dssp EEEEEGGG-TSCSEEEEEE------CSSCCCEEECTTTCCEEEEETT------TTEEEEEETTTTEEEEEEECSSSSCC-
T ss_pred EEEEeCCC-ceeeeeeecc------CCCceEEEEeCCCCEEEEEECC------CCEEEEEECCCCcEEEEEEcCCCCcc-
Confidence 66666532 232 2221 1222444554 5688886432 35699999987765444333111112
Q ss_pred cceEEEEEcC-CEEEEEeCCCCCcCcCcEEEEECC
Q 008260 349 SDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQ 382 (572)
Q Consensus 349 ~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~ 382 (572)
...++..+ ++||+.--.+ +.|++||..
T Consensus 273 --~gia~~pdG~~lyv~d~~~-----~~I~~~~~d 300 (430)
T 3tc9_A 273 --FHIQFHPSGNYAYIVVVNQ-----HYILRSDYD 300 (430)
T ss_dssp --EEEEECTTSSEEEEEETTT-----TEEEEEEEE
T ss_pred --eeEEEcCCCCEEEEEECCC-----CEEEEEeCC
Confidence 23444433 4588875322 567777654
No 300
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=38.93 E-value=2.9e+02 Score=27.02 Aligned_cols=194 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCc------------EEEeeecccccCCCCCCCCCCC----------CCcceeEE
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWA------------WSKIQAKAVAESTESPSPALLT----------PCAGHSLI 252 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~------------W~~~~~~~~~~~~~~~~~~~p~----------~R~~hs~~ 252 (572)
++.+++.|| .-..+.+||..+.. ...+.... +. ........
T Consensus 39 ~g~~la~g~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~~~~~~~~~~~~~V~~l~~ 101 (447)
T 3dw8_B 39 SGELLATGD-----KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHE------------PEFDYLKSLEIEEKINKIRW 101 (447)
T ss_dssp SSSEEEEEE-----TTSEEEEEEECC-----CCCCCCEEEEEEEECCC------------CEEEGGGTEEECCCCCEEEE
T ss_pred CCCEEEEEc-----CCCeEEEEEecCCCCCCcccccceeEeccccccc------------ccccccccccccCceEEEEE
Q ss_pred EeCC--EEEEEeccCCCCCcceeEEEEECCCCceE----------------------------------------EeccC
Q 008260 253 PWEN--KLLSIAGHTKDPSEIIQVKVFDLQTCSWS----------------------------------------TLKTY 290 (572)
Q Consensus 253 ~~~~--~iyv~GG~~~~~~~~~~v~~yd~~~~~W~----------------------------------------~~~~~ 290 (572)
.-++ ..++.|+.+.. |.+||..+..-. .+.
T Consensus 102 ~~~~~~~~l~s~s~d~~------i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 173 (447)
T 3dw8_B 102 LPQKNAAQFLLSTNDKT------IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA-- 173 (447)
T ss_dssp CCCCSSSEEEEEECSSC------EEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC--
T ss_pred cCCCCcceEEEeCCCCe------EEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec--
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECC--CCcEEEe-----eCCCCCCCcccceEEEEEcCC-EEE
Q 008260 291 GKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLE--TMTWDEI-----DAVGVPPSPRSDHAAAVHAER-YLL 362 (572)
Q Consensus 291 g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~--t~~W~~v-----~~~g~~p~~R~~~~~~~~~~~-~ly 362 (572)
..........+..-++++++.| .++. +.+||+. ...+..+ ... .....-.+++...++ .++
T Consensus 174 -~~h~~~v~~~~~~~~~~~l~s~-~d~~------i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l 242 (447)
T 3dw8_B 174 -NAHTYHINSISINSDYETYLSA-DDLR------INLWHLEITDRSFNIVDIKPANME---ELTEVITAAEFHPNSCNTF 242 (447)
T ss_dssp -SCCSSCCCEEEECTTSSEEEEE-CSSE------EEEEETTEEEEEEEEEECCCSSGG---GCCCCEEEEEECSSCTTEE
T ss_pred -cCCCcceEEEEEcCCCCEEEEe-CCCe------EEEEECCCCCceeeeeeccccccc---ccCcceEEEEECCCCCcEE
Q ss_pred EEeCCCCCcCcCcEEEEECCCCcE----EeeccCCCCCCCcc-------ccEEEEECCccccceeeeeeccCCCCEEEEE
Q 008260 363 IFGGGSHAACFNDLHVLDLQTMEW----SRPTQQGEIPTPRA-------GHAGVTIGENWFLGLSLVVSSYSGEDVIVAF 431 (572)
Q Consensus 363 v~GG~~~~~~~~~v~~yd~~t~~W----~~v~~~g~~p~~R~-------~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~ 431 (572)
+.|+.+ ..+.+||+.+.+. ...-....-+..+. ....+.+.. .+.+++.
T Consensus 243 ~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---------------~g~~l~~ 302 (447)
T 3dw8_B 243 VYSSSK-----GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH---------------SGRYMMT 302 (447)
T ss_dssp EEEETT-----SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT---------------TSSEEEE
T ss_pred EEEeCC-----CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC---------------CCCEEEE
Q ss_pred cCCCCCccCcEEEEeCCC
Q 008260 432 GGYNGRYNNEVHVLKPSH 449 (572)
Q Consensus 432 GG~~~~~~~dv~~yd~~~ 449 (572)
|+. +. |.+||+.+
T Consensus 303 ~~~-~~----v~iwd~~~ 315 (447)
T 3dw8_B 303 RDY-LS----VKVWDLNM 315 (447)
T ss_dssp EES-SE----EEEEETTC
T ss_pred eeC-Ce----EEEEeCCC
No 301
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=38.20 E-value=1.9e+02 Score=29.46 Aligned_cols=122 Identities=16% Similarity=0.097 Sum_probs=64.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccC---CCCCcc
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHT---KDPSEI 271 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~---~~~~~~ 271 (572)
++++||.-....... +.+.++|+.+++-...-+.. ..| +.++..-+.++|+.--.. ..+...
T Consensus 84 ~~~vyV~n~~~~~~~-~~VsVID~~t~~vv~~I~vG------------~~P--gia~SpDgk~lyVan~~~~~~~~G~~~ 148 (426)
T 3c75_H 84 ARRVYIQDPAHFAAI-TQQFVIDGSTGRILGMTDGG------------FLP--HPVAAEDGSFFAQASTVFERIARGKRT 148 (426)
T ss_dssp TTEEEEEECTTTCSS-EEEEEEETTTTEEEEEEEEC------------SSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCEEEEECCCcCCCC-CeEEEEECCCCEEEEEEECC------------CCC--ceEECCCCCEEEEEeccccccccCCCC
Confidence 467888755221111 78999999987655433222 122 222212245688774210 011234
Q ss_pred eeEEEEECCCCceEE-eccCCCCC--CCCcceEEEE--ECCEEEEEecCCCCCCCCCceEEEECCCCcEE
Q 008260 272 IQVKVFDLQTCSWST-LKTYGKPP--VSRGGQSVTL--VGTSLVIFGGEDAKRSLLNDLHILDLETMTWD 336 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~-~~~~g~~p--~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~ 336 (572)
+.|.++|+.+.+-.. +...+... ....-+.+++ .++++||..-. ..+.+.++|+.+.+-.
