BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008265
         (572 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225439759|ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic [Vitis vinifera]
 gi|297741486|emb|CBI32618.3| unnamed protein product [Vitis vinifera]
          Length = 842

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 320/532 (60%), Positives = 405/532 (76%), Gaps = 14/532 (2%)

Query: 40  LASSSSLSSIPTVHS--SQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESV 97
           L +S+S    P + S  S+  LLS VR DL++    Y+D+A+KL +DGR ++F+ + E++
Sbjct: 36  LLTSTSARLSPPISSLRSRHPLLSDVRWDLNN----YSDLATKLVQDGRFDDFSTMAETL 91

Query: 98  VVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157
           ++S   +S+      +E+V++GI   +REGR+ CVV VL+K+++LG+ PLELFDGS  +L
Sbjct: 92  ILSGVELSQL-----VELVSAGISGLLREGRVYCVVEVLRKVDKLGICPLELFDGSTLEL 146

Query: 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217
           L  EC+R+L+ G+VE  V L+E+L+ F  PVK+L E    +++CVNK + NLA+RYACI+
Sbjct: 147 LSKECRRILNCGQVEEVVELIEILDGFHFPVKKLLEPLDFIKICVNKRNPNLAVRYACIL 206

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P A ILFC  + EFGKKRDL SAL A++ASK+ L  PNMY  RT+IDVCG+C  Y KSR 
Sbjct: 207 PHAQILFCTIIHEFGKKRDLGSALTAFEASKQKLIGPNMYCYRTMIDVCGLCSHYQKSRY 266

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           IYE+L +Q +T NIYVFNSLMNVN HDL +T  VYKNMQ LGV ADMASYNILLKACC+A
Sbjct: 267 IYEELLAQKITPNIYVFNSLMNVNVHDLSYTFNVYKNMQNLGVTADMASYNILLKACCVA 326

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G   LAQEIY EV++LE+ G+LKLDVFTYSTI+KVFADAK WQMALK+KEDMLSAGV PN
Sbjct: 327 GRVDLAQEIYREVQNLESNGMLKLDVFTYSTIIKVFADAKLWQMALKIKEDMLSAGVIPN 386

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           T+TWS+LI++CANAG+ EQA+ LF+EML AGCEPNSQC NILL ACVEACQ+DRAFRLF+
Sbjct: 387 TVTWSALISSCANAGITEQAIQLFKEMLLAGCEPNSQCYNILLHACVEACQYDRAFRLFQ 446

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
           SW  S+ Q                +E K +  IT+ PN + NSH+ SF K F F PTTTT
Sbjct: 447 SWKDSRFQEI---SGGTGNGNTVGVELKHQNCITSMPNCLSNSHHLSFSKSFPFTPTTTT 503

Query: 518 YNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           YNILMKAC TDYYR KALM+EM+T GLSPNHISW+ILID CGG+GN+ GA++
Sbjct: 504 YNILMKACGTDYYRAKALMDEMKTAGLSPNHISWSILIDICGGTGNIVGAVR 555



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 99/244 (40%), Gaps = 44/244 (18%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           +++   TII V      +  +  I ED+ S  V  N   +++L++   NA   +  ++++
Sbjct: 351 DVFTYSTIIKVFADAKLWQMALKIKEDMLSAGVIPNTVTWSALISSCANAGITEQAIQLF 410

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLA------------QEI----------YGEV 350
           K M   G   +   YNILL AC  A     A            QEI            E+
Sbjct: 411 KEMLLAGCEPNSQCYNILLHACVEACQYDRAFRLFQSWKDSRFQEISGGTGNGNTVGVEL 470

Query: 351 KH------------------LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           KH                              TY+ ++K      +   AL   ++M +A
Sbjct: 471 KHQNCITSMPNCLSNSHHLSFSKSFPFTPTTTTYNILMKACGTDYYRAKALM--DEMKTA 528

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G++PN I+WS LI+ C   G +  A+ + + M +AG +P+       ++ CVE+     A
Sbjct: 529 GLSPNHISWSILIDICGGTGNIVGAVRILKTMREAGIKPDVVAYTTAIKYCVESKNLKIA 588

Query: 453 FRLF 456
           F LF
Sbjct: 589 FSLF 592



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 7/142 (4%)

Query: 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           +N LM     D      +   M+  G+  +  S++IL+  C   GN V A  I   +K +
Sbjct: 504 YNILMKACGTDYYRAKALMDEMKTAGLSPNHISWSILIDICGGTGNIVGAVRI---LKTM 560

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
              G+ K DV  Y+T +K   ++K  ++A  +  +M    + PN +T+++L+ A +  G 
Sbjct: 561 REAGI-KPDVVAYTTAIKYCVESKNLKIAFSLFAEMKRYQIQPNLVTYNTLLRARSRYGS 619

Query: 414 ---VEQAMHLFEEMLQAGCEPN 432
              V+Q + +++ M +AG + N
Sbjct: 620 LHEVQQCLAIYQHMRKAGYKSN 641



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 2/107 (1%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN      +ID+CG  G+ + +  I + +R   +  ++  + + +   V + +LK    
Sbjct: 531 SPNHISWSILIDICGGTGNIVGAVRILKTMREAGIKPDVVAYTTAIKYCVESKNLKIAFS 590

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
           ++  M++  +  ++ +YN LL+A    G+    Q+     +H+   G
Sbjct: 591 LFAEMKRYQIQPNLVTYNTLLRARSRYGSLHEVQQCLAIYQHMRKAG 637



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 13/142 (9%)

Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
           N+H L F+       +         +YNIL+KAC    +   A+ +  E+K       L 
Sbjct: 485 NSHHLSFS-------KSFPFTPTTTTYNILMKAC--GTDYYRAKALMDEMK----TAGLS 531

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            +  ++S ++ +         A+++ + M  AG+ P+ + +++ I  C  +  ++ A  L
Sbjct: 532 PNHISWSILIDICGGTGNIVGAVRILKTMREAGIKPDVVAYTTAIKYCVESKNLKIAFSL 591

Query: 421 FEEMLQAGCEPNSQCCNILLQA 442
           F EM +   +PN    N LL+A
Sbjct: 592 FAEMKRYQIQPNLVTYNTLLRA 613


>gi|224068636|ref|XP_002326162.1| predicted protein [Populus trichocarpa]
 gi|222833355|gb|EEE71832.1| predicted protein [Populus trichocarpa]
          Length = 828

 Score =  633 bits (1632), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 316/526 (60%), Positives = 386/526 (73%), Gaps = 9/526 (1%)

Query: 49  IPTVHSSQTALLSTV----RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNV 104
           IP VHS    LLST+      + SS  DY+A++ASKLA+DGRL++F MI ESV+ S    
Sbjct: 45  IPAVHSRSPPLLSTIPFRQNHNSSSLLDYHANLASKLAEDGRLQDFVMIAESVIASGVEP 104

Query: 105 SKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR 164
           S F + LS+  VA GI K++++G +DCVV  LKK  ELGV+ L+  DG    LLK E  R
Sbjct: 105 SSFVAALSVGPVAKGISKNLQQGNVDCVVRFLKKTEELGVSTLKFLDGVAIDLLKKEFIR 164

Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP-RADIL 223
           +++ G+VE  V +ME L  F    KEL +   I+++CV+K +  +A+RYA I P    IL
Sbjct: 165 IVNCGDVEQVVYIMETLAGFCFSFKELVDPSYIIKICVDKLNPKMAVRYAAIFPGEGRIL 224

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           FCN + EFG+K  L SAL AYD +K  LS PNMY+ RTIIDVCG+CGDYMKSR IYEDL 
Sbjct: 225 FCNIISEFGRKGHLDSALVAYDEAKHKLSVPNMYLHRTIIDVCGLCGDYMKSRYIYEDLI 284

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
           ++ V  N+YVFNSLMNVNAHDL +T  V+KNMQ LGV AD+ASYNILLKACC+AG   LA
Sbjct: 285 NRKVIPNVYVFNSLMNVNAHDLGYTFSVFKNMQNLGVTADVASYNILLKACCIAGRVDLA 344

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
           ++IY EVK LE+  VLKLDVFTY  IVK+FADAK WQMALK+KEDMLS+GVTPN   WSS
Sbjct: 345 KDIYREVKQLESAEVLKLDVFTYCMIVKIFADAKMWQMALKIKEDMLSSGVTPNMHIWSS 404

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           LI+ACANAGLVEQA+ LFEEML +GC+PNSQCCNILL ACV+ACQ+DRAFRLF+ W  S+
Sbjct: 405 LISACANAGLVEQAIQLFEEMLLSGCKPNSQCCNILLHACVQACQYDRAFRLFQCWKGSE 464

Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
            Q     D+ GN D I   EH  K    N    VPNSH+ +F K+F F PT  TY++LMK
Sbjct: 465 AQEVFHGDHSGNADEI---EHAQKHC-PNMTTIVPNSHHLNFIKKFPFTPTPATYHMLMK 520

Query: 524 ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           AC +DY+R KALM+EM+TVG+SPNHISW+ILID CG SGNV GA+Q
Sbjct: 521 ACGSDYHRAKALMDEMKTVGISPNHISWSILIDICGVSGNVSGAVQ 566



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 47/222 (21%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC- 334
           I ED+ S  VT N+++++SL++   NA  ++  +++++ M   G   +    NILL AC 
Sbjct: 386 IKEDMLSSGVTPNMHIWSSLISACANAGLVEQAIQLFEEMLLSGCKPNSQCCNILLHACV 445

Query: 335 -------------CLAGNTVLAQEIY--------GEVKHLEAK--------------GVL 359
                        C  G+   AQE++         E++H +                  +
Sbjct: 446 QACQYDRAFRLFQCWKGSE--AQEVFHGDHSGNADEIEHAQKHCPNMTTIVPNSHHLNFI 503

Query: 360 KLDVFT-----YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
           K   FT     Y  ++K  A    +  A  + ++M + G++PN I+WS LI+ C  +G V
Sbjct: 504 KKFPFTPTPATYHMLMK--ACGSDYHRAKALMDEMKTVGISPNHISWSILIDICGVSGNV 561

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             A+ + + M  AG EP+       ++ CVE      AF LF
Sbjct: 562 SGAVQILKNMRMAGVEPDVVAYTTAIKVCVETKNLKLAFSLF 603



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 75/142 (52%), Gaps = 7/142 (4%)

Query: 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           ++ LM     D      +   M+ +G+  +  S++IL+  C ++GN   A +I   +K++
Sbjct: 515 YHMLMKACGSDYHRAKALMDEMKTVGISPNHISWSILIDICGVSGNVSGAVQI---LKNM 571

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
              GV + DV  Y+T +KV  + K  ++A  +  +M    + PN +T+++L+ A    G 
Sbjct: 572 RMAGV-EPDVVAYTTAIKVCVETKNLKLAFSLFAEMKRCQINPNLVTYNTLLRARTRYGS 630

Query: 414 ---VEQAMHLFEEMLQAGCEPN 432
              V+Q + ++++M +AG + N
Sbjct: 631 LREVQQCLAIYQDMRKAGYKSN 652



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 13/142 (9%)

Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
           N+H L F       ++K       A+Y++L+KAC    +   A+ +  E+K +     + 
Sbjct: 496 NSHHLNF-------IKKFPFTPTPATYHMLMKAC--GSDYHRAKALMDEMKTVG----IS 542

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            +  ++S ++ +   +     A+++ ++M  AGV P+ + +++ I  C     ++ A  L
Sbjct: 543 PNHISWSILIDICGVSGNVSGAVQILKNMRMAGVEPDVVAYTTAIKVCVETKNLKLAFSL 602

Query: 421 FEEMLQAGCEPNSQCCNILLQA 442
           F EM +    PN    N LL+A
Sbjct: 603 FAEMKRCQINPNLVTYNTLLRA 624



 Score = 42.7 bits (99), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 40/156 (25%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312
           SPN      +ID+CG+ G                            NV+       +++ 
Sbjct: 542 SPNHISWSILIDICGVSG----------------------------NVSG-----AVQIL 568

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           KNM+  GV  D+ +Y   +K C    N  LA  ++ E+K  +    +  ++ TY+T+++ 
Sbjct: 569 KNMRMAGVEPDVVAYTTAIKVCVETKNLKLAFSLFAEMKRCQ----INPNLVTYNTLLRA 624

Query: 373 ---FADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
              +   +  Q  L + +DM  AG   N      LI
Sbjct: 625 RTRYGSLREVQQCLAIYQDMRKAGYKSNDYYLKQLI 660


>gi|39104565|dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]
          Length = 852

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 311/580 (53%), Positives = 405/580 (69%), Gaps = 18/580 (3%)

Query: 3   VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
           +VFGSSS+ ++       R Y      N + K N    TKL P      S S +S+   H
Sbjct: 6   IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNS-SFTKLLPSLPQQHSPSPASVSATH 63

Query: 54  SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
           S  +   + VR       +YYAD ASKLA+DGR+E+ A+I E++    G NV++FASM+ 
Sbjct: 64  SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123

Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
            ++++ GI  ++R+G+I+ VV  LK++ ++G+APL+L D S  KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183

Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
             + LME+L      +KEL + F +V+ CV   +  LAIRYAC++P  ++L C  +  FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL  +N+  NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG   LAQ+IY E K 
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
           LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW  S    +L  D 
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483

Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
               G T   + +++    S+ N  +   NS Y    KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540

Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVR 580



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 136/354 (38%), Gaps = 67/354 (18%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +C  ++ F   +    AL+  D  K    +PN +   ++I  C   G   ++  ++E++ 
Sbjct: 377 YCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEML 436

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           +     N   FN L++  V A        ++++ +   V   + + +I+ K    + N +
Sbjct: 437 ASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPN-I 495

Query: 342 LAQEIYGEV-------KHLEA--KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           L     G +        +++A  +   K    TY+ ++K  A    +    ++ ++M S 
Sbjct: 496 LKNNGPGSLVNRNSNSPYIQASKRFCFKPTTATYNILLK--ACGTDYYRGKELMDEMKSL 553

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G++PN ITWS+LI+ C  +G VE A+ +   M  AG  P+       ++ C E      A
Sbjct: 554 GLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLA 613

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
           F LF                                                  +R+  K
Sbjct: 614 FSLFEEM-----------------------------------------------RRYQIK 626

Query: 513 PTTTTYNILMKA-----CCTDYYRVKALMNEMRTVGLSPN-HISWTILIDACGG 560
           P   TYN L+KA        +  +  A+  +MR  G  PN H    ++ + C G
Sbjct: 627 PNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELIEEWCEG 680


>gi|30679784|ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g02830, chloroplastic; Flags: Precursor
 gi|332003140|gb|AED90523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 852

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 311/580 (53%), Positives = 405/580 (69%), Gaps = 18/580 (3%)

Query: 3   VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
           +VFGSSS+ ++       R Y      N + K N    TKL P      S S +S+   H
Sbjct: 6   IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNS-SFTKLLPSLPQQHSPSPASVSATH 63

Query: 54  SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
           S  +   + VR       +YYAD ASKLA+DGR+E+ A+I E++    G NV++FASM+ 
Sbjct: 64  SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123

Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
            ++++ GI  ++R+G+I+ VV  LK++ ++G+APL+L D S  KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183

Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
             + LME+L      +KEL + F +V+ CV   +  LAIRYAC++P  ++L C  +  FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL  +N+  NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG   LAQ+IY E K 
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
           LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW  S    +L  D 
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483

Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
               G T   + +++    S+ N  +   NS Y    KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540

Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVR 580



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 136/354 (38%), Gaps = 67/354 (18%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +C  ++ F   +    AL+  D  K    +PN +   ++I  C   G   ++  ++E++ 
Sbjct: 377 YCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEML 436

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           +     N   FN L++  V A        ++++ +   V   + + +I+ K    + N +
Sbjct: 437 ASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPN-I 495

Query: 342 LAQEIYGEV-------KHLEA--KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           L     G +        +++A  +   K    TY+ ++K  A    +    ++ ++M S 
Sbjct: 496 LKNNGPGSLVNRNSNSPYIQASKRFCFKPTTATYNILLK--ACGTDYYRGKELMDEMKSL 553

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G++PN ITWS+LI+ C  +G VE A+ +   M  AG  P+       ++ C E      A
Sbjct: 554 GLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLA 613

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
           F LF                                                  +R+  K
Sbjct: 614 FSLFEEM-----------------------------------------------RRYQIK 626

Query: 513 PTTTTYNILMKA-----CCTDYYRVKALMNEMRTVGLSPN-HISWTILIDACGG 560
           P   TYN L+KA        +  +  A+  +MR  G  PN H    ++ + C G
Sbjct: 627 PNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELIEEWCEG 680


>gi|449521499|ref|XP_004167767.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g02830, chloroplastic-like [Cucumis sativus]
          Length = 855

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 327/579 (56%), Positives = 414/579 (71%), Gaps = 17/579 (2%)

Query: 1   MRV--VFGSSSSSSSAIVATQTRLYNHRN-KPNKHPVTKLFPLASSSSLSSIPTVHSSQT 57
           MRV  + GSSS+S +       R Y H + K  K  ++ L P  +    SS  +   S  
Sbjct: 1   MRVFLILGSSSASIAG-----PRRYRHSHCKAPKSSLSNLSPTGTHLPFSSHTSTRHSPP 55

Query: 58  ALLSTVRRDLSSRN-------DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASM 110
           ALLS+V  D++  +        +YA +ASKLA+ G+LE+FAM+VESVVV+    S+F +M
Sbjct: 56  ALLSSVELDIAGASSGGRIPIQHYAGVASKLAEGGKLEDFAMVVESVVVAGVEPSQFGAM 115

Query: 111 LSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE 170
           L++E+VA GI + +REG++  VV VL+K+ ELG++ LEL D    + L+ +C+R+  SGE
Sbjct: 116 LAVELVAKGISRCLREGKVWSVVQVLRKVEELGISVLELCDEPAVESLRRDCRRMAKSGE 175

Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230
           +E  V LMEVL  F   V+E+ +   +++LCV+  +  +AIRYA I+P ADILFC  + E
Sbjct: 176 LEELVELMEVLSGFGFSVREMMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINE 235

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           FGKKRDL SA  AY  SK +++  NMYI RTIIDVCG+CGDY KSR IY+DL +QNVT N
Sbjct: 236 FGKKRDLKSAYIAYTESKANMNGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVTPN 295

Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           I+VFNSLMNVNAHDL +T ++YKNMQ LGV ADMASYNILLKACCLAG   LAQ+IY EV
Sbjct: 296 IFVFNSLMNVNAHDLNYTFQLYKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREV 355

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           KHLE  GVLKLDVFTYSTIVKVFADAK W+MAL+VKEDM SAGV+PN +TWSSLI++CAN
Sbjct: 356 KHLETTGVLKLDVFTYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCAN 415

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
           +GLVE A+ LFEEM+ AGCEPN+QCCN LL ACVE  QFDRAFRLFRSW   + ++  G 
Sbjct: 416 SGLVELAIQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSW--KEKELWDGI 473

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
           +   +TD   + +   +   T  PN   + H  SF    +FKPT TTYNILMKAC TDYY
Sbjct: 474 ERKSSTDNNLDADSTSQLCTTKMPNAPSHVHQISFVGNLAFKPTITTYNILMKACGTDYY 533

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             KALM EM++VGL+PNHISW+IL+D CG S +VE A+Q
Sbjct: 534 HAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQ 572



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 90/217 (41%), Gaps = 10/217 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   V+ F   +    ALR  +  +    SPNM    ++I  C   G    +  ++E++ 
Sbjct: 371 YSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCANSGLVELAIQLFEEMV 430

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL----GVMADMASYNILLKACCLA 337
           S     N    N+L++  V          ++++ ++     G+    ++ N L       
Sbjct: 431 SAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSWKEKELWDGIERKSSTDNNLDADSTSQ 490

Query: 338 GNTVLAQEIYGEVKHLEAKGVL--KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             T         V  +   G L  K  + TY+ ++K      +   AL   E+M S G+T
Sbjct: 491 LCTTKMPNAPSHVHQISFVGNLAFKPTITTYNILMKACGTDYYHAKALM--EEMKSVGLT 548

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           PN I+WS L++ C  +  VE A+ +   M  AG +P+
Sbjct: 549 PNHISWSILVDICGRSHDVESAVQILTTMRMAGVDPD 585



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 81/186 (43%), Gaps = 40/186 (21%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P +     ++  CG   DY  ++A+ E+++S  +T N   ++ L+++   +HD++  +++
Sbjct: 516 PTITTYNILMKACGT--DYYHAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQI 573

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M+  GV  D+ +Y   +K        VL                             
Sbjct: 574 LTTMRMAGVDPDVVAYTTAIKVSIPLAVLVLKXN-------------------------- 607

