Query 008264
Match_columns 572
No_of_seqs 169 out of 2024
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 22:04:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 9.4E-31 3.2E-35 282.4 31.3 445 11-554 7-478 (491)
2 2xut_A Proton/peptide symporte 100.0 7.5E-31 2.6E-35 285.7 20.3 470 13-556 8-511 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 1.3E-25 4.6E-30 238.7 28.6 398 18-550 29-436 (451)
4 3o7q_A L-fucose-proton symport 99.9 5.2E-24 1.8E-28 225.7 32.0 177 13-221 22-227 (438)
5 4gc0_A D-xylose-proton symport 99.9 2.7E-25 9.1E-30 239.5 22.4 410 52-562 54-477 (491)
6 2gfp_A EMRD, multidrug resista 99.9 2.7E-22 9.1E-27 208.4 18.8 166 21-218 4-169 (375)
7 2cfq_A Lactose permease; trans 99.9 1.2E-21 4E-26 207.4 11.6 169 17-214 7-178 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 4.2E-12 1.4E-16 134.3 13.9 177 17-222 252-432 (451)
9 3o7q_A L-fucose-proton symport 99.3 3.7E-11 1.3E-15 126.5 17.8 169 17-219 258-428 (438)
10 2cfq_A Lactose permease; trans 99.2 2.7E-11 9.2E-16 127.6 12.7 165 30-225 233-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 3.4E-10 1.2E-14 121.2 14.9 185 19-226 285-474 (491)
12 4gc0_A D-xylose-proton symport 98.9 3.1E-08 1.1E-12 105.8 19.3 182 19-226 278-465 (491)
13 2gfp_A EMRD, multidrug resista 98.7 4.7E-09 1.6E-13 108.1 1.7 160 19-210 201-363 (375)
14 2xut_A Proton/peptide symporte 98.1 1.1E-06 3.9E-11 94.5 4.1 150 55-226 337-505 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=9.4e-31 Score=282.44 Aligned_cols=445 Identities=16% Similarity=0.198 Sum_probs=294.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHh-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCcc
Q 008264 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCRE-----YNMETTAATNIIFIWTAATNFLPIVGALLADS-YVGRY 84 (572)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr-~~Grr 84 (572)
..+.++|..+.+.+..+++++++|++...++.|++++ +|++..+.+++.+.+.++..++.+++|+++|| + |||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r 85 (491)
T 4aps_A 7 TFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GAR 85 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cch
Confidence 3455678888888999999999999999999999998 99999999999999999999999999999999 8 999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCC
Q 008264 85 RMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDG 164 (572)
Q Consensus 85 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 164 (572)
+++..+.++..++.+++++++ +.+.++++|+++|+|.+...++..++++|++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~- 141 (491)
T 4aps_A 86 PAVFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD- 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC-----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT-
T ss_pred HHHHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc-
Confidence 999999999999999988765 66779999999999999999999999999999855
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccC---CCCC-CchhH
Q 008264 165 TKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSK---ANTS-LLPGL 240 (572)
Q Consensus 165 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~ 240 (572)
+.|+.++++++...++|..++|.+++++.+..|||++|++.++..+++++.++...+++.+++ ++.+ +..+.
T Consensus 142 ----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4aps_A 142 ----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEV 217 (491)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHH
T ss_pred ----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchh
Confidence 347889999999999999999999999998899999999987777766665544433322211 1111 11111
Q ss_pred HHH---------------HHHHHhhcccCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCC
Q 008264 241 TQV---------------LVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPN 305 (572)
Q Consensus 241 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (572)
.+. +.... ....+.. +........ .......+... ...+
T Consensus 218 ~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~------~~~~~~~~~~~--~~~~--------------- 271 (491)
T 4aps_A 218 KPLLVKVSLAVAGFIAIIVVMNL-VGWNSLP--AYINLLTIV------AIAIPVFYFAW--MISS--------------- 271 (491)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHH-HSSCCTT--HHHHHHHHH------HHHHHHHHHHH--HC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccCcccc--cchhhhhHH------HHHHHHHHHHH--Hhhc---------------
Confidence 110 00000 0000000 000000000 00000000000 0000
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-c-hhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhh
Q 008264 306 SLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-S-SFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAV 383 (572)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 383 (572)
. .....++++......++.....++..+.+ . .+..+.....+... ...+.....+.+..++..++.+++
T Consensus 272 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l- 342 (491)
T 4aps_A 272 --V-KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPVSWFQSLNPLFIMLYTPFFAWL- 342 (491)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-----SCSGGGTTHHHHHHHHHHHHHHHH-
T ss_pred --c-cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-----cCHHHHhccchHHHHHHHHHHHHH-
Confidence 0 00011222222334444445555555555 2 22222222223221 335667777777777777765554
Q ss_pred hhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 008264 384 LPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNM 463 (572)
Q Consensus 384 ~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~ 463 (572)
.+|+++|+ ....+.+.+|..+.+++++.+...... .+ .....+.+++++.+++.+++++...