T Consensus 149 ~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~-----~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 149 DYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS-----PAPAVGVVDLEGKTFD 213 (426)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS-----SSCEEEEEETTTTEEE
T ss_pred CEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC-----CCCeEEEEECCCCeEE
Confidence 689999999976433 32210000 0112233344 35688887321 1467999999887653
No 302
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=38.07 E-value=3e+02 Score=27.02 Aligned_cols=73 Identities=8% Similarity=0.012 Sum_probs=41.5
Q ss_pred cCCEEEEEeCCC----CCcCcCcEEEEECCCCcE-EeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEE
Q 008260 357 AERYLLIFGGGS----HAACFNDLHVLDLQTMEW-SRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAF 431 (572)
Q Consensus 357 ~~~~lyv~GG~~----~~~~~~~v~~yd~~t~~W-~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~ 431 (572)
.++++|+..... +...-++|+++|+.+.+- ..++ .+...++++...+ |+..+|+.
T Consensus 277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~------~g~~p~~i~~s~D--------------g~~~l~v~ 336 (373)
T 2mad_H 277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS------LGHDVDAISVAQD--------------GGPDLYAL 336 (373)
T ss_pred CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE------CCCCcCeEEECCC--------------CCeEEEEE
Confidence 346789875421 111236899999988765 3332 3333355555443 12145554
Q ss_pred cCCCCCccCcEEEEeCCCCccc
Q 008260 432 GGYNGRYNNEVHVLKPSHKSTL 453 (572)
Q Consensus 432 GG~~~~~~~dv~~yd~~~~~~~ 453 (572)
.+. .++|.++|..+.+-.
T Consensus 337 ~~~----~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 337 SAG----TEVLHIYDAGAGDQD 354 (373)
T ss_pred cCC----CCeEEEEECCCCCEE
Confidence 422 267999998876543
No 303
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=37.27 E-value=1.8e+02 Score=31.34 Aligned_cols=111 Identities=15% Similarity=0.228 Sum_probs=55.4
Q ss_pred eEEEeCCEEEEEeccCCCCCcceeEEEEECCCC-ceE--EeccC-CCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCC
Q 008260 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTC-SWS--TLKTY-GKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLN 323 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~-~W~--~~~~~-g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~ 323 (572)
+++..++.+|+|-|. .+|+++.... ... .+... ..+|.. .. ++... ++++|+|=| +
T Consensus 448 Ait~~rg~~yfFKg~--------~yWr~~~~~~~~~~P~~Is~~wp~LP~~-ID-AA~~~~~~~k~yFFkG--------~ 509 (631)
T 1ck7_A 448 GIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPEK-ID-AVYEAPQEEKAVFFAG--------N 509 (631)
T ss_dssp EEEECSSSEEEECSS--------EEEEESCTTSCCEEEEEGGGTCTTSCSS-CS-BCCEETTTTEEEEEET--------T
T ss_pred eeEecCCcEEEEcCC--------EEEEEcCCCCCCCCceeccccCCCCCcc-ce-EEEEECCCCEEEEEec--------C
Confidence 445568899999774 4677665432 111 11110 022321 22 23332 578999965 3
Q ss_pred ceEEEECCCC--cE-EEeeCCCCCCCcccceEEEE-EcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 324 DLHILDLETM--TW-DEIDAVGVPPSPRSDHAAAV-HAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 324 ~v~~yd~~t~--~W-~~v~~~g~~p~~R~~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
..|+|+-.+. .+ +.+...+-+..+..--++.. ..++++|+|=| +..|+||..+++
T Consensus 510 ~yWry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG-------~~ywryd~~~~~ 568 (631)
T 1ck7_A 510 EYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKK 568 (631)
T ss_dssp EEEEEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEET-------TEEEEEETTTTE
T ss_pred EEEEECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEEC-------CEEEEEcCCccc
Confidence 4788874210 00 12222221111111112222 14568999988 679999987653
No 304
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=35.57 E-value=5.7e+02 Score=29.50 Aligned_cols=191 Identities=14% Similarity=0.080 Sum_probs=103.9
Q ss_pred CCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe---CCEEEE
Q 008260 184 KARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW---ENKLLS 260 (572)
Q Consensus 184 ~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~---~~~iyv 260 (572)
..-.|+++....+.+ ++|.-........++.|+.....|..-.... .........+++++.. +...+|
T Consensus 332 ~~q~GfSa~~t~d~~-~~GapG~~~w~G~v~~~~~~~~~~~~~~~~~--------~~~~~~sylGySVa~~~~~g~~~~v 402 (1095)
T 3k6s_A 332 MAQEGFSAVFTPDGP-VLGAVGSFTWSGGAFLYPPNMSPTFINMSQE--------NVDMRDSYLGYSTELALWKGVQSLV 402 (1095)
T ss_dssp BCCTTSSEECCTTCC-EEEESCSTTTTBEEEECCSSSCCEEECCCSS--------CCCCCSCCBTSSEECCCCSSSCEEE
T ss_pred cccccccceecCCcc-eEcccccCCccceeEEecCCCcceeeccccc--------cccccccccceeeEEeccCCceEEE
Confidence 344667777766666 7886433334456788877655443221110 0112234467777653 234567
Q ss_pred EeccCCCCCcceeEEEEECCCCceEEec-cCCCCCCCCcceEEEEEC------CEEEEEecCCC-CCCCCCceEEEECCC
Q 008260 261 IAGHTKDPSEIIQVKVFDLQTCSWSTLK-TYGKPPVSRGGQSVTLVG------TSLVIFGGEDA-KRSLLNDLHILDLET 332 (572)
Q Consensus 261 ~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~g~~p~~R~~~~~~~~~------~~iyv~GG~~~-~~~~~~~v~~yd~~t 332 (572)
+|--.. .....|++|......|.... ..|.-.....++++++.+ .-|+++|.-.. .......+++|....
T Consensus 403 ~GAP~~--~~~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~ 480 (1095)
T 3k6s_A 403 LGAPRY--QHTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPR 480 (1095)
T ss_dssp EEETTG--GGTCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCS
T ss_pred EEcccc--cccceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCC
Confidence 764321 23457899988877887764 234444556677777641 25777774321 011235688886543
Q ss_pred --CcEEEeeCC-CCC--CCcccceEEEEEcC----C--EEEEEeCCCCCcCcCcEEEEECCCC-cE
Q 008260 333 --MTWDEIDAV-GVP--PSPRSDHAAAVHAE----R--YLLIFGGGSHAACFNDLHVLDLQTM-EW 386 (572)
Q Consensus 333 --~~W~~v~~~-g~~--p~~R~~~~~~~~~~----~--~lyv~GG~~~~~~~~~v~~yd~~t~-~W 386 (572)
..|...... +.. +..|++.+.+.++| + -| ++|--........+|+|.-... .|
T Consensus 481 ~~~~~~~~~~l~g~~~~~~~~FG~sva~~gD~NgDG~~Dl-~VGAP~~~~~~G~vyi~~g~~~~g~ 545 (1095)
T 3k6s_A 481 GWRRWWCDAVLYGEQGHPWGRFGAALTVLGDVNGDKLTDV-VIGAPGEEENRGAVYLFHGVLGPSI 545 (1095)
T ss_dssp STTCCCSCSSCCCCCSCSSCCBTSCEEEEECSSSSSCCEE-EEECTTTTTSCCBEEEEEBCSSSCB
T ss_pred CCcceeeeEEeecccCCccccCccceEeecccCCCCCcCE-EEeCCcCCCCCCEEEEecCCCCCCc
Confidence 357644322 211 35678888877532 2 24 4554222333457899887655 45
No 305
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=35.21 E-value=5.2e+02 Score=28.89 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=53.7
Q ss_pred CEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 256 NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 256 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
+++++.|+.+ ..|.++|+.+.+-...-. .+ ....++.+ ++..++.|+.+ ..+.+||+.+.
