Query 008262
Match_columns 572
No_of_seqs 630 out of 3385
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 21:34:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 8E-113 2E-117 908.5 23.5 411 158-572 1-417 (506)
2 KOG2940 Predicted methyltransf 99.8 1.8E-21 3.9E-26 189.7 5.3 234 256-513 56-296 (325)
3 PRK10258 biotin biosynthesis p 99.8 1.5E-19 3.2E-24 182.3 19.0 199 255-483 27-227 (251)
4 COG2226 UbiE Methylase involve 99.7 7.6E-16 1.6E-20 154.5 13.8 115 257-377 38-157 (238)
5 PF01209 Ubie_methyltran: ubiE 99.6 1.9E-15 4.2E-20 151.8 10.4 104 273-377 46-154 (233)
6 TIGR02072 BioC biotin biosynth 99.6 2.3E-14 5E-19 141.6 16.6 180 255-462 16-199 (240)
7 PF08241 Methyltransf_11: Meth 99.6 3.5E-15 7.6E-20 125.9 7.4 90 279-374 1-95 (95)
8 PTZ00098 phosphoethanolamine N 99.5 1.3E-13 2.7E-18 141.0 15.2 113 259-377 41-157 (263)
9 PLN02233 ubiquinone biosynthes 99.5 9.7E-14 2.1E-18 141.7 13.3 104 273-377 72-183 (261)
10 PLN02244 tocopherol O-methyltr 99.5 1.2E-13 2.5E-18 146.3 13.3 122 254-377 97-224 (340)
11 PRK01683 trans-aconitate 2-met 99.5 2.4E-13 5.3E-18 137.6 15.0 184 258-460 19-207 (258)
12 PLN02396 hexaprenyldihydroxybe 99.5 2.1E-13 4.5E-18 143.1 12.8 102 274-377 131-236 (322)
13 PRK15068 tRNA mo(5)U34 methylt 99.5 4.8E-13 1E-17 140.6 14.9 113 259-377 111-227 (322)
14 PF13489 Methyltransf_23: Meth 99.5 6.6E-14 1.4E-18 129.9 7.5 94 273-377 21-116 (161)
15 PRK11088 rrmA 23S rRNA methylt 99.5 3.3E-13 7.2E-18 138.3 11.7 165 184-388 20-192 (272)
16 PRK15451 tRNA cmo(5)U34 methyl 99.5 3.2E-13 7E-18 136.5 11.4 120 253-377 37-165 (247)
17 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.9E-13 4.1E-18 135.9 9.4 107 274-384 59-167 (243)
18 TIGR00740 methyltransferase, p 99.4 1.1E-12 2.5E-17 131.5 14.8 103 273-377 52-162 (239)
19 TIGR02752 MenG_heptapren 2-hep 99.4 1.6E-12 3.5E-17 129.2 15.3 124 259-389 34-163 (231)
20 PRK14103 trans-aconitate 2-met 99.4 3.8E-13 8.3E-18 136.3 10.3 105 259-376 18-126 (255)
21 KOG4300 Predicted methyltransf 99.4 1.3E-12 2.9E-17 126.5 13.3 149 276-436 78-231 (252)
22 KOG1540 Ubiquinone biosynthesi 99.4 1.8E-12 3.8E-17 129.3 13.9 104 273-378 99-216 (296)
23 TIGR00452 methyltransferase, p 99.4 9.7E-13 2.1E-17 137.6 12.5 112 260-377 111-226 (314)
24 PRK11036 putative S-adenosyl-L 99.4 1.7E-12 3.6E-17 131.7 12.8 102 273-376 43-149 (255)
25 PLN02336 phosphoethanolamine N 99.4 4.7E-12 1E-16 139.5 15.7 103 273-377 265-370 (475)
26 PF12847 Methyltransf_18: Meth 99.4 1.8E-12 3.9E-17 113.8 9.4 101 275-376 2-111 (112)
27 PRK05785 hypothetical protein; 99.4 3.4E-12 7.3E-17 127.7 12.4 88 274-370 51-141 (226)
28 PRK11207 tellurite resistance 99.4 3E-12 6.4E-17 125.3 11.5 100 274-375 30-133 (197)
29 PF13847 Methyltransf_31: Meth 99.4 3.3E-12 7.2E-17 119.2 10.8 101 274-377 3-111 (152)
30 TIGR00477 tehB tellurite resis 99.4 3.5E-12 7.7E-17 124.6 11.3 100 274-375 30-132 (195)
31 PRK11873 arsM arsenite S-adeno 99.4 9.7E-12 2.1E-16 127.1 15.1 103 273-377 76-184 (272)
32 PF08242 Methyltransf_12: Meth 99.3 4.6E-13 1E-17 115.7 2.6 93 279-372 1-99 (99)
33 PRK08317 hypothetical protein; 99.3 1.4E-11 3E-16 121.5 13.0 116 256-377 5-125 (241)
34 PF02353 CMAS: Mycolic acid cy 99.3 1.2E-11 2.7E-16 127.1 10.7 126 243-376 35-166 (273)
35 COG2230 Cfa Cyclopropane fatty 99.3 2.3E-11 4.9E-16 124.7 11.8 131 243-381 45-181 (283)
36 PRK00107 gidB 16S rRNA methylt 99.2 8.5E-11 1.8E-15 114.5 13.7 96 274-376 45-145 (187)
37 PLN02490 MPBQ/MSBQ methyltrans 99.2 3.9E-11 8.4E-16 126.8 12.1 101 273-377 112-216 (340)
38 PRK06922 hypothetical protein; 99.2 8E-11 1.7E-15 132.0 15.2 102 274-376 418-537 (677)
39 PF13649 Methyltransf_25: Meth 99.2 5.9E-12 1.3E-16 109.5 4.0 92 278-370 1-101 (101)
40 PRK12335 tellurite resistance 99.2 4.7E-11 1E-15 123.5 11.3 99 275-375 121-222 (287)
41 PF08003 Methyltransf_9: Prote 99.2 9.6E-11 2.1E-15 120.5 13.0 174 259-455 104-293 (315)
42 PLN02585 magnesium protoporphy 99.2 1.3E-10 2.7E-15 121.9 14.2 181 254-453 125-313 (315)
43 TIGR03587 Pse_Me-ase pseudamin 99.2 8.2E-11 1.8E-15 116.0 11.1 95 274-376 43-142 (204)
44 TIGR02469 CbiT precorrin-6Y C5 99.2 2.1E-10 4.6E-15 101.8 12.4 98 274-376 19-122 (124)
45 PRK00121 trmB tRNA (guanine-N( 99.2 6.7E-11 1.5E-15 116.3 9.7 102 274-377 40-157 (202)
46 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 6.1E-10 1.3E-14 109.1 16.2 113 258-377 27-144 (223)
47 smart00828 PKS_MT Methyltransf 99.2 7.2E-11 1.6E-15 116.9 9.7 99 276-377 1-105 (224)
48 PRK11188 rrmJ 23S rRNA methylt 99.2 1.3E-10 2.7E-15 115.1 11.3 93 273-377 50-166 (209)
49 TIGR00406 prmA ribosomal prote 99.2 1.4E-10 3.1E-15 120.0 12.2 99 274-377 159-260 (288)
50 PF03848 TehB: Tellurite resis 99.2 1.6E-10 3.5E-15 112.7 11.7 101 274-376 30-133 (192)
51 KOG1270 Methyltransferases [Co 99.2 3.4E-11 7.4E-16 120.8 6.1 97 275-376 90-195 (282)
52 PRK00216 ubiE ubiquinone/menaq 99.2 6.5E-10 1.4E-14 110.0 15.2 103 274-377 51-159 (239)
53 TIGR00138 gidB 16S rRNA methyl 99.1 6E-10 1.3E-14 107.9 13.7 105 274-387 42-151 (181)
54 PRK11705 cyclopropane fatty ac 99.1 2E-10 4.3E-15 123.6 11.3 115 253-377 150-268 (383)
55 COG4106 Tam Trans-aconitate me 99.1 6E-11 1.3E-15 115.9 6.3 108 259-377 19-130 (257)
56 TIGR02021 BchM-ChlM magnesium 99.1 5.9E-10 1.3E-14 110.4 13.5 116 254-375 37-157 (219)
57 PLN02336 phosphoethanolamine N 99.1 1.4E-10 3.1E-15 127.7 9.9 112 260-377 27-143 (475)
58 PRK07580 Mg-protoporphyrin IX 99.1 6.2E-10 1.3E-14 110.3 13.1 114 255-373 45-163 (230)
59 smart00138 MeTrc Methyltransfe 99.1 2.1E-10 4.6E-15 117.5 9.7 103 274-376 99-242 (264)
60 TIGR00091 tRNA (guanine-N(7)-) 99.1 3.3E-10 7.1E-15 110.6 10.4 102 274-377 16-133 (194)
61 TIGR03840 TMPT_Se_Te thiopurin 99.1 3.8E-10 8.3E-15 112.1 10.4 104 274-377 34-153 (213)
62 KOG1541 Predicted protein carb 99.1 4.2E-10 9E-15 110.3 9.8 118 254-378 32-162 (270)
63 PRK15001 SAM-dependent 23S rib 99.1 4.9E-10 1.1E-14 120.0 11.2 112 259-376 217-340 (378)
64 PF05401 NodS: Nodulation prot 99.1 3E-10 6.6E-15 110.4 8.6 112 258-377 31-147 (201)
65 PRK09489 rsmC 16S ribosomal RN 99.1 6.6E-10 1.4E-14 117.8 11.6 112 259-377 185-304 (342)
66 PF07021 MetW: Methionine bios 99.1 3.4E-10 7.5E-15 109.7 8.4 101 260-376 5-109 (193)
67 TIGR00537 hemK_rel_arch HemK-r 99.1 1.7E-09 3.6E-14 103.9 13.2 101 274-377 19-141 (179)
68 KOG1271 Methyltransferases [Ge 99.1 1E-09 2.2E-14 104.8 11.2 133 255-390 48-193 (227)
69 COG2264 PrmA Ribosomal protein 99.1 5.2E-10 1.1E-14 115.6 10.1 100 273-377 161-264 (300)
70 PF05175 MTS: Methyltransferas 99.1 5.5E-10 1.2E-14 106.8 9.3 111 259-376 20-140 (170)
71 PF03141 Methyltransf_29: Puta 99.1 1.8E-10 3.8E-15 124.9 6.5 123 272-405 363-487 (506)
72 PRK08287 cobalt-precorrin-6Y C 99.1 3.5E-09 7.5E-14 102.4 14.6 111 255-376 16-131 (187)
73 PRK00517 prmA ribosomal protei 99.0 1.6E-09 3.4E-14 110.0 12.6 93 274-377 119-214 (250)
74 PRK14967 putative methyltransf 99.0 4.7E-09 1E-13 104.5 15.1 101 274-376 36-159 (223)
75 PRK06202 hypothetical protein; 99.0 1.3E-09 2.9E-14 108.9 10.9 98 273-376 59-166 (232)
76 TIGR01983 UbiG ubiquinone bios 99.0 1.8E-09 3.9E-14 106.6 11.6 102 274-377 45-150 (224)
77 PRK13944 protein-L-isoaspartat 99.0 2.7E-09 5.8E-14 105.2 12.1 107 258-376 60-173 (205)
78 KOG2361 Predicted methyltransf 99.0 1.6E-09 3.5E-14 107.6 10.4 152 274-433 71-233 (264)
79 PF06325 PrmA: Ribosomal prote 99.0 1.3E-09 2.9E-14 113.1 10.1 120 249-377 138-260 (295)
80 PRK05134 bifunctional 3-demeth 99.0 2.5E-09 5.4E-14 106.6 11.7 103 273-377 47-152 (233)
81 PRK14121 tRNA (guanine-N(7)-)- 99.0 2.4E-09 5.1E-14 114.7 12.2 102 273-376 121-235 (390)
82 TIGR03534 RF_mod_PrmC protein- 99.0 8.2E-09 1.8E-13 103.5 15.0 116 254-376 72-217 (251)
83 COG4976 Predicted methyltransf 99.0 1.2E-10 2.6E-15 114.6 1.5 99 273-377 124-226 (287)
84 COG2813 RsmC 16S RNA G1207 met 99.0 2.4E-09 5.2E-14 110.3 10.9 129 242-377 129-267 (300)
85 TIGR02081 metW methionine bios 98.9 3.1E-09 6.8E-14 103.4 9.9 87 274-368 13-104 (194)
86 PRK13255 thiopurine S-methyltr 98.9 3.2E-09 6.8E-14 105.9 10.0 98 274-375 37-154 (218)
87 PRK13942 protein-L-isoaspartat 98.9 6.3E-09 1.4E-13 103.1 11.8 108 257-376 63-176 (212)
88 TIGR03438 probable methyltrans 98.9 8.8E-09 1.9E-13 107.4 13.2 116 274-390 63-190 (301)
89 TIGR00080 pimt protein-L-isoas 98.9 7.3E-09 1.6E-13 102.6 11.6 107 258-376 65-177 (215)
90 PRK07402 precorrin-6B methylas 98.9 1.7E-08 3.6E-13 98.5 13.2 113 255-377 25-143 (196)
91 KOG3010 Methyltransferase [Gen 98.9 1.7E-09 3.8E-14 107.4 6.1 92 276-375 35-136 (261)
92 TIGR02716 C20_methyl_CrtF C-20 98.9 1E-08 2.2E-13 106.8 11.7 101 273-377 148-255 (306)
93 TIGR01177 conserved hypothetic 98.9 2E-08 4.3E-13 106.0 13.9 104 273-377 181-295 (329)
94 PLN03075 nicotianamine synthas 98.9 1.2E-08 2.6E-13 105.7 11.6 102 274-376 123-233 (296)
95 cd02440 AdoMet_MTases S-adenos 98.9 1.2E-08 2.5E-13 85.3 9.3 99 277-375 1-103 (107)
96 PRK14968 putative methyltransf 98.9 3.6E-08 7.9E-13 94.2 13.9 101 274-376 23-148 (188)
97 TIGR00438 rrmJ cell division p 98.9 2.7E-08 5.8E-13 96.4 13.0 94 273-377 31-147 (188)
98 PF05148 Methyltransf_8: Hypot 98.8 1.1E-08 2.4E-13 100.3 9.6 86 274-376 72-158 (219)
99 PRK00377 cbiT cobalt-precorrin 98.8 4.4E-08 9.6E-13 95.8 13.0 99 273-376 39-145 (198)
100 PRK00312 pcm protein-L-isoaspa 98.8 3.5E-08 7.5E-13 97.3 12.0 106 259-376 67-175 (212)
101 PRK04266 fibrillarin; Provisio 98.8 3.1E-08 6.7E-13 99.4 11.7 98 273-376 71-176 (226)
102 PF13659 Methyltransf_26: Meth 98.8 8.4E-09 1.8E-13 91.3 6.1 100 276-376 2-115 (117)
103 PRK09328 N5-glutamine S-adenos 98.8 1.3E-07 2.9E-12 96.4 15.0 117 255-376 93-238 (275)
104 KOG3045 Predicted RNA methylas 98.7 4.6E-08 1E-12 98.1 10.1 85 273-376 179-264 (325)
105 PRK14966 unknown domain/N5-glu 98.7 1.9E-07 4.2E-12 100.8 15.5 116 254-376 237-381 (423)
106 PRK13256 thiopurine S-methyltr 98.7 8.8E-08 1.9E-12 96.0 12.0 104 274-377 43-164 (226)
107 PLN02232 ubiquinone biosynthes 98.7 3.6E-08 7.7E-13 93.5 8.1 79 298-377 1-82 (160)
108 PF05219 DREV: DREV methyltran 98.7 9.7E-08 2.1E-12 96.6 10.7 93 274-376 94-188 (265)
109 PRK00811 spermidine synthase; 98.7 2.2E-07 4.8E-12 96.2 13.6 103 273-376 75-191 (283)
110 COG4123 Predicted O-methyltran 98.7 1.6E-07 3.4E-12 95.0 12.0 103 274-377 44-171 (248)
111 PF03291 Pox_MCEL: mRNA cappin 98.7 7.8E-08 1.7E-12 101.6 10.1 104 274-377 62-187 (331)
112 PTZ00146 fibrillarin; Provisio 98.7 6.4E-08 1.4E-12 100.1 9.1 98 273-375 131-236 (293)
113 TIGR03533 L3_gln_methyl protei 98.7 4.5E-07 9.7E-12 94.0 15.4 101 274-376 121-251 (284)
114 TIGR00536 hemK_fam HemK family 98.7 3.6E-07 7.8E-12 94.5 14.6 117 255-376 98-244 (284)
115 PRK10901 16S rRNA methyltransf 98.7 2.7E-07 5.8E-12 100.9 14.2 104 273-377 243-373 (427)
116 smart00650 rADc Ribosomal RNA 98.6 1.5E-07 3.3E-12 89.6 8.9 106 260-375 3-112 (169)
117 TIGR03704 PrmC_rel_meth putati 98.6 9.3E-07 2E-11 90.0 15.1 117 254-376 69-216 (251)
118 KOG1975 mRNA cap methyltransfe 98.6 1.1E-07 2.4E-12 98.0 7.4 105 273-377 116-238 (389)
119 PRK11805 N5-glutamine S-adenos 98.6 1.2E-06 2.6E-11 91.8 15.1 99 276-376 135-263 (307)
120 PRK13943 protein-L-isoaspartat 98.5 4.9E-07 1.1E-11 95.2 11.7 106 259-376 69-180 (322)
121 PRK14901 16S rRNA methyltransf 98.5 7.9E-07 1.7E-11 97.4 13.6 104 273-377 251-385 (434)
122 TIGR00563 rsmB ribosomal RNA s 98.5 7.8E-07 1.7E-11 97.2 13.5 104 273-377 237-369 (426)
123 PRK04457 spermidine synthase; 98.5 5.8E-07 1.2E-11 92.1 11.1 117 257-376 52-177 (262)
124 TIGR00446 nop2p NOL1/NOP2/sun 98.5 7.4E-07 1.6E-11 91.3 11.9 104 273-377 70-200 (264)
125 TIGR00417 speE spermidine synt 98.5 1.8E-06 3.8E-11 88.8 14.4 103 273-376 71-186 (270)
126 PRK14903 16S rRNA methyltransf 98.5 7.9E-07 1.7E-11 97.3 12.3 104 273-377 236-367 (431)
127 PRK14904 16S rRNA methyltransf 98.5 6.3E-07 1.4E-11 98.5 11.2 103 273-377 249-378 (445)
128 COG2890 HemK Methylase of poly 98.5 2.5E-06 5.4E-11 88.4 14.8 109 277-389 113-249 (280)
129 PF01135 PCMT: Protein-L-isoas 98.4 7.3E-07 1.6E-11 88.5 9.2 108 256-376 58-172 (209)
130 PF02390 Methyltransf_4: Putat 98.4 6E-07 1.3E-11 88.1 8.5 100 276-377 19-134 (195)
131 PRK01544 bifunctional N5-gluta 98.4 1.2E-06 2.7E-11 97.6 12.1 100 275-376 139-269 (506)
132 PHA03411 putative methyltransf 98.4 7.4E-07 1.6E-11 91.5 9.2 96 274-375 64-182 (279)
133 PRK14902 16S rRNA methyltransf 98.4 2.2E-06 4.8E-11 94.1 13.3 103 273-377 249-380 (444)
134 COG2242 CobL Precorrin-6B meth 98.4 8.9E-06 1.9E-10 78.8 15.0 97 273-376 33-135 (187)
135 PLN02366 spermidine synthase 98.4 4.3E-06 9.2E-11 87.7 13.7 103 273-376 90-206 (308)
136 PRK01581 speE spermidine synth 98.3 3.8E-06 8.2E-11 89.4 12.4 130 244-376 121-268 (374)
137 PRK03612 spermidine synthase; 98.3 3.8E-06 8.3E-11 94.1 12.9 103 273-376 296-415 (521)
138 PRK13168 rumA 23S rRNA m(5)U19 98.3 2.4E-06 5.1E-11 93.9 11.0 112 256-377 283-401 (443)
139 PF00891 Methyltransf_2: O-met 98.3 1.4E-06 3E-11 87.5 8.1 95 273-377 99-200 (241)
140 PF05724 TPMT: Thiopurine S-me 98.3 4E-06 8.6E-11 83.8 11.2 99 273-375 36-154 (218)
141 PF06080 DUF938: Protein of un 98.3 3.2E-06 6.8E-11 83.3 10.1 117 254-377 10-142 (204)
142 COG2518 Pcm Protein-L-isoaspar 98.3 4.2E-06 9.2E-11 82.5 10.7 105 259-376 61-169 (209)
143 PHA03412 putative methyltransf 98.3 2.7E-06 5.8E-11 85.7 8.9 92 275-372 50-159 (241)
144 PRK10909 rsmD 16S rRNA m(2)G96 98.3 5.1E-06 1.1E-10 81.9 10.6 120 252-377 34-160 (199)
145 PRK03522 rumB 23S rRNA methylu 98.3 4.2E-06 9.1E-11 87.9 10.4 99 274-377 173-275 (315)
146 PRK15128 23S rRNA m(5)C1962 me 98.3 1.2E-05 2.6E-10 87.1 14.2 114 274-388 220-351 (396)
147 COG0220 Predicted S-adenosylme 98.3 3.1E-06 6.8E-11 85.0 8.9 99 276-376 50-164 (227)
148 PF05891 Methyltransf_PK: AdoM 98.3 1.7E-06 3.6E-11 85.7 6.8 103 274-376 55-161 (218)
149 PLN02781 Probable caffeoyl-CoA 98.2 7.1E-06 1.5E-10 82.7 10.6 98 274-376 68-178 (234)
150 PF01739 CheR: CheR methyltran 98.2 1E-06 2.2E-11 86.6 3.8 103 274-376 31-175 (196)
151 PRK11783 rlmL 23S rRNA m(2)G24 98.2 6.7E-06 1.5E-10 95.3 11.0 102 275-377 539-657 (702)
152 COG0500 SmtA SAM-dependent met 98.2 1.5E-05 3.2E-10 68.9 10.5 97 278-377 52-156 (257)
153 PRK10611 chemotaxis methyltran 98.1 3.1E-06 6.7E-11 87.8 6.3 101 275-375 116-261 (287)
154 COG2519 GCD14 tRNA(1-methylade 98.1 5.2E-05 1.1E-09 76.7 14.6 97 273-377 93-196 (256)
155 TIGR00478 tly hemolysin TlyA f 98.1 1.3E-05 2.8E-10 80.7 10.3 89 273-376 74-171 (228)
156 KOG2899 Predicted methyltransf 98.1 7.1E-06 1.5E-10 82.0 6.5 101 274-375 58-208 (288)
157 TIGR00479 rumA 23S rRNA (uraci 98.0 1.9E-05 4.1E-10 86.4 10.1 99 273-376 291-396 (431)
158 PRK11727 23S rRNA mA1618 methy 98.0 5.5E-05 1.2E-09 79.8 12.9 99 253-351 89-202 (321)
159 PRK01544 bifunctional N5-gluta 98.0 1.9E-05 4.2E-10 88.2 8.9 103 272-376 345-462 (506)
160 KOG1331 Predicted methyltransf 98.0 5.7E-06 1.2E-10 84.6 3.7 97 274-376 45-143 (293)
161 COG4122 Predicted O-methyltran 97.9 4.3E-05 9.4E-10 76.2 9.5 98 274-376 59-166 (219)
162 PRK14896 ksgA 16S ribosomal RN 97.9 3.1E-05 6.7E-10 79.1 8.4 87 256-351 15-103 (258)
163 PF02527 GidB: rRNA small subu 97.9 0.00023 5E-09 69.4 14.0 125 256-389 29-159 (184)
164 PRK00274 ksgA 16S ribosomal RN 97.9 2.4E-05 5.3E-10 80.5 7.6 83 257-346 29-113 (272)
165 PF05185 PRMT5: PRMT5 arginine 97.9 4.6E-05 9.9E-10 83.9 10.0 116 255-373 163-294 (448)
166 TIGR02085 meth_trns_rumB 23S r 97.9 5.7E-05 1.2E-09 81.4 10.5 99 274-377 233-335 (374)
167 KOG1499 Protein arginine N-met 97.9 1.8E-05 3.9E-10 83.1 6.1 100 274-375 60-166 (346)
168 COG1352 CheR Methylase of chem 97.9 6.9E-05 1.5E-09 77.1 10.1 102 274-375 96-240 (268)
169 PLN02672 methionine S-methyltr 97.9 8.1E-05 1.8E-09 89.0 12.0 110 275-387 119-287 (1082)
170 PLN02476 O-methyltransferase 97.8 6E-05 1.3E-09 77.9 9.1 98 274-376 118-228 (278)
171 TIGR00755 ksgA dimethyladenosi 97.8 0.00012 2.5E-09 74.6 10.6 82 257-346 16-102 (253)
172 PF01596 Methyltransf_3: O-met 97.8 7.3E-05 1.6E-09 74.1 8.8 98 274-376 45-155 (205)
173 KOG2904 Predicted methyltransf 97.8 0.00029 6.3E-09 71.9 13.1 133 254-390 129-298 (328)
174 COG1041 Predicted DNA modifica 97.8 7.7E-05 1.7E-09 78.7 9.3 104 273-377 196-311 (347)
175 PF07942 N2227: N2227-like pro 97.8 8.2E-05 1.8E-09 76.5 9.0 119 256-377 38-203 (270)
176 COG0421 SpeE Spermidine syntha 97.8 0.00019 4.2E-09 74.4 11.8 129 258-393 61-207 (282)
177 PF10294 Methyltransf_16: Puta 97.7 0.0001 2.2E-09 71.0 8.1 102 273-377 44-157 (173)
178 PRK04148 hypothetical protein; 97.7 0.00012 2.7E-09 67.6 8.2 102 259-377 5-110 (134)
179 PLN02823 spermine synthase 97.7 0.00047 1E-08 73.3 13.7 103 273-376 102-220 (336)
180 PF08704 GCD14: tRNA methyltra 97.7 0.00041 8.9E-09 70.6 12.5 99 272-377 38-147 (247)
181 PTZ00338 dimethyladenosine tra 97.7 0.00012 2.6E-09 76.4 8.4 88 257-351 23-113 (294)
182 PF12147 Methyltransf_20: Puta 97.6 0.0012 2.5E-08 68.3 14.4 147 272-432 133-293 (311)
183 TIGR00095 RNA methyltransferas 97.6 0.00079 1.7E-08 65.8 12.7 116 255-376 33-159 (189)
184 COG2263 Predicted RNA methylas 97.6 0.00054 1.2E-08 66.7 10.9 89 274-366 45-137 (198)
185 PRK04338 N(2),N(2)-dimethylgua 97.6 0.00018 3.9E-09 77.7 8.6 96 275-376 58-158 (382)
186 KOG1269 SAM-dependent methyltr 97.6 8.8E-05 1.9E-09 79.5 6.0 101 274-376 110-215 (364)
187 KOG3987 Uncharacterized conser 97.6 4.7E-05 1E-09 74.6 3.1 120 244-375 84-206 (288)
188 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.5 0.00021 4.6E-09 73.0 7.8 104 273-376 55-199 (256)
189 COG3963 Phospholipid N-methylt 97.5 0.00044 9.6E-09 65.9 9.3 113 255-376 33-156 (194)
190 PRK11933 yebU rRNA (cytosine-C 97.5 0.00094 2E-08 74.0 12.6 102 273-376 112-242 (470)
191 PLN02589 caffeoyl-CoA O-methyl 97.5 0.00033 7.2E-09 71.4 8.2 98 274-376 79-190 (247)
192 PRK00536 speE spermidine synth 97.5 0.0015 3.1E-08 67.2 12.9 95 273-376 71-171 (262)
193 KOG1661 Protein-L-isoaspartate 97.5 0.00044 9.5E-09 68.2 8.3 96 273-376 81-193 (237)
194 KOG3191 Predicted N6-DNA-methy 97.4 0.0017 3.7E-08 62.7 11.4 111 274-387 43-178 (209)
195 KOG3178 Hydroxyindole-O-methyl 97.4 0.00044 9.6E-09 72.9 7.7 97 274-377 177-276 (342)
196 KOG2352 Predicted spermine/spe 97.3 0.00089 1.9E-08 73.3 9.8 100 277-377 51-162 (482)
197 PF01728 FtsJ: FtsJ-like methy 97.3 0.0015 3.3E-08 62.6 10.5 121 259-388 9-150 (181)
198 PF02475 Met_10: Met-10+ like- 97.3 0.001 2.2E-08 65.8 9.2 122 239-373 72-199 (200)
199 COG2521 Predicted archaeal met 97.3 0.00032 7E-09 70.1 5.3 99 273-376 133-245 (287)
200 PF01170 UPF0020: Putative RNA 97.3 0.00084 1.8E-08 65.0 7.9 102 273-375 27-150 (179)
201 PF01564 Spermine_synth: Sperm 97.3 0.0017 3.7E-08 66.1 10.5 103 273-376 75-191 (246)
202 PF09243 Rsm22: Mitochondrial 97.3 0.002 4.3E-08 66.6 11.1 112 257-377 20-140 (274)
203 PF11968 DUF3321: Putative met 97.2 0.0018 3.8E-08 64.4 9.7 86 275-376 52-149 (219)
204 TIGR03439 methyl_EasF probable 97.2 0.0038 8.2E-08 66.0 12.7 116 274-390 76-210 (319)
205 COG0293 FtsJ 23S rRNA methylas 97.2 0.0069 1.5E-07 59.9 13.2 113 255-381 29-164 (205)
206 PRK11760 putative 23S rRNA C24 97.1 0.01 2.2E-07 63.0 14.9 108 273-393 210-323 (357)
207 PRK05031 tRNA (uracil-5-)-meth 97.1 0.0018 3.8E-08 69.6 9.2 96 276-378 208-322 (362)
208 TIGR02143 trmA_only tRNA (urac 97.1 0.0012 2.6E-08 70.7 7.6 95 276-377 199-312 (353)
209 KOG1500 Protein arginine N-met 97.1 0.0019 4.2E-08 67.5 8.7 100 273-375 176-281 (517)
210 COG1092 Predicted SAM-dependen 97.1 0.0042 9.1E-08 67.3 11.4 112 275-387 218-347 (393)
211 PF02384 N6_Mtase: N-6 DNA Met 97.0 0.0017 3.8E-08 67.7 7.8 117 256-377 32-184 (311)
212 KOG1663 O-methyltransferase [S 97.0 0.0042 9.1E-08 62.2 9.5 98 274-376 73-183 (237)
213 COG2265 TrmA SAM-dependent met 96.9 0.0045 9.7E-08 68.0 10.3 132 239-377 260-397 (432)
214 PF03602 Cons_hypoth95: Conser 96.9 0.0021 4.6E-08 62.5 6.9 135 238-377 9-154 (183)
215 COG0030 KsgA Dimethyladenosine 96.9 0.0031 6.7E-08 64.6 8.2 83 258-346 18-103 (259)
216 COG0357 GidB Predicted S-adeno 96.9 0.011 2.5E-07 58.9 11.8 116 254-375 46-167 (215)
217 COG0742 N6-adenine-specific me 96.8 0.012 2.6E-07 57.5 10.8 136 238-377 10-155 (187)
218 PF10672 Methyltrans_SAM: S-ad 96.8 0.0068 1.5E-07 63.1 9.7 102 275-377 124-239 (286)
219 KOG3420 Predicted RNA methylas 96.7 0.003 6.5E-08 59.0 5.4 87 256-347 34-123 (185)
220 TIGR02987 met_A_Alw26 type II 96.5 0.013 2.8E-07 66.0 10.6 76 274-349 31-123 (524)
221 KOG0820 Ribosomal RNA adenine 96.5 0.013 2.8E-07 60.1 8.9 85 257-351 45-135 (315)
222 KOG2915 tRNA(1-methyladenosine 96.4 0.035 7.7E-07 57.0 11.7 106 259-375 94-208 (314)
223 TIGR00308 TRM1 tRNA(guanine-26 96.3 0.011 2.4E-07 63.8 8.0 94 276-375 46-146 (374)
224 COG1189 Predicted rRNA methyla 96.2 0.025 5.5E-07 57.0 9.3 96 272-377 77-179 (245)
225 KOG1709 Guanidinoacetate methy 96.2 0.019 4E-07 57.1 8.0 111 257-375 89-205 (271)
226 COG2520 Predicted methyltransf 96.1 0.031 6.7E-07 59.5 10.1 118 248-377 168-290 (341)
227 PF13679 Methyltransf_32: Meth 96.1 0.039 8.4E-07 51.1 9.2 94 273-375 24-130 (141)
228 PF05958 tRNA_U5-meth_tr: tRNA 96.0 0.01 2.2E-07 63.6 5.7 60 257-322 184-245 (352)
229 PF01269 Fibrillarin: Fibrilla 95.9 0.037 8E-07 55.5 8.8 99 272-376 71-178 (229)
230 PRK00050 16S rRNA m(4)C1402 me 95.8 0.0099 2.2E-07 62.2 4.8 82 259-346 8-98 (296)
231 COG4627 Uncharacterized protei 95.8 0.0019 4.1E-08 60.9 -0.6 49 329-377 38-87 (185)
232 COG0144 Sun tRNA and rRNA cyto 95.7 0.17 3.7E-06 54.3 13.7 104 272-376 154-288 (355)
233 KOG2798 Putative trehalase [Ca 95.5 0.027 5.8E-07 58.9 6.3 122 255-377 131-297 (369)
234 PF08123 DOT1: Histone methyla 95.5 0.029 6.4E-07 55.7 6.4 116 255-377 27-158 (205)
235 PLN02668 indole-3-acetate carb 95.4 0.042 9.1E-07 59.5 7.8 79 275-354 64-177 (386)
236 PF00398 RrnaAD: Ribosomal RNA 95.3 0.034 7.4E-07 56.9 6.2 104 255-368 15-123 (262)
237 COG3897 Predicted methyltransf 95.2 0.053 1.2E-06 53.3 6.9 105 273-383 78-185 (218)
238 COG5459 Predicted rRNA methyla 95.0 0.1 2.2E-06 55.4 8.8 116 257-377 100-226 (484)
239 PRK11783 rlmL 23S rRNA m(2)G24 95.0 0.096 2.1E-06 61.2 9.5 102 274-376 190-347 (702)
240 PF13578 Methyltransf_24: Meth 94.3 0.012 2.5E-07 51.4 -0.2 93 279-375 1-104 (106)
241 KOG3115 Methyltransferase-like 94.0 0.11 2.4E-06 51.4 6.0 30 276-305 62-95 (249)
242 PF01189 Nol1_Nop2_Fmu: NOL1/N 93.9 0.15 3.2E-06 53.0 7.2 103 273-376 84-219 (283)
243 COG4262 Predicted spermidine s 93.9 0.24 5.1E-06 53.0 8.4 131 243-376 259-407 (508)
244 COG1064 AdhP Zn-dependent alco 93.9 0.18 3.9E-06 53.7 7.7 93 273-378 165-261 (339)
245 PF03492 Methyltransf_7: SAM d 93.8 0.25 5.5E-06 52.6 8.8 80 273-353 15-121 (334)
246 PF04672 Methyltransf_19: S-ad 93.8 0.36 7.8E-06 49.8 9.4 101 274-377 68-191 (267)
247 KOG3201 Uncharacterized conser 93.2 0.16 3.5E-06 48.6 5.4 107 274-383 29-147 (201)
248 PF09445 Methyltransf_15: RNA 92.6 0.23 5E-06 47.6 5.6 70 276-346 1-77 (163)
249 COG0116 Predicted N6-adenine-s 92.5 0.67 1.5E-05 50.1 9.6 103 274-377 191-345 (381)
250 TIGR01444 fkbM_fam methyltrans 92.2 0.14 3.1E-06 46.6 3.6 37 277-313 1-41 (143)
251 COG4076 Predicted RNA methylas 92.2 0.15 3.3E-06 49.9 3.8 93 276-375 34-134 (252)
252 COG1889 NOP1 Fibrillarin-like 92.1 0.79 1.7E-05 45.5 8.7 98 272-375 74-179 (231)
253 PF05971 Methyltransf_10: Prot 92.1 0.58 1.3E-05 49.1 8.3 98 254-351 81-190 (299)
254 KOG1122 tRNA and rRNA cytosine 92.1 1.3 2.9E-05 48.2 11.1 104 272-377 239-372 (460)
255 PF04816 DUF633: Family of unk 92.0 0.68 1.5E-05 46.0 8.4 103 278-388 1-110 (205)
256 PF03059 NAS: Nicotianamine sy 91.7 0.76 1.7E-05 47.7 8.6 102 274-376 120-230 (276)
257 KOG0822 Protein kinase inhibit 91.6 0.34 7.5E-06 53.9 6.2 100 275-375 368-477 (649)
258 KOG4589 Cell division protein 91.4 1.4 2.9E-05 43.4 9.3 92 272-376 67-184 (232)
259 COG4798 Predicted methyltransf 91.0 0.86 1.9E-05 45.0 7.6 101 273-377 47-167 (238)
260 KOG2187 tRNA uracil-5-methyltr 90.7 0.28 6.1E-06 54.5 4.5 81 239-322 350-432 (534)
261 PF07757 AdoMet_MTase: Predict 89.6 0.39 8.4E-06 43.0 3.6 31 273-303 57-89 (112)
262 PF06859 Bin3: Bicoid-interact 89.1 0.2 4.3E-06 44.9 1.5 39 338-376 1-44 (110)
263 PF06962 rRNA_methylase: Putat 88.7 2.2 4.8E-05 40.0 8.1 85 296-381 1-97 (140)
264 KOG2539 Mitochondrial/chloropl 88.0 1.2 2.7E-05 49.0 6.9 117 273-389 199-328 (491)
265 COG2384 Predicted SAM-dependen 87.9 8.6 0.00019 38.7 12.1 118 258-388 6-129 (226)
266 KOG2920 Predicted methyltransf 87.9 0.17 3.7E-06 52.4 0.3 38 338-376 196-234 (282)
267 PF07091 FmrO: Ribosomal RNA m 86.5 2.5 5.5E-05 43.2 7.7 73 273-347 104-180 (251)
268 PF03269 DUF268: Caenorhabditi 83.7 0.84 1.8E-05 43.8 2.6 42 336-377 61-112 (177)
269 PRK09880 L-idonate 5-dehydroge 83.6 4 8.6E-05 42.9 8.0 91 274-376 169-266 (343)
270 KOG1596 Fibrillarin and relate 83.5 4.1 8.8E-05 41.6 7.4 112 257-376 140-261 (317)
271 PRK09424 pntA NAD(P) transhydr 83.1 4.7 0.0001 45.5 8.7 99 273-377 163-286 (509)
272 cd08283 FDH_like_1 Glutathione 82.6 4.7 0.0001 43.3 8.3 98 273-376 183-306 (386)
273 KOG1099 SAM-dependent methyltr 82.2 1.8 3.9E-05 43.8 4.4 92 275-377 42-164 (294)
274 COG3129 Predicted SAM-dependen 82.1 3.2 6.8E-05 42.2 6.1 110 241-350 42-165 (292)
275 PF03514 GRAS: GRAS domain fam 81.8 17 0.00038 39.3 12.2 103 273-375 109-243 (374)
276 COG1063 Tdh Threonine dehydrog 81.8 5.4 0.00012 42.6 8.2 91 275-377 169-270 (350)
277 cd08254 hydroxyacyl_CoA_DH 6-h 81.3 4.8 0.0001 41.5 7.5 91 273-376 164-263 (338)
278 COG4301 Uncharacterized conser 80.5 19 0.0004 37.2 10.9 100 275-376 79-193 (321)
279 KOG2793 Putative N2,N2-dimethy 79.7 9.8 0.00021 39.0 8.9 103 274-377 86-200 (248)
280 PRK11524 putative methyltransf 78.8 1.9 4.2E-05 44.7 3.6 43 334-376 23-80 (284)
281 PRK13699 putative methylase; P 78.5 5.5 0.00012 40.1 6.6 42 334-375 16-71 (227)
282 PF04989 CmcI: Cephalosporin h 78.3 4.5 9.7E-05 40.3 5.7 97 274-376 32-147 (206)
283 COG1565 Uncharacterized conser 77.8 3.6 7.9E-05 44.2 5.2 67 236-306 43-121 (370)
284 COG0286 HsdM Type I restrictio 76.7 26 0.00057 39.4 12.0 116 256-376 172-326 (489)
285 PF10354 DUF2431: Domain of un 76.5 10 0.00022 36.4 7.5 93 281-376 3-125 (166)
286 KOG2198 tRNA cytosine-5-methyl 76.5 9.3 0.0002 41.2 7.8 119 258-377 138-297 (375)
287 KOG1924 RhoA GTPase effector D 75.8 3.7 8E-05 47.8 4.9 7 521-527 1029-1035(1102)
288 KOG1562 Spermidine synthase [A 75.7 8.8 0.00019 40.4 7.2 102 273-376 120-236 (337)
289 PF02636 Methyltransf_28: Puta 74.1 5.5 0.00012 40.4 5.3 33 275-307 19-63 (252)
290 PF01861 DUF43: Protein of unk 72.7 47 0.001 34.0 11.4 98 274-375 44-148 (243)
291 TIGR00006 S-adenosyl-methyltra 69.8 12 0.00026 39.5 6.8 84 258-346 8-100 (305)
292 TIGR02822 adh_fam_2 zinc-bindi 69.4 22 0.00047 37.3 8.7 88 273-377 164-255 (329)
293 KOG0024 Sorbitol dehydrogenase 68.6 24 0.00053 37.6 8.6 92 273-376 168-273 (354)
294 PRK10742 putative methyltransf 67.2 14 0.0003 38.0 6.3 31 277-307 91-123 (250)
295 cd08230 glucose_DH Glucose deh 65.9 22 0.00047 37.5 7.9 93 274-377 172-270 (355)
296 cd05188 MDR Medium chain reduc 65.7 18 0.00039 35.4 6.9 91 273-376 133-232 (271)
297 KOG2651 rRNA adenine N-6-methy 65.7 7.4 0.00016 42.2 4.2 49 259-307 138-189 (476)
298 PF00107 ADH_zinc_N: Zinc-bind 64.6 8.7 0.00019 34.0 4.0 81 284-377 1-90 (130)
299 TIGR00561 pntA NAD(P) transhyd 64.4 11 0.00025 42.5 5.6 94 274-373 163-281 (511)
300 cd08245 CAD Cinnamyl alcohol d 63.9 28 0.00061 35.8 8.2 92 273-376 161-256 (330)
301 PLN02586 probable cinnamyl alc 63.6 20 0.00043 38.1 7.1 92 274-376 183-278 (360)
302 cd08237 ribitol-5-phosphate_DH 63.1 26 0.00056 36.9 7.8 90 273-377 162-257 (341)
303 KOG2730 Methylase [General fun 62.7 8.6 0.00019 38.9 3.8 50 255-307 78-129 (263)
304 KOG1924 RhoA GTPase effector D 62.4 7.5 0.00016 45.4 3.7 14 301-314 724-737 (1102)
305 cd08232 idonate-5-DH L-idonate 61.7 29 0.00063 35.9 7.9 91 274-376 165-262 (339)
306 TIGR03366 HpnZ_proposed putati 61.6 24 0.00051 35.9 7.0 91 274-376 120-218 (280)
307 cd00401 AdoHcyase S-adenosyl-L 61.2 30 0.00066 38.1 8.1 86 273-377 200-290 (413)
308 TIGR02825 B4_12hDH leukotriene 61.0 38 0.00082 35.0 8.5 91 273-376 137-237 (325)
309 PTZ00357 methyltransferase; Pr 60.6 34 0.00075 40.0 8.4 95 276-371 702-830 (1072)
310 PF02005 TRM: N2,N2-dimethylgu 60.2 21 0.00045 38.9 6.5 96 275-376 50-154 (377)
311 TIGR01202 bchC 2-desacetyl-2-h 60.1 25 0.00054 36.4 7.0 83 275-377 145-232 (308)
312 KOG1501 Arginine N-methyltrans 60.0 20 0.00043 39.7 6.2 44 276-320 68-114 (636)
313 PF01555 N6_N4_Mtase: DNA meth 60.0 13 0.00029 35.8 4.6 47 256-307 178-226 (231)
314 TIGR03451 mycoS_dep_FDH mycoth 59.8 33 0.00072 36.2 8.0 92 273-377 175-277 (358)
315 cd08281 liver_ADH_like1 Zinc-d 59.4 27 0.00059 37.1 7.3 91 273-376 190-290 (371)
316 PHA01634 hypothetical protein 58.7 25 0.00054 32.8 5.7 66 274-344 28-98 (156)
317 cd00315 Cyt_C5_DNA_methylase C 58.6 13 0.00028 38.4 4.4 64 277-346 2-70 (275)
318 cd08234 threonine_DH_like L-th 58.5 46 0.001 34.2 8.6 91 273-376 158-257 (334)
319 PLN03154 putative allyl alcoho 57.8 38 0.00081 35.9 7.9 91 273-376 157-258 (348)
320 COG1867 TRM1 N2,N2-dimethylgua 56.0 31 0.00067 37.4 6.8 97 275-376 53-154 (380)
321 cd08239 THR_DH_like L-threonin 55.1 39 0.00086 35.0 7.5 92 273-376 162-262 (339)
322 PRK11524 putative methyltransf 55.0 33 0.00071 35.6 6.8 47 256-307 195-243 (284)
323 PRK01747 mnmC bifunctional tRN 54.6 31 0.00067 40.1 7.2 39 337-375 165-205 (662)
324 PRK13699 putative methylase; P 53.3 34 0.00073 34.4 6.3 47 257-308 151-199 (227)
325 KOG4058 Uncharacterized conser 52.8 99 0.0021 29.6 8.7 52 256-311 58-112 (199)
326 KOG1227 Putative methyltransfe 52.3 17 0.00038 38.3 4.1 117 242-371 168-290 (351)
327 PLN02740 Alcohol dehydrogenase 51.8 50 0.0011 35.3 7.8 92 273-376 197-300 (381)
328 PLN02827 Alcohol dehydrogenase 51.7 44 0.00095 35.8 7.3 92 273-376 192-295 (378)
329 COG2933 Predicted SAM-dependen 51.5 81 0.0018 32.9 8.6 84 273-368 210-295 (358)
330 TIGR03201 dearomat_had 6-hydro 51.4 47 0.001 34.9 7.4 93 273-377 165-273 (349)
331 cd08255 2-desacetyl-2-hydroxye 50.6 60 0.0013 32.4 7.8 90 273-376 96-190 (277)
332 PF11312 DUF3115: Protein of u 49.7 41 0.00088 35.7 6.4 25 356-380 222-246 (315)
333 PLN02178 cinnamyl-alcohol dehy 47.7 49 0.0011 35.5 6.9 93 274-377 178-274 (375)
334 TIGR00027 mthyl_TIGR00027 meth 46.7 3.4E+02 0.0074 27.8 15.9 102 275-376 82-197 (260)
335 PF01690 PLRV_ORF5: Potato lea 46.3 17 0.00036 40.4 3.0 51 114-164 50-109 (465)
336 cd08294 leukotriene_B4_DH_like 45.9 79 0.0017 32.3 7.9 90 273-376 142-241 (329)
337 cd08295 double_bond_reductase_ 44.0 84 0.0018 32.7 7.9 91 273-376 150-251 (338)
338 PF10237 N6-adenineMlase: Prob 43.9 2.4E+02 0.0052 27.0 10.2 91 274-376 25-123 (162)
339 PRK10309 galactitol-1-phosphat 43.7 80 0.0017 32.9 7.7 93 273-377 159-261 (347)
340 KOG1253 tRNA methyltransferase 42.5 22 0.00048 39.8 3.3 97 274-376 109-216 (525)
341 PF04834 Adeno_E3_14_5: Early 41.8 81 0.0018 27.8 5.9 13 8-20 22-34 (97)
342 cd08261 Zn_ADH7 Alcohol dehydr 41.5 97 0.0021 32.0 7.9 92 273-376 158-258 (337)
343 COG5178 PRP8 U5 snRNP spliceos 41.1 21 0.00045 43.6 2.9 9 85-93 18-26 (2365)
344 COG0604 Qor NADPH:quinone redu 40.7 73 0.0016 33.7 6.8 92 273-377 141-242 (326)
345 cd08285 NADP_ADH NADP(H)-depen 39.7 1E+02 0.0022 32.2 7.7 91 273-376 165-266 (351)
346 cd05278 FDH_like Formaldehyde 39.0 96 0.0021 32.0 7.3 91 273-376 166-267 (347)
347 PRK15001 SAM-dependent 23S rib 39.0 2.4E+02 0.0052 30.8 10.5 92 277-376 47-142 (378)
348 PF05711 TylF: Macrocin-O-meth 38.5 3.2E+02 0.0068 28.1 10.7 44 330-376 168-212 (248)
349 cd08242 MDR_like Medium chain 38.3 1.3E+02 0.0029 30.6 8.2 88 273-376 154-245 (319)
350 PF04445 SAM_MT: Putative SAM- 37.9 65 0.0014 32.8 5.6 75 276-350 77-163 (234)
351 COG5178 PRP8 U5 snRNP spliceos 37.4 23 0.0005 43.2 2.5 6 91-96 20-25 (2365)
352 PLN02514 cinnamyl-alcohol dehy 37.2 1.1E+02 0.0024 32.4 7.6 92 274-376 180-275 (357)
353 KOG0023 Alcohol dehydrogenase, 37.1 31 0.00067 36.9 3.2 96 274-378 181-281 (360)
354 KOG1098 Putative SAM-dependent 36.3 32 0.0007 39.6 3.3 33 273-305 43-80 (780)
355 PRK13165 cytochrome c-type bio 36.0 40 0.00087 32.4 3.5 17 102-118 80-96 (160)
356 cd08236 sugar_DH NAD(P)-depend 35.5 1.4E+02 0.0031 30.8 8.0 92 273-376 158-258 (343)
357 TIGR02819 fdhA_non_GSH formald 35.0 1.5E+02 0.0033 32.0 8.4 98 273-377 184-300 (393)
358 TIGR02818 adh_III_F_hyde S-(hy 35.0 1.1E+02 0.0024 32.5 7.2 93 273-377 184-288 (368)
359 cd08298 CAD2 Cinnamyl alcohol 34.8 1.7E+02 0.0038 29.9 8.5 87 273-376 166-256 (329)
360 cd08300 alcohol_DH_class_III c 34.8 1.3E+02 0.0029 31.7 7.8 92 273-376 185-288 (368)
361 cd08277 liver_alcohol_DH_like 33.9 1.4E+02 0.003 31.6 7.7 92 273-376 183-286 (365)
362 COG3414 SgaB Phosphotransferas 33.9 3.2E+02 0.0069 23.8 8.9 54 277-345 3-56 (93)
363 cd05285 sorbitol_DH Sorbitol d 33.9 1.6E+02 0.0034 30.7 8.0 92 273-376 161-265 (343)
364 KOG2352 Predicted spermine/spe 33.6 1.7E+02 0.0036 33.0 8.2 104 273-376 294-416 (482)
365 PF05206 TRM13: Methyltransfer 33.0 35 0.00075 35.2 2.8 32 273-304 17-57 (259)
366 KOG2675 Adenylate cyclase-asso 32.8 45 0.00097 36.8 3.6 15 337-351 392-406 (480)
367 COG0686 Ald Alanine dehydrogen 32.4 1.1E+02 0.0023 32.8 6.2 97 274-375 167-267 (371)
368 cd08293 PTGR2 Prostaglandin re 32.2 1.4E+02 0.0029 31.0 7.2 88 275-376 155-254 (345)
369 COG0062 Uncharacterized conser 31.6 4.5E+02 0.0097 26.2 10.2 40 336-375 117-156 (203)
370 PRK13254 cytochrome c-type bio 31.4 41 0.00088 31.8 2.7 17 102-118 73-89 (148)
371 PF01795 Methyltransf_5: MraW 31.3 1.2E+02 0.0026 32.3 6.4 45 259-307 9-57 (310)
372 cd08231 MDR_TM0436_like Hypoth 31.1 2.3E+02 0.0049 29.7 8.7 90 274-376 177-280 (361)
373 PF11899 DUF3419: Protein of u 30.0 66 0.0014 35.1 4.4 41 335-376 292-334 (380)
374 PF01555 N6_N4_Mtase: DNA meth 29.7 33 0.00071 33.0 1.9 22 355-376 35-56 (231)
375 TIGR00692 tdh L-threonine 3-de 28.9 2.2E+02 0.0048 29.5 8.1 91 274-376 161-261 (340)
376 PRK06701 short chain dehydroge 28.5 2.8E+02 0.0061 28.3 8.7 30 275-304 46-80 (290)
377 cd08243 quinone_oxidoreductase 28.1 2.1E+02 0.0046 28.7 7.7 90 273-376 141-238 (320)
378 COG4889 Predicted helicase [Ge 28.1 6E+02 0.013 31.3 11.6 126 255-390 166-298 (1518)
379 TIGR00936 ahcY adenosylhomocys 27.8 1.3E+02 0.0029 33.1 6.4 85 274-377 194-283 (406)
380 PF14740 DUF4471: Domain of un 27.8 1.1E+02 0.0023 32.3 5.3 35 336-376 220-254 (289)
381 cd08263 Zn_ADH10 Alcohol dehyd 27.8 1.8E+02 0.0039 30.6 7.2 90 274-376 187-287 (367)
382 TIGR00518 alaDH alanine dehydr 27.3 76 0.0017 34.3 4.4 98 274-376 166-267 (370)
383 cd05281 TDH Threonine dehydrog 27.1 2.4E+02 0.0051 29.3 7.9 90 274-376 163-262 (341)
384 PRK05476 S-adenosyl-L-homocyst 27.1 1.2E+02 0.0027 33.5 6.0 85 274-377 211-300 (425)
385 cd05283 CAD1 Cinnamyl alcohol 26.1 2.1E+02 0.0045 29.7 7.3 90 274-376 169-263 (337)
386 COG0287 TyrA Prephenate dehydr 25.6 1.5E+02 0.0032 31.0 5.9 86 276-373 4-95 (279)
387 cd08279 Zn_ADH_class_III Class 25.1 3.1E+02 0.0066 28.8 8.5 92 273-376 181-282 (363)
388 cd08241 QOR1 Quinone oxidoredu 25.0 2.6E+02 0.0057 27.8 7.7 90 273-376 138-238 (323)
389 KOG2675 Adenylate cyclase-asso 24.9 58 0.0013 36.0 2.8 7 369-375 420-426 (480)
390 COG3510 CmcI Cephalosporin hyd 24.6 1.3E+02 0.0028 30.1 4.9 98 273-376 68-180 (237)
391 cd08301 alcohol_DH_plants Plan 24.4 2.3E+02 0.005 29.8 7.4 92 273-376 186-289 (369)
392 cd05564 PTS_IIB_chitobiose_lic 24.4 1.5E+02 0.0033 25.5 4.9 68 282-371 5-72 (96)
393 cd08278 benzyl_alcohol_DH Benz 24.3 2.4E+02 0.0051 29.8 7.4 92 273-376 185-285 (365)
394 PRK09548 PTS system ascorbate- 24.3 1.2E+02 0.0026 35.1 5.4 58 273-345 504-561 (602)
395 PF01213 CAP_N: Adenylate cycl 24.1 27 0.00059 37.0 0.2 6 25-30 198-203 (312)
396 PRK07502 cyclohexadienyl dehyd 24.1 2E+02 0.0043 29.9 6.6 87 275-374 6-98 (307)
397 COG4856 Uncharacterized protei 23.9 49 0.0011 35.9 2.0 28 1-28 1-28 (403)
398 cd08289 MDR_yhfp_like Yhfp put 23.9 2.7E+02 0.0059 28.3 7.6 90 275-377 147-244 (326)
399 PF05430 Methyltransf_30: S-ad 23.4 89 0.0019 28.5 3.4 39 337-375 49-89 (124)
400 cd08296 CAD_like Cinnamyl alco 22.9 3.2E+02 0.007 28.2 8.0 91 273-376 162-259 (333)
401 cd08246 crotonyl_coA_red croto 22.9 3.8E+02 0.0083 28.5 8.7 31 338-376 285-315 (393)
402 cd08274 MDR9 Medium chain dehy 22.7 3.2E+02 0.0069 28.1 7.9 89 273-376 176-273 (350)
403 PF07629 DUF1590: Protein of u 22.4 49 0.0011 22.6 1.1 19 183-201 5-23 (32)
404 cd08233 butanediol_DH_like (2R 22.2 2.8E+02 0.0061 28.8 7.4 92 273-376 171-272 (351)
405 COG0541 Ffh Signal recognition 21.7 3.1E+02 0.0067 30.6 7.6 103 273-377 98-222 (451)
406 COG1893 ApbA Ketopantoate redu 21.7 4.9E+02 0.011 27.4 9.0 107 276-392 1-116 (307)
407 cd08270 MDR4 Medium chain dehy 21.7 3.9E+02 0.0084 26.8 8.2 85 275-376 133-222 (305)
408 cd05289 MDR_like_2 alcohol deh 21.1 6E+02 0.013 25.0 9.3 89 273-376 143-238 (309)
409 PF02086 MethyltransfD12: D12 21.1 1E+02 0.0022 30.7 3.7 46 257-306 7-54 (260)
410 cd01842 SGNH_hydrolase_like_5 20.7 1.4E+02 0.0031 29.2 4.3 42 335-376 47-99 (183)
411 KOG4494 Cell surface ATP dipho 20.6 1.2E+02 0.0025 32.0 3.9 29 4-32 3-31 (352)
412 TIGR00853 pts-lac PTS system, 20.6 2.1E+02 0.0045 24.8 5.0 76 276-374 4-79 (95)
413 COG1255 Uncharacterized protei 20.4 2.4E+02 0.0052 25.9 5.3 82 276-375 15-101 (129)
414 KOG3397 Acetyltransferases [Ge 20.4 81 0.0018 30.8 2.5 7 36-42 127-133 (225)
415 KOG2530 Members of tubulin/Fts 20.1 82 0.0018 35.0 2.8 36 518-553 206-249 (483)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=8.2e-113 Score=908.52 Aligned_cols=411 Identities=60% Similarity=1.115 Sum_probs=389.1
Q ss_pred cccccCCcHHHHHhcccCccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCccccCCCCCccccccccCCCchhc
Q 008262 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISK 237 (572)
Q Consensus 158 ~y~pC~d~~~~~~~~~~~~~~~~~er~Cp~~~~~~~Clv~~P~~Y~~P~~wP~srd~~W~~nvp~~~L~~~k~~qnWv~~ 237 (572)
|||||+|+.++++++++++++||+|||||+.+++++||||+|++|+.|++||+|||++||+|+||+.|+++|+.||||+.