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL---VEQAMHLFEEMLQAG 428
                  W++A  + E+M    + PN +T+S+L+ A +  G    V+Q + ++++M ++G
Sbjct: 608 -------WKLAFSLFEEMKGFEIQPNLVTYSTLLRARSTYGSLHEVQQCLAIYQDMRKSG 660

Query: 429 CEPNSQ 434
            + N  
Sbjct: 661 FKSNDH 666


>gi|449448705|ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 329/581 (56%), Positives = 417/581 (71%), Gaps = 21/581 (3%)

Query: 1   MRV--VFGSSSSSSSAIVATQTRLYNHRN-KPNKHPVTKLFPLASSSSLSSIPTVHSSQT 57
           MRV  + GSSS+S +       R Y H + K  K  ++ L P  +    SS  +   S  
Sbjct: 1   MRVFLILGSSSASIAG-----PRRYRHSHCKAPKSSLSNLSPTGTHLPFSSHTSTRHSPP 55

Query: 58  ALLSTVRRDLSSRN-------DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASM 110
           ALLS+V  D++  +        +YA +ASKLA+ G+LE+FAM+VESVVV+    S+F +M
Sbjct: 56  ALLSSVELDIAGASSGGRIPIQHYAGVASKLAEGGKLEDFAMVVESVVVAGVEPSQFGAM 115

Query: 111 LSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE 170
           L++E+VA GI + +REG++  VV VL+K+ ELG++ LEL D    + L+ +C+R+  SGE
Sbjct: 116 LAVELVAKGISRCLREGKVWSVVQVLRKVEELGISVLELCDEPAVESLRRDCRRMAKSGE 175

Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230
           +E  V LMEVL  F   V+E+ +   +++LCV+  +  +AIRYA I+P ADILFC  + E
Sbjct: 176 LEELVELMEVLSGFGFSVREMMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINE 235

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           FGKKRDL SA  AY  SK +++  NMYI RTIIDVCG+CGDY KSR IY+DL +QNV  N
Sbjct: 236 FGKKRDLKSAYIAYTESKANMNGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVIPN 295

Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           I+VFNSLMNVNAHDL +T ++YKNMQ LGV ADMASYNILLKACCLAG   LAQ+IY EV
Sbjct: 296 IFVFNSLMNVNAHDLNYTFQLYKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREV 355

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           KHLE  GVLKLDVFTYSTIVKVFADAK W+MAL+VKEDM SAGV+PN +TWSSLI++CAN
Sbjct: 356 KHLETTGVLKLDVFTYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCAN 415

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
           +GLVE A+ LFEEM+ AGCEPN+QCCN LL ACVE  QFDRAFRLFRSW   + ++  G 
Sbjct: 416 SGLVELAIQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSW--KEKELWDGI 473

Query: 471 DYDGNTDRISNMEHKDKQSITNT--PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
           +   +TD  +N++      + NT  PN   + H  SF   F+FKPT TTYNILMKAC TD
Sbjct: 474 ERKSSTD--NNLDADSTSQLCNTKMPNAPSHVHQISFVGNFAFKPTITTYNILMKACGTD 531

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           YY  KALM EM++VGL+PNHISW+IL+D CG S +VE A+Q
Sbjct: 532 YYHAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQ 572



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 101/246 (41%), Gaps = 20/246 (8%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   V+ F   +    ALR  +  +    SPNM    ++I  C   G    +  ++E++ 
Sbjct: 371 YSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCANSGLVELAIQLFEEMV 430

Query: 284 SQNVTLNIYVFNSLMNV----NAHDLKFTL-------EVYKNMQKLGVMADMASYNILLK 332
           S     N    N+L++        D  F L       E++  +++     +    +   +
Sbjct: 431 SAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSWKEKELWDGIERKSSTDNNLDADSTSQ 490

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKG--VLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
            C    NT +       V  +   G    K  + TY+ ++K      +   AL   E+M 
Sbjct: 491 LC----NTKMPNAP-SHVHQISFVGNFAFKPTITTYNILMKACGTDYYHAKALM--EEMK 543

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
           S G+TPN I+WS L++ C  +  VE A+ +   M  AG +P+       ++ CVE   + 
Sbjct: 544 SVGLTPNHISWSILVDICGRSHDVESAVQILTTMRMAGVDPDVVAYTTAIKVCVEGKNWK 603

Query: 451 RAFRLF 456
            AF LF
Sbjct: 604 LAFSLF 609



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 7/147 (4%)

Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           I  +N LM     D      + + M+ +G+  +  S++IL+  C  + +   A +I   +
Sbjct: 518 ITTYNILMKACGTDYYHAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQI---L 574

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
             +   GV   DV  Y+T +KV  + K W++A  + E+M    + PN +T+S+L+ A + 
Sbjct: 575 TTMRMAGV-DPDVVAYTTAIKVCVEGKNWKLAFSLFEEMKRFEIQPNLVTYSTLLRARST 633

Query: 411 AGL---VEQAMHLFEEMLQAGCEPNSQ 434
            G    V+Q + ++++M ++G + N  
Sbjct: 634 YGSLHEVQQCLAIYQDMRKSGFKSNDH 660


>gi|7413558|emb|CAB86037.1| putative protein [Arabidopsis thaliana]
          Length = 798

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 305/580 (52%), Positives = 395/580 (68%), Gaps = 32/580 (5%)

Query: 3   VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
           +VFGSSS+ ++       R Y      N + K N    TKL P      S S +S+   H
Sbjct: 6   IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63

Query: 54  SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
           S  +   + VR       +YYAD ASKLA+DGR+E+ A+I E++    G NV++FASM+ 
Sbjct: 64  SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123

Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
            ++++ GI  ++R+G+I+ VV  LK++ ++G+APL+L D S  KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183

Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
             + LME+L      +KEL + F +V+ CV   +  LAIR               +  FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIR--------------IIHGFG 229

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL  +N+  NIY
Sbjct: 230 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 289

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG   LAQ+IY E K 
Sbjct: 290 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 349

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 350 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 409

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
           LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW  S    +L  D 
Sbjct: 410 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 469

Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
               G T   + +++    S+ N  +   NS Y    KRF FKPTT TYNIL+KAC TDY
Sbjct: 470 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 526

Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++
Sbjct: 527 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVR 566



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 100/220 (45%), Gaps = 14/220 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +C  ++ F   +    AL+  D  K    +PN +   ++I  C   G   ++  ++E++ 
Sbjct: 363 YCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEML 422

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           +     N   FN L++  V A        ++++ +   V   + + +I+ K    + N +
Sbjct: 423 ASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPN-I 481

Query: 342 LAQEIYGEV-------KHLEA--KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           L     G +        +++A  +   K    TY+ ++K  A    +    ++ ++M S 
Sbjct: 482 LKNNGPGSLVNRNSNSPYIQASKRFCFKPTTATYNILLK--ACGTDYYRGKELMDEMKSL 539

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           G++PN ITWS+LI+ C  +G VE A+ +   M  AG  P+
Sbjct: 540 GLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPD 579


>gi|255568444|ref|XP_002525196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535493|gb|EEF37162.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 786

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/462 (58%), Positives = 340/462 (73%)

Query: 108 ASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLD 167
           +S L +  +A GI K++RE  +D VV  L   ++LG+ P +LFD +   LLK EC R+++
Sbjct: 41  SSGLHMIALAKGISKNLRERNVDSVVDALNTADQLGLPPSQLFDAASMDLLKTECLRIVN 100

Query: 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227
            G +E  + LME L  +   +KEL E  R+++LCV++ + +LA+RYA + P   IL C+ 
Sbjct: 101 FGRLEDIILLMETLAGYSFSIKELVEPSRVIKLCVHQRNPHLAVRYARLFPHEGILMCSI 160

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           V++FGKK DL SAL AY+A  +H + P+MY+ R +IDVCG+CGDYM+SR I+ED+ SQ V
Sbjct: 161 VKQFGKKGDLDSALAAYEAYMQHSTVPDMYLYRALIDVCGLCGDYMQSRYIFEDIVSQKV 220

Query: 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
             NI+VFNSLMNVNAHDL +TL VYK MQ LGV ADM SYNILLK+C LAG   LAQ+IY
Sbjct: 221 IPNIFVFNSLMNVNAHDLGYTLHVYKKMQNLGVTADMTSYNILLKSCSLAGKVDLAQDIY 280

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            E K LE  G+LKLD FTY TI+K+FADAK WQ+ALK+KEDMLS+GVTPNT TWSSLI+A
Sbjct: 281 REAKQLELAGLLKLDDFTYCTIIKIFADAKLWQLALKIKEDMLSSGVTPNTFTWSSLISA 340

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
            ANAGLV+QA+ LFEEML AGC PNS CCNILL ACVEACQ+DRAFRLF +W  S+ Q  
Sbjct: 341 SANAGLVDQAIKLFEEMLLAGCVPNSHCCNILLHACVEACQYDRAFRLFNAWKGSEIQNT 400

Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
              DY+   D IS+  H  +  I   PN   NS + SF K+F F P++ TYN LMKAC +
Sbjct: 401 FTTDYNCPVDDISSAMHACEDYIITVPNLASNSLHLSFLKKFPFTPSSATYNTLMKACGS 460

Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           DY R KALM+EM+ VGLSPNHISW+ILID CG SGN+EGA+Q
Sbjct: 461 DYNRAKALMDEMQAVGLSPNHISWSILIDICGSSGNMEGAIQ 502



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 10/158 (6%)

Query: 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           +N+LM     D      +   MQ +G+  +  S++IL+  C  +GN   A +I   +K++
Sbjct: 451 YNTLMKACGSDYNRAKALMDEMQAVGLSPNHISWSILIDICGSSGNMEGAIQI---LKNM 507

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
              G+ + DV  Y+T +KV  ++K  +MA  +  +M    + PN +T+ +L+ A    G 
Sbjct: 508 RMAGI-EPDVIAYTTAIKVSVESKNLKMAFSLFAEMKRYQLKPNLVTYDTLLRARTRYGS 566

Query: 414 ---VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
              V+Q + ++++M +AG + N    N L Q   E C+
Sbjct: 567 LKEVQQCLAIYQDMRKAGYKSND---NYLKQLIEEWCE 601



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 99/241 (41%), Gaps = 47/241 (19%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           TII +      +  +  I ED+ S  VT N + ++SL++   NA  +   +++++ M   
Sbjct: 301 TIIKIFADAKLWQLALKIKEDMLSSGVTPNTFTWSSLISASANAGLVDQAIKLFEEMLLA 360

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV--------------- 363
           G + +    NILL AC  A     A  ++   K  E +     D                
Sbjct: 361 GCVPNSHCCNILLHACVEACQYDRAFRLFNAWKGSEIQNTFTTDYNCPVDDISSAMHACE 420

Query: 364 ----------------------------FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
                                        TY+T++K  A    +  A  + ++M + G++
Sbjct: 421 DYIITVPNLASNSLHLSFLKKFPFTPSSATYNTLMK--ACGSDYNRAKALMDEMQAVGLS 478

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN I+WS LI+ C ++G +E A+ + + M  AG EP+       ++  VE+     AF L
Sbjct: 479 PNHISWSILIDICGSSGNMEGAIQILKNMRMAGIEPDVIAYTTAIKVSVESKNLKMAFSL 538

Query: 456 F 456
           F
Sbjct: 539 F 539



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           ++K       A+YN L+KAC    N   A+ +  E   ++A G L  +  ++S ++ +  
Sbjct: 439 LKKFPFTPSSATYNTLMKACGSDYNR--AKALMDE---MQAVG-LSPNHISWSILIDICG 492

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            +   + A+++ ++M  AG+ P+ I +++ I     +  ++ A  LF EM +   +PN  
Sbjct: 493 SSGNMEGAIQILKNMRMAGIEPDVIAYTTAIKVSVESKNLKMAFSLFAEMKRYQLKPNLV 552

Query: 435 CCNILLQA 442
             + LL+A
Sbjct: 553 TYDTLLRA 560


>gi|356572391|ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic-like [Glycine max]
          Length = 811

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 293/569 (51%), Positives = 377/569 (66%), Gaps = 41/569 (7%)

Query: 3   VVFGSSSSSSSAIVATQTRLYNHRNKPNKHP-VTKLFPLASSSSLSSIPTVHSSQTALLS 61
           V+ GSS  +  +  +T    + H  KP   P + KL P +S+ ++S          AL  
Sbjct: 5   VILGSSVVTPFSSSSTPHHQHRHPIKPPHKPSLPKLAPFSSNWNIS---------CAL-- 53

Query: 62  TVRRDLSSRNDYYADMASKLAKDGRL-EEFAMIVESVVVSEGNVSKFASMLSLEMVASGI 120
                        A +A     D +L +EF ++ E  + S         ++  E++A  +
Sbjct: 54  ------------QAPLALSHCADSKLVQEFEVVFEDFIDS--------GVVDAELLAKVV 93

Query: 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV 180
           +  IR  ++  V+  L K+    ++     +GS   ++  EC RL+    VE  V LMEV
Sbjct: 94  LLGIRGKKVRSVIHALNKVQGRRISLSTHLNGS--DIIAKECCRLVTCSHVEEAVELMEV 151

Query: 181 LEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSA 240
           L  F++ ++EL +   I++ CV   +  LA+RYAC++P A ILFCN + EFGK+RDLVSA
Sbjct: 152 LARFQISIRELVQPSDIIKRCVLSRNPILAVRYACLLPHAHILFCNIISEFGKRRDLVSA 211

Query: 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300
           L+AY+ASKKHL++PNMYI R  ID CG+C DYMKSR IYEDL +Q +T NIYVFNSLMNV
Sbjct: 212 LKAYEASKKHLNTPNMYIYRATIDTCGLCRDYMKSRYIYEDLLNQKITPNIYVFNSLMNV 271

Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
           N+HDL +TL +Y+NMQ LG+  DM SYNILLKACC+AG   LAQ+IY E+KHLE+ G LK
Sbjct: 272 NSHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRELKHLESVGQLK 331

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
           LDVFTYSTI+KVFAD K WQMALK+K+DMLSAGV+ N + WSSLINACA+AGLVEQA+ L
Sbjct: 332 LDVFTYSTIIKVFADVKLWQMALKIKQDMLSAGVSLNIVAWSSLINACAHAGLVEQAIQL 391

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
           FEEML AGCEPN+QC NI+L ACVEA Q+DRAFR F SW   K   + GE Y+      S
Sbjct: 392 FEEMLLAGCEPNTQCFNIILNACVEAYQYDRAFRFFHSWKGKKMLGSSGEGYN------S 445

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMR 540
           N+       +T+ PN + NSH  +F +RF F PTTTTYNIL+KAC TDYY  KAL+ EM 
Sbjct: 446 NIGQGHMHDVTSIPNGISNSHILNFAERFPFTPTTTTYNILLKACGTDYYHAKALIKEME 505

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQ 569
           TVGLSPN ISW+ILID CG S NVEGA++
Sbjct: 506 TVGLSPNQISWSILIDICGASSNVEGAIE 534



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 7/142 (4%)

Query: 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           +N L+     D      + K M+ +G+  +  S++IL+  C  + N   A EI   +K +
Sbjct: 483 YNILLKACGTDYYHAKALIKEMETVGLSPNQISWSILIDICGASSNVEGAIEI---LKTM 539

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
              G+ K DV  Y+T +KV  ++K +  AL + E+M    + PN +T+++L+ A +  G 
Sbjct: 540 GDAGI-KPDVIAYTTAIKVCVESKNFMQALTLYEEMKCYQIRPNWVTYNTLLKARSKYGF 598

Query: 414 ---VEQAMHLFEEMLQAGCEPN 432
              V+Q + ++++M +AG +PN
Sbjct: 599 LHEVQQCLAIYQDMRKAGYKPN 620



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 124/295 (42%), Gaps = 57/295 (19%)

Query: 204 KPDV---NLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICR 260
           KPD+   N+ ++  C+  R D L  +  RE  K  + V  L+            +++   
Sbjct: 292 KPDMTSYNILLKACCVAGRVD-LAQDIYREL-KHLESVGQLKL-----------DVFTYS 338

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKL 318
           TII V      +  +  I +D+ S  V+LNI  ++SL+N  AH   ++  +++++ M   
Sbjct: 339 TIIKVFADVKLWQMALKIKQDMLSAGVSLNIVAWSSLINACAHAGLVEQAIQLFEEMLLA 398

Query: 319 GVMADMASYNILLKACCLA--------------GNTVLAQEIYG---------------- 348
           G   +   +NI+L AC  A              G  +L     G                
Sbjct: 399 GCEPNTQCFNIILNACVEAYQYDRAFRFFHSWKGKKMLGSSGEGYNSNIGQGHMHDVTSI 458

Query: 349 -------EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
                   + +   +        TY+ ++K      +   AL +KE M + G++PN I+W
Sbjct: 459 PNGISNSHILNFAERFPFTPTTTTYNILLKACGTDYYHAKAL-IKE-METVGLSPNQISW 516

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           S LI+ C  +  VE A+ + + M  AG +P+       ++ CVE+  F +A  L+
Sbjct: 517 SILIDICGASSNVEGAIEILKTMGDAGIKPDVIAYTTAIKVCVESKNFMQALTLY 571


>gi|357510555|ref|XP_003625566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500581|gb|AES81784.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 829

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/504 (54%), Positives = 357/504 (70%), Gaps = 21/504 (4%)

Query: 66  DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR 125
           +LS RN+  + + + L     L+EF  ++   + S+ +V         E++A+ ++  I+
Sbjct: 40  NLSPRNNSTSLLQTPLI----LKEFETVLHGELDSDVDV---------ELLANAVLIGIQ 86

Query: 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185
           +  +  V+  L K+   G++ + L        + NEC  ++  G +E  V LMEVL  F+
Sbjct: 87  DRNVRTVIDSLNKVE--GLSEISLSTHLDASAIANECCHMVTCGHIEEAVELMEVLSRFQ 144

Query: 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245
           L + +L +   I++ C+      LA+RYA ++P+A +LFC+ + EF K+RDLVSAL+AYD
Sbjct: 145 LSIAKLVQPSDIIKRCILSRKPTLAVRYASLLPQAPVLFCSIISEFSKRRDLVSALKAYD 204

Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305
           A KK+L  PNMYI R IID CG+CGD+MKSR IYEDL +Q +T NIYVFNSLMNVNAHDL
Sbjct: 205 ALKKNLKGPNMYIYRAIIDACGLCGDFMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDL 264

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
            ++L +Y+NMQKLG+  DMASYNILLKACC+AG   +AQ++Y ++KHLE+ G LKLDVFT
Sbjct: 265 SYSLNLYQNMQKLGLKPDMASYNILLKACCVAGRVDVAQDMYRDLKHLESVGQLKLDVFT 324

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           YSTI+KVFADAK WQMALK+K DMLSAGV+ NTI WSSLINACA+AGLVEQA+ LFEEML
Sbjct: 325 YSTIIKVFADAKLWQMALKIKRDMLSAGVSLNTIAWSSLINACAHAGLVEQAIQLFEEML 384

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
            AGCEPN+QC NI+L ACVE CQ+DRAFRLF SW  SK  V L E  +      SN E  
Sbjct: 385 LAGCEPNTQCFNIILHACVEGCQYDRAFRLFHSWKGSKMLVPLDESCN------SNSEQG 438

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLS 545
              ++T  P  + +SH  SF +RF F PTTTTYNIL+KAC T+YY  KAL+NEMRTVGLS
Sbjct: 439 GMHNVTTVPTGISSSHILSFTERFPFTPTTTTYNILLKACGTNYYHAKALINEMRTVGLS 498

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
           PN ISW+ILI+ CG S NV+G ++
Sbjct: 499 PNQISWSILINICGASENVDGVIE 522



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 122/301 (40%), Gaps = 67/301 (22%)

Query: 204 KPDV---NLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-----N 255
           KPD+   N+ ++  C+  R D+    +       RDL           KHL S      +
Sbjct: 280 KPDMASYNILLKACCVAGRVDVAQDMY-------RDL-----------KHLESVGQLKLD 321

Query: 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYK 313
           ++   TII V      +  +  I  D+ S  V+LN   ++SL+N  AH   ++  +++++
Sbjct: 322 VFTYSTIIKVFADAKLWQMALKIKRDMLSAGVSLNTIAWSSLINACAHAGLVEQAIQLFE 381

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----------- 362
            M   G   +   +NI+L AC        A  ++   K   +K ++ LD           
Sbjct: 382 EMLLAGCEPNTQCFNIILHACVEGCQYDRAFRLFHSWKG--SKMLVPLDESCNSNSEQGG 439

Query: 363 ---------------VFTYSTIVKVFADAKWWQMALK-----------VKEDMLSAGVTP 396
                          + +++           + + LK           +  +M + G++P
Sbjct: 440 MHNVTTVPTGISSSHILSFTERFPFTPTTTTYNILLKACGTNYYHAKALINEMRTVGLSP 499