T Consensus 343 ---~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~l~g~~~~~~~ 404 (491)
T 4aps_A 343 ---WTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGAL-------YG------TSGKVSPLWLVGSWALVILGEMLIS 404 (491)
T ss_dssp ---HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH-------CC------CCTTCCTHHHHHHHHHHHHHHHTTT
T ss_pred ---HHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHh-------cC------CCCCccHHHHHHHHHHHHHHHHHHh
Confidence 45655553 455677788888888887776654311 00 0112466777888899999999999
Q ss_pred hhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 008264 464 IGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLY 543 (572)
Q Consensus 464 ~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~ 543 (572)
+..+.++.+.+|++.||+++|+.++...+|+.+++.+.+.+.+. ++...|+++++++++..++
T Consensus 405 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 467 (491)
T 4aps_A 405 PVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIV 467 (491)
T ss_dssp THHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987665421 2345677788888888777
Q ss_pred HHHhhhhcccc
Q 008264 544 YLACCKAYGPF 554 (572)
Q Consensus 544 ~~~~~~~~~~~ 554 (572)
.+...++.+++
T Consensus 468 ~~~~~~~~~~~ 478 (491)
T 4aps_A 468 LVFLSKRIQGL 478 (491)
T ss_dssp HHHC-------
T ss_pred HHHHHHHHHHH
Confidence 77776665544
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=7.5e-31 Score=285.72 Aligned_cols=470 Identities=19% Similarity=0.298 Sum_probs=285.4
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcC------CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchh
Q 008264 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYN------METTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM 86 (572)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~ 86 (572)
+.++|.++.+.+..++.++++|++...++.|+++++| +++.+++++.+.+.++..++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4456677778889999999999999999999999999 9999999999999999999999999999995599999
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcc
Q 008264 87 IGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK 166 (572)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 166 (572)
+..+.++..++.++++++. .+.+.++++|++.|++.+...|+..++++|.+|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r-- 143 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK-- 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT--
T ss_pred HHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch--
Confidence 9999999999998887643 1467788999999999999999999999999998552
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHH
Q 008264 167 SKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVA 246 (572)
Q Consensus 167 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (572)
.++...+++++...++|..++|.+++++.+..||+++|++.++..+++++.++...++.+++++++++..+..+.+..
T Consensus 144 --~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (524)
T 2xut_A 144 --SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221 (524)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence 112445666999999999999999999988889999999988877766666555544433322222221121112212
Q ss_pred HHhhcccCCCCcccchh----------cccCCCccccC--------------CCchhhh--hhhhhcccCCCCCCCCCCC
Q 008264 247 SFKNRRTKLPTQATEEM----------YHHGKGSMRLM--------------PSENLRF--LNKACMAKHPEQDLTPDGR 300 (572)
Q Consensus 247 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~--------------~~~~~~~--~~~~~~~~~~~~~~~~~~~ 300 (572)
..+++..+.+ ..... ......+ ... ......| .+.....
T Consensus 222 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 286 (524)
T 2xut_A 222 ALLTKVEGKG--NIGLVLALIGGVSAAYALVNIP-TLGIVAGLCCAMVLVMGFVGAGASLQLERARKS------------ 286 (524)
T ss_dssp -----CTTHH--HHHHHHHHHHHHHHHHTGGGTT-TTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCS------------
T ss_pred HHhhhhcccC--ccchhhhhhhhhhhhhhhcccc-hhhhhhhhhhhhhhhhcccccchhhHHhhhhcc------------
Confidence 2221110000 00000 0000000 000 0000000 0000000
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHH
Q 008264 301 ASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLY 379 (572)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 379 (572)
.+....++.++.......+.....++..+.+ .+....+...++... + .+.+.+...+.+..++..++.