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHH
Q 008262 238 EKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALE 317 (572)
Q Consensus 238 ~g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~ 317 (572)
+|++|+|||||++|++|++.|+++|.++++.+..++..+++||+|||+|+|+++|++++|+++.+++.+.+++++|+|.+
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 99999999999999999999999999999865567888999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCC-CCHHHHHHHHHHHHhh
Q 008262 318 RGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVY-KHEEAQEEHWKEMLDL 396 (572)
Q Consensus 318 rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~-~tl~EL~~~w~~~e~~ 396 (572)
||+++++.....++|||++++||+|||+.|++.|..+...+|.|++|+|||||+|+++.+|++ .+.+++.+.|.+++++
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l 240 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDL 240 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHH
Confidence 999998887778999999999999999999999999889999999999999999999999999 7788999999999999
Q ss_pred hhhhchhhhhccCcEEEeeccchhHHHHHHhcCCCCCccCCCCCCccccCCCHHHHHhhcccC---CcCCCCCCCCCCCC
Q 008262 397 TTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPEN---GYGANVSLWPERLR 473 (572)
Q Consensus 397 ~~~l~w~~v~~~g~i~iw~kpl~~~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L~~L~~~---~~Ga~~~~wp~rl~ 473 (572)
++.+||+.+.++++++||+||.++.|+..++.+..+++|+.+++++.+||.+|++||+.+++. ..|.++.+||+||.
T Consensus 241 ~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~ 320 (506)
T PF03141_consen 241 AKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLN 320 (506)
T ss_pred HHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhc
Confidence 999999999999999999999999999999888899999988999999999999999999965 34557889999999
Q ss_pred CCHHHHHHHHHhHHHHHHHHhhhcchhHHHHHHHHHHhcc--CCCCcEEeeecccccchhHHHHhhcCCCCceeeeccCC
Q 008262 474 TSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALH--WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPV 551 (572)
Q Consensus 474 ~~p~rl~~~~~~~Y~~~~e~f~~d~~~w~~~v~~Y~~~l~--~~~~~~rnvmdm~a~~ggfaaal~~~~~~~wvmnvvp~ 551 (572)
+.|+||....+ .+...|.|.+|+++|+++|++|+++++ +++++|||||||||+||||||||++++ ||||||||+
T Consensus 321 ~~P~rl~~~~~--~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~ 396 (506)
T PF03141_consen 321 AVPPRLSSGSI--PGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDP--VWVMNVVPV 396 (506)
T ss_pred cCchhhhcCCc--CCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCC--ceEEEeccc
Confidence 99999987321 122369999999999999999999988 889999999999999999999999986 599999999
Q ss_pred CCCCCccceeccccccccccC
Q 008262 552 SGFNTLPVIYDRGLIGVMHDW 572 (572)
Q Consensus 552 ~~~~tl~~i~~rglig~~hdw 572 (572)
.++|||||||||||||+||||
T Consensus 397 ~~~ntL~vIydRGLIG~yhDW 417 (506)
T PF03141_consen 397 SGPNTLPVIYDRGLIGVYHDW 417 (506)
T ss_pred CCCCcchhhhhcccchhccch
Confidence 999999999999999999999
No 2
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.83 E-value=1.8e-21 Score=189.69 Aligned_cols=234 Identities=16% Similarity=0.162 Sum_probs=184.1
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
+++..++++.+-++ .+....++|||||.|...+.|..+ +++-+|.|..|+..+ +-+...++.....+.|.|.|
T Consensus 56 eeig~rlaDrvfD~--kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~--~~~qdp~i~~~~~v~DEE~L 131 (325)
T KOG2940|consen 56 EEIGDRLADRVFDC--KKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSC--RDAQDPSIETSYFVGDEEFL 131 (325)
T ss_pred HHHHHHHHHHHHHH--hhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHh--hccCCCceEEEEEecchhcc
Confidence 44555666666554 356678999999999999999887 788899999887443 22333445555667788999
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEE
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIA 412 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~ 412 (572)
+|.+++||+|+++. ..||.+|.+..+.+|...|||+|.|+.+.+ +.+++.||+-+.+-. .++..|++.
T Consensus 132 df~ens~DLiisSl-slHW~NdLPg~m~~ck~~lKPDg~Fiasml-ggdTLyELR~slqLA----------elER~GGiS 199 (325)
T KOG2940|consen 132 DFKENSVDLIISSL-SLHWTNDLPGSMIQCKLALKPDGLFIASML-GGDTLYELRCSLQLA----------ELEREGGIS 199 (325)
T ss_pred cccccchhhhhhhh-hhhhhccCchHHHHHHHhcCCCccchhHHh-ccccHHHHHHHhhHH----------HHHhccCCC
Confidence 99999999999885 499999999999999999999999999876 889999998765322 123444444
Q ss_pred Eeeccch---hHHHHHHhcCCCCCccCCCCCCccccCCCHHHHHhhcccCCcCCCCCCCCCCCCCCHHHHHHHHHhHHHH
Q 008262 413 IWKKPTN---NSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIA 489 (572)
Q Consensus 413 iw~kpl~---~~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L~~L~~~~~Ga~~~~wp~rl~~~p~rl~~~~~~~Y~~ 489 (572)
..-.|+. +.+.++.+|||..+.+| .+.+.+.|+.+.++|.+|+ ++|.+...|.+.....|..+.+.. ++|.
T Consensus 200 phiSPf~qvrDiG~LL~rAGF~m~tvD--tDEi~v~Yp~mfeLm~dLq--~MgEsn~~~~Rn~~l~Ret~vAaa-AiY~- 273 (325)
T KOG2940|consen 200 PHISPFTQVRDIGNLLTRAGFSMLTVD--TDEIVVGYPRMFELMEDLQ--GMGESNAALNRNAILNRETMVAAA-AIYQ- 273 (325)
T ss_pred CCcChhhhhhhhhhHHhhcCcccceec--ccceeecCchHHHHHHHHH--hhcccchhhccCccccHHHHHHHH-HHHH-
Confidence 4444543 57889999999999887 8889999999999999999 888877777777677888888877 7897
Q ss_pred HHHHhhhcchhHHHHHH-HHHHhcc
Q 008262 490 RKELFKAESKYWNEIIE-SYVRALH 513 (572)
Q Consensus 490 ~~e~f~~d~~~w~~~v~-~Y~~~l~ 513 (572)
+.|+.+++...+.++ .|..+|+
T Consensus 274 --smya~e~~~iPATfqiiy~iGWk 296 (325)
T KOG2940|consen 274 --SMYATEDGTIPATFQIIYMIGWK 296 (325)
T ss_pred --HHhcCCCCCcceeEEEEEEEccC
Confidence 899999998777766 5555554
No 3
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.83 E-value=1.5e-19 Score=182.34 Aligned_cols=199 Identities=21% Similarity=0.311 Sum_probs=141.2
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
+....+.+.+.++ ..+..+|||+|||+|.++..|... +|+++|+++.|+.. ++++.....+...|.+.+
T Consensus 27 q~~~a~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~-----a~~~~~~~~~~~~d~~~~ 97 (251)
T PRK10258 27 QRQSADALLAMLP----QRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQ-----ARQKDAADHYLAGDIESL 97 (251)
T ss_pred HHHHHHHHHHhcC----ccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHH-----HHhhCCCCCEEEcCcccC
Confidence 4455566666665 235678999999999999888765 89999999987743 333332223445678889
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEE
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIA 412 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~ 412 (572)
|+++++||+|+|+.+ +||..++..+|.++.|+|||||.++++++ +..+..|+++.|..++...+.. .
T Consensus 98 ~~~~~~fD~V~s~~~-l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~-~~~~~~el~~~~~~~~~~~~~~--~--------- 164 (251)
T PRK10258 98 PLATATFDLAWSNLA-VQWCGNLSTALRELYRVVRPGGVVAFTTL-VQGSLPELHQAWQAVDERPHAN--R--------- 164 (251)
T ss_pred cCCCCcEEEEEECch-hhhcCCHHHHHHHHHHHcCCCeEEEEEeC-CCCchHHHHHHHHHhccCCccc--c---------
Confidence 999999999998865 78889999999999999999999999985 7788899888886554321111 0
Q ss_pred EeeccchhHHHHHHhcCCCCCccCCCCCCccccCCCHHHHHhhcccCCcCCCCCCCCCCCCCCHHHHHHHH
Q 008262 413 IWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRTSPDRLQSIQ 483 (572)
Q Consensus 413 iw~kpl~~~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L~~L~~~~~Ga~~~~wp~rl~~~p~rl~~~~ 483 (572)
+. +..+...++++.++. + ..+..+..|.++.++|++||.+|+++....+.++ ..+|.+++++.
T Consensus 165 -~~-~~~~l~~~l~~~~~~---~--~~~~~~~~f~~~~~~l~~lk~~G~~~~~~~~~~~-~~~~~~~~~~~ 227 (251)
T PRK10258 165 -FL-PPDAIEQALNGWRYQ---H--HIQPITLWFDDALSAMRSLKGIGATHLHEGRDPR-ILTRSQLQRLQ 227 (251)
T ss_pred -CC-CHHHHHHHHHhCCce---e--eeeEEEEECCCHHHHHHHHHHhCCCCCCCCCCCC-CCcHHHHHHHH
Confidence 11 112334455555553 2 3677899999999999999954444323333333 66788887765
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=7.6e-16 Score=154.49 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=90.8
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~ 331 (572)
...+.+.+.+. ..++.+|||||||||.++..+++. +|+++|+|+.|+..+.... .+.+.. ..+...|++.
T Consensus 38 ~Wr~~~i~~~~----~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~-~~~~~~~i~fv~~dAe~ 112 (238)
T COG2226 38 LWRRALISLLG----IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKL-KKKGVQNVEFVVGDAEN 112 (238)
T ss_pred HHHHHHHHhhC----CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHh-hccCccceEEEEechhh
Confidence 34444555544 236799999999999999998876 7999999999996665333 232322 4456678999
Q ss_pred CCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|||+|++||+|.++.. ++...|.+.+|+|++|+|||||.+++..+
T Consensus 113 LPf~D~sFD~vt~~fg-lrnv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 113 LPFPDNSFDAVTISFG-LRNVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred CCCCCCccCEEEeeeh-hhcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 9999999999999987 55558999999999999999999988865
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.61 E-value=1.9e-15 Score=151.76 Aligned_cols=104 Identities=24% Similarity=0.352 Sum_probs=75.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
.++.+|||+|||||.++..++++ .|+++|+|+.|+..++............+...|++.||+++++||+|+|+..
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 45689999999999999888764 7999999999997776544433222455666789999999999999999987
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.+. +|...+|+|++|+|||||.+++.++
T Consensus 126 lrn~-~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 126 LRNF-PDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp GGG--SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhh-CCHHHHHHHHHHHcCCCeEEEEeec
Confidence 5555 8899999999999999999998864
No 6
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.60 E-value=2.3e-14 Score=141.57 Aligned_cols=180 Identities=17% Similarity=0.261 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e 330 (572)
+......+.+.+.... .....+|||||||+|.++..+++. +++++|+++.++..+..... ....+...|.+
T Consensus 16 q~~~~~~l~~~~~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~ 90 (240)
T TIGR02072 16 QREMAKRLLALLKEKG-IFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAE 90 (240)
T ss_pred HHHHHHHHHHHhhhhc-cCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchh
Confidence 3344555555555321 123478999999999998888765 68999999877643332111 12234556778
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCc
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGY 410 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~ 410 (572)
.+++++++||+|+++.+ +||..++..+|.++.++|||||.++++++ ......++...+... .. .
T Consensus 91 ~~~~~~~~fD~vi~~~~-l~~~~~~~~~l~~~~~~L~~~G~l~~~~~-~~~~~~~~~~~~~~~-----~~--~------- 154 (240)
T TIGR02072 91 KLPLEDSSFDLIVSNLA-LQWCDDLSQALSELARVLKPGGLLAFSTF-GPGTLHELRQSFGQH-----GL--R------- 154 (240)
T ss_pred hCCCCCCceeEEEEhhh-hhhccCHHHHHHHHHHHcCCCcEEEEEeC-CccCHHHHHHHHHHh-----cc--C-------
Confidence 88888899999999877 56668889999999999999999999974 566666555443210 00 0
Q ss_pred EEEeeccchhHHHHHHhcCCCCCccCCCCCCccccCCCHHHHHhhcccCCcC
Q 008262 411 IAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYG 462 (572)
Q Consensus 411 i~iw~kpl~~~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L~~L~~~~~G 462 (572)
+ .+..+...++.++ |....+. .......|.+...+++.++.+|.+
T Consensus 155 ---~-~~~~~~~~~l~~~-f~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~ 199 (240)
T TIGR02072 155 ---Y-LSLDELKALLKNS-FELLTLE--EELITLSFDDPLDVLRHLKKTGAN 199 (240)
T ss_pred ---C-CCHHHHHHHHHHh-cCCcEEE--EEEEEEeCCCHHHHHHHHHHhccC
Confidence 0 1122345566666 7665544 566778899999999999955543
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.58 E-value=3.5e-15 Score=125.90 Aligned_cols=90 Identities=27% Similarity=0.465 Sum_probs=70.4
Q ss_pred EEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEeccccccccC
Q 008262 279 MDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (572)
Q Consensus 279 LDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~ 353 (572)
||+|||+|.++..|++. +|+++|+++.++.. ++++.. ...+...+.+.+|+++++||+|+|..+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~-----~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQ-----ARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHH-----HHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHH-----HHhcccccCchheeehHHhCccccccccccccccceeec-c
Confidence 89999999999998876 79999999887643 333322 1225566789999999999999999886666 8
Q ss_pred ChHHHHHHHHHhccCCeEEEE
Q 008262 354 DDGILLLEVNRMLRAGGYFAW 374 (572)
Q Consensus 354 d~~~~L~ei~RvLKPGG~lv~ 374 (572)
+...+++|+.|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 889999999999999999986
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.53 E-value=1.3e-13 Score=140.99 Aligned_cols=113 Identities=17% Similarity=0.216 Sum_probs=86.3
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp 335 (572)
.+.+.+.+. ..+..+|||||||+|..+..|+.. +|+++|+++.++..+...... .....+...|...+|++
T Consensus 41 ~~~~l~~l~----l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~ 114 (263)
T PTZ00098 41 TTKILSDIE----LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDFP 114 (263)
T ss_pred HHHHHHhCC----CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCCC
Confidence 555666654 246689999999999988888653 799999999887554432221 11233445567788899
Q ss_pred CCCeeEEEeccccccccC-ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 336 SQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++||+|++..+++|+.. +...+|++++|+|||||+|+++..
T Consensus 115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999999888788753 678999999999999999999864
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.52 E-value=9.7e-14 Score=141.68 Aligned_cols=104 Identities=16% Similarity=0.152 Sum_probs=82.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHH--HHcCC-CcEEEeccccCCCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFA--LERGA-PAMVAAFATRRLPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A--~~rg~-~~~~~~~d~e~LPfp~~sFDlI~s 344 (572)
.+..+|||+|||+|.++..+++. +|+|+|+|+.|+..+..+.. ..... ...+...|.+.+|+++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 45689999999999988877653 79999999999976653322 11122 234556678999999999999999
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.+++++ .++..+|+|++|+|||||++++.+.
T Consensus 152 ~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 152 GYGLRNV-VDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ecccccC-CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 8875555 7899999999999999999999975
No 10
>PLN02244 tocopherol O-methyltransferase
Probab=99.51 E-value=1.2e-13 Score=146.27 Aligned_cols=122 Identities=16% Similarity=0.279 Sum_probs=93.1
Q ss_pred cHHHHHHHHHHhcccc-ccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC--CcEEEec
Q 008262 254 GADQYLDQIAKMVPDI-TWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAF 327 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i-~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~ 327 (572)
.+..+++++.+.+..- ....+..+|||||||+|.++..|++. +|+|+|+++.++..+.. .+.+.+. ...+...
T Consensus 97 aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~ 175 (340)
T PLN02244 97 AQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVA 175 (340)
T ss_pred HHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEc
Confidence 4445566666655410 00145678999999999999888764 89999999988865543 3444444 2345566
Q ss_pred cccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 328 ATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 328 d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|...+|+++++||+|+|..+++|+ .|...++++++|+|||||.|++++.
T Consensus 176 D~~~~~~~~~~FD~V~s~~~~~h~-~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 176 DALNQPFEDGQFDLVWSMESGEHM-PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred CcccCCCCCCCccEEEECCchhcc-CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 788899999999999999887787 7889999999999999999999863
No 11
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=2.4e-13 Score=137.60 Aligned_cols=184 Identities=19% Similarity=0.203 Sum_probs=112.2
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP 333 (572)
..+.+.+.+. ..+..+|||||||+|.++..+++. +|+|+|+++.|+..+ +++.....+...|.+.+.
T Consensus 19 ~~~~ll~~~~----~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a-----~~~~~~~~~~~~d~~~~~ 89 (258)
T PRK01683 19 PARDLLARVP----LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEA-----RSRLPDCQFVEADIASWQ 89 (258)
T ss_pred HHHHHHhhCC----CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HHhCCCCeEEECchhccC
Confidence 4445555554 245689999999999999888764 799999999877443 333223334455666554
Q ss_pred CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhcc-CcEE
Q 008262 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKE-GYIA 412 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~-g~i~ 412 (572)
++++||+|+|+.+ +||..+...+++++.++|||||.+++..+ ....... .. .+........|...-.. +...
T Consensus 90 -~~~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~~~~~~~-~~~~~~~-~~---~~~~~~~~~~w~~~~~~~~~~~ 162 (258)
T PRK01683 90 -PPQALDLIFANAS-LQWLPDHLELFPRLVSLLAPGGVLAVQMP-DNLDEPS-HV---LMREVAENGPWEQNLPDRGARR 162 (258)
T ss_pred -CCCCccEEEEccC-hhhCCCHHHHHHHHHHhcCCCcEEEEECC-CCCCCHH-HH---HHHHHHccCchHHHhccccccC
Confidence 4569999999876 56768889999999999999999999853 2221111 11 12222222223322111 1010
Q ss_pred EeeccchhHHHHHHhcCCCCCccCCCCCCccccCCCHHHHHhhcccCC
Q 008262 413 IWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENG 460 (572)
Q Consensus 413 iw~kpl~~~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L~~L~~~~ 460 (572)
...........++.++|+...+. .......|.+..+++..++.++
T Consensus 163 ~~~~~~~~~~~~l~~~g~~v~~~---~~~~~~~~~~~~~~~~~~~~~~ 207 (258)
T PRK01683 163 APLPPPHAYYDALAPAACRVDIW---HTTYYHPMPSAQAIVEWVKGTG 207 (258)
T ss_pred cCCCCHHHHHHHHHhCCCceeee---eeeeeeecCCchhhhhhhhhcc
Confidence 01111224566777888754222 3345567778888888777443
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.48 E-value=2.1e-13 Score=143.14 Aligned_cols=102 Identities=13% Similarity=0.105 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
+..+|||||||+|.++..|+.. +|+|+|+++.++..++.. +...+. ...+...+++.+++++++||+|+|..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 4568999999999999988765 799999999988666533 222221 23345556788888888999999999887
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+ .|+..+|.++.|+|||||.+++++.
T Consensus 210 Hv-~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 210 HV-ANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred hc-CCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 77 7889999999999999999999974
No 13
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.48 E-value=4.8e-13 Score=140.62 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=84.8
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHH-HcCCCcEEEeccccCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFAL-ERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~-~rg~~~~~~~~d~e~LPf 334 (572)
.+.+...+.. ..+++|||||||+|.++..+++. .|+|+|+|+.++.+....... .......+...+.+.+|+
T Consensus 111 ~~~l~~~l~~----l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 111 WDRVLPHLSP----LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322)
T ss_pred HHHHHHhhCC----CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence 3444555542 34589999999999999988775 599999999887543221111 112234455567888988
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++||+|+|..+++|. .++..+|++++++|||||.|++.+.
T Consensus 187 -~~~FD~V~s~~vl~H~-~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 187 -LKAFDTVFSMGVLYHR-RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred -cCCcCEEEECChhhcc-CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 7899999999887776 7889999999999999999999864
No 14
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.48 E-value=6.6e-14 Score=129.90 Aligned_cols=94 Identities=31% Similarity=0.582 Sum_probs=75.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.+..+|||||||+|.++..|.+. +++|+|+++.++.. . .......+....+.++++||+|+|+.+++|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------R--NVVFDNFDAQDPPFPDGSFDLIICNDVLEH 90 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------T--TSEEEEEECHTHHCHSSSEEEEEEESSGGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------h--hhhhhhhhhhhhhccccchhhHhhHHHHhh
Confidence 45689999999999999999877 89999999977643 1 111222223344567899999999988666
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. .++..+|+++.++|||||+++++++
T Consensus 91 ~-~d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 91 L-PDPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp S-SHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred c-ccHHHHHHHHHHhcCCCCEEEEEEc
Confidence 6 7899999999999999999999985
No 15
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.46 E-value=3.3e-13 Score=138.29 Aligned_cols=165 Identities=19% Similarity=0.328 Sum_probs=106.0
Q ss_pred CCCCCCCCCccccCCCCCCCCCCC-CCCCCCccccCCCCCccccccccCCCchhccCCeeeccCCCccccccHHHHHHHH
Q 008262 184 HCPLNGTGLNCLVPAPKGYKTPIP-WPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQI 262 (572)
Q Consensus 184 ~Cp~~~~~~~Clv~~P~~Y~~P~~-wP~srd~~W~~nvp~~~L~~~k~~qnWv~~~g~~~~Fpggg~~f~~g~~~~i~~L 262 (572)
.|+.. +|+..+.+||..-++ |.+.. ..+ ......+..+. .|...| .|....+..++.+
T Consensus 20 ~C~~~----h~fd~a~~Gy~~ll~~~~~~~--------~~~-----~d~~~~~~ar~---~fl~~g-~y~~l~~~i~~~l 78 (272)
T PRK11088 20 ICPQN----HQFDCAKEGYVNLLPVQHKRS--------KDP-----GDNKEMMQARR---AFLDAG-HYQPLRDAVANLL 78 (272)
T ss_pred EcCCC----CCCccccCceEEeccccccCC--------CCC-----CcCHHHHHHHH---HHHHCC-ChHHHHHHHHHHH
Confidence 78875 489999999988766 32221 000 01111122111 222221 2333333443444
Q ss_pred HHhccccccCCCCCEEEEECCCCchhHHHhccC-------CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC
Q 008262 263 AKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335 (572)
Q Consensus 263 ~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-------~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp 335 (572)
.+.+. ....+|||+|||+|.++..|++. .++|+|+|+.++. .|.++.....+...+...+|++
T Consensus 79 ~~~l~-----~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~-----~A~~~~~~~~~~~~d~~~lp~~ 148 (272)
T PRK11088 79 AERLD-----EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIK-----YAAKRYPQVTFCVASSHRLPFA 148 (272)
T ss_pred HHhcC-----CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHH-----HHHHhCCCCeEEEeecccCCCc
Confidence 44433 34578999999999998887643 4899999988774 4444444445556678899999
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
+++||+|++... ...+.|++|+|||||+|++.+ |...++.++++
T Consensus 149 ~~sfD~I~~~~~--------~~~~~e~~rvLkpgG~li~~~-p~~~~l~el~~ 192 (272)
T PRK11088 149 DQSLDAIIRIYA--------PCKAEELARVVKPGGIVITVT-PGPRHLFELKG 192 (272)
T ss_pred CCceeEEEEecC--------CCCHHHHHhhccCCCEEEEEe-CCCcchHHHHH
Confidence 999999997543 234689999999999999997 47777777654
No 16
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=3.2e-13 Score=136.55 Aligned_cols=120 Identities=14% Similarity=0.157 Sum_probs=83.8
Q ss_pred ccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc------CCeEEEeCCccchHHHHHHHHHHcCC--CcEE
Q 008262 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP------RNVITMSIAPKDVHENQIQFALERGA--PAMV 324 (572)
Q Consensus 253 ~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~------~~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~ 324 (572)
.+++...+.+...+... ..+..+|||||||+|.++..++. .+|+++|+|+.|+..++.+... .+. ...+
T Consensus 37 p~y~~~~~~~~~~~~~~--~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~v~~ 113 (247)
T PRK15451 37 PGYSNIISMIGMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPVDV 113 (247)
T ss_pred CChHHHHHHHHHHHHHh--CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEE
Confidence 34444444444333322 23567899999999998877654 2799999999999777655443 222 2344
Q ss_pred EeccccCCCCCCCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEEEC
Q 008262 325 AAFATRRLPYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 325 ~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
...+...++++ .+|+|+++.+++++..+ ...++++++|+|||||.|++++.
T Consensus 114 ~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 114 IEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 55566777764 49999998776665332 25899999999999999999863
No 17
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.46 E-value=1.9e-13 Score=135.88 Aligned_cols=107 Identities=19% Similarity=0.282 Sum_probs=89.4
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
.+.+|||||||-|.++..|+.. +|+|+|+++.++..++ ..|.+.++...+....+++|-...++||+|+|..+++|.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 5689999999999999999887 8999999999987665 456666665445455567776666899999999999999
Q ss_pred cCChHHHHHHHHHhccCCeEEEEEECCCCCCHH
Q 008262 352 TRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEE 384 (572)
Q Consensus 352 ~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~ 384 (572)
+|+..+++.+.+.+||||.+++++ +..++.
T Consensus 138 -~dp~~~~~~c~~lvkP~G~lf~ST--inrt~k 167 (243)
T COG2227 138 -PDPESFLRACAKLVKPGGILFLST--INRTLK 167 (243)
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEec--cccCHH
Confidence 899999999999999999999998 455544
No 18
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.45 E-value=1.1e-12 Score=131.55 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=76.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC------CeEEEeCCccchHHHHHHHHHHc-CCCcEEEeccccCCCCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiSp~dl~~a~~~~A~~r-g~~~~~~~~d~e~LPfp~~sFDlI~ss 345 (572)
.+..+|||||||+|.++..++++ +++|+|+|+.|+..++....... .....+...|...++++ .+|+|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 35678999999999998777642 69999999999876654333211 12334555677777765 58999998
Q ss_pred cccccccC-ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+++++.. +...++++++|+|||||.|+++..
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 77555532 236899999999999999999964
No 19
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.44 E-value=1.6e-12 Score=129.22 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=89.9
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL 332 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~L 332 (572)
.+.+.+.+. ..+..+|||+|||+|.++..+++. +|+|+|+++.++..++...+ ..+.. ..+...|.+.+
T Consensus 34 ~~~~l~~l~----~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~ 108 (231)
T TIGR02752 34 RKDTMKRMN----VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVK-DAGLHNVELVHGNAMEL 108 (231)
T ss_pred HHHHHHhcC----CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-hcCCCceEEEEechhcC
Confidence 344555554 245689999999999998887653 79999999988866554433 23333 33445567788
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHH
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEH 389 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~ 389 (572)
++++++||+|++..+ +|+.++...++.++.|+|||||++++.+. ...+...++..
T Consensus 109 ~~~~~~fD~V~~~~~-l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~-~~~~~~~~~~~ 163 (231)
T TIGR02752 109 PFDDNSFDYVTIGFG-LRNVPDYMQVLREMYRVVKPGGKVVCLET-SQPTIPGFKQL 163 (231)
T ss_pred CCCCCCccEEEEecc-cccCCCHHHHHHHHHHHcCcCeEEEEEEC-CCCCChHHHHH
Confidence 888899999998876 45558889999999999999999998864 33344444443
No 20
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.44 E-value=3.8e-13 Score=136.34 Aligned_cols=105 Identities=24% Similarity=0.392 Sum_probs=81.4
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
...+.+.+. ..+..+|||||||+|.++..|+++ +|+|+|+|+.|+.. ++++++. +...|.+.++
T Consensus 18 ~~~ll~~l~----~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~-----a~~~~~~--~~~~d~~~~~- 85 (255)
T PRK14103 18 FYDLLARVG----AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAA-----ARERGVD--ARTGDVRDWK- 85 (255)
T ss_pred HHHHHHhCC----CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH-----HHhcCCc--EEEcChhhCC-
Confidence 445555554 245689999999999999888764 79999999988743 4444433 4445666664
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++++||+|+|+.+ +||..++..++++++++|||||++++..
T Consensus 86 ~~~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 86 PKPDTDVVVSNAA-LQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CCCCceEEEEehh-hhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 5689999999877 5566888999999999999999999985
No 21
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.43 E-value=1.3e-12 Score=126.51 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=105.6
Q ss_pred CEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCC-CCCCCeeEEEecccccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLP-YPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~d~e~LP-fp~~sFDlI~ss~~l~h 350 (572)
..||++|||||..-.+.... +|+++|.++.|-.-+....+..+..... +..++.+++| ++++|+|.|+|..++..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 45899999999766665532 8999999999876665555555544444 5556789999 89999999999988666
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEEEeeccchhHHHHHHhcCC
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGT 430 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~iw~kpl~~~c~ll~~aGF 430 (572)
. .|+.+.|.|+.|+|||||.+++-.+ +.....-+...|++..+-. |..... +.. |.. +....+.++.|
T Consensus 158 v-e~~~k~L~e~~rlLRpgG~iifiEH-va~~y~~~n~i~q~v~ep~----~~~~~d--GC~-ltr---d~~e~Leda~f 225 (252)
T KOG4300|consen 158 V-EDPVKQLNEVRRLLRPGGRIIFIEH-VAGEYGFWNRILQQVAEPL----WHLESD--GCV-LTR---DTGELLEDAEF 225 (252)
T ss_pred c-CCHHHHHHHHHHhcCCCcEEEEEec-ccccchHHHHHHHHHhchh----hheecc--ceE-Eeh---hHHHHhhhccc
Confidence 6 8999999999999999999999987 6666555555555443332 333331 111 211 34556667777
Q ss_pred CCCccC
Q 008262 431 IPPLCD 436 (572)
Q Consensus 431 ~~p~cd 436 (572)
+...|.
T Consensus 226 ~~~~~k 231 (252)
T KOG4300|consen 226 SIDSCK 231 (252)
T ss_pred ccchhh
Confidence 766554
No 22
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.43 E-value=1.8e-12 Score=129.27 Aligned_cols=104 Identities=21% Similarity=0.213 Sum_probs=85.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----------CeEEEeCCccchHHHHHHHHHHcCCC----cEEEeccccCCCCCCCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----------NVITMSIAPKDVHENQIQFALERGAP----AMVAAFATRRLPYPSQA 338 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----------~V~gvDiSp~dl~~a~~~~A~~rg~~----~~~~~~d~e~LPfp~~s 338 (572)
....++||++||||..+..+++. +|+++|+++.|+.... +.+.++++. ..+...|+|.|||++++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 45689999999999888777653 6999999999997665 445445543 34555689999999999
Q ss_pred eeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECC
Q 008262 339 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (572)
Q Consensus 339 FDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P 378 (572)
||+.++.+.+-.| .++.+.|+|++|+|||||+|.+-.++
T Consensus 178 ~D~yTiafGIRN~-th~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 178 FDAYTIAFGIRNV-THIQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred ceeEEEecceecC-CCHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 9999998876666 89999999999999999999988753
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.42 E-value=9.7e-13 Score=137.65 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=81.9
Q ss_pred HHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHH-HHHHHcCCCcEEEeccccCCCCC
Q 008262 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQI-QFALERGAPAMVAAFATRRLPYP 335 (572)
Q Consensus 260 ~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~-~~A~~rg~~~~~~~~d~e~LPfp 335 (572)
+.+...+. ..++++|||||||+|.++..++.. .|+|+|.|+.|+.+... +..........+...+.+.++..
T Consensus 111 ~~~l~~l~----~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~ 186 (314)
T TIGR00452 111 DRVLPHLS----PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL 186 (314)
T ss_pred HHHHHhcC----CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence 34444444 235689999999999988877665 59999999988754321 11111112233444567788764
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+||+|+|..+++|+ .++..+|++++|+|||||.|++.+.
T Consensus 187 -~~FD~V~s~gvL~H~-~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 187 -YAFDTVFSMGVLYHR-KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred -CCcCEEEEcchhhcc-CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 589999999887777 8889999999999999999999874
No 24
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=1.7e-12 Score=131.73 Aligned_cols=102 Identities=20% Similarity=0.182 Sum_probs=80.0
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCC-CCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP-YPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LP-fp~~sFDlI~ss~~ 347 (572)
....+|||+|||+|.++..|++. +|+++|+++.|+..++. .+.+.+.. ..+...+.+.++ +.+++||+|+|..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 34579999999999999999887 89999999999876653 33344432 234444555553 66789999999987
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++| ..++..+|.++.|+|||||++++..
T Consensus 122 l~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 122 LEW-VADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHh-hCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 554 4888999999999999999999875
No 25
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.39 E-value=4.7e-12 Score=139.46 Aligned_cols=103 Identities=18% Similarity=0.323 Sum_probs=81.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
.+..+|||||||+|.++..|+.. +|+|+|+|+.++..+... +........+...|...+++++++||+|+|..+++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 45679999999999888877764 799999999887655432 22222234455567778888888999999998877
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+ .++..+|.+++|+|||||.+++++.
T Consensus 344 h~-~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 344 HI-QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred cc-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 77 7889999999999999999999964
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.38 E-value=1.8e-12 Score=113.76 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=74.8
Q ss_pred CCEEEEECCCCchhHHHhcc--C--CeEEEeCCccchHHHHHHHHHHcC-CCcEEEeccc-cCCCCCCCCeeEEEecc-c
Q 008262 275 IRVVMDAGCGVASFGAYLLP--R--NVITMSIAPKDVHENQIQFALERG-APAMVAAFAT-RRLPYPSQAFDLIHCSR-C 347 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~--~--~V~gvDiSp~dl~~a~~~~A~~rg-~~~~~~~~d~-e~LPfp~~sFDlI~ss~-~ 347 (572)
..+|||||||+|.++..+++ . +|+|+|+++.++..++........ ....+...|. ..... .+.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 57899999999999999888 3 899999999999777655533222 2334555555 33333 35699999987 4
Q ss_pred ccccc--CChHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWT--RDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~--~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..++. .+...+++++.+.|+|||+|++++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33332 334689999999999999999986
No 27
>PRK05785 hypothetical protein; Provisional
Probab=99.38 E-value=3.4e-12 Score=127.71 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||||||||.++..|++. +|+|+|+|+.|+..+. ++. . ....+.+.+|+++++||+|+|+.+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~-----~~~-~--~~~~d~~~lp~~d~sfD~v~~~~~l~- 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNL-----VAD-D--KVVGSFEALPFRDKSFDVVMSSFALH- 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHH-----hcc-c--eEEechhhCCCCCCCEEEEEecChhh-
Confidence 3578999999999999888765 7999999999985543 222 1 23457889999999999999998754
Q ss_pred ccCChHHHHHHHHHhccCCe
Q 008262 351 WTRDDGILLLEVNRMLRAGG 370 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG 370 (572)
+..|+..+++|++|+|||.+
T Consensus 122 ~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ccCCHHHHHHHHHHHhcCce
Confidence 45899999999999999953
No 28
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.37 E-value=3e-12 Score=125.33 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||+|||+|.++..|+++ +|+|+|+|+.++..++.. +...+.. ..+...|...++++ ++||+|+|+.++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERI-KAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-HHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 4578999999999999999887 899999999988766543 3344443 23334456666664 67999999977555
Q ss_pred ccC-ChHHHHHHHHHhccCCeEEEEE
Q 008262 351 WTR-DDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 351 w~~-d~~~~L~ei~RvLKPGG~lv~s 375 (572)
+.. +...++.++.++|||||++++.
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 432 3469999999999999996654
No 29
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.36 E-value=3.3e-12 Score=119.25 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=80.9
Q ss_pred CCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC--CCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LP--fp~~sFDlI~ss 345 (572)
+..+|||+|||+|.++..|++ .+++|+|+++.++..+.. .+.+.+.. ..+...|.++++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 467899999999999999883 279999999999866653 44445555 456666777777 66 899999998
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++ ++..+...+|+++.++|++||.++++..
T Consensus 81 ~~l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 81 GVL-HHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp STG-GGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Cch-hhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 775 5558888999999999999999999974
No 30
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.36 E-value=3.5e-12 Score=124.58 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
+..+|||+|||+|.++..|+++ +|+++|+++.++..+.. .+...++.......+...++++ ++||+|+|+.+++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFL 107 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEecccccC
Confidence 3578999999999999999876 89999999998866553 3444555433334455555554 689999998876665
Q ss_pred cC-ChHHHHHHHHHhccCCeEEEEE
Q 008262 352 TR-DDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 352 ~~-d~~~~L~ei~RvLKPGG~lv~s 375 (572)
.. +...++++++|+|||||++++.
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 33 3468999999999999996665
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.36 E-value=9.7e-12 Score=127.08 Aligned_cols=103 Identities=23% Similarity=0.281 Sum_probs=79.4
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.+..+|||||||+|.++..++.. +|+++|+++.++..++.. ....+.. ..+...+.+.+++++++||+|+++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~-~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN-ARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH-HHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 35689999999999866544432 699999999988666543 3333443 2344457888899889999999886
Q ss_pred ccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+ +|+..+...++.++.|+|||||+|++++.
T Consensus 155 v-~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 155 V-INLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred c-ccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5 55658888999999999999999999864
No 32
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.33 E-value=4.6e-13 Score=115.70 Aligned_cols=93 Identities=25% Similarity=0.403 Sum_probs=55.9
Q ss_pred EEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-CC-CCCCeeEEEecccccccc
Q 008262 279 MDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-PY-PSQAFDLIHCSRCRINWT 352 (572)
Q Consensus 279 LDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-Pf-p~~sFDlI~ss~~l~hw~ 352 (572)
||||||+|.++..+++. +++++|+|+.|+..++.+................... .. ..++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999998888765 8999999999995544444432222222222222222 11 22699999999886666
Q ss_pred CChHHHHHHHHHhccCCeEE
Q 008262 353 RDDGILLLEVNRMLRAGGYF 372 (572)
Q Consensus 353 ~d~~~~L~ei~RvLKPGG~l 372 (572)
++...++++++++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 89899999999999999986
No 33
>PRK08317 hypothetical protein; Provisional
Probab=99.32 E-value=1.4e-11 Score=121.48 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=86.6
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e 330 (572)
..+.+.+.+.+. ..+..+|||+|||+|.++..+++. +++++|+++.++..+... .........+...+.+
T Consensus 5 ~~~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~ 79 (241)
T PRK08317 5 RRYRARTFELLA----VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHHHHHcC----CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccc
Confidence 344555666555 245689999999999998887643 799999999877544432 1111223344455677
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+++++++||+|++..++.|+ .++..++.++.++|||||++++...
T Consensus 80 ~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 80 GLPFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred cCCCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 788888999999999886666 7889999999999999999999863
No 34
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.29 E-value=1.2e-11 Score=127.08 Aligned_cols=126 Identities=21% Similarity=0.310 Sum_probs=87.0
Q ss_pred eccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcC
Q 008262 243 KFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG 319 (572)
Q Consensus 243 ~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg 319 (572)
.|+.+...+...+...++.+.+.+. ..++.+|||||||.|.++..++++ +|+|+++|......++ +.+.++|
T Consensus 35 ~~~~~~~~Le~AQ~~k~~~~~~~~~----l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~g 109 (273)
T PF02353_consen 35 YFDEGDDTLEEAQERKLDLLCEKLG----LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAG 109 (273)
T ss_dssp --SSTT--HHHHHHHHHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCST
T ss_pred ecCCchhhHHHHHHHHHHHHHHHhC----CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcC
Confidence 3455555566677778888888776 367899999999999999999987 8999999876553332 4445566
Q ss_pred CCc--EEEeccccCCCCCCCCeeEEEeccccccccC-ChHHHHHHHHHhccCCeEEEEEE
Q 008262 320 APA--MVAAFATRRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 320 ~~~--~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.. .+...|..+++ .+||.|+|..++.|... +...+|+++.++|||||.+++.+
T Consensus 110 l~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 110 LEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 543 34444555554 39999999999999853 45799999999999999999875
No 35
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=2.3e-11 Score=124.65 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=99.6
Q ss_pred eccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcC
Q 008262 243 KFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG 319 (572)
Q Consensus 243 ~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg 319 (572)
.|+.+...+...+...++.+++.+. ..++.+|||||||.|.++.+++++ +|+|+++|+.+...++ +.++++|
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~----L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r~~~~g 119 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLG----LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KRIAARG 119 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcC----CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HHHHHcC
Confidence 4666655666777778888888877 468899999999999999999887 8999999998775554 4455566
Q ss_pred CC--cEEEeccccCCCCCCCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEEECCCCC
Q 008262 320 AP--AMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQPVYK 381 (572)
Q Consensus 320 ~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st~P~~~ 381 (572)
.. ..+.. .+.+...+.||-|+|..++.|.... .+.+|..++++|+|||.+++-+.....
T Consensus 120 l~~~v~v~l---~d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 120 LEDNVEVRL---QDYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred CCcccEEEe---ccccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 65 22322 3333334559999999999998653 479999999999999999998753333
No 36
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.25 E-value=8.5e-11 Score=114.50 Aligned_cols=96 Identities=20% Similarity=0.144 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCchhHHHhcc----CCeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
++.+|||||||+|.++..++. .+|+++|.++.++..++. .++..+.. ..+...+.+.++. .++||+|+|...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~-~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLRE-VAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc-
Confidence 368999999999998887764 289999999998876654 34444554 3344456666766 679999998642
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+...++.+++++|||||.+++..
T Consensus 122 ----~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 122 ----ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ----cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 456889999999999999999986
No 37
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.25 E-value=3.9e-11 Score=126.76 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=79.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.+..+|||||||+|.++..+++. +|+++|+++.|+..+..... ..+ ..+...|.+.+++++++||+|+++.++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~--i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKE--CKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccC--CeEEeccHHhCCCCCCceeEEEEcChh
Confidence 34579999999999988777543 79999999988865544322 112 234556788899999999999998876
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++ .+...+|++++|+|||||.+++..+
T Consensus 189 ~~~-~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 189 EYW-PDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hhC-CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 666 7888999999999999999988753
No 38
>PRK06922 hypothetical protein; Provisional
Probab=99.25 E-value=8e-11 Score=132.04 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--CCCCCeeEEEeccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSRC 347 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--fp~~sFDlI~ss~~ 347 (572)
++.+|||+|||+|.++..++.. +|+|+|+|+.|+..++.+. ...+....+...|...++ +++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 4579999999999988777643 8999999999887665432 223333334445667777 78899999999887
Q ss_pred ccccc------------CChHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWT------------RDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~------------~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+++|. .+...+|++++|+|||||.+++..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 66653 234689999999999999999986
No 39
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.23 E-value=5.9e-12 Score=109.52 Aligned_cols=92 Identities=29% Similarity=0.534 Sum_probs=69.0
Q ss_pred EEEECCCCchhHHHhcc-------CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccc-cc
Q 008262 278 VMDAGCGVASFGAYLLP-------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC-RI 349 (572)
Q Consensus 278 VLDIGCGtG~~a~~L~~-------~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~-l~ 349 (572)
|||+|||+|..+..+.+ ..++++|+++.|+..+..... +.+....+...|...+++.+++||+|+|+.+ +.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~-~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS-EDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH-HTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch-hcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999988877763 379999999999866654333 3556666777788889988899999999655 55
Q ss_pred cccCC-hHHHHHHHHHhccCCe
Q 008262 350 NWTRD-DGILLLEVNRMLRAGG 370 (572)
Q Consensus 350 hw~~d-~~~~L~ei~RvLKPGG 370 (572)
|+.++ ...+|+++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 54322 2689999999999998
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.23 E-value=4.7e-11 Score=123.48 Aligned_cols=99 Identities=16% Similarity=0.255 Sum_probs=75.7
Q ss_pred CCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~ 352 (572)
..+|||+|||+|.++..|++. +|+|+|+|+.++..++ +.+...++...+...|....++ +++||+|+|+.++++..
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCC
Confidence 358999999999999998876 8999999998886554 4455556644444445555555 68999999987766553
Q ss_pred C-ChHHHHHHHHHhccCCeEEEEE
Q 008262 353 R-DDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 353 ~-d~~~~L~ei~RvLKPGG~lv~s 375 (572)
. +...+++++.|+|||||++++.
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 3468999999999999997765
No 41
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.22 E-value=9.6e-11 Score=120.48 Aligned_cols=174 Identities=20% Similarity=0.247 Sum_probs=112.2
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHc-CC--CcEEEeccccCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER-GA--PAMVAAFATRRL 332 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~r-g~--~~~~~~~d~e~L 332 (572)
-+++...+++ -.+++|||||||.|+++..|+.+ .|+|+|.++.-. .+-+++++. +. .........+.|
T Consensus 104 W~rl~p~l~~----L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~--~QF~~i~~~lg~~~~~~~lplgvE~L 177 (315)
T PF08003_consen 104 WDRLLPHLPD----LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY--LQFEAIKHFLGQDPPVFELPLGVEDL 177 (315)
T ss_pred HHHHHhhhCC----cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH--HHHHHHHHHhCCCccEEEcCcchhhc
Confidence 3455556653 35789999999999999888876 699999887543 332333322 22 222333467899
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhch-hhhhccCcE
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCW-ELVKKEGYI 411 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w-~~v~~~g~i 411 (572)
|. .++||+|+|..++.|- .++-..|.++...|+|||.+++.|.-+.+.... .++- ...++..
T Consensus 178 p~-~~~FDtVF~MGVLYHr-r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~-------------~L~P~~rYa~m~-- 240 (315)
T PF08003_consen 178 PN-LGAFDTVFSMGVLYHR-RSPLDHLKQLKDSLRPGGELVLETLVIDGDENT-------------VLVPEDRYAKMR-- 240 (315)
T ss_pred cc-cCCcCEEEEeeehhcc-CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCce-------------EEccCCcccCCC--
Confidence 87 7899999999998898 888999999999999999999998633332110 0000 0111111
Q ss_pred EEeeccch-hHHHHHHhcCCCCCccCCC------CCCcc--ccCCCHHHHHhh
Q 008262 412 AIWKKPTN-NSCYLNREAGTIPPLCDPD------DNPDN--VWYVDLKACITR 455 (572)
Q Consensus 412 ~iw~kpl~-~~c~ll~~aGF~~p~cd~~------~~~~~--~wY~~l~~~L~~ 455 (572)
-+|--|.. ....+++++||....|-.. ++..+ ..+.|+.+.|.+
T Consensus 241 nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR~T~Wm~~~SL~dFLDp 293 (315)
T PF08003_consen 241 NVWFIPSVAALKNWLERAGFKDVRCVDVSPTTIEEQRKTDWMDFQSLEDFLDP 293 (315)
T ss_pred ceEEeCCHHHHHHHHHHcCCceEEEecCccCCHHHhccCCCcCcccHHHhcCC
Confidence 13444433 4677889999987655211 11122 345666666654
No 42
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.22 E-value=1.3e-10 Score=121.90 Aligned_cols=181 Identities=15% Similarity=0.155 Sum_probs=103.9
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHc-----CCCcEEEe
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER-----GAPAMVAA 326 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~r-----g~~~~~~~ 326 (572)
+....++.+.+.+.... ..+..+|||||||+|.++..|++. +|+|+|+|+.|+..++.+..... .....+..
T Consensus 125 ~~~~~v~~~l~~l~~~~-~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~ 203 (315)
T PLN02585 125 GHAQTVEKVLLWLAEDG-SLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEA 203 (315)
T ss_pred ChHHHHHHHHHHHHhcC-CCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEE
Confidence 44455566666654210 124579999999999999999876 79999999999976664433210 11223333
Q ss_pred ccccCCCCCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhh
Q 008262 327 FATRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELV 405 (572)
Q Consensus 327 ~d~e~LPfp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v 405 (572)
.|.+.+ +++||+|+|..+++|+..+. ..++..+.+ +.+||. +++..|. +.. ...+..+... |.
T Consensus 204 ~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~--~~~--~~~l~~~g~~-----~~-- 267 (315)
T PLN02585 204 NDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPK--TLY--YDILKRIGEL-----FP-- 267 (315)
T ss_pred cchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCc--chH--HHHHHHHHhh-----cC--
Confidence 344333 58899999999988885443 345555554 556555 4554332 211 1111111110 11
Q ss_pred hccCcEEEeeccchhHHHHHHhcCCCCCccCCCCCCccccCCCHHHHH
Q 008262 406 KKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACI 453 (572)
Q Consensus 406 ~~~g~i~iw~kpl~~~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L 453 (572)
........|..+..+...+++++||.+..+. ......+|.-+.+|.
T Consensus 268 g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~--~~~~~~y~~~l~~~~ 313 (315)
T PLN02585 268 GPSKATRAYLHAEADVERALKKAGWKVARRE--MTATQFYFSRLLEAV 313 (315)
T ss_pred CCCcCceeeeCCHHHHHHHHHHCCCEEEEEE--EeecceeHHhhhhhc
Confidence 1111122344455677889999999876544 444555665555553
No 43
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.20 E-value=8.2e-11 Score=116.03 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
+..+|||||||+|.++..|++. +++|+|+|+.++..+ +++.....+...++.. |+++++||+|+|+.+++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A-----~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKA-----KAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHH-----HhhCCCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 4578999999999988887653 799999999887444 3322222334445555 88899999999999988
Q ss_pred cccCC-hHHHHHHHHHhccCCeEEEEEE
Q 008262 350 NWTRD-DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 350 hw~~d-~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.++ ...+++++.|++ ++++++..