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N I+WS LIN C  +  V+  + +   M+ AG +P+       ++ CVE+  F +A  L+
Sbjct: 500 NQISWSILINICGASENVDGVIEILRTMVDAGIKPDVISYTTAIKVCVESKNFTQALTLY 559

Query: 457 R 457
           R
Sbjct: 560 R 560



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 7/121 (5%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M+ +G+  +  S++IL+  C  + N     EI   ++ +   G+ K DV +Y+T +KV  
Sbjct: 492 MRTVGLSPNQISWSILINICGASENVDGVIEI---LRTMVDAGI-KPDVISYTTAIKVCV 547

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL---VEQAMHLFEEMLQAGCEP 431
           ++K +  AL +  +M S G  PN +T+++L+ A +  G    V+Q + ++++M +AG + 
Sbjct: 548 ESKNFTQALTLYREMKSYGTHPNLVTYNTLLRARSKYGSLREVQQGLAIYQDMRKAGYKS 607

Query: 432 N 432
           N
Sbjct: 608 N 608



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 6/116 (5%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YNILLKAC    N   A+ +  E++ +     L  +  ++S ++ +   ++     +++ 
Sbjct: 471 YNILLKAC--GTNYYHAKALINEMRTVG----LSPNQISWSILINICGASENVDGVIEIL 524

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
             M+ AG+ P+ I++++ I  C  +    QA+ L+ EM   G  PN    N LL+A
Sbjct: 525 RTMVDAGIKPDVISYTTAIKVCVESKNFTQALTLYREMKSYGTHPNLVTYNTLLRA 580


>gi|115452331|ref|NP_001049766.1| Os03g0284900 [Oryza sativa Japonica Group]
 gi|108707551|gb|ABF95346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|108707553|gb|ABF95348.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548237|dbj|BAF11680.1| Os03g0284900 [Oryza sativa Japonica Group]
 gi|215686909|dbj|BAG90779.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/538 (42%), Positives = 326/538 (60%), Gaps = 25/538 (4%)

Query: 33  PVTKLFPLASSSSLSSIPTVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAM 92
           P ++  P  S  + +++P        LLS V RD ++   YY+ +AS L   GRL EF +
Sbjct: 34  PPSRCRPSPSPKAKAALP--------LLSDVGRDPTAIK-YYSRVASNLVGAGRLREFLL 84

Query: 93  IVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152
             E +  + G+   F   +S  +++ G+  ++R+  +  V+  L+    +G+    + D 
Sbjct: 85  AAEGLRAASGDAG-FEGRISRRLLSRGVAAALRDQGLPHVLEFLRDAGRVGIRAAVMLDA 143

Query: 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212
             +  +   C+ LL    +  FV  +E L +    V+ + +   ++++ V K D N+AIR
Sbjct: 144 DAYDTVAAACRLLLAERSMTEFVEAVEALAQCGFFVQGIVDPMDVLKIFVKKRDPNMAIR 203

Query: 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
           YA I P++ +L CN +  FGK+++L  AL  + A K      NM+ CR+IID+CG CG  
Sbjct: 204 YARIFPQSQLLLCNTMEAFGKRKELKHALTVFGALKDQFGGINMFACRSIIDICGHCGSS 263

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +++R I+E L +  +T N+YVFNSLMNVNAH   +   VYK+MQ LGV  D+ SYNILLK
Sbjct: 264 VQARIIFEGLLADKITPNVYVFNSLMNVNAHSFSYNFSVYKHMQNLGVPPDLTSYNILLK 323

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
            CC A    LAQEIY E+K  E  G+LKLDVFTYST++KVFADAK W++A  +K+DM SA
Sbjct: 324 TCCNAKEYKLAQEIYEEIKKKEQNGLLKLDVFTYSTMMKVFADAKMWKLASDIKQDMQSA 383

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           GV  N +TWSSLINA AN+GLV++A+ + EEM + GC+P + C NI+L  CV++CQ+DRA
Sbjct: 384 GVRLNLVTWSSLINAYANSGLVDRAIEILEEMTRDGCQPTAPCFNIILTGCVKSCQYDRA 443

Query: 453 FRLFRSWTLSKTQVALGEDYDG-NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           FRLF  W     +++L  +  G   D  S  E  +  S ++T   VP            F
Sbjct: 444 FRLFYDWKEYGVKISLSPEQKGCFGDNFSYCE--EHTSNSSTLLVVP------------F 489

Query: 512 KPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +PT TTYNILMKAC T+  R K++MNEMR  GL P+ ISW+IL+D  G S N +GA+Q
Sbjct: 490 RPTVTTYNILMKACGTNGERAKSVMNEMRRNGLCPDLISWSILMDIYGSSQNRDGAIQ 547



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 94/199 (47%), Gaps = 19/199 (9%)

Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           +  +N LM     + +    V   M++ G+  D+ S++IL+    + G++         +
Sbjct: 493 VTTYNILMKACGTNGERAKSVMNEMRRNGLCPDLISWSILMD---IYGSSQNRDGAIQAL 549

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + ++  G +KL+V  Y+  +K   + K  ++AL + E+M +  + PN +T+ +L+ A   
Sbjct: 550 RRMQRVG-MKLNVTAYTVAIKACVENKDLKLALHLFEEMKAHQLKPNLVTYKTLLTARNK 608

Query: 411 AGL---VEQAMHLFEEMLQAGCEPNSQCC-NILLQAC----------VEACQFDRAFRLF 456
            G    V+Q + +++EM +AG + N     N++++ C           E  Q D+    F
Sbjct: 609 YGSLQEVQQCLAIYQEMRKAGYQANDYYLKNLIVEWCEGVLSSGNGNREYYQLDQRKESF 668

Query: 457 RSWTLSKTQVALGEDYDGN 475
           +   L K    L +D D N
Sbjct: 669 K-LVLEKVTTFLQKDVDQN 686


>gi|218192576|gb|EEC75003.1| hypothetical protein OsI_11066 [Oryza sativa Indica Group]
          Length = 668

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/538 (42%), Positives = 326/538 (60%), Gaps = 25/538 (4%)

Query: 33  PVTKLFPLASSSSLSSIPTVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAM 92
           P ++  P  S  + +++P        LLS V RD ++   YY+ +AS L   GRL EF +
Sbjct: 34  PPSRCRPSPSPKAKAALP--------LLSDVGRDPTAIK-YYSRVASNLVGAGRLREFLL 84

Query: 93  IVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152
             E +  + G+   F   +S  +++ G+  ++R+  +  V+  L+    +G+    + D 
Sbjct: 85  AAEGLRAASGDAG-FEGRISRRLLSRGVAAALRDQGLPHVLEFLRDAGRVGIRAAVMLDA 143

Query: 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212
             +  +   C+ LL    +  FV  +E L +    V+ + +   ++++ V K D N+AIR
Sbjct: 144 DAYDTVAAACRLLLAERSMTEFVEAVEALAQCGFFVQGIVDPMDVLKIFVKKRDPNMAIR 203

Query: 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
           YA I P++ +L CN +  FGK+++L  AL  + A K      NM+ CR+IID+CG CG  
Sbjct: 204 YARIFPQSQLLLCNTMEAFGKRKELKHALTVFGALKDQFGGINMFACRSIIDICGHCGSS 263

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +++R I+E L +  +T N+YVFNSLMNVNAH   +   VYK+MQ LGV  D+ SYNILLK
Sbjct: 264 VQARIIFEGLLADKITPNVYVFNSLMNVNAHSFSYNFSVYKHMQNLGVPPDLTSYNILLK 323

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
            CC A    LAQEIY E+K  E  G+LKLDVFTYST++KVFADAK W++A  +K+DM SA
Sbjct: 324 TCCNAKEYKLAQEIYEEIKKKEQNGLLKLDVFTYSTMMKVFADAKMWKLASDIKQDMQSA 383

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           GV  N +TWSSLINA AN+GLV++A+ + EEM + GC+P + C NI+L  CV++CQ+DRA
Sbjct: 384 GVRLNLVTWSSLINAYANSGLVDRAIEILEEMTRDGCQPTAPCFNIILTGCVKSCQYDRA 443

Query: 453 FRLFRSWTLSKTQVALGEDYDG-NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           FRLF  W     +++L  +  G   D  S  E  +  S ++T   VP            F
Sbjct: 444 FRLFYDWKEYGVKISLSPEQKGCFGDNFSYCE--EHTSNSSTLLVVP------------F 489

Query: 512 KPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +PT TTYNILMKAC T+  R K++MNEMR  GL P+ ISW+IL+D  G S N +GA+Q
Sbjct: 490 RPTVTTYNILMKACGTNGERAKSVMNEMRRNGLCPDLISWSILMDIYGSSQNRDGAIQ 547



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 38/237 (16%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           I +D++S  V LN+  ++SL+N  A+   +   +E+ + M + G       +NI+L  C 
Sbjct: 376 IKQDMQSAGVRLNLVTWSSLINAYANSGLVDRAIEILEEMTRDGCQPTAPCFNIILTGCV 435

Query: 336 LAGNTVLAQEIYGEVKHL--------EAKGVL----------------------KLDVFT 365
            +     A  ++ + K          E KG                        +  V T
Sbjct: 436 KSCQYDRAFRLFYDWKEYGVKISLSPEQKGCFGDNFSYCEEHTSNSSTLLVVPFRPTVTT 495

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+ ++K  A     + A  V  +M   G+ P+ I+WS L++   ++   + A+     M 
Sbjct: 496 YNILMK--ACGTNGERAKSVMNEMRRNGLCPDLISWSILMDIYGSSQNRDGAIQALRRMQ 553

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED----YDGNTDR 478
           + G + N     + ++ACVE      A  LF      + +  LG++    YD   D+
Sbjct: 554 RVGMKLNVTAYTVAIKACVENKDLKLALHLFEEMKAHQLKPNLGQESHDSYDQQVDQ 610


>gi|27476073|gb|AAO17004.1| Hypothetical protein [Oryza sativa Japonica Group]
          Length = 572

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/538 (42%), Positives = 326/538 (60%), Gaps = 25/538 (4%)

Query: 33  PVTKLFPLASSSSLSSIPTVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAM 92
           P ++  P  S  + +++P        LLS V RD ++   YY+ +AS L   GRL EF +
Sbjct: 34  PPSRCRPSPSPKAKAALP--------LLSDVGRDPTAIK-YYSRVASNLVGAGRLREFLL 84

Query: 93  IVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152
             E +  + G+   F   +S  +++ G+  ++R+  +  V+  L+    +G+    + D 
Sbjct: 85  AAEGLRAASGDAG-FEGRISRRLLSRGVAAALRDQGLPHVLEFLRDAGRVGIRAAVMLDA 143

Query: 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212
             +  +   C+ LL    +  FV  +E L +    V+ + +   ++++ V K D N+AIR
Sbjct: 144 DAYDTVAAACRLLLAERSMTEFVEAVEALAQCGFFVQGIVDPMDVLKIFVKKRDPNMAIR 203

Query: 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
           YA I P++ +L CN +  FGK+++L  AL  + A K      NM+ CR+IID+CG CG  
Sbjct: 204 YARIFPQSQLLLCNTMEAFGKRKELKHALTVFGALKDQFGGINMFACRSIIDICGHCGSS 263

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +++R I+E L +  +T N+YVFNSLMNVNAH   +   VYK+MQ LGV  D+ SYNILLK
Sbjct: 264 VQARIIFEGLLADKITPNVYVFNSLMNVNAHSFSYNFSVYKHMQNLGVPPDLTSYNILLK 323

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
            CC A    LAQEIY E+K  E  G+LKLDVFTYST++KVFADAK W++A  +K+DM SA
Sbjct: 324 TCCNAKEYKLAQEIYEEIKKKEQNGLLKLDVFTYSTMMKVFADAKMWKLASDIKQDMQSA 383

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           GV  N +TWSSLINA AN+GLV++A+ + EEM + GC+P + C NI+L  CV++CQ+DRA
Sbjct: 384 GVRLNLVTWSSLINAYANSGLVDRAIEILEEMTRDGCQPTAPCFNIILTGCVKSCQYDRA 443

Query: 453 FRLFRSWTLSKTQVALGEDYDG-NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           FRLF  W     +++L  +  G   D  S  E  +  S ++T   VP            F
Sbjct: 444 FRLFYDWKEYGVKISLSPEQKGCFGDNFSYCE--EHTSNSSTLLVVP------------F 489

Query: 512 KPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +PT TTYNILMKAC T+  R K++MNEMR  GL P+ ISW+IL+D  G S N +GA+Q
Sbjct: 490 RPTVTTYNILMKACGTNGERAKSVMNEMRRNGLCPDLISWSILMDIYGSSQNRDGAIQ 547


>gi|242036071|ref|XP_002465430.1| hypothetical protein SORBIDRAFT_01g038770 [Sorghum bicolor]
 gi|241919284|gb|EER92428.1| hypothetical protein SORBIDRAFT_01g038770 [Sorghum bicolor]
          Length = 821

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/497 (43%), Positives = 309/497 (62%), Gaps = 13/497 (2%)

Query: 73  YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCV 132
           YYA +AS LA  GRL +F +  E +  + G+   FA+ +S  +++ G+  ++RE  +  V
Sbjct: 62  YYARVASNLAGAGRLRDFLLAAEGLRAAAGDDPSFAARISARLLSRGVAAAVRERGLPFV 121

Query: 133 VGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192
           +   +    + V  +E+ D      +   C+ LL+   +  FV ++E L  +   V+ + 
Sbjct: 122 LEFFRDAERVRVPAVEMLDADASDTVAGACRMLLEERRMVEFVEVVEALARYGFYVQGIV 181

Query: 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS 252
               ++++ V + + ++AIRYA I P + +L CN +  FGK+++L +AL  + A K  L 
Sbjct: 182 NPMDVLKIFVKQRNPDIAIRYARIFPNSQLLLCNTMEAFGKRKELKNALLVFGALKDQLG 241

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312
             NM+ CR+IID+CG CG  +++R I+E L +  +T N YVFNSLMNVNA+ L +   VY
Sbjct: 242 GINMFACRSIIDICGHCGSSVQARIIFEGLLADKITPNTYVFNSLMNVNAYSLSYNFSVY 301

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           K+MQ L V  D+ SYNILLK CC A    LAQEIY E+K  E  G+LKLDVFTYST++KV
Sbjct: 302 KHMQNLSVPPDLTSYNILLKTCCNAREFNLAQEIYEEMKKKERNGLLKLDVFTYSTMIKV 361

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           FADAK W+MA  +KEDM   G+  N +TWSSLIN  AN+GLV++A+ + EEM++ GC+P 
Sbjct: 362 FADAKVWKMASNIKEDMQVNGIRLNLVTWSSLINVYANSGLVDRAIEILEEMIRDGCQPT 421

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
           + C NI+L ACV++CQ+DRAFRLF SW  S  +++L  +     D       K+  S  +
Sbjct: 422 APCFNIILTACVKSCQYDRAFRLFYSWKESGIKISLSPEQKRGLDGGFTF-CKEYPSSGS 480

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWT 552
           T   VP            F+PT TTYNILMKAC T+  R K++MNEMR  GL P+ ISW+
Sbjct: 481 TILVVP------------FRPTVTTYNILMKACGTNAERAKSVMNEMRRNGLCPDLISWS 528

Query: 553 ILIDACGGSGNVEGALQ 569
           IL+D  G S N +GA+Q
Sbjct: 529 ILMDIYGTSQNRDGAVQ 545



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 77/145 (53%), Gaps = 7/145 (4%)

Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           +  +N LM     + +    V   M++ G+  D+ S++IL+     + N   A +    +
Sbjct: 491 VTTYNILMKACGTNAERAKSVMNEMRRNGLCPDLISWSILMDIYGTSQNRDGAVQ---AL 547

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + ++  G ++L+V  Y+  +K   + K  ++AL + E+M +  + PN +T+ +L+ A +N
Sbjct: 548 RRMQRVG-MRLNVSAYTVAIKACVENKDLKLALHLFEEMKTHQLKPNLVTYKTLLAARSN 606

Query: 411 AGL---VEQAMHLFEEMLQAGCEPN 432
            G    V+Q + +++EM +AG + N
Sbjct: 607 YGSLLEVQQCLAIYQEMRKAGYQAN 631



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           + +YNIL+KAC    N   A+ +  E++    +  L  D+ ++S ++ ++  ++    A+
Sbjct: 491 VTTYNILMKAC--GTNAERAKSVMNEMR----RNGLCPDLISWSILMDIYGTSQNRDGAV 544

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +    M   G+  N   ++  I AC     ++ A+HLFEEM     +PN      LL A
Sbjct: 545 QALRRMQRVGMRLNVSAYTVAIKACVENKDLKLALHLFEEMKTHQLKPNLVTYKTLLAA 603


>gi|326533124|dbj|BAJ93534.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326534390|dbj|BAJ89545.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 837

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/556 (41%), Positives = 334/556 (60%), Gaps = 30/556 (5%)

Query: 29  PNKHPVTKLFPLASS----SSLSSIPTVHSSQTA--------LLSTVRRDLSSRNDYYAD 76
           PN +P  K+ PL S      S +  PT + +  +        LLS V  + S+  DYY+ 
Sbjct: 35  PNPNPKAKVIPLLSDVGRLQSATPTPTPNGNPNSNPKGKVLPLLSDVGSNPSAI-DYYSR 93

Query: 77  MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVL 136
           +AS LA  GRL +F +  E +  + G+   FA+ ++  +++ G+V ++RE  +  V+  L
Sbjct: 94  VASNLAGAGRLGDFLIAAEGLRAASGDAG-FAARINWRLLSRGVVAALREHGLPHVLEFL 152

Query: 137 KKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196
           +  + +GV    + D      +   C++LLD   +  FV  +E L      VK + +   
Sbjct: 153 RDADRIGVHAAVMLDADASDAIAAACRKLLDDRIMAEFVEAIEALASCGFFVKGIVDPMD 212

Query: 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM 256
           ++++ V K D ++AIRYA I P + +L CN +  FGK+++L  AL+ + A K  L   NM
Sbjct: 213 VLKIFVRKRDPDMAIRYARIFPHSQLLLCNTMEAFGKRKELKYALKVFGALKDQLGGINM 272

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316
           + CR+IID+C  CG  +++R I+E L ++ +T N +VFNSLMN NAH + +   VYK+MQ
Sbjct: 273 FACRSIIDICSHCGSSVQARIIFEGLLAEKITPNTHVFNSLMNANAHSMSYNFSVYKHMQ 332

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           KLGV  D+ASYNILLK CC A     AQEIY E+K  E  G+LKLDVFTYST++KVFA+A
Sbjct: 333 KLGVRPDLASYNILLKTCCNAREFNTAQEIYEEMKKKENDGILKLDVFTYSTMMKVFAEA 392

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
           K W+MA  +K+DM + G   N +TWSSLINA AN+GL++ A+ + EEM++ GC+P + C 
Sbjct: 393 KMWKMASNIKDDMRAVGARLNLVTWSSLINAYANSGLIDGAIEILEEMIRDGCQPTAPCF 452

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN--TP 494
           NI+L A V++CQ+DRAFRLF SW     +V+L  +  G+     N    ++   TN  T 
Sbjct: 453 NIILTALVKSCQYDRAFRLFNSWMEFGIKVSLSLEQKGSLP--DNFTFCEEHPSTNGGTI 510

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTIL 554
             VP            F+PT TTYNILM AC T+  R K++MNEM+  GL P+ ISW+IL
Sbjct: 511 LVVP------------FRPTVTTYNILMMACGTNDERAKSVMNEMKRNGLCPDRISWSIL 558

Query: 555 IDACGGSGNVEGALQC 570
           +D  G S N  GA+Q 
Sbjct: 559 MDIYGTSQNRNGAIQA 574



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 75/143 (52%), Gaps = 7/143 (4%)

Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           +  +N LM     + +    V   M++ G+  D  S++IL+     + N   A +    +
Sbjct: 519 VTTYNILMMACGTNDERAKSVMNEMKRNGLCPDRISWSILMDIYGTSQNRNGAIQ---AL 575

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + ++  G+ KL+V  Y+  +K   ++K  ++AL + E+M +  + PN +T+ +L+ A + 
Sbjct: 576 RRMQRVGI-KLNVSAYTVAIKACVESKDLKLALHLFEEMKAHQLKPNMVTYRTLLTARSK 634

Query: 411 AGL---VEQAMHLFEEMLQAGCE 430
            G    +++ + +++EM QAG +
Sbjct: 635 YGSLKEIQKCLAIYQEMRQAGYQ 657



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%)

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           + +YNIL+ AC    N   A+ +  E+K    +  L  D  ++S ++ ++  ++    A+
Sbjct: 519 VTTYNILMMAC--GTNDERAKSVMNEMK----RNGLCPDRISWSILMDIYGTSQNRNGAI 572