T Consensus 287 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~ 355 (524)
T 2xut_A 287 -------HPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFN 355 (524)
T ss_dssp -------CCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGT
T ss_pred -------ccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHH
Confidence 0000112233444444555445555666666 443333333333221 1 134555566666666666666
Q ss_pred hhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHH
Q 008264 380 DRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAM 459 (572)
Q Consensus 380 ~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~ 459 (572)
+++..+..+|.+++ .+..+++.+|+++.+++++.++..... . +.....+.+++++.+++.++++
T Consensus 356 ~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~l~g~~~ 419 (524)
T 2xut_A 356 NFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLM----------M---DGGSALSIFWQILPYALLTFGE 419 (524)
T ss_dssp TTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTT----------T---TTTCCCCSHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH----------h---cCCCCcCHHHHHHHHHHHHHHH
Confidence 66555555554333 556677888888888877665543200 0 0001236677788889999999
Q ss_pred HHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC-CCCCcchhHHHHHHHHHHH
Q 008264 460 AFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS-NINKGHYDYYYWLLTALSM 538 (572)
Q Consensus 460 ~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~l 538 (572)
+...+..++++.+.+|++.||+++|+.++..++|+.+++.+.+.+.+..+ .+|..+ +. +.....|++.+++++
T Consensus 420 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~ 493 (524)
T 2xut_A 420 VLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGM--SVTAFQMFFFAGFAI 493 (524)
T ss_dssp HHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccc--cccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887764221 122210 00 001223777788888
Q ss_pred HHHHHHHHhhhhccccCC
Q 008264 539 ANFLYYLACCKAYGPFKG 556 (572)
Q Consensus 539 v~~~~~~~~~~~~~~~~~ 556 (572)
++.++++++.+++++++.
T Consensus 494 ~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 494 LAAIVFALYARSYQMQDH 511 (524)
T ss_dssp HHHHHHC-----------
T ss_pred HHHHHHHHHHHHhccchh
Confidence 888777777666655443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=1.3e-25 Score=238.67 Aligned_cols=398 Identities=10% Similarity=-0.005 Sum_probs=248.6
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
.+..+.+..++..+..+.+.+.++. +.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPY-LVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHH-TTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHH
Confidence 3444555666666666666555554 45677 9999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHH----hhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 98 MVLLWS----TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 98 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
.+++++ +. +.+.++++|+++|++.+...++..++++|.+|+ ++|++
T Consensus 106 ~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~ 155 (451)
T 1pw4_A 106 MLFMGFVPWATS-----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGG 155 (451)
T ss_dssp HHHHHHCHHHHS-----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHH
T ss_pred HHHHHhhhhccc-----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hhhhH
Confidence 999988 66 567799999999999999999999999999998 45999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhheecccc-cchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcc
Q 008264 174 YFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRR 252 (572)
Q Consensus 174 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (572)
++++.+...++|..++|.+++++.+..| ||++|++.++..++..+..+...++.++.....++
T Consensus 156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 219 (451)
T 1pw4_A 156 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI---------------- 219 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh----------------
Confidence 9999999999999999999998888888 99999998877666555544443332111100000
Q ss_pred cCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008264 253 TKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMI 332 (572)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (572)
.+... + ..++ ..++ + .....++........+.+.+...... ..+.