T Consensus 69 g~~L~S~s~D------~~v~lWd~~~~~~~~~~~---~~---~~V~~v~~sp~g~~l~sgs~d------g~V~lwd~~~~ 130 (902)
T 2oaj_A 69 GIYLVVINAK------DTVYVLSLYSQKVLTTVF---VP---GKITSIDTDASLDWMLIGLQN------GSMIVYDIDRD 130 (902)
T ss_dssp TTEEEEEETT------CEEEEEETTTCSEEEEEE---CS---SCEEEEECCTTCSEEEEEETT------SCEEEEETTTT
T ss_pred CCEEEEEECc------CeEEEEECCCCcEEEEEc---CC---CCEEEEEECCCCCEEEEEcCC------CcEEEEECCCC
Confidence 4545555543 368889988765322211 11 11122222 45566666653 34889998877
Q ss_pred cEEEeeCCC-----CCCCc--ccceEEEEEcC-CEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 334 TWDEIDAVG-----VPPSP--RSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 334 ~W~~v~~~g-----~~p~~--R~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
.-....... ..+.. ..-.+.+...+ ..+++.|+.+ ..+ ++|+.+.+-..
T Consensus 131 ~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d-----g~v-lWd~~~~~~~~ 187 (902)
T 2oaj_A 131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY-----VTL-TYSLVENEIKQ 187 (902)
T ss_dssp EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS-----CEE-EEETTTTEEEE
T ss_pred ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC-----CcE-EEECCCCceEE
Confidence 643211100 00111 11123344432 3467777644 457 89998876543
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=33.40 E-value=1.8e+02 Score=31.75 Aligned_cols=152 Identities=11% Similarity=0.012 Sum_probs=79.9
Q ss_pred ECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE--eCCEEEEEeccCCCCCcc
Q 008260 194 VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP--WENKLLSIAGHTKDPSEI 271 (572)
Q Consensus 194 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~--~~~~iyv~GG~~~~~~~~ 271 (572)
.+++||+.-. ..+.|+++|+....-..+.... ...|+ .+++ .++.||+.--. ..
T Consensus 463 ~~g~LY~tD~-----~~~~I~v~d~dg~~~~~l~~~~-----------~~~P~---giavDp~~g~ly~td~~-----~~ 518 (699)
T 1n7d_A 463 IHSNIYWTDS-----VLGTVSVADTKGVKRKTLFREQ-----------GSKPR---AIVVDPVHGFMYWTDWG-----TP 518 (699)
T ss_dssp SSSBCEECCT-----TTSCEEEEBSSSCCEEEECCCS-----------SCCCC---CEECCSSSSCCEECCCS-----SS
T ss_pred eCCcEEEEec-----cCCeEEEEecCCCceEEEEeCC-----------CCCcc---eEEEccCCCcEEEcccC-----CC
Confidence 3578888632 2346889998776544442211 01121 2222 35778776411 12
Q ss_pred eeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
..|+++++....-+.+... .+. .-.++++. +++||+.-.. .+.|+++|++...-+.+.... .....
T Consensus 519 ~~I~~~~~dG~~~~~l~~~-~l~---~PnGlavd~~~~~LY~aD~~------~~~I~~~d~dG~~~~~~~~~~--~~~~~ 586 (699)
T 1n7d_A 519 AKIKKGGLNGVDIYSLVTE-NIQ---WPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDE--KRLAH 586 (699)
T ss_dssp CCEEBCCSSSCCCCEESCS-SCS---SCCCEEECTTTCCEEEEETT------TTEEEEECSSSSCCEEECCCS--SSCSS
T ss_pred CeEEEEeCCCCCeeEEEeC-CCC---CccEEEEeccCCEEEEEecC------CCeEEEEccCCCceEEEEecC--CcCCC
Confidence 4678877765443333211 111 12234443 6789987532 467999998765444443220 11122
Q ss_pred ceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 350 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
-.++++.. +.||+.-.. .+.|.++|+.+.+-.
T Consensus 587 P~glavd~-~~lywtd~~-----~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 587 PFSLAVFE-DKVFWTDII-----NEAIFSANRLTGSDV 618 (699)
T ss_dssp CCCCEEET-TEEEEECST-----TTCEEEEETTTEEEE
T ss_pred ceEeEEEC-CEEEEEeCC-----CCeEEEEEccCCCce
Confidence 23455554 468887532 257999998765543
No 307
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=32.91 E-value=3.5e+02 Score=26.20 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=86.2
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCC
Q 008260 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (572)
Q Consensus 189 ~s~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 266 (572)
.+++.. ++.||+.-- ....++++++.......+.... ...| .+.++-..++.||+.-..
T Consensus 76 ~~l~~d~~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~-----------~~~p-~glavd~~~g~ly~~d~~-- 136 (349)
T 3v64_C 76 IALDFHHRRELVFWSDV-----TLDRILRANLNGSNVEEVVSTG-----------LESP-GGLAVDWVHDKLYWTDSG-- 136 (349)
T ss_dssp EEEEEETTTTEEEEEET-----TTTEEEEEETTSCSCEEEECSS-----------CSCC-CEEEEETTTTEEEEEETT--
T ss_pred EEEEEeccccEEEEEec-----cCCceEEEecCCCCceEEEeCC-----------CCCc-cEEEEecCCCeEEEEcCC--
Confidence 344443 578998743 1246899999877655543221 0011 222222247899988543
Q ss_pred CCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCC
Q 008260 267 DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP 344 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~ 344 (572)
...|+++++....-..+... .+..| ...++. ++.||+.--.. ...|++++++...-+.+...
T Consensus 137 ----~~~I~~~~~dG~~~~~l~~~-~l~~P---~~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~--- 200 (349)
T 3v64_C 137 ----TSRIEVANLDGAHRKVLLWQ-SLEKP---RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIADT--- 200 (349)
T ss_dssp ----TTEEEEEETTSCSCEEEECT-TCSCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEESCCS---
T ss_pred ----CCeEEEEcCCCCceEEEEeC-CCCCc---ceEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEEEEC---
Confidence 24788999876554444321 12222 234444 67899875321 35699999886554444221
Q ss_pred CCcccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 345 PSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 345 p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
.-..-.+.++- .++.||+.-.. .+.|+++|+...