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 88533 368999999998 56888875
No 44
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.19 E-value=2.1e-10 Score=101.82 Aligned_cols=98 Identities=17% Similarity=0.099 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC-CCCCCCCeeEEEeccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR-LPYPSQAFDLIHCSRC 347 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~-LPfp~~sFDlI~ss~~ 347 (572)
...+|||+|||+|.++..++++ +|+++|+++.++..+..... ..+.. ..+...+... ++...++||.|++...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNAR-RFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHH-HhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 4579999999999999888764 79999999988866654333 33333 2333333333 3333468999998754
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.. ....+++++.+.|||||+|+++.
T Consensus 98 ~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 GG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 22 23689999999999999999874
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.19 E-value=6.7e-11 Score=116.26 Aligned_cols=102 Identities=19% Similarity=0.272 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccc-cCCC--CCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFAT-RRLP--YPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~-e~LP--fp~~sFDlI~ss 345 (572)
+..+|||||||+|.++..+++. +|+++|+++.++..+..+.. ..+.. ..+...++ +.++ +++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIE-EEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHH-HcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 4678999999999998887654 79999999998876654333 33433 34455566 6666 778899999987
Q ss_pred cccccccCC--------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~d--------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+ .+|... ...+++++.++|||||.|++++.
T Consensus 119 ~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 119 FP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 54 444321 36799999999999999999863
No 46
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.18 E-value=6.1e-10 Score=109.10 Aligned_cols=113 Identities=17% Similarity=0.214 Sum_probs=81.9
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
+.+.+.+.+. ..+..+|||+|||+|.++..++.. +++++|+++.++..+..... ......+...+...+
T Consensus 27 ~~~~~~~~~~----~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 27 WRRRAVKLIG----VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEAL 100 (223)
T ss_pred HHHHHHHHhc----cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcC
Confidence 3444444443 235689999999999998887654 69999999876654433222 111233445567777
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++++||+|+++..+++. .+...+++++.++|+|||.+++.+.
T Consensus 101 ~~~~~~~D~i~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 101 PFEDNSFDAVTIAFGLRNV-TDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCCCcEEEEEEeeeeCCc-ccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8877899999998775444 7889999999999999999998764
No 47
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.18 E-value=7.2e-11 Score=116.87 Aligned_cols=99 Identities=22% Similarity=0.328 Sum_probs=75.4
Q ss_pred CEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
++|||||||+|.++..+++. +|+|+|+++.++..+... ....+.. ..+...|....+++ ++||+|++..+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~-~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRER-IRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 36999999999988888653 799999999877555433 2333432 23444455555664 5899999988877
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+ .+...+|+++.++|||||++++++.
T Consensus 79 ~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 79 HI-KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hC-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 76 7789999999999999999999864
No 48
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.18 E-value=1.3e-10 Score=115.12 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=67.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 339 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--------fp~~sF 339 (572)
.+..+|||||||+|.++..++++ .|+++|+++ |. . .....+...|+...+ +.+++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~-----~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----P-----IVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----C-----CCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 45679999999999999888664 699999987 21 0 012334445655542 567899
Q ss_pred eEEEeccccccccCCh-----------HHHHHHHHHhccCCeEEEEEEC
Q 008262 340 DLIHCSRCRINWTRDD-----------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 340 DlI~ss~~l~hw~~d~-----------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+|+|+.+ .++..++ ..+|.++.++|||||.|++..+
T Consensus 119 D~V~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 119 QVVMSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CEEecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99998754 5554332 3589999999999999999864
No 49
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.18 E-value=1.4e-10 Score=120.05 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=70.4
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||+|||+|.++..++.. +|+++|+++.++..++.+.. ..+....+........+..+++||+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~-~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAE-LNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-HcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4589999999999988777654 79999999998876654433 33443222111111234456799999987542
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.....++.++.++|||||+|+++..
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2236789999999999999999974
No 50
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.18 E-value=1.6e-10 Score=112.74 Aligned_cols=101 Identities=19% Similarity=0.338 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
+..++||+|||.|..+.+|+++ .|+++|.|+..+... .+.|.+.++.......|.+...++ +.||+|+|..++.+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l-~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKL-QRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFL 107 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHH-HHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHH-HHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccC
Confidence 4579999999999999999998 899999999877654 467777888766666677777765 689999988776666
Q ss_pred cCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 352 TRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 352 ~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
..+. +.++..+...++|||++++.+
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 5544 589999999999999999864
No 51
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.16 E-value=3.4e-11 Score=120.81 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=74.7
Q ss_pred CCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-----E--EEeccccCCCCCCCCeeEEEec
Q 008262 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-----M--VAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-----~--~~~~d~e~LPfp~~sFDlI~ss 345 (572)
+++|||+|||+|.++..|+.. +|+|+|++..|+..+... +....... . +...+.+.+ .+.||.|+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 478999999999999999876 899999999988666544 22111100 1 111122333 3459999999
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+++|. .|+..++..+.+.|||||.+++++
T Consensus 166 evleHV-~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 166 EVLEHV-KDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred HHHHHH-hCHHHHHHHHHHHhCCCCceEeee
Confidence 999999 899999999999999999999998
No 52
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.16 E-value=6.5e-10 Score=110.05 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHc-CCCcEEEeccccCCCCCCCCeeEEEeccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~r-g~~~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
+..+|||+|||+|.++..++. .+++++|+++.++..++....... .....+...+...++++.++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 457899999999998877754 379999999988765554333211 11233444566777777789999999877
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++ .+...+|.++.++|+|||.+++.+.
T Consensus 131 l~~~-~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 LRNV-PDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccC-CCHHHHHHHHHHhccCCcEEEEEEe
Confidence 5555 7889999999999999999988764
No 53
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.14 E-value=6e-10 Score=107.92 Aligned_cols=105 Identities=21% Similarity=0.192 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
++.+|||+|||+|.++..++.. +|+++|.++.++..+.. .+++.+.. ..+...+.+.++ .+++||+|+|..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~-~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLRE-VKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--
Confidence 3679999999999888776532 79999999988765443 33444543 344555666664 357999999864
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHH
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 387 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~ 387 (572)
+ .+...+++.+.++|||||.+++.. ......++.
T Consensus 118 --~-~~~~~~~~~~~~~LkpgG~lvi~~--~~~~~~~~~ 151 (181)
T TIGR00138 118 --L-ASLNVLLELTLNLLKVGGYFLAYK--GKKYLDEIE 151 (181)
T ss_pred --h-hCHHHHHHHHHHhcCCCCEEEEEc--CCCcHHHHH
Confidence 2 455778999999999999999884 344444433
No 54
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.14 E-value=2e-10 Score=123.63 Aligned_cols=115 Identities=21% Similarity=0.264 Sum_probs=82.5
Q ss_pred ccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc
Q 008262 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (572)
Q Consensus 253 ~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~ 329 (572)
..+...++.+.+.+. ..++.+|||||||+|.++..+++. +|+|+|+|+.++..+.... .+....+...|.
T Consensus 150 ~Aq~~k~~~l~~~l~----l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~---~~l~v~~~~~D~ 222 (383)
T PRK11705 150 EAQEAKLDLICRKLQ----LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC---AGLPVEIRLQDY 222 (383)
T ss_pred HHHHHHHHHHHHHhC----CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---ccCeEEEEECch
Confidence 344455666666654 246689999999999999888764 7999999998775544322 123333333344
Q ss_pred cCCCCCCCCeeEEEeccccccccC-ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 330 RRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 330 e~LPfp~~sFDlI~ss~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+ +++||+|+|..+++|... +...+++++.|+|||||++++.+.
T Consensus 223 ~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 223 RDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred hhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 443 478999999888777632 346899999999999999999864
No 55
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.13 E-value=6e-11 Score=115.94 Aligned_cols=108 Identities=25% Similarity=0.329 Sum_probs=88.6
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
...|...++ ....++|.|+|||+|..+..|.++ .|+|+|-|+.|+ ..|+.+.+...+...|+..+.
T Consensus 19 a~dLla~Vp----~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Ml-----a~Aa~rlp~~~f~~aDl~~w~- 88 (257)
T COG4106 19 ARDLLARVP----LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAML-----AKAAQRLPDATFEEADLRTWK- 88 (257)
T ss_pred HHHHHhhCC----ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHH-----HHHHHhCCCCceecccHhhcC-
Confidence 445666666 346789999999999999999987 899999999888 445566666667666776665
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++..+|+++++. .+||.+|...+|..+...|.|||.|.+..+
T Consensus 89 p~~~~dllfaNA-vlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 89 PEQPTDLLFANA-VLQWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred CCCccchhhhhh-hhhhccccHHHHHHHHHhhCCCceEEEECC
Confidence 457899999875 599999999999999999999999999953
No 56
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.13 E-value=5.9e-10 Score=110.38 Aligned_cols=116 Identities=20% Similarity=0.248 Sum_probs=82.4
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFAT 329 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~ 329 (572)
+.....+.+.+.+.. ...+..+|||+|||+|.++..++.. .|+|+|+++.++..++.+... .+. ...+...+.
T Consensus 37 ~~~~~~~~~~~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~ 113 (219)
T TIGR02021 37 GRAAMRRKLLDWLPK--DPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQG-RDVAGNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHHHHHHhc--CCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEECCh
Confidence 344555566666652 0235689999999999999999866 799999999988666544332 232 234444555
Q ss_pred cCCCCCCCCeeEEEeccccccccC-ChHHHHHHHHHhccCCeEEEEE
Q 008262 330 RRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 330 e~LPfp~~sFDlI~ss~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~s 375 (572)
+.++ ++||+|++..+++|+.. +...++.++.+++++++++.++
T Consensus 114 ~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 114 LSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5554 78999999888777743 3468899999999988777654
No 57
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.13 E-value=1.4e-10 Score=127.72 Aligned_cols=112 Identities=17% Similarity=0.256 Sum_probs=81.1
Q ss_pred HHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc--CCCCC
Q 008262 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR--RLPYP 335 (572)
Q Consensus 260 ~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e--~LPfp 335 (572)
..+.+.+. ..+..+|||||||+|.++..|++. +|+|+|+++.++..+.. .........+...|.. .++++
T Consensus 27 ~~il~~l~----~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 27 PEILSLLP----PYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hHHHhhcC----ccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCC
Confidence 44455554 234568999999999999999876 89999999998854422 1111112233344443 57788
Q ss_pred CCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEEEC
Q 008262 336 SQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++||+|+|+.+++|+..+ ...++.+++|+|||||++++...
T Consensus 101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 8999999999887776433 36899999999999999999753
No 58
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.12 E-value=6.2e-10 Score=110.29 Aligned_cols=114 Identities=22% Similarity=0.316 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC--CcEEEecccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATR 330 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e 330 (572)
.....+.+.+.+.... ..+..+|||||||+|.++..|++. .|+++|+++.++..++..... .+. ...+...+
T Consensus 45 ~~~~~~~~~~~l~~~~-~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d-- 120 (230)
T PRK07580 45 HQRMRDTVLSWLPADG-DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD-- 120 (230)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC--
Confidence 3444555555554310 134578999999999999988765 799999999998776654433 222 22233333
Q ss_pred CCCCCCCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv 373 (572)
++..+++||+|+|..+++|+..+ ...++.++.+.+++++.+.
T Consensus 121 -~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 121 -LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred -chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 45556899999999887787432 2578888888776555443
No 59
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.11 E-value=2.1e-10 Score=117.47 Aligned_cols=103 Identities=19% Similarity=0.278 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCch----hHHHhcc---------CCeEEEeCCccchHHHHHHHH---HHcCC-----------------
Q 008262 274 HIRVVMDAGCGVAS----FGAYLLP---------RNVITMSIAPKDVHENQIQFA---LERGA----------------- 320 (572)
Q Consensus 274 ~~~~VLDIGCGtG~----~a~~L~~---------~~V~gvDiSp~dl~~a~~~~A---~~rg~----------------- 320 (572)
+..+|||+|||||. ++..|++ .+|+|+|+|+.|+..+....- .-+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45789999999994 4444432 269999999999866653210 00011
Q ss_pred -------CcEEEeccccCCCCCCCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEEE
Q 008262 321 -------PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 321 -------~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st 376 (572)
...+...|....+++.++||+|+|.++++|+... ...++.+++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1234445666777778899999999888877422 2489999999999999999973
No 60
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.11 E-value=3.3e-10 Score=110.59 Aligned_cols=102 Identities=17% Similarity=0.272 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC---CCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP---YPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP---fp~~sFDlI~ss 345 (572)
...+|||||||+|.++..++.+ +|+|+|+++.++..+.... ...++.+ .+...|+..++ +++++||.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~-~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKA-NKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHH-HHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4468999999999999888765 7999999998886665433 3344433 34444555443 456799999987
Q ss_pred cccccccCCh--------HHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTRDD--------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~d~--------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. .+|.... ..++.++.|+|||||.|++.+.
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 54 5554331 4789999999999999999873
No 61
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.10 E-value=3.8e-10 Score=112.09 Aligned_cols=104 Identities=13% Similarity=0.021 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHH------------HcCCCcEEEeccccCCCCC-CCC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL------------ERGAPAMVAAFATRRLPYP-SQA 338 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~------------~rg~~~~~~~~d~e~LPfp-~~s 338 (572)
+..+|||+|||.|..+..|+++ +|+|+|+|+..+..+..+... .++....+...|...++.. .+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 4579999999999999999988 899999999877543211100 0112233445566555532 357
Q ss_pred eeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 339 FDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 339 FDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
||+|+...+++|+..+. ..++..+.++|||||++++.++
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 99999888888885554 5799999999999998766643
No 62
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.09 E-value=4.2e-10 Score=110.31 Aligned_cols=118 Identities=16% Similarity=0.283 Sum_probs=86.5
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~ 331 (572)
-+.++.++-++++. ++.....-|||||||+|..+..|.+. ..+|+|+|+.|++.+..+.. + ...+.+.+ -+-
T Consensus 32 IQ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~-e--gdlil~DM-G~G 105 (270)
T KOG1541|consen 32 IQAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVEREL-E--GDLILCDM-GEG 105 (270)
T ss_pred ehHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhh-h--cCeeeeec-CCC
Confidence 34556666666665 22345788999999999999998876 78999999999966653111 1 22334444 389
Q ss_pred CCCCCCCeeEEEeccccccccCCh-------H----HHHHHHHHhccCCeEEEEEECC
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRDD-------G----ILLLEVNRMLRAGGYFAWAAQP 378 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d~-------~----~~L~ei~RvLKPGG~lv~st~P 378 (572)
+||.+++||.+++.. +++|.-+. . .++..++.+|++|+..++...|
T Consensus 106 lpfrpGtFDg~ISIS-AvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 106 LPFRPGTFDGVISIS-AVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred CCCCCCccceEEEee-eeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 999999999999874 47875332 1 5677899999999999999643
No 63
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.08 E-value=4.9e-10 Score=120.03 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=75.6
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC----cEEEecccc
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP----AMVAAFATR 330 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~----~~~~~~d~e 330 (572)
.+.+.+.++. ....+|||+|||+|.++..++++ +|+++|+++.++..++.+... .+.. ..+...|..
T Consensus 217 trllL~~lp~----~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~-n~~~~~~~v~~~~~D~l 291 (378)
T PRK15001 217 ARFFMQHLPE----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNAL 291 (378)
T ss_pred HHHHHHhCCc----ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCcccCceEEEEEcccc
Confidence 3445556652 22368999999999999888765 799999999888666544432 2221 122222321
Q ss_pred CCCCCCCCeeEEEecccccccc--CC--hHHHHHHHHHhccCCeEEEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINWT--RD--DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~--~d--~~~~L~ei~RvLKPGG~lv~st 376 (572)
. .++.++||+|+|+..+++-. .+ ...++.++.++|||||.|++..
T Consensus 292 ~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 292 S-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred c-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1 13456899999987754321 11 2478999999999999999985
No 64
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.08 E-value=3e-10 Score=110.36 Aligned_cols=112 Identities=21% Similarity=0.381 Sum_probs=73.3
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY 334 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPf 334 (572)
+...+...|+ ....+++||+|||.|.++..|+.+ .++++|+|+..+..+....+ +.+ ..+...+... ..
T Consensus 31 ~~~~l~aaLp----~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~---~~~~V~~~~~dvp~-~~ 102 (201)
T PF05401_consen 31 YRATLLAALP----RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA---GLPHVEWIQADVPE-FW 102 (201)
T ss_dssp HHHHHHHHHT----TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT---T-SSEEEEES-TTT---
T ss_pred HHHHHHHhcC----ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC---CCCCeEEEECcCCC-CC
Confidence 3334444455 356688999999999999999998 89999999876644332222 222 2333433322 25
Q ss_pred CCCCeeEEEeccccccccC--ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWTR--DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~--d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|.+.||+|+++.++..+.+ +...++..+...|+|||.|++.+.
T Consensus 103 P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 103 PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 7899999999998666643 235789999999999999999863
No 65
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.07 E-value=6.6e-10 Score=117.85 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=78.6
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
.+.+.+.++. ....+|||+|||+|.++..++++ +|+++|+++.++..++.... ..++...+...|.. ..
T Consensus 185 t~lLl~~l~~----~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~D~~--~~ 257 (342)
T PRK09489 185 SQLLLSTLTP----HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFASNVF--SD 257 (342)
T ss_pred HHHHHHhccc----cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEcccc--cc
Confidence 3444555542 22357999999999999888764 79999999998877664443 34454444433332 22
Q ss_pred CCCCeeEEEeccccccccC----ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWTR----DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~----d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++.||+|+|+..+++... ....++.++.+.|||||.|++...
T Consensus 258 ~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 3578999999977544221 236899999999999999999864
No 66
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.07 E-value=3.4e-10 Score=109.68 Aligned_cols=101 Identities=25% Similarity=0.365 Sum_probs=77.6
Q ss_pred HHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-CC
Q 008262 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-YP 335 (572)
Q Consensus 260 ~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP-fp 335 (572)
+.|+++++ ++.+|||+|||.|.+..+|.+. ...|+|+++.. +..+.++|++......+ +.|. |+
T Consensus 5 ~~I~~~I~------pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~-----v~~cv~rGv~Viq~Dld-~gL~~f~ 72 (193)
T PF07021_consen 5 QIIAEWIE------PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDN-----VAACVARGVSVIQGDLD-EGLADFP 72 (193)
T ss_pred HHHHHHcC------CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHH-----HHHHHHcCCCEEECCHH-HhHhhCC
Confidence 44555555 5689999999999999999875 67899887754 46677889886554443 4565 99
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+++||.|+++.++.+. .++..+|.|+.|+ |...+++.
T Consensus 73 d~sFD~VIlsqtLQ~~-~~P~~vL~EmlRV---gr~~IVsF 109 (193)
T PF07021_consen 73 DQSFDYVILSQTLQAV-RRPDEVLEEMLRV---GRRAIVSF 109 (193)
T ss_pred CCCccEEehHhHHHhH-hHHHHHHHHHHHh---cCeEEEEe
Confidence 9999999999886555 8889999999777 55676663
No 67
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.07 E-value=1.7e-09 Score=103.90 Aligned_cols=101 Identities=19% Similarity=0.166 Sum_probs=73.3
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
+..+|||+|||+|.++..++.. +|+++|+++.++..+..... ..+....+...|.... ..++||+|+++...++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~--~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKG--VRGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEcccccc--cCCcccEEEECCCCCCC
Confidence 3468999999999999988876 69999999998866654443 3344333444444333 24699999998765544
Q ss_pred cCC--------------------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 352 TRD--------------------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 352 ~~d--------------------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+ ...++.++.|+|||||.+++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 221 24679999999999999999863
No 68
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.07 E-value=1e-09 Score=104.80 Aligned_cols=133 Identities=18% Similarity=0.233 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc--EEEecc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA 328 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d 328 (572)
...+++.+.+.+..........+|||+|||+|.+...|++. .++|+|.|+..+.-|+ ..|..++..+ .+.+.|
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~D 126 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLD 126 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEee
Confidence 34556666555542212334458999999999999999986 5999999998775443 5677677764 455566
Q ss_pred ccCCCCCCCCeeEEEecccc--ccccCCh-----HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH
Q 008262 329 TRRLPYPSQAFDLIHCSRCR--INWTRDD-----GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l--~hw~~d~-----~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w 390 (572)
+..-.+..+.||+|+--..+ +.++++. ..++..+.++|+|||+|+|+. +++|..||.+.+
T Consensus 127 I~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS--CN~T~dELv~~f 193 (227)
T KOG1271|consen 127 ITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS--CNFTKDELVEEF 193 (227)
T ss_pred ccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe--cCccHHHHHHHH
Confidence 65556778899999865533 2222222 367889999999999999997 899999887754
No 69
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=5.2e-10 Score=115.57 Aligned_cols=100 Identities=23% Similarity=0.310 Sum_probs=71.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCC-CCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS-QAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~-~sFDlI~ss~~l 348 (572)
.++++|||+|||+|.++...+.. .|+|+|+.|..+..++ +.++.+++...........+..+. +.||+|+++-.+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 46799999999999988776654 7999999998775555 455555555311111112222333 599999998542
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. -...+..++.+.|||||++++|..
T Consensus 240 ~----vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 240 E----VLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred H----HHHHHHHHHHHHcCCCceEEEEee
Confidence 2 226899999999999999999973
No 70
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.06 E-value=5.5e-10 Score=106.78 Aligned_cols=111 Identities=22% Similarity=0.253 Sum_probs=74.2
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP 333 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LP 333 (572)
.+.|.+.+... ...+|||+|||+|.++..++.. +|+++|+++.++..++. .+...+.. ..+...|.. -.
T Consensus 20 t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~-n~~~n~~~~v~~~~~d~~-~~ 93 (170)
T PF05175_consen 20 TRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKR-NAERNGLENVEVVQSDLF-EA 93 (170)
T ss_dssp HHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHH-HHHHTTCTTEEEEESSTT-TT
T ss_pred HHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-HHHhcCcccccccccccc-cc
Confidence 33445555421 4578999999999999988876 59999999988755543 33444554 333333321 12
Q ss_pred CCCCCeeEEEeccccccccCC-----hHHHHHHHHHhccCCeEEEEEE
Q 008262 334 YPSQAFDLIHCSRCRINWTRD-----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d-----~~~~L~ei~RvLKPGG~lv~st 376 (572)
.++++||+|+|+.- .+...+ ...++.++.+.|||||.|++..
T Consensus 94 ~~~~~fD~Iv~NPP-~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 94 LPDGKFDLIVSNPP-FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp CCTTCEEEEEE----SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceeEEEEccc-hhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 34689999999876 333233 2588999999999999997764
No 71
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.06 E-value=1.8e-10 Score=124.89 Aligned_cols=123 Identities=24% Similarity=0.396 Sum_probs=98.0
Q ss_pred CCCCCEEEEECCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
.+..+.|+|+..|.|.|+++|.+..|..|...|. ..........+||+-..+... +|.++..+++||+||+..++-.+
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhDW-CE~fsTYPRTYDLlHA~~lfs~~ 440 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHDW-CEAFSTYPRTYDLLHADGLFSLY 440 (506)
T ss_pred ccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccch-hhccCCCCcchhheehhhhhhhh
Confidence 3567899999999999999999998888887775 445556777889887766654 78999888999999999877666
Q ss_pred cCC--hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhh
Q 008262 352 TRD--DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELV 405 (572)
Q Consensus 352 ~~d--~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v 405 (572)
... ...+|.|++|+|||||++++.+. .....++..+++.+.|+..
T Consensus 441 ~~rC~~~~illEmDRILRP~G~~iiRD~---------~~vl~~v~~i~~~lrW~~~ 487 (506)
T PF03141_consen 441 KDRCEMEDILLEMDRILRPGGWVIIRDT---------VDVLEKVKKIAKSLRWEVR 487 (506)
T ss_pred cccccHHHHHHHhHhhcCCCceEEEecc---------HHHHHHHHHHHHhCcceEE
Confidence 433 35899999999999999999864 3444566777888888643
No 72
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.05 E-value=3.5e-09 Score=102.43 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~ 329 (572)
.+.....+.+.+. ..+..+|||+|||+|.++..++.+ +|+++|+++.++..++.... ..+... .+...+.
T Consensus 16 ~~~~r~~~~~~l~----~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~-~~~~~~i~~~~~d~ 90 (187)
T PRK08287 16 KEEVRALALSKLE----LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQ-RFGCGNIDIIPGEA 90 (187)
T ss_pred hHHHHHHHHHhcC----CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HhCCCCeEEEecCc
Confidence 3333444445554 235679999999999998877653 79999999988866554333 333332 2333333
Q ss_pred cCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. .++ .++||+|++.... .....++.++.++|+|||++++..
T Consensus 91 ~-~~~-~~~~D~v~~~~~~----~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 91 P-IEL-PGKADAIFIGGSG----GNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred h-hhc-CcCCCEEEECCCc----cCHHHHHHHHHHhcCCCeEEEEEE
Confidence 2 233 3689999987542 234678999999999999999875
No 73
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.05 E-value=1.6e-09 Score=109.99 Aligned_cols=93 Identities=22% Similarity=0.273 Sum_probs=66.2
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||+|||+|.++..++.. .|+++|+++.++..+..+. ...++...+. ++..+.+||+|+|+...
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~-~~~~~~~~~~------~~~~~~~fD~Vvani~~-- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA-ELNGVELNVY------LPQGDLKADVIVANILA-- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCceEE------EccCCCCcCEEEEcCcH--
Confidence 5689999999999988877654 5999999999886665433 3334321111 11122379999987432
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.....++.++.++|||||+++++..
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2235789999999999999999964
No 74
>PRK14967 putative methyltransferase; Provisional
Probab=99.03 E-value=4.7e-09 Score=104.53 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=69.7
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||+|||+|.++..++.. +|+++|+++.++..++.+. ...+....+...|... .+++++||+|+|+.....
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~-~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNA-LLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 4578999999999998887664 7999999998876554333 3334433344444433 245679999999753221
Q ss_pred ccC----------------C----hHHHHHHHHHhccCCeEEEEEE
Q 008262 351 WTR----------------D----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 351 w~~----------------d----~~~~L~ei~RvLKPGG~lv~st 376 (572)
-.. + ...++.++.++|||||.+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 111 0 2457889999999999999864
No 75
>PRK06202 hypothetical protein; Provisional
Probab=99.03 E-value=1.3e-09 Score=108.85 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCCchhHHHhcc--------CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~--------~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~s 344 (572)
.+..+|||||||+|.++..|++ .+|+|+|+++.|+..++.... ..+. .+...+.+.+++++++||+|+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~-~~~~--~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR-RPGV--TFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc-cCCC--eEEEEecccccccCCCccEEEE
Confidence 3567899999999998877753 179999999988855443211 1122 2333345667777889999999
Q ss_pred ccccccccCCh--HHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st 376 (572)
+.+++|. ++. ..+|+++.|++| |.+++..
T Consensus 136 ~~~lhh~-~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 136 NHFLHHL-DDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CCeeecC-ChHHHHHHHHHHHHhcC--eeEEEec
Confidence 9887776 553 479999999998 5555654
No 76
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.02 E-value=1.8e-09 Score=106.62 Aligned_cols=102 Identities=16% Similarity=0.269 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCC-CCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYP-SQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~e~LPfp-~~sFDlI~ss~~l~ 349 (572)
...+|||+|||+|.++..+++. .++++|+++.++..++..... .+. ...+...+...++.. .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKK-DPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 4678999999999998887655 799999999887655543332 333 233444455555543 47899999988755
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+. .++..+|.++.++|+|||.+++++.
T Consensus 124 ~~-~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 124 HV-PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hC-CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 55 7889999999999999999998863
No 77
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=2.7e-09 Score=105.16 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=73.4
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCC--cEEEecccc
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATR 330 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e 330 (572)
....+.+.+. ..+..+|||||||+|..+..+++ .+|+++|+++.++..++.+. ...+.. ..+...|..
T Consensus 60 ~~~~~~~~l~----~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l-~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 60 MVAMMCELIE----PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI-ERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHhcC----CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEECCcc
Confidence 3445555554 24567999999999998877654 27999999998876655333 334432 234444554
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
......++||+|++.....+. ..++.++|+|||+|++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEEEE
Confidence 433345799999988664433 357889999999998874
No 78
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=1.6e-09 Score=107.60 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=104.8
Q ss_pred CCCEEEEECCCCchhHHHhccC------CeEEEeCCccchHHHHH--HHHHHcCCCcEEEeccccCC--CCCCCCeeEEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQI--QFALERGAPAMVAAFATRRL--PYPSQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiSp~dl~~a~~--~~A~~rg~~~~~~~~d~e~L--Pfp~~sFDlI~ 343 (572)
+..+||+||||.|....-+++. .|.++|.|+..+.-... ++... ...+.+...+...+ |...+++|+|+
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~-~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES-RVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh-hhcccceeccchhccCCCCcCccceEE
Confidence 3348999999999877777654 68999999976532211 11111 12233444333333 46789999999
Q ss_pred eccccccccCCh-HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEEEeeccchhHH
Q 008262 344 CSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSC 422 (572)
Q Consensus 344 ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~iw~kpl~~~c 422 (572)
+..++....++. ..++.+++++|||||.+++.+. +...+..++-. -.+.+..++....+++..|-.+..+.-
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY-g~~DlaqlRF~------~~~~i~~nfYVRgDGT~~YfF~~eeL~ 222 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY-GRYDLAQLRFK------KGQCISENFYVRGDGTRAYFFTEEELD 222 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec-ccchHHHHhcc------CCceeecceEEccCCceeeeccHHHHH
Confidence 999888776665 5899999999999999999975 33333333321 122333455667788998999988888
Q ss_pred HHHHhcCCCCC
Q 008262 423 YLNREAGTIPP 433 (572)
Q Consensus 423 ~ll~~aGF~~p 433 (572)
.++.++||...
T Consensus 223 ~~f~~agf~~~ 233 (264)
T KOG2361|consen 223 ELFTKAGFEEV 233 (264)
T ss_pred HHHHhcccchh
Confidence 89999999553
No 79
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.00 E-value=1.3e-09 Score=113.12 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=77.6
Q ss_pred ccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEE
Q 008262 249 TQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVA 325 (572)
Q Consensus 249 ~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~ 325 (572)
..|..|...-.+..++.|..+ ..++.+|||+|||+|.++...+.. +|+++|+++..+..++ +.+..+++...+.
T Consensus 138 ~AFGTG~H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 138 MAFGTGHHPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDRIE 214 (295)
T ss_dssp SSS-SSHCHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTCEE
T ss_pred CcccCCCCHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCeeEE
Confidence 445555555444455555443 245689999999999877655443 7999999998775555 4455566655333
Q ss_pred eccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 326 AFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 326 ~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.... .....+.||+|+++-... -...++.++.++|+|||+|++|..
T Consensus 215 v~~~--~~~~~~~~dlvvANI~~~----vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 215 VSLS--EDLVEGKFDLVVANILAD----VLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp ESCT--SCTCCS-EEEEEEES-HH----HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred EEEe--cccccccCCEEEECCCHH----HHHHHHHHHHHhhCCCCEEEEccc
Confidence 2222 223358999999875422 225788889999999999999975
No 80
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.00 E-value=2.5e-09 Score=106.63 Aligned_cols=103 Identities=15% Similarity=0.284 Sum_probs=77.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-CCCCCeeEEEeccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-YPSQAFDLIHCSRCRI 349 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP-fp~~sFDlI~ss~~l~ 349 (572)
.+..+|||||||+|.++..+.+. +++++|+++.++..+..... ..+....+...+...++ ..++.||+|+++.++.
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHAL-ESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHH-HcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 35678999999999998888766 79999999987765543332 22333333334444443 3457999999998866
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|. .+...+|.++.++|+|||.++++..
T Consensus 126 ~~-~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 126 HV-PDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred cc-CCHHHHHHHHHHHcCCCcEEEEEec
Confidence 66 7888999999999999999999864
No 81
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.00 E-value=2.4e-09 Score=114.69 Aligned_cols=102 Identities=18% Similarity=0.289 Sum_probs=77.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCC--CCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRL--PYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~d~e~L--Pfp~~sFDlI~ss 345 (572)
.....+||||||+|.++..++.+ .++|+|+++.++..+..+ +...++.+. +...|+..+ .++++++|.|+++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~k-a~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQ-IELLNLKNLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHH-HHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 34568999999999999988865 899999999888766543 445565543 344455443 4788999999987
Q ss_pred cccccccCCh------HHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWTRDD------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~~d~------~~~L~ei~RvLKPGG~lv~st 376 (572)
.. ..|.... ..++.++.|+|+|||.+.+.|
T Consensus 200 FP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 200 FP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CC-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 54 5664332 479999999999999999987
No 82
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.99 E-value=8.2e-09 Score=103.47 Aligned_cols=116 Identities=18% Similarity=0.269 Sum_probs=79.1
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEecc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFA 328 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d 328 (572)
....+++.+.+.+. ....+|||+|||+|.++..++.. +++++|+++.++..+.. .+...+.. ..+...+
T Consensus 72 ~~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~d 145 (251)
T TIGR03534 72 DTEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARK-NAARLGLDNVTFLQSD 145 (251)
T ss_pred ChHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECc
Confidence 44556666666554 23468999999999999888764 79999999988865553 33344444 3344444
Q ss_pred ccCCCCCCCCeeEEEecccccc------ccCC-------------------hHHHHHHHHHhccCCeEEEEEE
Q 008262 329 TRRLPYPSQAFDLIHCSRCRIN------WTRD-------------------DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~h------w~~d-------------------~~~~L~ei~RvLKPGG~lv~st 376 (572)
... ++++++||+|+|+...+. +..+ ...++.++.++|+|||.+++..
T Consensus 146 ~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 146 WFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 433 456789999998653221 1100 1257889999999999999975
No 83
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.99 E-value=1.2e-10 Score=114.65 Aligned_cols=99 Identities=22% Similarity=0.280 Sum_probs=76.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc-CCC-CCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR-RLP-YPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e-~LP-fp~~sFDlI~ss~~l 348 (572)
+..+++||+|||||.++..|... .++|+|+|.+|+ +.|.+++.--...+.+.. -++ ..++.||+|++..++
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl-----~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENML-----AKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHhhccCCchhHHHH-----HHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 45899999999999999999887 899999998877 666677653322222222 122 346789999998875
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+ .+.+.++.-+...|+|||.|.||..
T Consensus 199 ~Yl-G~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 199 PYL-GALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred Hhh-cchhhHHHHHHHhcCCCceEEEEec
Confidence 544 7889999999999999999999953
No 84
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=2.4e-09 Score=110.27 Aligned_cols=129 Identities=20% Similarity=0.224 Sum_probs=86.2
Q ss_pred eeccCCCcccccc-HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHH
Q 008262 242 FKFPGGGTQFIHG-ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL 316 (572)
Q Consensus 242 ~~Fpggg~~f~~g-~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~ 316 (572)
+.|-....+|.++ .|.-.+-|++.++. ....+|||+|||.|.++..|++. +++-+|++...+..++.+.+
T Consensus 129 ~~~~t~pGVFS~~~lD~GS~lLl~~l~~----~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~- 203 (300)
T COG2813 129 LTFKTLPGVFSRDKLDKGSRLLLETLPP----DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA- 203 (300)
T ss_pred eEEEeCCCCCcCCCcChHHHHHHHhCCc----cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH-
Confidence 3444444455433 23334456666663 23348999999999999999876 78999999877755554433
Q ss_pred HcCCCc-EEEeccccCCCCCCCCeeEEEeccccccccCChH----HHHHHHHHhccCCeEEEEEEC
Q 008262 317 ERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDG----ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 317 ~rg~~~-~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~----~~L~ei~RvLKPGG~lv~st~ 377 (572)
..++.. .+...+ -..+..+ +||+|+|+.-++.-..-.. +++.+..+.|++||.|++...
T Consensus 204 ~N~~~~~~v~~s~-~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 204 ANGVENTEVWASN-LYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HcCCCccEEEEec-ccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 344444 333322 3334444 9999999988654433233 899999999999999999964
No 85
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.95 E-value=3.1e-09 Score=103.42 Aligned_cols=87 Identities=24% Similarity=0.287 Sum_probs=64.0
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-C-CCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-L-PYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~-L-Pfp~~sFDlI~ss~~l 348 (572)
+..+|||||||+|.++..+++. .++|+|+++.++.. +..++... ...+.+. + ++++++||+|+|+.++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~-----a~~~~~~~--~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLA-----CVARGVNV--IQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHH-----HHHcCCeE--EEEEhhhcccccCCCCcCEEEEhhHh
Confidence 3468999999999999888654 67999999876633 33444432 2334433 4 4778899999999875
Q ss_pred ccccCChHHHHHHHHHhccC
Q 008262 349 INWTRDDGILLLEVNRMLRA 368 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKP 368 (572)
+|. .++..+|+++.|++++
T Consensus 86 ~~~-~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 86 QAT-RNPEEILDEMLRVGRH 104 (194)
T ss_pred HcC-cCHHHHHHHHHHhCCe
Confidence 555 8889999999887664
No 86
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.95 E-value=3.2e-09 Score=105.91 Aligned_cols=98 Identities=14% Similarity=0.056 Sum_probs=72.7
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC----------------CcEEEeccccCCCCC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA----------------PAMVAAFATRRLPYP 335 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~----------------~~~~~~~d~e~LPfp 335 (572)
+..+|||+|||.|..+..|+++ +|+|+|+|+..+..+. .++++ ...+...|...++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~----~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF----AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH----HHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 4579999999999999999988 8999999998775432 23332 123344455555432
Q ss_pred -CCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 336 -SQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 336 -~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
...||+|+...+++|+..+. ..++..+.++|||||.+++.
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 25899999888878885544 58999999999999975554
No 87
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.94 E-value=6.3e-09 Score=103.11 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=73.6
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEecccc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATR 330 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e 330 (572)
.....+.+.+. ..+..+|||||||+|.++..|+.. +|+++|+++.++..++.... ..+.. ..+...|..
T Consensus 63 ~~~~~~~~~l~----~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~-~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 63 HMVAIMCELLD----LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK-KLGYDNVEVIVGDGT 137 (212)
T ss_pred HHHHHHHHHcC----CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEECCcc
Confidence 34445555554 246689999999999998776543 79999999988866654333 33443 344444555
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
....+.+.||+|++.....+ ....+.+.|||||.|++..
T Consensus 138 ~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 138 LGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEE
Confidence 44445688999998754322 2346778999999998863
No 88
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.93 E-value=8.8e-09 Score=107.41 Aligned_cols=116 Identities=15% Similarity=0.160 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHc-CCCcEEEeccccC-CCCCCCC----eeEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRR-LPYPSQA----FDLI 342 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~r-g~~~~~~~~d~e~-LPfp~~s----FDlI 342 (572)
+..+|||+|||+|..+..|++. +|+++|+|+.|+..++.+..... ++.......|+.+ ++++... ..++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4578999999999988877644 79999999999977766554432 2333333445544 4444332 2344
Q ss_pred EeccccccccC-ChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH
Q 008262 343 HCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390 (572)
Q Consensus 343 ~ss~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w 390 (572)
++..++.++.. +...+|++++++|+|||.|++... .......+..+|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d-~~~~~~~~~~aY 190 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD-LVKDPAVLEAAY 190 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc-CCCCHHHHHHhh
Confidence 44334344422 224799999999999999999854 344444444443
No 89
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.92 E-value=7.3e-09 Score=102.61 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=73.1
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR 331 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~ 331 (572)
....+.+.+. ..+..+|||||||+|.++..|++. .|+++|+++.++..+.. .+.+.+... .+...|...
T Consensus 65 ~~~~~~~~l~----~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~-~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 65 MVAMMTELLE----LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAER-RLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHhC----CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHCCCCCeEEEECCccc
Confidence 3445555554 246689999999999999888764 39999999988866553 334445433 333445444
Q ss_pred CCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.....+.||+|++..... .+...+.+.|+|||+|++..
T Consensus 140 ~~~~~~~fD~Ii~~~~~~-------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAAGP-------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccCCCCEEEEcCCcc-------cccHHHHHhcCcCcEEEEEE
Confidence 333346899999875432 33456889999999999874
No 90
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.90 E-value=1.7e-08 Score=98.49 Aligned_cols=113 Identities=17% Similarity=0.062 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc----CCeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~ 329 (572)
.......+.+.+. ..+..+|||+|||+|.++..++. .+|+++|+++.++..++.+. .+.+... .+...|+
T Consensus 25 ~~~v~~~l~~~l~----~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~-~~~~~~~v~~~~~d~ 99 (196)
T PRK07402 25 KREVRLLLISQLR----LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNC-DRFGVKNVEVIEGSA 99 (196)
T ss_pred HHHHHHHHHHhcC----CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCCeEEEECch
Confidence 3344444555554 24567999999999999887753 27999999998886665433 3344432 3333343
Q ss_pred cC-CCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 330 RR-LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 330 e~-LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. ++.....+|.|+... ..+...++.++.++|+|||++++...
T Consensus 100 ~~~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 100 PECLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 22 222223467765421 23457899999999999999999863
No 91
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.90 E-value=1.7e-09 Score=107.44 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=67.1
Q ss_pred CEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEE-------eccccCCCCCCCCeeEEEecc
Q 008262 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVA-------AFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~-------~~d~e~LPfp~~sFDlI~ss~ 346 (572)
+.++|+|||+|..++.+++. +|+|+|+++.|+ +.+.+.. +...+ ..+...|--.++|.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL-----~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAML-----KVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHH-----HHhhcCC-CcccccCCccccccccccccCCCcceeeehhhh
Confidence 48999999999766777766 899999998877 4554332 22111 112233333489999999998
Q ss_pred ccccccCChHHHHHHHHHhccCCe-EEEEE
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGG-YFAWA 375 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG-~lv~s 375 (572)
| +|| -|.+.++++++|+||+.| .+.+-
T Consensus 109 a-~HW-Fdle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 109 A-VHW-FDLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred h-HHh-hchHHHHHHHHHHcCCCCCEEEEE
Confidence 8 899 577999999999999877 55444
No 92
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.89 E-value=1e-08 Score=106.84 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=73.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.+..+|||||||+|.++..++++ +++++|+ +.++..+. +.+.+.+.. ..+...|....+++ .+|+|+++.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCC--CCCEEEeEh
Confidence 45689999999999999888766 6889997 45554333 344444543 23444455555555 369999888
Q ss_pred ccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++|..+. ..+|++++++|||||.+++.+.
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 888885443 5799999999999999999974
No 93
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.88 E-value=2e-08 Score=105.96 Aligned_cols=104 Identities=22% Similarity=0.194 Sum_probs=76.4
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEeccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
.++.+|||+|||+|.++..++.. .++|+|+++.|+..+..+. ...+... .+...|...+|+.+++||+|+++....
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl-~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINL-EHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHH-HHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 45678999999999887665433 8999999999987665443 3344443 455567888998888999999964221
Q ss_pred c-------ccCC-hHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 N-------WTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 h-------w~~d-~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. ...+ ...+|.++.|+|||||++++..+
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 1 1111 36899999999999999999864
No 94
>PLN03075 nicotianamine synthase; Provisional
Probab=98.88 E-value=1.2e-08 Score=105.73 Aligned_cols=102 Identities=7% Similarity=0.116 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCchhHHHh-cc-----CCeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYL-LP-----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L-~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss 345 (572)
.+++|||||||.|.++..+ +. ..++|+|+++.++..++.......++. ..+...|...++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999977443332 21 169999999988876664443334432 345445554443234789999998
Q ss_pred ccccccc-CChHHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWT-RDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~-~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++++|. .+...+|.++.+.|+|||+|++.+
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 778885 567899999999999999999985
No 95
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.87 E-value=1.2e-08 Score=85.25 Aligned_cols=99 Identities=23% Similarity=0.313 Sum_probs=69.1
Q ss_pred EEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC-CCCCeeEEEecccccccc
Q 008262 277 VVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY-PSQAFDLIHCSRCRINWT 352 (572)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf-p~~sFDlI~ss~~l~hw~ 352 (572)
++||+|||+|.++..++.. +++++|+++..+..++............+...+...... ..++||+|++..++.++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 4899999999999888862 899999998766444321111111122233334444432 457899999988755534
Q ss_pred CChHHHHHHHHHhccCCeEEEEE
Q 008262 353 RDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 353 ~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
.....++..+.+.|||||.++++
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 66689999999999999999876
No 96
>PRK14968 putative methyltransferase; Provisional
Probab=98.87 E-value=3.6e-08 Score=94.21 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
+..+|||+|||+|.++..++.+ +|+++|+++.++..++.... ..+.. ..+...|... ++.+++||+|+++...
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAK-LNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHH-HcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 4578999999999999888766 89999999988765543332 23332 2233333322 3455689999987543
Q ss_pred cccc----------------CC----hHHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWT----------------RD----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~----------------~d----~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+.. .+ ...+++++.++|||||.+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3211 01 2457999999999999998875
No 97
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.87 E-value=2.7e-08 Score=96.42 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=64.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 339 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--------fp~~sF 339 (572)
.++.+|||+|||+|.++..++.+ +|+++|+++.+ ...+ ..+...|..... +++++|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~--i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIEN--VDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCC--ceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 45689999999999988777543 59999999853 1112 223333443322 456789
Q ss_pred eEEEecccc---ccccCC-------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 340 DLIHCSRCR---INWTRD-------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 340 DlI~ss~~l---~hw~~d-------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+|+|..+. .+|..+ ...+|.++.++|+|||.+++..+
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 999986431 123222 25789999999999999999753
No 98
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.85 E-value=1.1e-08 Score=100.27 Aligned_cols=86 Identities=21% Similarity=0.320 Sum_probs=58.5
Q ss_pred CCCEEEEECCCCchhHHHhccC-CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~ 352 (572)
+...|-|+|||.+.++..+.+. .|...|+.... ..+...|+..+|+++++.|+++++.++ ..
T Consensus 72 ~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n---------------~~Vtacdia~vPL~~~svDv~VfcLSL--MG 134 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN---------------PRVTACDIANVPLEDESVDVAVFCLSL--MG 134 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S---EEEEESS-SS---------------TTEEES-TTS-S--TT-EEEEEEES-----S
T ss_pred CCEEEEECCCchHHHHHhcccCceEEEeeccCCC---------------CCEEEecCccCcCCCCceeEEEEEhhh--hC
Confidence 4468999999999999888765 79999987531 225566889999999999999986543 34
Q ss_pred CChHHHHHHHHHhccCCeEEEEEE
Q 008262 353 RDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 353 ~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+...++.|+.|+|||||.|+|+.
T Consensus 135 Tn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 135 TNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp S-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcHHHHHHHHheeccCcEEEEEE
Confidence 688999999999999999999996
No 99
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.82 E-value=4.4e-08 Score=95.79 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=69.7
Q ss_pred CCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCC-C-cEEEeccccC-CCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGA-P-AMVAAFATRR-LPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~-~-~~~~~~d~e~-LPfp~~sFDlI~s 344 (572)
.+..+|||+|||+|.++..++. .+|+++|+++.++..++.+ +...++ . ..+...+... ++...+.||+|++
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n-~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN-AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 4668999999999998876543 2799999999888655533 333442 2 2333334433 3333468999997
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
... ..+...++.++.++|||||.+++..
T Consensus 118 ~~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 118 GGG----SEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCC----cccHHHHHHHHHHHcCCCcEEEEEe
Confidence 532 2456789999999999999999864
No 100
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.81 E-value=3.5e-08 Score=97.35 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=70.4
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYP 335 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LPfp 335 (572)
...+.+.+. ..+..+|||+|||+|.++..|+.. +|+++|+++.++..+...+.. .+... .+...+.......
T Consensus 67 ~~~l~~~l~----~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 67 VARMTELLE----LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-LGLHNVSVRHGDGWKGWPA 141 (212)
T ss_pred HHHHHHhcC----CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-CCCCceEEEECCcccCCCc
Confidence 344445554 245689999999999988876654 799999998877655543333 34432 3333343221113
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+.||+|++.....+ +..++.+.|+|||.+++..
T Consensus 142 ~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 142 YAPFDRILVTAAAPE-------IPRALLEQLKEGGILVAPV 175 (212)
T ss_pred CCCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEE
Confidence 478999998754322 3456789999999999985
No 101
>PRK04266 fibrillarin; Provisional
Probab=98.81 E-value=3.1e-08 Score=99.35 Aligned_cols=98 Identities=18% Similarity=0.172 Sum_probs=67.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC----CCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----LPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~----LPfp~~sFDlI~s 344 (572)
.++.+|||+|||+|.++..|++. .|+++|+++.|+.... +.++++ ........|... .++. ++||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 46689999999999999888775 6999999999886544 344433 122233334432 1223 56999996
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
... ..+ ....++.++.|+|||||.++++.
T Consensus 148 d~~-~p~--~~~~~L~~~~r~LKpGG~lvI~v 176 (226)
T PRK04266 148 DVA-QPN--QAEIAIDNAEFFLKDGGYLLLAI 176 (226)
T ss_pred CCC-Chh--HHHHHHHHHHHhcCCCcEEEEEE
Confidence 422 111 11356899999999999999973
No 102
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.79 E-value=8.4e-09 Score=91.26 Aligned_cols=100 Identities=27% Similarity=0.389 Sum_probs=69.2
Q ss_pred CEEEEECCCCchhHHHhcc---CCeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCC--CCCCCeeEEEecccc
Q 008262 276 RVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLP--YPSQAFDLIHCSRCR 348 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~---~~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LP--fp~~sFDlI~ss~~l 348 (572)
.+|||+|||+|.++..+++ .+++++|+++..+..+...... .+. ...+...|...+. +++++||+|+++.-.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5799999999988877764 3899999999766444433332 332 3445555655554 678999999998765
Q ss_pred ccccCC-------hHHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWTRD-------DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~~d-------~~~~L~ei~RvLKPGG~lv~st 376 (572)
...... ...+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 533211 2478999999999999999875
No 103
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.77 E-value=1.3e-07 Score=96.36 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e 330 (572)
.+.+++.+...+. ..+..+|||+|||+|.++..++.. .|+++|+++.++..++............+...|..
T Consensus 93 te~l~~~~~~~~~----~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~ 168 (275)
T PRK09328 93 TEELVEWALEALL----LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWF 168 (275)
T ss_pred cHHHHHHHHHhcc----ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence 3445555543333 235578999999999988888754 79999999988866554433111112233333332
Q ss_pred CCCCCCCCeeEEEeccccccc------c-------------------CChHHHHHHHHHhccCCeEEEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINW------T-------------------RDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw------~-------------------~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. ++.+++||+|+|+...+.. . .....++.++.++|||||++++..
T Consensus 169 ~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 169 E-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred C-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1 2335799999986432211 0 011367888889999999999974
No 104
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.74 E-value=4.6e-08 Score=98.10 Aligned_cols=85 Identities=24% Similarity=0.332 Sum_probs=67.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC-CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
.....|-|+|||.+.++. ..+ .|+.+|+.+. ...+...|+.++|++++|.|+++++. .-.
T Consensus 179 ~~~~vIaD~GCGEakiA~--~~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CL--SLM 239 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS--SERHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCL--SLM 239 (325)
T ss_pred cCceEEEecccchhhhhh--ccccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeH--hhh
Confidence 345679999999998875 222 8999988653 22345567899999999999999754 444
Q ss_pred cCChHHHHHHHHHhccCCeEEEEEE
Q 008262 352 TRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 352 ~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..+...++.|++|+||+||.|+++.
T Consensus 240 gtn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 240 GTNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred cccHHHHHHHHHHHhccCceEEEEe
Confidence 5788999999999999999999996
No 105
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.73 E-value=1.9e-07 Score=100.85 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=75.9
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~ 329 (572)
..+..++.+.+.+. +..+|||+|||+|.++..++.. +|+++|+|+.++..++.+. ...+....+...|.
T Consensus 237 eTE~LVe~aL~~l~------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa-~~~g~rV~fi~gDl 309 (423)
T PRK14966 237 ETEHLVEAVLARLP------ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNA-ADLGARVEFAHGSW 309 (423)
T ss_pred cHHHHHHHhhhccC------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCcEEEEEcch
Confidence 44555666555443 2358999999999998877642 7999999999987665443 33444444444454
Q ss_pred cCCCC-CCCCeeEEEecccccccc--------------------CCh----HHHHHHHHHhccCCeEEEEEE
Q 008262 330 RRLPY-PSQAFDLIHCSRCRINWT--------------------RDD----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e~LPf-p~~sFDlI~ss~~l~hw~--------------------~d~----~~~L~ei~RvLKPGG~lv~st 376 (572)
....+ ..++||+|+|+...+.-. .+. ..++.++.+.|+|||++++..
T Consensus 310 ~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 310 FDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred hccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33222 245899999976432110 011 256777788999999998874
No 106
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.73 E-value=8.8e-08 Score=95.99 Aligned_cols=104 Identities=16% Similarity=0.095 Sum_probs=78.8
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHH------------HHHcCCCcEEEeccccCCCCC---C
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQF------------ALERGAPAMVAAFATRRLPYP---S 336 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~------------A~~rg~~~~~~~~d~e~LPfp---~ 336 (572)
+..+||+.|||.|.-+..|+++ +|+|+|+|+..+.....+. ...++....+...|...++.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 4579999999999999999988 8999999998775543211 011233445666677777532 2
Q ss_pred CCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 337 QAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.||+|+-..+++++.++. ..+.+.+.++|+|||.+++.++
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 5899999888888886665 5899999999999999888753
No 107
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.71 E-value=3.6e-08 Score=93.49 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=61.3
Q ss_pred EEEeCCccchHHHHHHHHHHc--C-CCcEEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEE
Q 008262 298 ITMSIAPKDVHENQIQFALER--G-APAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAW 374 (572)
Q Consensus 298 ~gvDiSp~dl~~a~~~~A~~r--g-~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~ 374 (572)
+|+|+|+.|+..++.+..... + ....+...|++.+|+++++||+|++..+++++ .|...+|+|++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEE
Confidence 489999999976653332111 1 12345566889999999999999998775555 8899999999999999999999
Q ss_pred EEC
Q 008262 375 AAQ 377 (572)
Q Consensus 375 st~ 377 (572)
.+.