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +    M   G+  N   ++  I AC  +  ++ A+HLFEEM     +PN      LL A
Sbjct: 573 QALRRMQRVGIKLNVSAYTVAIKACVESKDLKLALHLFEEMKAHQLKPNMVTYRTLLTA 631


>gi|357112772|ref|XP_003558181.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic-like [Brachypodium distachyon]
          Length = 849

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/554 (40%), Positives = 330/554 (59%), Gaps = 26/554 (4%)

Query: 29  PNKHPVTKLFP-------LASSSSLSSI-----PTVHSSQTALLSTVRRDLSSRNDYYAD 76
           PN     K+ P       L S++S S+      P++ +    LLS V  + S+  +YY+ 
Sbjct: 35  PNPKAKAKVIPVLSDVGRLQSATSTSTPNGNPNPSLKAKVLPLLSDVGSNPSA-IEYYSR 93

Query: 77  MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVL 136
           +AS LA  GRL +F +  E +  + G+   FA+ +S  +++ G+V ++ +  +  V+  L
Sbjct: 94  VASNLAGAGRLGDFLIAAEGLRAASGDAG-FAARISWRVLSRGVVVALGQHGLPHVLEFL 152

Query: 137 KKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196
           +  + +G+    + D      +   C++LL+   +  FV  +E L      VK + +   
Sbjct: 153 RDADRIGLHAAAMLDADASDAVAAACRQLLEERIMTEFVKAIEDLANCGFFVKGIVDPMD 212

Query: 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM 256
           ++++ V K D ++AIRYA I P + +L CN +  FGK+++L  AL+ + A K  L   NM
Sbjct: 213 VLKIFVKKRDPDMAIRYARIFPHSQLLLCNTMEAFGKRKELKHALKVFGALKDQLGGINM 272

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316
           + CR+IID+C  CG  +++R I+E L ++ +T N +VFNSLMN NAH L + L VYK+MQ
Sbjct: 273 FACRSIIDICSHCGSSVQARIIFEGLLAEKITPNTHVFNSLMNANAHSLSYNLSVYKHMQ 332

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           KLGV  D+ASYNILLK CC A     AQEIY E+K  E  G+LKLDVFTYST++KVFA+A
Sbjct: 333 KLGVSPDLASYNILLKTCCNAREFDSAQEIYEEMKKKEQNGLLKLDVFTYSTMMKVFAEA 392

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
           K W+MA  +KEDM + G   N +TWSSLINA AN+GLV+ A+ + EEM++ GC+P + C 
Sbjct: 393 KMWKMASNIKEDMRAVGARLNLVTWSSLINAYANSGLVDGAIEILEEMIRDGCQPTAPCF 452

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           NI+L A V++ Q+DRAFRLF SW  S  +++L  +  G          +   S   T   
Sbjct: 453 NIILTALVKSRQYDRAFRLFYSWKESGIRISLSLEQKGCLPDNFTFCKEHPSSNGGTILE 512

Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556
           VP            F+PT TTYNILM AC T+  R +++MNEMR  GL P+ ISW+IL+D
Sbjct: 513 VP------------FRPTVTTYNILMMACGTNDERARSIMNEMRRNGLCPDRISWSILMD 560

Query: 557 ACGGSGNVEGALQC 570
             G S N  GA+Q 
Sbjct: 561 IYGTSQNRNGAIQA 574



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           + +YNIL+ AC    N   A+ I  E++    +  L  D  ++S ++ ++  ++    A+
Sbjct: 519 VTTYNILMMAC--GTNDERARSIMNEMR----RNGLCPDRISWSILMDIYGTSQNRNGAI 572

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +    M   G+  N   ++  I AC  +  +  A+HLFEEM     +PN      LL A
Sbjct: 573 QALRRMQRVGIKLNVSAYTVAIKACVESKDLNTALHLFEEMKAHQLKPNMVTYRTLLTA 631



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 72/141 (51%), Gaps = 7/141 (4%)

Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           +  +N LM     + +    +   M++ G+  D  S++IL+     + N   A +    +
Sbjct: 519 VTTYNILMMACGTNDERARSIMNEMRRNGLCPDRISWSILMDIYGTSQNRNGAIQ---AL 575

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CA 409
           + ++  G+ KL+V  Y+  +K   ++K    AL + E+M +  + PN +T+ +L+ A C 
Sbjct: 576 RRMQRVGI-KLNVSAYTVAIKACVESKDLNTALHLFEEMKAHQLKPNMVTYRTLLTARCK 634

Query: 410 NAGL--VEQAMHLFEEMLQAG 428
              L  ++Q + +++EM +AG
Sbjct: 635 YGSLQEIQQCLAIYQEMRKAG 655


>gi|222624701|gb|EEE58833.1| hypothetical protein OsJ_10405 [Oryza sativa Japonica Group]
          Length = 483

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/374 (50%), Positives = 251/374 (67%), Gaps = 15/374 (4%)

Query: 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM 256
           ++++ V K D N+AIRYA I P++ +L CN +  FGK+++L  AL  + A K      NM
Sbjct: 3   VLKIFVKKRDPNMAIRYARIFPQSQLLLCNTMEAFGKRKELKHALTVFGALKDQFGGINM 62

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316
           + CR+IID+CG CG  +++R I+E L +  +T N+YVFNSLMNVNAH   +   VYK+MQ
Sbjct: 63  FACRSIIDICGHCGSSVQARIIFEGLLADKITPNVYVFNSLMNVNAHSFSYNFSVYKHMQ 122

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
            LGV  D+ SYNILLK CC A    LAQEIY E+K  E  G+LKLDVFTYST++KVFADA
Sbjct: 123 NLGVPPDLTSYNILLKTCCNAKEYKLAQEIYEEIKKKEQNGLLKLDVFTYSTMMKVFADA 182

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
           K W++A  +K+DM SAGV  N +TWSSLINA AN+GLV++A+ + EEM + GC+P + C 
Sbjct: 183 KMWKLASDIKQDMQSAGVRLNLVTWSSLINAYANSGLVDRAIEILEEMTRDGCQPTAPCF 242

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG-NTDRISNMEHKDKQSITNTPN 495
           NI+L  CV++CQ+DRAFRLF  W     +++L  +  G   D  S  E  +  S ++T  
Sbjct: 243 NIILTGCVKSCQYDRAFRLFYDWKEYGVKISLSPEQKGCFGDNFSYCE--EHTSNSSTLL 300

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
            VP            F+PT TTYNILMKAC T+  R K++MNEMR  GL P+ ISW+IL+
Sbjct: 301 VVP------------FRPTVTTYNILMKACGTNGERAKSVMNEMRRNGLCPDLISWSILM 348

Query: 556 DACGGSGNVEGALQ 569
           D  G S N +GA+Q
Sbjct: 349 DIYGSSQNRDGAIQ 362



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 43/252 (17%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           I +D++S  V LN+  ++SL+N  A+   +   +E+ + M + G       +NI+L  C 
Sbjct: 191 IKQDMQSAGVRLNLVTWSSLINAYANSGLVDRAIEILEEMTRDGCQPTAPCFNIILTGCV 250

Query: 336 LAGNTVLAQEIYGEVKHL--------EAKGVL----------------------KLDVFT 365
            +     A  ++ + K          E KG                        +  V T
Sbjct: 251 KSCQYDRAFRLFYDWKEYGVKISLSPEQKGCFGDNFSYCEEHTSNSSTLLVVPFRPTVTT 310

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+ ++K        + A  V  +M   G+ P+ I+WS L++   ++   + A+     M 
Sbjct: 311 YNILMKACGTNG--ERAKSVMNEMRRNGLCPDLISWSILMDIYGSSQNRDGAIQALRRMQ 368

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED----YDGNTDR--- 478
           + G + N     + ++ACVE      A  LF      + +  LG++    YD   D+   
Sbjct: 369 RVGMKLNVTAYTVAIKACVENKDLKLALHLFEEMKAHQLKPNLGQESHDSYDQQVDQRTY 428

Query: 479 --ISNMEHKDKQ 488
              S+  HK  Q
Sbjct: 429 AAWSDQAHKKHQ 440


>gi|168055626|ref|XP_001779825.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668737|gb|EDQ55338.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 734

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 184/533 (34%), Positives = 283/533 (53%), Gaps = 16/533 (3%)

Query: 39  PLASSSSLSSIPTVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVV 98
           P  S S+L+   T+      +   +RR       YY  +A +LA +G + +F  +++ + 
Sbjct: 99  PSTSESALAQFETISPEDVKV--CLRR--KGMLKYYTLLAGQLASEGYMTQFTELLQMLA 154

Query: 99  VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158
            +  +   F   L    +  G    +   ++D  V +L+ L + G         S   LL
Sbjct: 155 DAGIDKELFTYKLDTAQLNIGFRLLLSRQQLDLFVSILRNLTKAGYTAPNFVQKSTLDLL 214

Query: 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218
            +E   L+ +G  E  V L+E L E    V+ L +   +V  C    +++LA R+  ++ 
Sbjct: 215 ADELLSLVKAGRTEFCVELVEYLTESGFFVRNLIDPVSVVSSCAKLRNIDLARRFVELLS 274

Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           R    +   +REF +  +L S  +  D  K+    P+++  R +ID CG   +  K+  +
Sbjct: 275 RNPWHYNLIIREFSRHGNLRSCFKVLDFMKELGVMPDVFTYRVLIDSCGRHKEPSKATIV 334

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           +E + +     N +V+NS+MNVN  +L      +++MQ  G+ AD+ SYNILLKA   +G
Sbjct: 335 FEKMLNDGFEPNRFVYNSIMNVNVGNLSEVRRYFQHMQGAGIAADVTSYNILLKAYAASG 394

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
              LA ++Y ++K     G + LDV  YST++ VF  AK W+ AL+VK DML AGVTPN 
Sbjct: 395 RADLAGDLYAQIKK---AGKVTLDVVFYSTLINVFGKAKMWEEALRVKADMLEAGVTPNV 451

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +TW+S+I ACA AGLV+Q+   F+EML AGC PN  C N+LLQAC+ A QFDRAF LF  
Sbjct: 452 VTWTSIIGACATAGLVDQSFREFDEMLNAGCRPNVNCYNMLLQACIMASQFDRAFLLFEE 511

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF---DKRFS-FKPT 514
           W  +    +  E ++      S    K  + IT  P  +  S+       D R +  +P 
Sbjct: 512 WKTTGRMRSYSEIFN-----YSAPLAKTHELITVIPGSLLQSNLGEKIDEDVRLACCRPN 566

Query: 515 TTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             TYN +MKAC +   +V++LM EMR +GL P+  SW+IL+D+ G  G+VEGA
Sbjct: 567 IITYNCMMKACGSASEKVRSLMREMRALGLVPDVKSWSILLDSYGSKGDVEGA 619



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 7/154 (4%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           I ED+R      NI  +N +M       +    + + M+ LG++ D+ S++ILL +    
Sbjct: 554 IDEDVRLACCRPNIITYNCMMKACGSASEKVRSLMREMRALGLVPDVKSWSILLDSYGSK 613

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G+   A E   E+K   A G  K DV  Y+++++    A   + A      M +AGV PN
Sbjct: 614 GDVEGASEALEEMK---AAG-FKPDVVAYTSLIQACVQAGHLEKAFDYFSKMKAAGVRPN 669

Query: 398 TITWSSLINACANAGL---VEQAMHLFEEMLQAG 428
            +T++SL+    N G    V++A+ L+EEM +AG
Sbjct: 670 AVTYNSLLRRHRNYGTLPEVQRALALYEEMREAG 703



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 116/262 (44%), Gaps = 15/262 (5%)

Query: 206 DVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV 265
           D+   I+ A  V    + +   +  FGK +    ALR      +   +PN+    +II  
Sbjct: 401 DLYAQIKKAGKVTLDVVFYSTLINVFGKAKMWEEALRVKADMLEAGVTPNVVTWTSIIGA 460

Query: 266 CGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTL-EVYKNMQKLGV 320
           C   G   +S   ++++ +     N+  +N L+      +  D  F L E +K   ++  
Sbjct: 461 CATAGLVDQSFREFDEMLNAGCRPNVNCYNMLLQACIMASQFDRAFLLFEEWKTTGRMRS 520

Query: 321 MADMASYNILLKAC-----CLAGNTVLAQEIYGEVKHLEAK-GVLKLDVFTYSTIVKVFA 374
            +++ +Y+  L         + G+  L Q   GE    + +    + ++ TY+ ++K   
Sbjct: 521 YSEIFNYSAPLAKTHELITVIPGS--LLQSNLGEKIDEDVRLACCRPNIITYNCMMKACG 578

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            A   +    +  +M + G+ P+  +WS L+++  + G VE A    EEM  AG +P+  
Sbjct: 579 SAS--EKVRSLMREMRALGLVPDVKSWSILLDSYGSKGDVEGASEALEEMKAAGFKPDVV 636

Query: 435 CCNILLQACVEACQFDRAFRLF 456
               L+QACV+A   ++AF  F
Sbjct: 637 AYTSLIQACVQAGHLEKAFDYF 658



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 30/192 (15%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           ++ +YN ++KAC  A     ++++   ++ + A G++  DV ++S ++  +      + A
Sbjct: 566 NIITYNCMMKACGSA-----SEKVRSLMREMRALGLVP-DVKSWSILLDSYGSKGDVEGA 619

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            +  E+M +AG  P+ + ++SLI AC  AG +E+A   F +M  AG  PN+   N LL  
Sbjct: 620 SEALEEMKAAGFKPDVVAYTSLIQACVQAGHLEKAFDYFSKMKAAGVRPNAVTYNSLL-- 677

Query: 443 CVEACQFDRAFRLFRSW-TLSKTQVALG---EDYDGNTDRISNMEHKDKQSITNTPNFVP 498
                      R  R++ TL + Q AL    E  +    RI+ M+ K      +TP  V 
Sbjct: 678 -----------RRHRNYGTLPEVQRALALYEEMREAGHGRITRMDLK------STPVMVD 720

Query: 499 -NSHYSSFDKRF 509
            N  Y S   R+
Sbjct: 721 FNPVYESLTLRY 732


>gi|302769928|ref|XP_002968383.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
 gi|300164027|gb|EFJ30637.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
          Length = 532

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 171/502 (34%), Positives = 278/502 (55%), Gaps = 40/502 (7%)

Query: 73  YYADMASKLAKDGRLEEFAMIVESVVV--SEGNVSKFASMLSLEMVASGIVKSIREGRID 130
           +Y   A +LA+ GRL E   +V+  +   + G+   F  ++ +  V  G V  + + R+ 
Sbjct: 26  FYVGEAKRLARRGRLIEMIGLVQERLEHGAVGDARAFLEVVGIHAVRDGCVSVLEQRRLP 85

Query: 131 CVVGVLKKLNELGVA-PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVK 189
            +V   + L+E+G++ P +     G +L+ +EC RLL    VE  +  +E L +    VK
Sbjct: 86  YLVEFCRALSEMGISSPSDYLGRYGLQLVIDECGRLLQENRVEECIRCLERLAKCGFVVK 145

Query: 190 ELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF-CNFV-REFGKKRDLVSALRAYDAS 247
            L +    ++ C    +  LA+RYAC++P  DIL  CN + ++F  + DL S  + + A 
Sbjct: 146 NLVKPTLCMEACARMHNTALALRYACLLP--DILHSCNMIMQKFRDQGDLQSVFQVFQAL 203

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307
           +     P+MY    +ID CG CGD  K+ AI+E L      LN+YV NS+MN +A +++ 
Sbjct: 204 ESTGVLPDMYSYCILIDACGRCGDTEKATAIFEGLLKAGTVLNVYVCNSMMNAHAGNIQH 263

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            L +Y+ MQ  G+ AD+ +YNI+ KAC L+ N VLA  +Y E+K  E    +KL+V +Y 
Sbjct: 264 VLRLYRQMQGSGIAADVTTYNIVFKACRLSKNPVLALRLYEELKAKE----IKLNVLSYG 319

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           T++++F +AK      ++K DM S G+ PN +TW+SL+ AC+   LVE+ + ++++M+QA
Sbjct: 320 TLIQIFGEAKMLDRVFQMKRDMDSTGIVPNVVTWTSLVGACSKGALVEKTLQVYQDMVQA 379

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
           GC PN+   N LL ACV+  Q D+A +LFR W  S   +A              +E +D+
Sbjct: 380 GCTPNAFTYNFLLSACVDGGQSDKAHKLFREWKTSGRILA-------------GIEVQDE 426

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPN 547
             I           +S +      +P +  YN +M+AC     + +A+M EM + GL P+
Sbjct: 427 SVI-----------FSEW-----VRPDSVAYNTMMRACDKLPKQAEAVMQEMVSSGLRPD 470

Query: 548 HISWTILIDACGGSGNVEGALQ 569
             SW ILI++ G +G+ +GA+Q
Sbjct: 471 KRSWCILINSYGCNGDKQGAVQ 492



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 18/210 (8%)

Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
           ++ V ALR Y+  K      N+    T+I + G      +   +  D+ S  +  N+  +
Sbjct: 294 KNPVLALRLYEELKAKEIKLNVLSYGTLIQIFGEAKMLDRVFQMKRDMDSTGIVPNVVTW 353

Query: 295 NSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK- 351
            SL+   +    ++ TL+VY++M + G   +  +YN LL AC   G +  A +++ E K 
Sbjct: 354 TSLVGACSKGALVEKTLQVYQDMVQAGCTPNAFTYNFLLSACVDGGQSDKAHKLFREWKT 413

Query: 352 --------HLEAKGVL-----KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
                    ++ + V+     + D   Y+T+++  A  K  + A  V ++M+S+G+ P+ 
Sbjct: 414 SGRILAGIEVQDESVIFSEWVRPDSVAYNTMMR--ACDKLPKQAEAVMQEMVSSGLRPDK 471

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            +W  LIN+    G  + A+  F+ M ++G
Sbjct: 472 RSWCILINSYGCNGDKQGAVQAFQRMGKSG 501


>gi|302765062|ref|XP_002965952.1| hypothetical protein SELMODRAFT_84012 [Selaginella moellendorffii]
 gi|300166766|gb|EFJ33372.1| hypothetical protein SELMODRAFT_84012 [Selaginella moellendorffii]
          Length = 533

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 173/503 (34%), Positives = 279/503 (55%), Gaps = 41/503 (8%)

Query: 73  YYADMASKLAKDGRLEEFAMIVESVVV--SEGNVSKFASMLSLEMVASGIVKSIREGRID 130
           +Y   A +LA+ GRL E   +V+  +   + G+   F  ++ +  V  G V  + + R+ 
Sbjct: 26  FYVGEAKRLARRGRLIEMIGLVQERLEHGAVGDARAFLEVVGIHAVRDGCVSVLEQRRLP 85

Query: 131 CVVGVLKKLNELGVA-PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVK 189
            VV   + L+ELG++ P +     G +L+ +EC RLL    VE  +  +E L +    VK
Sbjct: 86  YVVEFCRALSELGISSPSDYLGRYGLQLVIDECGRLLQENRVEECIRCLERLAKCGFVVK 145

Query: 190 ELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL-FCNFV-REFGKKRDLVSALRAYDAS 247
            L +    ++ C    +  LA+RYAC++P  DIL  CN + ++F  + DL S  + + A 
Sbjct: 146 NLVKPTLCMEACARMHNTALALRYACLLP--DILQSCNMIMQKFRDQGDLQSVFQVFQAL 203

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307
           +     P+MY    +ID CG CGD  K+ AI+E L      LN+YV NS+MN +A +++ 
Sbjct: 204 ESTGVRPDMYSYCILIDACGRCGDAEKATAIFEGLLKAGTVLNVYVCNSMMNAHAGNIQH 263

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            L +Y+ MQ  G+ AD+ +YNI+ KAC L+ N VLA  +Y E+K  E    +K++V +Y 
Sbjct: 264 VLRLYRQMQGSGIAADVTTYNIVFKACRLSKNPVLALRLYEELKAKE----IKMNVLSYG 319

Query: 368 TIVKV-FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           T+++V F +AK      ++K DM S G+ PN +TW+SL+ AC+   LVE+ + ++++M+Q
Sbjct: 320 TLIQVIFGEAKMLDRVFQMKHDMDSTGIVPNVVTWTSLVGACSKGALVEKTLQVYQDMVQ 379

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
           AGC PN+   N LL ACV+  Q D+A +LFR W  S   +A              +E +D
Sbjct: 380 AGCTPNAFTYNFLLSACVDGGQSDKAHKLFREWKTSGRILA-------------GIEVQD 426

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSP 546
           + +I           +S +      +P +  YN +M+AC     + +A+M EM + GL P
Sbjct: 427 ESAI-----------FSEW-----VRPDSVAYNTMMRACDKLPKQAEAVMQEMVSSGLRP 470

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
           +  SW ILI++ G +G+ +GA+Q
Sbjct: 471 DKRSWCILINSYGCNGDKQGAVQ 493