T Consensus 201 -~~~~PnGla~d~~~~~lY~aD~~-----~~~I~~~~~dG~ 235 (349)
T 3v64_C 201 -HLFWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGS 235 (349)
T ss_dssp -SCSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSC
T ss_pred -CCCCcceEEEeCCCCEEEEEECC-----CCEEEEEeCCCC
Confidence 11112344444 46789997542 257999998754
No 308
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=32.33 E-value=3.2e+02 Score=29.11 Aligned_cols=64 Identities=16% Similarity=0.021 Sum_probs=34.2
Q ss_pred ceEEEECCCCc-EEEeeCCCCCCC--cccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 324 DLHILDLETMT-WDEIDAVGVPPS--PRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 324 ~v~~yd~~t~~-W~~v~~~g~~p~--~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
.++++|+.+.+ ...+.... .+. ...........+++++++.... ......++++|+.+.+...+
T Consensus 229 ~l~~~d~~~~~~~~~l~~~~-~~~~~~~~~~~~~~SpDg~~l~~~~~~-~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 229 SLHVIGLNGPTHDLEMMPPD-DPRMREYYITMVKWATSTKVAVTWLNR-AQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp EEEEEESSSSCCCEECCCCC-CGGGSSEEEEEEEESSSSEEEEEEEET-TSCEEEEEEEETTTCCEEEE
T ss_pred EEEEEECCCCceeEEeeCCc-cCCCccceeEEEEEeCCCeEEEEEEcC-CCCeEEEEEEeCCCCcceEE
Confidence 68899988776 24443210 000 1122334444566666554322 12235689999988776554
No 309
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=32.19 E-value=3.7e+02 Score=26.32 Aligned_cols=141 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCEEEEEeccC-CCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE---CCEEEEEecCCCCCCCCCceEEEEC
Q 008260 255 ENKLLSIAGHT-KDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV---GTSLVIFGGEDAKRSLLNDLHILDL 330 (572)
Q Consensus 255 ~~~iyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~ 330 (572)
++.+||.+-.. .. |+++++....-.........+..|.+..-.++ ++.|++..+ .+. ++.||+
T Consensus 147 ~GnaYVt~s~~~~~------I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~------L~~fD~ 213 (334)
T 2p9w_A 147 DGNSYVAFALGMPA------IARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRA------LTAFDV 213 (334)
T ss_dssp TSCEEEEEEESSCE------EEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSS------EEEEEC
T ss_pred CCCEEEeCCCCCCe------EEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCe------EEEEcC
Q ss_pred CCCcE--EEee------CCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCC--cc
Q 008260 331 ETMTW--DEID------AVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTP--RA 400 (572)
Q Consensus 331 ~t~~W--~~v~------~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~--R~ 400 (572)
.+... ..+. .. ..+-.- ...-.++..++|.-+. +.++++-...+ |......+..|.+ -.
T Consensus 214 ~~pv~~~v~~~~~G~~~~~---~~~dgi-lp~~~~G~vllV~~~~------~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~ 282 (334)
T 2p9w_A 214 SKPYAWPEPVKINGDFGTL---SGTEKI-VTVPVGNESVLVGARA------PYAISFRSWDN-WKSANIKKTKRSELQNS 282 (334)
T ss_dssp SSSSCCCEECEESSCCCCC---TTEEEE-EEEEETTEEEEEEEET------TEEEEEECSST-TSEEEEEEEECGGGGSS
T ss_pred CCCcceeecccccCCcccc---cCcccc-cccccCCEEEEEEcCC------CCEEEEECCCC-cceeEEeeeecCccccC
Q ss_pred ccEEEEE---CCccccceeeeeeccCCCCEEEEEcCC
Q 008260 401 GHAGVTI---GENWFLGLSLVVSSYSGEDVIVAFGGY 434 (572)
Q Consensus 401 ~~~~~~~---~~~~~iG~s~~~~~~~g~~~l~v~GG~ 434 (572)
+.+.+++ +. +++||++-++
T Consensus 283 g~tt~t~~~~~~---------------~~~iYvv~~~ 304 (334)
T 2p9w_A 283 GFTAVADYYQGS---------------EQGLYAVSAF 304 (334)
T ss_dssp CEEEEEEEEETT---------------EEEEEEEECC
T ss_pred ceeEEEEecccc---------------CCeEEEEeee
No 310
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=31.25 E-value=3.7e+02 Score=25.99 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=60.4
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCC---CCCcc
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTK---DPSEI 271 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~---~~~~~ 271 (572)
.++|+.-.......-+.+++||+.+.+-... .. .....+.+..- +..+|+..-... .+...
T Consensus 16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~--i~-------------~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~ 80 (361)
T 2oiz_A 16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLGM--VP-------------TAFNGHVQVSNDGKKIYTMTTYHERITRGKRS 80 (361)
T ss_dssp GEEEEEECCGGGGGGCEEEEEETTTCCEEEE--EE-------------CCEEEEEEECTTSSEEEEEEEEETTSSSSCEE
T ss_pred CEEEEECCCCCccccCeEEEEECCCCeEEEE--ec-------------CCCCCceEECCCCCEEEEEEecccccccCCCC
Confidence 5678775322222235799999988765432 11 12211222222 457888753211 11234
Q ss_pred eeEEEEECCCCce-EEeccCCCCC-CCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcE
Q 008260 272 IQVKVFDLQTCSW-STLKTYGKPP-VSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTW 335 (572)
Q Consensus 272 ~~v~~yd~~~~~W-~~~~~~g~~p-~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W 335 (572)
+.|.+||+.+.+- .+++..+... ....-+.+++. +..||+.... ..+.+.+||+.+.+-
T Consensus 81 ~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~-----~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 81 DVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS-----PATSIGIVDVAKGDY 143 (361)
T ss_dssp EEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES-----SSEEEEEEETTTTEE
T ss_pred CEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC-----CCCeEEEEECCCCcE
Confidence 6799999987543 3333210000 11122233443 5578776321 135689999888754
No 311
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=31.19 E-value=3.9e+02 Score=26.28 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=15.9
Q ss_pred ccceEEEEEcCCEEEEEeCCC
Q 008260 348 RSDHAAAVHAERYLLIFGGGS 368 (572)
Q Consensus 348 R~~~~~~~~~~~~lyv~GG~~ 368 (572)
-..|++++..++.+|..|-..
T Consensus 325 G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 325 GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp CSSEEEEEETTCCEEEEECCT
T ss_pred ccCeEEEECCCCCEEEeeCCC
Confidence 356788888788899999644
No 312
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=30.20 E-value=3.7e+02 Score=25.69 Aligned_cols=30 Identities=3% Similarity=0.031 Sum_probs=20.0
Q ss_pred EEEEcCCEEEEEeCCCCCcCcCc-EEEEECCCCcEE
Q 008260 353 AAVHAERYLLIFGGGSHAACFND-LHVLDLQTMEWS 387 (572)
Q Consensus 353 ~~~~~~~~lyv~GG~~~~~~~~~-v~~yd~~t~~W~ 387 (572)
++...++.+++.|+.+ .. +.++|..+.+-.