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 875
No 108
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.69 E-value=9.7e-08 Score=96.56 Aligned_cols=93 Identities=19% Similarity=0.248 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
...++||||+|.|..+..|+.. +|++.++|+.|. ..-+++|.... +..++.-.+..||+|.|.+++- =
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr-----~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNvLD-R 163 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMR-----WRLSKKGFTVL----DIDDWQQTDFKFDVISCLNVLD-R 163 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHH-----HHHHhCCCeEE----ehhhhhccCCceEEEeehhhhh-c
Confidence 5678999999999999999876 899999998875 44455776432 2223333356899999998744 4
Q ss_pred cCChHHHHHHHHHhccCCeEEEEEE
Q 008262 352 TRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 352 ~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.+|..+|+++++.|+|+|.++++.
T Consensus 164 c~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 164 CDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred cCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 4888999999999999999999984
No 109
>PRK00811 spermidine synthase; Provisional
Probab=98.68 E-value=2.2e-07 Score=96.21 Aligned_cols=103 Identities=13% Similarity=0.086 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc-----CCCcEEEeccccC-CCCCCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-----GAPAMVAAFATRR-LPYPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r-----g~~~~~~~~d~e~-LPfp~~sFDlI 342 (572)
.++++||+||||+|.++..+++. +|+++|+++.++..+...+.... .....+...|... +....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45689999999999999988765 69999999988866554333211 1122333344322 33346789999
Q ss_pred EeccccccccCCh----HHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDD----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~----~~~L~ei~RvLKPGG~lv~st 376 (572)
++... .++.... ..+++++.++|+|||.+++..
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 98643 4442221 477899999999999999864
No 110
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.68 E-value=1.6e-07 Score=95.05 Aligned_cols=103 Identities=21% Similarity=0.324 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCC--CCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP--YPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LP--fp~~sFDlI~ss 345 (572)
...+|||+|||+|.++..++++ +|++||+.+.+...++...+.. ++. ..+...|...+. ....+||+|+|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln-~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN-PLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC-cchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 4789999999999999999887 7999999998876666555442 221 234444555543 334579999998
Q ss_pred cccccccC-----------------ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTR-----------------DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~-----------------d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.-...-.. +.+.+++-+.++|||||++.+...
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 75433222 235788889999999999999964
No 111
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.68 E-value=7.8e-08 Score=101.64 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=69.1
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHc------C----CCcEEEeccccC------CCC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER------G----APAMVAAFATRR------LPY 334 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~r------g----~~~~~~~~d~e~------LPf 334 (572)
+..+|||||||-|.-....... .++|+|++...+.++..+...-+ . ..+.+...|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999988655444443 79999999998887776652211 1 223333333321 222
Q ss_pred CCCCeeEEEeccccccccCChH---HHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWTRDDG---ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~---~~L~ei~RvLKPGG~lv~st~ 377 (572)
....||+|-|-.++|+...... .+|..+.+.|||||+|+.+++
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2359999999988777666653 699999999999999999975
No 112
>PTZ00146 fibrillarin; Provisional
Probab=98.67 E-value=6.4e-08 Score=100.07 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=67.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC---CCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR---LPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~---LPfp~~sFDlI~s 344 (572)
.+..+|||+|||+|.++..+++. .|+++|+++.+.. ..++.+..+. .......|+.. +....++||+|++
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~-dLl~~ak~r~-NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR-DLTNMAKKRP-NIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH-HHHHHhhhcC-CCEEEECCccChhhhhcccCCCCEEEE
Confidence 56689999999999999998875 5999999986542 3334444431 22233334322 2223468999998
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
... + .++...++.++.++|||||+|++.
T Consensus 209 Dva--~-pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 209 DVA--Q-PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred eCC--C-cchHHHHHHHHHHhccCCCEEEEE
Confidence 743 2 123346777999999999999996
No 113
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.67 E-value=4.5e-07 Score=93.96 Aligned_cols=101 Identities=15% Similarity=0.224 Sum_probs=69.1
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEeccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
+..+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...+.. ..+...|... ++++++||+|+|+.-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n-~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 3468999999999999888764 799999999888666543 3444543 2334444321 234568999999732
Q ss_pred ccc----------ccCC--------------hHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RIN----------WTRD--------------DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~h----------w~~d--------------~~~~L~ei~RvLKPGG~lv~st 376 (572)
... +..+ ...++.++.++|+|||++++..
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 111 0001 1367889999999999999875
No 114
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.67 E-value=3.6e-07 Score=94.52 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEecc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFA 328 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d 328 (572)
.+..++.+.+.+.. ..+..+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...+.. ..+...|
T Consensus 98 te~lv~~~l~~~~~---~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n-~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 98 TEELVEKALASLIS---QNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN-AEKNQLEHRVEFIQSN 173 (284)
T ss_pred cHHHHHHHHHHhhh---cCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECc
Confidence 44555555444321 122268999999999988888753 799999999888665543 3333443 3343334
Q ss_pred ccCCCCCCCCeeEEEeccccc------------cccC------------ChHHHHHHHHHhccCCeEEEEEE
Q 008262 329 TRRLPYPSQAFDLIHCSRCRI------------NWTR------------DDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~------------hw~~------------d~~~~L~ei~RvLKPGG~lv~st 376 (572)
... +++.+.||+|+|+.-.+ ++.+ ....++.++.+.|+|||++++..
T Consensus 174 ~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 174 LFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred hhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 322 34445899999973211 1101 12368899999999999999885
No 115
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.66 E-value=2.7e-07 Score=100.86 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=73.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--CCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--fp~~sFDlI~ss~ 346 (572)
.++.+|||+|||+|..+..+++. .|+++|+++.++...+. .+...+....+...|...++ +..++||.|++..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~-n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRE-NLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45689999999999988887654 79999999998866653 33444554445555665554 3457899999543
Q ss_pred c-c----------ccccCCh----------HHHHHHHHHhccCCeEEEEEEC
Q 008262 347 C-R----------INWTRDD----------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~-l----------~hw~~d~----------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. . ..|.... ..+|.++.++|||||++++++-
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 1 1 1122121 2689999999999999999973
No 116
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.60 E-value=1.5e-07 Score=89.61 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=70.7
Q ss_pred HHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCC
Q 008262 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337 (572)
Q Consensus 260 ~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~ 337 (572)
+.+.+.+. ..+..+|||||||+|.++..++++ +|+++|+++.++...+..... .....+...|...+++++.
T Consensus 3 ~~i~~~~~----~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~ 76 (169)
T smart00650 3 DKIVRAAN----LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKL 76 (169)
T ss_pred HHHHHhcC----CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCcccc
Confidence 34444444 234578999999999999999886 899999999877555433321 1123455567788888777
Q ss_pred CeeEEEeccccccccCChHHHHHHHHHh--ccCCeEEEEE
Q 008262 338 AFDLIHCSRCRINWTRDDGILLLEVNRM--LRAGGYFAWA 375 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~~~~L~ei~Rv--LKPGG~lv~s 375 (572)
.||.|+++.. .+.. ...+..+.+. +.++|.|++.
T Consensus 77 ~~d~vi~n~P-y~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 77 QPYKVVGNLP-YNIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CCCEEEECCC-cccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 8999998744 3432 2334433332 4588888777
No 117
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.60 E-value=9.3e-07 Score=90.02 Aligned_cols=117 Identities=19% Similarity=0.214 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~ 329 (572)
.....++.+...+.. .....+|||+|||+|.++..++.. +|+++|+++.++..++.+. ...+. .+...|.
T Consensus 69 ~Te~Lv~~~l~~~~~---~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~-~~~~~--~~~~~D~ 142 (251)
T TIGR03704 69 RTEFLVDEAAALARP---RSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL-ADAGG--TVHEGDL 142 (251)
T ss_pred cHHHHHHHHHHhhcc---cCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCC--EEEEeec
Confidence 345556655554431 123458999999999998887643 7999999998886655443 33332 2333343
Q ss_pred cC-CCC-CCCCeeEEEecccccccc---------------------CC----hHHHHHHHHHhccCCeEEEEEE
Q 008262 330 RR-LPY-PSQAFDLIHCSRCRINWT---------------------RD----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e~-LPf-p~~sFDlI~ss~~l~hw~---------------------~d----~~~~L~ei~RvLKPGG~lv~st 376 (572)
.. ++- ..+.||+|+++.-.+... .+ ...++..+.++|||||.+++..
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 32 221 135799999986432110 01 1267777889999999999986
No 118
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.57 E-value=1.1e-07 Score=98.04 Aligned_cols=105 Identities=20% Similarity=0.257 Sum_probs=73.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcC------CCcEEEeccc------cCCCCCCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG------APAMVAAFAT------RRLPYPSQ 337 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg------~~~~~~~~d~------e~LPfp~~ 337 (572)
.+...+||+|||-|.-+...... .++|+||+...+.+++.++-.-++ ..+.+..+|+ +.+++.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 35577999999998655544443 899999998888777654432221 2334444442 34566666
Q ss_pred CeeEEEeccccccccCCh---HHHHHHHHHhccCCeEEEEEEC
Q 008262 338 AFDLIHCSRCRINWTRDD---GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~---~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+||+|-|-+|+|.-.... ..+|.++.+.|||||+|+-+.+
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 799999988854433333 3799999999999999988853
No 119
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.56 E-value=1.2e-06 Score=91.84 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=68.0
Q ss_pred CEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
.+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...+.. ..+...|... .+++++||+|+|+.-.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n-~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 68999999999998888754 799999999988666543 3334442 3334444322 23456899999974211
Q ss_pred c------------ccC--------C----hHHHHHHHHHhccCCeEEEEEE
Q 008262 350 N------------WTR--------D----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 350 h------------w~~--------d----~~~~L~ei~RvLKPGG~lv~st 376 (572)
. +.+ + ...++.++.++|+|||++++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 100 1 1367899999999999999975
No 120
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.55 E-value=4.9e-07 Score=95.25 Aligned_cols=106 Identities=12% Similarity=-0.012 Sum_probs=70.6
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRL 332 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~L 332 (572)
...+.+.+. ..+..+|||||||+|.++..+++. .|+++|+++.++..++. .+...+... .+...|....
T Consensus 69 ~a~ll~~L~----i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~-~l~~~g~~nV~~i~gD~~~~ 143 (322)
T PRK13943 69 MALFMEWVG----LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR-NVRRLGIENVIFVCGDGYYG 143 (322)
T ss_pred HHHHHHhcC----CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEeCChhhc
Confidence 344444443 235679999999999999888753 49999999988865553 333445443 3334454444
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
....+.||+|++..... .....+.+.|+|||.+++..
T Consensus 144 ~~~~~~fD~Ii~~~g~~-------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 VPEFAPYDVIFVTVGVD-------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccccCCccEEEECCchH-------HhHHHHHHhcCCCCEEEEEe
Confidence 44446899999864322 23345788999999998864
No 121
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.54 E-value=7.9e-07 Score=97.40 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=72.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC----CCCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP----YPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP----fp~~sFDlI 342 (572)
.++.+|||+|||+|..+..+++. .|+++|+++.++...+.+ +...|... .+...|...++ +..++||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 45689999999999888777653 699999999988666543 34455543 34445665554 446789999
Q ss_pred Eecc-c----cccccCC----------------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 343 HCSR-C----RINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 343 ~ss~-~----l~hw~~d----------------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++.. | .++-.++ ...+|.++.++|||||+++.+|-
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 9632 1 1111111 24789999999999999999973
No 122
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.54 E-value=7.8e-07 Score=97.21 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=70.6
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEE--EeccccCCCC--CCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMV--AAFATRRLPY--PSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~--~~~d~e~LPf--p~~sFDlI~s 344 (572)
.++.+|||+|||+|..+..+++. .|+++|+++.++.....+ +...|....+ ...+....++ ..++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n-~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYEN-LKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 45689999999999888776653 799999999988666543 3344554322 2233333333 4678999995
Q ss_pred c----cc-cccccCC----------------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 345 S----RC-RINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 345 s----~~-l~hw~~d----------------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. .. .++-.++ ...+|.++.++|||||.|++++.
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3 21 1111111 24799999999999999999974
No 123
>PRK04457 spermidine synthase; Provisional
Probab=98.52 E-value=5.8e-07 Score=92.14 Aligned_cols=117 Identities=13% Similarity=0.166 Sum_probs=73.0
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc-CCCcEEEeccccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r-g~~~~~~~~d~e~ 331 (572)
.|.+.+...+.. ...+++|||||||+|.++..++.. +|+++|+++.++..++..+.... .....+...|...
T Consensus 52 ~y~~~m~~~l~~---~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~ 128 (262)
T PRK04457 52 AYTRAMMGFLLF---NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE 128 (262)
T ss_pred HHHHHHHHHHhc---CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH
Confidence 455555433321 235678999999999999887654 79999999987755443332211 1122333344322
Q ss_pred -CCCCCCCeeEEEeccccc-cccC--ChHHHHHHHHHhccCCeEEEEEE
Q 008262 332 -LPYPSQAFDLIHCSRCRI-NWTR--DDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 332 -LPfp~~sFDlI~ss~~l~-hw~~--d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.-..++||+|++...-. .... ....+++++.++|+|||.+++..
T Consensus 129 ~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 129 YIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred HHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 222246899999753211 1111 12589999999999999999863
No 124
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.52 E-value=7.4e-07 Score=91.32 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=71.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.++.+|||+|||+|..+..+++. .|+++|+++.++.....+. ...+... .+...|...++...+.||.|++..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~-~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANI-NRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH-HHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45688999999999988776542 7999999999886655443 3345443 334445555555556799999632
Q ss_pred c-c--cc----------ccC--------ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 347 C-R--IN----------WTR--------DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~-l--~h----------w~~--------d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
- . -. |.. ....+|.++.++|||||+++.++-
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 1 0 11 111 112589999999999999999974
No 125
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.51 E-value=1.8e-06 Score=88.81 Aligned_cols=103 Identities=14% Similarity=0.086 Sum_probs=67.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcC----CCcEEEeccc-cCCCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFAT-RRLPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg----~~~~~~~~d~-e~LPfp~~sFDlI~ 343 (572)
.++++||+||||+|.++..++.. +++++|+++.++..+...+....+ ....+...|. +-+....++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34569999999999988887654 699999999877655443322111 1112222232 11222257899999
Q ss_pred eccccccccCC----hHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d----~~~~L~ei~RvLKPGG~lv~st 376 (572)
+... .+.... ...+++.+.++|+|||.+++..
T Consensus 151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 8643 333222 2578899999999999999874
No 126
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.50 E-value=7.9e-07 Score=97.33 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=72.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC-CCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP-YPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP-fp~~sFDlI~ss 345 (572)
.++.+|||+|||+|..+.++++. .|+++|+++.++.....+ +...|... .+...|...++ +.+++||.|++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n-~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH-AKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 45678999999999877666542 799999999988666543 44456543 34445666665 456789999963
Q ss_pred cc---cccccCCh------------------HHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RC---RINWTRDD------------------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~---l~hw~~d~------------------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. ...+..++ ..+|.++.+.|||||.++++|-
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 21 11111111 3568999999999999999973
No 127
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=6.3e-07 Score=98.45 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=71.2
Q ss_pred CCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEec-
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCS- 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LPfp~~sFDlI~ss- 345 (572)
.++.+|||+|||+|..+..+++ ..|+++|+++.++..++. .+...|+.. .+...|...++ ++++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~-~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRS-HASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-HHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 3567899999999987766654 279999999999866553 444456543 34444555554 45789999952
Q ss_pred ---ccc-------ccccCCh----------HHHHHHHHHhccCCeEEEEEEC
Q 008262 346 ---RCR-------INWTRDD----------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ---~~l-------~hw~~d~----------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
... ..|..+. ..+|.++.++|||||.+++++.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 211 1121111 2589999999999999999984
No 128
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=2.5e-06 Score=88.35 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=73.0
Q ss_pred EEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccccc
Q 008262 277 VVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (572)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~ 352 (572)
+|||||||+|..+..++.. +|+++|+|+..+.-+. +.+...++....... ..-+.--.+.||+|+|+.-.+.-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~-~dlf~~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQ-SDLFEPLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEe-eecccccCCceeEEEeCCCCCCCc
Confidence 7999999999999888875 7999999998775554 344555543322222 122221234899999987443321
Q ss_pred ----------CCh--------------HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHH
Q 008262 353 ----------RDD--------------GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEH 389 (572)
Q Consensus 353 ----------~d~--------------~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~ 389 (572)
.++ ..++.++.+.|+|||.+++.. +....+++.+.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~--g~~q~~~v~~~ 249 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI--GLTQGEAVKAL 249 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE--CCCcHHHHHHH
Confidence 011 267888999999999999985 55555544443
No 129
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.44 E-value=7.3e-07 Score=88.49 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=67.3
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccc
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFAT 329 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~ 329 (572)
.....++.+.+. ..++.+|||||||+|++++.|+.. .|+++|..+.....++..++. .+.. ..+...|.
T Consensus 58 P~~~a~~l~~L~----l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~-~~~~nv~~~~gdg 132 (209)
T PF01135_consen 58 PSMVARMLEALD----LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR-LGIDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHTT----C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH-HTTHSEEEEES-G
T ss_pred HHHHHHHHHHHh----cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH-hccCceeEEEcch
Confidence 344455556665 357789999999999998877753 589999999766555544443 3443 33444443
Q ss_pred c-CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 330 R-RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e-~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. .++ ....||.|++..... +.+ ..+.+.||+||++++--
T Consensus 133 ~~g~~-~~apfD~I~v~~a~~----~ip---~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 133 SEGWP-EEAPFDRIIVTAAVP----EIP---EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGTTG-GG-SEEEEEESSBBS----S-----HHHHHTEEEEEEEEEEE
T ss_pred hhccc-cCCCcCEEEEeeccc----hHH---HHHHHhcCCCcEEEEEE
Confidence 2 232 346899999875532 212 34566799999999874
No 130
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.44 E-value=6e-07 Score=88.09 Aligned_cols=100 Identities=26% Similarity=0.398 Sum_probs=69.3
Q ss_pred CEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcE-EEeccccC-CC--CCCCCeeEEEeccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRR-LP--YPSQAFDLIHCSRC 347 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~d~e~-LP--fp~~sFDlI~ss~~ 347 (572)
..+||||||.|.+...++.. .++|+|+...-+..+. +.+...++.+. +...|+.. +. ++++++|.|+....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~-~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL-RKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH-HHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH-HHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 48999999999998888765 7999999987776554 44445566664 33344444 33 56799999997654
Q ss_pred cccccCCh--------HHHHHHHHHhccCCeEEEEEEC
Q 008262 348 RINWTRDD--------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 348 l~hw~~d~--------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..|...- ..+|.++.++|+|||.+.+.|-
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 5553321 3899999999999999999983
No 131
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.44 E-value=1.2e-06 Score=97.63 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=66.3
Q ss_pred CCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
..+|||+|||+|.++..++.. +|+++|+|+.++..+..+. ...++. ..+...|... .++.++||+|+|+...
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~-~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNA-IKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHH-HHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 468999999999998877643 7999999998886665443 333432 2233333211 2345689999996532
Q ss_pred cccc---------------------CCh----HHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWT---------------------RDD----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~---------------------~d~----~~~L~ei~RvLKPGG~lv~st 376 (572)
+... .+. ..++.++.++|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2110 111 246778899999999999874
No 132
>PHA03411 putative methyltransferase; Provisional
Probab=98.43 E-value=7.4e-07 Score=91.49 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=66.1
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
...+|||+|||+|.++..++.+ +|+++|+++.++..+ +++.....+...|...+. .+++||+|+++..+.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~A-----r~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIG-----KRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHH-----HHhCcCCEEEECchhhhc-ccCCCcEEEEcCCcc
Confidence 3468999999999998777543 799999999877443 333223334445555554 346899999988776
Q ss_pred cccCC-------------------hHHHHHHHHHhccCCeEEEEE
Q 008262 350 NWTRD-------------------DGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 350 hw~~d-------------------~~~~L~ei~RvLKPGG~lv~s 375 (572)
+.... ....+....++|+|+|.+.+.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 64221 135667778889999977665
No 133
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.42 E-value=2.2e-06 Score=94.12 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=70.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC--CCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP--YPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP--fp~~sFDlI~s 344 (572)
.++.+|||+|||+|..+..+++. .|+++|+++.++..++. .+...+... .+...|...++ ++ ++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~-n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE-NAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 35678999999999988777653 79999999988765543 344455543 34444555442 33 78999997
Q ss_pred ccccc-----------cccCCh----------HHHHHHHHHhccCCeEEEEEEC
Q 008262 345 SRCRI-----------NWTRDD----------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 345 s~~l~-----------hw~~d~----------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..-.. .|.... ..+|.++.++|||||.++.++.
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 53111 011111 2579999999999999999873
No 134
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.39 E-value=8.9e-06 Score=78.80 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=71.0
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEe-cc-ccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAA-FA-TRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~-~d-~e~LPfp~~sFDlI~ss~ 346 (572)
.+..+++|||||||+.+..++.. +|+++|-++..+.... +.+...+.++.... .+ -+.|+-.+ +||.|+...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGG 110 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGG 110 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECC
Confidence 56789999999999999888722 8999998887664433 33444456654333 22 24444222 799999776
Q ss_pred ccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. ...+.+|+.+...|||||.+++..
T Consensus 111 g-----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 111 G-----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred C-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 5 455899999999999999999985
No 135
>PLN02366 spermidine synthase
Probab=98.38 E-value=4.3e-06 Score=87.71 Aligned_cols=103 Identities=16% Similarity=0.095 Sum_probs=67.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc----CCCcEEEeccccC-CC-CCCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFATRR-LP-YPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r----g~~~~~~~~d~e~-LP-fp~~sFDlI 342 (572)
.++++||+||||.|.+++.+++. +|+.+|+++.++..+...+.... .....+...|... +. .+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 45789999999999999988875 68889999876654443332211 1122333334321 11 235789999
Q ss_pred EeccccccccCC----hHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d----~~~~L~ei~RvLKPGG~lv~st 376 (572)
++... .++... ...+++.+.++|+|||.++...
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 98633 333222 1368999999999999998764
No 136
>PRK01581 speE spermidine synthase; Validated
Probab=98.35 E-value=3.8e-06 Score=89.40 Aligned_cols=130 Identities=15% Similarity=0.128 Sum_probs=77.1
Q ss_pred ccCCCccccccHH-HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHH--HH-
Q 008262 244 FPGGGTQFIHGAD-QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQ--FA- 315 (572)
Q Consensus 244 Fpggg~~f~~g~~-~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~--~A- 315 (572)
|-.|..++...-+ .|.+.|....- . ....+++||+||||+|..++.+++. +|+++|+++.++..+..- +.
T Consensus 121 ~LDG~~Q~se~DE~iYHE~Lvhp~m-~-~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~ 198 (374)
T PRK01581 121 YLDKQLQFSSVDEQIYHEALVHPIM-S-KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVS 198 (374)
T ss_pred EECCeeccccccHHHHHHHHHHHHH-H-hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccch
Confidence 3344445544333 34444443211 1 1245689999999999988888764 799999999877544420 00
Q ss_pred HHc----CCCcEEEeccccC-CCCCCCCeeEEEeccccccccC---C--hHHHHHHHHHhccCCeEEEEEE
Q 008262 316 LER----GAPAMVAAFATRR-LPYPSQAFDLIHCSRCRINWTR---D--DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 316 ~~r----g~~~~~~~~d~e~-LPfp~~sFDlI~ss~~l~hw~~---d--~~~~L~ei~RvLKPGG~lv~st 376 (572)
..+ .....+...|... +.-..+.||+|++... ..... . ...++..+++.|+|||.|+...
T Consensus 199 ~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 199 LNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred hccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 001 1122233333322 3444578999998732 22111 1 1468999999999999998874
No 137
>PRK03612 spermidine synthase; Provisional
Probab=98.34 E-value=3.8e-06 Score=94.11 Aligned_cols=103 Identities=15% Similarity=0.037 Sum_probs=68.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHH--HHHHc-----CCCcEEEeccccC-CCCCCCCee
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQ--FALER-----GAPAMVAAFATRR-LPYPSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~--~A~~r-----g~~~~~~~~d~e~-LPfp~~sFD 340 (572)
.++++|||||||+|..+..+++. +|+++|+++.+++.++.. +.... .....+...|... +...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45689999999999999888754 799999999887554431 11100 1122233334333 333357899
Q ss_pred EEEeccccccccCCh-----HHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDD-----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~-----~~~L~ei~RvLKPGG~lv~st 376 (572)
+|++... ..+.... ..+++++.++|||||.+++..
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9998743 3332221 368899999999999999875
No 138
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.34 E-value=2.4e-06 Score=93.89 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=75.4
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEecccc--
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATR-- 330 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e-- 330 (572)
....+.+.+.+. ..+..+|||+|||+|.++..|+.. .|+|+|+++.++..+..+ +...+.. ..+...|..
T Consensus 283 e~l~~~vl~~l~----~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n-~~~~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 283 QKMVARALEWLD----PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERAREN-ARRNGLDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHhc----CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHH-HHHcCCCceEEEEeChHHh
Confidence 345555555543 245579999999999999998876 799999999998766543 3344443 334444443
Q ss_pred --CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 331 --RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 331 --~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+++.+++||+|++...... ....+..+.+ ++|++.++++..
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr~g----~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPRAG----AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred hhhhhhhcCCCCEEEECcCCcC----hHHHHHHHHh-cCCCeEEEEEeC
Confidence 23455678999998654222 2345555555 799999999974
No 139
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.32 E-value=1.4e-06 Score=87.52 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=68.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
...++|||||+|.|.++..++++ +++.+|+-. .+ +.+.+ .....+...|.. -++|. +|+|+.+.++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v~-----~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPE-VI-----EQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVL 168 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HH-HH-----CCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeeccHh-hh-----hcccc-ccccccccccHH-hhhcc--ccceeeehhh
Confidence 45679999999999999998876 678888732 22 33333 223345555554 55664 9999999999
Q ss_pred ccccCCh-HHHHHHHHHhccCC--eEEEEEEC
Q 008262 349 INWTRDD-GILLLEVNRMLRAG--GYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~-~~~L~ei~RvLKPG--G~lv~st~ 377 (572)
++|.++. ..+|+++++.|+|| |.+++.+.
T Consensus 169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 9996544 48999999999999 99999864
No 140
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.32 E-value=4e-06 Score=83.76 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC-------C---------cEEEeccccCCCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-------P---------AMVAAFATRRLPY 334 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~-------~---------~~~~~~d~e~LPf 334 (572)
....+||+.|||.|.-...|+++ +|+|+|+|+..+..+. .+++. . ..+...|.-.++-
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~----~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAF----EENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHH----HHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHH----HHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 45578999999999999999988 8999999987654332 22221 1 1233445555543
Q ss_pred CC-CCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 335 PS-QAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 335 p~-~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
.. +.||+|+-..+++.+.++. ..+.+.+.++|+|||.+++.
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 22 4799999887777776555 58999999999999995444
No 141
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.31 E-value=3.2e-06 Score=83.26 Aligned_cols=117 Identities=17% Similarity=0.300 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc----EEE
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA----MVA 325 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~----~~~ 325 (572)
..+.+++.|.+.++. ...+|||||||||.-+.+++.+ .-.-.|..+..+ ........+.+.++ ...
T Consensus 10 Nk~pIl~vL~~~l~~-----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P~~l 83 (204)
T PF06080_consen 10 NKDPILEVLKQYLPD-----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPPLAL 83 (204)
T ss_pred CHhHHHHHHHHHhCc-----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCCeEe
Confidence 344566666666652 2236999999999888777766 233334444321 11223334444332 222
Q ss_pred eccccCCCC------CCCCeeEEEeccccccccCCh--HHHHHHHHHhccCCeEEEEEEC
Q 008262 326 AFATRRLPY------PSQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 326 ~~d~e~LPf------p~~sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.......+. ..++||+|+|.++ +|+.+-. ..+|+.+.++|++||.|++..+
T Consensus 84 Dv~~~~w~~~~~~~~~~~~~D~i~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 84 DVSAPPWPWELPAPLSPESFDAIFCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred ecCCCCCccccccccCCCCcceeeehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 222222333 3569999999987 6664443 5899999999999999999964
No 142
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=4.2e-06 Score=82.53 Aligned_cols=105 Identities=13% Similarity=0.139 Sum_probs=68.9
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEecc-ccCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFA-TRRLPY 334 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d-~e~LPf 334 (572)
.-.+.+.|. ..+..+|||||||+|+.++.|++. +|+++|..+.....+..+ -...|..+ .+...| ..-+|
T Consensus 61 vA~m~~~L~----~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~-L~~lg~~nV~v~~gDG~~G~~- 134 (209)
T COG2518 61 VARMLQLLE----LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRN-LETLGYENVTVRHGDGSKGWP- 134 (209)
T ss_pred HHHHHHHhC----CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHH-HHHcCCCceEEEECCcccCCC-
Confidence 344555554 356799999999999999988876 899999888655444333 33445543 233333 23333
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+...||.|+...+.-.. +. .+.+.||+||.+++-.
T Consensus 135 ~~aPyD~I~Vtaaa~~v----P~---~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 135 EEAPYDRIIVTAAAPEV----PE---ALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCCcCEEEEeeccCCC----CH---HHHHhcccCCEEEEEE
Confidence 23789999987653333 22 2456899999999864
No 143
>PHA03412 putative methyltransferase; Provisional
Probab=98.28 E-value=2.7e-06 Score=85.66 Aligned_cols=92 Identities=11% Similarity=0.145 Sum_probs=62.0
Q ss_pred CCEEEEECCCCchhHHHhcc-------CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccc
Q 008262 275 IRVVMDAGCGVASFGAYLLP-------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~-------~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
..+|||+|||+|.++..++. .+|+++|+++.++..++ +......+...|....++ +++||+|+|+.-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar-----~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK-----RIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH-----hhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 46899999999999886653 27999999988764443 222223344455555444 568999999876
Q ss_pred ccccc-CC----------hHHHHHHHHHhccCCeEE
Q 008262 348 RINWT-RD----------DGILLLEVNRMLRAGGYF 372 (572)
Q Consensus 348 l~hw~-~d----------~~~~L~ei~RvLKPGG~l 372 (572)
..... .+ ...++..+.|++++|+.+
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I 159 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI 159 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence 54221 11 135788888878888763
No 144
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.27 E-value=5.1e-06 Score=81.90 Aligned_cols=120 Identities=10% Similarity=0.008 Sum_probs=73.3
Q ss_pred cccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC-cEEEec
Q 008262 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP-AMVAAF 327 (572)
Q Consensus 252 ~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~ 327 (572)
+...+...+.+.+.+... ....+|||+|||+|.++..++.+ +|+++|.++..+..+.. .++..+.. ..+...
T Consensus 34 Rp~~d~v~e~l~~~l~~~---~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~-Nl~~~~~~~v~~~~~ 109 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV---IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIK-NLATLKAGNARVVNT 109 (199)
T ss_pred CcCCHHHHHHHHHHHhhh---cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEEc
Confidence 445666666666665421 23578999999999999754332 89999999876654443 33333433 233333
Q ss_pred cccC-CCCCCCCeeEEEeccccccccCChHHHHHHHHH--hccCCeEEEEEEC
Q 008262 328 ATRR-LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNR--MLRAGGYFAWAAQ 377 (572)
Q Consensus 328 d~e~-LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~R--vLKPGG~lv~st~ 377 (572)
|... ++...++||+|++..-... .-...++..+.. .|+|+|.+++...
T Consensus 110 D~~~~l~~~~~~fDlV~~DPPy~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 110 NALSFLAQPGTPHNVVFVDPPFRK--GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred hHHHHHhhcCCCceEEEECCCCCC--ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 4332 3323457999998865211 112344554444 3799999999853
No 145
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.26 E-value=4.2e-06 Score=87.91 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=68.0
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCC-CCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY-PSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPf-p~~sFDlI~ss~~l~ 349 (572)
+..+|||+|||+|.++..++.. +|+|+|+++.++..+. +.+...++. ..+...|.+.+.. ..+.||+|++..-.-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 3578999999999999999876 7999999999886655 344445553 3444555555432 345799999874411
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.....+.++...++|++.+++++.
T Consensus 252 ----G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 252 ----GIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred ----CccHHHHHHHHHcCCCeEEEEECC
Confidence 112334444555789999999874
No 146
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.26 E-value=1.2e-05 Score=87.12 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCC-C---CCCCCeeEEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRL-P---YPSQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~e~L-P---fp~~sFDlI~ 343 (572)
++.+|||+|||+|.++...+.. +|+++|+++.++..+..+.+ ..++. ..+...|+... . -..++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~-~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVE-LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 3578999999999988664432 79999999998866654433 34442 23444444332 1 1246899999
Q ss_pred ecccccccc--------CChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 344 CSRCRINWT--------RDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 344 ss~~l~hw~--------~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
+..-...-. .+...++..+.++|+|||.|+..+....-+.+++.+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~ 351 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQK 351 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHH
Confidence 985432211 112345567889999999999865333344444444
No 147
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.26 E-value=3.1e-06 Score=84.97 Aligned_cols=99 Identities=20% Similarity=0.291 Sum_probs=75.6
Q ss_pred CEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccccC-CC--CCCCCeeEEEeccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRR-LP--YPSQAFDLIHCSRC 347 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~e~-LP--fp~~sFDlI~ss~~ 347 (572)
..+||||||.|.+...++.+ .++||++...-+.++ .+.+.+.++ ...+...|+.. |. +++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~-l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKA-LKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHH-HHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 57999999999999999877 799999988766444 466777788 54454445433 33 35569999997765
Q ss_pred cccccCCh--------HHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWTRDD--------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~d~--------~~~L~ei~RvLKPGG~lv~st 376 (572)
..|...- ..+++.+.++|+|||.|.+.|
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 6665432 389999999999999999997
No 148
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.26 E-value=1.7e-06 Score=85.74 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=67.0
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
...++||.|+|.|..+..|+-. .|-.+|..+..+..+.............+.....+.+..+.+.||+|.+--|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 5678999999999999877655 6777777776665444322222222223333456766555679999999999999
Q ss_pred ccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 351 WTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 351 w~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
+.++. -.+|+.+...|+|+|.+++-.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 96443 599999999999999999985
No 149
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.22 E-value=7.1e-06 Score=82.75 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=65.3
Q ss_pred CCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCCc--EEEeccccC-CC-----CCCCCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR-LP-----YPSQAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d~e~-LP-----fp~~sFD 340 (572)
+.++|||||||+|..+..|+. .+|+++|+++..+..++..+ .+.++.. .+...++.. ++ .+.++||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~-~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFI-KKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 468999999999975554433 27999999998775555443 3344432 233333322 22 1246899
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|++..- ......++.++.+.|||||.+++..
T Consensus 147 ~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9997532 1333688999999999999998764
No 150
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.20 E-value=1e-06 Score=86.59 Aligned_cols=103 Identities=23% Similarity=0.401 Sum_probs=61.3
Q ss_pred CCCEEEEECCCCc----hhHHHhcc------C---CeEEEeCCccchHHHHHHH------------HHHc------C-C-
Q 008262 274 HIRVVMDAGCGVA----SFGAYLLP------R---NVITMSIAPKDVHENQIQF------------ALER------G-A- 320 (572)
Q Consensus 274 ~~~~VLDIGCGtG----~~a~~L~~------~---~V~gvDiSp~dl~~a~~~~------------A~~r------g-~- 320 (572)
..-+|+..||++| +++..|.+ . +|+|+|+++..+..|.... ..++ + .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5578999999999 55555555 1 7999999998876654210 0011 0 0
Q ss_pred --------CcEEEeccccCCCCCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 321 --------PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 321 --------~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
...+...+.-..+.+.+.||+|+|.++++.+..+. ..++..+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 11222333333233457899999999999885544 589999999999999999973
No 151
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.19 E-value=6.7e-06 Score=95.28 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=70.9
Q ss_pred CCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-CCCCCCCeeEEEeccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LPYPSQAFDLIHCSRC 347 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~e~-LPfp~~sFDlI~ss~~ 347 (572)
+++|||+|||+|.++..++.. +|+++|+|+.++..++.+... .++. ..+...|..+ +.-..++||+|++..-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~-ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL-NGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-hCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 578999999999999988865 699999999988766654443 3443 2344444322 2111468999998653
Q ss_pred cccc----------cCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 348 RINW----------TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 348 l~hw----------~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
...- ..+...++..+.++|+|||.+++++.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2211 12234678889999999999999863
No 152
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.19 E-value=1.5e-05 Score=68.87 Aligned_cols=97 Identities=24% Similarity=0.343 Sum_probs=67.0
Q ss_pred EEEECCCCchh--HHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC--CCCCC-CCeeEEEeccccc
Q 008262 278 VMDAGCGVASF--GAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR--LPYPS-QAFDLIHCSRCRI 349 (572)
Q Consensus 278 VLDIGCGtG~~--a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~--LPfp~-~sFDlI~ss~~l~ 349 (572)
+||+|||+|.. ...+... .++++|+++.++......... .... ..+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 4444442 688899998877552222211 2221 1233334443 78876 489999 666666
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++.. ....+.++.++|+|+|.+++...
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 6645 78999999999999999999864
No 153
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.14 E-value=3.1e-06 Score=87.82 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=68.3
Q ss_pred CCEEEEECCCCc----hhHHHhccC--------CeEEEeCCccchHHHHHHH----H--------HHcCC----------
Q 008262 275 IRVVMDAGCGVA----SFGAYLLPR--------NVITMSIAPKDVHENQIQF----A--------LERGA---------- 320 (572)
Q Consensus 275 ~~~VLDIGCGtG----~~a~~L~~~--------~V~gvDiSp~dl~~a~~~~----A--------~~rg~---------- 320 (572)
.-+|+..||.|| +++..|.+. +|+|+|++...+..++... . .++..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 368999999999 455544431 6999999998887665321 0 00000
Q ss_pred ---------CcEEEeccccCCCCC-CCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 321 ---------PAMVAAFATRRLPYP-SQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 321 ---------~~~~~~~d~e~LPfp-~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
...+...+....+++ .+.||+|+|.++++|+..+. ..++..+++.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 011222233332333 57899999999988885443 58999999999999999887
No 154
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=5.2e-05 Score=76.68 Aligned_cols=97 Identities=20% Similarity=0.159 Sum_probs=72.4
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss 345 (572)
.++.+|||.|.|+|.++.+|+.. +|++.|+-+.....|..++... ++. ..+...|....-+++ .||.|+.-
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-~l~d~v~~~~~Dv~~~~~~~-~vDav~LD 170 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-GLGDRVTLKLGDVREGIDEE-DVDAVFLD 170 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-ccccceEEEecccccccccc-ccCEEEEc
Confidence 57899999999999999999842 8999999887665555444432 332 233334554444443 89999954
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+ +++-.++..+.++|||||.+++-.+
T Consensus 171 -m-----p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 171 -L-----PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred -C-----CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 3 7888999999999999999998863
No 155
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.14 E-value=1.3e-05 Score=80.66 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=57.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC-----CCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR-----LPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~-----LPfp~~sFDlI~ 343 (572)
.+..+|||+|||||.|+..+++. .|+++|+++.|+.....+. ... .+...+++. ++..-..+|+++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~-----~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD-----ERVKVLERTNIRYVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC-----CCeeEeecCCcccCCHhHcCCCceeeeEEE
Confidence 35679999999999999999876 7999999998775422211 111 111112222 221223677777
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++.+ ..|..+.++|+| |.+++-.
T Consensus 149 iS~~---------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 149 ISLI---------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred eehH---------hHHHHHHHHhCc-CeEEEEc
Confidence 6533 258889999999 8776653
No 156
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.06 E-value=7.1e-06 Score=82.05 Aligned_cols=101 Identities=18% Similarity=0.380 Sum_probs=66.1
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHH----HcCCC------------------------
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL----ERGAP------------------------ 321 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~----~rg~~------------------------ 321 (572)
....+|||||-.|.++..+++. .|+|+||.+..++.|..+... +....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4567999999999998888765 799999999877555432110 00000
Q ss_pred -------------cEEEeccccCCCCCCCCeeEEEecccc----ccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 322 -------------AMVAAFATRRLPYPSQAFDLIHCSRCR----INWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 322 -------------~~~~~~d~e~LPfp~~sFDlI~ss~~l----~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
+.+.. ..+-|.+....||+|.|-... +.|.++. ..+|..+.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle-~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLE-SDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEe-cchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00000 011122345679999986432 3453443 48999999999999999987
No 157
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.03 E-value=1.9e-05 Score=86.37 Aligned_cols=99 Identities=21% Similarity=0.252 Sum_probs=67.6
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC----CCCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR----LPYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~----LPfp~~sFDlI~ss 345 (572)
.+..+|||+|||+|.++..|+.. .|+++|+++.++..++.+ +...+..+ .+...|.+. +++.+++||+|+..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n-~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQN-AELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHH-HHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 34578999999999999999875 799999999988666543 33344433 344445433 23445689999976
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
...... ...++..+. .|+|++.++++.
T Consensus 370 PPr~G~---~~~~l~~l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 370 PPRKGC---AAEVLRTII-ELKPERIVYVSC 396 (431)
T ss_pred cCCCCC---CHHHHHHHH-hcCCCEEEEEcC
Confidence 442111 245666555 489999988885
No 158
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.02 E-value=5.5e-05 Score=79.75 Aligned_cols=99 Identities=14% Similarity=0.192 Sum_probs=62.6
Q ss_pred ccHHHHHHHHHHhcccc----ccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcE-
Q 008262 253 HGADQYLDQIAKMVPDI----TWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM- 323 (572)
Q Consensus 253 ~g~~~~i~~L~~~L~~i----~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~- 323 (572)
.+...|+..+.++|... ...+...++||||||+|.+...|+.+ +++|+|+++..+..++...+...++...
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 35678888888776421 11235678999999999766665543 7999999998887776555543133321
Q ss_pred -E-EeccccCC----CCCCCCeeEEEeccccccc
Q 008262 324 -V-AAFATRRL----PYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 324 -~-~~~d~e~L----Pfp~~sFDlI~ss~~l~hw 351 (572)
+ ...+...+ ..+.+.||+|+|+.-++.-
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPPFHAS 202 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCCCcCc
Confidence 1 11121121 1246789999999765443
No 159
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.98 E-value=1.9e-05 Score=88.21 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=76.1
Q ss_pred CCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEE-eccccCCC--CCCCCeeEEEe
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP--YPSQAFDLIHC 344 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~-~~d~e~LP--fp~~sFDlI~s 344 (572)
+.....+||||||.|.+...++.. .++|+|+...-+..+. ..+.+.++.+... ..+.+.+. ++++++|.|+.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 345678999999999999888876 7999999987654444 3445566665433 23333222 67899999998
Q ss_pred ccccccccCCh--------HHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDD--------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~--------~~~L~ei~RvLKPGG~lv~st 376 (572)
++. ..|.... ..+|..+.++|||||.+.+.|
T Consensus 424 ~FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 424 LFP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ECC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 765 6664422 389999999999999999997
No 160
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.95 E-value=5.7e-06 Score=84.57 Aligned_cols=97 Identities=21% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCCEEEEECCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccccC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~ 353 (572)
....+||+|||.|-.+..=-...++|+|++...+ ..++..+.. ..+..|+-.+|+.+.+||.+++..+++|+..
T Consensus 45 ~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~-----~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLL-----GGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred CcceeeecccCCcccCcCCCcceeeecchhhhhc-----cccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 3578999999999554322222578888887644 334433432 3555678999999999999999988888865
Q ss_pred Ch--HHHHHHHHHhccCCeEEEEEE
Q 008262 354 DD--GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 354 d~--~~~L~ei~RvLKPGG~lv~st 376 (572)
.. ..+++|+.|+|||||..++..
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEE
Confidence 54 489999999999999987764
No 161
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.93 E-value=4.3e-05 Score=76.25 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcE--EEe-cc-ccCCC-CCCCCeeEEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAM--VAA-FA-TRRLP-YPSQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~--~~~-~d-~e~LP-fp~~sFDlI~ 343 (572)
..++|||||.+.|+.+..|+.. +++++|+++.+...++..+++ .|+... ... .| .+.+. ...++||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~-ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE-AGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-cCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 4689999999999888887764 699999999887666654443 444331 222 12 22222 4568999999
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.- +.-.+.+.+|..+.++|||||.+++..
T Consensus 138 ID----adK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 138 ID----ADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred Ee----CChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 53 444555899999999999999999875
No 162
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.91 E-value=3.1e-05 Score=79.10 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP 333 (572)
...++.+.+.+. ..+..+|||||||+|.++..|+++ +|+++|+++.++......... .....+...|...++
T Consensus 15 ~~~~~~iv~~~~----~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~ 88 (258)
T PRK14896 15 DRVVDRIVEYAE----DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVD 88 (258)
T ss_pred HHHHHHHHHhcC----CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCC
Confidence 345666666654 235688999999999999999886 799999999887555433221 112334455677776
Q ss_pred CCCCCeeEEEeccccccc
Q 008262 334 YPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw 351 (572)
++ .||.|+++.. .++
T Consensus 89 ~~--~~d~Vv~NlP-y~i 103 (258)
T PRK14896 89 LP--EFNKVVSNLP-YQI 103 (258)
T ss_pred ch--hceEEEEcCC-ccc
Confidence 65 4899998855 444
No 163
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.91 E-value=0.00023 Score=69.41 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=76.7
Q ss_pred HHHHHHHHHhccccccCCC-CCEEEEECCCCch----hHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccc
Q 008262 256 DQYLDQIAKMVPDITWGHH-IRVVMDAGCGVAS----FGAYLLPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAFAT 329 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~-~~~VLDIGCGtG~----~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~ 329 (572)
+.+..++.+.+.-...-.. ..+++|||+|.|. ++..+.+.+++-+|-...-. ......+.+.++.+ .+....+
T Consensus 29 ~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L~nv~v~~~R~ 107 (184)
T PF02527_consen 29 EIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGLSNVEVINGRA 107 (184)
T ss_dssp HHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT-SSEEEEES-H
T ss_pred HHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCCCCEEEEEeee
Confidence 3444455554432221122 2289999999994 44444455899998876533 12224455667764 3444445
Q ss_pred cCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHH
Q 008262 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEH 389 (572)
Q Consensus 330 e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~ 389 (572)
+. +....+||+|++..+ .....++.-+.+.|++||.+++.- +....+|+.++
T Consensus 108 E~-~~~~~~fd~v~aRAv-----~~l~~l~~~~~~~l~~~G~~l~~K--G~~~~~El~~~ 159 (184)
T PF02527_consen 108 EE-PEYRESFDVVTARAV-----APLDKLLELARPLLKPGGRLLAYK--GPDAEEELEEA 159 (184)
T ss_dssp HH-TTTTT-EEEEEEESS-----SSHHHHHHHHGGGEEEEEEEEEEE--SS--HHHHHTH
T ss_pred cc-cccCCCccEEEeehh-----cCHHHHHHHHHHhcCCCCEEEEEc--CCChHHHHHHH
Confidence 55 445689999998866 566889999999999999998875 55666665554
No 164
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.91 E-value=2.4e-05 Score=80.50 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=57.4
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
..++.+.+.+. ..+..+|||||||+|.++..|+++ +|+++|+++.++..+...... ....+...|...+++
T Consensus 29 ~i~~~i~~~l~----~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 29 NILDKIVDAAG----PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHHhcC----CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCH
Confidence 34556666554 245678999999999999999886 899999999888655432211 233455567777776
Q ss_pred CCCCeeEEEecc
Q 008262 335 PSQAFDLIHCSR 346 (572)
Q Consensus 335 p~~sFDlI~ss~ 346 (572)
++-.+|.|+++.
T Consensus 102 ~~~~~~~vv~Nl 113 (272)
T PRK00274 102 SELQPLKVVANL 113 (272)
T ss_pred HHcCcceEEEeC
Confidence 543368888774
No 165
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.90 E-value=4.6e-05 Score=83.88 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhccccccCC----CCCEEEEECCCCchhHHHhcc--------CCeEEEeCCccchHHHHHHHHHHcCC--
Q 008262 255 ADQYLDQIAKMVPDITWGH----HIRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGA-- 320 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~----~~~~VLDIGCGtG~~a~~L~~--------~~V~gvDiSp~dl~~a~~~~A~~rg~-- 320 (572)
++.|-+.+.+.|.+..... +...|||||||+|.+....++ .+|++|+-++......+ +.....+.
T Consensus 163 Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~ 241 (448)
T PF05185_consen 163 YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGD 241 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCC
Confidence 3445555555554432222 246899999999987643322 28999999886543322 23233443
Q ss_pred CcEEEeccccCCCCCCCCeeEEEeccccccccCC-h-HHHHHHHHHhccCCeEEE
Q 008262 321 PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD-D-GILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 321 ~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d-~-~~~L~ei~RvLKPGG~lv 373 (572)
...+...+++.+..+ ..+|+|+|-.+ ..+..+ . ...|....|.|||||.++
T Consensus 242 ~V~vi~~d~r~v~lp-ekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 242 KVTVIHGDMREVELP-EKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TEEEEES-TTTSCHS-S-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eEEEEeCcccCCCCC-CceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 345566678888766 48999997543 333322 2 578899999999999875
No 166
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.90 E-value=5.7e-05 Score=81.36 Aligned_cols=99 Identities=17% Similarity=0.126 Sum_probs=66.5
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCC-CCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL-PYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~L-Pfp~~sFDlI~ss~~l~ 349 (572)
...+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..+.. ..+...|.+.+ +-..+.||+|++..-.-
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 3478999999999999988866 7999999998886555 334444543 33444454432 21124699999875532
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. ...++..+. .++|++.++++..
T Consensus 312 G~---~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 GI---GKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred CC---cHHHHHHHH-hcCCCeEEEEEeC
Confidence 11 134555554 5899999999974
No 167
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.89 E-value=1.8e-05 Score=83.13 Aligned_cols=100 Identities=14% Similarity=0.233 Sum_probs=67.9
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEE--eccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVA--AFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~--~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
+.++|||+|||||.++..-++. .|+++|.|... +-..+.++..+....+. ....+++.+|-+..|+|+|-.+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 5689999999999888766655 89999998743 34446666666655333 23355555557899999986542
Q ss_pred cccc-C-ChHHHHHHHHHhccCCeEEEEE
Q 008262 349 INWT-R-DDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 349 ~hw~-~-d~~~~L~ei~RvLKPGG~lv~s 375 (572)
.... + -...+|-.=.+-|+|||.++=+
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 2221 1 1245666678999999997533
No 168
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.87 E-value=6.9e-05 Score=77.07 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=67.6
Q ss_pred CCCEEEEECCCCc----hhHHHhccC---------CeEEEeCCccchHHHHHH----HHHHcCCCc--------------
Q 008262 274 HIRVVMDAGCGVA----SFGAYLLPR---------NVITMSIAPKDVHENQIQ----FALERGAPA-------------- 322 (572)
Q Consensus 274 ~~~~VLDIGCGtG----~~a~~L~~~---------~V~gvDiSp~dl~~a~~~----~A~~rg~~~-------------- 322 (572)
..-+|+-.||+|| +++..|.+. +|+|.|++...+..|..- ....++++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4678999999999 444443321 799999999888666531 111122110
Q ss_pred -----------EEEeccccCCCCCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 323 -----------MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 323 -----------~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
.+...+.-.-++..+.||+|+|.++++.+.... ..++...+..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 111111111121446799999999988885554 48999999999999999987
No 169
>PLN02672 methionine S-methyltransferase
Probab=97.87 E-value=8.1e-05 Score=89.05 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=71.0
Q ss_pred CCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc--------------CC--CcEEEeccccCCCC
Q 008262 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER--------------GA--PAMVAAFATRRLPY 334 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r--------------g~--~~~~~~~d~e~LPf 334 (572)
..+|||+|||+|.++..++.. +|+++|+++.++..+..+..... .. ...+...|.... +
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 468999999999998888754 69999999998876665544311 01 123333343221 2
Q ss_pred CC--CCeeEEEecccccccc---------------------------------CCh----HHHHHHHHHhccCCeEEEEE
Q 008262 335 PS--QAFDLIHCSRCRINWT---------------------------------RDD----GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 335 p~--~sFDlI~ss~~l~hw~---------------------------------~d~----~~~L~ei~RvLKPGG~lv~s 375 (572)
.. ..||+|+|+.-.+.-. .|. ..++.++.++|||||++++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 22 3699999986422100 111 36788889999999999988
Q ss_pred ECCCCCCHHHHH
Q 008262 376 AQPVYKHEEAQE 387 (572)
Q Consensus 376 t~P~~~tl~EL~ 387 (572)
. ++..-+.+.
T Consensus 278 i--G~~q~~~v~ 287 (1082)
T PLN02672 278 M--GGRPGQAVC 287 (1082)
T ss_pred E--CccHHHHHH
Confidence 5 444444333
No 170
>PLN02476 O-methyltransferase
Probab=97.85 E-value=6e-05 Score=77.90 Aligned_cols=98 Identities=9% Similarity=0.053 Sum_probs=67.9
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccc-cCCC-C----CCCCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT-RRLP-Y----PSQAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~-e~LP-f----p~~sFD 340 (572)
+.++|||||||+|..+..++.. .|+++|.++.....+...+ ++.|+. ..+...++ +.|+ + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~-~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY-ELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 4689999999999988887753 6999999997665554433 344553 22333332 3232 1 136899
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+.-. .......++..+.++|+|||.+++..