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 23/213 (10%)

Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE---DLRSQNVTLNI 291
           ++ V ALR Y+  K      N+    T+I V  I G+      +++   D+ S  +  N+
Sbjct: 294 KNPVLALRLYEELKAKEIKMNVLSYGTLIQV--IFGEAKMLDRVFQMKHDMDSTGIVPNV 351

Query: 292 YVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             + SL+   +    ++ TL+VY++M + G   +  +YN LL AC   G +  A +++ E
Sbjct: 352 VTWTSLVGACSKGALVEKTLQVYQDMVQAGCTPNAFTYNFLLSACVDGGQSDKAHKLFRE 411

Query: 350 VK-------HLEAKG-------VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            K        +E +         ++ D   Y+T+++  A  K  + A  V ++M+S+G+ 
Sbjct: 412 WKTSGRILAGIEVQDESAIFSEWVRPDSVAYNTMMR--ACDKLPKQAEAVMQEMVSSGLR 469

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           P+  +W  LIN+    G  + A+  F+ M ++G
Sbjct: 470 PDKRSWCILINSYGCNGDKQGAVQAFQRMGRSG 502


>gi|224102265|ref|XP_002334200.1| predicted protein [Populus trichocarpa]
 gi|222870081|gb|EEF07212.1| predicted protein [Populus trichocarpa]
          Length = 317

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 146/273 (53%), Positives = 187/273 (68%), Gaps = 5/273 (1%)

Query: 49  IPTVHSSQTALLSTV----RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNV 104
           IP VHS    LLST+      + SS  DY+A++ASKLA+DGRL++F MI ESV+ S    
Sbjct: 45  IPAVHSRSPPLLSTIPFRQNHNSSSLLDYHANLASKLAEDGRLQDFVMIAESVIASGVEP 104

Query: 105 SKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR 164
           S F + LS+  VA GI K++++G +DCVV  LKK  ELGV+ L+  DG    LLK EC R
Sbjct: 105 SSFVAALSVGPVAKGISKNLQQGNVDCVVRFLKKTEELGVSTLKFLDGVAIDLLKKECIR 164

Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP-RADIL 223
           +++ G+VE  V +ME L  F    KEL +   I+++CV+K +  +A+RYA I P    IL
Sbjct: 165 IVNCGDVEQVVYIMETLAGFCFSFKELVDPSYIIKICVDKLNPKMAVRYAAIFPGEGRIL 224

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           FCN + EFG+K  L SAL AYD +K  LS PNMY+ RTIIDVCG+CGDYMKSR IYEDL 
Sbjct: 225 FCNIISEFGRKGHLDSALVAYDEAKHKLSVPNMYLHRTIIDVCGLCGDYMKSRYIYEDLI 284

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316
           ++ V  N+YVFNSLMNVNAHDL +   V+KNMQ
Sbjct: 285 NRKVIPNVYVFNSLMNVNAHDLGYPFRVFKNMQ 317


>gi|168063169|ref|XP_001783546.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664933|gb|EDQ51635.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 324

 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 126/318 (39%), Positives = 185/318 (58%), Gaps = 25/318 (7%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312
           +P++Y  R +ID CG C +  K+  ++E +       N++V+NSLMNV+  DL      Y
Sbjct: 7   APDLYTYRALIDSCGRCNESSKAAVVFETMLKDGFKPNVFVYNSLMNVSVGDLDEVQRYY 66

Query: 313 KNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++MQ+  G+  ++AS+NILLKA    G   LA ++Y  ++     G L LDV +Y+ ++ 
Sbjct: 67  QHMQQGAGITGNLASFNILLKAYAACGRADLAADLYFRIQQ---TGELNLDVVSYNAVIN 123

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           VF  AK W+ AL+VK D++ AGVTPN +TW+S+I ACA AGLVE+    F+EML AGC P
Sbjct: 124 VFGRAKMWEKALRVKADIIEAGVTPNVVTWTSIIEACATAGLVERVFQEFDEMLSAGCCP 183

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           N  C N LLQACV A Q +RAF+LF+ W                T +I    H   +   
Sbjct: 184 NVDCYNALLQACVMAGQNERAFQLFQEWK--------------QTGQI----HIFPRPSP 225

Query: 492 NTPNFVPNSHYSSFDKRFS-FKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHIS 550
           +   ++   ++ S   R S  KP   TYN +MKAC     R+++LM EM+   L P+  S
Sbjct: 226 SWNGYIDEENWDSL--RLSRCKPNLLTYNWMMKACGAAPERIRSLMLEMQAFNLIPDVTS 283

Query: 551 WTILIDACGGSGNVEGAL 568
           W+IL+ A G +G++EG +
Sbjct: 284 WSILLGAYGSNGDLEGCM 301


>gi|413956099|gb|AFW88748.1| hypothetical protein ZEAMMB73_433087 [Zea mays]
 gi|413956100|gb|AFW88749.1| hypothetical protein ZEAMMB73_433087 [Zea mays]
          Length = 487

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/223 (49%), Positives = 144/223 (64%), Gaps = 19/223 (8%)

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +K  E  G+LKLDVFTYST++KVFADAK W+MA  +KEDM + GV  N +TWSSLINA A
Sbjct: 1   MKKKERDGLLKLDVFTYSTMMKVFADAKMWKMASNIKEDMQANGVRLNLVTWSSLINAYA 60

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
           N+GLV++A+ + +EM++ GC+P + C NI+L ACV++CQ+DRAFRLF SW  S  +++L 
Sbjct: 61  NSGLVDRAIEILKEMIRDGCQPTAPCFNIILTACVKSCQYDRAFRLFYSWKESGIKISLS 120

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF---SFKPTTTTYNILMKACC 526
            +     D                  F     Y + D       F+PT TTYNILMKAC 
Sbjct: 121 SEQKRVID----------------GGFTFCKEYPNNDSTILVVPFRPTVTTYNILMKACG 164

Query: 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           T+  R K+ MNEMR  GL P+ ISW+ILID  G S N +GA+Q
Sbjct: 165 TNAERAKSTMNEMRRNGLCPDLISWSILIDIYGSSQNRDGAVQ 207



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 84/164 (51%), Gaps = 16/164 (9%)

Query: 291 IYVFNSLMN---VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +  +N LM     NA   K T+     M++ G+  D+ S++IL+    + G++       
Sbjct: 153 VTTYNILMKACGTNAERAKSTMN---EMRRNGLCPDLISWSILID---IYGSSQNRDGAV 206

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             ++ ++  G ++L+V  Y+  +K   + K  ++AL + E+M +  + PN +T+ +L+ A
Sbjct: 207 QALRRMQRVG-MRLNVSAYTVAIKACVENKDLKLALHLFEEMKTHQLKPNLVTYKTLLAA 265

Query: 408 CANAGL---VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
             N G    V+Q + +++EM +AG + N      L +  VE C+
Sbjct: 266 RINYGSLQEVQQCLAIYQEMRKAGFQANDY---YLKELIVEWCE 306


>gi|108707552|gb|ABF95347.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215765857|dbj|BAG87554.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 451

 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 124/192 (64%), Gaps = 15/192 (7%)

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           W++A  +K+DM SAGV  N +TWSSLINA AN+GLV++A+ + EEM + GC+P + C NI
Sbjct: 2   WKLASDIKQDMQSAGVRLNLVTWSSLINAYANSGLVDRAIEILEEMTRDGCQPTAPCFNI 61

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG-NTDRISNMEHKDKQSITNTPNFV 497
           +L  CV++CQ+DRAFRLF  W     +++L  +  G   D  S  E  +  S ++T   V
Sbjct: 62  ILTGCVKSCQYDRAFRLFYDWKEYGVKISLSPEQKGCFGDNFSYCE--EHTSNSSTLLVV 119

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           P            F+PT TTYNILMKAC T+  R K++MNEMR  GL P+ ISW+IL+D 
Sbjct: 120 P------------FRPTVTTYNILMKACGTNGERAKSVMNEMRRNGLCPDLISWSILMDI 167

Query: 558 CGGSGNVEGALQ 569
            G S N +GA+Q
Sbjct: 168 YGSSQNRDGAIQ 179



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 94/199 (47%), Gaps = 19/199 (9%)

Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           +  +N LM     + +    V   M++ G+  D+ S++IL+    + G++         +
Sbjct: 125 VTTYNILMKACGTNGERAKSVMNEMRRNGLCPDLISWSILMD---IYGSSQNRDGAIQAL 181

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + ++  G +KL+V  Y+  +K   + K  ++AL + E+M +  + PN +T+ +L+ A   
Sbjct: 182 RRMQRVG-MKLNVTAYTVAIKACVENKDLKLALHLFEEMKAHQLKPNLVTYKTLLTARNK 240

Query: 411 AGL---VEQAMHLFEEMLQAGCEPNSQCC-NILLQAC----------VEACQFDRAFRLF 456
            G    V+Q + +++EM +AG + N     N++++ C           E  Q D+    F
Sbjct: 241 YGSLQEVQQCLAIYQEMRKAGYQANDYYLKNLIVEWCEGVLSSGNGNREYYQLDQRKESF 300

Query: 457 RSWTLSKTQVALGEDYDGN 475
           +   L K    L +D D N
Sbjct: 301 K-LVLEKVTTFLQKDVDQN 318


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 162/348 (46%), Gaps = 23/348 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
           +   V  +G+      AL+ + A KK    PN+    TIID CG  G D  K+  I+E++
Sbjct: 237 YSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEM 296

Query: 283 RSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           + + V  +   FNSL+ V +     + +  V+  MQ+ G+  D+ +YN L+ A C  G  
Sbjct: 297 QKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQM 356

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
            LA  I   ++       +  +V TYST++  +     ++ A+ +  DM  +GV P+ ++
Sbjct: 357 ELAASIMSSMRLKN----ISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVS 412

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +++LI+  A  G  + A+   ++M + G + +    N L+ A  +  ++  A  LF    
Sbjct: 413 YNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDK-M 471

Query: 461 LSKTQVALGEDYDGNTDRISNME-HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
            ++  V     Y    D  S    H+D  SI           +  F KR   KP    Y+
Sbjct: 472 KAEGLVPNVLTYSALIDAYSKAGMHQDATSI-----------FVEF-KRAGLKPDVVLYS 519

Query: 520 ILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            L+ +CC       A  L+ EM   G+ PN +++  LIDA G +G V+
Sbjct: 520 SLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVD 567



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 147/300 (49%), Gaps = 29/300 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           SPN+    T+ID  G  G + ++  +Y D++   V  +   +N+L+++ A   +F   L 
Sbjct: 372 SPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALT 431

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
             K+M+++G+ AD+ +YN L+ A    G    A  ++ ++K   A+G++  +V TYS ++
Sbjct: 432 ACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMK---AEGLVP-NVLTYSALI 487

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             ++ A   Q A  +  +   AG+ P+ + +SSLI++C   GLVE A+ L +EM QAG +
Sbjct: 488 DAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQ 547

Query: 431 PNSQCCNILLQAC--------VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
           PN    N L+ A         VEA + +    +F        +V      D +T+ I   
Sbjct: 548 PNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVF-------NKVG-----DRSTEIICKT 595

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMR 540
               + +  +T      S +    ++F  KP   T++ ++ AC  C+       L+ +MR
Sbjct: 596 LTSQQNANDHTGVLAAVSVFHEM-QQFGLKPNVVTFSAILNACSRCSSLQEASVLLEQMR 654


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 158/337 (46%), Gaps = 63/337 (18%)

Query: 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300
           LR  + S +  S  ++Y   T+I  CG      ++  +  ++RS+ +  N++ +++LMNV
Sbjct: 261 LRNLEPSHELSSLCDLYTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNV 320

Query: 301 --NAHDLKFTLEVYKNMQKLGVMADMASYNILL----KACCLAGNTVLAQEIYGEVKHLE 354
              A++L    +VYK M + G   ++ +YNIL+    K C         +E    +  LE
Sbjct: 321 CIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRCQW-------EEAVKVLDTLE 373

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            K  ++ +V TY+T++     +   + ALKV E ML+AGV P+  T+++LI+A    G V
Sbjct: 374 -KQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQV 432

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG 474
           E+A+ +F +M++ GCE N    + L+ AC +A +++ A  LF                  
Sbjct: 433 EKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELF------------------ 474

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA 534
                S M HK+                       + KP   T+N L+ AC    +  KA
Sbjct: 475 -----SKM-HKE-----------------------NCKPNVVTFNSLIAACSHGGHWEKA 505

Query: 535 --LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             L  +M+T G  P+ I++  LI A    G    AL+
Sbjct: 506 SELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALK 542



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A++  D  +K      +    T+I  C   G   ++  +YE + +  V  +   + +L++
Sbjct: 365 AVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALIS 424

Query: 300 VNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                  ++  LE++++M + G   ++ +Y+ L+ AC  AG   +A E++ ++     K 
Sbjct: 425 AYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMH----KE 480

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
             K +V T+++++   +    W+ A ++ E M + G  P++IT+  LI A    G   +A
Sbjct: 481 NCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRA 540

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           +  FE+M   GC P++   N L++   ++       +  + WTL+
Sbjct: 541 LKAFEQMQTQGCHPDAAVFNSLMEVLWQSGVLLAQSKALQLWTLA 585


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 55/307 (17%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVY 312
           ++Y   TII  CG      K+  +  ++R   V  N++ +++LMNV   A++L+  L+VY
Sbjct: 72  DVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVY 131

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             + + G   ++ +YNIL+      GN    QE    +  LE +G  K +V TY+TI+  
Sbjct: 132 GQLLREGCTPNLVTYNILIDIHGKMGNW---QEAVQVLDALEDQGT-KPEVRTYNTILSA 187

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
              +   + AL+V E ML+ G  P   T+++LI+A    G +E+A+ +F++M++ GCE N
Sbjct: 188 CNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERN 247

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
               + L+ AC +A ++  A  L                         +  H+D      
Sbjct: 248 VITYSSLISACEKAGRWQLALELL------------------------DEMHRD------ 277

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHIS 550
                            + KP T T+N L+ AC     +   + +  +M + G  P+ +S
Sbjct: 278 -----------------NCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVS 320

Query: 551 WTILIDA 557
           + ILI A
Sbjct: 321 YAILISA 327



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 109/224 (48%), Gaps = 6/224 (2%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K  +L  AL  Y    +   +PN+     +ID+ G  G++ ++  + + L  Q     + 
Sbjct: 120 KANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVR 179

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +N++++    +   +  L VY+ M   G      +Y  L+ A    G    A  I+ ++
Sbjct: 180 TYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDM 239

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
                +   + +V TYS+++     A  WQ+AL++ ++M      PNT+T+++L++ACA 
Sbjct: 240 ----VRRGCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQ 295

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            G  + A  +FE+M   GC+P++    IL+ A     Q+ RA +
Sbjct: 296 GGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQ 339



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 22/214 (10%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           DV+TY+TI+      +  + AL++  +M   GV  N  T+S+L+N C  A  +E A+ ++
Sbjct: 72  DVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVY 131

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            ++L+ GC PN    NIL+    +   +  A ++                 D   D+ + 
Sbjct: 132 GQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVL----------------DALEDQGTK 175

Query: 482 MEHKDKQSITNTPNFV--PNSHYSSFDKRFS--FKPTTTTYNILMKACCTDYYRVKAL-- 535
            E +   +I +  N    P      +++  +   +PT TTY  L+ A        +AL  
Sbjct: 176 PEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRI 235

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             +M   G   N I+++ LI AC  +G  + AL+
Sbjct: 236 FQDMVRRGCERNVITYSSLISACEKAGRWQLALE 269


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 150/331 (45%), Gaps = 41/331 (12%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKL 318
           ++I  CG    + ++  + E +R+Q V+ N+  +NS ++  A     K  L++ + M  +
Sbjct: 292 SVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTV 351

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G++  + SYN    AC + G  V A E+   +K + A+G+   +  +Y++ +   A    
Sbjct: 352 GLVPTVISYNSATAACAVNGRWVEALEL---LKEMPAQGIAP-NTISYNSALDACAKGGQ 407

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           W+ A+K+   M + G  P+ I+++S I+AC      E A+ L  EM  AG  PN    N 
Sbjct: 408 WEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNS 467

Query: 439 LLQACVEACQFDRAFRLFR---SWTLSKTQV---------ALGEDYDGNTDRISNMEHKD 486
            ++AC  + ++  A  LFR   +  LS   V         A GE ++     ++ M  + 
Sbjct: 468 AIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARG 527

Query: 487 KQSITNTPNFVP-NSHYSSFDKRFSF---------------KPTTTTYNILMKACCTD-- 528
                  P+ +  NS   +  K   +               KP   +YN  + AC     
Sbjct: 528 V-----APDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACAKSGR 582

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACG 559
           +     L+ +M TVGL+PN +S+   I ACG
Sbjct: 583 WREALGLLKDMATVGLTPNTVSYGAAIHACG 613



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 144/332 (43%), Gaps = 41/332 (12%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN 328
           D+  + A  ++ +    +L+   +N  +    N       + + + M   GV  D+ +YN
Sbjct: 90  DWRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYN 149

Query: 329 ILLKACCLAGNTVLAQEIYGE-VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             + AC   G    A ++  + V   E    +  DV TY++ +   ++   W+ A+ + E
Sbjct: 150 SAIAACSKGGRWKEAMDLLTQMVAPTEG---ITPDVVTYNSAIAACSNGGRWKEAMDLLE 206

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            M++ GV PN IT++S I ACA     E+AM L EE+++ G  P+++  N ++ AC +  
Sbjct: 207 QMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGG 266

Query: 448 QFDRAFRLFR------------SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
           ++  A  L              S++        G  +    D +  M     Q +  +PN
Sbjct: 267 RWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMR---TQGV--SPN 321

Query: 496 FVP-NSHYSSFDKRFSFK---------------PTTTTYNILMKACCTDYYRVKA--LMN 537
            +  NS   +  K   +K               PT  +YN    AC  +   V+A  L+ 
Sbjct: 322 VISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLK 381

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           EM   G++PN IS+   +DAC   G  E A++
Sbjct: 382 EMPAQGIAPNTISYNSALDACAKGGQWEKAVK 413



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 106/206 (51%), Gaps = 6/206 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312
           +PN+    + I+ CG    + ++  ++ ++ ++ ++ N+  +NS+++  A   ++ L V 
Sbjct: 459 TPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQ 518

Query: 313 --KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
               M   GV  D+ SYN  ++AC       LA ++   +K +  +G  K D+ +Y++ V
Sbjct: 519 LLTGMPARGVAPDVISYNSAIEACGKGEQWELALQL---LKGMPTRGP-KPDIISYNSAV 574

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
              A +  W+ AL + +DM + G+TPNT+++ + I+AC      + A+ + +EM   G  
Sbjct: 575 TACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGAT 634

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
           PN    +  + AC +  ++  A  L 
Sbjct: 635 PNLITYSAAIDACAKQGRWKEAVDLL 660



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 136/310 (43%), Gaps = 55/310 (17%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           S P++    + ID CG    +  +  +  ++ +  +T N+  +NS +       ++   +
Sbjct: 423 SDPDIISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAM 482

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +++ M   G+  ++ +YN ++ AC       LA ++   +  + A+GV   DV +Y++ 
Sbjct: 483 GLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQL---LTGMPARGVAP-DVISYNSA 538

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           ++     + W++AL++ + M + G  P+ I+++S + ACA +G   +A+ L ++M   G 
Sbjct: 539 IEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLKDMATVGL 598

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            PN+      + AC +  Q+D A R+                             K+ Q+
Sbjct: 599 TPNTVSYGAAIHACGKGEQWDVAVRIL----------------------------KEMQT 630

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
              TPN +                   TY+  + AC       +A  L+ ++R  GL+P+
Sbjct: 631 HGATPNLI-------------------TYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPD 671

Query: 548 HISWTILIDA 557
             ++  +I A
Sbjct: 672 AQTYLTVISA 681



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 145/357 (40%), Gaps = 55/357 (15%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   I + + +    K R    A+   +   +    P+      +ID C   G ++++ 
Sbjct: 213 VPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAM 272

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            +   + + ++  ++  ++S++         K  +++ + M+  GV  ++ SYN  + AC
Sbjct: 273 DLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDAC 332

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
                   A ++  E+  +     L   V +Y++     A    W  AL++ ++M + G+
Sbjct: 333 AKGDRWKEALDLLREMTTVG----LVPTVISYNSATAACAVNGRWVEALELLKEMPAQGI 388

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PNTI+++S ++ACA  G  E+A+ L   M   G +P+    N  + AC    Q++ A  
Sbjct: 389 APNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVE 448

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           L R                            +  +   TPN +                 
Sbjct: 449 LLR----------------------------EMPTAGLTPNVI----------------- 463