T Consensus 220 ~~~~~-~------~~~~-----~~~~-----------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 264 (451)
T 1pw4_A 220 EEYKN-D------YPDD-----YNEK-----------A---------EQELTAKQIFMQYVLPNKLLWYIAIA---NVFV 264 (451)
T ss_dssp TTTCC-C--------------------------------------------CCTHHHHHHTSSCHHHHHHHHH---HHHH
T ss_pred hhhcc-c------cccc-----chhh-----------h---------hcccccccchHHHHHcCHHHHHHHHH---HHHH
Confidence 00000 0 0000 0000 0 00000000000000001122111111 1111
Q ss_pred HHhhccchhhhhhhccCCCCCCCCceecc---cccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHH
Q 008264 333 AVTISQSSFLVLQASSMDRHVTPNFEIPS---GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLF 409 (572)
Q Consensus 333 ~~~~~q~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~ 409 (572)
...+.. ...+....+....+ .+. +.......+..+++..+ ...+.+|+.+ ++++.+.++..+
T Consensus 265 ~~~~~~--~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~~~~-----~~~~~~~~~~~~ 329 (451)
T 1pw4_A 265 YLLRYG--ILDWSPTYLKEVKH----FALDKSSWAYFLYEYAGIPGTLL----CGWMSDKVFR-----GNRGATGVFFMT 329 (451)
T ss_dssp HHHHHH--HHHHHHHHBTTBSC----CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTST-----TCHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhc-----CCchhHHHHHHH
Confidence 111111 00111111222121 112 22333333333333333 3333455300 233555555555
Q ss_pred HH-HHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHH
Q 008264 410 ST-ASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGA 488 (572)
Q Consensus 410 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~ 488 (572)
.. ++++...... ..+.+.+....++.+++.....+....++.+..|++.||+++|+.++
T Consensus 330 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (451)
T 1pw4_A 330 LVTIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 389 (451)
T ss_dssp HHHHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHH
Confidence 44 4443332211 12445566666778888888888888899999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 008264 489 GLSA-ANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKA 550 (572)
Q Consensus 489 ~~~i-g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~ 550 (572)
...+ |+.+++.+.+.+.+.. ++...|++.+++.+++.+..+...++
T Consensus 390 ~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 390 FGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 9999999988776432 24667788888888877776665543
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=5.2e-24 Score=225.67 Aligned_cols=177 Identities=15% Similarity=0.102 Sum_probs=147.5
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHH
Q 008264 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (572)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 92 (572)
+.+++.+..+.+..++..+......+. .+++++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 334455555566666676666655444 4457889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHH---HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCccccc
Q 008264 93 TCLLGMVLL---WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (572)
Q Consensus 93 ~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (572)
+.+++.+++ +++. +++.++++|+++|+|.+...++..++++|.+|+ +
T Consensus 100 ~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~ 149 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM-----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------S 149 (438)
T ss_dssp HHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-------T
T ss_pred HHHHHHHHHHhccccc-----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc-------h
Confidence 999999988 5544 788899999999999999999999999999998 4
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhhee-cccc-------------------------cchhhhHHHHHHHHHHHHHH
Q 008264 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQ-DNLG-------------------------WKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 170 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~~-------------------------w~~~f~~~~~~~~~~~~~~~ 221 (572)
+|+++.++++...++|..++|.+++++. +..+ ||+.|++.+...++..+.++
T Consensus 150 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 150 SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999887 5544 99999877665554444433
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.93 E-value=2.7e-25 Score=239.54 Aligned_cols=410 Identities=12% Similarity=0.027 Sum_probs=224.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhH
Q 008264 52 TTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLM 131 (572)
Q Consensus 52 ~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (572)
..+.+++.+++.++..++++++|+++||+ |||+++.++.+++.++.++++++........+ .......-..+.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-----~~~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP-----DNTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-----SSSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----hhHHHHHHhhhHH
Confidence 45678899999999999999999999998 99999999999999999999864311000000 0000001123788
Q ss_pred HHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheec--------ccccc
Q 008264 132 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD--------NLGWK 203 (572)
Q Consensus 132 ~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--------~~~w~ 203 (572)
.++++|+++|+|.|+..+..+++++|..|+ ++|++..++.+....+|..+++.++..+.. ..+||
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWR 200 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhH
Confidence 899999999999999999999999999998 569999999999999999999887665432 23577
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCceec---cCCCCCCchhHHHHHHHHHhhcccCCCCcccchhcccCCCccccCCCchhh
Q 008264 204 VGFGVPAVIMLLSALSFFLASPFYVK---SKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLR 280 (572)
Q Consensus 204 ~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (572)
+.+.+..+..++.++.. ...|+-++ .+.+.++ ..+.+.....+.. ..++. .+..+
T Consensus 201 ~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~---a~~~l~~~~~~~~------~~~~~------------~~~~~ 258 (491)
T 4gc0_A 201 YMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQ---AEGILRKIMGNTL------ATQAV------------QEIKH 258 (491)
T ss_dssp HHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHH---HHHHHHHHHHHHH------HHHHH------------HHHHH
T ss_pred HHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhH---HHHhHHHhcCCch------hHHHH------------HHHHH
Confidence 77766555444333322 22222111 1111111 1111100000000 00000 00000
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH--HHHhhccchhhhhhhccCCCCCCCCce
Q 008264 281 FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIM--IAVTISQSSFLVLQASSMDRHVTPNFE 358 (572)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~~~~~~~~~l~~~~~ 358 (572)
..+..+.... .......++.........+... ......+.+. .......+.