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 999643 22344789999999999999998874
No 171
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.82 E-value=0.00012 Score=74.57 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=55.5
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
..++.+.+.+. ..+..+|||||||+|.++..|+++ .|+++|+++.++..+...... .....+...|...+++
T Consensus 16 ~i~~~i~~~~~----~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 16 SVIQKIVEAAN----VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHHhcC----CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCCh
Confidence 34556666554 245689999999999999999886 799999999877554432211 1223344556777766
Q ss_pred CCCCee---EEEecc
Q 008262 335 PSQAFD---LIHCSR 346 (572)
Q Consensus 335 p~~sFD---lI~ss~ 346 (572)
+ +|| +|+++.
T Consensus 90 ~--~~d~~~~vvsNl 102 (253)
T TIGR00755 90 P--DFPKQLKVVSNL 102 (253)
T ss_pred h--HcCCcceEEEcC
Confidence 4 566 777664
No 172
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.81 E-value=7.3e-05 Score=74.05 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=66.8
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccc-cCCC-----CCCCCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT-RRLP-----YPSQAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~-e~LP-----fp~~sFD 340 (572)
+.++||+|||++|+.+..|++. +|+++|+++.....++ +..+..|.. ..+...++ +-++ ...+.||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4589999999999888888753 7999999997665444 344444443 22333332 2222 1236899
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+.-. ...+...++..+.++|+|||.+++..
T Consensus 124 ~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 124 FVFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 999653 33344688999999999999999884
No 173
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.81 E-value=0.00029 Score=71.85 Aligned_cols=133 Identities=16% Similarity=0.243 Sum_probs=80.0
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEec--
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAF-- 327 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~-- 327 (572)
..++..+.+.+.+....+ .....+||+|||+|..+..|+.. .|+++|.|+..+.-+. +.++..++...+.+.
T Consensus 129 ETEE~V~~Vid~~~~~~~-~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEH-SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHN 206 (328)
T ss_pred cHHHHHHHHHHHHhhhhh-cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEec
Confidence 345666666666653322 23347999999999877766654 8999999987664333 233333332222111
Q ss_pred -----cccCCCCCCCCeeEEEeccccccccCCh--------------------------HHHHHHHHHhccCCeEEEEEE
Q 008262 328 -----ATRRLPYPSQAFDLIHCSRCRINWTRDD--------------------------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 328 -----d~e~LPfp~~sFDlI~ss~~l~hw~~d~--------------------------~~~L~ei~RvLKPGG~lv~st 376 (572)
.....+...+.+|+++|+.-.+.- +|. ..++.-+.|.|+|||.+.+..
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~-dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRK-DDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ccccccccccccccCceeEEecCCCcccc-cchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 123344567899999998743221 110 145666789999999999986
Q ss_pred CCCCCCHHHHHHHH
Q 008262 377 QPVYKHEEAQEEHW 390 (572)
Q Consensus 377 ~P~~~tl~EL~~~w 390 (572)
. .......+...|
T Consensus 286 ~-~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 286 V-ERKEHSYLVRIW 298 (328)
T ss_pred c-ccccCcHHHHHH
Confidence 3 233334445544
No 174
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.81 E-value=7.7e-05 Score=78.70 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=75.6
Q ss_pred CCCCEEEEECCCCchhHHHh--ccCCeEEEeCCccchHHHHHHHHHHcCCCcE-EE-eccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYL--LPRNVITMSIAPKDVHENQIQFALERGAPAM-VA-AFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L--~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~-~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.++..|||==||||.+.... ....++|.|++..|+..+..++..- ++... +. ..|+..+|+++++||.|+|-.-.
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y-~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYY-GIEDYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhh-CcCceeEEEecccccCCCCCCccceEEecCCC
Confidence 46679999999999887554 4458999999999887766555433 23322 23 33889999998899999986421
Q ss_pred c-----ccc--CC-hHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 I-----NWT--RD-DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~-----hw~--~d-~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. .-. ++ ...+|..+.++||+||++++..+
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 110 11 24889999999999999999974
No 175
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.79 E-value=8.2e-05 Score=76.51 Aligned_cols=119 Identities=16% Similarity=0.198 Sum_probs=77.7
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHc----C----------
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER----G---------- 319 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~r----g---------- 319 (572)
..+++.|.+.++.........+||-=|||.|.++..++.+ .+.|.|+|..|+-.. ++.... +
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceec
Confidence 4556666666653222345678999999999999999988 899999999887433 222111 0
Q ss_pred ----------C-----C------------c-EEEeccccCCCCCC---CCeeEEEeccccccccCChHHHHHHHHHhccC
Q 008262 320 ----------A-----P------------A-MVAAFATRRLPYPS---QAFDLIHCSRCRINWTRDDGILLLEVNRMLRA 368 (572)
Q Consensus 320 ----------~-----~------------~-~~~~~d~e~LPfp~---~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKP 368 (572)
+ + . ....+|...+-.++ ++||.|++. .++.-..+.-.+|..|.++|||
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~-FFIDTA~Ni~~Yi~tI~~lLkp 194 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC-FFIDTAENIIEYIETIEHLLKP 194 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE-EEeechHHHHHHHHHHHHHhcc
Confidence 0 0 0 00111111111123 699999977 4466667778999999999999
Q ss_pred CeEEEEEEC
Q 008262 369 GGYFAWAAQ 377 (572)
Q Consensus 369 GG~lv~st~ 377 (572)
||+++=..+
T Consensus 195 gG~WIN~GP 203 (270)
T PF07942_consen 195 GGYWINFGP 203 (270)
T ss_pred CCEEEecCC
Confidence 998766654
No 176
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.79 E-value=0.00019 Score=74.40 Aligned_cols=129 Identities=15% Similarity=0.142 Sum_probs=77.9
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcC---------CCcEE
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG---------APAMV 324 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg---------~~~~~ 324 (572)
.-.+++.+++.+.++ .+++||-||-|.|.+++.+++. +++.+|+.+..+ +.+++.- ....+
T Consensus 61 ~yhEml~h~~~~ah~-~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi-----~~ar~~l~~~~~~~~dpRv~i 134 (282)
T COG0421 61 IYHEMLAHVPLLAHP-NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVI-----ELARKYLPEPSGGADDPRVEI 134 (282)
T ss_pred HHHHHHHhchhhhCC-CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHH-----HHHHHhccCcccccCCCceEE
Confidence 334444455543333 3479999999999999999886 789999988655 4443321 11112
Q ss_pred Eecc-ccCCCCCCCCeeEEEeccccccccCC----hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHH
Q 008262 325 AAFA-TRRLPYPSQAFDLIHCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEM 393 (572)
Q Consensus 325 ~~~d-~e~LPfp~~sFDlI~ss~~l~hw~~d----~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~ 393 (572)
...| .+-+.-..++||+|++... -...+. ...+++.++|+|+++|.++..+...+...+++...+..+
T Consensus 135 ~i~Dg~~~v~~~~~~fDvIi~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~ 207 (282)
T COG0421 135 IIDDGVEFLRDCEEKFDVIIVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNV 207 (282)
T ss_pred EeccHHHHHHhCCCcCCEEEEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHH
Confidence 2222 2223323348999997632 331110 158999999999999999998432222334444444333
No 177
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.73 E-value=0.0001 Score=70.98 Aligned_cols=102 Identities=18% Similarity=0.127 Sum_probs=58.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcC----CCcEEEeccc-cCC--C-CCCCCee
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFAT-RRL--P-YPSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg----~~~~~~~~d~-e~L--P-fp~~sFD 340 (572)
..+.+|||||||+|..+..++.. .|+..|..+ -+ +.....+...+ ....+...+= +.+ . ...+.||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-ELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-HHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-HHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 46689999999999666555443 899999887 33 22222332222 1112222110 111 1 2346899
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+|+++.++. .....+.++.-+.++|+++|.++++..
T Consensus 122 ~IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999998844 435567899999999999999888753
No 178
>PRK04148 hypothetical protein; Provisional
Probab=97.73 E-value=0.00012 Score=67.61 Aligned_cols=102 Identities=20% Similarity=0.140 Sum_probs=64.6
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCch-hHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVAS-FGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~-~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp 335 (572)
.+.|.+.++ ..+..++||||||+|. ++..|.+. +|+++|+++..+ +.+++.+.... ..|...-.+.
T Consensus 5 ~~~l~~~~~----~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV-----~~a~~~~~~~v--~dDlf~p~~~ 73 (134)
T PRK04148 5 AEFIAENYE----KGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAV-----EKAKKLGLNAF--VDDLFNPNLE 73 (134)
T ss_pred HHHHHHhcc----cccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHH-----HHHHHhCCeEE--ECcCCCCCHH
Confidence 344555554 2345789999999995 88888876 899999998643 55666655433 2333332221
Q ss_pred -CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 336 -SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 336 -~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
-+.+|+|.+.+. ..+....+.++.+.+ |.-+++...
T Consensus 74 ~y~~a~liysirp----p~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 74 IYKNAKLIYSIRP----PRDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred HHhcCCEEEEeCC----CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 367999998765 233355666666544 555666643
No 179
>PLN02823 spermine synthase
Probab=97.72 E-value=0.00047 Score=73.30 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=65.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc----CCCcEEEeccc-cCCCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFAT-RRLPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r----g~~~~~~~~d~-e~LPfp~~sFDlI~ 343 (572)
..+++||.||+|.|..++++++. +|+.+|+++..+..+...+.... .....+...|. .-+.-..++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35689999999999999887764 68999999977644433222110 11222333332 22333457899999
Q ss_pred eccccccccCC------hHHHHH-HHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRD------DGILLL-EVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d------~~~~L~-ei~RvLKPGG~lv~st 376 (572)
+. +...+... ...+++ .+.+.|+|||.+++..
T Consensus 182 ~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 76 32322111 136777 8999999999998764
No 180
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.71 E-value=0.00041 Score=70.63 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=68.0
Q ss_pred CCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-c-EEEeccccCCCCC---CCCeeE
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-A-MVAAFATRRLPYP---SQAFDL 341 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~-~~~~~d~e~LPfp---~~sFDl 341 (572)
..++.+|||.|.|+|+++..|+.. .|+..|+.+.....++.++.. .++. + .+...|...-.|. ++.||.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCcccE
Confidence 367899999999999999888853 799999988777666655544 3443 2 3334454333332 368999
Q ss_pred EEeccccccccCChHHHHHHHHHhc-cCCeEEEEEEC
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRML-RAGGYFAWAAQ 377 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvL-KPGG~lv~st~ 377 (572)
|+.- + +++-.++..+.++| |+||.++.-.+
T Consensus 117 vfLD-l-----p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 117 VFLD-L-----PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp EEEE-S-----SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred EEEe-C-----CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 9854 3 67778999999999 99999988764
No 181
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.68 E-value=0.00012 Score=76.43 Aligned_cols=88 Identities=20% Similarity=0.234 Sum_probs=59.0
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHc-CCCcEEEeccccCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLP 333 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~r-g~~~~~~~~d~e~LP 333 (572)
.+++.+.+.+. ..+..+|||||||+|.++..|++. +|+++|+++.++..+...++... .....+...|....+
T Consensus 23 ~i~~~Iv~~~~----~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAA----IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcC----CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 45566666554 245678999999999999999876 79999999988866654443321 112334445555444
Q ss_pred CCCCCeeEEEeccccccc
Q 008262 334 YPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw 351 (572)
+ ..||.|+++.. .++
T Consensus 99 ~--~~~d~VvaNlP-Y~I 113 (294)
T PTZ00338 99 F--PYFDVCVANVP-YQI 113 (294)
T ss_pred c--cccCEEEecCC-ccc
Confidence 4 36899998743 444
No 182
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.63 E-value=0.0012 Score=68.31 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=89.5
Q ss_pred CCCCCEEEEECCCCchhHHHhccC------CeEEEeCCccchHHHHHHHHHHcCCCcE--EEeccc---cCCCCCCCCee
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPAM--VAAFAT---RRLPYPSQAFD 340 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiSp~dl~~a~~~~A~~rg~~~~--~~~~d~---e~LPfp~~sFD 340 (572)
.+..-+||||.||.|......++. +|.-.|+++..+...+ +.++++|+... +...|+ +.+.--+-..+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 356678999999999654443332 6888899998775444 66778887653 443332 22221234568
Q ss_pred EEEeccccccccCCh---HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEEEeecc
Q 008262 341 LIHCSRCRINWTRDD---GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKP 417 (572)
Q Consensus 341 lI~ss~~l~hw~~d~---~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~iw~kp 417 (572)
+++.+....-+ +|- ...|..+.++|.|||+++.+..|-...++-+.... ........|. .-.++
T Consensus 212 l~iVsGL~ElF-~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~L---tsHr~g~~Wv---------MRrRs 278 (311)
T PF12147_consen 212 LAIVSGLYELF-PDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVL---TSHRDGKAWV---------MRRRS 278 (311)
T ss_pred EEEEecchhhC-CcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHH---hcccCCCceE---------EEecC
Confidence 99988775555 553 36799999999999999999754333333222211 0000001121 12333
Q ss_pred chhHHHHHHhcCCCC
Q 008262 418 TNNSCYLNREAGTIP 432 (572)
Q Consensus 418 l~~~c~ll~~aGF~~ 432 (572)
-.++-.+..++||.-
T Consensus 279 q~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 279 QAEMDQLVEAAGFEK 293 (311)
T ss_pred HHHHHHHHHHcCCch
Confidence 345667888999964
No 183
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.62 E-value=0.00079 Score=65.79 Aligned_cols=116 Identities=12% Similarity=-0.045 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~ 329 (572)
.+...+.+...+... -...+|||++||+|.++..++.+ .|+++|.++..+...+.+ +...+.. ..+...|.
T Consensus 33 ~~~vrea~f~~l~~~---~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N-~~~~~~~~~~~~~~~D~ 108 (189)
T TIGR00095 33 TRVVRELFFNILRPE---IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKEN-LALLKSGEQAEVVRNSA 108 (189)
T ss_pred hHHHHHHHHHHHHHh---cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHhCCcccEEEEehhH
Confidence 344445555555422 24578999999999999998876 699999998766544433 3333332 23444444
Q ss_pred -cCCC-C--CCCCeeEEEeccccccccCChHHHHHHHH--HhccCCeEEEEEE
Q 008262 330 -RRLP-Y--PSQAFDLIHCSRCRINWTRDDGILLLEVN--RMLRAGGYFAWAA 376 (572)
Q Consensus 330 -e~LP-f--p~~sFDlI~ss~~l~hw~~d~~~~L~ei~--RvLKPGG~lv~st 376 (572)
+.+. + ....||+|+...-.. . .....++..+. .+|+++|.+++..
T Consensus 109 ~~~l~~~~~~~~~~dvv~~DPPy~-~-~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 109 LRALKFLAKKPTFDNVIYLDPPFF-N-GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHHHHHhhccCCCceEEEECcCCC-C-CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 2222 1 122478888754422 1 22244444443 4789999888874
No 184
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00054 Score=66.65 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=57.5
Q ss_pred CCCEEEEECCCCchhHH--HhccC-CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGA--YLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~--~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.+++|+|+|||||.++. .++.. .|+++|+.+..+..+. +.+.+.+....+...|..+. ...||.++.+.-+-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhc---CCccceEEECCCCcc
Confidence 56789999999997654 44443 8999999998774443 44444444445555555554 467899998877665
Q ss_pred ccCCh-HHHHHHHHHhc
Q 008262 351 WTRDD-GILLLEVNRML 366 (572)
Q Consensus 351 w~~d~-~~~L~ei~RvL 366 (572)
|.... ..+|..+.++-
T Consensus 121 ~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 121 QRRHADRPFLLKALEIS 137 (198)
T ss_pred ccccCCHHHHHHHHHhh
Confidence 54433 24555444443
No 185
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.60 E-value=0.00018 Score=77.73 Aligned_cols=96 Identities=19% Similarity=0.129 Sum_probs=66.5
Q ss_pred CCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCCCCCeeEEEeccccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
..+|||++||+|.++..++.. .|+++|+++..+..++. .++..++... +...|...+-...+.||+|++...
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~-N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKK-NLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 358999999999999888643 69999999987754443 3333444432 444454443211467999997632
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..+..++..+.+.+++||+++++.
T Consensus 135 ---Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 ---GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ---CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 334578888788999999999994
No 186
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.60 E-value=8.8e-05 Score=79.45 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=75.1
Q ss_pred CCCEEEEECCCCchhHHHhcc---CCeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~---~~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
+...++|+|||.|....++.. .+++|+|.++..+......... .++. ..+...+.-..||+++.||.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-AYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-HHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 445799999999977766654 3899999988765444332221 1111 123444677889999999999999887
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.|. ++...++.|++|+++|||+++...
T Consensus 189 ~~~-~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 189 CHA-PDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred ccC-CcHHHHHHHHhcccCCCceEEeHH
Confidence 777 888999999999999999997763
No 187
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.56 E-value=4.7e-05 Score=74.61 Aligned_cols=120 Identities=20% Similarity=0.298 Sum_probs=80.3
Q ss_pred ccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC
Q 008262 244 FPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP 321 (572)
Q Consensus 244 Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~ 321 (572)
|-|.|.||.-..++..+.|.---+ .++..+.++||+|+|.|..+..++.. +|.+.++|..|. ...+.++..
T Consensus 84 ~lgrGsMFifSe~QF~klL~i~~p--~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr-----~rL~kk~yn 156 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRKLLVIGGP--AWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMR-----DRLKKKNYN 156 (288)
T ss_pred ccccCceEEecHHHHHHHHhcCCC--ccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHH-----HHHhhcCCc
Confidence 445556654445554444332223 23566789999999999999999887 788888877665 333344433
Q ss_pred cEEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccC-CeEEEEE
Q 008262 322 AMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRA-GGYFAWA 375 (572)
Q Consensus 322 ~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKP-GG~lv~s 375 (572)
..- . .+.--.+-.||+|.|.++ +.-+.++..+|++++.+|+| .|..+++
T Consensus 157 Vl~-~---~ew~~t~~k~dli~clNl-LDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 157 VLT-E---IEWLQTDVKLDLILCLNL-LDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred eee-e---hhhhhcCceeehHHHHHH-HHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 211 1 111112346999999876 55557889999999999999 8998887
No 188
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.55 E-value=0.00021 Score=73.02 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=62.9
Q ss_pred CCCCEEEEECCCCchhHHHhc-cC--CeEEEeCCccchHHHHH--------------HHH-HHcCC--------------
Q 008262 273 HHIRVVMDAGCGVASFGAYLL-PR--NVITMSIAPKDVHENQI--------------QFA-LERGA-------------- 320 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~-~~--~V~gvDiSp~dl~~a~~--------------~~A-~~rg~-------------- 320 (572)
.++.++||||||.-..-..-+ +. +|+..|.++....+-.. +.. ...|.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 346789999999965432222 22 79999998876643221 111 00010
Q ss_pred CcEEEeccccC-CCCCC-----CCeeEEEeccccccccCChH---HHHHHHHHhccCCeEEEEEE
Q 008262 321 PAMVAAFATRR-LPYPS-----QAFDLIHCSRCRINWTRDDG---ILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 321 ~~~~~~~d~e~-LPfp~-----~sFDlI~ss~~l~hw~~d~~---~~L~ei~RvLKPGG~lv~st 376 (572)
...+...|... -|+.. ..||+|++..|+...+.+.. .+++++.++|||||+|++..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 01122234333 23332 35999999999999888874 88999999999999999986
No 189
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.55 E-value=0.00044 Score=65.91 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~ 329 (572)
....++.++..+. ..++.-|||+|.|||.++..++.+ .+++++.++.-.+ ...++.....+..+|+
T Consensus 33 Ss~lA~~M~s~I~----pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~-----~L~~~~p~~~ii~gda 103 (194)
T COG3963 33 SSILARKMASVID----PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVC-----HLNQLYPGVNIINGDA 103 (194)
T ss_pred cHHHHHHHHhccC----cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHH-----HHHHhCCCccccccch
Confidence 3445566666655 245678999999999999999887 6889988885432 2222322222444444
Q ss_pred cCCC-----CCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 330 RRLP-----YPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e~LP-----fp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
..+. +.+..||.|+|..-+..+.... -.+|+++...|++||-++--+
T Consensus 104 ~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 104 FDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred hhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 4443 5677899999976655553333 388999999999999998765
No 190
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.49 E-value=0.00094 Score=74.04 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=68.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCC-CCCCCeeEEE--
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLP-YPSQAFDLIH-- 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~d~e~LP-fp~~sFDlI~-- 343 (572)
.++.+|||++||.|.=+.++++. .|++.|+++.-+...+ +.+...|+.+. +...|...+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 46789999999999766555443 6999999987664433 33344566553 3334544443 3346799999
Q ss_pred --eccccccccCCh------------------HHHHHHHHHhccCCeEEEEEE
Q 008262 344 --CSRCRINWTRDD------------------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 --ss~~l~hw~~d~------------------~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.. -.+..++ ..+|..+.+.|||||+++.+|
T Consensus 191 aPCSG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 191 APCSGE-GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCCCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 6532 1122222 378889999999999999997
No 191
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.49 E-value=0.00033 Score=71.36 Aligned_cols=98 Identities=11% Similarity=0.062 Sum_probs=65.2
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc--EEEecc-ccCCCC------CCCCe
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA-TRRLPY------PSQAF 339 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d-~e~LPf------p~~sF 339 (572)
+.++||+||+++|.-+..|+.. +|+++|..+.....+...+ .+.|+.. .+...+ .+.|+- ..++|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~-~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI-QKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 4578999999999877777643 7999999986654444333 3344332 222222 233331 13689
Q ss_pred eEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 340 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 340 DlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+|+.- +.......++..+.+.|+|||.+++-.
T Consensus 158 D~iFiD----adK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 158 DFIFVD----ADKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred cEEEec----CCHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 999964 333344688889999999999998863
No 192
>PRK00536 speE spermidine synthase; Provisional
Probab=97.48 E-value=0.0015 Score=67.22 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHH---HHHHHc-CCCcEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQI---QFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~---~~A~~r-g~~~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.++++||=||.|.|..++.+++. +|+-||+.+..+..+.. ..+..- .....+.. ... .-..++||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEEcC
Confidence 56799999999999999999987 79999999876633322 111101 11111111 111 11236899999763
Q ss_pred ccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. ....+++.++|+|+|||.++...
T Consensus 148 ~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 148 E------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred C------CChHHHHHHHHhcCCCcEEEECC
Confidence 2 34788899999999999999975
No 193
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00044 Score=68.15 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=62.3
Q ss_pred CCCCEEEEECCCCchhHHHhc----cC--CeEEEeCCccchHHHHHHHHH-----------HcCCCcEEEeccccCCCCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLL----PR--NVITMSIAPKDVHENQIQFAL-----------ERGAPAMVAAFATRRLPYP 335 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~----~~--~V~gvDiSp~dl~~a~~~~A~-----------~rg~~~~~~~~d~e~LPfp 335 (572)
.++.+.||+|.|+|+++..++ .. .++|+|.-+..+..+....-+ +++ ...+++.|....--+
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~-~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG-ELSIVVGDGRKGYAE 159 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC-ceEEEeCCccccCCc
Confidence 467889999999998876554 22 348998877554333222111 111 223445555555556
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
...||.|||... .....+++...|++||.+++--
T Consensus 160 ~a~YDaIhvGAa-------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGAA-------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEccC-------ccccHHHHHHhhccCCeEEEee
Confidence 788999998633 2456677788999999998863
No 194
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0017 Score=62.74 Aligned_cols=111 Identities=17% Similarity=0.268 Sum_probs=69.4
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
....+||||||+|..+..|+.. -..++|++|..+ ++..+.|+..+........|... ....++.|+++-+.-.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPY 120 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCc
Confidence 3577999999999988888776 367889999755 44445565554432222222111 1223788888766532
Q ss_pred cc--------------cc--CCh----HHHHHHHHHhccCCeEEEEEECCCCCCHHHHH
Q 008262 349 IN--------------WT--RDD----GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 387 (572)
Q Consensus 349 ~h--------------w~--~d~----~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~ 387 (572)
.. |. .+. .+++.++..+|.|.|.|++... ..+..+|+-
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~-~~N~p~ei~ 178 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL-RANKPKEIL 178 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh-hhcCHHHHH
Confidence 21 32 222 2677788899999999999864 334444433
No 195
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.38 E-value=0.00044 Score=72.88 Aligned_cols=97 Identities=20% Similarity=0.269 Sum_probs=69.8
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
.....+|+|.|.|..+..++.. +|-++++....+.+++.+.+ .|+.....+ ..+++|-. |+|++-.+++||
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gd-mfq~~P~~----daI~mkWiLhdw 249 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGD-MFQDTPKG----DAIWMKWILHDW 249 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceeccc-ccccCCCc----CeEEEEeecccC
Confidence 3578999999999999888776 67777776655544433333 333332222 23445533 599999999999
Q ss_pred cCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 352 TRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 352 ~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++. ..+|++|+..|+|||.+++...
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 6544 5999999999999999999864
No 196
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.34 E-value=0.00089 Score=73.30 Aligned_cols=100 Identities=20% Similarity=0.323 Sum_probs=78.3
Q ss_pred EEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccccC
Q 008262 277 VVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (572)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~ 353 (572)
++|-+|||.-.+...+.+. .|+.+|+|+..+.......++++. ...+...|+..+.|++++||+|+--..+.+...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~-~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERP-EMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCc-ceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999998888775 899999999877555544443322 223445578999999999999999888777766
Q ss_pred ChH---------HHHHHHHHhccCCeEEEEEEC
Q 008262 354 DDG---------ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 354 d~~---------~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.. ..+.++.|+|++||.++..+.
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 543 457999999999999887764
No 197
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.34 E-value=0.0015 Score=62.62 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=63.7
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC-
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR- 331 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~- 331 (572)
+.++.+...-+ ..+...+|||+||++|.|+..++++ .|+|+|+.+.... .....+.. .......+.
T Consensus 9 L~ei~~~~~~~-~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~------~~~~~i~~d~~~~~~~~~i 81 (181)
T PF01728_consen 9 LYEIDEKFKIF-KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL------QNVSFIQGDITNPENIKDI 81 (181)
T ss_dssp HHHHHHTTSSS--TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-------TTEEBTTGGGEEEEHSHHG
T ss_pred HHHHHHHCCCC-CcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc------cceeeeecccchhhHHHhh
Confidence 44444444422 1225689999999999999999876 6999999885210 00000000 000000111
Q ss_pred ---CCCCCCCeeEEEecccccccc----CCh-------HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 332 ---LPYPSQAFDLIHCSRCRINWT----RDD-------GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 332 ---LPfp~~sFDlI~ss~~l~hw~----~d~-------~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
++-..+.||+|+|-.+ .... .|. ...+.-+.+.|||||.|++..+-.... .++..
T Consensus 82 ~~~~~~~~~~~dlv~~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~-~~~~~ 150 (181)
T PF01728_consen 82 RKLLPESGEKFDLVLSDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI-EELIY 150 (181)
T ss_dssp GGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS-HHHHH
T ss_pred hhhccccccCcceeccccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH-HHHHH
Confidence 1112268999998752 2221 122 144455567899999999987643333 34443
No 198
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.33 E-value=0.001 Score=65.77 Aligned_cols=122 Identities=18% Similarity=0.147 Sum_probs=71.7
Q ss_pred CCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc--C--CeEEEeCCccchHHHHHHH
Q 008262 239 KDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP--R--NVITMSIAPKDVHENQIQF 314 (572)
Q Consensus 239 g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~--~--~V~gvDiSp~dl~~a~~~~ 314 (572)
|=.|.+.-...+|..+...-..++.+.+. ++.+|||+-||.|.|+..++. + .|+++|++|..+... .+.
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L-~~N 144 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERRRIANLVK------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYL-KEN 144 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHHHHHTC--------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHH-HHH
T ss_pred CEEEEEccceEEEccccHHHHHHHHhcCC------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHH-HHH
Confidence 33444444445555554444456665543 568999999999999988887 3 699999999766433 344
Q ss_pred HHHcCCCc--EEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEE
Q 008262 315 ALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 315 A~~rg~~~--~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv 373 (572)
++..++.. .....|...+.- .+.||-|++... .....+|..+.+++|+||.+-
T Consensus 145 i~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp-----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 145 IRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP-----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-----SSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-----HHHHHHHHHHHHHhcCCcEEE
Confidence 44445543 234456665544 789999997642 233568889999999999874
No 199
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.29 E-value=0.00032 Score=70.07 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=68.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHc----CC---CcEEEeccccCC--CCCCCCee
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER----GA---PAMVAAFATRRL--PYPSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~r----g~---~~~~~~~d~e~L--Pfp~~sFD 340 (572)
+.+.+|||.-.|-|+++...+++ .|+.++.++.-+ +.|.-+ ++ ...+...|+.++ .|.|.+||
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-----eLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-----ELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-----EeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 46789999999999999888776 788888888655 333222 11 112333344332 37899999
Q ss_pred EEEeccccccccCCh--HHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+-..-.+...... ..+..|++|+|||||.++-.+
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 998654333332333 589999999999999987653
No 200
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.28 E-value=0.00084 Score=64.99 Aligned_cols=102 Identities=22% Similarity=0.240 Sum_probs=64.6
Q ss_pred CCCCEEEEECCCCchhHHHhcc--C--C---------eEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP--R--N---------VITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQ 337 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~--~--~---------V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~ 337 (572)
.+...+||-=||+|++..+.+. . . ++|.|+++.++..+..+ +...+.. ..+...|...+++.++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEEEecchhhcccccC
Confidence 4567899999999988754322 2 3 67999999988766544 3444543 2455557888998788
Q ss_pred CeeEEEeccccccccCCh-------HHHHHHHHHhccCCeEEEEE
Q 008262 338 AFDLIHCSRCRINWTRDD-------GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~-------~~~L~ei~RvLKPGG~lv~s 375 (572)
++|.|+++.-.-.-.... ..++.++.|+|++...++++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 999999986432211111 26789999999994444444
No 201
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.27 E-value=0.0017 Score=66.10 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=65.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcC----CCcEEEeccc-cCCCCCCC-CeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFAT-RRLPYPSQ-AFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg----~~~~~~~~d~-e~LPfp~~-sFDlI 342 (572)
.++++||-||-|.|..++.+++. +|+.+|+++..+.-+..-+..... ....+...|. .-+.-..+ .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 46799999999999999999875 699999999766444332222111 1223333332 11222234 89999
Q ss_pred EeccccccccCCh----HHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDD----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~----~~~L~ei~RvLKPGG~lv~st 376 (572)
+.-.. ....... ..+++.+.++|+|||.+++..
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 97543 2221221 489999999999999999875
No 202
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.27 E-value=0.002 Score=66.62 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=64.8
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc---C--CeEEEeCCccchHHHHHHHHHHcC-CCcE--EEecc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP---R--NVITMSIAPKDVHENQIQFALERG-APAM--VAAFA 328 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~---~--~V~gvDiSp~dl~~a~~~~A~~rg-~~~~--~~~~d 328 (572)
..+.++...+++ -.+++|||+|||+|.......+ . +++++|.|+.|+.-+.. ...... .... ....-
T Consensus 20 ~vl~El~~r~p~----f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~-l~~~~~~~~~~~~~~~~~ 94 (274)
T PF09243_consen 20 RVLSELRKRLPD----FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR-LLRAGPNNRNAEWRRVLY 94 (274)
T ss_pred HHHHHHHHhCcC----CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH-HHhcccccccchhhhhhh
Confidence 445566666553 3568999999999965444332 2 79999999988754332 222111 1110 00001
Q ss_pred ccCCCCCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 329 TRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+.+++. ..|+|++++++..+.... ..+++.+-+.+.+ +|++.++
T Consensus 95 ~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 95 RDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred cccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 1223333 239999999988875421 2555555555554 8888864
No 203
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.24 E-value=0.0018 Score=64.43 Aligned_cols=86 Identities=17% Similarity=0.278 Sum_probs=59.7
Q ss_pred CCEEEEECCCCchhHHHhccC-CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC---CCCCeeEEEecccccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY---PSQAFDLIHCSRCRIN 350 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf---p~~sFDlI~ss~~l~h 350 (572)
.-++|||||=+......-... +|+.||+.+.. +. +...|.-..|. +++.||+|.|+.+ +.
T Consensus 52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~--------------~~-I~qqDFm~rplp~~~~e~FdvIs~SLV-LN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQH--------------PG-ILQQDFMERPLPKNESEKFDVISLSLV-LN 115 (219)
T ss_pred cceEEeecccCCCCcccccCceeeEEeecCCCC--------------CC-ceeeccccCCCCCCcccceeEEEEEEE-Ee
Confidence 368999998855433222222 79999998742 11 22223333333 4679999999966 66
Q ss_pred ccCCh---HHHHHHHHHhccCCeE-----EEEEE
Q 008262 351 WTRDD---GILLLEVNRMLRAGGY-----FAWAA 376 (572)
Q Consensus 351 w~~d~---~~~L~ei~RvLKPGG~-----lv~st 376 (572)
+.+++ ..+++.+++.|+|+|. |++..
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 66877 3899999999999999 88875
No 204
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.22 E-value=0.0038 Score=65.98 Aligned_cols=116 Identities=10% Similarity=0.033 Sum_probs=69.3
Q ss_pred CCCEEEEECCCCchhHHHhccC--------CeEEEeCCccchHHHHHHHHHHcCCCcEE--Eeccc----cCCCC--CCC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALERGAPAMV--AAFAT----RRLPY--PSQ 337 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--------~V~gvDiSp~dl~~a~~~~A~~rg~~~~~--~~~d~----e~LPf--p~~ 337 (572)
+...++|+|||.|.=+..|++. .++++|+|...+..+..+..........+ ..++. ..++- ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 3468999999999654444332 58999999988877665555222221211 11121 22321 123
Q ss_pred CeeEEEeccccccccCCh--HHHHHHHHH-hccCCeEEEEEECCCCCCHHHHHHHH
Q 008262 338 AFDLIHCSRCRINWTRDD--GILLLEVNR-MLRAGGYFAWAAQPVYKHEEAQEEHW 390 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~--~~~L~ei~R-vLKPGG~lv~st~P~~~tl~EL~~~w 390 (572)
...+|+.-...+.-.+.. ..+|+++.+ .|+|||.|++..- .......+..+|
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D-~~k~~~~l~~AY 210 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD-GCKDPDKVLRAY 210 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC-CCCCHHHHHHHh
Confidence 467777655444332333 388999999 9999999999842 333344444444
No 205
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0069 Score=59.95 Aligned_cols=113 Identities=15% Similarity=0.118 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~ 329 (572)
+...+.+|.+...- -.++.+|+|||+-.|+|++.++++ .|+++|+-|..... + ..+...|.
T Consensus 29 Aa~KL~el~~k~~i---~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~---------~--V~~iq~d~ 94 (205)
T COG0293 29 AAYKLLELNEKFKL---FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP---------G--VIFLQGDI 94 (205)
T ss_pred HHHHHHHHHHhcCe---ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC---------C--ceEEeeec
Confidence 33445555555432 256789999999999999988776 49999999865421 1 22333332
Q ss_pred cCCC--------CCCCCeeEEEeccc---cccccCChH-------HHHHHHHHhccCCeEEEEEECCCCC
Q 008262 330 RRLP--------YPSQAFDLIHCSRC---RINWTRDDG-------ILLLEVNRMLRAGGYFAWAAQPVYK 381 (572)
Q Consensus 330 e~LP--------fp~~sFDlI~ss~~---l~hw~~d~~-------~~L~ei~RvLKPGG~lv~st~P~~~ 381 (572)
..-+ +....+|+|+|-.. ..++..|.. .++.-+.++|+|||.|++..+-+..
T Consensus 95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 2211 23445799997542 234433432 5566677899999999999763333
No 206
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.15 E-value=0.01 Score=63.03 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=68.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc-ccCCCCCCCCeeEEEeccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFA-TRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d-~e~LPfp~~sFDlI~ss~~l~ 349 (572)
.++.++|||||++|.|+..|+++ .|++||..+.+- ..... ....+...+ ....| +.+.+|+++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~------~L~~~-~~V~h~~~d~fr~~p-~~~~vDwvVcDmv-- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ------SLMDT-GQVEHLRADGFKFRP-PRKNVDWLVCDMV-- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH------hhhCC-CCEEEEeccCcccCC-CCCCCCEEEEecc--
Confidence 46789999999999999999988 799999766321 11111 222233333 23333 2578999998754
Q ss_pred cccCChHHHHHHHHHhccCC--eEEEEEE-CCCCCCHHHHHHHHHHH
Q 008262 350 NWTRDDGILLLEVNRMLRAG--GYFAWAA-QPVYKHEEAQEEHWKEM 393 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPG--G~lv~st-~P~~~tl~EL~~~w~~~ 393 (572)
..+..++.-+.+-|..| ..+++.- +|.....++.++....+
T Consensus 280 ---e~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i 323 (357)
T PRK11760 280 ---EKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELI 323 (357)
T ss_pred ---cCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 56677777788888766 4555552 34445555555544333
No 207
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.12 E-value=0.0018 Score=69.60 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=61.6
Q ss_pred CEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC-CC-CC--------------C
Q 008262 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR-LP-YP--------------S 336 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~-LP-fp--------------~ 336 (572)
.+|||++||+|.++..|+.. .|+++|+++.++..+.. .+...++.. .+...|... ++ +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~-N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY-NIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999988875 79999999998866553 344445533 344444332 11 10 1
Q ss_pred CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECC
Q 008262 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P 378 (572)
..||+|+...-.-.+ ...++..+. +|++.++++..|
T Consensus 287 ~~~D~v~lDPPR~G~---~~~~l~~l~---~~~~ivyvSC~p 322 (362)
T PRK05031 287 YNFSTIFVDPPRAGL---DDETLKLVQ---AYERILYISCNP 322 (362)
T ss_pred CCCCEEEECCCCCCC---cHHHHHHHH---ccCCEEEEEeCH
Confidence 258999976442111 134444444 479999999753
No 208
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.09 E-value=0.0012 Score=70.66 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=60.4
Q ss_pred CEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC-CC-------C---C-----C
Q 008262 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR-LP-------Y---P-----S 336 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~-LP-------f---p-----~ 336 (572)
.+|||+|||+|.++..|++. .|+++|+++.++..+.. .+...++.. .+...|.+. ++ + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~-n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQY-NIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 46999999999999988875 89999999998866653 344455533 344444333 11 1 0 1
Q ss_pred CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..||+|+...-.-.+ ...++..+ ++|++.+++++.
T Consensus 278 ~~~d~v~lDPPR~G~---~~~~l~~l---~~~~~ivYvsC~ 312 (353)
T TIGR02143 278 YNCSTIFVDPPRAGL---DPDTCKLV---QAYERILYISCN 312 (353)
T ss_pred CCCCEEEECCCCCCC---cHHHHHHH---HcCCcEEEEEcC
Confidence 237999865432111 13444444 348999999974
No 209
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.09 E-value=0.0019 Score=67.51 Aligned_cols=100 Identities=12% Similarity=0.152 Sum_probs=62.4
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCCCCCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
-..+.|||+|||+|.++...+.. +|.+++.|. |...++. ......+.. .++.+.+|++.+| +..|+|++-.+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~-Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPM 252 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARK-LVASNNLADRITVIPGKIEDIELP-EKVDVIISEPM 252 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHH-HHhcCCccceEEEccCccccccCc-hhccEEEeccc
Confidence 35688999999999877555443 899998776 4433332 222223222 2333346777666 68999998665
Q ss_pred cccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 348 RINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 348 l~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
..-+.++. -.....++|.|||.|..+=+
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 33332221 23344567999999998644
No 210
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.06 E-value=0.0042 Score=67.26 Aligned_cols=112 Identities=15% Similarity=0.057 Sum_probs=74.4
Q ss_pred CCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccc-cCCC---CCCCCeeEEEe
Q 008262 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFAT-RRLP---YPSQAFDLIHC 344 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~-e~LP---fp~~sFDlI~s 344 (572)
+++|||+=|=||.|+.+.+.. +|++||+|...+.-+..++.. +++. ..+...|+ +-|. -....||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L-Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL-NGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh-cCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 689999999999988776654 899999999877655544433 3432 23444342 2222 12348999997
Q ss_pred cccccc--------ccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHH
Q 008262 345 SRCRIN--------WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 387 (572)
Q Consensus 345 s~~l~h--------w~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~ 387 (572)
-.-... ...+...++..+.++|+|||.+++++-...-..+++.
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~ 347 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFL 347 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHH
Confidence 653322 1233358899999999999999999743344444433
No 211
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.01 E-value=0.0017 Score=67.65 Aligned_cols=117 Identities=19% Similarity=0.242 Sum_probs=67.9
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc-----------CCeEEEeCCccchHHHHHHHHHHcCCCc--
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----------RNVITMSIAPKDVHENQIQFALERGAPA-- 322 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~-----------~~V~gvDiSp~dl~~a~~~~A~~rg~~~-- 322 (572)
....+.+.+++. .....+|||-.||+|.|...+.+ .+++|+|+++....-+...... ++...
T Consensus 32 ~~i~~l~~~~~~----~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~ 106 (311)
T PF02384_consen 32 REIVDLMVKLLN----PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSN 106 (311)
T ss_dssp HHHHHHHHHHHT----T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBG
T ss_pred HHHHHHHHhhhh----ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcccccc
Confidence 344555555554 34567899999999998766543 2799999998776555544433 22211
Q ss_pred -EEEeccccCCC-CC-CCCeeEEEeccccccc--cC-----C------------h-HHHHHHHHHhccCCeEEEEEEC
Q 008262 323 -MVAAFATRRLP-YP-SQAFDLIHCSRCRINW--TR-----D------------D-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 323 -~~~~~d~e~LP-fp-~~sFDlI~ss~~l~hw--~~-----d------------~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+...|.-..+ +. .+.||+|+++.-+... .. + . -.++..+.+.|++||.+.+..+
T Consensus 107 ~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 107 INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 13333322222 22 5789999998754332 10 0 0 1578889999999999877754
No 212
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.97 E-value=0.0042 Score=62.18 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=65.4
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc---EEEeccccCCC-----CCCCCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA---MVAAFATRRLP-----YPSQAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~---~~~~~d~e~LP-----fp~~sFD 340 (572)
.++++||||.=||.-+..++.. .|+++|+........ .++.+..|... .+.....+.|+ .+.++||
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 3588999998888654444432 899999988655333 23334344322 12211223332 3578999
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+++. -||-.+....+.++.++||+||.+++..
T Consensus 152 faFv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 152 FAFV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 9984 6675555789999999999999999874
No 213
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.0045 Score=68.02 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=83.0
Q ss_pred CCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHH
Q 008262 239 KDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL 316 (572)
Q Consensus 239 g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~ 316 (572)
+-.+.|+.+ .|-.......+.|.+...+.....+..++||+=||.|.|+..|+++ +|+|+|+++.++..++ +.|+
T Consensus 260 ~~~~~~~~~--sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~ 336 (432)
T COG2265 260 GVSFQISPR--SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAA 336 (432)
T ss_pred ceEEEeCCC--CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHH
Confidence 344444432 4444444444455444433322345678999999999999999977 8999999998886555 5566
Q ss_pred HcCCCc-EEEeccccCCCC---CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 317 ERGAPA-MVAAFATRRLPY---PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 317 ~rg~~~-~~~~~d~e~LPf---p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..++.+ .+...+.+++.- ....+|.|+...-.-.. ..-+.+....++|-..+++|+.
T Consensus 337 ~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~----~~~~lk~l~~~~p~~IvYVSCN 397 (432)
T COG2265 337 ANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGA----DREVLKQLAKLKPKRIVYVSCN 397 (432)
T ss_pred HcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCCCCC----CHHHHHHHHhcCCCcEEEEeCC
Confidence 666664 444455555542 23578999954321111 2233334446788999999974
No 214
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.91 E-value=0.0021 Score=62.52 Aligned_cols=135 Identities=17% Similarity=0.119 Sum_probs=76.6
Q ss_pred cCCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHH
Q 008262 238 EKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQF 314 (572)
Q Consensus 238 ~g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~ 314 (572)
.|..+..|.+ ...+...+...+.|...|... .-.+.++||+-||+|.++...+.+ .|+.+|.++..+...+ +.
T Consensus 9 kgr~l~~p~~-~~~RPT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~-~N 84 (183)
T PF03602_consen 9 KGRKLKTPKG-DNTRPTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK-KN 84 (183)
T ss_dssp TT-EEE-TT---TS-SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH-HH
T ss_pred CCCEecCCCC-CCcCCCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH-HH
Confidence 3445555544 223445566677777777632 125689999999999999988776 7999999986553333 23
Q ss_pred HHHcCCCc--EEEecc-ccCCC---CCCCCeeEEEeccccccccCChHHHHHHHH--HhccCCeEEEEEEC
Q 008262 315 ALERGAPA--MVAAFA-TRRLP---YPSQAFDLIHCSRCRINWTRDDGILLLEVN--RMLRAGGYFAWAAQ 377 (572)
Q Consensus 315 A~~rg~~~--~~~~~d-~e~LP---fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~--RvLKPGG~lv~st~ 377 (572)
+...+... .+...| ...+. .....||+|+...-.... .....++..+. ..|+++|.+++-..
T Consensus 85 ~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~-~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 85 LEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKG-LYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSC-HHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccc-hHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 33334332 233333 22222 246899999987542221 10256677666 79999999999863
No 215
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0031 Score=64.59 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=56.6
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp 335 (572)
.++++.+... ..+...|||||+|.|.++..|+++ .|+++++++.++..-....+ ......+...|+-...++
T Consensus 18 v~~kIv~~a~----~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 18 VIDKIVEAAN----ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHhcC----CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcch
Confidence 3667776665 234789999999999999999988 89999999866533222222 112233445566666665
Q ss_pred CC-CeeEEEecc
Q 008262 336 SQ-AFDLIHCSR 346 (572)
Q Consensus 336 ~~-sFDlI~ss~ 346 (572)
+- .++.|+++.
T Consensus 92 ~l~~~~~vVaNl 103 (259)
T COG0030 92 SLAQPYKVVANL 103 (259)
T ss_pred hhcCCCEEEEcC
Confidence 43 688999773
No 216
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.88 E-value=0.011 Score=58.93 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHhccccccCCC-CCEEEEECCCCchhHH----HhccCCeEEEeCCccchHHHHHHHHHHcCCCc-EEEec
Q 008262 254 GADQYLDQIAKMVPDITWGHH-IRVVMDAGCGVASFGA----YLLPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAF 327 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~-~~~VLDIGCGtG~~a~----~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~ 327 (572)
..+-+.+++.+.+.-...... ..+++|||+|.|.=+. ...+.+|+-+|-..+-+. --.+.+.+.++++ .+...
T Consensus 46 ~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~-FL~~~~~eL~L~nv~i~~~ 124 (215)
T COG0357 46 PEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIA-FLREVKKELGLENVEIVHG 124 (215)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHH-HHHHHHHHhCCCCeEEehh
Confidence 345556666665542221222 5899999999994333 333447887776654321 1123445667774 34444
Q ss_pred cccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 328 ATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 328 d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
-+|.+.-....||+|+|..+ .+...++.=+...||+||.+++.
T Consensus 125 RaE~~~~~~~~~D~vtsRAv-----a~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 125 RAEEFGQEKKQYDVVTSRAV-----ASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred hHhhcccccccCcEEEeehc-----cchHHHHHHHHHhcccCCcchhh
Confidence 45555421111999998865 56678888899999999987654
No 217
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.012 Score=57.48 Aligned_cols=136 Identities=20% Similarity=0.161 Sum_probs=82.8
Q ss_pred cCCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHH
Q 008262 238 EKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQF 314 (572)
Q Consensus 238 ~g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~ 314 (572)
+|..+.+|.+ ...+...+...+.|...|... .-.+.++||+=+|+|.++...+.+ .++.+|.+.........+
T Consensus 10 kgr~L~~p~~-~~~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N- 85 (187)
T COG0742 10 KGRKLKTPDG-PGTRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKEN- 85 (187)
T ss_pred cCCcccCCCC-CCcCCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHH-
Confidence 3445566654 233556677788888888631 135789999999999999988887 799999887655333322
Q ss_pred HHHcC--CCcEEEecccc-CCCCCCC--CeeEEEeccccccccCChHHHHHH--HHHhccCCeEEEEEEC
Q 008262 315 ALERG--APAMVAAFATR-RLPYPSQ--AFDLIHCSRCRINWTRDDGILLLE--VNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 315 A~~rg--~~~~~~~~d~e-~LPfp~~--sFDlI~ss~~l~hw~~d~~~~L~e--i~RvLKPGG~lv~st~ 377 (572)
....+ ....+...|.. -|+-... .||+|+.-.-...-.-+....+.. -...|+|+|.+++-..
T Consensus 86 ~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 86 LKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 33333 22333333333 2222222 499999876533111111233333 4577999999999863
No 218
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.78 E-value=0.0068 Score=63.10 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=64.2
Q ss_pred CCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-CC-C-CCCCeeEEEec
Q 008262 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LP-Y-PSQAFDLIHCS 345 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~e~-LP-f-p~~sFDlI~ss 345 (572)
+++|||+=|=||.|+.+.+.. +|++||.|...+..+..+.+. .++. ..+...|+.. +. . ..+.||+|++.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 579999999999998875544 799999999888666655444 3432 2333334321 21 0 24689999986
Q ss_pred ccccc-----ccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRIN-----WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~h-----w~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.-... ...+...++..+.++|+|||.+++++.
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 54332 112335788899999999999988764
No 219
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.003 Score=59.04 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=55.6
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHH--hcc-CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAY--LLP-RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~--L~~-~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
..++..+-+...+ -.+++++|+|||.|.+... +.+ +.|+|+|+.+..+.-. .+.+.+..+...+...++..+
T Consensus 34 asM~~~Ih~Tygd----iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf-~rNaeEfEvqidlLqcdildl 108 (185)
T KOG3420|consen 34 ASMLYTIHNTYGD----IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIF-TRNAEEFEVQIDLLQCDILDL 108 (185)
T ss_pred HHHHHHHHhhhcc----ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHH-hhchHHhhhhhheeeeeccch
Confidence 3344444444443 3578899999999976632 223 3899999999766333 234444444444555566666
Q ss_pred CCCCCCeeEEEeccc
Q 008262 333 PYPSQAFDLIHCSRC 347 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~ 347 (572)
-+..+.||.++.+.-
T Consensus 109 e~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 109 ELKGGIFDTAVINPP 123 (185)
T ss_pred hccCCeEeeEEecCC
Confidence 666688999987754
No 220
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.54 E-value=0.013 Score=65.96 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=42.9
Q ss_pred CCCEEEEECCCCchhHHHhcc------------CCeEEEeCCccchHHHHHHHHHHcCCCcEEEecc-cc-CC---CCCC
Q 008262 274 HIRVVMDAGCGVASFGAYLLP------------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFA-TR-RL---PYPS 336 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~------------~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d-~e-~L---Pfp~ 336 (572)
...+|||.|||+|.|...+++ .+++|+|+++..+..+.............+...+ .. .+ .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 346899999999988776643 2578888888666544433322211111111111 00 01 1112
Q ss_pred CCeeEEEeccccc
Q 008262 337 QAFDLIHCSRCRI 349 (572)
Q Consensus 337 ~sFDlI~ss~~l~ 349 (572)
+.||+|+++.-..
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999987544
No 221
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.46 E-value=0.013 Score=60.11 Aligned_cols=85 Identities=22% Similarity=0.257 Sum_probs=56.1
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC--c--EEEecccc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--A--MVAAFATR 330 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~--~--~~~~~d~e 330 (572)
..+++|.+... .++...|||+|-|||.++..|++. +|+++++++.|+.+-.... .|.+ . .+...|.-
T Consensus 45 ~v~~~I~~ka~----~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~l 117 (315)
T KOG0820|consen 45 LVIDQIVEKAD----LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFL 117 (315)
T ss_pred HHHHHHHhccC----CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccc
Confidence 34555555444 367789999999999999999987 8999999999885544322 2333 2 23333433
Q ss_pred CCCCCCCCeeEEEeccccccc
Q 008262 331 RLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw 351 (572)
..++ -.||.++++.- .++
T Consensus 118 K~d~--P~fd~cVsNlP-yqI 135 (315)
T KOG0820|consen 118 KTDL--PRFDGCVSNLP-YQI 135 (315)
T ss_pred cCCC--cccceeeccCC-ccc
Confidence 3333 36999997633 444
No 222
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.035 Score=56.95 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=68.3
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc--EEEeccccC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR 331 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d~e~ 331 (572)
+..|..+|. ..++.+||+-|.|+|+++.+++.. .++..|+...-..++..++.. .++.. .+..-|...
T Consensus 94 ia~I~~~L~----i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~-hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLE----IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFRE-HGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhc----CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH-hCCCcceEEEEeeccc
Confidence 445555665 357899999999999998888765 789998866544444444433 33332 233334544
Q ss_pred CCC--CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 332 LPY--PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 332 LPf--p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
..| .+..+|.|+.. + +.+-.++--++.+||-+|.-+.+
T Consensus 169 ~GF~~ks~~aDaVFLD-l-----PaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFLD-L-----PAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred CCccccccccceEEEc-C-----CChhhhhhhhHHHhhhcCceEEe
Confidence 444 36789999854 2 44455666777799988754444
No 223
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.30 E-value=0.011 Score=63.81 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=65.2
Q ss_pred CEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCC-CCCCCCeeEEEecccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL-PYPSQAFDLIHCSRCR 348 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~L-Pfp~~sFDlI~ss~~l 348 (572)
-+|||+.||+|..+..++.+ .|+++|+++..+..... .++..+.. ..+...|...+ ....+.||+|....