Query: 515 TTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             TYN  ++AC     +     L  EM T GLSPN +++  +IDAC      E A+Q
Sbjct: 464 --TYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQ 518



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 118/272 (43%), Gaps = 32/272 (11%)

Query: 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           L+     D +  L      +  G   D  SYNI + AC        A  +   ++ +  +
Sbjct: 83  LLEAKGRDWRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRL---LREMPTE 139

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA--GVTPNTITWSSLINACANAGLV 414
           GV   DV TY++ +   +    W+ A+ +   M++   G+TP+ +T++S I AC+N G  
Sbjct: 140 GVTP-DVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRW 198

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG 474
           ++AM L E+M+  G  PN    N  + AC +  +++ A  L     + +        Y+ 
Sbjct: 199 KEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEE-VIEQGFPPSTRTYNP 257

Query: 475 NTDRISN----MEHKD--KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
             D  +     +E  D   Q +TN    +P    S              Y+ ++ AC   
Sbjct: 258 VIDACAKGGRWLEAMDLLGQMLTND---IPADVIS--------------YSSVIAACGRG 300

Query: 529 --YYRVKALMNEMRTVGLSPNHISWTILIDAC 558
             +     L+ +MRT G+SPN IS+   IDAC
Sbjct: 301 RRWKEAMDLLEQMRTQGVSPNVISYNSAIDAC 332


>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
 gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 287

 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 149/320 (46%), Gaps = 61/320 (19%)

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKN 314
           Y   T+I  CG      ++  +  ++RS+ +  N++ +++LMNV   A++L    +VYK 
Sbjct: 1   YTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQ 60

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA---KGVLKLDVFTYSTIVK 371
           M + G   ++ +YNIL+       +   ++    E + L     +  ++ +V TY+T++ 
Sbjct: 61  MLEEGCSPNLVTYNILI-------DVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVIS 113

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               +   + ALKV E ML+AGV P+  T+++LI+A    G VE+A+ +F +M++ GCE 
Sbjct: 114 ACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCER 173

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           N    + L+ AC +A +++ A  LF                       S M HK+     
Sbjct: 174 NVITYSSLISACEKAGRWEMALELF-----------------------SKM-HKE----- 204

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHI 549
                             + KP   TYN L+ AC    +  KA  L  +M+T G  P+ I
Sbjct: 205 ------------------NCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSI 246

Query: 550 SWTILIDACGGSGNVEGALQ 569
           ++  LI A    G    AL+
Sbjct: 247 TYCGLITAYERGGQWRRALK 266



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 93/182 (51%), Gaps = 6/182 (3%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKL 318
           T+I  C   G   ++  +YE + +  V  +   + +L++       ++  L+++++M + 
Sbjct: 110 TVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRR 169

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   ++ +Y+ L+ AC  AG   +A E++ ++     K   K +V TY++++   +    
Sbjct: 170 GCERNVITYSSLISACEKAGRWEMALELFSKMH----KENCKPNVVTYNSLIAACSHGGH 225

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           W+ A ++ E M + G  P++IT+  LI A    G   +A+  FE+M   GC P++   N 
Sbjct: 226 WEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNS 285

Query: 439 LL 440
           L+
Sbjct: 286 LM 287


>gi|168024390|ref|XP_001764719.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684013|gb|EDQ70418.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1020

 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 130/577 (22%), Positives = 235/577 (40%), Gaps = 117/577 (20%)

Query: 10  SSSSAIVATQTRLYNHRNKPNKHP--VTKLFPLASSSSLSSIPTVHSSQTALLSTVRRDL 67
           S S+A V  +T    H  KP   P  V KL  +AS   L         +  LLST     
Sbjct: 166 SYSTARVLQET--ATHGGKPTTSPKVVAKLDSVASEKLL---------RPKLLST----- 209

Query: 68  SSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG 127
                   D+   + K GR+   A I E + +  G   KF   L   ++ +G +K     
Sbjct: 210 --------DVVKSVRKKGRVLP-ASIAEVLPLKPGTSIKFYIDLYASLLKAGRIK----- 255

Query: 128 RIDCVV--GVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185
             DC+V  G + KL++L +  +++     +++ K +       G VE      +++  + 
Sbjct: 256 --DCLVLLGEINKLDKLSL--MKVNHSKFYEVCKTK-------GTVEDAFTFAKIMRVY- 303

Query: 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP----RADILFCNFV----REFGKKRDL 237
                L     ++ +C +  D++ A+R   +V     +AD +F   +     + GK   L
Sbjct: 304 ---STLQHYTMLLSVCCHAKDIDGALRVLALVESRGFKADCVFYTTLISACSKAGKVDLL 360

Query: 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
              L   D +       N++    +ID C   G   K+   Y  + S++V  +  +FN+L
Sbjct: 361 FQILHEMDVAGVEA---NVHTFGAMIDGCARAGQLPKAFGAYGIMISKDVKPDRVIFNTL 417

Query: 298 MN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           +N    V A    F +      +   V  D  +Y  L+ AC   G    A E+Y  ++  
Sbjct: 418 INACSRVGAVQRAFDVLADMKSEATPVKPDHVTYGALISACAKGGEVGRALEVYQSMREN 477

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
           + KG L      Y+  V   +       AL + +D+L  GV P+ + +S+L++A  ++G 
Sbjct: 478 DVKGFLA----CYTAAVHACSQKGDLDYALAIYDDLLKDGVKPDEVFFSALVDAAGHSGD 533

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
           V++A  + + M ++G +P +   + L+  C    ++++   ++     SK          
Sbjct: 534 VDKAFSILDIMRKSGMKPGAVVYSSLMGVCSNLGEWEKGLEVYEGIRSSK---------- 583

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYR 531
                                                 +PT +TYN LM A C    + R
Sbjct: 584 -------------------------------------LRPTVSTYNALMTALCEAKQFDR 606

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             +++N+++  G +PN +S++IL+ AC   G  + AL
Sbjct: 607 ALSVLNDLKDAGRTPNQVSYSILLKACEREGKADMAL 643



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 159/394 (40%), Gaps = 56/394 (14%)

Query: 73  YYADMASKLAKDGRLEEFAMIVESVVVS--EGNVSKFASMLSLEMVASGIVKSIREGRID 130
           +Y  + S  +K G+++    I+  + V+  E NV  F +M         I    R G++ 
Sbjct: 343 FYTTLISACSKAGKVDLLFQILHEMDVAGVEANVHTFGAM---------IDGCARAGQLP 393

Query: 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE 190
              G    +    V P  +     F  L N C R+   G V+    ++  ++    PVK 
Sbjct: 394 KAFGAYGIMISKDVKPDRVI----FNTLINACSRV---GAVQRAFDVLADMKSEATPVK- 445

Query: 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250
                         PD    + Y  +     I  C    E G+  ++  ++R  D     
Sbjct: 446 --------------PD---HVTYGAL-----ISACAKGGEVGRALEVYQSMRENDVK--- 480

Query: 251 LSSPNMYICRTI-IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKF 307
                   C T  +  C   GD   + AIY+DL    V  +   F++L++   H  D+  
Sbjct: 481 ----GFLACYTAAVHACSQKGDLDYALAIYDDLLKDGVKPDEVFFSALVDAAGHSGDVDK 536

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
              +   M+K G+      Y+ L+  C   G      E+Y  ++  +    L+  V TY+
Sbjct: 537 AFSILDIMRKSGMKPGAVVYSSLMGVCSNLGEWEKGLEVYEGIRSSK----LRPTVSTYN 592

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            ++    +AK +  AL V  D+  AG TPN +++S L+ AC   G  + A+ L+      
Sbjct: 593 ALMTALCEAKQFDRALSVLNDLKDAGRTPNQVSYSILLKACEREGKADMALDLYTTARAE 652

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           G +PN   C+ ++  C++  Q   A  L  SW++
Sbjct: 653 GIKPNLVICDSIIGLCLQQIQTSVAAPLV-SWSI 685



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 25/211 (11%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           ++ F   V   G   D+  A    D  +K    P   +  +++ VC   G++ K   +YE
Sbjct: 518 EVFFSALVDAAGHSGDVDKAFSILDIMRKSGMKPGAVVYSSLMGVCSNLGEWEKGLEVYE 577

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +RS  +   +  +N+LM     A      L V  +++  G   +  SY+ILLKAC   G
Sbjct: 578 GIRSSKLRPTVSTYNALMTALCEAKQFDRALSVLNDLKDAGRTPNQVSYSILLKACEREG 637

Query: 339 NTVLAQEIYG-----------------------EVKHLEAKGVLKLDVFTYSTIVKVFAD 375
              +A ++Y                        +++   A  ++   +   +    + + 
Sbjct: 638 KADMALDLYTTARAEGIKPNLVICDSIIGLCLQQIQTSVAAPLVSWSILPPADNSNISSQ 697

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
            +W   AL +    + AGV P     S L+ 
Sbjct: 698 QQWVTWALTIYRQTIEAGVLPTVEILSQLLG 728


>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
          Length = 659

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 149/342 (43%), Gaps = 59/342 (17%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           ++RD   AL   DA    L   ++      I  CG    + ++  +  +++++ +  ++ 
Sbjct: 206 RRRDWTRALTVLDAP---LIEVDVVGFTMAIKACGQARRWREALGVLREMQARGLRPDLV 262

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            FN+ M+    A      LE++  ++  G   ++ SYN  + AC  AG    A E+  E+
Sbjct: 263 SFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREM 322

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNTITWSSLINACA 409
           + L     ++ D  +Y+T++  FA    W+ AL++  +M  A GV P+ I++++ ++ CA
Sbjct: 323 QGLS----VRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCA 378

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
            AG  E+A  L  E L  G +P+    N ++ AC  A ++ +A  LF           + 
Sbjct: 379 KAGRWERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDLF----------GMM 428

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CT 527
           E+     DR+S                                     +N  M AC    
Sbjct: 429 EEVGVAPDRVS-------------------------------------FNTAMHACNRAL 451

Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +     ++ EM    ++PN  S+TI +DACG +G  E AL+
Sbjct: 452 KWQAALQILREMEARSIAPNVKSYTIAVDACGRAGEWERALE 493



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 151/352 (42%), Gaps = 43/352 (12%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   ++  G+ R    AL      +     P++    T +D  G  G Y  +  ++ +
Sbjct: 227 VGFTMAIKACGQARRWREALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALELFTE 286

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +       N+  +N+ ++    A  +    E+ + MQ L V  D  SYN ++ A      
Sbjct: 287 IEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAFAKKNQ 346

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A E+  E+K  EA GV   D+ +Y+T + V A A  W+ A ++  + L  G+ P+ +
Sbjct: 347 WKAALELLAEMK--EAPGV-DPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPDVV 403

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR-- 457
           +++++++AC  AG   QA+ LF  M + G  P+    N  + AC  A ++  A ++ R  
Sbjct: 404 SYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREM 463

Query: 458 ----------SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
                     S+T++        +++   + +  ME      +   P    N H      
Sbjct: 464 EARSIAPNVKSYTIAVDACGRAGEWERALELMEEME------VRGVP---ANVH------ 508

Query: 508 RFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDA 557
                    TY   M ACC      RV  L+ EM   G+ PN +S+TI +DA
Sbjct: 509 ---------TYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMDA 551



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 7/225 (3%)

Query: 231 FGKKRDLVSALRAYDASKKHLS-SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           F KK    +AL      K+     P++    T + VC   G + ++  +  +   Q +  
Sbjct: 341 FAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQP 400

Query: 290 NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           ++  +N++M+    A +    L+++  M+++GV  D  S+N  + AC  A     A +I 
Sbjct: 401 DVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQI- 459

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             ++ +EA+ +   +V +Y+  V     A  W+ AL++ E+M   GV  N  T+++ ++A
Sbjct: 460 --LREMEARSIAP-NVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDA 516

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           C   G V++ + L EEM   G EPN     I + A     ++DRA
Sbjct: 517 CCRGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDRA 561



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 89/182 (48%), Gaps = 6/182 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P++    T++  CG  G+Y+++  ++  +    V  +   FN+ M+     LK+   L++
Sbjct: 400 PDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQI 459

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M+   +  ++ SY I + AC  AG    A E+   ++ +E +GV   +V TY+  + 
Sbjct: 460 LREMEARSIAPNVKSYTIAVDACGRAGEWERALEL---MEEMEVRGV-PANVHTYTAAMD 515

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                      L + E+M   GV PN ++++  ++A    G  ++A  + E+M+Q G   
Sbjct: 516 ACCRGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDRASAVLEQMVQRGLRL 575

Query: 432 NS 433
           +S
Sbjct: 576 DS 577


>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 607

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 147/313 (46%), Gaps = 24/313 (7%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +P++    + I  CG  G + ++  ++ED+R+  V  ++  + S +    N    K  + 
Sbjct: 170 APDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVS 229

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + + +  +G+  ++ SY+ ++ AC   G   +A ++  E+K +     L  ++ TY+  +
Sbjct: 230 LLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMR----LAPNIITYNAAI 285

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
              A    W+ A+ +  +M + G+ P+ +++SS+I+AC+     ++A+ +  EM   G  
Sbjct: 286 DACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLS 345

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSW-TLSKTQVALGEDYDGNTDRISNMEH-KDKQ 488
           PN+   N  + AC +  Q+  A  L R   T   TQ  +G  Y+      +  E  K+  
Sbjct: 346 PNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIG--YNSAIAACAKGEQWKEAL 403

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSP 546
           ++      +P               T  +Y+  + AC     + + K L+ EM TVGL+P
Sbjct: 404 ALLRE---MPT---------VGLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVGLAP 451

Query: 547 NHISWTILIDACG 559
           N + +   IDACG
Sbjct: 452 NEVCYNSAIDACG 464



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 162/407 (39%), Gaps = 75/407 (18%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY---------MK 274
           +C  +   G+      A+R         ++P++     +ID C   G +         M 
Sbjct: 36  YCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMP 95

Query: 275 SRAIYEDLRS--------------------------QNVTLNIYVFNSLMN--VNAHDLK 306
           ++ I  D RS                          ++VT N+ ++NS +N    A   +
Sbjct: 96  TKGIAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWE 155

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             + + K M  +G+  D+ SY+  + AC   G    A E++   + +   GV   DV TY
Sbjct: 156 IAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELF---EDMRTSGVAP-DVITY 211

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
            + +   A+   W+ A+ +   + + G+TPN I++SS+I ACA  G  + A+ L  EM  
Sbjct: 212 GSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKA 271

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNME 483
               PN    N  + AC +  ++  A  L R        V L  D   Y    D  S  +
Sbjct: 272 MRLAPNIITYNAAIDACAKGGRWKEAIDLLR----EMPTVGLPPDVVSYSSVIDACSKGD 327

Query: 484 H--------KDKQSITNTPNFVP-NSHYSSFDKRFSFK---------PTTTT------YN 519
                    ++  ++  +PN +  NS   +  K   +K         PT         YN
Sbjct: 328 RWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYN 387

Query: 520 ILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
             + AC     +    AL+ EM TVGL     S++  IDAC G GN+
Sbjct: 388 SAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDAC-GKGNL 433



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 132/312 (42%), Gaps = 24/312 (7%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +PN+      ID C   G + ++  +  ++ +  +  ++  ++S+++        K  ++
Sbjct: 275 APNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAID 334

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + + M  +G+  +  SYN  + AC   G     +E  G ++ +   GV +  V  Y++ +
Sbjct: 335 ILREMPTVGLSPNAISYNSAIDACAKGGQW---KEAKGLLREMPTAGVTQ-RVIGYNSAI 390

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
              A  + W+ AL +  +M + G+     ++SS I+AC    L  +A  L  EM   G  
Sbjct: 391 AACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVGLA 450

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD--KQ 488
           PN  C N  + AC    Q++ A  L R        V L  D    +  I+     D  K+
Sbjct: 451 PNEVCYNSAIDACGRGDQWEEAVDLLR----EMPTVGLSPDVFSYSSAIAACAKGDQWKE 506

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSP 546
           ++                      P    YN  + AC     +    AL+ EMR  GL+P
Sbjct: 507 ALAVLKEM----------SAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTP 556

Query: 547 NHISWTILIDAC 558
           N IS++  IDAC
Sbjct: 557 NIISYSSAIDAC 568



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 33/237 (13%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLE 310
           SPN     + ID C   G + +++ +  ++ +  VT  +  +NS +   A     K  L 
Sbjct: 345 SPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALA 404

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL----------------- 353
           + + M  +G+   + SY+  + AC      + A+E+  E+  +                 
Sbjct: 405 LLREMPTVGLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACG 464

Query: 354 ------EAKGVLK--------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
                 EA  +L+         DVF+YS+ +   A    W+ AL V ++M +AG+ P+ I
Sbjct: 465 RGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLI 524

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            ++S I+AC+  G  + A+ L  EM  AG  PN    +  + ACV   Q+     L 
Sbjct: 525 CYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYSSAIDACVRGGQWKEGIALL 581



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 95/187 (50%), Gaps = 6/187 (3%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKL 318
           + ID CG    ++K++ +  ++ +  +  N   +NS ++      ++   +++ + M  +
Sbjct: 423 SAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTV 482

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  D+ SY+  + AC         +E    +K + A G L  D+  Y++ +   +    
Sbjct: 483 GLSPDVFSYSSAIAACAKGDQW---KEALAVLKEMSAAG-LAPDLICYNSAIDACSKGGR 538

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           W+MA+ +  +M +AG+TPN I++SS I+AC   G  ++ + L EEM  +G  P+    + 
Sbjct: 539 WKMAVALLGEMRAAGLTPNIISYSSAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHA 598

Query: 439 LLQACVE 445
           L+  C +
Sbjct: 599 LMVTCAK 605



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 49/211 (23%)

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
           +D  +Y   +        W+ A+++  +M + G  P+   +S++I+ACA  G  + A+  
Sbjct: 31  IDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFF 90

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
             EM   G  P+++     + AC    ++  A  L R                       
Sbjct: 91  LMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLR----------------------- 127

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNE 538
            M  +D      TPN +                    YN  + +C     +    +L+ E
Sbjct: 128 EMLARDV-----TPNVI-------------------IYNSAINSCAKAGQWEIAVSLVKE 163

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           M TVGL+P+ IS++  I ACG  G  E AL+
Sbjct: 164 MATVGLAPDVISYSSAISACGRGGRWEEALE 194


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 160/347 (46%), Gaps = 21/347 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
           +   V  +G+      AL+ + A KK    PN+    TIID CG  G D  ++  I++++
Sbjct: 238 YSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDEM 297

Query: 283 RSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           + + V  +   FNSL+ V +     + +  V+  MQ+ G+  D+ ++N L+ A C  G  
Sbjct: 298 QKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQM 357

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
            LA  I   +  +  K +   +V TYST++  +     ++ A+ +  DM  +GV P+ ++
Sbjct: 358 ELAASI---MTTMRGKNI-SPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVS 413

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +++LI+  A  G  + A+   ++M + G + +    N L+ A  +  ++  A  LF    
Sbjct: 414 YNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMK 473

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
                   GE    N    S +   D  S       V N  ++ F KR   KP    Y+ 
Sbjct: 474 --------GEGLVPNVLTYSAL--IDSYSKAGMHQDVSNV-FTEF-KRAGLKPDVVLYSS 521

Query: 521 LMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           L+ +CC       A  L+ EM   G+ PN +++  LIDA G  G  +
Sbjct: 522 LIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQAD 568



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 141/295 (47%), Gaps = 20/295 (6%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           SPN+    T+ID  G  G + ++ ++Y D++   V  +   +N+L+++ A   +F   L 
Sbjct: 373 SPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALI 432

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
             K+M+++G+ AD+ +YN L+ A    G    A  ++ ++K    +G++  +V TYS ++
Sbjct: 433 ACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMK---GEGLVP-NVLTYSALI 488

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             ++ A   Q    V  +   AG+ P+ + +SSLI++C   GLVE A+ L +EM QAG +
Sbjct: 489 DSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQ 548

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN    N L+ A     Q D+         L   +  +        +R   +  K   S 
Sbjct: 549 PNIVTYNSLIDAYGRYGQADK---------LEAVKANMPNSVQKIGERSMEVVRKPPPSQ 599

Query: 491 TNTPNFVPN-SHYSSFD--KRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMR 540
            N  +     +  S F   ++F  KP   T++ ++ AC  C        L+ +MR
Sbjct: 600 QNASDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCASLQEASVLLEQMR 654



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 50/210 (23%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL-VEQAMHL 420
           +V+ YS +V  +  +   + ALKV + M  AG  PN IT++++I+AC   G+ ++QA+ +
Sbjct: 234 NVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDI 293

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
           F+EM + G EP+    N L+  C     ++ + R+F                       +
Sbjct: 294 FDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVF-----------------------A 330

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNE 538
            M+                        R   +    T+N L+ A C         ++M  
Sbjct: 331 EMQ------------------------RRGIEQDIFTFNTLIDAVCKGGQMELAASIMTT 366