T Consensus 201 ~~~s~~g~~l~s~s~d-----~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 201 VRLNRKSDMVATCSQD-----GTIIRVFKTEDGVLV 231 (355)
T ss_dssp EEECTTSSEEEEEETT-----CSEEEEEETTTCCEE
T ss_pred EEECCCCCEEEEEeCC-----CCEEEEEECCCCcEE
Confidence 3344556688888765 45 889998876543
No 313
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=27.91 E-value=3.8e+02 Score=25.04 Aligned_cols=114 Identities=9% Similarity=-0.007 Sum_probs=65.8
Q ss_pred cceeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCc
Q 008260 247 AGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLND 324 (572)
Q Consensus 247 ~~hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 324 (572)
.....+.. ++.||+.--. ...|++||+.... ...... + ..-++.++. +++|||...... ...
T Consensus 33 ~pegia~~~~g~lyv~d~~------~~~I~~~d~~g~~-~~~~~~---~--~~p~gia~~~dG~l~vad~~~~----~~~ 96 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHE------VGEIVSITPDGNQ-QIHATV---E--GKVSGLAFTSNGDLVATGWNAD----SIP 96 (306)
T ss_dssp CEEEEEECTTSCEEEEETT------TTEEEEECTTCCE-EEEEEC---S--SEEEEEEECTTSCEEEEEECTT----SCE
T ss_pred CcceEEECCCCCEEEEeCC------CCeEEEECCCCce-EEEEeC---C--CCceeEEEcCCCcEEEEeccCC----cce
Confidence 33444442 5778888532 2368999987643 322211 1 123344443 567888753211 124
Q ss_pred eEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 325 LHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 325 v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
++.||+.+.+.+.+... +..+.....+...++.+|+.--. ...+|++|+.+.
T Consensus 97 v~~~d~~~g~~~~~~~~---~~~~~~~g~~~~~~~~~~v~d~~-----~g~i~~~d~~~~ 148 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTL---PDAIFLNGITPLSDTQYLTADSY-----RGAIWLIDVVQP 148 (306)
T ss_dssp EEEEECTTSCEEEEEEC---TTCSCEEEEEESSSSEEEEEETT-----TTEEEEEETTTT
T ss_pred EEEEcCCCCeEEEEEeC---CCccccCcccccCCCcEEEEECC-----CCeEEEEeCCCC
Confidence 88899888888776544 34455555555556667776421 247999998764
No 314
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=27.74 E-value=12 Score=37.46 Aligned_cols=110 Identities=20% Similarity=0.168 Sum_probs=0.0
Q ss_pred ceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCc--eEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCce
Q 008260 248 GHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDL 325 (572)
Q Consensus 248 ~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v 325 (572)
+++..++.+...++|+.+.. ++++|..+.+ |+.- . .....+.++.++.+|+.++.++. +
T Consensus 1 g~ssP~v~~~~v~~gs~dg~------v~a~d~~tG~~~W~~~----~---~~~~s~p~~~~g~~~v~~s~dg~------l 61 (369)
T 2hz6_A 1 GSSTVTLPETLLFVSTLDGS------LHAVSKRTGSIKWTLK----E---DPVLQVPTHVEEPAFLPDPNDGS------L 61 (369)
T ss_dssp -------CTTEEEEEETTSE------EEEEETTTCCEEEEEE----C---CCSCCCC-----CCEEECTTTCC------E
T ss_pred CCCCCeeeCCEEEEEcCCCE------EEEEECCCCCEEEEec----C---CCceecceEcCCCEEEEeCCCCE------E
Q ss_pred EEEECCCCcEEEeeCCCCCCCcccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 326 HILDLETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 326 ~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
+.+|.++.+-...-.. ..+....+..++ .++ .+++|+.+ ..++.+|+++.+
T Consensus 62 ~a~d~~tG~~~w~~~~---~~~~~~~~sp~~~~~~-~v~~g~~d-----g~v~a~D~~tG~ 113 (369)
T 2hz6_A 62 YTLGSKNNEGLTKLPF---TIPELVQASPCRSSDG-ILYMGKKQ-----DIWYVIDLLTGE 113 (369)
T ss_dssp EEC-----CCSEECSC---CHHHHHTTCSCC------CCCCEEE-----EEEEEECCC---
T ss_pred EEEECCCCceeeeeec---cCccccccCceEecCC-EEEEEeCC-----CEEEEEECCCCc
No 315
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=26.78 E-value=7e+02 Score=27.78 Aligned_cols=106 Identities=16% Similarity=0.141 Sum_probs=56.0
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCc
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 334 (572)
++.+++.|+.++ .|.+||..+.+-.... +....-.+++...+++++.|+.+ +.+.++|+.+.+
T Consensus 28 dg~~lAsgs~Dg------~I~lw~~~~~~~~~~~-----~~~~~V~~l~fspg~~L~S~s~D------~~v~lWd~~~~~ 90 (902)
T 2oaj_A 28 TQNLLAIATVTG------EVHIYGQQQVEVVIKL-----EDRSAIKEMRFVKGIYLVVINAK------DTVYVLSLYSQK 90 (902)
T ss_dssp TTTEEEEEETTS------EEEEECSTTCEEEEEC-----SSCCCEEEEEEETTTEEEEEETT------CEEEEEETTTCS
T ss_pred CCCEEEEEeCCC------EEEEEeCCCcEEEEEc-----CCCCCEEEEEEcCCCEEEEEECc------CeEEEEECCCCc
Confidence 566777777653 5778887654432221 11111223333345555555542 458888988765
Q ss_pred EEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 335 WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 335 W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
-...-.. + ..-.+++...++..++.|+.+ ..+.+||+.+.+-.
T Consensus 91 ~~~~~~~---~--~~V~~v~~sp~g~~l~sgs~d-----g~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 91 VLTTVFV---P--GKITSIDTDASLDWMLIGLQN-----GSMIVYDIDRDQLS 133 (902)
T ss_dssp EEEEEEC---S--SCEEEEECCTTCSEEEEEETT-----SCEEEEETTTTEEE
T ss_pred EEEEEcC---C--CCEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCccc
Confidence 3222111 1 111233333444466777654 46889998887643
No 316
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=26.26 E-value=5.7e+02 Score=26.61 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=59.0
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCc
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 334 (572)
+++.++.|+.+. .+.++|+.+.+....-..+. ........+...+..++.++.+ ..+..+|+.+..
T Consensus 250 dg~~l~s~s~D~------~v~lWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~s~d------~~i~~~~~~~~~ 315 (611)
T 1nr0_A 250 DGTKIASASADK------TIKIWNVATLKVEKTIPVGT--RIEDQQLGIIWTKQALVSISAN------GFINFVNPELGS 315 (611)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEECCS--SGGGCEEEEEECSSCEEEEETT------CCEEEEETTTTE
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCceeeeecCCC--CccceeEEEEEcCCEEEEEeCC------CcEEEEeCCCCC
Confidence 667777777653 68899998876654322111 1111122333355556666643 347788887765
Q ss_pred EEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 335 WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 335 W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
-..... + ....-.+++...++..++.|+.+ ..+..+|+.+.+...