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~-N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKN-NVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 47999999999999887754 59999999976644333 33333443 23333343332 22235799999653
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
+ ..+..++..+.+.++.||++.++
T Consensus 123 --f-Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 --F-GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --C-CCcHHHHHHHHHhcccCCEEEEE
Confidence 2 34458999999999999999999
No 224
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.025 Score=57.01 Aligned_cols=96 Identities=23% Similarity=0.333 Sum_probs=66.2
Q ss_pred CCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEE-EeccccCCC---CCCCCeeEEEe
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMV-AAFATRRLP---YPSQAFDLIHC 344 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~-~~~d~e~LP---fp~~sFDlI~s 344 (572)
..+++.+||||.-||.|+..++++ .|+++|..-..++. .......... ...+...+. +. +..|+|+|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~-----kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~ 150 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW-----KLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVI 150 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH-----hHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEE
Confidence 457799999999999999999987 89999998764422 1222222211 111222222 22 36789998
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
--+++.. ..+|-.+..+|+++|.++.-.-
T Consensus 151 DvSFISL----~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 151 DVSFISL----KLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred EeehhhH----HHHHHHHHHhcCCCceEEEEec
Confidence 7665544 7899999999999999887643
No 225
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.19 E-value=0.019 Score=57.15 Aligned_cols=111 Identities=14% Similarity=0.246 Sum_probs=69.7
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc--ccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFA--TRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d--~e~ 331 (572)
.+.+.+++.+. .++++||.||-|-|...-.+.++ .-+.++..+.-+ +.+...+... -.+++.... ...
T Consensus 89 piMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-krmr~~gw~e-k~nViil~g~WeDv 161 (271)
T KOG1709|consen 89 PIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-KRMRDWGWRE-KENVIILEGRWEDV 161 (271)
T ss_pred HHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-HHHHhccccc-ccceEEEecchHhh
Confidence 45555555554 46789999999999888888776 344566666322 2222222111 112222111 122
Q ss_pred CC-CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 332 LP-YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 332 LP-fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
++ ++++.||-|.-.....+. +|...+.+.+.|+|||+|.|-+-
T Consensus 162 l~~L~d~~FDGI~yDTy~e~y-Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 162 LNTLPDKHFDGIYYDTYSELY-EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hccccccCcceeEeechhhHH-HHHHHHHHHHhhhcCCCceEEEe
Confidence 23 568899999965333444 77788999999999999998665
No 226
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.15 E-value=0.031 Score=59.55 Aligned_cols=118 Identities=16% Similarity=0.123 Sum_probs=82.2
Q ss_pred CccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCc--
Q 008262 248 GTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA-- 322 (572)
Q Consensus 248 g~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~-- 322 (572)
..+|..+-..-..++++... .+.+|||+=||.|.|+..++.. .|+++|++|..+.... +.++.+++..
T Consensus 168 Kv~Fsprl~~ER~Rva~~v~------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~-eNi~LN~v~~~v 240 (341)
T COG2520 168 KVYFSPRLSTERARVAELVK------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK-ENIRLNKVEGRV 240 (341)
T ss_pred HeEECCCchHHHHHHHhhhc------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH-HHHHhcCcccee
Confidence 34454444444455666655 3689999999999999887765 5999999997664433 3444444443
Q ss_pred EEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 323 MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 323 ~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
....+|........+.||-|++... .+...++..+.+.||+||.+.+-.+
T Consensus 241 ~~i~gD~rev~~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 241 EPILGDAREVAPELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred eEEeccHHHhhhccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEec
Confidence 2344566666655588999997643 3446788889999999999988864
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.05 E-value=0.039 Score=51.13 Aligned_cols=94 Identities=17% Similarity=0.096 Sum_probs=55.6
Q ss_pred CCCCEEEEECCCCchhHHHhcc-----C---CeEEEeCCccchHHHHHHHHHHcC--C-CcE-EEeccccCCCCCCCCee
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP-----R---NVITMSIAPKDVHENQIQFALERG--A-PAM-VAAFATRRLPYPSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~---~V~gvDiSp~dl~~a~~~~A~~rg--~-~~~-~~~~d~e~LPfp~~sFD 340 (572)
.+..+|+|+|||.|+++..|+. . .|+++|..+..+..+. ..+++.+ . ... +...+..... .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 5678899999999999998887 3 8999999987654433 3333333 1 111 1111111111 145566
Q ss_pred EEEeccccccccCChH-HHHHHHHHhccCCeEEEEE
Q 008262 341 LIHCSRCRINWTRDDG-ILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~-~~L~ei~RvLKPGG~lv~s 375 (572)
+++. +|.+.+.. .+|+...+ ++-.+++.
T Consensus 102 ~~vg----LHaCG~Ls~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVG----LHACGDLSDRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEE----eecccchHHHHHHHHHH---cCCCEEEE
Confidence 6663 67777774 55555444 55555444
No 228
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.98 E-value=0.01 Score=63.61 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=40.2
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA 322 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~ 322 (572)
.+.+.+.+.+. ..+ .+|||+=||+|.++..|++. +|+|+|+.+.++..+. +.|...++.+
T Consensus 184 ~l~~~~~~~l~----~~~-~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n 245 (352)
T PF05958_consen 184 KLYEQALEWLD----LSK-GDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDN 245 (352)
T ss_dssp HHHHHHHHHCT----T-T-TEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--S
T ss_pred HHHHHHHHHhh----cCC-CcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCc
Confidence 44444555554 222 37999999999999999987 8999999998886655 4555566654
No 229
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.91 E-value=0.037 Score=55.46 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=63.8
Q ss_pred CCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--C--CCCCeeEE
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--Y--PSQAFDLI 342 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--f--p~~sFDlI 342 (572)
..++.+||-+|..+|..-.++.+- .|+++++|+... ...+..|+.|. +++-.....+.| | --+.+|+|
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~--NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRP--NIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHST--TEEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCC--ceeeeeccCCChHHhhcccccccEE
Confidence 356789999999999777666553 699999999654 44457777764 222222112233 1 13489999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++. + ...+....++.++...||+||.++++.
T Consensus 148 ~~D-V--aQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 148 FQD-V--AQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEE----SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Eec-C--CChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 976 2 221333578888999999999999984
No 230
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.85 E-value=0.0099 Score=62.18 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=52.1
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP 333 (572)
++++.+.+. ..++..+||.+||.|..+..+++. .|+|+|.++.++..+...... .-...+...+...+.
T Consensus 8 l~Evl~~L~----~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 8 LDEVVDALA----IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLK 81 (296)
T ss_pred HHHHHHhhC----CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHH
Confidence 455555554 235579999999999999888865 699999999888665433322 112233333333322
Q ss_pred --CCC--CCeeEEEecc
Q 008262 334 --YPS--QAFDLIHCSR 346 (572)
Q Consensus 334 --fp~--~sFDlI~ss~ 346 (572)
.+. .++|.|++..
T Consensus 82 ~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 82 EVLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHHcCCCccCEEEECC
Confidence 111 2799999754
No 231
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.0019 Score=60.93 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=42.9
Q ss_pred ccCCCCCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 329 TRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
....+|.++|.|+|.+..++.|+.-+. ..++++++|+|||||+|-++.+
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 466789999999999999999986554 4899999999999999999964
No 232
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.71 E-value=0.17 Score=54.34 Aligned_cols=104 Identities=21% Similarity=0.320 Sum_probs=65.9
Q ss_pred CCCCCEEEEECCCCchhHHHhccC------CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC--CC-CCCeeE
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP--YP-SQAFDL 341 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP--fp-~~sFDl 341 (572)
..++.+|||+-++.|.=+.++++. .|+++|.++.-+.. ..+..+..|..+ .+...|...++ .. .+.||.
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~-l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKR-LRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHH-HHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 456799999999999655444443 36999999865533 334445556665 33333444443 22 235999
Q ss_pred EEecc----c-ccc------ccCCh----------HHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSR----C-RIN------WTRDD----------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~----~-l~h------w~~d~----------~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.-. . .++ |.... ..+|..+.++|||||.|+.+|
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 99532 1 111 21111 178899999999999999997
No 233
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.53 E-value=0.027 Score=58.85 Aligned_cols=122 Identities=9% Similarity=0.109 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHH--HHHHHHcCC----------
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQ--IQFALERGA---------- 320 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~--~~~A~~rg~---------- 320 (572)
+..++++|..+.+........-+||-=|||.|.++..|+.. .+.|-++|--|+--.. ++..+..+-
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~ 210 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQY 210 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecc
Confidence 45678888888775433445667999999999999999876 5556677766653221 111111110
Q ss_pred ---------------Cc-------------EEEeccc-cCCC--CCCCCeeEEEeccccccccCChHHHHHHHHHhccCC
Q 008262 321 ---------------PA-------------MVAAFAT-RRLP--YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAG 369 (572)
Q Consensus 321 ---------------~~-------------~~~~~d~-e~LP--fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPG 369 (572)
+. .++.+|. +-.+ -..++||+|+.+ .++.-..+.-.+|..|..+||||
T Consensus 211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc-fFIDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC-FFIDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred ccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEE-EEeechHHHHHHHHHHHHhccCC
Confidence 00 0000110 0001 112469999976 33555556668999999999999
Q ss_pred eEEEEEEC
Q 008262 370 GYFAWAAQ 377 (572)
Q Consensus 370 G~lv~st~ 377 (572)
|+++=..+
T Consensus 290 GvWiNlGP 297 (369)
T KOG2798|consen 290 GVWINLGP 297 (369)
T ss_pred cEEEeccc
Confidence 99986654
No 234
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.49 E-value=0.029 Score=55.65 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc---C-CeEEEeCCccchHHHHH--HH----HHHcCCC---
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP---R-NVITMSIAPKDVHENQI--QF----ALERGAP--- 321 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~---~-~V~gvDiSp~dl~~a~~--~~----A~~rg~~--- 321 (572)
.-..+..+.+.+. ..+....+|||||.|....+.+- . ..+|+++.+.-...+.. +. ....+..
T Consensus 27 ~~~~~~~il~~~~----l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~ 102 (205)
T PF08123_consen 27 SPEFVSKILDELN----LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGK 102 (205)
T ss_dssp HHHHHHHHHHHTT------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---E
T ss_pred CHHHHHHHHHHhC----CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3344555555554 24678999999999965433332 2 59999998863322221 11 1112221
Q ss_pred cEEEeccccCCCCC---CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 322 AMVAAFATRRLPYP---SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 322 ~~~~~~d~e~LPfp---~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+...|.-..++. -..-|+|+++... +.++....|.+....||+|-+++ ++.
T Consensus 103 v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~II-s~~ 158 (205)
T PF08123_consen 103 VELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARII-STK 158 (205)
T ss_dssp EEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEE-ESS
T ss_pred ceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEE-ECC
Confidence 11222222111110 0246999998642 33455677788888999988875 543
No 235
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.44 E-value=0.042 Score=59.49 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=45.2
Q ss_pred CCEEEEECCCCchhHHHhcc-------------------CCeEEEeCCccchHHHHHHHHHH-------------cCCCc
Q 008262 275 IRVVMDAGCGVASFGAYLLP-------------------RNVITMSIAPKDVHENQIQFALE-------------RGAPA 322 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~-------------------~~V~gvDiSp~dl~~a~~~~A~~-------------rg~~~ 322 (572)
..+|+|+|||+|..+..+.. -+|.--|+-.+|...-......- .+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 56899999999965543321 14555677777765433322110 11111
Q ss_pred EEEec---cccCCCCCCCCeeEEEeccccccccCC
Q 008262 323 MVAAF---ATRRLPYPSQAFDLIHCSRCRINWTRD 354 (572)
Q Consensus 323 ~~~~~---d~e~LPfp~~sFDlI~ss~~l~hw~~d 354 (572)
.+..+ ....--||+++.+++||+.+ +||...
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~s-lHWLS~ 177 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFS-LHWLSQ 177 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeecc-ceeccc
Confidence 22211 11222278999999999876 788763
No 236
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.26 E-value=0.034 Score=56.94 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
....++.+.+.+. ..+...|||||+|+|.++..|++. +|+++|+++.....-...+. ......+...|...+
T Consensus 15 ~~~~~~~Iv~~~~----~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 15 DPNIADKIVDALD----LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHHT----CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTS
T ss_pred CHHHHHHHHHhcC----CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecchhcc
Confidence 3456777777775 236789999999999999999876 89999999865422221111 122334555566666
Q ss_pred CCCC---CCeeEEEeccccccccCChHHHHHHHHHhccC
Q 008262 333 PYPS---QAFDLIHCSRCRINWTRDDGILLLEVNRMLRA 368 (572)
Q Consensus 333 Pfp~---~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKP 368 (572)
..+. +.-..|+++.- + .-...++.++...-+.
T Consensus 89 ~~~~~~~~~~~~vv~NlP---y-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLP---Y-NISSPILRKLLELYRF 123 (262)
T ss_dssp CGGGHCSSSEEEEEEEET---G-TGHHHHHHHHHHHGGG
T ss_pred ccHHhhcCCceEEEEEec---c-cchHHHHHHHhhcccc
Confidence 6543 45667776532 2 2224666666664444
No 237
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.21 E-value=0.053 Score=53.27 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=62.8
Q ss_pred CCCCEEEEECCCCchhHHHhc--cC-CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLL--PR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~--~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
-.+++|||+|.|+|..+..-+ .. .|+..|+.|... .+..-.+..++....+... +.+- .+..||+|+.+.++.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~i~~~~~--d~~g-~~~~~Dl~LagDlfy 153 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVSILFTHA--DLIG-SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccceeEEeec--cccC-CCcceeEEEeeceec
Confidence 356899999999996554433 33 788889987433 3222233444543333322 2333 678999999876533
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEECCCCCCH
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHE 383 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl 383 (572)
.- ..-..++. +.+.|+-.|.-++..-|.-..+
T Consensus 154 ~~-~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 154 NH-TEADRLIP-WKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred Cc-hHHHHHHH-HHHHHHhCCCEEEEeCCCCCCC
Confidence 22 22235555 8888877777777654554443
No 238
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.04 E-value=0.1 Score=55.40 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=63.8
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc---EEEecc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA---MVAAFA 328 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~---~~~~~d 328 (572)
..++.|....+++ ..++|||+|.|.|.-..++-+- +++.++.|+. +.+.-...+..-.... .-....
T Consensus 100 asL~~L~~~~~df----apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~nv~t~~td~r~s~vt 174 (484)
T COG5459 100 ASLDELQKRVPDF----APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAENVSTEKTDWRASDVT 174 (484)
T ss_pred HHHHHHHHhCCCc----CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHhhcccccCCCCCCccc
Confidence 4455565566543 5677999999988655544432 5555666652 3222222222211110 000111
Q ss_pred ccCCCCC-CCCeeEEEeccccccccCCh--HHHHHHHHHhccCCeEEEEEEC
Q 008262 329 TRRLPYP-SQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 329 ~e~LPfp-~~sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++++++ ...|++|+...-+++-.... ...++.+..++.|||.|++...
T Consensus 175 ~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 175 EDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 3456654 35677776544333332221 2478888899999999999964
No 239
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.98 E-value=0.096 Score=61.18 Aligned_cols=102 Identities=13% Similarity=0.054 Sum_probs=63.9
Q ss_pred CCCEEEEECCCCchhHHHhcc----------------------------------------------CCeEEEeCCccch
Q 008262 274 HIRVVMDAGCGVASFGAYLLP----------------------------------------------RNVITMSIAPKDV 307 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~----------------------------------------------~~V~gvDiSp~dl 307 (572)
+...++|-+||+|.+....+. ..++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 457899999999987754321 1489999999988
Q ss_pred HHHHHHHHHHcCCCc--EEEeccccCCCCC--CCCeeEEEeccccccccCC---hHHHHHHH---HHhccCCeEEEEEE
Q 008262 308 HENQIQFALERGAPA--MVAAFATRRLPYP--SQAFDLIHCSRCRINWTRD---DGILLLEV---NRMLRAGGYFAWAA 376 (572)
Q Consensus 308 ~~a~~~~A~~rg~~~--~~~~~d~e~LPfp--~~sFDlI~ss~~l~hw~~d---~~~~L~ei---~RvLKPGG~lv~st 376 (572)
..+..+ +...|+.. .+...|...++.+ .++||+|+++.-...-..+ ...+..++ .+.+.+|+.+++.+
T Consensus 270 ~~A~~N-~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 270 QAARKN-ARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHH-HHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 666543 33445532 3445566666543 3579999998653322221 22333333 34444888887765
No 240
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.28 E-value=0.012 Score=51.36 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=36.5
Q ss_pred EEECCCCchhHHHhccC-------CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccc-cCCC-CCCCCeeEEEeccc
Q 008262 279 MDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT-RRLP-YPSQAFDLIHCSRC 347 (572)
Q Consensus 279 LDIGCGtG~~a~~L~~~-------~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~-e~LP-fp~~sFDlI~ss~~ 347 (572)
||||+..|..+..+++. +++++|..+. . +...+..++.+.. ..+...+. +.++ ++.++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~-~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D-EQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-c-cccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999877776653 5899999874 1 1111222222222 22333322 1222 2357999999753
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
.|-.+.....+..+.+.|+|||.+++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 333244567889999999999999875
No 241
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.04 E-value=0.11 Score=51.37 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=24.8
Q ss_pred CEEEEECCCCchhHHHhccC----CeEEEeCCcc
Q 008262 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPK 305 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~ 305 (572)
-.+.|||||.|.+...|... -++|++|--.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~K 95 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDK 95 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHH
Confidence 45899999999999998876 6889887543
No 242
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=93.93 E-value=0.15 Score=53.05 Aligned_cols=103 Identities=18% Similarity=0.304 Sum_probs=64.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEe-ccccCC-C-CCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAA-FATRRL-P-YPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~-~d~e~L-P-fp~~sFDlI~s 344 (572)
.++.+|||+.+|.|.=+.++++. .|++.|++..-+..-. +.++..|....... .|...+ + .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 46688999999999655444432 7999999987553332 34445566554333 333333 2 22346999995
Q ss_pred cc-c--cccccCCh------------------HHHHHHHHHhc----cCCeEEEEEE
Q 008262 345 SR-C--RINWTRDD------------------GILLLEVNRML----RAGGYFAWAA 376 (572)
Q Consensus 345 s~-~--l~hw~~d~------------------~~~L~ei~RvL----KPGG~lv~st 376 (572)
.. | ...+..++ ..+|..+.+.| ||||+++.+|
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 22 1 11111111 16888999999 9999999998
No 243
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=93.88 E-value=0.24 Score=52.99 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=77.4
Q ss_pred eccCCCcccccc-HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH
Q 008262 243 KFPGGGTQFIHG-ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE 317 (572)
Q Consensus 243 ~Fpggg~~f~~g-~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~ 317 (572)
-+-.|+.||... ..+|-+.+.- +........++||-+|.|.|.-+++|++. +|+-+|++|.|++-+....+..
T Consensus 259 LYldG~LQfsTrDe~RYhEsLV~--pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr 336 (508)
T COG4262 259 LYLDGGLQFSTRDEYRYHESLVY--PALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLR 336 (508)
T ss_pred EEEcCceeeeechhhhhhheeee--cccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhh
Confidence 445566777442 3345444421 21111245689999999999999999876 7999999999986544222211
Q ss_pred c---C----CCcEEEecccc-CCCCCCCCeeEEEeccccccccCCh-----HHHHHHHHHhccCCeEEEEEE
Q 008262 318 R---G----APAMVAAFATR-RLPYPSQAFDLIHCSRCRINWTRDD-----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 318 r---g----~~~~~~~~d~e-~LPfp~~sFDlI~ss~~l~hw~~d~-----~~~L~ei~RvLKPGG~lv~st 376 (572)
. + ....+...|+- -+.-..+.||.|+...- ..-.+.. ..+..-+.|.|+++|.+++..
T Consensus 337 ~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 337 ALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred hhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 1 1 11223333322 22234568999995421 1111111 256677889999999999984
No 244
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.86 E-value=0.18 Score=53.72 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=64.1
Q ss_pred CCCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
+++.+|+=+|+| .|.++.+++.. +|+++|.++. ..+.|++.|....+...+.+...--.+.||+|+.. +
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~-----K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t-v- 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE-----KLELAKKLGADHVINSSDSDALEAVKEIADAIIDT-V- 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH-----HHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC-C-
Confidence 567889999988 34677777663 8999998874 44778777765544422222222112349999964 2
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEECC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~P 378 (572)
. ...+.+..+.||+||.+++...+
T Consensus 238 -----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 56788889999999999999754
No 245
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.79 E-value=0.25 Score=52.59 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=39.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC--------------------CeEEEeCCccchHHHHHHHHHHc----CCCcEEEec-
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--------------------NVITMSIAPKDVHENQIQFALER----GAPAMVAAF- 327 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--------------------~V~gvDiSp~dl~~a~~~~A~~r----g~~~~~~~~- 327 (572)
.+.-+|+|+||..|..+..+... +|+--|+-.+|...-........ .....+..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 45568999999999655443221 46666888887754332221110 022223221
Q ss_pred --cccCCCCCCCCeeEEEeccccccccC
Q 008262 328 --ATRRLPYPSQAFDLIHCSRCRINWTR 353 (572)
Q Consensus 328 --d~e~LPfp~~sFDlI~ss~~l~hw~~ 353 (572)
....-=||++|.|+++|+.+ +||..
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~a-lHWLS 121 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYA-LHWLS 121 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred CchhhhccCCCCceEEEEEech-hhhcc
Confidence 22222378999999999866 77765
No 246
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=93.76 E-value=0.36 Score=49.83 Aligned_cols=101 Identities=15% Similarity=0.225 Sum_probs=48.7
Q ss_pred CCCEEEEECCCCc--hhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-------------CC
Q 008262 274 HIRVVMDAGCGVA--SFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-------------LP 333 (572)
Q Consensus 274 ~~~~VLDIGCGtG--~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~-------------LP 333 (572)
..+..||||||-- ....++++ .+|+-+|..|.-+..++.-.+....-...+...|..+ |.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 5688999999943 23333432 2899999999655333221221111012343334222 22
Q ss_pred CCCCCeeEEEeccccccccCC---hHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 YPSQAFDLIHCSRCRINWTRD---DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d---~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
| ++..=+++ ..+ +|+..| +..++..+...|.||.+|+++..
T Consensus 148 ~-~rPVavll-~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 148 F-DRPVAVLL-VAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp T-TS--EEEE-CT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred C-CCCeeeee-eee-eccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 2 34444444 335 444444 46999999999999999999964
No 247
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=0.16 Score=48.61 Aligned_cols=107 Identities=12% Similarity=0.187 Sum_probs=62.8
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEE-ec----cccCCCCCCCCeeE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVA-AF----ATRRLPYPSQAFDL 341 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~-~~----d~e~LPfp~~sFDl 341 (572)
.+++||++|.|--.++..|... .|.-.|-....+ ..++....++.. ..-+ +. ...+.....+.||+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv--rnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV--RNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH--HHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccE
Confidence 3478999999965555555433 566666654433 222333222210 0001 00 01122234568999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCH
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHE 383 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl 383 (572)
|+|+.| ..+.+.-..+..-|.+.|||.|.-++..+--..++
T Consensus 107 IlaADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL 147 (201)
T KOG3201|consen 107 ILAADC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSL 147 (201)
T ss_pred EEeccc-hhHHHHHHHHHHHHHHHhCcccceeEecCcccchH
Confidence 999998 44434457889999999999999888865333333
No 248
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=92.56 E-value=0.23 Score=47.61 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=40.1
Q ss_pred CEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCC-C-CCCCC-eeEEEecc
Q 008262 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL-P-YPSQA-FDLIHCSR 346 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~L-P-fp~~s-FDlI~ss~ 346 (572)
..|||+.||.|..+.+++.. .|+++|+++..+.-++ ..|+..|+. ..+...|...+ + +.... ||+|+++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 36999999999999999987 7999999997664333 345555543 23334443222 1 11122 89999764
No 249
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.50 E-value=0.67 Score=50.07 Aligned_cols=103 Identities=11% Similarity=0.104 Sum_probs=69.2
Q ss_pred CCCEEEEECCCCchhHHHhccC-------------------------------------------CeEEEeCCccchHHH
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-------------------------------------------NVITMSIAPKDVHEN 310 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-------------------------------------------~V~gvDiSp~dl~~a 310 (572)
+...++|-=||+|.+....+-. .++|+|+++.++..+
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 3468999999999887543321 166999999998665
Q ss_pred HHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEeccccc-cccCC--h----HHHHHHHHHhccCCeEEEEEEC
Q 008262 311 QIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI-NWTRD--D----GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 311 ~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l~-hw~~d--~----~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. ..|+..|+. ..+...|...++-+-+.+|+|+|+.-.- -+... . ..+.+.+.+.++--+.+++++.
T Consensus 271 k-~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 271 K-ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred H-HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 5 456666765 3455567777764447999999986321 11111 1 2445566788888889999874
No 250
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=92.24 E-value=0.14 Score=46.62 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=29.5
Q ss_pred EEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHH
Q 008262 277 VVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQ 313 (572)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~ 313 (572)
++||+|||.|.++..++.. +|+++|.++.+....+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHH
Confidence 4899999999998887754 599999999877554433
No 251
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=92.22 E-value=0.15 Score=49.88 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=60.3
Q ss_pred CEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHc----CCCc-EEEeccccCCCCCCCCeeEEEecccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER----GAPA-MVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~r----g~~~-~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
..+.|+|+|+|.++...+.. +|++++..|.-. ..|.+. |..+ .+...|+....| ...|+|+|-..-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 56999999999887665554 899999988532 334333 2222 344455555566 567999986431
Q ss_pred ccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 349 INWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 349 ~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
-.+..+. ...+..+...||-+|.++=.
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccccH
Confidence 2222222 36777788889999887543
No 252
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.15 E-value=0.79 Score=45.51 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=65.9
Q ss_pred CCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC----CCCCCeeEEE
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP----YPSQAFDLIH 343 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP----fp~~sFDlI~ 343 (572)
..++.+||=+|+.+|....++.+- .++++++|+....+ .+..|.+|.. ++-.....+.| .-=+..|+|+
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~re-Ll~~a~~R~N--i~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRE-LLDVAEKRPN--IIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHH-HHHHHHhCCC--ceeeecccCCcHHhhhhcccccEEE
Confidence 467889999999999877777654 59999999987644 4466666532 22211112333 1134689999
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
+.- .-.+....+..++...||+||+++++
T Consensus 151 ~DV---AQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 151 QDV---AQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred Eec---CCchHHHHHHHHHHHhcccCCeEEEE
Confidence 652 22122357888899999999988887
No 253
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.12 E-value=0.58 Score=49.13 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHhccccccC-CCCCEEEEECCCCch----hHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcEEE---
Q 008262 254 GADQYLDQIAKMVPDITWG-HHIRVVMDAGCGVAS----FGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVA--- 325 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~-~~~~~VLDIGCGtG~----~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~--- 325 (572)
+...|+..|.++|...... ...-++||||||..- ++..+..-+++|.|+++..+..|+....+..++...+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 5567888888877642111 124679999999873 33333344899999999888777655554424432221
Q ss_pred eccccC----CCCCCCCeeEEEeccccccc
Q 008262 326 AFATRR----LPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 326 ~~d~e~----LPfp~~sFDlI~ss~~l~hw 351 (572)
..+... +--+.+.||+.+|+.-++.-
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred cCCccccchhhhcccceeeEEecCCccccC
Confidence 111111 22235689999998764443
No 254
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=92.07 E-value=1.3 Score=48.23 Aligned_cols=104 Identities=15% Similarity=0.293 Sum_probs=66.0
Q ss_pred CCCCCEEEEECCCCch----hHHHhccC-CeEEEeCCccchHHHHHHHHHHcCCCcEEE-eccccCCC---CCCCCeeEE
Q 008262 272 GHHIRVVMDAGCGVAS----FGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP---YPSQAFDLI 342 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~----~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~-~~d~e~LP---fp~~sFDlI 342 (572)
.+++.+|||+-+-.|. .++.|... .|++.|.+..-+. ...+.+...|+.+.+. ..|...+| |+. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~-~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLK-SLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHH-HHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 4678899999999883 33344444 6788887765442 2334455567665443 34555554 554 89999
Q ss_pred E----ecccccc-------ccCC----------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 343 H----CSRCRIN-------WTRD----------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 343 ~----ss~~l~h-------w~~d----------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. |+..-+- |... ..++|..+...+++||+|+.+|-
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 8 4441111 1111 12788889999999999999984
No 255
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=92.05 E-value=0.68 Score=46.00 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=60.7
Q ss_pred EEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc-E-E-EeccccCCCCCCCCeeEEEecccccc
Q 008262 278 VMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-M-V-AAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 278 VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~-~-~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
|.||||--|.+..+|.++ .++++|+++.-+..+....+. .++.. . + ...+.+.++- .+..|.|+...+--.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGGG--G-GG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCcccccCC-CCCCCEEEEecCCHH
Confidence 689999999999999987 699999999888777655554 44332 1 2 2222344432 223788887665222
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
. ...+|.+....++..-.|++.- .....++|+
T Consensus 79 l---I~~ILe~~~~~~~~~~~lILqP---~~~~~~LR~ 110 (205)
T PF04816_consen 79 L---IIEILEAGPEKLSSAKRLILQP---NTHAYELRR 110 (205)
T ss_dssp H---HHHHHHHTGGGGTT--EEEEEE---SS-HHHHHH
T ss_pred H---HHHHHHhhHHHhccCCeEEEeC---CCChHHHHH
Confidence 2 2467777777787777898883 244455554
No 256
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.67 E-value=0.76 Score=47.73 Aligned_cols=102 Identities=11% Similarity=0.114 Sum_probs=53.3
Q ss_pred CCCEEEEECCCCchhHHHhc-cC-----CeEEEeCCccchHHHHHHHHH---HcCCCcEEEeccccCCCCCCCCeeEEEe
Q 008262 274 HIRVVMDAGCGVASFGAYLL-PR-----NVITMSIAPKDVHENQIQFAL---ERGAPAMVAAFATRRLPYPSQAFDLIHC 344 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~-~~-----~V~gvDiSp~dl~~a~~~~A~---~rg~~~~~~~~d~e~LPfp~~sFDlI~s 344 (572)
.+++|+=||||.=-++..+. +. .|+++|+++.....++ +... ..+....+...|....+..-..||+|+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 45699999999764444333 22 5889999987664443 2222 1122234444455555544468999997
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.....--..+...+|.++.+.++||..+++..
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 64422222355799999999999999999885
No 257
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.65 E-value=0.34 Score=53.92 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=66.1
Q ss_pred CCEEEEECCCCchhHHHhcc------C--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecc
Q 008262 275 IRVVMDAGCGVASFGAYLLP------R--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~------~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
...|+-+|.|-|-+....++ + ++++++-.|..+..-+...-..-.-...+...|+..++-+....|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 45689999999966544332 2 78899988876532221111111123345556788888556899999965
Q ss_pred ccccccCCh--HHHHHHHHHhccCCeEEEEE
Q 008262 347 CRINWTRDD--GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 347 ~l~hw~~d~--~~~L~ei~RvLKPGG~lv~s 375 (572)
.+..+.++. +..|.-+.+.|||+|..+=+
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 445554433 69999999999999987654
No 258
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=91.43 E-value=1.4 Score=43.41 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=56.0
Q ss_pred CCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc----------cCCCCCC
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT----------RRLPYPS 336 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~----------e~LPfp~ 336 (572)
..+..+|||+||..|+|+....++ -|.|+|+-.... -.|... +...|. |. .+.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p---------~~Ga~~-i~~~dvtdp~~~~ki~e~--lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP---------PEGATI-IQGNDVTDPETYRKIFEA--LPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC---------CCCccc-ccccccCCHHHHHHHHHh--CCC
Confidence 356789999999999999887766 588998754311 112111 111121 22 356
Q ss_pred CCeeEEEecccccccc----CChH-------HHHHHHHHhccCCeEEEEEE
Q 008262 337 QAFDLIHCSRCRINWT----RDDG-------ILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw~----~d~~-------~~L~ei~RvLKPGG~lv~st 376 (572)
...|+|+|.. +..-. .|.. .+|.-....++|+|.|+.-.
T Consensus 135 r~VdvVlSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 135 RPVDVVLSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred CcccEEEecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 8899999753 22211 1112 23444456778999999985
No 259
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=91.00 E-value=0.86 Score=45.01 Aligned_cols=101 Identities=17% Similarity=0.117 Sum_probs=55.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchH-------HHHHHHHHHcCCCcE-EEeccccCCC------
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVH-------ENQIQFALERGAPAM-VAAFATRRLP------ 333 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~-------~a~~~~A~~rg~~~~-~~~~d~e~LP------ 333 (572)
+++.+|+|+=-|.|.|++.+... .|++. .+.++. ......+++....+. ......-.++
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~--~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY--VPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEe--cchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 56789999999999999988765 34443 232221 111111222211110 0000111122
Q ss_pred -CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 -YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 -fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+..++|.++.... +| ......+..++++.|||||.+++.++
T Consensus 125 ~~~~~~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 125 LVPTAQNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccchhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 22334444443322 33 23346899999999999999999865
No 260
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=90.69 E-value=0.28 Score=54.48 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=54.1
Q ss_pred CCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHH
Q 008262 239 KDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL 316 (572)
Q Consensus 239 g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~ 316 (572)
+-.|+|+-+ ..| ......++.|...+.+.........+||+=||||.++..++.+ .|+|+++++..+..|. ..|.
T Consensus 350 ~ltF~iSp~-AFF-Q~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~-~nA~ 426 (534)
T KOG2187|consen 350 GLTFRISPG-AFF-QTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE-KNAQ 426 (534)
T ss_pred CeEEEECCc-hhh-ccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhh-hcch
Confidence 445555432 223 3333445555555554443455688999999999999999987 8999999998775554 4555
Q ss_pred HcCCCc
Q 008262 317 ERGAPA 322 (572)
Q Consensus 317 ~rg~~~ 322 (572)
..|+.+
T Consensus 427 ~NgisN 432 (534)
T KOG2187|consen 427 INGISN 432 (534)
T ss_pred hcCccc
Confidence 666654
No 261
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=89.64 E-value=0.39 Score=42.97 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIA 303 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS 303 (572)
.+.....|||||+|.+..-|... .-.|+|.-
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 45678999999999988877766 45566543
No 262
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=89.13 E-value=0.2 Score=44.88 Aligned_cols=39 Identities=23% Similarity=0.587 Sum_probs=27.5
Q ss_pred CeeEEEecccc--cc--ccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 338 AFDLIHCSRCR--IN--WTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 338 sFDlI~ss~~l--~h--w~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
.||+|.|..+. +| |.++. ..+|+.+++.|+|||.|++.-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999987543 22 22221 379999999999999999983
No 263
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=88.67 E-value=2.2 Score=39.97 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=47.0
Q ss_pred CeEEEeCCccchHHHHHHHHHHcCC-C-cEEEeccccCCC-C-CCCCeeEEEeccccccccC-----Ch---HHHHHHHH
Q 008262 296 NVITMSIAPKDVHENQIQFALERGA-P-AMVAAFATRRLP-Y-PSQAFDLIHCSRCRINWTR-----DD---GILLLEVN 363 (572)
Q Consensus 296 ~V~gvDiSp~dl~~a~~~~A~~rg~-~-~~~~~~d~e~LP-f-p~~sFDlI~ss~~l~hw~~-----d~---~~~L~ei~ 363 (572)
+|+++|+-+..+......... .+. . ..+...+-+.+. + +.+.+|+|+-+...+.-.+ .+ -.+++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~-~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEE-AGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHH-TT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHh-cCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 478999888777555443333 333 2 223333333443 2 2358999997754433211 11 27899999
Q ss_pred HhccCCeEEEEEECCCCC
Q 008262 364 RMLRAGGYFAWAAQPVYK 381 (572)
Q Consensus 364 RvLKPGG~lv~st~P~~~ 381 (572)
++|+|||.+.+...++..
T Consensus 80 ~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHEEEEEEEEEEE--STC
T ss_pred HhhccCCEEEEEEeCCCC
Confidence 999999999999754433
No 264
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=88.00 E-value=1.2 Score=49.05 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=66.9
Q ss_pred CCCCEEEEECCCCc--hhHHHhccC----CeEEEeCCccchHHHHHHHHH--HcCCCcEEE-eccccCCCCC-CCCeeEE
Q 008262 273 HHIRVVMDAGCGVA--SFGAYLLPR----NVITMSIAPKDVHENQIQFAL--ERGAPAMVA-AFATRRLPYP-SQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG--~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~--~rg~~~~~~-~~d~e~LPfp-~~sFDlI 342 (572)
..+..++|+|.|.| .++..++-+ .+..||.+-.|......+.-. +.|.....- ..--..+|.. .+.||+|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 35677889988876 444444433 688889888776443332221 222211111 1112456644 4569999
Q ss_pred EeccccccccCChH---HHHHHHHHhccCCeEEEEEECCCCCCHHHHHHH
Q 008262 343 HCSRCRINWTRDDG---ILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEH 389 (572)
Q Consensus 343 ~ss~~l~hw~~d~~---~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~ 389 (572)
+|++.+++...... ..-.-+.+..++||++++........++-+.++
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~ea 328 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTEA 328 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHHH
Confidence 99988777644332 223335677899999999864223333434443
No 265
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.93 E-value=8.6 Score=38.75 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=74.6
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP 333 (572)
.+..+++.+.. ..++.||||--|++..+|.+. .+++.|+++.-+..+..++.+...... +.+.-..-|+
T Consensus 6 RL~~va~~V~~------~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~-i~vr~~dgl~ 78 (226)
T COG2384 6 RLTTVANLVKQ------GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSER-IDVRLGDGLA 78 (226)
T ss_pred HHHHHHHHHHc------CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcce-EEEeccCCcc
Confidence 35566666652 344999999999999999876 688999999888766555554333222 2221122233
Q ss_pred -CC-CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 334 -YP-SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 334 -fp-~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
+. +..+|.|+...+.-.. ...+|.+-.+.|+.==+|++. | .....+||+
T Consensus 79 ~l~~~d~~d~ivIAGMGG~l---I~~ILee~~~~l~~~~rlILQ--P-n~~~~~LR~ 129 (226)
T COG2384 79 VLELEDEIDVIVIAGMGGTL---IREILEEGKEKLKGVERLILQ--P-NIHTYELRE 129 (226)
T ss_pred ccCccCCcCEEEEeCCcHHH---HHHHHHHhhhhhcCcceEEEC--C-CCCHHHHHH
Confidence 33 3479999876552211 246777777777765677776 2 344555555
No 266
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=87.91 E-value=0.17 Score=52.36 Aligned_cols=38 Identities=32% Similarity=0.379 Sum_probs=26.2
Q ss_pred CeeEEEeccccccccCChHHH-HHHHHHhccCCeEEEEEE
Q 008262 338 AFDLIHCSRCRINWTRDDGIL-LLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~~~~-L~ei~RvLKPGG~lv~st 376 (572)
.||+|.++..+... ...... .......++++|.++.+.
T Consensus 196 ~ydlIlsSetiy~~-~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 196 HYDLILSSETIYSI-DSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred chhhhhhhhhhhCc-chhhhhHhhhhhhcCCccchhhhhh
Confidence 68888887765544 333333 666777888999988774
No 267
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=86.47 E-value=2.5 Score=43.23 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=42.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
..+.+|||||||.--++...... .++|.|++..++.- -..+....+.+..+...|...- .+....|+.+..-+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~-l~~~l~~l~~~~~~~v~Dl~~~-~~~~~~DlaLllK~ 180 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEF-LNAFLAVLGVPHDARVRDLLSD-PPKEPADLALLLKT 180 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHH-HHHHHHHTT-CEEEEEE-TTTS-HTTSEESEEEEET-
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHH-HHHHHHhhCCCcceeEeeeecc-CCCCCcchhhHHHH
Confidence 35789999999999888766554 79999999876522 2233344455544444332222 24567899986543
No 268
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=83.67 E-value=0.84 Score=43.76 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=32.8
Q ss_pred CCCeeEEEecccccccc----CCh------HHHHHHHHHhccCCeEEEEEEC
Q 008262 336 SQAFDLIHCSRCRINWT----RDD------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~----~d~------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++||.+.|..++.|.. .|+ ...+.++.++|||||.|+++.+
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 47899999877766642 111 3889999999999999999964
No 269
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=83.60 E-value=4 Score=42.93 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=55.3
Q ss_pred CCCEEEEECCC-CchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEec--cccCCCCCCCCeeEEEecc
Q 008262 274 HIRVVMDAGCG-VASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAF--ATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 274 ~~~~VLDIGCG-tG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~--d~e~LPfp~~sFDlI~ss~ 346 (572)
+..+||-+||| .|.++..++.. .|+++|.++. ..+.+++.|....+... +..++.-..+.||+|+...
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~-----~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR-----SLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH-----HHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence 46789989986 35555555543 4778877653 34667776654322111 1111111123589998542
Q ss_pred ccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. ....+..+.++||+||.+++..
T Consensus 244 G-------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 244 G-------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 1356788899999999999875
No 270
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=83.48 E-value=4.1 Score=41.61 Aligned_cols=112 Identities=18% Similarity=0.166 Sum_probs=67.9
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~ 331 (572)
..+..|..-+.++ +..+..+||=+|+++|..-.+..+- -|+++++|+..- ...+..|+.|-...-+.. | .+
T Consensus 140 KLAA~I~gGvdni-hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG-RdL~nmAkkRtNiiPIiE-D-Ar 215 (317)
T KOG1596|consen 140 KLAAGILGGVDNI-HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG-RDLINMAKKRTNIIPIIE-D-AR 215 (317)
T ss_pred HHHHHhhcCccce-eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccch-HHHHHHhhccCCceeeec-c-CC
Confidence 3333443333332 3467899999999999776666554 689999987532 333456665532111211 2 23
Q ss_pred CCC----CCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 332 LPY----PSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 332 LPf----p~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
.|. .-.-.|+|++. + .- +|. ..+..++.-.||+||.|+++.
T Consensus 216 hP~KYRmlVgmVDvIFaD-v--aq-pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 216 HPAKYRMLVGMVDVIFAD-V--AQ-PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred CchheeeeeeeEEEEecc-C--CC-chhhhhhhhhhhhhhccCCeEEEEE
Confidence 332 12367888864 2 11 233 466778899999999999995
No 271
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=83.14 E-value=4.7 Score=45.52 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=58.6
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc---------CCC------
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR---------RLP------ 333 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e---------~LP------ 333 (572)
.++.+||=+|||. |..+...+.. .|+++|.++. ..+.+++.|..........+ .+.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~-----rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE-----VAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHcCCeEEEeccccccccccchhhhcchhHHHH
Confidence 3578999999997 4444444333 7889988764 33566666544221111000 000
Q ss_pred ----CCC--CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 ----YPS--QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 ----fp~--~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.+ +.+|+|+.... ..-...+..+.+++.+.+||||.++....
T Consensus 238 ~~~~~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 46999997532 22212333446999999999999988753
No 272
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=82.65 E-value=4.7 Score=43.27 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=58.7
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-----C-CC-CCCCee
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-----L-PY-PSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~-----L-Pf-p~~sFD 340 (572)
.+..+||.+|||. |.++..+++. .|++++.++.. .+.+++.+... +......+ + .+ ..+.+|
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~-----~~~~~~~~~~~-vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPER-----LEMARSHLGAE-TINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH-----HHHHHHcCCcE-EEcCCcchHHHHHHHHHcCCCCCC
Confidence 3567899999987 7777666654 37888777543 35555552111 21111110 1 12 234699
Q ss_pred EEEeccccc--------------cccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRI--------------NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~--------------hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+...... +-..+....+.++.+.|+++|.+++..
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 998642100 111234568899999999999998875
No 273
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.23 E-value=1.8 Score=43.78 Aligned_cols=92 Identities=15% Similarity=0.223 Sum_probs=56.5
Q ss_pred CCEEEEECCCCchhHHHhccC-------------CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-------C-
Q 008262 275 IRVVMDAGCGVASFGAYLLPR-------------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-------P- 333 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-------------~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-------P- 333 (572)
..+++|+-...|+|+..|.++ .|++||+-+... -.| ......|+... .
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP---------I~G--V~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP---------IEG--VIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc---------cCc--eEEeecccCCHhHHHHHHHH
Confidence 578999999999998877643 289999876311 111 11222233221 1
Q ss_pred CCCCCeeEEEeccc----cccccCCh------HHHHHHHHHhccCCeEEEEEEC
Q 008262 334 YPSQAFDLIHCSRC----RINWTRDD------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 fp~~sFDlI~ss~~----l~hw~~d~------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|..+..|+|+|... -+|=.++. -.+|.-..++|||||.|+.--+
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 44567899998763 12211111 1455667889999999987754
No 274
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=82.12 E-value=3.2 Score=42.18 Aligned_cols=110 Identities=12% Similarity=0.203 Sum_probs=61.6
Q ss_pred eeeccCCCcc-ccccHHHHHHHHHHhcccccc--CCCCCEEEEECCCCchh----HHHhccCCeEEEeCCccchHHHHHH
Q 008262 241 KFKFPGGGTQ-FIHGADQYLDQIAKMVPDITW--GHHIRVVMDAGCGVASF----GAYLLPRNVITMSIAPKDVHENQIQ 313 (572)
Q Consensus 241 ~~~Fpggg~~-f~~g~~~~i~~L~~~L~~i~~--~~~~~~VLDIGCGtG~~----a~~L~~~~V~gvDiSp~dl~~a~~~ 313 (572)
++.||.|-.- .-.|...|+..|+++|..-.. .++.-++||||.|.--. +...-.-+.+|.|+++..++.++..
T Consensus 42 ~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~i 121 (292)
T COG3129 42 YWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAI 121 (292)
T ss_pred EecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHH
Confidence 3456654211 124677889999988863211 23456799998876532 2222222788999998877766654
Q ss_pred HHHHcCCCcEE---EeccccC-CC---CCCCCeeEEEecccccc
Q 008262 314 FALERGAPAMV---AAFATRR-LP---YPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 314 ~A~~rg~~~~~---~~~d~e~-LP---fp~~sFDlI~ss~~l~h 350 (572)
.....++...+ ..-+... ++ -..+.||++.|+.-++.
T Consensus 122 i~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 122 ISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred HHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcch
Confidence 44432332211 1111111 11 12678999999976543
No 275
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=81.83 E-value=17 Score=39.34 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=62.8
Q ss_pred CCCCEEEEECCCCc----hhHHHhccC-------CeEEEeC----CccchHHH---HHHHHHHcCCCcEEEec---cccC
Q 008262 273 HHIRVVMDAGCGVA----SFGAYLLPR-------NVITMSI----APKDVHEN---QIQFALERGAPAMVAAF---ATRR 331 (572)
Q Consensus 273 ~~~~~VLDIGCGtG----~~a~~L~~~-------~V~gvDi----Sp~dl~~a---~~~~A~~rg~~~~~~~~---d~e~ 331 (572)
.+.-.|+|+|.|.| .+...|+.+ +||+++. +...+.+. -.++|+..|++..+... ..+.
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~ 188 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLED 188 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhh
Confidence 45567999999999 566677765 6999988 44334333 33677777887655542 2222
Q ss_pred C-----CCCCCCeeEEEeccccccccCC------hHHHHHHHHHhccCCeEEEEE
Q 008262 332 L-----PYPSQAFDLIHCSRCRINWTRD------DGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 332 L-----Pfp~~sFDlI~ss~~l~hw~~d------~~~~L~ei~RvLKPGG~lv~s 375 (572)
+ ...++..=+|-|...++|...+ +...+....|.|+|.-..+..
T Consensus 189 l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 189 LDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred CCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 2 2233444444455445555422 234566778899999666554
No 276
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=81.76 E-value=5.4 Score=42.63 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=58.3
Q ss_pred CCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-----CCCCC-CCeeEEE
Q 008262 275 IRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-----LPYPS-QAFDLIH 343 (572)
Q Consensus 275 ~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~-----LPfp~-~sFDlI~ 343 (572)
..+|+=+|||+ |.++..+++. .|+.+|.++. +.+.|++.+....+.....+. +.... ..||+|+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~-----Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE-----RLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH-----HHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 34899999996 7776555554 7888888765 446776643222222111110 11122 3699998
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
-... ...++.++.+++||||.+++...
T Consensus 244 e~~G-------~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 244 EAVG-------SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred ECCC-------CHHHHHHHHHHhcCCCEEEEEec
Confidence 4322 25689999999999999999874
No 277
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=81.34 E-value=4.8 Score=41.45 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=55.5
Q ss_pred CCCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----CCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----PYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-----Pfp~~sFDlI~ 343 (572)
....+||..|+| .|..+..++.. +|++++.++.. .+.+++.+....+...+ ... ....+.+|+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~-----~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEK-----LELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHH-----HHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEE
Confidence 345788888876 46666666654 67777666532 24455555433222111 010 12346799998
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.... ....+.++.+.|+++|.++...
T Consensus 238 d~~g-------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 238 DFVG-------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ECCC-------CHHHHHHHHHHhhcCCEEEEEC
Confidence 5321 1457889999999999998764
No 278
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=80.50 E-value=19 Score=37.18 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=62.7
Q ss_pred CCEEEEECCCCchhHHHhccC--------CeEEEeCCccchHHHHHHHHHHcC-CCcEEEecc----ccCCCCCCCCeeE
Q 008262 275 IRVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALERG-APAMVAAFA----TRRLPYPSQAFDL 341 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--------~V~gvDiSp~dl~~a~~~~A~~rg-~~~~~~~~d----~e~LPfp~~sFDl 341 (572)
..+.+|+|.|+-.=++.|++. ..+.+|++..-+.....+...+.. ++..-...+ ...+| ...--+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 678999999998666655543 688999999777666655555442 222111112 12233 222222
Q ss_pred -EEeccccccccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 342 -IHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 -I~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
++....+..+.++. ..+|.++...|+||-+|++-.
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 22233445554544 589999999999999999985
No 279
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=79.74 E-value=9.8 Score=39.01 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=55.8
Q ss_pred CCCEEEEECCCCchhHHHhcc---CCeEEEeCCccchH--HHH--HHHH-HHcCCCcEEEec--c-ccCCCCCCCC-eeE
Q 008262 274 HIRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVH--ENQ--IQFA-LERGAPAMVAAF--A-TRRLPYPSQA-FDL 341 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~---~~V~gvDiSp~dl~--~a~--~~~A-~~rg~~~~~~~~--d-~e~LPfp~~s-FDl 341 (572)
+..+||++|.|+|..+...+. .+|+..|+...... ... .+.+ ...|....+... + .....+-... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 456899999999954443332 26666666543221 110 0111 111212111111 1 1111111122 999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+++.|+.+- .....++.-+...|-.+|.+++.++
T Consensus 166 ilasDvvy~~-~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 166 ILASDVVYEE-ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEeeeeecC-CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 9999886554 5567888888888988997777763
No 280
>PRK11524 putative methyltransferase; Provisional
Probab=78.83 E-value=1.9 Score=44.67 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=30.3
Q ss_pred CCCCCeeEEEeccccc----------ccc-----CChHHHHHHHHHhccCCeEEEEEE
Q 008262 334 YPSQAFDLIHCSRCRI----------NWT-----RDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~----------hw~-----~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+++++||+|+++.-.. .|. .-....|.++.|+|||||.+++..
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 5678999999864321 010 001368899999999999999864
No 281
>PRK13699 putative methylase; Provisional
Probab=78.52 E-value=5.5 Score=40.12 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=29.2
Q ss_pred CCCCCeeEEEeccccc----c-----ccCC-----hHHHHHHHHHhccCCeEEEEE
Q 008262 334 YPSQAFDLIHCSRCRI----N-----WTRD-----DGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~----h-----w~~d-----~~~~L~ei~RvLKPGG~lv~s 375 (572)
++++++|+|+...-.. . +..+ ....+.|++|+|||||.+++-
T Consensus 16 lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 16 FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 6788899999774221 0 0001 147889999999999999865
No 282
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=78.27 E-value=4.5 Score=40.32 Aligned_cols=97 Identities=10% Similarity=0.059 Sum_probs=46.0
Q ss_pred CCCEEEEECCCCchhHHHhc--------cCCeEEEeCCccchHHHHHHHHHHc---CCCcEEEeccccCCC-------C-
Q 008262 274 HIRVVMDAGCGVASFGAYLL--------PRNVITMSIAPKDVHENQIQFALER---GAPAMVAAFATRRLP-------Y- 334 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~--------~~~V~gvDiSp~dl~~a~~~~A~~r---g~~~~~~~~d~e~LP-------f- 334 (572)
++..|+++|.-.|.-+..++ +.+|+|+|+........ +.+. .....+..++..+.. .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~----a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK----AIESHPMSPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-----GGGG----TTEEEEES-SSSTHHHHTSGSS-
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH----HHhhccccCceEEEECCCCCHHHHHHHHHhh
Confidence 45889999998885443332 23899999965433211 1111 012233333322211 1
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
....-.+|+-- + .|-..+.-..|+-...++++|+|+++.+
T Consensus 108 ~~~~~vlVilD-s-~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 108 SPPHPVLVILD-S-SHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp ---SSEEEEES-S-----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ccCCceEEEEC-C-CccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 12344566643 3 5665777788888999999999998864
No 283
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=77.79 E-value=3.6 Score=44.23 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=42.2
Q ss_pred hccCCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC------------CeEEEeCC
Q 008262 236 SKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR------------NVITMSIA 303 (572)
Q Consensus 236 ~~~g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~------------~V~gvDiS 303 (572)
..+||.++=|.-+..|.... ...+.+.+..+. ......+++||.|+|.++..++.. ++.-+++|
T Consensus 43 G~~GDFiTApels~lFGell---a~~~~~~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s 118 (370)
T COG1565 43 GRKGDFITAPELSQLFGELL---AEQFLQLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPS 118 (370)
T ss_pred cccCCeeechhHHHHHHHHH---HHHHHHHHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecC
Confidence 34566666666556663333 333444444321 223567999999999988877643 67888999
Q ss_pred ccc
Q 008262 304 PKD 306 (572)
Q Consensus 304 p~d 306 (572)
+..