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           MR   +SPN ++++ +ID  G  G  E A+
Sbjct: 367 MRGKNISPNVVTYSTMIDGYGKLGCFEEAI 396


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 153/340 (45%), Gaps = 55/340 (16%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           + ++L   LR  D S       N     T+I  CG      ++  +  ++RS+ +  N++
Sbjct: 172 RAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQCNVH 231

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +++LMNV    ++L   L+VY+ M   G   ++ +YN L+    + G T   +E    +
Sbjct: 232 TYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLID---VYGKTGAWEEAIRVL 288

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
             LE +G+   ++ TY+T++     +   Q AL++ E ML+AG  P   T+++LI+A   
Sbjct: 289 DALERQGI-DPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGK 347

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G +++A+ +F++M++ GCE N    + L+ AC +A +++ A  LFR             
Sbjct: 348 NGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALELFREM----------- 396

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TD 528
                        H +                         +P   TYN L+ AC     
Sbjct: 397 -------------HTE-----------------------GCRPNVVTYNSLIAACAQGAQ 420

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           + + + +  +M+  G  P+ +++  LI A   +G+   AL
Sbjct: 421 WEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRAL 460



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 8/227 (3%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K  +L  AL  Y        +PN+    T+IDV G  G + ++  + + L  Q +   I 
Sbjct: 242 KGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIR 301

Query: 293 VFNSLM---NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
            +N+++   N++    +  L +Y+ M   G      +Y  L+ A    G    A +I+  
Sbjct: 302 TYNTVIIACNMSGQ-AQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIF-- 358

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
            + +  +G  + +V TYS+++     A  W++AL++  +M + G  PN +T++SLI ACA
Sbjct: 359 -QDMVRRGCER-NVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACA 416

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
                E+A  +FE+M   GC+P++     L+ A   A  + RA   F
Sbjct: 417 QGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAF 463



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 107/223 (47%), Gaps = 6/223 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  +GK      A+R  DA ++    P +    T+I  C + G   ++  IYE 
Sbjct: 266 VTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYER 325

Query: 282 LRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + +         + +L++    +  L   L+++++M + G   ++ +Y+ L+ AC  AG 
Sbjct: 326 MLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGR 385

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             LA E++ E+ H E     + +V TY++++   A    W+ A ++ E M   G  P+ +
Sbjct: 386 WELALELFREM-HTEG---CRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAV 441

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           T+  LI A   AG   +A+  FE+M    C P+S   N ++ A
Sbjct: 442 TFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGA 484



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 92/195 (47%), Gaps = 12/195 (6%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I+ CN     G+ ++   ALR Y+      + P       +I   G  G   ++  I++D
Sbjct: 307 IIACNMS---GQAQE---ALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQD 360

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +    N+  ++SL++    A   +  LE+++ M   G   ++ +YN L+ AC     
Sbjct: 361 MVRRGCERNVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQ 420

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              AQE++ +++H   +G  K D  T+  ++  +  A  W+ AL   E M +    P+++
Sbjct: 421 WEKAQEMFEQMQH---RGC-KPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSV 476

Query: 400 TWSSLINACANAGLV 414
            +++++ A    GLV
Sbjct: 477 VYNTIVGALWKTGLV 491


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 151/352 (42%), Gaps = 55/352 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           L  + +  F K  D   A+R    ++ +  +P       +I   G  G   ++ A++E++
Sbjct: 243 LMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEI 302

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           R   +      +N+L+   V    LK    V   M+K GV  D  +Y++L+     AG  
Sbjct: 303 RENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRW 362

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A+ +   +K +EA  V + + + +S I+  + D   WQ + +V +DM S+GV P+   
Sbjct: 363 ESARIV---LKEMEASNV-QPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHF 418

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++ +I+       ++ AM  FE ML  G  P+    N L+    ++ + D A  LF    
Sbjct: 419 YNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELF---- 474

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
                              S M+ +                         + P  TTYNI
Sbjct: 475 -------------------SEMQQR------------------------GYSPCITTYNI 491

Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           ++ +      + +V A +++M++ GL PN I++T L+D  G SG    A++C
Sbjct: 492 MINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIEC 543



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 116/240 (48%), Gaps = 17/240 (7%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSS---PNMYICRTIIDVCGI--CGDYMKSRAIYED 281
           F R     RD     +++   K   SS   P+ +    +ID  G   C D+  + A +E 
Sbjct: 384 FSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDH--AMATFER 441

Query: 282 LRSQNVTLNIYVFNSLMNVN----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           + S+ +  +I  +N+L++ +     HD+    E++  MQ+ G    + +YNI++ +    
Sbjct: 442 MLSEGIPPDIVTWNTLIDCHCKSGRHDM--AEELFSEMQQRGYSPCITTYNIMINSM--- 496

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G     +++   +  ++++G L+ +  TY+T+V V+  +  +  A++  E + S G  P 
Sbjct: 497 GEQQRWEQVTAFLSKMQSQG-LQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPT 555

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           +  +++LINA A  GL E A++ F  M   G  P+    N L+ A  E  +   AF + +
Sbjct: 556 STMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQ 615



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 132/323 (40%), Gaps = 42/323 (13%)

Query: 274 KSRAIYED-LRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNIL 330
           +S  +YE  L SQ   L    +N+L+   A   D++  L +   M++ G   D  +Y+ +
Sbjct: 151 RSEKLYEAFLLSQRQVLTPLTYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSI 210

Query: 331 LKACCLAG--NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           ++    +   ++ + Q++Y E++       +++D    + I+  F+ A     A++    
Sbjct: 211 IQYLTRSNKIDSPILQKLYAEIE----TDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAM 266

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
             S G+ P   T  ++I A  N+G   +A  LFEE+ + G EP ++  N LL+  V    
Sbjct: 267 AQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGS 326

Query: 449 FDRAFRLFRSWTLSKTQVALGED-YDGNTDRISNMEHKDKQSIT----NTPNFVPNSHYS 503
              A   F    + K  V   E  Y    D  ++    +   I        N  PNS+  
Sbjct: 327 LKDA--EFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVF 384

Query: 504 S-----------FDKRFSF---------KPTTTTYNILM----KACCTDYYRVKALMNEM 539
           S           + K F           +P    YN+++    K  C D+    A    M
Sbjct: 385 SRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDH--AMATFERM 442

Query: 540 RTVGLSPNHISWTILIDACGGSG 562
            + G+ P+ ++W  LID    SG
Sbjct: 443 LSEGIPPDIVTWNTLIDCHCKSG 465



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 86/192 (44%), Gaps = 6/192 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LE 310
           SP +     +I+  G    + +  A    ++SQ +  N   + +L++V     +F+  +E
Sbjct: 483 SPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIE 542

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
             + ++  G       YN L+ A    G + LA   +   + +  +G L   +   ++++
Sbjct: 543 CLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAF---RLMTTEG-LTPSLLALNSLI 598

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F + +    A  V + M    + P+ +T+++L+ A       ++   ++EEM+ +GC 
Sbjct: 599 NAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVASGCT 658

Query: 431 PNSQCCNILLQA 442
           P+ +   +L  A
Sbjct: 659 PDRKARAMLRSA 670



 Score = 38.9 bits (89), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 14/176 (7%)

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           +TP  +T+++LI ACA  G VE+A++L  +M + G +P+    + ++Q    + + D   
Sbjct: 167 LTP--LTYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPI 224

Query: 454 --RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
             +L+      K ++      DG+      +        T    F+  +  +  +     
Sbjct: 225 LQKLYAEIETDKIEI------DGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNP---- 274

Query: 512 KPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           KP+T    IL        +  +AL  E+R  GL P   ++  L+     +G+++ A
Sbjct: 275 KPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDA 330


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 199/448 (44%), Gaps = 62/448 (13%)

Query: 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGL 177
           S IV   + G+ +  V +L+++  LG+ P    D + F      C +   SG    +   
Sbjct: 360 SAIVACGKGGQWEKAVELLREVTALGLTP----DATSFNSAIAACTK---SGR---WKEA 409

Query: 178 MEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237
           +E+L+E  +P K L            KPD   AI Y      + I  C      G + ++
Sbjct: 410 LELLKE--MPAKRL------------KPD---AISY-----NSAIEACGK----GGQWEM 443

Query: 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
              LR    +K    +PN+      I  CG  G + +   +   + +Q +T N+  +NS 
Sbjct: 444 ALELRRQMPTKGL--TPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSA 501

Query: 298 MNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           +       ++   L++   M++L +  D  +YN  + AC   G     +E    ++ +  
Sbjct: 502 IKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRW---KEAVALLREMPG 558

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +G L  DV +Y+  +  +     W+ A+++   M + G+TPN IT++S+I AC   G  E
Sbjct: 559 QG-LTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWE 617

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
           +A+ L +E+ +    P+    N+ + AC +  +++ A  L R          L  D    
Sbjct: 618 KALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLR----EMPAEGLTPDVISY 673

Query: 476 TD--RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK 533
           T   R  N E + ++++    N +  +H           PT T+Y++ ++AC     R +
Sbjct: 674 TSAIRACNAEGEWEKAL-GLLNLM-GAH--------GVSPTATSYSLAIEACGKGGRREE 723

Query: 534 A--LMNEMRTVGLSPNHISWTILIDACG 559
           A  L+ EM   GLS  +IS +++++A G
Sbjct: 724 AVCLVREMAQRGLSHRNISNSLIVEALG 751



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 146/342 (42%), Gaps = 58/342 (16%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           G+ ++ V  LR  ++      +P++      I  CG  G +  S  + +++  + V  N 
Sbjct: 299 GRWKEAVEVLRQMESQG---VTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNT 355

Query: 292 YVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             FNS +       ++   +E+ + +  LG+  D  S+N  + AC  +G    A E+   
Sbjct: 356 IHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALEL--- 412

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +K + AK  LK D  +Y++ ++       W+MAL+++  M + G+TPN I+ +  I AC 
Sbjct: 413 LKEMPAK-RLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACG 471

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
             G  ++ + L  +M   G  PN    N  ++ C +  Q+++A                 
Sbjct: 472 ERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKAL---------------- 515

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD- 528
                  D ++ M                        K  +  P + TYN  + AC    
Sbjct: 516 -------DLLAKM------------------------KELAMTPDSITYNSAIAACSKRG 544

Query: 529 -YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +    AL+ EM   GL+P+ IS+T  IDA G +G  E A++
Sbjct: 545 RWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVE 586



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 131/320 (40%), Gaps = 55/320 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P+     + I  CG  G + +   +  ++ S  +T +   +NS++     +   K  L V
Sbjct: 213 PDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSV 272

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M   G+  +  SYN+ ++AC  +G    A E+   ++ +E++GV   DV +Y   +K
Sbjct: 273 LTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEV---LRQMESQGVTP-DVISYDAAIK 328

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                  W+ ++ + ++M   GV PNTI ++S I AC   G  E+A+ L  E+   G  P
Sbjct: 329 ACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTP 388

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           ++   N  + AC ++ ++  A  L +                        M  K      
Sbjct: 389 DATSFNSAIAACTKSGRWKEALELLK-----------------------EMPAK------ 419

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549
                               KP   +YN  ++AC     +     L  +M T GL+PN I
Sbjct: 420 ------------------RLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVI 461

Query: 550 SWTILIDACGGSGNVEGALQ 569
           S  I I ACG  G  +  L+
Sbjct: 462 SSNIAIRACGERGRWQEGLE 481



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 49/248 (19%)

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV-KEDMLSAGVT 395
           A  T   +E  G +  ++  GV+     +Y+T +        W+ AL++ +E     GV+
Sbjct: 120 AATTGKWREALGILDEMKEGGVV--CAHSYTTAITTCGRQGQWEKALELLREIPEQEGVS 177

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN   ++S I AC +    E A+ L  EM      P+    N  ++AC    Q++R   L
Sbjct: 178 PNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGL 237

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP-NSHYSSFDKRFSFK-- 512
            R                            +  S+  TP+ +  NS  +   K   +K  
Sbjct: 238 LR----------------------------EMPSVGLTPDAITYNSVITGCGKEGQWKEA 269

Query: 513 -------------PTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
                        P T +YN+ ++AC     +     ++ +M + G++P+ IS+   I A
Sbjct: 270 LSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKA 329

Query: 558 CGGSGNVE 565
           CGG G  E
Sbjct: 330 CGGGGQWE 337


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 147/344 (42%), Gaps = 55/344 (15%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           F K  DL  AL      +    S        +I   G CG  +++ AI+E++R   +   
Sbjct: 280 FAKAGDLSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPR 339

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
              +N+L+   V A  LK    V   M++ GV  +  +Y+ L+ A   AG    A+ +  
Sbjct: 340 TRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIV-- 397

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            +K +EA  V + + + +S I+  + D   WQ + +V  +M ++GV P+ + ++ +I+  
Sbjct: 398 -LKEMEASNV-QPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTF 455

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468
                ++ AM  F+ ML  G EP++   N L+     A + DRA  LF            
Sbjct: 456 GKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFE----------- 504

Query: 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
            E  +G                                    + P  TT+NI++ +    
Sbjct: 505 -EMMEG-----------------------------------GYSPCNTTFNIMINSFGDQ 528

Query: 529 --YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
             +  VK L+  MR+ GL PN +++T LID  G SG    A++C
Sbjct: 529 ERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIEC 572



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 142/354 (40%), Gaps = 75/354 (21%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           SPN      +ID  G  G +  +R + +++ + NV  N YVF+ +++   +  + + + +
Sbjct: 372 SPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQ 431

Query: 311 VYKNMQKLGVMADMASYNI-----------------------------------LLKACC 335
           V + M+  GV  D   YN+                                   L+   C
Sbjct: 432 VLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHC 491

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            AG    A+E++ E+     +G       T++ ++  F D + W     +   M S G+ 
Sbjct: 492 RAGKHDRAEELFEEM----MEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLV 547

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDRA 452
           PN++T+++LI+    +G    A+   ++M  AG +P+S   N L+ A  +   + Q   A
Sbjct: 548 PNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSA 607

Query: 453 FRLFRSWTLSKTQVAL-------GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
           FR  R   L  + +AL       GED             +D ++ T             +
Sbjct: 608 FRAMRVDGLKPSLLALNSLINAFGED------------RRDAEAFT----------VLQY 645

Query: 506 DKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
            K    KP   TY  LMKA      + +V ++  EM   G +P+  +  +L  A
Sbjct: 646 MKENDLKPDVVTYTTLMKALIRVEKFDKVPSVYEEMILSGCTPDRKARAMLRSA 699



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 143/317 (45%), Gaps = 42/317 (13%)

Query: 274 KSRAIYED-LRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNIL 330
           +S  +YE  L SQ   L    +N+L++  A  +DL+  L +   M++ G  +D  +Y+++
Sbjct: 180 QSEKLYEAFLLSQRQNLTPLTYNALISACARNNDLEKALNLITRMRQDGYPSDFVNYSLI 239

Query: 331 LKACCLAG--NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           +++       ++ + Q++Y E++       L+LDV   + I+  FA A     AL+    
Sbjct: 240 IRSLMRKNRVDSAILQKLYREIEC----DKLELDVQLSNDIIVGFAKAGDLSKALEFLGV 295

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           +  +G++  T T  ++I A  N G   +A  +FEEM   G +P ++  N LL+  V+A  
Sbjct: 296 VQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGL 355

Query: 449 FDRAFRLFRSWTLSKTQVALGE-------DYDGNTDR-------ISNMEHKDKQSITNTP 494
              A   F    + ++ V+  E       D  GN  R       +  ME  + Q      
Sbjct: 356 LKDA--EFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVF 413

Query: 495 NFVPNSHYSSFDKRFSF-----------KPTTTTYNILM----KACCTDYYRVKALMNEM 539
           + + +S+    + + SF           +P    YN+++    K  C D+    A  + M
Sbjct: 414 SRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDH--AMATFDRM 471

Query: 540 RTVGLSPNHISWTILID 556
            + G+ P+ ++W  LID
Sbjct: 472 LSEGIEPDTVTWNTLID 488


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 151/352 (42%), Gaps = 55/352 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           L+ + +  F K  DL  AL      +    S       T+I   G CG   ++ AI+E++
Sbjct: 273 LWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEM 332

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           R   +      +N+L+   V A  L+    V   M++ GV+ +  +Y++L+ A    GN 
Sbjct: 333 RDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAY---GNA 389

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
              +     +K +EA  V + + + +S I+  + D   WQ   +V  +M  +GV P+ I 
Sbjct: 390 ERWESARIVLKEMEASNV-QPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIF 448

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++ LI+       ++ AM  F+ ML  G EP++   N L+    +A + DRA  LF    
Sbjct: 449 YNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFE--- 505

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
                                 E  +K                       + P  TT+NI
Sbjct: 506 ----------------------EMMEK----------------------GYLPCNTTFNI 521

Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           ++ +      +  VK L+  MR+ GL PN +++T LID  G SG  + A++C
Sbjct: 522 MINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIEC 573



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 137/311 (44%), Gaps = 26/311 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           PN Y+   I+      G++ K+  +  ++    V  +   +N L++     + L   +  
Sbjct: 409 PNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMAT 468

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M   G+  D  ++N L+   C AG    A+E++ E+     KG L  +  T++ ++ 
Sbjct: 469 FDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMME---KGYLPCNT-TFNIMIN 524

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F D + W     +  +M S G+ PN +T+++LI+    +G  + A+   ++M  AG +P
Sbjct: 525 SFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKP 584

Query: 432 NSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           +S   N LL A  +    D+A   F   R   L  + +AL        + + N   KD++
Sbjct: 585 SSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLAL--------NSLINAFGKDRR 636

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA--CCTDYYRVKALMNEMRTVGLSP 546
            +     FV       + K    KP   TY  LMKA      + +V ++  EM   G +P
Sbjct: 637 DVEA---FV----VLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPSVYEEMILSGCTP 689

Query: 547 NHISWTILIDA 557
           +  +  +L  A
Sbjct: 690 DRKARAMLRSA 700



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 149/328 (45%), Gaps = 42/328 (12%)

Query: 274 KSRAIYED-LRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNIL 330
           +S  +YE  L SQ   L    +N+L++  A  +D++  L +   M++ G  +D+ +Y+++
Sbjct: 181 QSEKLYEAFLLSQKQNLTPLTYNALISACARNNDIEKALNLICRMREDGYPSDLVNYSLI 240

Query: 331 LKACCL--AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           +++       N+ + Q+IY E+     +  L++DV  ++ I+  FA A     AL+    
Sbjct: 241 IRSLMKNNRANSSILQKIYREID----RDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGV 296

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           +  +G++  T T  ++I    N G  E+A  +FEEM   G +P ++  N LL+  V+A  
Sbjct: 297 VQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGL 356

Query: 449 F-DRAF---RLFRSWTLSKTQV-ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
             D  F    + RS  L   Q  +L  D  GN +R  +     K+      N  PN++  
Sbjct: 357 LRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKE--MEASNVQPNAYVF 414

Query: 504 S-----------FDKRFS---------FKPTTTTYNILM----KACCTDYYRVKALMNEM 539
           S           + K F           +P    YN+L+    K  C D+    A  + M
Sbjct: 415 SRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDH--AMATFDRM 472

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
            + G+ P+ I+W  L+D    +G  + A
Sbjct: 473 LSEGIEPDTITWNTLVDCHCKAGKHDRA 500



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 103/229 (44%), Gaps = 46/229 (20%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R D +F N  +  FGK   L  A+  +D        P+     T++D     G + ++  
Sbjct: 443 RPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEE 502

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           ++E++                                M+K G +    ++NI++      
Sbjct: 503 LFEEM--------------------------------MEK-GYLPCNTTFNIMI------ 523

Query: 338 GNTVLAQEIYGEVKHL----EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            N+   QE + +VK+L     ++G+L  +  TY+T++ ++  +  +  A++  +DM +AG
Sbjct: 524 -NSFGDQERWDDVKNLLTNMRSQGLLP-NAVTYTTLIDIYGKSGRFDDAIECLDDMKAAG 581

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           + P++  +++L+NA A  GL +QA+  F  M   G +P+    N L+ A
Sbjct: 582 LKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINA 630


>gi|428179078|gb|EKX47950.1| hypothetical protein GUITHDRAFT_136922 [Guillardia theta CCMP2712]
          Length = 714

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 156/355 (43%), Gaps = 46/355 (12%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314
           +++   T+I +C  CG Y ++ A+ E++ ++NV+ NIY FN+L+ V  + L  +L   K 
Sbjct: 189 DVFTFSTLISLCDRCGKYDEAFALKEEMDAKNVSPNIYTFNALIAVCKNSLATSLMSRKR 248