T Consensus 259 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------- 311 (491)
T 4gc0_A 259 SLDHGRKTGG-------------------RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPE-VFKTLGAST------- 311 (491)
T ss_dssp HHHHHHHHTT-------------------HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSSCCH-------
T ss_pred HHHhhhhhhh-------------------HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchH-HHHhcCCCc-------
Confidence 0000000000 0000001111111111110000 0000000111 111111000
Q ss_pred ecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 008264 359 IPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLR 438 (572)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (572)
...........+..++... +...+.+|+++| +.+..+...+.++++..+.....
T Consensus 312 ~~~~~~~~~~~~~~~~~~~----~~~~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~~--------------- 365 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTV----LAIMTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFYT--------------- 365 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred cchhhHHHHHHHHHHHHHH----HHHHHHHhhcCc-------chhccchHHHHHHHHHHHHHHhc---------------
Confidence 0011111122222222222 233445665444 67777877777777666544310
Q ss_pred ccccchhhHHHHHHHHHHHH-HHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 008264 439 AVVQMSAMWQLPYLVLSGLA-MAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 517 (572)
Q Consensus 439 ~~~~~s~~~l~~~~~l~g~g-~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~ 517 (572)
....+..+....+...+ .....|..+.+..|.+|.+.|++++|+.+..+++++.+++.+.+.+.+... .
T Consensus 366 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~-------~ 435 (491)
T 4gc0_A 366 ---QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW-------L 435 (491)
T ss_dssp ---TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH-------H
T ss_pred ---ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 01111222222222222 222345566788899999999999999999999999999988887653211 0
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCcCccc
Q 008264 518 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAF 562 (572)
Q Consensus 518 ~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~~~ 562 (572)
.. .......|++++++++++.++.+++.||+|+|++||-++.
T Consensus 436 ~~---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 436 VA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp HH---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred Hh---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 00 0012345788899999999999999999999999985443
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=2.7e-22 Score=208.42 Aligned_cols=166 Identities=15% Similarity=0.176 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHH
Q 008264 21 FIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (572)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~ 100 (572)
.+....++..++.....+.++. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence 3455566666666666666665 4678999999999999999999999999999999998 9999999999999999999
Q ss_pred HHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHH
Q 008264 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (572)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (572)
+++++ +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++++++++.
T Consensus 82 ~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 131 (375)
T 2gfp_A 82 AVTTS-----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER-------TQLRHANSLLNM 131 (375)
T ss_dssp HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSCCSHHHHHHH
T ss_pred HHHhc-----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-------HHHHHHHHHHHH
Confidence 98877 788899999999999999999999999999998 348999999999
Q ss_pred HHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHH
Q 008264 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (572)
Q Consensus 181 ~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~ 218 (572)
..++|..++|.+++++.+..+||+.|++.++..++..+
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999987766554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=1.2e-21 Score=207.38 Aligned_cols=169 Identities=9% Similarity=-0.015 Sum_probs=117.4
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
|..+.+....++...++....++++.|+++++|+++.+++++.+.+.++..++++++|+++||+ ||||++..+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4444455555566666666678999999999999999999999999999999999999999998 999999998877655
Q ss_pred HHHHH---HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 97 GMVLL---WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 97 g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
+.... .++... ...++.++++.+++.|...+...+...+..++.. ++|+.