T Consensus 316 ~~~~~~-g---h~~~v~~l~~spdg~~l~s~s~D-----~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 316 IDQVRY-G---HNKAITALSSSADGKTLFSADAE-----GHINSWDISTGISNR 360 (611)
T ss_dssp EEEEEC-C---CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEE
T ss_pred cceEEc-C---CCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCceee
Confidence 322211 1 11122233344455577777755 357777777655433
No 317
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=25.15 E-value=7.2e+02 Score=27.39 Aligned_cols=147 Identities=12% Similarity=0.043 Sum_probs=81.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE--eCCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP--WENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~--~~~~iyv~GG~~~~~~~~~ 272 (572)
+++||+.-. ..+.|+++++....-+.+.... ...| ..+++ .++.||+.--. ...
T Consensus 482 ~~~LY~tD~-----~~~~I~v~~ldG~~~~~l~~~~-----------l~~P---~gIaVDp~~g~LYwtD~g-----~~~ 537 (791)
T 3m0c_C 482 HSNIYWTDS-----VLGTVSVADTKGVKRKTLFREN-----------GSKP---RAIVVDPVHGFMYWTDWG-----TPA 537 (791)
T ss_dssp TTEEEEEET-----TTTEEEEEETTSSSEEEEEECT-----------TCCE---EEEEEETTTTEEEEEECS-----SSC
T ss_pred CCcEEEEec-----CCCeEEEEeCCCCeEEEEEeCC-----------CCCc---ceEEEecCCCCEEEecCC-----CCC
Confidence 567887743 2346888888776655543321 0112 13333 35899987411 124
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeC-CCCCCCccc
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDA-VGVPPSPRS 349 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~-~g~~p~~R~ 349 (572)
.|+++++....-..+... .+. .-.+.++. +++||+.-.. .+.|+++|++...-..+.. .+..+ .
T Consensus 538 ~I~~~~~dG~~~~~lv~~-~l~---~P~GLavD~~~~~LYwaD~~------~~~I~~~d~dG~~~~~v~~~~~~l~---~ 604 (791)
T 3m0c_C 538 KIKKGGLNGVDIYSLVTE-NIQ---WPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLA---H 604 (791)
T ss_dssp EEEEEETTSCCEEEEECS-SCS---CEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECTTTTS---S
T ss_pred eEEEEecCCCceEEEEeC-CCC---CceEEEEecCCCeEEEEeCC------CCcEEEEecCCCceEEEecCCCccC---C
Confidence 789999876655444321 111 12234444 7899998432 4679999987654433332 21122 2
Q ss_pred ceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 350 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
..+.++. +++||+.--.+ +.|+++|..+.
T Consensus 605 P~glav~-~~~lYwtD~~~-----~~I~~~dk~tG 633 (791)
T 3m0c_C 605 PFSLAVF-EDKVFWTDIIN-----EAIFSANRLTG 633 (791)
T ss_dssp EEEEEEE-TTEEEEEETTT-----TEEEEEETTTC
T ss_pred CCEEEEe-CCEEEEEECCC-----CEEEEEeCCCC
Confidence 2455555 45799976432 56888875443
No 318
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=24.38 E-value=5.4e+02 Score=25.69 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=62.1
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
++.||+.--. ..|.+||+.+.+.+.+.. ...+- ...++. ++.||+....... ....+..++...
T Consensus 149 ~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~----~~~~P-~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~~g 214 (430)
T 3tc9_A 149 HNHLYLVGEQ-------HPTRLIDFEKEYVSTVYS----GLSKV-RTICWTHEADSMIITNDQNNN--DRPNNYILTRES 214 (430)
T ss_dssp EEEEEEEEBT-------EEEEEEETTTTEEEEEEC----CCSCE-EEEEECTTSSEEEEEECCSCT--TSEEEEEEEGGG
T ss_pred CCeEEEEeCC-------CcEEEEECCCCEEEEEec----CCCCc-ceEEEeCCCCEEEEEeCCCCc--ccceEEEEeCCC
Confidence 4788888432 689999999988887753 11111 222332 3469988654322 123466666543
Q ss_pred CcE---EEeeCCCCCCCcccceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 333 MTW---DEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 333 ~~W---~~v~~~g~~p~~R~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
.| ..+... ..-+.+++.. ++.||+.--.. +.|++||+.+..-..+
T Consensus 215 -~~~~~~~l~~~------~~p~giavdp~~g~lyv~d~~~-----~~V~~~~~~~~~~~~~ 263 (430)
T 3tc9_A 215 -GFKVITELTKG------QNCNGAETHPINGELYFNSWNA-----GQVFRYDFTTQETTPL 263 (430)
T ss_dssp -TSCSEEEEEEC------SSCCCEEECTTTCCEEEEETTT-----TEEEEEETTTTEEEEE
T ss_pred -ceeeeeeeccC------CCceEEEEeCCCCEEEEEECCC-----CEEEEEECCCCcEEEE
Confidence 23 233221 2234555554 56688875322 5699999987765333
No 319
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=23.97 E-value=5.3e+02 Score=25.45 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=15.6
Q ss_pred cceEEEEEcCCEEEEEeCCC
Q 008260 349 SDHAAAVHAERYLLIFGGGS 368 (572)
Q Consensus 349 ~~~~~~~~~~~~lyv~GG~~ 368 (572)
..|++++..++.||..|-..