T Consensus 119 ~~L 121 (370)
T COG1565 119 PEL 121 (370)
T ss_pred HHH
Confidence 863
No 284
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=76.68 E-value=26 Score=39.37 Aligned_cols=116 Identities=17% Similarity=0.198 Sum_probs=67.6
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHH----hcc----CCeEEEeCCccchHHHHHHHHHHcCCC--cEEE
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAY----LLP----RNVITMSIAPKDVHENQIQFALERGAP--AMVA 325 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~----L~~----~~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~ 325 (572)
....+-|.+++. .....+|+|--||+|.+... +.+ ..++|.++......-+...... +++. ....
T Consensus 172 ~~v~~liv~~l~----~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l-hgi~~~~~i~ 246 (489)
T COG0286 172 REVSELIVELLD----PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL-HGIEGDANIR 246 (489)
T ss_pred HHHHHHHHHHcC----CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH-hCCCcccccc
Confidence 445555666655 23456899999999965433 221 2478888877666444444433 2332 1222
Q ss_pred eccccCCC-C----CCCCeeEEEecccc--ccccCC-------------h---------HHHHHHHHHhccCCeEEEEEE
Q 008262 326 AFATRRLP-Y----PSQAFDLIHCSRCR--INWTRD-------------D---------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 326 ~~d~e~LP-f----p~~sFDlI~ss~~l--~hw~~d-------------~---------~~~L~ei~RvLKPGG~lv~st 376 (572)
..+.-.-| . ..+.||.|+++.-+ ..|..+ . ...++.+.+.|+|||...+..
T Consensus 247 ~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 247 HGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred ccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 22222222 2 34679999987643 223221 0 267899999999998766664
No 285
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=76.53 E-value=10 Score=36.37 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=57.3
Q ss_pred ECCCCchhHHHhccC-----CeEEEeCCccchH-------HHHHHHHHHcCCCcEEEeccccCCC----CCCCCeeEEEe
Q 008262 281 AGCGVASFGAYLLPR-----NVITMSIAPKDVH-------ENQIQFALERGAPAMVAAFATRRLP----YPSQAFDLIHC 344 (572)
Q Consensus 281 IGCGtG~~a~~L~~~-----~V~gvDiSp~dl~-------~a~~~~A~~rg~~~~~~~~d~e~LP----fp~~sFDlI~s 344 (572)
||=|.=+|+..|+.. ++++..+...+.- ...++..++.|....+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 566666788777765 5777665443211 11222334455554443 3555554 35688999997
Q ss_pred cccccccc-------CC------h-HHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWT-------RD------D-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~-------~d------~-~~~L~ei~RvLKPGG~lv~st 376 (572)
+.- |.. .+ . ..+|+.+.++|+++|.+.++-
T Consensus 82 NFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 82 NFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred eCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 653 322 01 1 278889999999999999995
No 286
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=76.52 E-value=9.3 Score=41.22 Aligned_cols=119 Identities=19% Similarity=0.269 Sum_probs=67.9
Q ss_pred HHHHHHHhccccc-cCCCCCEEEEECCCCchhHHHhccC--------CeEEEeCCccchHHHHHHHHHHcCCCc-EEEec
Q 008262 258 YLDQIAKMVPDIT-WGHHIRVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALERGAPA-MVAAF 327 (572)
Q Consensus 258 ~i~~L~~~L~~i~-~~~~~~~VLDIGCGtG~~a~~L~~~--------~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~ 327 (572)
+..+.+.+++-+. ...+..+|||+-+..|+=+.+|++. .|++-|+++.-+..-..+. .....+. .+...
T Consensus 138 ~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~-~~l~~~~~~v~~~ 216 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL-KRLPSPNLLVTNH 216 (375)
T ss_pred hhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH-hccCCcceeeecc
Confidence 3455566665332 2367889999999999877666653 4777788775443322222 1111111 11111
Q ss_pred cccCC---------CCCCCCeeEEEecc-cccc-------------ccCCh--------HHHHHHHHHhccCCeEEEEEE
Q 008262 328 ATRRL---------PYPSQAFDLIHCSR-CRIN-------------WTRDD--------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 328 d~e~L---------Pfp~~sFDlI~ss~-~l~h-------------w~~d~--------~~~L~ei~RvLKPGG~lv~st 376 (572)
+.... +.....||-|.|-- |... |...- -.+|....|+||+||.++.||
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 217 DASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred cceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 22111 23345799998742 1110 11110 167888999999999999998
Q ss_pred C
Q 008262 377 Q 377 (572)
Q Consensus 377 ~ 377 (572)
-
T Consensus 297 C 297 (375)
T KOG2198|consen 297 C 297 (375)
T ss_pred c
Confidence 3
No 287
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=75.75 E-value=3.7 Score=47.75 Aligned_cols=7 Identities=43% Similarity=0.762 Sum_probs=3.7
Q ss_pred eeecccc
Q 008262 521 NVLDMRA 527 (572)
Q Consensus 521 nvmdm~a 527 (572)
-++||||
T Consensus 1029 alIdm~a 1035 (1102)
T KOG1924|consen 1029 ALIDMNA 1035 (1102)
T ss_pred HHhcccc
Confidence 4555555
No 288
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=75.72 E-value=8.8 Score=40.37 Aligned_cols=102 Identities=16% Similarity=0.088 Sum_probs=59.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc-----CCCcEEEeccc-cCCC-CCCCCeeE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-----GAPAMVAAFAT-RRLP-YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r-----g~~~~~~~~d~-e~LP-fp~~sFDl 341 (572)
.+.+++|-||-|-|.+.+....+ +++-+|+.. ++.+...++-... +....+..+|. .-+. ...+.||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~-~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDE-NVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhH-HHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 46789999999999888777665 555555554 2323222322111 11222222231 1111 33689999
Q ss_pred EEeccccccccCCh----HHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDD----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~----~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.-.. ....+-. ..++..+.+.||+||+++...
T Consensus 199 ii~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 996421 1111111 367888999999999999885
No 289
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=74.08 E-value=5.5 Score=40.42 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=24.5
Q ss_pred CCEEEEECCCCchhHHHhccC------------CeEEEeCCccch
Q 008262 275 IRVVMDAGCGVASFGAYLLPR------------NVITMSIAPKDV 307 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~------------~V~gvDiSp~dl 307 (572)
.-+|+|+|.|+|.++..+++. +++-++.|+.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~ 63 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR 63 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH
Confidence 468999999999988776542 588999999764
No 290
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=72.71 E-value=47 Score=33.99 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=51.9
Q ss_pred CCCEEEEECCCCc-hhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCCCC-CCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVA-SFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRLPY-PSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG-~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~-e~LPf-p~~sFDlI~ss~~l 348 (572)
.+++||-+|=.-- +++..|... +|+.+|+....+. .-.+.|.+.|++......|. ..||- -.++||++++...
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~-fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLD-FINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHH-HHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHH-HHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 5689999996654 455555443 8999999997663 33467777787754444443 33442 1479999997643
Q ss_pred ccccCC-hHHHHHHHHHhccCCe-EEEEE
Q 008262 349 INWTRD-DGILLLEVNRMLRAGG-YFAWA 375 (572)
Q Consensus 349 ~hw~~d-~~~~L~ei~RvLKPGG-~lv~s 375 (572)
+..+ ...++......||.-| ..+++
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 2122 2478888999998666 44444
No 291
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=69.85 E-value=12 Score=39.52 Aligned_cols=84 Identities=11% Similarity=0.096 Sum_probs=51.1
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL- 332 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L- 332 (572)
+++++.+.+. ..++..++|.=||.|..+..+++. .|+|+|.++..+..+...... .+-...+...+...+
T Consensus 8 ll~Evl~~L~----~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~-~~~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 8 LLDEVVEGLN----IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD-FEGRVVLIHDNFANFF 82 (305)
T ss_pred hHHHHHHhcC----cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh-cCCcEEEEeCCHHHHH
Confidence 4556666665 245678999999999988888764 699999999877555433321 111222222222221
Q ss_pred ---C-CCCCCeeEEEecc
Q 008262 333 ---P-YPSQAFDLIHCSR 346 (572)
Q Consensus 333 ---P-fp~~sFDlI~ss~ 346 (572)
. ...+++|.|+...
T Consensus 83 ~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 83 EHLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHHhcCCCcccEEEEec
Confidence 1 1335788888654
No 292
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=69.40 E-value=22 Score=37.32 Aligned_cols=88 Identities=22% Similarity=0.131 Sum_probs=54.0
Q ss_pred CCCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.++.+||-.|+| .|.++..+++. +|++++.++. ..+.+++.|....+. .... ..+.+|+++-...
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~-----~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~~- 232 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAA-----ARRLALALGAASAGG---AYDT--PPEPLDAAILFAP- 232 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChH-----HHHHHHHhCCceecc---cccc--CcccceEEEECCC-
Confidence 456889999975 34444555443 6777766653 346777776543221 1111 1245887653211
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. ...+.+..++|++||.+++...
T Consensus 233 -----~-~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 -----A-GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -----c-HHHHHHHHHhhCCCcEEEEEec
Confidence 1 3478889999999999988753
No 293
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.60 E-value=24 Score=37.62 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=58.2
Q ss_pred CCCCEEEEECCCC-chhHHHhcc----CCeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc---CC------CCCCCC
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATR---RL------PYPSQA 338 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~----~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e---~L------Pfp~~s 338 (572)
+.+.+||-+|+|. |.++...++ .+|+.+|+++. +++.|++.|........... .+ -+....
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~-----Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVAN-----RLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHH-----HHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccC
Confidence 4678999999995 444433333 38999988875 44777776655433322111 10 122345
Q ss_pred eeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 339 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 339 FDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
||..+... -....++-....||.||.+++..
T Consensus 243 ~d~~~dCs-------G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 243 PDVTFDCS-------GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CCeEEEcc-------CchHHHHHHHHHhccCCEEEEec
Confidence 88888532 22456777788999999988884
No 294
>PRK10742 putative methyltransferase; Provisional
Probab=67.19 E-value=14 Score=38.01 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=27.3
Q ss_pred EEEEECCCCchhHHHhccC--CeEEEeCCccch
Q 008262 277 VVMDAGCGVASFGAYLLPR--NVITMSIAPKDV 307 (572)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl 307 (572)
+|||+=+|+|..+..++.+ .|+++|-++...
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~va 123 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVA 123 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHH
Confidence 8999999999999888876 799999988643
No 295
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=65.94 E-value=22 Score=37.48 Aligned_cols=93 Identities=20% Similarity=0.145 Sum_probs=55.4
Q ss_pred CCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC--CCCCCCeeEEEeccc
Q 008262 274 HIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL--PYPSQAFDLIHCSRC 347 (572)
Q Consensus 274 ~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L--Pfp~~sFDlI~ss~~ 347 (572)
++.+||-+|||. |.++.++++. +|++++.+. ......+.+++.|... + ....+.+ ....+.||+|+-...
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~--~~~~~~~~~~~~Ga~~-v-~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRD--PPDPKADIVEELGATY-V-NSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCC--CCHHHHHHHHHcCCEE-e-cCCccchhhhhhcCCCCEEEECcC
Confidence 457899999873 5666666554 677776532 1223446666666532 1 1111110 001246899985421
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
....+.+..++|++||.+++...
T Consensus 248 -------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 -------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred -------CHHHHHHHHHHccCCcEEEEEec
Confidence 13478889999999999987753
No 296
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=65.70 E-value=18 Score=35.44 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=53.3
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----CCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----PYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-----Pfp~~sFDlI~ 343 (572)
.+..+||.+|+|. |..+..++.. +|++++.++.. .+.+++.+....+...+ ... ....+.+|+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~-----~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEK-----LELAKELGADHVIDYKE-EDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHH-----HHHHHHhCCceeccCCc-CCHHHHHHHhcCCCCCEEE
Confidence 4567899999985 5555555543 78888766532 23444444322111110 000 11235799998
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.... . ...+..+.+.|+++|.++...
T Consensus 207 ~~~~------~-~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 207 DAVG------G-PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred ECCC------C-HHHHHHHHHhcccCCEEEEEc
Confidence 6422 1 146777889999999998774
No 297
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=65.69 E-value=7.4 Score=42.20 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=34.7
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccch
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDV 307 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl 307 (572)
+++|.+++..+..-.....|+|+|.|.|.+++.|.-. .|.++|-+....
T Consensus 138 i~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~ 189 (476)
T KOG2651|consen 138 IRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLV 189 (476)
T ss_pred HHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHH
Confidence 4555555543322245678999999999999988755 899999885433
No 298
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=64.60 E-value=8.7 Score=33.99 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=51.9
Q ss_pred CCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC----C-C-CCCCCeeEEEeccccccccCC
Q 008262 284 GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----L-P-YPSQAFDLIHCSRCRINWTRD 354 (572)
Q Consensus 284 GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~----L-P-fp~~sFDlI~ss~~l~hw~~d 354 (572)
|.|.++..++.. +|+++|.++. ..+.+++.|....+. ..... + . ...+.+|+|+-.. .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~-----k~~~~~~~Ga~~~~~-~~~~~~~~~i~~~~~~~~~d~vid~~-------g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEE-----KLELAKELGADHVID-YSDDDFVEQIRELTGGRGVDVVIDCV-------G 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHH-----HHHHHHHTTESEEEE-TTTSSHHHHHHHHTTTSSEEEEEESS-------S
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHH-----HHHHHHhhccccccc-ccccccccccccccccccceEEEEec-------C
Confidence 356666666544 7889887653 447777777433322 11111 1 1 2335799998531 1
Q ss_pred hHHHHHHHHHhccCCeEEEEEEC
Q 008262 355 DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 355 ~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
-...+.+...+|++||.+++...
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESS
T ss_pred cHHHHHHHHHHhccCCEEEEEEc
Confidence 26789999999999999999964
No 299
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=64.44 E-value=11 Score=42.49 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=56.3
Q ss_pred CCCEEEEECCCCc-hhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc-------------cC-----
Q 008262 274 HIRVVMDAGCGVA-SFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-------------RR----- 331 (572)
Q Consensus 274 ~~~~VLDIGCGtG-~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~-------------e~----- 331 (572)
+..+||=+|||.- ..+..++.. .|+++|..+.. .+.++..+.......... ++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~r-----le~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEV-----KEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHH-----HHHHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 4689999999964 554444433 68888877642 344544443221111000 00
Q ss_pred ---CCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEE
Q 008262 332 ---LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 332 ---LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv 373 (572)
++-.-..+|+|++. +++.-.+.+.-+.+++.+.+|||+.++
T Consensus 238 ~~~~~e~~~~~DIVI~T-alipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 238 MELFAAQAKEVDIIITT-ALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHhCCCCEEEEC-cccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 11112469999976 445544455568889999999999987
No 300
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=63.88 E-value=28 Score=35.83 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=52.5
Q ss_pred CCCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
....+||-+||| .|..+..++.. +|++++.+.. ..+.+.+.+....+.........-..+.+|+++....
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~- 234 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPD-----KRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV- 234 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC-
Confidence 455788889986 56555555544 6777765543 2344444453322211110000001246899885311
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
....+.++.+.|+++|.++...
T Consensus 235 ------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 ------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ------cHHHHHHHHHhcccCCEEEEEC
Confidence 1346788899999999998764
No 301
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=63.57 E-value=20 Score=38.13 Aligned_cols=92 Identities=13% Similarity=0.076 Sum_probs=51.3
Q ss_pred CCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
+..+||-.|+| .|.++..+++. +|++++.+.... .+.+++.|....+...+.+.+.-..+.+|+|+-. +
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~----~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~-~-- 255 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKE----DEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDT-V-- 255 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchh----hhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEEC-C--
Confidence 45788889986 35565555544 677776654321 2334445543222111111111001248988843 2
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. ....+.++.+.|++||.++...
T Consensus 256 ---g-~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 256 ---S-AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred ---C-CHHHHHHHHHHhcCCcEEEEeC
Confidence 1 1347888999999999998764
No 302
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=63.07 E-value=26 Score=36.87 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=52.2
Q ss_pred CCCCEEEEECCCC-chhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.+..+||-+|||. |.++..++. .+|+++|.++. ..+.+++.+.. ... +.+. ....+|+|+-.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~-----k~~~a~~~~~~--~~~---~~~~-~~~g~d~viD~- 229 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQE-----KLDLFSFADET--YLI---DDIP-EDLAVDHAFEC- 229 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHh-----HHHHHhhcCce--eeh---hhhh-hccCCcEEEEC-
Confidence 3568899999874 555544332 26888887653 23444432211 111 1111 11248999843
Q ss_pred ccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+ -. ......+.+..++|++||.+++...
T Consensus 230 ~-G~--~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 230 V-GG--RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred C-CC--CccHHHHHHHHHhCcCCcEEEEEee
Confidence 2 11 1124678899999999999988753
No 303
>KOG2730 consensus Methylase [General function prediction only]
Probab=62.71 E-value=8.6 Score=38.88 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccch
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDV 307 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl 307 (572)
.+.....++..+... -....|+|.-||.|.-+..++.+ .|+++|++|.-+
T Consensus 78 pe~ia~~iA~~v~~~---~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikI 129 (263)
T KOG2730|consen 78 PEKIAEHIANRVVAC---MNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKI 129 (263)
T ss_pred cHHHHHHHHHHHHHh---cCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHH
Confidence 345555666555432 14567999999998777766655 899999998644
No 304
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=62.39 E-value=7.5 Score=45.37 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=6.1
Q ss_pred eCCccchHHHHHHH
Q 008262 301 SIAPKDVHENQIQF 314 (572)
Q Consensus 301 DiSp~dl~~a~~~~ 314 (572)
+.....+++..+|.
T Consensus 724 evne~vLse~~iqn 737 (1102)
T KOG1924|consen 724 EVNEDVLSESMIQN 737 (1102)
T ss_pred hccHHHHHHHHHHH
Confidence 34444444444443
No 305
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=61.73 E-value=29 Score=35.91 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=51.6
Q ss_pred CCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc--ccCCCCCCCCeeEEEecc
Q 008262 274 HIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFA--TRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 274 ~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d--~e~LPfp~~sFDlI~ss~ 346 (572)
+..+||..|||. |..+..++.. .+++++.++.. .+.+++.+....+...+ ...+....+.+|+|+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~-----~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAP-----LAVARAMGADETVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHH-----HHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECC
Confidence 567888898874 5555555543 46677655432 23444444422221110 111221224599998542
Q ss_pred ccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. ....+.++.+.|+++|.++...
T Consensus 240 g-------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 240 G-------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C-------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1 1346888999999999998764
No 306
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=61.62 E-value=24 Score=35.94 Aligned_cols=91 Identities=20% Similarity=0.175 Sum_probs=53.6
Q ss_pred CCCEEEEECCCC-chhHHHhccC---C-eEEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCC-CC-CCCCeeEEEec
Q 008262 274 HIRVVMDAGCGV-ASFGAYLLPR---N-VITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRL-PY-PSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGt-G~~a~~L~~~---~-V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~-e~L-Pf-p~~sFDlI~ss 345 (572)
+..+||=+|+|. |.++..+++. . |+++|.++. ..+.+++.|....+...+. +.+ .. ....+|+|+-.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~-----r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~ 194 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD-----RRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEF 194 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEEC
Confidence 567899998863 4555555543 4 777766543 3456666665332211100 000 01 22458998853
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.. ....+.++.+.|+++|.+++..
T Consensus 195 ~G-------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 195 SG-------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CC-------ChHHHHHHHHHhcCCCEEEEec
Confidence 11 1457888999999999999875
No 307
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=61.18 E-value=30 Score=38.10 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=52.8
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
..+++|+=+|||. |.....++.. +|+.+|.++.- ...|...|... ... .+.+ ..+|+|+...
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R-----~~~A~~~G~~~--~~~-~e~v----~~aDVVI~at-- 265 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPIC-----ALQAAMEGYEV--MTM-EEAV----KEGDIFVTTT-- 265 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhh-----HHHHHhcCCEE--ccH-HHHH----cCCCEEEECC--
Confidence 3568999999996 5444444332 78888887643 24555555421 111 1111 3579998642
Q ss_pred ccccCChHHHHHH-HHHhccCCeEEEEEEC
Q 008262 349 INWTRDDGILLLE-VNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~~~~L~e-i~RvLKPGG~lv~st~ 377 (572)
.. ..++.+ ..+.+|+||.++....
T Consensus 266 ----G~-~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 266 ----GN-KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ----CC-HHHHHHHHHhcCCCCcEEEEeCC
Confidence 12 345554 5899999999988864
No 308
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=61.03 E-value=38 Score=35.01 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=54.3
Q ss_pred CCCCEEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----CCCCCCeeEE
Q 008262 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----PYPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-----Pfp~~sFDlI 342 (572)
.++.+||=.|. |.|.++..+++. +|++++-++. ..+++++.|....+...+...+ ....+.+|+|
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~-----~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv 211 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDE-----KVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCY 211 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEE
Confidence 45678998884 467777777665 5776655442 3456666665332221110111 0123469999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+-... ...+.++.++|++||.++...
T Consensus 212 ~d~~G--------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 212 FDNVG--------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EECCC--------HHHHHHHHHHhCcCcEEEEec
Confidence 85311 235688899999999998764
No 309
>PTZ00357 methyltransferase; Provisional
Probab=60.62 E-value=34 Score=40.00 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=56.6
Q ss_pred CEEEEECCCCchhHHHhccC--------CeEEEeCCccchHHHHHHHHHHcCC---------CcEEEeccccCCCCC---
Q 008262 276 RVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALERGA---------PAMVAAFATRRLPYP--- 335 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--------~V~gvDiSp~dl~~a~~~~A~~rg~---------~~~~~~~d~e~LPfp--- 335 (572)
..|+-+|+|-|-+-...++. +|++|+-++........+....... ...++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 35899999999655443322 6888888754322222222111111 234444566665432
Q ss_pred --------CCCeeEEEeccccccccCCh--HHHHHHHHHhccC----CeE
Q 008262 336 --------SQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRA----GGY 371 (572)
Q Consensus 336 --------~~sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKP----GG~ 371 (572)
-+.+|+|+|- .+-.+.++. +..|.-+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 2369999964 445554443 5889999999987 776
No 310
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=60.16 E-value=21 Score=38.86 Aligned_cols=96 Identities=20% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCEEEEECCCCchhHH-Hhcc----CCeEEEeCCccchHHHHHHHHHHcCCCc---EEEeccccCCC-CCCCCeeEEEec
Q 008262 275 IRVVMDAGCGVASFGA-YLLP----RNVITMSIAPKDVHENQIQFALERGAPA---MVAAFATRRLP-YPSQAFDLIHCS 345 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~-~L~~----~~V~gvDiSp~dl~~a~~~~A~~rg~~~---~~~~~d~e~LP-fp~~sFDlI~ss 345 (572)
.-+|||.=+|+|.=+. +..+ ..|+.-|+++..+.. ..+.+..+++.. .+...|+..+= ...+.||+|-..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~-i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVEL-IKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHH-HHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHH-HHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 3589999999995443 3333 278889999875533 333444455554 23333443332 246789999843
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. + ..+..+|..+.+.+|.||+|.++.
T Consensus 129 P----f-GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 P----F-GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----S-S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred C----C-CCccHhHHHHHHHhhcCCEEEEec
Confidence 2 2 445689999999999999999994
No 311
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=60.08 E-value=25 Score=36.43 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=49.1
Q ss_pred CCEEEEECCC-CchhHHHhccC---C-eEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 275 IRVVMDAGCG-VASFGAYLLPR---N-VITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 275 ~~~VLDIGCG-tG~~a~~L~~~---~-V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
..++|=+||| .|.++.+++.. + |+++|..+.. .+.+.... .. +.... ....||+|+-...
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~r-----l~~a~~~~----~i--~~~~~--~~~g~Dvvid~~G-- 209 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRR-----RDGATGYE----VL--DPEKD--PRRDYRAIYDASG-- 209 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHH-----HHhhhhcc----cc--Chhhc--cCCCCCEEEECCC--
Confidence 4578888987 46676666654 3 5566654432 23333221 11 11111 2346899985421
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
....+.++.+.|++||.+++...
T Consensus 210 -----~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 -----DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -----CHHHHHHHHHhhhcCcEEEEEee
Confidence 13567889999999999998753
No 312
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=60.01 E-value=20 Score=39.69 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=29.3
Q ss_pred CEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC
Q 008262 276 RVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA 320 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~ 320 (572)
..|||||.|||.++...... .|++++.-..|...+ .......|.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~a-rkI~~kng~ 114 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLA-RKIMHKNGM 114 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHH-HHHHhcCCC
Confidence 45899999999877554443 799998777676333 234444443
No 313
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=59.95 E-value=13 Score=35.85 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=30.5
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHh--ccCCeEEEeCCccch
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYL--LPRNVITMSIAPKDV 307 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L--~~~~V~gvDiSp~dl 307 (572)
...++++.+... .++..|||.=||+|+.+.+. +.++.+|+|+++.-.
T Consensus 178 ~~l~~~lI~~~t-----~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~ 226 (231)
T PF01555_consen 178 VELIERLIKAST-----NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYC 226 (231)
T ss_dssp HHHHHHHHHHHS------TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHH
T ss_pred HHHHHHHHHhhh-----ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHH
Confidence 355555555544 46789999999999766544 455899999988533
No 314
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=59.77 E-value=33 Score=36.20 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=54.3
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----C-CCCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----P-YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-----P-fp~~sFDl 341 (572)
.+..+||-.|||. |.++.++++. .|+++|.++. ..+++++.|....+... .+.. . .....+|+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~-----~~~~~~~~Ga~~~i~~~-~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR-----KLEWAREFGATHTVNSS-GTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH-----HHHHHHHcCCceEEcCC-CcCHHHHHHHHhCCCCCCE
Confidence 4568899999863 4555555543 3778876653 34666666653222111 1111 0 12235899
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+-. + - . ...+.+..+.|++||.+++...
T Consensus 249 vid~-~-g----~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 249 VIDA-V-G----R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEEC-C-C----C-HHHHHHHHHHhccCCEEEEECC
Confidence 9843 1 1 1 3467888899999999998753
No 315
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=59.45 E-value=27 Score=37.09 Aligned_cols=91 Identities=19% Similarity=0.091 Sum_probs=54.0
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----CCCCCCeeEE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----PYPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-----Pfp~~sFDlI 342 (572)
.+..+||=+|+|. |.++..+++. .|+++|.++. +.+.+++.|....+... .+.+ ....+.+|+|
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~-----r~~~a~~~Ga~~~i~~~-~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNED-----KLALARELGATATVNAG-DPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHH-----HHHHHHHcCCceEeCCC-chhHHHHHHHHhCCCCCEE
Confidence 3557888899863 5555555543 4788876653 34566666653322111 1111 0112368999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+-... ....+.++.+.|+++|.+++..
T Consensus 264 id~~G-------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 264 FEMAG-------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EECCC-------ChHHHHHHHHHHhcCCEEEEEc
Confidence 85311 1357788889999999998875
No 316
>PHA01634 hypothetical protein
Probab=58.65 E-value=25 Score=32.78 Aligned_cols=66 Identities=14% Similarity=0.054 Sum_probs=40.6
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEe--ccccCCCCCCCCeeEEEe
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAA--FATRRLPYPSQAFDLIHC 344 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~--~d~e~LPfp~~sFDlI~s 344 (572)
..++|+|||.+-|..+.+++-+ .|++++.++..... ..+..+.. .++. ....+++-.-+.||+...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~-~een~k~n----nI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKK-WEEVCAYF----NICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHH-HHHHhhhh----eeeeceeecccccccCCCcceEEE
Confidence 5689999999999888777654 79999988864422 22222211 1111 123445544567887763
No 317
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=58.64 E-value=13 Score=38.44 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=38.9
Q ss_pred EEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC--CCCeeEEEecc
Q 008262 277 VVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP--SQAFDLIHCSR 346 (572)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp--~~sFDlI~ss~ 346 (572)
+++|+-||.|.+..-+... .+.++|+.+... +..+.. .+..+...|+..+... ...+|+|+.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~-----~~~~~N-~~~~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA-----ETYEAN-FPNKLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHH-----HHHHHh-CCCCCccCccccCchhhcCCCCCEEEeCC
Confidence 5899999999887666654 577888887533 222222 1222233355544321 35699999765
No 318
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=58.49 E-value=46 Score=34.22 Aligned_cols=91 Identities=18% Similarity=0.119 Sum_probs=52.0
Q ss_pred CCCCEEEEECCC-CchhHHHhccC---C-eEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC----CCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR---N-VITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL----PYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~-V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L----Pfp~~sFDlI~ 343 (572)
.+..+||.+|+| .|..+..++.. + |++++-++. ..+.+.+.+... +........ ....+.+|+|+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~-----~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEE-----KLELAKKLGATE-TVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH-----HHHHHHHhCCeE-EecCCCCCHHHHHHhcCCCCcEEE
Confidence 356789999865 24454444443 4 666655543 234445555432 221111110 11345699999
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.... ....+.++.+.|+++|.++...
T Consensus 232 ~~~~-------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 232 EATG-------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred ECCC-------ChHHHHHHHHHHhcCCEEEEEe
Confidence 6421 1457888899999999998764
No 319
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=57.76 E-value=38 Score=35.85 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=54.4
Q ss_pred CCCCEEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHHH-HcCCCcEEEeccccCC-----CCCCCCeeE
Q 008262 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFAL-ERGAPAMVAAFATRRL-----PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~-~rg~~~~~~~~d~e~L-----Pfp~~sFDl 341 (572)
.++.+||=.|+ |.|.++.++++. +|++++.++. ..+.++ +.|....+...+...+ ....+.+|+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~-----k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQ-----KVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHH-----HHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEE
Confidence 45688999998 367777777665 5777765543 234444 4554332221100011 011246899
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.... ...+.++.++|++||.+++..
T Consensus 232 v~d~vG--------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 232 YFDNVG--------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEECCC--------HHHHHHHHHHhccCCEEEEEC
Confidence 985311 347788999999999998764
No 320
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=55.95 E-value=31 Score=37.39 Aligned_cols=97 Identities=25% Similarity=0.261 Sum_probs=62.7
Q ss_pred CCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC-CCCeeEEEeccccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP-SQAFDLIHCSRCRI 349 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp-~~sFDlI~ss~~l~ 349 (572)
..+|||-=+|||.=+...+.. .|+.-|++|....-...+.....+....+...|+..+-.. ...||+|=.-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD---- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID---- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC----
Confidence 578999999999766655543 5777799987664433333332233333333444333222 3678887532
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+ ..+.-++..+.+.+|.||++.++.
T Consensus 129 PF-GSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PF-GSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CC-CCCchHHHHHHHHhhcCCEEEEEe
Confidence 22 445688999999999999999983
No 321
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=55.12 E-value=39 Score=35.05 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=52.9
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---C-eEEEeCCccchHHHHHHHHHHcCCCcEEEeccc--cCC-CC-CCCCeeEEE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---N-VITMSIAPKDVHENQIQFALERGAPAMVAAFAT--RRL-PY-PSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~-V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~--e~L-Pf-p~~sFDlI~ 343 (572)
.++.+||=+|+|. |.++..+++. + |++++.++. +.+.+++.|....+...+. +.+ .. ....+|+|+
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~-----~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vi 236 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE-----RLELAKALGADFVINSGQDDVQEIRELTSGAGADVAI 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEE
Confidence 3467888888752 4454455443 5 888766543 3456666665332211110 011 01 224699998
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
-... ....+.+..+.|+++|.+++..
T Consensus 237 d~~g-------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 237 ECSG-------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred ECCC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 5311 1345678889999999998765
No 322
>PRK11524 putative methyltransferase; Provisional
Probab=54.96 E-value=33 Score=35.55 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=33.5
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHH--HhccCCeEEEeCCccch
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGA--YLLPRNVITMSIAPKDV 307 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~--~L~~~~V~gvDiSp~dl 307 (572)
...++++.+... .++..|||-=||+|+.+. ..+.++.+|+|+++.-.
T Consensus 195 ~~L~erlI~~~S-----~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~ 243 (284)
T PRK11524 195 EALLKRIILASS-----NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYI 243 (284)
T ss_pred HHHHHHHHHHhC-----CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHH
Confidence 345555554443 567899999999997554 44556999999998544
No 323
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=54.58 E-value=31 Score=40.11 Aligned_cols=39 Identities=18% Similarity=0.047 Sum_probs=27.3
Q ss_pred CCeeEEEeccccccccCCh--HHHHHHHHHhccCCeEEEEE
Q 008262 337 QAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~s 375 (572)
..||+++.-...-.-.++. ..+|.++.|+++|||.|.-.
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 5699999754322221222 58999999999999999743
No 324
>PRK13699 putative methylase; Provisional
Probab=53.26 E-value=34 Score=34.44 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=32.5
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHh--ccCCeEEEeCCccchH
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYL--LPRNVITMSIAPKDVH 308 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L--~~~~V~gvDiSp~dl~ 308 (572)
..++.+.+... .++..|||-=||+|+.+... ..++.+|+|+++.-..
T Consensus 151 ~l~~~~i~~~s-----~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~ 199 (227)
T PRK13699 151 TSLQPLIESFT-----HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHR 199 (227)
T ss_pred HHHHHHHHHhC-----CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHH
Confidence 34444444433 46789999999999766544 3458999999986443
No 325
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.85 E-value=99 Score=29.64 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=35.7
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHH
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQ 311 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~ 311 (572)
.+.++.++.+++ +.+..+.+|+|.|.|..-...+.. .-+|+++.+..+..+.
T Consensus 58 teQv~nVLSll~----~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysr 112 (199)
T KOG4058|consen 58 TEQVENVLSLLR----GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSR 112 (199)
T ss_pred HHHHHHHHHHcc----CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHH
Confidence 344555566665 456678999999999765444443 6789999997664443
No 326
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=52.28 E-value=17 Score=38.29 Aligned_cols=117 Identities=16% Similarity=0.150 Sum_probs=67.1
Q ss_pred eeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHH-HhccC---CeEEEeCCccchHHHHHHHHHH
Q 008262 242 FKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGA-YLLPR---NVITMSIAPKDVHENQIQFALE 317 (572)
Q Consensus 242 ~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~-~L~~~---~V~gvDiSp~dl~~a~~~~A~~ 317 (572)
+.|.---+||..|...-..+++.+-. .+..|.|+=+|-|+|+. .+... .|.++|..|-.+ ++..+.++.
T Consensus 168 ~~~d~t~~MFS~GN~~EK~Rv~~~sc------~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv-EaLrR~~~~ 240 (351)
T KOG1227|consen 168 QIWDPTKTMFSRGNIKEKKRVLNTSC------DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV-EALRRNAEA 240 (351)
T ss_pred EEechhhhhhhcCcHHHHHHhhhccc------ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-HHHHHHHHh
Confidence 34444456776665444444444433 23789999999999987 44443 799999999655 333333333
Q ss_pred cCCCc--EEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeE
Q 008262 318 RGAPA--MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGY 371 (572)
Q Consensus 318 rg~~~--~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~ 371 (572)
.++.. .+.. ...+.+-++...|-|.... + +.-++-.--+..+|||.|-
T Consensus 241 N~V~~r~~i~~-gd~R~~~~~~~AdrVnLGL--l---PSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 241 NNVMDRCRITE-GDNRNPKPRLRADRVNLGL--L---PSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred cchHHHHHhhh-ccccccCccccchheeecc--c---cccccchHHHHHHhhhcCC
Confidence 32211 1111 2355565677788777432 1 3333344456678887665
No 327
>PLN02740 Alcohol dehydrogenase-like
Probab=51.76 E-value=50 Score=35.31 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=53.9
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc-CC-----CCCCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR-RL-----PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e-~L-----Pfp~~sFDl 341 (572)
.+..+||=+|||. |.++..+++. .|+++|.++. ..+.+++.|....+...+.. .+ ....+.+|+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~-----r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dv 271 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE-----KFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDY 271 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH-----HHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCE
Confidence 4567899999863 4455555443 4788877653 34666666654332211100 01 011236999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCC-eEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAG-GYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPG-G~lv~st 376 (572)
|+-... ....+.+..+.+++| |.+++..
T Consensus 272 vid~~G-------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 272 SFECAG-------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred EEECCC-------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 985321 135778888899997 9888765
No 328
>PLN02827 Alcohol dehydrogenase-like
Probab=51.73 E-value=44 Score=35.83 Aligned_cols=92 Identities=14% Similarity=0.039 Sum_probs=53.0
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cC----C-CCCCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RR----L-PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~-e~----L-Pfp~~sFDl 341 (572)
.++.+||-+|+|. |.++..+++. .|+++|.++. ..+++++.|....+...+. +. + ....+.+|+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~-----~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~ 266 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPE-----KAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADY 266 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH-----HHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCE
Confidence 4568899998753 4455555443 4677766543 3466666665332211110 00 0 011236899
Q ss_pred EEeccccccccCChHHHHHHHHHhccCC-eEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAG-GYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPG-G~lv~st 376 (572)
|+-... ....+.+..+.|++| |.+++..
T Consensus 267 vid~~G-------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 267 SFECVG-------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred EEECCC-------ChHHHHHHHHhhccCCCEEEEEC
Confidence 985311 134678889999999 9998764
No 329
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=51.50 E-value=81 Score=32.95 Aligned_cols=84 Identities=13% Similarity=0.120 Sum_probs=51.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.++....|+|.-.|.|+..|.++ .|+++|-.+ |. +.....|... .+..|.....-.....|-.+|..+
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~-ma-----~sL~dtg~v~-h~r~DGfk~~P~r~~idWmVCDmV--- 279 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP-MA-----QSLMDTGQVT-HLREDGFKFRPTRSNIDWMVCDMV--- 279 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceEEEEeccch-hh-----hhhhccccee-eeeccCcccccCCCCCceEEeehh---
Confidence 46788999999999999999988 789998765 22 2222233222 222222222113467899998754
Q ss_pred ccCChHHHHHHHHHhccC
Q 008262 351 WTRDDGILLLEVNRMLRA 368 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKP 368 (572)
+.+..+-.-|..-|..
T Consensus 280 --EkP~rv~~li~~Wl~n 295 (358)
T COG2933 280 --EKPARVAALIAKWLVN 295 (358)
T ss_pred --cCcHHHHHHHHHHHHc
Confidence 4555554445555543
No 330
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=51.41 E-value=47 Score=34.91 Aligned_cols=93 Identities=14% Similarity=0.185 Sum_probs=52.2
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc--cCC----C-C-CCCCee
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT--RRL----P-Y-PSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~--e~L----P-f-p~~sFD 340 (572)
.+..+||-+|||. |..+..++.. +|+++|.++. ..+++++.|....+...+. +.+ . + ....+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~-----~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d 239 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE-----KLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLR 239 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH-----HHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCC
Confidence 4568899999864 5555555543 6788877654 3356666664332211110 000 0 1 112344
Q ss_pred ----EEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 341 ----LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 341 ----lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+|+-. + -....+..+.++|++||.+++...
T Consensus 240 ~~~d~v~d~-~------g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 240 STGWKIFEC-S------GSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred CCcCEEEEC-C------CChHHHHHHHHHHhcCCeEEEECc
Confidence 55521 1 113567778899999999988753
No 331
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=50.59 E-value=60 Score=32.42 Aligned_cols=90 Identities=20% Similarity=0.130 Sum_probs=51.4
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---C-eEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---N-VITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~-V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
.+..+||-.|||. |..+..++.. + |++++.++.. .+.+++.+....+... .+.+ .....+|+|+....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~-----~~~~~~~g~~~~~~~~-~~~~-~~~~~~d~vl~~~~ 168 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAAR-----RELAEALGPADPVAAD-TADE-IGGRGADVVIEASG 168 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHH-----HHHHHHcCCCcccccc-chhh-hcCCCCCEEEEccC
Confidence 4567888888764 4454444443 5 8887665432 3455555511111111 1111 12356899985311
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
....+.+..+.|+++|.++...
T Consensus 169 -------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 -------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred -------ChHHHHHHHHHhcCCcEEEEEe
Confidence 1346788899999999998764
No 332
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=49.71 E-value=41 Score=35.73 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.7
Q ss_pred HHHHHHHHHhccCCeEEEEEECCCC
Q 008262 356 GILLLEVNRMLRAGGYFAWAAQPVY 380 (572)
Q Consensus 356 ~~~L~ei~RvLKPGG~lv~st~P~~ 380 (572)
.++|..+..+++||-+|++.+-|+.
T Consensus 222 t~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 222 TKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred HHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 3889999999999999999976554
No 333
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=47.73 E-value=49 Score=35.54 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=51.9
Q ss_pred CCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
+..+||-.||| .|.++..+++. +|++++.+.. ...+.+++.|....+...+.+.+.-..+.+|+|+-. +
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~----~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~-~-- 250 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSE----KEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDT-V-- 250 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChH----HhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEEC-C--
Confidence 46788888886 35555555544 6777766542 123455555543222111101110001248988853 1
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.....+.++.+.|++||.++....
T Consensus 251 ----G~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 251 ----SAEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred ----CcHHHHHHHHHhhcCCCEEEEEcc
Confidence 113467888999999999987753
No 334
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=46.75 E-value=3.4e+02 Score=27.82 Aligned_cols=102 Identities=17% Similarity=0.114 Sum_probs=58.5
Q ss_pred CCEEEEECCCCchhHHHhccC-CeEEEeCCccchHHHHHHHHHHcCC----CcEEEecccc-CC-------CCCCCCeeE
Q 008262 275 IRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGA----PAMVAAFATR-RL-------PYPSQAFDL 341 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~----~~~~~~~d~e-~L-------Pfp~~sFDl 341 (572)
...|+.+|||-=.-+..|... ++.-+|+...++.+.+.+...+.+. ...+...|.. .+ .|..+.-=+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 457999999988777776543 4556666655554444444443221 1122223332 11 122223346
Q ss_pred EEeccccccccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
+++-.++..+.++. ..+|..+.+...||+.+++..
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 66555544443322 478888888888999999985
No 335
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=46.32 E-value=17 Score=40.40 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=27.4
Q ss_pred ccccccccCCCchhhhcccCCCCC--C----ccccccc---cccccCCCCCCCcccccCC
Q 008262 114 SDDFEIGEYDPDLVETEWNGDRNG--T----EATKSFK---ITRYEMCPGSMREYIPCLD 164 (572)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~---~~~~~~c~~~~~~y~pC~d 164 (572)
+|.-.++.+..-.+-.|.++.-.- . .++.+++ ..-|++=.-+|+-||=|.-
T Consensus 50 ~d~I~v~~l~~q~~~yiEdE~~~~~~i~a~w~snn~~~A~p~f~~Pvp~G~~sV~isceG 109 (465)
T PF01690_consen 50 DDSISVRSLNSQRMRYIEDENWNWVNIDAGWYSNNSVKAIPMFVFPVPKGKWSVEISCEG 109 (465)
T ss_pred ccceEeeccCceeEEEEecccceeEEecceeEecCcceeeeEEEEecCCceEEEEEEecc
Confidence 455566666665555555554421 0 1122222 2236666677888888863
No 336
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=45.85 E-value=79 Score=32.33 Aligned_cols=90 Identities=18% Similarity=0.100 Sum_probs=53.4
Q ss_pred CCCCEEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----CCCCCCeeEE
Q 008262 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----PYPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-----Pfp~~sFDlI 342 (572)
.++.+||=.|. |.|.++..++.. +|++++-++. ..+++++.|....+.. ..+.+ ....+.+|+|
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~-----~~~~l~~~Ga~~vi~~-~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDD-----KVAWLKELGFDAVFNY-KTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHcCCCEEEeC-CCccHHHHHHHHCCCCcEEE
Confidence 35678888884 456666666654 6776655442 3355555665332221 11111 1123569999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.... ...+.+..+.|+++|.++...
T Consensus 216 ld~~g--------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 216 FDNVG--------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EECCC--------HHHHHHHHHhhccCCEEEEEc
Confidence 85321 356788999999999998653
No 337
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=43.96 E-value=84 Score=32.66 Aligned_cols=91 Identities=14% Similarity=0.084 Sum_probs=53.1
Q ss_pred CCCCEEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHHHH-cCCCcEEEeccccCC-----CCCCCCeeE
Q 008262 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALE-RGAPAMVAAFATRRL-----PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~-rg~~~~~~~~d~e~L-----Pfp~~sFDl 341 (572)
.++.+||=.|+ |.|.++..++.. +|++++-++. ..+.+++ .|....+...+...+ ....+.+|+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~-----~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~ 224 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDE-----KVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDI 224 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEE
Confidence 45688999986 456666666654 5666654432 3345544 554332221100010 011256899
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+-... ...+.++.+.|+++|.++...
T Consensus 225 v~d~~g--------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 225 YFDNVG--------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEECCC--------HHHHHHHHHHhccCcEEEEec
Confidence 985311 356788999999999998764
No 338
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=43.90 E-value=2.4e+02 Score=27.02 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=54.0
Q ss_pred CCCEEEEECCCCchhHHHh---ccCCeEEEeCCccchHHHHHHHHHHcCCCcEEEecc---ccCCC-CCCCCeeEEEecc
Q 008262 274 HIRVVMDAGCGVASFGAYL---LPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFA---TRRLP-YPSQAFDLIHCSR 346 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L---~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d---~e~LP-fp~~sFDlI~ss~ 346 (572)
...+|+-|||=+-.....- ...+++-.|+.. +++. .+.. .+...| .+.+| .-.++||+|++-.
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~--------RF~~-~~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DP 94 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR--------RFEQ-FGGD-EFVFYDYNEPEELPEELKGKFDVVVIDP 94 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc--------hHHh-cCCc-ceEECCCCChhhhhhhcCCCceEEEECC
Confidence 4578999999887655443 122777788775 3444 2222 122222 23344 1157999999876
Q ss_pred ccccccCChH-HHHHHHHHhccCCeEEEEEE
Q 008262 347 CRINWTRDDG-ILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 347 ~l~hw~~d~~-~~L~ei~RvLKPGG~lv~st 376 (572)
-+ +..+.. .+..-+.-++|+++.+++.+
T Consensus 95 PF--l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 95 PF--LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred CC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 54 323332 44455555668889998886
No 339
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=43.74 E-value=80 Score=32.94 Aligned_cols=93 Identities=14% Similarity=0.109 Sum_probs=51.4
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---C-eEEEeCCccchHHHHHHHHHHcCCCcEEEeccc--cCC-C-CCCCCee-EE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---N-VITMSIAPKDVHENQIQFALERGAPAMVAAFAT--RRL-P-YPSQAFD-LI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~-V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~--e~L-P-fp~~sFD-lI 342 (572)
.+..+||=+|||. |.++..+++. + |++++.++. ..+.+++.|....+..... +.+ . .....+| +|
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~-----~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v 233 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSE-----KLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLI 233 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH-----HHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEE
Confidence 3567899898863 4455555443 4 567766543 3345555554322211100 000 0 1223577 66
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+-. + -....+.+..+.|++||.+++...
T Consensus 234 ~d~-~------G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 234 LET-A------GVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred EEC-C------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 532 1 114578889999999999998753
No 340
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=42.52 E-value=22 Score=39.80 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=59.8
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEe--ccc----cCCCCCCCCeeEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAA--FAT----RRLPYPSQAFDLI 342 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~--~d~----e~LPfp~~sFDlI 342 (572)
+.-+|||.=|++|.-+...+.. +|++-|+++..+...+. .++..+....+.. .|+ ...+-....||+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~-Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQR-NVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHh-hhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 4567999999999665555443 67888887765532221 2222222221111 121 2223346789999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
... .+ ..+..+|..+.+.++.||+|.++.
T Consensus 188 DLD----Py-Gs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 DLD----PY-GSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ecC----CC-CCccHHHHHHHHHhhcCCEEEEEe
Confidence 843 23 344689999999999999999984
No 341
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=41.84 E-value=81 Score=27.77 Aligned_cols=13 Identities=8% Similarity=0.043 Sum_probs=6.2
Q ss_pred chhHHHHHHHHHH
Q 008262 8 TDLFKLSALLFVS 20 (572)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (572)
..|+-++.+++|.
T Consensus 22 ~~Wl~~i~~~~v~ 34 (97)
T PF04834_consen 22 NYWLYAIGIVLVF 34 (97)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555444443
No 342
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=41.47 E-value=97 Score=32.02 Aligned_cols=92 Identities=18% Similarity=0.190 Sum_probs=52.2
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc---cCCC--CCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT---RRLP--YPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~---e~LP--fp~~sFDlI~ 343 (572)
.+..+||..|+|. |..+..++.. +|+++.-++. +.++.++.+....+..... +.+- .....+|+|+
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~-----~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vl 232 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDE-----RLEFARELGADDTINVGDEDVAARLRELTDGEGADVVI 232 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHH-----HHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEE
Confidence 3567899998763 5666666655 6666644432 2244444553222211100 1110 1334689998
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.... ....+.++.+.|+++|.++...
T Consensus 233 d~~g-------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 233 DATG-------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred ECCC-------CHHHHHHHHHHHhcCCEEEEEc
Confidence 6421 1356788999999999998654
No 343
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=41.09 E-value=21 Score=43.61 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=3.6
Q ss_pred CCCCCCCCC
Q 008262 85 SPAPVDPLP 93 (572)
Q Consensus 85 ~~~~~~~~~ 93 (572)
.-|||.|||
T Consensus 18 ~epps~ppp 26 (2365)
T COG5178 18 FEPPSQPPP 26 (2365)
T ss_pred CCCCCCCCC
Confidence 334444333
No 344
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=40.68 E-value=73 Score=33.73 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=56.8
Q ss_pred CCCCEEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc---ccCC-CC-CCCCeeEE
Q 008262 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFA---TRRL-PY-PSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d---~e~L-Pf-p~~sFDlI 342 (572)
+...+||=.|. |.|.++.+|++. .++++--+. ...+++++.|....+...+ .+.+ .+ ....+|+|
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~-----~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv 215 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSS-----EKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVV 215 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCH-----HHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEE
Confidence 45788999984 456888888876 445553333 2234666666543332110 1111 11 22469999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+..-. ...+.+..+.|+++|.++....
T Consensus 216 ~D~vG--------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 216 LDTVG--------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred EECCC--------HHHHHHHHHHhccCCEEEEEec
Confidence 96422 5678889999999999998754
No 345
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=39.72 E-value=1e+02 Score=32.20 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=52.5
Q ss_pred CCCCEEEEECCC-CchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----CC-CCCCeeE
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----PY-PSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-----Pf-p~~sFDl 341 (572)
.+..+||-.|+| .|..+..+++. .|+++|.++. ....+++.|....+.. ....+ .+ ....+|+
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~-----~~~~~~~~g~~~~v~~-~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPN-----RVELAKEYGATDIVDY-KNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH-----HHHHHHHcCCceEecC-CCCCHHHHHHHHhCCCCCcE
Confidence 456788888876 34555555544 3677766542 2355555554322211 11111 11 2346899
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.... ....+.++.+.|+++|.++...
T Consensus 239 vld~~g-------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 239 VIIAGG-------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred EEECCC-------CHHHHHHHHHHhhcCCEEEEec
Confidence 985311 1357889999999999998654
No 346
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=38.97 E-value=96 Score=32.05 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=49.3
Q ss_pred CCCCEEEEECCC-CchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc------ccCCCCCCCCeeE
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFA------TRRLPYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d------~e~LPfp~~sFDl 341 (572)
.+..+||..|+| .|..+..+++. .+++++.+.. ..+.+++.+....+.... ...+ ...+.+|+
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~-----~~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~ 239 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPE-----RLDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVDC 239 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHH-----HHHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCcE
Confidence 345788887765 35555555443 4566644432 223444444222211110 0011 12357999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.... ....+.++.+.|+++|.++...
T Consensus 240 vld~~g-------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 240 VIEAVG-------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEEccC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 985311 1257888899999999988664
No 347
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=38.96 E-value=2.4e+02 Score=30.76 Aligned_cols=92 Identities=10% Similarity=0.031 Sum_probs=55.1
Q ss_pred EEEEECCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCCCCCeeEEEeccccccccCCh
Q 008262 277 VVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHCSRCRINWTRDD 355 (572)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~ 355 (572)
.||-|+=.-|.++..|+...++.+. .....+.+..+.+...+.+.. +...+. .-+++ +.+|+|+. .|....
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~~-ds~~~~~~~~~n~~~n~~~~~~~~~~~~-~~~~~-~~~d~vl~-----~~PK~~ 118 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSIG-DSYISELATRENLRLNGIDESSVKFLDS-TADYP-QQPGVVLI-----KVPKTL 118 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCeee-hHHHHHHHHHHHHHHcCCCcccceeecc-ccccc-CCCCEEEE-----EeCCCH
Confidence 6999999999999999866555441 111223333344444555422 111111 11223 45899884 343333
Q ss_pred ---HHHHHHHHHhccCCeEEEEEE
Q 008262 356 ---GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 356 ---~~~L~ei~RvLKPGG~lv~st 376 (572)
...|..+.++|.||+.++...
T Consensus 119 ~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 119 ALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEE
Confidence 467888999999999987654
No 348
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=38.45 E-value=3.2e+02 Score=28.12 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=26.1
Q ss_pred cCCC-CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 330 RRLP-YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e~LP-fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.|| .+.+.+-+++.- ..+.......|..++..|.|||++++-.
T Consensus 168 dTLp~~p~~~IAll~lD---~DlYesT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 168 DTLPDAPIERIALLHLD---CDLYESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp HHCCC-TT--EEEEEE------SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred hhhccCCCccEEEEEEe---ccchHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 3455 234445444432 1222233589999999999999999986
No 349
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=38.31 E-value=1.3e+02 Score=30.64 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=50.1
Q ss_pred CCCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.+..+||=.|+| .|..+..++.. +|++++.++. ..+++++.|....+. .... ...+.+|+|+....