T Consensus 86 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~ 138 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-----RRSNF 138 (417)
T ss_dssp CHHHHHHHTHHHHH----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-----HHHTC
T ss_pred HHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-----hhccc
Confidence 32111 121100 0012344555555555444444444444443311 23566
Q ss_pred hHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHH
Q 008264 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIML 214 (572)
Q Consensus 174 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~ 214 (572)
.++..+...++|..++|.+++++.+ .+|++.|++.++..+
T Consensus 139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~ 178 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCAL 178 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence 6777777789999999999998876 589999987765533
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.35 E-value=4.2e-12 Score=134.28 Aligned_cols=177 Identities=16% Similarity=0.154 Sum_probs=147.1
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CcchhhHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV--GRYRMIGFGCFTC 94 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~--Grr~~~~~~~~~~ 94 (572)
|.++...+..++....++++..+++.|+++.+|.++.+++++.+...++..++.++.|+++|| + |||+.+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 445566667777888888888999999998899999999999999999999999999999999 5 8888888777665
Q ss_pred H-HHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 95 L-LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 95 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
. ++.+++.+.. ..+.+.+++..++.|++.+...+...+++.|.+|+ +.|++
T Consensus 331 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~ 382 (451)
T 1pw4_A 331 VTIATIVYWMNP---------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGT 382 (451)
T ss_dssp HHHHHHHTTSCC---------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHH
T ss_pred HHHHHHHHHHhc---------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------hhhhh
Confidence 5 5554443321 11456677788889999999999999999999998 45999
Q ss_pred hHHHHHHHHHH-HHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHh
Q 008264 174 YFSWYYVFVSA-SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 174 ~~~~~~~~~~~-g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
++++++...++ |..++|.+.+++.+..||+.+|++.+++.+++.+..+.
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999899999999888777766665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.31 E-value=3.7e-11 Score=126.52 Aligned_cols=169 Identities=11% Similarity=0.049 Sum_probs=136.6
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHH-HhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILY-LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 95 (572)
|..+...+..++.....+++..+++.| +++.+|.++.+++.+.+...++..++.+++|+++||+ |||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 344555556666777777788899999 8888899999999999999999999999999999998 99999999998888
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhH
Q 008264 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (572)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (572)
++.++..+.. +... ++..++.|++.+...|...++..|.+|+ + ++.+.
T Consensus 337 ~~~~~~~~~~-----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~-~~~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG-----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQ-------D-TKYGS 384 (438)
T ss_dssp HHHHHHHHCC-----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGG-------G-HHHHH
T ss_pred HHHHHHHHcC-----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhccc-------c-ccchh
Confidence 8877776643 3333 3445888999999999999999998886 2 56666
Q ss_pred HHHHHHHHHHHHHHhhhhhheecccc-cchhhhHHHHHHHHHHHH
Q 008264 176 SWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 176 ~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~~~~ 219 (572)
++.. ...+|..++|.+.|++.+..| ++..|++.+++.++.++.
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 6555 567999999999999999888 999999876655544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.25 E-value=2.7e-11 Score=127.62 Aligned_cols=165 Identities=8% Similarity=0.038 Sum_probs=124.9
Q ss_pred HHHhhcchHHHHHHHhHhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhc
Q 008264 30 RMATVGFTPNMILYLCREYNM---ETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTI 106 (572)
Q Consensus 30 ~~~~~~~~~~l~~yl~~~l~~---~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~ 106 (572)
...++.+...++.|+++.++. +..+.+.+.+...++..++.+++|+++||+ |||+++..+.++..++.++.+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~- 310 (417)
T 2cfq_A 233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT- 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 334444445678888766653 244556777777788888999999999998 999999988888777765554332
Q ss_pred cCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH-HHHHHHHH
Q 008264 107 LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFVSAS 185 (572)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g 185 (572)
+.+.+++..++.+++.+...+...+++.|.+|+ +.|+++.++ ++...++|
T Consensus 311 ----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~lg 361 (417)
T 2cfq_A 311 ----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp ----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTTHHHH
T ss_pred ----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHhHH
Confidence 455566677777887777777788999999998 558998888 47778899
Q ss_pred HHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCC
Q 008264 186 SIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 186 ~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
..++|.++|++.+..|++..|.+.++..+++.+..+...+
T Consensus 362 ~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 362 MIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999988888999998887777766665544433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.14 E-value=3.4e-10 Score=121.21 Aligned_cols=185 Identities=10% Similarity=0.002 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhH-----HHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIG-----FGCFT 93 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-----~~~~~ 93 (572)
...+.+..++....++.....++.|.++.++.+..+.+++.....++..++.++.|+++||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44455556666677777788899999998888877788888889999999999999999998 9987665 67777
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 94 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
..++.+++........ .....+.+.+++..++.|++.+...+...+++.|.+|+ +.|++
T Consensus 364 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-------~~~g~ 422 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-------AFNSQ 422 (491)
T ss_dssp HHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-------TCSSS
T ss_pred HHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------HHHHH
Confidence 7777666554321100 00112456677788899999999999999999999999 44899
Q ss_pred hHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCc
Q 008264 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 174 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
+.++++...++|..+++.+.+++.+ .++.+.|.+.+...+++.+..+...++
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875 467778888777766666665555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.93 E-value=3.1e-08 Score=105.78 Aligned_cols=182 Identities=10% Similarity=0.063 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
.........+..+..+........++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHH
Confidence 33334444444444444444555666778888888888888888899999999999999998 99999999988888887
Q ss_pred HHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHH
Q 008264 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (572)
+.++....... ........+.....+.+. +..|....+.+|.+|. +.|+++.++.