T Consensus 346 ~~hs~alt~~G~v~~wG~n~ 365 (413)
T 1a12_A 346 ASVGYAVTKDGRVFAWGMGT 365 (413)
T ss_dssp SSEEEEEETTSCEEEEECCT
T ss_pred cceEEEEeCCCCEEEecCCC
Confidence 46788888888899999643
No 320
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=22.52 E-value=4.9e+02 Score=24.52 Aligned_cols=195 Identities=6% Similarity=-0.006 Sum_probs=101.8
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEcCC----CcEEEeeecccccCCCCCCCCCCCCCcceeEEE--eCCEEEE
Q 008260 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRS----WAWSKIQAKAVAESTESPSPALLTPCAGHSLIP--WENKLLS 260 (572)
Q Consensus 189 ~s~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t----~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~--~~~~iyv 260 (572)
++++.. +++||+..-. ...++++|+.+ .....+-... ..+ -+.++. .++.||+
T Consensus 33 ~g~~~d~~~~~ly~~D~~-----~~~I~~~~~~g~~~~~~~~~~~~~~-------------~~~-p~glavd~~~~~ly~ 93 (316)
T 1ijq_A 33 VALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRD-------------IQA-PDGLAVDWIHSNIYW 93 (316)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEECSS-------------CSC-CCEEEEETTTTEEEE
T ss_pred EEEEEEeCCCEEEEEECC-----CCcEEEEECCCCCCCcccEEEEeCC-------------CCC-cCEEEEeecCCeEEE
Confidence 455554 5789998642 34689999876 2222221110 111 123333 4789999
Q ss_pred EeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEe
Q 008260 261 IAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEI 338 (572)
Q Consensus 261 ~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v 338 (572)
.-.. ...|.++|+....-..+... .+..| ...++. ++.||+..-.. ...|++++++...-+.+
T Consensus 94 ~d~~------~~~I~~~~~~g~~~~~~~~~-~~~~P---~~iavdp~~g~ly~~d~~~-----~~~I~~~~~dG~~~~~~ 158 (316)
T 1ijq_A 94 TDSV------LGTVSVADTKGVKRKTLFRE-NGSKP---RAIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGVDIYSL 158 (316)
T ss_dssp EETT------TTEEEEEETTSSSEEEEEEC-TTCCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCCEEEE
T ss_pred EECC------CCEEEEEeCCCCceEEEEEC-CCCCc---ceEEeCCCCCEEEEEccCC-----CCeEEEEcCCCCCeEEE
Confidence 8433 24688999876544444321 12222 234443 67899875311 25699999876554444
Q ss_pred eCCCCCCCcccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccC-CCCCCCccccEEEEECCcccccee
Q 008260 339 DAVGVPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQ-GEIPTPRAGHAGVTIGENWFLGLS 416 (572)
Q Consensus 339 ~~~g~~p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~-g~~p~~R~~~~~~~~~~~~~iG~s 416 (572)
... .-..-.+.++- .++.||+.-.. .+.|+++|+....-+.+... +.+. .-.++++.++
T Consensus 159 ~~~----~~~~P~gla~d~~~~~lY~~D~~-----~~~I~~~d~dg~~~~~~~~~~~~~~---~P~giav~~~------- 219 (316)
T 1ijq_A 159 VTE----NIQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLA---HPFSLAVFED------- 219 (316)
T ss_dssp ECS----SCSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTS---SEEEEEEETT-------
T ss_pred EEC----CCCCceEEEEeccCCEEEEEECC-----CCeEEEEecCCCceEEEeecCCccC---CcEEEEEECC-------
Confidence 321 11222344444 35679987543 25799999875433333211 1122 2234555443
Q ss_pred eeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 417 LVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 417 ~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
.||+.-- ..+.|.++|+.+.
T Consensus 220 ----------~ly~~d~----~~~~V~~~~~~~g 239 (316)
T 1ijq_A 220 ----------KVFWTDI----INEAIFSANRLTG 239 (316)
T ss_dssp ----------EEEEEET----TTTEEEEEETTTC
T ss_pred ----------EEEEEEC----CCCeEEEEeCCCC
Confidence 6777543 2256888887554
No 321
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=22.49 E-value=3.4e+02 Score=28.90 Aligned_cols=205 Identities=8% Similarity=-0.036 Sum_probs=0.0
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCC----cceeEEEeCCEEEEEeccCCCC---CcceeEEEEECCCCc
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPC----AGHSLIPWENKLLSIAGHTKDP---SEIIQVKVFDLQTCS 283 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R----~~hs~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~~~~ 283 (572)
..++++|+.+++-..+.. .... .......-+++.++++...... .....++++|+.+.+
T Consensus 36 ~~i~~~~~~~g~~~~~~~--------------~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~ 101 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILS--------------NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGE 101 (719)
T ss_dssp SCEEEEESSSCCEEEEEC--------------HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEcCCCcEEEEEc--------------cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCc
Q ss_pred eEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce------------
Q 008260 284 WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH------------ 351 (572)
Q Consensus 284 W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~------------ 351 (572)
..... .++......+..-.+..|..... ++++++|+.+..-..+...+....-..++
T Consensus 102 ~~~~~---~l~~~~~~~~~SPDG~~la~~~~--------~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 102 FVRGN---ELPRPIQYLCWSPVGSKLAYVYQ--------NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp ECCSS---CCCSSBCCEEECSSTTCEEEEET--------TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred cccce---ecCcccccceECCCCCEEEEEEC--------CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Q ss_pred --EEEEEcCCEEEEEeCCCCCc-----------------------------CcCcEEEEECCCCc---EEeeccCCCCCC
Q 008260 352 --AAAVHAERYLLIFGGGSHAA-----------------------------CFNDLHVLDLQTME---WSRPTQQGEIPT 397 (572)
Q Consensus 352 --~~~~~~~~~lyv~GG~~~~~-----------------------------~~~~v~~yd~~t~~---W~~v~~~g~~p~ 397 (572)
+.+...|++.++++..+... ....++++|+.+.+ |..+.....+..
T Consensus 171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 250 (719)
T 1z68_A 171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS 250 (719)
T ss_dssp SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Q ss_pred CccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEe----CCCCccccc
Q 008260 398 PRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLK----PSHKSTLSS 455 (572)
Q Consensus 398 ~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd----~~~~~~~~~ 455 (572)
.......+.+.. ++++++.....+.....++++| +.+......
T Consensus 251 ~~~~~~~~~~Sp---------------D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 251 SDYYFSWLTWVT---------------DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp SCEEEEEEEESS---------------SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred CcceEEEeEEeC---------------CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
No 322
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=22.11 E-value=3.4e+02 Score=27.15 Aligned_cols=72 Identities=8% Similarity=0.009 Sum_probs=42.1
Q ss_pred CCEEEEEccC---C-CCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCC--EEEEEeccCCCC
Q 008260 195 QDKMYIYGGN---H-NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN--KLLSIAGHTKDP 268 (572)
Q Consensus 195 ~~~lyv~GG~---~-~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~--~iyv~GG~~~~~ 268 (572)
+++||+.-+. . ....-+.++++|+.+.+-..--... .+.....+.-++ .+|+.-+.
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--------------~~~~~lavs~D~~~~ly~tn~~---- 352 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--------------HEIDSINVSQDEKPLLYALSTG---- 352 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--------------EEECEEEECSSSSCEEEEEETT----
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--------------CCcceEEECCCCCeEEEEEcCC----
Confidence 6899997431 1 1223578999999998765433221 122222223354 46665432
Q ss_pred CcceeEEEEECCCCceEE
Q 008260 269 SEIIQVKVFDLQTCSWST 286 (572)
Q Consensus 269 ~~~~~v~~yd~~~~~W~~ 286 (572)
.++|.+||..+.+-..
T Consensus 353 --~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 353 --DKTLYIHDAESGEELR 368 (386)
T ss_dssp --TTEEEEEETTTCCEEE
T ss_pred --CCeEEEEECCCCcEEE
Confidence 2479999999887543
No 323
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=21.69 E-value=5.7e+02 Score=24.97 Aligned_cols=139 Identities=9% Similarity=0.009 Sum_probs=79.6
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcceeEEEEECCCCceEEec
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK 288 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 288 (572)
+.+.++|+.......+... ...-.+++.. ++.||+.--. ...|+++++.....+.+.