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~-----~~~~~~~~g~~~~~~---~~~~-~~~~~~d~vid~~g- 223 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSE-----KLALARRLGVETVLP---DEAE-SEGGGFDVVVEATG- 223 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH-----HHHHHHHcCCcEEeC---cccc-ccCCCCCEEEECCC-
Confidence 356788888764 23333333333 5666655543 335555555432221 1111 23456999985311
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
....+..+.+.|+++|.++...
T Consensus 224 ------~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 224 ------SPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred ------ChHHHHHHHHHhhcCCEEEEEc
Confidence 1346788889999999998743
No 350
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=37.88 E-value=65 Score=32.84 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=34.4
Q ss_pred CEEEEECCCCchhHHHhc--cCCeEEEeCCccchH--HHHHHHHHHcCCC-------cEEEecc-ccCCCCCCCCeeEEE
Q 008262 276 RVVMDAGCGVASFGAYLL--PRNVITMSIAPKDVH--ENQIQFALERGAP-------AMVAAFA-TRRLPYPSQAFDLIH 343 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~--~~~V~gvDiSp~dl~--~a~~~~A~~rg~~-------~~~~~~d-~e~LPfp~~sFDlI~ 343 (572)
.+|||.-+|-|.-+..++ ..+|++++-+|.... +...+.+...... ..+...| .+-|..++++||+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 489999999997655444 348999999986421 1111222221111 1222222 344666689999999
Q ss_pred ecccccc
Q 008262 344 CSRCRIN 350 (572)
Q Consensus 344 ss~~l~h 350 (572)
.-.++-+
T Consensus 157 ~DPMFp~ 163 (234)
T PF04445_consen 157 FDPMFPE 163 (234)
T ss_dssp E--S---
T ss_pred ECCCCCC
Confidence 8877544
No 351
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=37.43 E-value=23 Score=43.24 Aligned_cols=6 Identities=50% Similarity=1.149 Sum_probs=2.4
Q ss_pred CCCCCC
Q 008262 91 PLPPPP 96 (572)
Q Consensus 91 ~~~~~~ 96 (572)
||..||
T Consensus 20 pps~pp 25 (2365)
T COG5178 20 PPSQPP 25 (2365)
T ss_pred CCCCCC
Confidence 444333
No 352
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=37.20 E-value=1.1e+02 Score=32.35 Aligned_cols=92 Identities=15% Similarity=0.056 Sum_probs=48.3
Q ss_pred CCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
+..+||-+|+| .|.++..+++. ++++++.++.. ....+++.|....+...+.+.+.-....+|+|+-...
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~----~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g-- 253 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKK----REEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVP-- 253 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHH----HHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCC--
Confidence 45778888765 35555555544 56666554321 1122233444222111111111101125888884311
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
....+.++.+.|++||.++...
T Consensus 254 -----~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 254 -----VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred -----chHHHHHHHHHhccCCEEEEEC
Confidence 1347788889999999998875
No 353
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.08 E-value=31 Score=36.86 Aligned_cols=96 Identities=16% Similarity=0.063 Sum_probs=55.7
Q ss_pred CCCEEEEEC-CCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEec-cccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAG-CGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAF-ATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIG-CGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~-d~e~LPfp~~sFDlI~ss~~l 348 (572)
++++|--+| +|-|+++..+++. +|+++|-+...- .+..+..|...++... +.....--.++.|.++-.-
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kk----eea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v-- 254 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKK----EEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTV-- 254 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhH----HHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceee--
Confidence 455655555 3589999888877 899999886322 2333344554443322 1111111124555554211
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEECC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~P 378 (572)
..+ ....|..+.+.||++|.+++...|
T Consensus 255 ~~~---a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 255 SNL---AEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred eec---cccchHHHHHHhhcCCEEEEEeCc
Confidence 111 245677788999999999999764
No 354
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=36.32 E-value=32 Score=39.64 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=27.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCcc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPK 305 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~ 305 (572)
.+...|||++|..|.|.....+. -|+|||+.|.
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 56788999999999998765543 5899999886
No 355
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=35.99 E-value=40 Score=32.36 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=10.6
Q ss_pred CccceecCCCCcccccc
Q 008262 102 ERFGIVNEDGTMSDDFE 118 (572)
Q Consensus 102 ~~~~~~~~~~~~~~~~~ 118 (572)
.+|=|.|...++...|.
T Consensus 80 v~F~vtD~~~~v~V~Y~ 96 (160)
T PRK13165 80 VSFTLYDAGGSVTVTYE 96 (160)
T ss_pred EEEEEEcCCeEEEEEEc
Confidence 46666666666665555
No 356
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=35.50 E-value=1.4e+02 Score=30.80 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=50.7
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---C-eEEEeCCccchHHHHHHHHHHcCCCcEEEeccc--cCC-CC-CCCCeeEEE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---N-VITMSIAPKDVHENQIQFALERGAPAMVAAFAT--RRL-PY-PSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~-V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~--e~L-Pf-p~~sFDlI~ 343 (572)
.+..+||-.|+|. |.++..++.. + |++++-+.. ..+...+.+....+...+. +.+ .. ....+|+|+
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~-----~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vl 232 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDE-----KLAVARELGADDTINPKEEDVEKVRELTEGRGADLVI 232 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH-----HHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEE
Confidence 3457888888754 5555555543 4 666655542 2234444444222211100 000 11 223599998
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
... .....+..+.++|+++|.++...
T Consensus 233 d~~-------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 233 EAA-------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred ECC-------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 531 12457788999999999988764
No 357
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=35.03 E-value=1.5e+02 Score=32.01 Aligned_cols=98 Identities=16% Similarity=0.088 Sum_probs=53.8
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---C-eEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC----CC--CCCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---N-VITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----LP--YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~-V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~----LP--fp~~sFDl 341 (572)
....+||=.|+|. |.++..++.. . |+++|.++ ...+.+++.|... +....... +. .....+|+
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~-----~r~~~a~~~Ga~~-v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNP-----ARLAQARSFGCET-VDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-----HHHHHHHHcCCeE-EecCCcccHHHHHHHHcCCCCCcE
Confidence 3456777788763 4555455543 3 44445443 3456777777532 21110001 10 12246899
Q ss_pred EEeccccccc--------cCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 342 IHCSRCRINW--------TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 342 I~ss~~l~hw--------~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+-... ... ..+....+.++.+++|+||.+++...
T Consensus 258 vid~~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 258 AVDCVG-FEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred EEECCC-CccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 985322 110 11123589999999999999999864
No 358
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=35.01 E-value=1.1e+02 Score=32.48 Aligned_cols=93 Identities=14% Similarity=0.064 Sum_probs=54.0
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc-ccC----C-CCCCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFA-TRR----L-PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d-~e~----L-Pfp~~sFDl 341 (572)
....+||=+|||. |.++..+++. +|+++|.++. ..+.+++.|....+...+ .+. + ....+.+|+
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~-----~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~ 258 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPA-----KFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDY 258 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH-----HHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCE
Confidence 4567899999863 5555555543 5778876653 345666666533221110 000 0 011236898
Q ss_pred EEeccccccccCChHHHHHHHHHhccCC-eEEEEEEC
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAG-GYFAWAAQ 377 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPG-G~lv~st~ 377 (572)
|+-. + . ....+.+..+.|++| |.+++...
T Consensus 259 vid~-~-----G-~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 259 SFEC-I-----G-NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EEEC-C-----C-CHHHHHHHHHHhhcCCCeEEEEec
Confidence 8853 1 1 145788888999996 99887753
No 359
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=34.84 E-value=1.7e+02 Score=29.87 Aligned_cols=87 Identities=20% Similarity=0.183 Sum_probs=48.6
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.+..+||=.|||. |..+..++.. +|++++-+.. ..+.+++.+....+ +.+.. ..+.+|+++....
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~-----~~~~~~~~g~~~~~---~~~~~--~~~~vD~vi~~~~- 234 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGE-----HQELARELGADWAG---DSDDL--PPEPLDAAIIFAP- 234 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChH-----HHHHHHHhCCcEEe---ccCcc--CCCcccEEEEcCC-
Confidence 3456777787652 2333333333 6666655542 33455555542211 11211 2356888874211
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
....+.++.+.|+++|.++...
T Consensus 235 ------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 ------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred ------cHHHHHHHHHHhhcCCEEEEEc
Confidence 1357899999999999999754
No 360
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=34.79 E-value=1.3e+02 Score=31.74 Aligned_cols=92 Identities=15% Similarity=0.084 Sum_probs=53.2
Q ss_pred CCCCEEEEECCC-CchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc-CC-----CCCCCCeeE
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR-RL-----PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e-~L-----Pfp~~sFDl 341 (572)
.+..+||=+|+| .|.++..+++. .|+++|.++. ..+.+++.|....+...+.. .+ ....+.+|+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~-----~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~ 259 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPD-----KFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDY 259 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH-----HHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcE
Confidence 456888888875 24555555543 4778877654 33556656643322111100 00 012236899
Q ss_pred EEeccccccccCChHHHHHHHHHhccCC-eEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAG-GYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPG-G~lv~st 376 (572)
|+-... ....+.++.+.|+++ |.++...
T Consensus 260 vid~~g-------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 260 TFECIG-------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred EEECCC-------ChHHHHHHHHhhccCCCeEEEEc
Confidence 985311 135788889999997 9988765
No 361
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=33.88 E-value=1.4e+02 Score=31.61 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=51.4
Q ss_pred CCCCEEEEECCC-CchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc-c----CC-CCCCCCeeE
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-R----RL-PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~-e----~L-Pfp~~sFDl 341 (572)
.+..+||=+|+| .|.++..++.. .|+++|.++. ..+++++.+....+...+. . .+ ....+.+|+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~-----~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~ 257 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINED-----KFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDY 257 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH-----HHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCE
Confidence 456788888875 24444444443 4777776543 3355555554322211110 0 00 011246899
Q ss_pred EEeccccccccCChHHHHHHHHHhccCC-eEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAG-GYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPG-G~lv~st 376 (572)
|+-... ....+.+..+.|+++ |.++...
T Consensus 258 vid~~g-------~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 258 SFECTG-------NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred EEECCC-------ChHHHHHHHHhcccCCCEEEEEc
Confidence 984311 135778889999986 9998775
No 362
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=33.88 E-value=3.2e+02 Score=23.78 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=32.5
Q ss_pred EEEEECCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEec
Q 008262 277 VVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss 345 (572)
+||=+ ||+|.-+..+.+ ..-.+..+++|++....+......+-.....|+|+++
T Consensus 3 KIL~a-CG~GvgSS~~ik--------------~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s 56 (93)
T COG3414 3 KILAA-CGNGVGSSTMIK--------------MKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTS 56 (93)
T ss_pred EEEEE-CCCCccHHHHHH--------------HHHHHHHHHcCCCceeeeEEecccccCCCcccEEEEe
Confidence 35544 999865544433 3334667788886544444444454344677999986
No 363
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=33.87 E-value=1.6e+02 Score=30.67 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=50.6
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---C-eEEEeCCccchHHHHHHHHHHcCCCcEEEecccc------CC--CCCCCCe
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---N-VITMSIAPKDVHENQIQFALERGAPAMVAAFATR------RL--PYPSQAF 339 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~-V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e------~L--Pfp~~sF 339 (572)
.+..+||-.|+|. |..+..+++. + |++++-++. +.+++++.+....+...+.. .+ ......+
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~-----~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPS-----RLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGP 235 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH-----HHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCC
Confidence 4567888888764 5555555554 4 666654432 22344444433222111100 00 1233559
Q ss_pred eEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 340 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 340 DlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+|+-... ....+.++.+.|+++|.++...
T Consensus 236 d~vld~~g-------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 236 DVVIECTG-------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CEEEECCC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 99985311 1236788899999999998764
No 364
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=33.63 E-value=1.7e+02 Score=33.03 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=62.6
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccc---cCCC---CCCCCeeE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFAT---RRLP---YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~---e~LP---fp~~sFDl 341 (572)
.....+|-+|=|.|.+...+... .++++++.|.++..+...+-......+ .....+. .++- -.+..||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 34567899999999888877654 799999999998655543332221111 1111111 1111 14567888
Q ss_pred EEecc---ccccccCCh-----HHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSR---CRINWTRDD-----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~---~l~hw~~d~-----~~~L~ei~RvLKPGG~lv~st 376 (572)
+.--- -.+...-.+ ..+|..+..+|.|-|.|++-.
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 87321 012221111 378888999999999998875
No 365
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=32.98 E-value=35 Score=35.24 Aligned_cols=32 Identities=9% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC---------CeEEEeCCc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---------NVITMSIAP 304 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---------~V~gvDiSp 304 (572)
.+...++|+|||.|.++.++... .++-||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 45678999999999988877643 567777644
No 366
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=32.79 E-value=45 Score=36.78 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=8.7
Q ss_pred CCeeEEEeccccccc
Q 008262 337 QAFDLIHCSRCRINW 351 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw 351 (572)
..||+|=|..+-+|.
T Consensus 392 a~~eiinc~~v~iQv 406 (480)
T KOG2675|consen 392 AIVEIINCQDVQIQV 406 (480)
T ss_pred eeeEEeeccceeeEE
Confidence 456777766554444
No 367
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=32.43 E-value=1.1e+02 Score=32.84 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=60.8
Q ss_pred CCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
...+|.-||.|. |.-++.++-. +|+.+|++..-+++.- ...+.......-....+.-.-...|+|+.. +++
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ld----d~f~~rv~~~~st~~~iee~v~~aDlvIga-VLI 241 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLD----DLFGGRVHTLYSTPSNIEEAVKKADLVIGA-VLI 241 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhh----HhhCceeEEEEcCHHHHHHHhhhccEEEEE-EEe
Confidence 446788899885 6667666544 8999999875442211 111222111111112222223468999965 667
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEE
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
.-...+.-..+|+...+|||+.++=.
T Consensus 242 pgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 242 PGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred cCCCCceehhHHHHHhcCCCcEEEEE
Confidence 77677788999999999999998654
No 368
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=32.22 E-value=1.4e+02 Score=31.00 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=50.3
Q ss_pred CCEEEEECC--CCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH-cCCCcEEEeccccCC-----CCCCCCeeEE
Q 008262 275 IRVVMDAGC--GVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-RGAPAMVAAFATRRL-----PYPSQAFDLI 342 (572)
Q Consensus 275 ~~~VLDIGC--GtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~-rg~~~~~~~~d~e~L-----Pfp~~sFDlI 342 (572)
..+||=.|+ |.|.++..++.. +|++++-++. ..+.+++ .|....+... .+.+ ....+.+|+|
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~-----~~~~~~~~lGa~~vi~~~-~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDE-----KCQLLKSELGFDAAINYK-TDNVAERLRELCPEGVDVY 228 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHH-----HHHHHHHhcCCcEEEECC-CCCHHHHHHHHCCCCceEE
Confidence 378988886 456666666553 4777755542 2244433 5543322211 1111 0122569999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.... ...+.++.+.|+++|.++...
T Consensus 229 id~~g--------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 229 FDNVG--------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred EECCC--------cHHHHHHHHHhccCCEEEEEe
Confidence 85321 123578899999999998753
No 369
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=31.64 E-value=4.5e+02 Score=26.23 Aligned_cols=40 Identities=13% Similarity=-0.018 Sum_probs=24.3
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
..++|+|+-...-......+..-+..+...+...|..+++
T Consensus 117 ~~~~dvIVDalfG~G~~g~lrep~a~~Ie~iN~~~~pivA 156 (203)
T COG0062 117 PESADVIVDALFGTGLSGPLREPFASLIEAINASGKPIVA 156 (203)
T ss_pred cccCCEEEEeceecCCCCCCccHHHHHHHHHHhcCCceEE
Confidence 4689999965444455444455555555555566665555
No 370
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=31.40 E-value=41 Score=31.85 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=11.8
Q ss_pred CccceecCCCCcccccc
Q 008262 102 ERFGIVNEDGTMSDDFE 118 (572)
Q Consensus 102 ~~~~~~~~~~~~~~~~~ 118 (572)
.+|-|.|++.++...|.
T Consensus 73 ~~F~ltD~~~~i~V~Y~ 89 (148)
T PRK13254 73 VRFVVTDGNATVPVVYT 89 (148)
T ss_pred EEEEEEeCCeEEEEEEC
Confidence 67888887766665554
No 371
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=31.30 E-value=1.2e+02 Score=32.30 Aligned_cols=45 Identities=13% Similarity=0.263 Sum_probs=31.4
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccch
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDV 307 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl 307 (572)
++++.+.|. ..+....+|.=-|.|..+..++++ .|+|+|-++.++
T Consensus 9 l~Evl~~L~----~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~ 57 (310)
T PF01795_consen 9 LKEVLEALN----PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEAL 57 (310)
T ss_dssp HHHHHHHHT------TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHH
T ss_pred HHHHHHhhC----cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHH
Confidence 455555554 346678999999999999888875 799999888655
No 372
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=31.15 E-value=2.3e+02 Score=29.70 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=49.2
Q ss_pred CCCEEEEECCC-CchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC--------C-CCCCCe
Q 008262 274 HIRVVMDAGCG-VASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL--------P-YPSQAF 339 (572)
Q Consensus 274 ~~~~VLDIGCG-tG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L--------P-fp~~sF 339 (572)
+..+||=.|+| .|..+..++.. +|++++.++. ..+.+++.+....+... .... . ...+.+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~-----~~~~~~~~g~~~vi~~~-~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPE-----RLELAREFGADATIDID-ELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH-----HHHHHHHcCCCeEEcCc-ccccHHHHHHHHHHhCCCCC
Confidence 56778888865 23444444433 5666654432 23444555543222111 0000 0 122468
Q ss_pred eEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 340 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 340 DlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+|+.... ....+.+..+.|+++|.++...
T Consensus 251 d~vid~~g-------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 251 DVVIEASG-------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred cEEEECCC-------ChHHHHHHHHHhccCCEEEEEc
Confidence 99985311 1346788899999999998764
No 373
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=29.98 E-value=66 Score=35.12 Aligned_cols=41 Identities=24% Similarity=0.490 Sum_probs=0.0
Q ss_pred CCCCeeEEEeccccccccCCh--HHHHHHHHHhccCCeEEEEEE
Q 008262 335 PSQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st 376 (572)
+++++|.++.+.. ..|.++. ...++++.|.++|||.+++-+
T Consensus 292 ~~~s~~~~vL~D~-~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 292 PPGSFDRFVLSDH-MDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CCCCeeEEEecch-hhhCCHHHHHHHHHHHHHHhCCCCEEEEee
No 374
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=29.73 E-value=33 Score=33.03 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhccCCeEEEEEE
Q 008262 355 DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 355 ~~~~L~ei~RvLKPGG~lv~st 376 (572)
....+.+++|+|||||.+++..
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~ 56 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFI 56 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEEe
Confidence 4588999999999999999885
No 375
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=28.86 E-value=2.2e+02 Score=29.47 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=49.3
Q ss_pred CCCEEEEECCC-CchhHHHhccC---C-eEEEeCCccchHHHHHHHHHHcCCCcEEEeccc---cCC-C-CCCCCeeEEE
Q 008262 274 HIRVVMDAGCG-VASFGAYLLPR---N-VITMSIAPKDVHENQIQFALERGAPAMVAAFAT---RRL-P-YPSQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCG-tG~~a~~L~~~---~-V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~---e~L-P-fp~~sFDlI~ 343 (572)
++.+||-.|+| .|..+..++.. + |++++-++ ...+.+++.+....+..... +.+ . ...+.||+|+
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~-----~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vl 235 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNE-----YRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFL 235 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH-----HHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEE
Confidence 45677777765 34454445443 4 66664433 22344455554322211100 001 0 1235699998
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.... ....+.++.+.|+++|.++...
T Consensus 236 d~~g-------~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 236 EMSG-------APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred ECCC-------CHHHHHHHHHhhcCCCEEEEEc
Confidence 5311 1356888999999999998764
No 376
>PRK06701 short chain dehydrogenase; Provisional
Probab=28.45 E-value=2.8e+02 Score=28.33 Aligned_cols=30 Identities=7% Similarity=0.152 Sum_probs=18.6
Q ss_pred CCEEEEECCCCc---hhHHHhccC--CeEEEeCCc
Q 008262 275 IRVVMDAGCGVA---SFGAYLLPR--NVITMSIAP 304 (572)
Q Consensus 275 ~~~VLDIGCGtG---~~a~~L~~~--~V~gvDiSp 304 (572)
.+++|-+|++.| .++..|+++ +|+.++...
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467888887655 344455544 677666654
No 377
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.14 E-value=2.1e+02 Score=28.69 Aligned_cols=90 Identities=21% Similarity=0.191 Sum_probs=52.7
Q ss_pred CCCCEEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEec-c-ccCC-CCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAF-A-TRRL-PYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~-d-~e~L-Pfp~~sFDlI~s 344 (572)
.++.+||=.|+ +.|..+..+++. +|++++.++. ..+.+.+.+....+... + .+.+ .+ .+.+|+|+.
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~ 214 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPE-----RAALLKELGADEVVIDDGAIAEQLRAA-PGGFDKVLE 214 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHhcCCcEEEecCccHHHHHHHh-CCCceEEEE
Confidence 35678888886 345666556554 6777655542 23455555543322111 0 0000 12 457999985
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
... ...+.++.+.|+++|.++...
T Consensus 215 ~~~--------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 215 LVG--------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred CCC--------hHHHHHHHHHhccCCEEEEEc
Confidence 321 246888899999999998764
No 378
>COG4889 Predicted helicase [General function prediction only]
Probab=28.10 E-value=6e+02 Score=31.33 Aligned_cols=126 Identities=14% Similarity=0.130 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCch------hHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcE-EEec
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVAS------FGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAM-VAAF 327 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~------~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~ 327 (572)
+...++...+.+.+. .+-=|-+.||||- .+..|+...+.-+-.|-..+++...+.+.+...+.. ..+.
T Consensus 166 Qq~Aid~a~~~F~~n-----~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aVc 240 (1518)
T COG4889 166 QQTAIDAAKEGFSDN-----DRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKELDFRASAVC 240 (1518)
T ss_pred HHHHHHHHHhhcccc-----cCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCccceeEEEe
Confidence 444555555655531 2224667899992 333444446665555555666666666666544321 1111
Q ss_pred cccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH
Q 008262 328 ATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390 (572)
Q Consensus 328 d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w 390 (572)
..... +.+-+=|..+..-+....+...+|.++...-|+.|.+++-+ .+.++..+.++.
T Consensus 241 SD~kv---srs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFs--TYQSl~~i~eAQ 298 (1518)
T COG4889 241 SDDKV---SRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFS--TYQSLPRIKEAQ 298 (1518)
T ss_pred cCccc---cccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEE--cccchHHHHHHH
Confidence 11111 12333344444545666777899999999999999987764 466666655554
No 379
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=27.80 E-value=1.3e+02 Score=33.05 Aligned_cols=85 Identities=18% Similarity=0.085 Sum_probs=50.7
Q ss_pred CCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
.+++|+=+|+|. |......+.. +|+++|.++.-. ..+...|.. +. +.++. . ...|+|++..
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~-----~~A~~~G~~--v~--~leea-l--~~aDVVItaT--- 258 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRA-----LEAAMDGFR--VM--TMEEA-A--KIGDIFITAT--- 258 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhH-----HHHHhcCCE--eC--CHHHH-H--hcCCEEEECC---
Confidence 568999999996 5444433332 788998877421 223333431 11 11211 1 3469988642
Q ss_pred cccCChHHHHH-HHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLL-EVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~-ei~RvLKPGG~lv~st~ 377 (572)
. ...++. +....+|+|++++....
T Consensus 259 ---G-~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 259 ---G-NKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred ---C-CHHHHHHHHHhcCCCCcEEEEECC
Confidence 1 244454 58889999999998864
No 380
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=27.79 E-value=1.1e+02 Score=32.31 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=26.2
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+-||+|+.+....|...+ ++.++++|||.|++-+
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p------~l~~~~a~~A~LvvEt 254 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP------ELFQALAPDAVLVVET 254 (289)
T ss_pred cCCCCEEEEhhhhHhhcch------HHHHHhCCCCEEEEEc
Confidence 4789999976554555332 3778999999999986
No 381
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=27.76 E-value=1.8e+02 Score=30.65 Aligned_cols=90 Identities=20% Similarity=0.159 Sum_probs=49.3
Q ss_pred CCCEEEEECCC-CchhHHHhccC---C-eEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC------CCCCCCeeEE
Q 008262 274 HIRVVMDAGCG-VASFGAYLLPR---N-VITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL------PYPSQAFDLI 342 (572)
Q Consensus 274 ~~~~VLDIGCG-tG~~a~~L~~~---~-V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L------Pfp~~sFDlI 342 (572)
+..+||-.|+| .|..+..+++. . |++++-++. ..+++.+.+....+.. ....+ -.....||+|
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~-----~~~~~~~~g~~~v~~~-~~~~~~~~l~~~~~~~~~d~v 260 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDE-----KLAKAKELGATHTVNA-AKEDAVAAIREITGGRGVDVV 260 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHH-----HHHHHHHhCCceEecC-CcccHHHHHHHHhCCCCCCEE
Confidence 45677766764 34444444443 4 777765542 2344444454322211 11111 0124569999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.... . ...+.++.+.|+++|.++...
T Consensus 261 ld~vg------~-~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 261 VEALG------K-PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEeCC------C-HHHHHHHHHHHhcCCEEEEEc
Confidence 85421 1 136788899999999998764
No 382
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=27.33 E-value=76 Score=34.32 Aligned_cols=98 Identities=15% Similarity=0.095 Sum_probs=48.1
Q ss_pred CCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
+..+|+=+|+|. |..+...+.. +|+.+|.++..+. +.+...+........+.+.+.-.-..+|+|++... .
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~----~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~-~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLR----QLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVL-I 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHH----HHHHhcCceeEeccCCHHHHHHHHccCCEEEEccc-c
Confidence 456799999983 5444444433 7888887753221 11222221111100111111101136899996421 1
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.-...+..+-.++.+.+|||+.++-..
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 111112223466777889998877543
No 383
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=27.13 E-value=2.4e+02 Score=29.28 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=48.4
Q ss_pred CCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-----CCCCCeeEEE
Q 008262 274 HIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-----YPSQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP-----fp~~sFDlI~ 343 (572)
++.+||-.|+|. |..+..++.. .|++++-++ .....+.+.+....+. .....+. ...+.+|+|+
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~-----~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~vd~vl 236 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNP-----YRLELAKKMGADVVIN-PREEDVVEVKSVTDGTGVDVVL 236 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH-----HHHHHHHHhCcceeeC-cccccHHHHHHHcCCCCCCEEE
Confidence 456777777753 4555555543 355553332 2223444445422111 1111110 1235689998
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.... ....+.++.+.|+++|.++...
T Consensus 237 d~~g-------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 237 EMSG-------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred ECCC-------CHHHHHHHHHHhccCCEEEEEc
Confidence 5421 1456788899999999998764
No 384
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=27.08 E-value=1.2e+02 Score=33.54 Aligned_cols=85 Identities=20% Similarity=0.148 Sum_probs=49.5
Q ss_pred CCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
.+++|+=+|+|. |......+.. +|+.+|.++.-. ..+...|.. +. +.+.+ -..+|+|+...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra-----~~A~~~G~~--v~--~l~ea---l~~aDVVI~aT--- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICA-----LQAAMDGFR--VM--TMEEA---AELGDIFVTAT--- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhh-----HHHHhcCCE--ec--CHHHH---HhCCCEEEECC---
Confidence 468999999984 4333332222 788888876422 222223322 11 11111 13589998642
Q ss_pred cccCChHHHHH-HHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLL-EVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~-ei~RvLKPGG~lv~st~ 377 (572)
.. ..++. +..+.+|+|++++....
T Consensus 276 ---G~-~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 276 ---GN-KDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred ---CC-HHHHHHHHHhcCCCCCEEEEcCC
Confidence 12 34554 78899999999988864
No 385
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=26.14 E-value=2.1e+02 Score=29.69 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=47.9
Q ss_pred CCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-CCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-PYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-Pfp~~sFDlI~ss~~l 348 (572)
+..+||=.||| .|..+..++.. .+++++.+.. ..+.+.+.+....+.... ..+ .-..+.+|+|+....
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~-----~~~~~~~~g~~~vi~~~~-~~~~~~~~~~~d~v~~~~g- 241 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPS-----KKEDALKLGADEFIATKD-PEAMKKAAGSLDLIIDTVS- 241 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHH-----HHHHHHHcCCcEEecCcc-hhhhhhccCCceEEEECCC-
Confidence 44666667764 24444444443 5666665543 224444445332221111 111 011356899985321
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. ...+.++.+.|+++|.++...
T Consensus 242 -----~-~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 242 -----A-SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred -----C-cchHHHHHHHhcCCCEEEEEe
Confidence 1 134788899999999998764
No 386
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=25.61 E-value=1.5e+02 Score=31.00 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=49.2
Q ss_pred CEEEEECCCC--chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 276 RVVMDAGCGV--ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 276 ~~VLDIGCGt--G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
.+|+=+|.|- |++++.|.+. .+++.|.+. +....+.+.++....... . .--.....|+|+.+-
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~-----~~~~~a~~lgv~d~~~~~-~--~~~~~~~aD~Vivav--- 72 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSA-----ATLKAALELGVIDELTVA-G--LAEAAAEADLVIVAV--- 72 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcH-----HHHHHHhhcCcccccccc-h--hhhhcccCCEEEEec---
Confidence 5678888773 5777777776 356665554 333455555543211110 0 011234589998652
Q ss_pred cccCChHHHHHHHHHhccCCeEEE
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv 373 (572)
.. .....+++++...|++|..+.
T Consensus 73 Pi-~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 73 PI-EATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred cH-HHHHHHHHHhcccCCCCCEEE
Confidence 22 233678888888888887663
No 387
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=25.15 E-value=3.1e+02 Score=28.84 Aligned_cols=92 Identities=18% Similarity=0.171 Sum_probs=50.3
Q ss_pred CCCCEEEEECCC-CchhHHHhccC---C-eEEEeCCccchHHHHHHHHHHcCCCcEEEecc---ccCC-C-CCCCCeeEE
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR---N-VITMSIAPKDVHENQIQFALERGAPAMVAAFA---TRRL-P-YPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~-V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d---~e~L-P-fp~~sFDlI 342 (572)
.+..+||-.|+| .|..+..+++. . |++++-+.. +.+.+.+.+....+.... .+.+ . .+.+.+|+|
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~-----~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~v 255 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPE-----KLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYA 255 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHH-----HHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEE
Confidence 345788888875 35454455443 3 666655442 224444445422111100 0001 1 124569999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.... ....+.++.+.|+++|.++...
T Consensus 256 ld~~~-------~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 256 FEAVG-------RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred EEcCC-------ChHHHHHHHHHhhcCCeEEEEe
Confidence 85321 1356788999999999998764
No 388
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=25.03 E-value=2.6e+02 Score=27.80 Aligned_cols=90 Identities=18% Similarity=0.150 Sum_probs=49.9
Q ss_pred CCCCEEEEECCC--CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----C-CCCCCeeE
Q 008262 273 HHIRVVMDAGCG--VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----P-YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCG--tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-----P-fp~~sFDl 341 (572)
.+..+||-.||. .|..+..++.. .|+.++.+.. ..+.+.+.+....+... ...+ . .....+|+
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~-----~~~~~~~~g~~~~~~~~-~~~~~~~i~~~~~~~~~d~ 211 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEE-----KLALARALGADHVIDYR-DPDLRERVKALTGGRGVDV 211 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHH-----HHHHHHHcCCceeeecC-CccHHHHHHHHcCCCCcEE
Confidence 356789999982 34444444443 6777766543 23444445543222211 1011 0 12346899
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++.... ...+..+.+.++++|.++...
T Consensus 212 v~~~~g--------~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 212 VYDPVG--------GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred EEECcc--------HHHHHHHHHhhccCCEEEEEc
Confidence 886422 235567788999999988754
No 389
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=24.94 E-value=58 Score=35.95 Aligned_cols=7 Identities=14% Similarity=0.079 Sum_probs=3.0
Q ss_pred CeEEEEE
Q 008262 369 GGYFAWA 375 (572)
Q Consensus 369 GG~lv~s 375 (572)
||.++++
T Consensus 420 Gc~iYLS 426 (480)
T KOG2675|consen 420 GCHIYLS 426 (480)
T ss_pred CeeEEec
Confidence 4444444
No 390
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=24.60 E-value=1.3e+02 Score=30.13 Aligned_cols=98 Identities=10% Similarity=0.051 Sum_probs=51.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC--------CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-------CCCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-------YPSQ 337 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--------~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP-------fp~~ 337 (572)
.+++.|+++|.-.|..+...+.. +|+++|++-..+..+..+ -....+...+..+.. ...+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 45688999999888655544432 799999987665443322 112223322211110 0111
Q ss_pred CeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.--+.+|-.+ .|-++..-..|+-..++|..|-|+++-+
T Consensus 143 y~kIfvilDs-dHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 143 YPKIFVILDS-DHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred CCcEEEEecC-CchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 1122233222 3333333455666677888888887764
No 391
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=24.42 E-value=2.3e+02 Score=29.85 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=52.3
Q ss_pred CCCCEEEEECCC-CchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCC-----CCCCCCeeE
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRL-----PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~-e~L-----Pfp~~sFDl 341 (572)
.+..+||=.|+| .|.++..+++. .|++++.++. ..+.+++.|....+...+. +.+ ....+.+|+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~-----~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~ 260 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPS-----KFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDY 260 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH-----HHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCE
Confidence 456888889875 24444444443 4777776653 3456666664332211110 011 012236898
Q ss_pred EEeccccccccCChHHHHHHHHHhccCC-eEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAG-GYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPG-G~lv~st 376 (572)
|+-... ....+.++.+.+++| |.+++..
T Consensus 261 vid~~G-------~~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 261 SFECTG-------NIDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred EEECCC-------ChHHHHHHHHHhhcCCCEEEEEC
Confidence 884311 145777888999996 9998775
No 392
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=24.36 E-value=1.5e+02 Score=25.55 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=39.3
Q ss_pred CCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHH
Q 008262 282 GCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLE 361 (572)
Q Consensus 282 GCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~e 361 (572)
=||+|.-+..+++ ...+.+.+++.+..+...+...+.-....+|+|++. +.....+.+
T Consensus 5 ~Cg~G~sTS~~~~---------------ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~-------Pqv~~~~~~ 62 (96)
T cd05564 5 VCSAGMSTSILVK---------------KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLG-------PQVRYMLDE 62 (96)
T ss_pred EcCCCchHHHHHH---------------HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEC-------hhHHHHHHH
Confidence 3888865544432 234667777777555544433333223568999975 333556777
Q ss_pred HHHhccCCeE
Q 008262 362 VNRMLRAGGY 371 (572)
Q Consensus 362 i~RvLKPGG~ 371 (572)
+.+.+.+.+.
T Consensus 63 i~~~~~~~~~ 72 (96)
T cd05564 63 VKKKAAEYGI 72 (96)
T ss_pred HHHHhccCCC
Confidence 7765554444
No 393
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=24.35 E-value=2.4e+02 Score=29.80 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=51.9
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc---ccCC-CCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFA---TRRL-PYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d---~e~L-Pfp~~sFDlI~ 343 (572)
.+..+||-.|+|. |.++..++.. .++++|.++. ..+.+.+.+....+...+ .+.+ ....+.+|+|+
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~-----k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vl 259 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDS-----RLELAKELGATHVINPKEEDLVAAIREITGGGVDYAL 259 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH-----HHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEE
Confidence 3467888888753 4555555543 4777776653 234555555432221110 0000 01135689998
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.... ....+.++.+.|+++|.++...
T Consensus 260 d~~g-------~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 260 DTTG-------VPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred ECCC-------CcHHHHHHHHHhccCCEEEEeC
Confidence 5311 1346788999999999998864
No 394
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=24.32 E-value=1.2e+02 Score=35.06 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=38.3
Q ss_pred CCCCEEEEECCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss 345 (572)
.+..+|| +-||+|.-+..+.+ ....+..+++|++..+...+..+.+-..+.+|+|+++
T Consensus 504 ~k~mKIL-vaCGsGiGTStmva--------------~kIkk~Lke~GI~veV~~~~Vsev~s~~~~aDIIVtt 561 (602)
T PRK09548 504 GKPVRIL-AVCGQGQGSSMMMK--------------MKIKKYLDKRGIPIIMDSCAVNDYKGKLETIDIIVCS 561 (602)
T ss_pred CcccEEE-EECCCCchHHHHHH--------------HHHHHHHHHcCCCeEEEEechHhCcccCCCCCEEEEc
Confidence 3456777 44999966554433 2333667788887666666666676555679999986
No 395
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=24.09 E-value=27 Score=37.03 Aligned_cols=6 Identities=17% Similarity=0.529 Sum_probs=2.9
Q ss_pred Hhcccc
Q 008262 25 YLGKRW 30 (572)
Q Consensus 25 ~~~~~~ 30 (572)
|+-.|.
T Consensus 198 YVke~h 203 (312)
T PF01213_consen 198 YVKEHH 203 (312)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 554444
No 396
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=24.06 E-value=2e+02 Score=29.89 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=48.1
Q ss_pred CCEEEEECCCC-c-hhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 275 IRVVMDAGCGV-A-SFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 275 ~~~VLDIGCGt-G-~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
..+|.=||+|. | .++..|... .|+++|.++.. .+.+.+.+...... .+.+.. -...|+|+..-..
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~-----~~~a~~~g~~~~~~-~~~~~~---~~~aDvViiavp~ 76 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAET-----RARARELGLGDRVT-TSAAEA---VKGADLVILCVPV 76 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHH-----HHHHHhCCCCceec-CCHHHH---hcCCCEEEECCCH
Confidence 36788999986 3 466666543 57888876542 23444444321111 111111 1357999865321
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEE
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAW 374 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~ 374 (572)
.....++.++...+++|..++.
T Consensus 77 ----~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 77 ----GASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ----HHHHHHHHHHHhhCCCCCEEEe
Confidence 1124567777778888876543
No 397
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.90 E-value=49 Score=35.90 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008262 1 MKNPLSNTDLFKLSALLFVSFTFFYLGK 28 (572)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (572)
|+.-++.|-++||++|||..++|.|+.-
T Consensus 1 MdK~lns~W~irIiaff~A~~Lfl~vn~ 28 (403)
T COG4856 1 MDKFLNSPWLIRIIAFFFAILLFLYVNN 28 (403)
T ss_pred CcchhcCcHhHHHHHHHHHHHhheeecc
Confidence 7778889999999999998877765543
No 398
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=23.86 E-value=2.7e+02 Score=28.30 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=51.3
Q ss_pred CCEEEEECCC--CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc--cCC-CCCCCCeeEEEecc
Q 008262 275 IRVVMDAGCG--VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT--RRL-PYPSQAFDLIHCSR 346 (572)
Q Consensus 275 ~~~VLDIGCG--tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~--e~L-Pfp~~sFDlI~ss~ 346 (572)
..+||=+|+. .|..+..++.. +|++++-++. ..+.+++.|....+...+. +.+ .+....+|+|+...
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~-----~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~ 221 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKAD-----AADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPV 221 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHH-----HHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECC
Confidence 4688888872 34555555544 6776665543 2355555554322211110 100 11235689888532
Q ss_pred ccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. ...+.++.+.|+++|.++....
T Consensus 222 g--------~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 222 G--------GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred c--------HHHHHHHHHHhhcCCEEEEEee
Confidence 1 2467889999999999988753
No 399
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=23.41 E-value=89 Score=28.54 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=25.0
Q ss_pred CCeeEEEeccccccccCCh--HHHHHHHHHhccCCeEEEEE
Q 008262 337 QAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~s 375 (572)
..||+|+-....-.-.++. ..+|+++.|+++|||.+.-.
T Consensus 49 ~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty 89 (124)
T PF05430_consen 49 ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATY 89 (124)
T ss_dssp T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES
T ss_pred ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEe
Confidence 6788888654222211121 58999999999999987543
No 400
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=22.92 E-value=3.2e+02 Score=28.18 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=50.7
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC---CCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP---YPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP---fp~~sFDlI~ss 345 (572)
....+||=.|||. |..+..++.. +|+.++.++. ..+++.+.+....+ ......+. .....+|+|+..
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~-----~~~~~~~~g~~~~i-~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSD-----KADLARKLGAHHYI-DTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChH-----HHHHHHHcCCcEEe-cCCCccHHHHHHhcCCCCEEEEC
Confidence 3567899998642 3444444443 6777766543 33555555542222 11111110 001348888853
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.. ....+.++.+.|+++|.++...
T Consensus 236 ~g-------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 236 AP-------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred CC-------chHHHHHHHHHcccCCEEEEEe
Confidence 11 1457888899999999998765
No 401
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=22.90 E-value=3.8e+02 Score=28.47 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=22.5
Q ss_pred CeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+|+|+.. . . ...+.+..+.|+++|.++...
T Consensus 285 g~d~vid~-~-----g--~~~~~~~~~~l~~~G~~v~~g 315 (393)
T cd08246 285 DPDIVFEH-P-----G--RATFPTSVFVCDRGGMVVICA 315 (393)
T ss_pred CCeEEEEC-C-----c--hHhHHHHHHHhccCCEEEEEc
Confidence 58888853 1 1 235777889999999998764
No 402
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=22.67 E-value=3.2e+02 Score=28.15 Aligned_cols=89 Identities=25% Similarity=0.228 Sum_probs=50.2
Q ss_pred CCCCEEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC---CC-CCCCCeeEEE
Q 008262 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR---LP-YPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~---LP-fp~~sFDlI~ 343 (572)
.+..+||=+|+ +.|..+..+++. ++++++-+. ..+.+++.+.. .+....... .. .....+|+|+
T Consensus 176 ~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~------~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~vi 248 (350)
T cd08274 176 GAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA------KEEAVRALGAD-TVILRDAPLLADAKALGGEPVDVVA 248 (350)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch------hhHHHHhcCCe-EEEeCCCccHHHHHhhCCCCCcEEE
Confidence 45678999997 244555555543 666665321 23455555543 222111000 11 1235699998
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.... ...+.++.+.|+++|.++...
T Consensus 249 ~~~g--------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 249 DVVG--------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred ecCC--------HHHHHHHHHHhccCCEEEEec
Confidence 5321 236788899999999998653
No 403
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=22.41 E-value=49 Score=22.56 Aligned_cols=19 Identities=32% Similarity=0.642 Sum_probs=16.4
Q ss_pred cCCCCCCCCCccccCCCCC
Q 008262 183 RHCPLNGTGLNCLVPAPKG 201 (572)
Q Consensus 183 r~Cp~~~~~~~Clv~~P~~ 201 (572)
-||||.+-+|..+.|.|+.
T Consensus 5 a~~pppeislna~fptppa 23 (32)
T PF07629_consen 5 ADCPPPEISLNARFPTPPA 23 (32)
T ss_pred CCCCCCcceeccccCCChh
Confidence 5899999999999998864
No 404
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=22.17 E-value=2.8e+02 Score=28.85 Aligned_cols=92 Identities=15% Similarity=0.089 Sum_probs=49.5
Q ss_pred CCCCEEEEECCC-CchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc---cCC-C-CCCCCeeEE
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT---RRL-P-YPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~---e~L-P-fp~~sFDlI 342 (572)
.++.+||=.|+| .|.++.+++.. .|++++.++. ..+.+.+.+....+...+. +.+ . ...+.+|+|
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~-----~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~v 245 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEA-----RRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVS 245 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEE
Confidence 346788888864 23444444443 4566655443 2344444454322211110 001 0 122358999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+-... ....+.++.+.|+++|.++...
T Consensus 246 id~~g-------~~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 246 FDCAG-------VQATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred EECCC-------CHHHHHHHHHhccCCCEEEEEc
Confidence 85311 1346788999999999998765
No 405
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=21.70 E-value=3.1e+02 Score=30.63 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=60.9
Q ss_pred CCCCEEEEEC-CCCc------hhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------
Q 008262 273 HHIRVVMDAG-CGVA------SFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-------- 333 (572)
Q Consensus 273 ~~~~~VLDIG-CGtG------~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP-------- 333 (572)
.++..||=+| =|+| -++.+|.++ -++++|+--...-+...+.+.+.+++.+-. +.+.-|
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~--~~~~~Pv~Iak~al 175 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS--GTEKDPVEIAKAAL 175 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC--CCCCCHHHHHHHHH
Confidence 3456788887 3555 455666555 366777654322122224455555543222 223323
Q ss_pred --CCCCCeeEEEecc-ccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 --YPSQAFDLIHCSR-CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 --fp~~sFDlI~ss~-~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+..+.||+|+.-- ..+|..++.-.-+.++.++++|.=.|++.+-
T Consensus 176 ~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 176 EKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred HHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 2356799998753 3455544445778889999999999988864
No 406
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=21.69 E-value=4.9e+02 Score=27.37 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=60.9
Q ss_pred CEEEEECCCC-c-hhHHHhccCC-eEEEeCCccchHHHHHHHHHHcCCCcEEEec------cccCCCCCCCCeeEEEecc
Q 008262 276 RVVMDAGCGV-A-SFGAYLLPRN-VITMSIAPKDVHENQIQFALERGAPAMVAAF------ATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 276 ~~VLDIGCGt-G-~~a~~L~~~~-V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~------d~e~LPfp~~sFDlI~ss~ 346 (572)
.+|+=+|+|. | .++..|.+.. .+.+..-. ...+..++.|+...-... .....+.....+|+|+..-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~-----~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRS-----RRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecH-----HHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe
Confidence 3688899994 4 6677777663 33332221 122333344432111100 0011112234699999642
Q ss_pred ccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHH
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKE 392 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~ 392 (572)
-. -+...++..+...+++...+++.- .+.++.+++++.+..
T Consensus 76 --Ka--~q~~~al~~l~~~~~~~t~vl~lq-NG~g~~e~l~~~~~~ 116 (307)
T COG1893 76 --KA--YQLEEALPSLAPLLGPNTVVLFLQ-NGLGHEEELRKILPK 116 (307)
T ss_pred --cc--ccHHHHHHHhhhcCCCCcEEEEEe-CCCcHHHHHHHhCCc
Confidence 22 244799999999999999887774 478888877776643
No 407
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=21.65 E-value=3.9e+02 Score=26.75 Aligned_cols=85 Identities=25% Similarity=0.277 Sum_probs=50.0
Q ss_pred CCEEEEECCC--CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 275 IRVVMDAGCG--VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 275 ~~~VLDIGCG--tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
..+||=.|++ .|..+..++.. +|++++-++. ..+.+++.|....+.. .+.+ ..+.+|+++....
T Consensus 133 ~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~-----~~~~~~~~g~~~~~~~--~~~~--~~~~~d~vl~~~g-- 201 (305)
T cd08270 133 GRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPA-----RAEGLRELGAAEVVVG--GSEL--SGAPVDLVVDSVG-- 201 (305)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHcCCcEEEec--cccc--cCCCceEEEECCC--
Confidence 6788888874 44444444443 6666654432 3355555554322211 1222 2356899985311
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
...+.++.+.|+++|.++...
T Consensus 202 ------~~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 202 ------GPQLARALELLAPGGTVVSVG 222 (305)
T ss_pred ------cHHHHHHHHHhcCCCEEEEEe
Confidence 235788999999999998764
No 408
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=21.12 E-value=6e+02 Score=25.04 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=48.2
Q ss_pred CCCCEEEEECCC--CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC--CCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCG--VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL--PYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCG--tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L--Pfp~~sFDlI~ss 345 (572)
.+..+||=.|+. .|..+..++.. +|+.++.+. ..+.+.+.+....+...+ ... ....+.+|+++..
T Consensus 143 ~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~d~v~~~ 215 (309)
T cd05289 143 KAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA------NADFLRSLGADEVIDYTK-GDFERAAAPGGVDAVLDT 215 (309)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch------hHHHHHHcCCCEEEeCCC-CchhhccCCCCceEEEEC
Confidence 356788888862 34444444433 566655433 224444444322221111 111 1233568988853
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.. ...+.++.+.|+++|.++...
T Consensus 216 ~~--------~~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 216 VG--------GETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred Cc--------hHHHHHHHHHHhcCcEEEEEc
Confidence 21 226778889999999998764
No 409
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=21.07 E-value=1e+02 Score=30.70 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=30.7
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKD 306 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~d 306 (572)
..+..|.+.++.. ...+++|.=||+|+.+..++.. .|+.-|+.+.-
T Consensus 7 ~l~~~I~~~ip~~----~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l 54 (260)
T PF02086_consen 7 KLAKWIIELIPKN----KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDL 54 (260)
T ss_dssp GGHHHHHHHS-S-----S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHH
T ss_pred HHHHHHHHHcCCC----CCCEEEEEecchhHHHHHhcccccceeeeechHHH
Confidence 3467777888731 5689999999999999888533 78888988753
No 410
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.69 E-value=1.4e+02 Score=29.24 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=31.5
Q ss_pred CCCCeeEEEeccccccccC-----------ChHHHHHHHHHhccCCeEEEEEE
Q 008262 335 PSQAFDLIHCSRCRINWTR-----------DDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~-----------d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..+..|+||.+.|+..+.. +.+.++..+..+|+++-.+++.+
T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 4567899999998876644 23466777777888999998874
No 411
>KOG4494 consensus Cell surface ATP diphosphohydrolase Apyrase [Nucleotide transport and metabolism]
Probab=20.58 E-value=1.2e+02 Score=31.96 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=24.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhccccCC
Q 008262 4 PLSNTDLFKLSALLFVSFTFFYLGKRWSD 32 (572)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (572)
.-.++.|.-+.+|+++.+.+||+|.|++.
T Consensus 3 ~rfn~~~~~~l~~~~~~ail~~~~sh~~~ 31 (352)
T KOG4494|consen 3 QRFNSNFFNFLLFGFVTAILFYSGSHFNK 31 (352)
T ss_pred cccccchHHHHHHHHHHHHHHHhhccCCC
Confidence 34578899999999999999999988864
No 412
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=20.56 E-value=2.1e+02 Score=24.77 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=43.4
Q ss_pred CEEEEECCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccccCCh
Q 008262 276 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD 355 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~ 355 (572)
.+|| +=||+|.-+..++ ....+.+.++|.+..+...+..+++-....+|+|+.. +..
T Consensus 4 ~~IL-l~C~~G~sSS~l~---------------~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~-------pqi 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLV---------------NKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLA-------PQV 60 (95)
T ss_pred cEEE-EECCCchhHHHHH---------------HHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEEC-------chH
Confidence 4566 4499995554433 2234667778887655554443343223468999865 233
Q ss_pred HHHHHHHHHhccCCeEEEE
Q 008262 356 GILLLEVNRMLRAGGYFAW 374 (572)
Q Consensus 356 ~~~L~ei~RvLKPGG~lv~ 374 (572)
...+.++...+.+-|.=+.
T Consensus 61 ~~~~~~i~~~~~~~~ipv~ 79 (95)
T TIGR00853 61 AYMLPDLKKETDKKGIPVE 79 (95)
T ss_pred HHHHHHHHHHhhhcCCCEE
Confidence 4566667766655444333
No 413
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.44 E-value=2.4e+02 Score=25.92 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=48.8
Q ss_pred CEEEEECCCCc-hhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC--CCCCCCCeeEEEecccccc
Q 008262 276 RVVMDAGCGVA-SFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR--LPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 276 ~~VLDIGCGtG-~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~--LPfp~~sFDlI~ss~~l~h 350 (572)
.+|.++|-|-= ..+..|+++ .|+++|+.+. .+. .|+. +..+|... +.. -...|+|.|..+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~--------~a~-~g~~--~v~DDitnP~~~i-Y~~A~lIYSiRp--- 79 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK--------TAP-EGLR--FVVDDITNPNISI-YEGADLIYSIRP--- 79 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEecccc--------cCc-ccce--EEEccCCCccHHH-hhCccceeecCC---
Confidence 48999998864 466777777 7899998774 222 2332 22333322 222 245799998765
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEE
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
.++....+.++.+.++- -+++.
T Consensus 80 -ppEl~~~ildva~aVga--~l~I~ 101 (129)
T COG1255 80 -PPELQSAILDVAKAVGA--PLYIK 101 (129)
T ss_pred -CHHHHHHHHHHHHhhCC--CEEEE
Confidence 23445667677766654 44454
No 414
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=20.39 E-value=81 Score=30.84 Aligned_cols=7 Identities=29% Similarity=0.605 Sum_probs=3.1
Q ss_pred eEEEeec
Q 008262 36 RILFFSS 42 (572)
Q Consensus 36 ~~~~~~~ 42 (572)
|.-||..
T Consensus 127 Q~~FYe~ 133 (225)
T KOG3397|consen 127 QCRFYES 133 (225)
T ss_pred chhhhhh
Confidence 4444443
No 415
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=20.11 E-value=82 Score=34.97 Aligned_cols=36 Identities=33% Similarity=0.605 Sum_probs=27.6
Q ss_pred cEEeeecccccchhHHHHhh--------cCCCCceeeeccCCCC
Q 008262 518 KLRNVLDMRAGFGGFAAALI--------EQKFDCWVMNVVPVSG 553 (572)
Q Consensus 518 ~~rnvmdm~a~~ggfaaal~--------~~~~~~wvmnvvp~~~ 553 (572)
-+.-+.||-.|+|||||++. +..|..|+-|-=|.+.
T Consensus 206 GFq~l~Did~GfgG~as~~le~l~DEys~~~v~tw~~~~~p~s~ 249 (483)
T KOG2530|consen 206 GFQLLSDIDDGFGGFASKLLEELQDEYSKKAVFTWGHNPRPFSQ 249 (483)
T ss_pred ceEEEEecCCCchhHHHHHHHHHHHhhcCCceeccccCCCCCCc
Confidence 46678999999999999986 3455669988766543
Done!