T Consensus 357 ~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt-------~~R~~~~g~~ 411 (491)
T 4gc0_A 357 FSLGTAFYTQA-----------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPN-------AIRGKALAIA 411 (491)
T ss_dssp HHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCT-------TTHHHHHHHH
T ss_pred HHHHHHHhccc-----------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCH-------hHHHHHHHHH
Confidence 77665431111 001111222222223333 3346778899999999 5599999999
Q ss_pred HHHHHHHHHHHhhhhhheec------ccccchhhhHHHHHHHHHHHHHHhcCCc
Q 008264 179 YVFVSASSIVAVTCIVYIQD------NLGWKVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 179 ~~~~~~g~~~g~~~~~~l~~------~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
+....+|..+++.+.+.+.+ ..++...|++.+++.+++.+..++..||
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 99999999998888776643 2456677888777777777766666554
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.65 E-value=4.7e-09 Score=108.13 Aligned_cols=160 Identities=8% Similarity=-0.039 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHH-HHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT-CLLG 97 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~~g 97 (572)
.+...+..++....++++..+++.|+++.+|.++.+++.+.....++..++.++.|+++||+ || + +..+... ...+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~-~-~~~~~~~~~~~~ 277 (375)
T 2gfp_A 201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST-L-MWQSVICCLLAG 277 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH-H-HHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H-HHHHHHHHHHHH
Confidence 44455566677777777778888898888999999999999999999999999999999998 87 2 2333322 2222
Q ss_pred HH--HHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhH
Q 008264 98 MV--LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (572)
Q Consensus 98 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (572)
.. ...... ..+.+.+++..++.|++.+...+...+++.|.+| ++ |+++.
T Consensus 278 ~~~~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~-------~g~~~ 328 (375)
T 2gfp_A 278 LLMWIPDWFG---------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL-------AGTAG 328 (375)
T ss_dssp SSSSHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH-------HHHHH
T ss_pred HHHHHHhhhc---------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc-------cchHH
Confidence 22 111110 0145556778889999999999999999999987 32 89999
Q ss_pred HHHHHHHHHHHHHHhhhhhheecccccchhhhHHH
Q 008264 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 210 (572)
Q Consensus 176 ~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~ 210 (572)
++.+...++|..++|.+.+.+.+..+|+..+.+.+
T Consensus 329 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 329 ALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999999999887778887776643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.12 E-value=1.1e-06 Score=94.53 Aligned_cols=150 Identities=13% Similarity=0.152 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhccCcc----hhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCC
Q 008264 55 ATNIIFIWTAATNFLPIVGALLA----DSYVGRY----RMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESAT 126 (572)
Q Consensus 55 ~~~i~~~~~~~~~~~~~~~G~la----Dr~~Grr----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (572)
.+.+.....++..+..++.+++. ||. ||| +.+..+.++..++.+++++...... ...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------~~~ 401 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMD--------------GGS 401 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT--------------TTC
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCC
Confidence 44454444455555555555553 444 432 4566677777666665544220000 001
Q ss_pred cchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheeccc--cc--
Q 008264 127 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL--GW-- 202 (572)
Q Consensus 127 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--~w-- 202 (572)
..+.+.+++..++.|++.+...+...+++.|..|+ +.|+++.++++...++|..++|.+.+++.+.. +|
T Consensus 402 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~ 474 (524)
T 2xut_A 402 ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK-------AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIV 474 (524)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCT-------TCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 12556677788999999999999999999999998 44899999999999999999999999887632 23
Q ss_pred -------chhhhHHHHHHHHHHHHHHhcCCc
Q 008264 203 -------KVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 203 -------~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
+..|++.+.+.+++.+..+...++
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 475 QTGMSVTAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333666666666555555444443
Done!