T Consensus 96 ~~I~~i~~~~~~~~~~~~~---------------~~~~~gl~~d~~~~~ly~~D~~------~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNN---------------LENAIALDFHHRRELVFWSDVT------LDRILRANLNGSNVEEVV 154 (386)
T ss_dssp SCEEEECTTSCCCEEEECS---------------CSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCCEEEEE
T ss_pred ccceeeccCCCcEEEEecC---------------CCccEEEEEecCCCeEEEEeCC------CCcEEEEecCCCCcEEEE
Confidence 4688889888776655431 1122333333 6889988432 247999999887766654
Q ss_pred cCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEE-cCCEEEEEe
Q 008260 289 TYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFG 365 (572)
Q Consensus 289 ~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~G 365 (572)
..+ +..+ .+.++. ++.||+.-.. .+.+++++++...-+.+... ....| .+.++. .++.||+.-
T Consensus 155 ~~~-~~~p---~glavd~~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~~-~l~~P---~giavdp~~g~ly~td 220 (386)
T 3v65_B 155 STG-LESP---GGLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQ-SLEKP---RAIALHPMEGTIYWTD 220 (386)
T ss_dssp CSS-CSCC---CCEEEETTTTEEEEEETT------TTEEEECBTTSCSCEEEECS-SCSCE---EEEEEETTTTEEEEEE
T ss_pred eCC-CCCc---cEEEEEeCCCeEEEEcCC------CCeEEEEeCCCCceEEeecC-CCCCC---cEEEEEcCCCeEEEec
Confidence 321 1111 234443 7899987543 34688888876554444322 11222 234444 356788875
Q ss_pred CCCCCcCcCcEEEEECCCCcEEe
Q 008260 366 GGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 366 G~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
-.. ...|+++++....-+.
T Consensus 221 ~~~----~~~I~r~~~dG~~~~~ 239 (386)
T 3v65_B 221 WGN----TPRIEASSMDGSGRRI 239 (386)
T ss_dssp CSS----SCEEEEEETTSCSCEE
T ss_pred cCC----CCEEEEEeCCCCCcEE
Confidence 321 2569999987654333
No 324
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=21.58 E-value=5.7e+02 Score=25.78 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=43.7
Q ss_pred CCEEEEEeccCCC---CCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CC-EEEEEecCCCCCCCCCceEEE
Q 008260 255 ENKLLSIAGHTKD---PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GT-SLVIFGGEDAKRSLLNDLHIL 328 (572)
Q Consensus 255 ~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~y 328 (572)
++++||.-..... ....++|.++|+.+.+-..- .+.+..-+++.+. +. .+|+.-.. .++|.+|
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~-----I~vg~~P~gia~spDg~~~lyv~n~~------s~~VsVI 398 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINK-----IELGHEIDSINVSQDAEPLLYALSAG------TQTLHIY 398 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE-----EEEEEEECEEEECCSSSCEEEEEETT------TTEEEEE
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEEEE-----EECCCCcCeEEEccCCCEEEEEEcCC------CCeEEEE
Confidence 5899998542211 12357899999988763322 2233334445444 44 67776542 4679999
Q ss_pred ECCCCcEEE
Q 008260 329 DLETMTWDE 337 (572)
Q Consensus 329 d~~t~~W~~ 337 (572)
|+.+.+-..
T Consensus 399 D~~t~kvv~ 407 (426)
T 3c75_H 399 DAATGEELR 407 (426)
T ss_dssp ETTTCCEEE
T ss_pred ECCCCCEEE
Confidence 988877543
No 325
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=21.38 E-value=6e+02 Score=25.09 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=15.7
Q ss_pred cceEEEEEcCCEEEEEeCCC
Q 008260 349 SDHAAAVHAERYLLIFGGGS 368 (572)
Q Consensus 349 ~~~~~~~~~~~~lyv~GG~~ 368 (572)
..|++++..++.+|.+|-..
T Consensus 355 ~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 355 EVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp TTEEEEEETTSCEEEEECCT
T ss_pred CCeEEEEcCCCCEEEECCCC
Confidence 56788888888899999644
No 326
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=21.33 E-value=4.8e+02 Score=23.98 Aligned_cols=141 Identities=6% Similarity=0.062 Sum_probs=68.7
Q ss_pred EEE-CCEEEEEccCCCCcccCcEEEEEcCCC-cEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCC
Q 008260 192 AVV-QDKMYIYGGNHNGRYLSDMHILDLRSW-AWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDP 268 (572)
Q Consensus 192 ~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~-~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~ 268 (572)
+.. ++.||+... -..+++||+... .|..... ... -.+.+. .++.||+-.
T Consensus 143 ~~~~~g~l~vgt~------~~~l~~~d~~g~~~~~~~~~---------------~~~-~~~~~~d~~g~l~v~t------ 194 (330)
T 3hxj_A 143 IVSEDGTIYVGSN------DNYLYAINPDGTEKWRFKTN---------------DAI-TSAASIGKDGTIYFGS------ 194 (330)
T ss_dssp EECTTSCEEEECT------TSEEEEECTTSCEEEEEECS---------------SCC-CSCCEECTTCCEEEES------
T ss_pred EEcCCCEEEEEcC------CCEEEEECCCCCEeEEEecC---------------CCc-eeeeEEcCCCEEEEEe------
Confidence 444 567776431 136899998722 3544211 111 122233 367777654
Q ss_pred CcceeEEEEECCC-CceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCc-EEEeeCCCCCC
Q 008260 269 SEIIQVKVFDLQT-CSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMT-WDEIDAVGVPP 345 (572)
Q Consensus 269 ~~~~~v~~yd~~~-~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~v~~~g~~p 345 (572)
..+++||... ..|+.... .. ...+.+.. ++.||+.. . .+.+++||+.... |...... .
T Consensus 195 ---~~l~~~d~~g~~~~~~~~~-----~~-~~~~~~~~~~g~l~v~t-~------~~gl~~~~~~g~~~~~~~~~~---~ 255 (330)
T 3hxj_A 195 ---DKVYAINPDGTEKWNFYAG-----YW-TVTRPAISEDGTIYVTS-L------DGHLYAINPDGTEKWRFKTGK---R 255 (330)
T ss_dssp ---SSEEEECTTSCEEEEECCS-----SC-CCSCCEECTTSCEEEEE-T------TTEEEEECTTSCEEEEEECSS---C
T ss_pred ---CEEEEECCCCcEEEEEccC-----Cc-ceeceEECCCCeEEEEc-C------CCeEEEECCCCCEeEEeeCCC---C
Confidence 2588888442 34654421 11 12233333 44777642 1 2358888875544 4433211 1
Q ss_pred CcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC-cEEe
Q 008260 346 SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM-EWSR 388 (572)
Q Consensus 346 ~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~-~W~~ 388 (572)
. ..+.++..++.||+... + ..+++||+... .|..
T Consensus 256 --~-~~~~~~~~~g~l~v~t~-~-----ggl~~~d~~g~~~~~~ 290 (330)
T 3hxj_A 256 --I-ESSPVIGNTDTIYFGSY-D-----GHLYAINPDGTEKWNF 290 (330)
T ss_dssp --C-CSCCEECTTSCEEEECT-T-----CEEEEECTTSCEEEEE
T ss_pred --c-cccceEcCCCeEEEecC-C-----CCEEEECCCCcEEEEE
Confidence 1 11233333566776432 1 35899997533 4553
Done!