Query: 315 MQKL-------------GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
              L             G+  D+ +YN LL      G     +E Y  +  +E + V+  
Sbjct: 249 QNTLTIAQILFAEAKAAGLRPDIVTYNSLLGVYMEMGKW---KESYDILFEIEDQHVIT- 304

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           DV TYST++  FA  + + +A+++ E M+   V PN IT++SLI AC  A    QA   F
Sbjct: 305 DVITYSTLISTFAKTRKYSLAIEMYEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFF 364

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK------TQVAL------G 469
           ++M   G  PN    + ++ +C     +  AF LF      +      T  AL       
Sbjct: 365 DDMQAQGISPNVVTYSTMIASCRSKDNWVTAFDLFLEMIRKEIPPDPMTFSALLSVCQHS 424

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSH-----------YSSFD--KRFSFKPTTT 516
           + ++   D +  M+    Q   N   +    H           +   D  KR   KP   
Sbjct: 425 KQWEQAMDVLEWMQDAGIQ--LNIRMYSAVVHVCGQAGRLDDAFRILDECKRDGIKPNVI 482

Query: 517 TYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +  L+ AC    D  R   ++  M+   ++PN +++ +L+  C   GN   A Q
Sbjct: 483 MFTALIHACKVARDLDRAFRVLELMKEDHVTPNLVTFNVLLGTCEVVGNSTCAFQ 537



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 139/316 (43%), Gaps = 28/316 (8%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           T+I        Y  +  +YE +  + V  N+  +NSL+   + A++       + +MQ  
Sbjct: 311 TLISTFAKTRKYSLAIEMYEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQ 370

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  ++ +Y+ ++ +C    N V A +++ E+   E    +  D  T+S ++ V   +K 
Sbjct: 371 GISPNVVTYSTMIASCRSKDNWVTAFDLFLEMIRKE----IPPDPMTFSALLSVCQHSKQ 426

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           W+ A+ V E M  AG+  N   +S++++ C  AG ++ A  + +E  + G +PN      
Sbjct: 427 WEQAMDVLEWMQDAGIQLNIRMYSAVVHVCGQAGRLDDAFRILDECKRDGIKPNVIMFTA 486

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           L+ AC  A   DRAFR+            + ED+        N+       +  T   V 
Sbjct: 487 LIHACKVARDLDRAFRVLE---------LMKEDHVTPNLVTFNV-------LLGTCEVVG 530

Query: 499 NS----HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWT 552
           NS          + + F+    T+N L+K C   +   KA  + ++M+   + P+  ++ 
Sbjct: 531 NSTCAFQVVGLLQEYGFRANLQTFNTLIKTCVRSHEWQKAFEVYSQMQLQRIRPSLSTFN 590

Query: 553 ILIDACGGSGNVEGAL 568
            L  A    G+   A+
Sbjct: 591 ALSMAAEEGGDWRRAI 606



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/399 (19%), Positives = 159/399 (39%), Gaps = 70/399 (17%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I +   +  F K R    A+  Y+   +    PN+    ++I  C    ++ ++ A ++D
Sbjct: 307 ITYSTLISTFAKTRKYSLAIEMYEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFFDD 366

Query: 282 LRSQNVTLNI-----------------------------------YVFNSLMNVNAHDLK 306
           +++Q ++ N+                                     F++L++V  H  +
Sbjct: 367 MQAQGISPNVVTYSTMIASCRSKDNWVTAFDLFLEMIRKEIPPDPMTFSALLSVCQHSKQ 426

Query: 307 F--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           +   ++V + MQ  G+  ++  Y+ ++  C  AG    A  I  E K    +  +K +V 
Sbjct: 427 WEQAMDVLEWMQDAGIQLNIRMYSAVVHVCGQAGRLDDAFRILDECK----RDGIKPNVI 482

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            ++ ++     A+    A +V E M    VTPN +T++ L+  C   G    A  +   +
Sbjct: 483 MFTALIHACKVARDLDRAFRVLELMKEDHVTPNLVTFNVLLGTCEVVGNSTCAFQVVGLL 542

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL------------GEDY 472
            + G   N Q  N L++ CV + ++ +AF ++    L + + +L            G D+
Sbjct: 543 QEYGFRANLQTFNTLIKTCVRSHEWQKAFEVYSQMQLQRIRPSLSTFNALSMAAEEGGDW 602

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYY 530
               D + +M  K ++ +                      P+   YN L+ AC   ++Y 
Sbjct: 603 RRAIDVMVDMRIKTEKILIRMAGHT---------------PSVQAYNSLISACVKSSNYQ 647

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +   +   M+T G+  N +++ ++I    G   +   L+
Sbjct: 648 KAFDVYKGMKTSGVRANIVTYNLIISILSGQRKLSEVLK 686



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 156/372 (41%), Gaps = 60/372 (16%)

Query: 223 LFCNFVREFGKKR------DLVSALRAYDASKK-HLSSPNMYICRTIIDVCGICGDYMKS 275
           L    + E G+K       D++  +R     +K  LSS     C   I      GD+ ++
Sbjct: 49  LVSRLIVEIGRKHKKMMVADVLRWMREESERRKIKLSSLPFNAC---IRALERMGDWREA 105

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKA 333
            AI   +    V  +I  +N++++   H  D++    + K M++  V  D+ S+N  L A
Sbjct: 106 VAILNIMEKDGVEPDIVSYNTVLSALRHSPDIQNVFVMLKRMRE-KVSPDIVSFNTALAA 164

Query: 334 C---CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           C   C   + V   E+  E +       ++ DVFT+ST++ +      +  A  +KE+M 
Sbjct: 165 CQRQCDWESGVAILEMMSEDQ-------IERDVFTFSTLISLCDRCGKYDEAFALKEEMD 217

Query: 391 SAGVTPNTITWSSLINACANA-----------GLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           +  V+PN  T+++LI  C N+             +  A  LF E   AG  P+    N L
Sbjct: 218 AKNVSPNIYTFNALIAVCKNSLATSLMSRKRQNTLTIAQILFAEAKAAGLRPDIVTYNSL 277

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
           L   +E  ++  ++ +              ED    TD I+          T    F   
Sbjct: 278 LGVYMEMGKWKESYDILFE----------IEDQHVITDVITYS--------TLISTFAKT 319

Query: 500 SHYS----SFDKRFSFK--PTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISW 551
             YS     ++K    +  P   TYN L+ AC    ++ +  A  ++M+  G+SPN +++
Sbjct: 320 RKYSLAIEMYEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTY 379

Query: 552 TILIDACGGSGN 563
           + +I +C    N
Sbjct: 380 STMIASCRSKDN 391



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 117/262 (44%), Gaps = 24/262 (9%)

Query: 191 LDEEFRIVQLCVN---KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247
           LD+ FRI+  C     KP+V              I+F   +      RDL  A R  +  
Sbjct: 462 LDDAFRILDECKRDGIKPNV--------------IMFTALIHACKVARDLDRAFRVLELM 507

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305
           K+   +PN+     ++  C + G+   +  +   L+      N+  FN+L+   V +H+ 
Sbjct: 508 KEDHVTPNLVTFNVLLGTCEVVGNSTCAFQVVGLLQEYGFRANLQTFNTLIKTCVRSHEW 567

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL---- 361
           +   EVY  MQ   +   ++++N L  A    G+   A ++  +++    K ++++    
Sbjct: 568 QKAFEVYSQMQLQRIRPSLSTFNALSMAAEEGGDWRRAIDVMVDMRIKTEKILIRMAGHT 627

Query: 362 -DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
             V  Y++++     +  +Q A  V + M ++GV  N +T++ +I+  +    + + + +
Sbjct: 628 PSVQAYNSLISACVKSSNYQKAFDVYKGMKTSGVRANIVTYNLIISILSGQRKLSEVLKV 687

Query: 421 FEEMLQAGCEPNSQCCNILLQA 442
             EM Q    P+S+   +++ A
Sbjct: 688 INEMKQEEVTPDSETIALMIDA 709


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 218 PRADILFCNFVREFGK-KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           P  D  +   +R  G+ KRD  + L  +D  ++   +P+      +ID+    G    + 
Sbjct: 116 PADDYTYAILIRSLGRCKRDEEATL-LFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAM 174

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKAC 334
            + + +  +N+  + Y  NSL+   +   +  L  E+++ M+K GV  +  S+N +L  C
Sbjct: 175 VVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCC 234

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
             AG   LA +   E   +EA+G+ K +  T++T++     AK+   A KV ++M SAG+
Sbjct: 235 GKAGKVGLAYQFMDE---MEARGI-KPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGL 290

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           TP+  T++ +I A A AG + +A  +F +M +AGC  N    N+L+ A V+A ++  A  
Sbjct: 291 TPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARD 350

Query: 455 LF 456
           ++
Sbjct: 351 IY 352



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 144/359 (40%), Gaps = 62/359 (17%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY----- 272
           R  +L  N  +  +G+   +   +  +    KH S PN Y  + +I      G+      
Sbjct: 11  RYHVLVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAME 70

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +  + I   L    +  N+ V + L   N  D     +++ +M+ +G  AD  +Y IL++
Sbjct: 71  LLDKMIKTGLEPDTLLCNV-VLDGLGKANMMD--EACKLFASMKSMGCPADDYTYAILIR 127

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           +         A  ++ E   +E +G        Y+ ++ ++  A   + A+ V + ML  
Sbjct: 128 SLGRCKRDEEATLLFDE---MEERGCTP-SAPAYTNVIDIYCKAGRIESAMVVLKKMLDK 183

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            + P+  T +SLI A +  G  E A  +FE M ++G   N+   N +L  C +A +   A
Sbjct: 184 NLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLA 243

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
           ++                        +  ME +                          K
Sbjct: 244 YQF-----------------------MDEMEAR------------------------GIK 256

Query: 513 PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           P + T+N L+       Y  +A  ++ EMR+ GL+P+  ++T +I+A   +GN+  A +
Sbjct: 257 PNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFE 315



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 114/240 (47%), Gaps = 9/240 (3%)

Query: 221 DILFCNFVRE-FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAI 278
           D L CN V +  GK   +  A + + AS K +  P + Y    +I   G C    ++  +
Sbjct: 83  DTLLCNVVLDGLGKANMMDEACKLF-ASMKSMGCPADDYTYAILIRSLGRCKRDEEATLL 141

Query: 279 YEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           ++++  +  T +   + +++++   A  ++  + V K M    +  D  + N L+ A   
Sbjct: 142 FDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSR 201

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G T LA EI+  +K    K  + ++  +++ ++     A    +A +  ++M + G+ P
Sbjct: 202 TGRTELACEIFERMK----KSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKP 257

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N+IT+++LIN    A    +A  + +EM  AG  P+      +++A  +A    +AF +F
Sbjct: 258 NSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMF 317



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/380 (21%), Positives = 156/380 (41%), Gaps = 52/380 (13%)

Query: 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS 252
           +EF+ +    +KP+   A  Y C++           +   K  ++V A+   D   K   
Sbjct: 35  DEFQELDKHGSKPN---AYTYKCVI-----------QSLVKAGNVVLAMELLDKMIKTGL 80

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTL 309
            P+  +C  ++D  G      ++  ++  ++S     + Y +  L+        D + TL
Sbjct: 81  EPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATL 140

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            ++  M++ G      +Y  ++   C AG    A  +   +K +  K  L  D +T +++
Sbjct: 141 -LFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVV---LKKMLDKN-LAPDDYTLNSL 195

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +   +     ++A ++ E M  +GV  NT++++++++ C  AG V  A    +EM   G 
Sbjct: 196 ITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGI 255

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSK---TQVALGEDY--DGNTDRISN 481
           +PNS   N L+     A     A+++    RS  L+    T   + E +   GN  +   
Sbjct: 256 KPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFE 315

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEM 539
           M   D +    + N V                   TYN+L+ A      Y   + +  +M
Sbjct: 316 M-FGDMEKAGCSANVV-------------------TYNLLIDALVKAGRYQDARDIYFDM 355

Query: 540 RTVGLSPNHISWTILIDACG 559
           +  G+ P+ I+ T+L    G
Sbjct: 356 KKKGILPDAITATVLQQLAG 375



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 110/266 (41%), Gaps = 46/266 (17%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           + GRI+  + VLKK+ +  +AP    D      L     R   +G  E+   + E +++ 
Sbjct: 166 KAGRIESAMVVLKKMLDKNLAP----DDYTLNSLITAVSR---TGRTELACEIFERMKKS 218

Query: 185 RLPVKELDEEFRIVQLCVNKP-DVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243
            + V  +   F  +  C  K   V LA ++                              
Sbjct: 219 GVAVNTV--SFNAMLDCCGKAGKVGLAYQF------------------------------ 246

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VN 301
            D  +     PN     T+I+  G      ++  + +++RS  +T +++ +  ++     
Sbjct: 247 MDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAK 306

Query: 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
           A ++    E++ +M+K G  A++ +YN+L+ A   AG    A++IY ++K    KG+L  
Sbjct: 307 AGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKK---KGILP- 362

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKE 387
           D  T + + ++    K   ++L   E
Sbjct: 363 DAITATVLQQLAGKCKLSGISLDENE 388


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 218 PRADILFCNFVREFGK-KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           P  D  +   +R  G+ KRD  + L  +D  ++   +P+      +ID+    G    + 
Sbjct: 116 PADDYTYAILIRSLGRCKRDEEATL-LFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAM 174

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKAC 334
            + + +  +N+  + Y  NSL+   +   +  L  E+++ M+K GV  +  S+N +L  C
Sbjct: 175 VVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCC 234

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
             AG   LA +   E   +EA+G+ K +  T++T++     AK+   A KV ++M SAG+
Sbjct: 235 GKAGKVGLAYQFMDE---MEARGI-KPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGL 290

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           TP+  T++ +I A A AG + +A  +F +M +AGC  N    N+L+ A V+A ++  A  
Sbjct: 291 TPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARD 350

Query: 455 LF 456
           ++
Sbjct: 351 IY 352



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/362 (19%), Positives = 148/362 (40%), Gaps = 61/362 (16%)

Query: 212 RYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271
           RY  +V  A       +  +G+   +   +  +    KH S PN Y  + +I      G+
Sbjct: 11  RYHVLVSNA------VIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGN 64

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNI 329
            + +    + +    +  +  ++N +++    A+ +    +++ +M+ +G  AD  +Y I
Sbjct: 65  VVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAI 124

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           L+++         A  ++ E   +E +G        Y+ ++ ++  A   + A+ V + M
Sbjct: 125 LIRSLGRCKRDEEATLLFDE---MEERGCTP-SAPAYTNVIDIYCKAGRIESAMVVLKKM 180

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
           L   + P+  T +SLI A +  G  E A  +FE M ++G   N+   N +L  C +A + 
Sbjct: 181 LDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKV 240

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
             A++                        +  ME +                        
Sbjct: 241 GLAYQF-----------------------MDEMEAR------------------------ 253

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             KP + T+N L+       Y  +A  ++ EMR+ GL+P+  ++T +I+A   +GN+  A
Sbjct: 254 GIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKA 313

Query: 568 LQ 569
            +
Sbjct: 314 FE 315



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 110/266 (41%), Gaps = 46/266 (17%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           + GRI+  + VLKK+ +  +AP    D      L     R   +G  E+   + E +++ 
Sbjct: 166 KAGRIESAMVVLKKMLDKNLAP----DDYTLNSLITAVSR---TGRTELACEIFERMKKS 218

Query: 185 RLPVKELDEEFRIVQLCVNKP-DVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243
            + V  +   F  +  C  K   V LA ++                              
Sbjct: 219 GVAVNTV--SFNAMLDCCGKAGKVGLAYQF------------------------------ 246

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VN 301
            D  +     PN     T+I+  G      ++  + +++RS  +T +++ +  ++     
Sbjct: 247 MDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAK 306

Query: 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
           A ++    E++ +M+K G  A++ +YN+L+ A   AG    A++IY ++K    KG+L  
Sbjct: 307 AGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKK---KGILP- 362

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKE 387
           D  T + + ++    K   ++L   E
Sbjct: 363 DAITATVLQQLAGKCKLSGISLDENE 388


>gi|299469655|emb|CBN76509.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 787

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 142/325 (43%), Gaps = 27/325 (8%)

Query: 254 PNMYICRTIID---VCGICGDYMKSRAIYEDLRS--QNVTLN--IYVFNSLMNVNAHDLK 306
           P + +  T++        CG   + +   E LR   Q   +N     +N+ M      L+
Sbjct: 451 PTVGVTPTVVSYSHAIAACGQSYQWKPALELLREMPQEAGINPDAVCYNNCMTALGRGLQ 510

Query: 307 F--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           +   L + + M  +G+     SY + +KAC  AG    A  +   ++ ++A+  +  +V 
Sbjct: 511 WEMALTLLREMPSVGLPIKAQSYTVAIKACGDAGEGKPAVAL---LREMQAELSVPPNVI 567

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+  +        W+ AL++  +M S GV+PN  T+++ I AC N+G  E+A+ L  EM
Sbjct: 568 SYTAAIAACGKGDQWKQALELLREMASMGVSPNDRTYTAAITACGNSGKWEEALSLLREM 627

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
              G +PN       ++AC    Q++RA  LFR    S    A  + Y+       N   
Sbjct: 628 PTMGADPNIASYTATIKACGNGGQWERAVELFRE-LPSAGITADVQAYNACVQACGNSGA 686

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC-CTD---YYRVKALMNEMR 540
            D Q++       P +           +P   TYN  + AC C D   + +   L+ EM 
Sbjct: 687 VD-QAVELLREMAPAA---------GLEPNVFTYNAALMACSCPDGGRWGKALELLEEMA 736

Query: 541 TVGLSPNHISWTILIDACGGSGNVE 565
             G++PN ++    + ACG  G  E
Sbjct: 737 WRGIAPNAVTHESALAACGERGRDE 761



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 134/320 (41%), Gaps = 20/320 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV-FNSLMNVNAHDL-KFTLEV 311
           PN+    T I  CG  G    +  + E++ +  V  N      ++      D  +  + V
Sbjct: 317 PNVICYNTAIAACGTGGQSEVAVDLLEEMNALGVRPNTQTCLAAVRAAGDRDRGEQAVSV 376

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            ++M + GV A+   Y + +KAC        A E+   ++ +E  GV  + V  Y   + 
Sbjct: 377 LRSMSEAGVAAEAKCYAVTIKACGRGRRWARALEL---LREMEKNGVEPI-VMGYDACIA 432

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-AGCE 430
              D K W+ A+ +  +M + GVTP  +++S  I AC  +   + A+ L  EM Q AG  
Sbjct: 433 ACGDGKQWEQAVALLREMPTVGVTPTVVSYSHAIAACGQSYQWKPALELLREMPQEAGIN 492

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P++ C N  + A     Q++ A  L R         ++G      +  ++     D    
Sbjct: 493 PDAVCYNNCMTALGRGLQWEMALTLLRE------MPSVGLPIKAQSYTVAIKACGDAGE- 545

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNH 548
              P     +         S  P   +Y   + AC     + +   L+ EM ++G+SPN 
Sbjct: 546 -GKPAV---ALLREMQAELSVPPNVISYTAAIAACGKGDQWKQALELLREMASMGVSPND 601

Query: 549 ISWTILIDACGGSGNVEGAL 568
            ++T  I ACG SG  E AL
Sbjct: 602 RTYTAAITACGNSGKWEEAL 621



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/376 (21%), Positives = 158/376 (42%), Gaps = 38/376 (10%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY---ICRTIIDVCGICGDYMKSRAIYE 280
           F   +++ G +RD   A R     ++ L  P +    +C  +++     G +     +  
Sbjct: 182 FMRRLQQAGMRRDCDEAERVL---RQALECPGVVDTVMCNAVLNTFAADGRWQVVLEVMR 238

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +R   +T +   + + +       + + ++ + K M   GV  +   Y   + AC ++G
Sbjct: 239 QMREAGLTPDALTYTNAIKACGKGREWRRSVALLKEMSAHGVELNSIHYVCAMTACKISG 298

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
              +  E  G ++ ++A G+ + +V  Y+T +         ++A+ + E+M + GV PNT
Sbjct: 299 ---MGAEAVGLLREMQAAGI-EPNVICYNTAIAACGTGGQSEVAVDLLEEMNALGVRPNT 354

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            T  + + A  +    EQA+ +   M +AG    ++C  + ++AC    ++ RA  L R 
Sbjct: 355 QTCLAAVRAAGDRDRGEQAVSVLRSMSEAGVAAEAKCYAVTIKACGRGRRWARALELLRE 414

Query: 459 WTLSKTQ-VALGEDY------DGNTDRISNMEHKDKQSITNTPNFVPNSH-YSSFDKRFS 510
              +  + + +G D       DG     +    ++  ++  TP  V  SH  ++  + + 
Sbjct: 415 MEKNGVEPIVMGYDACIAACGDGKQWEQAVALLREMPTVGVTPTVVSYSHAIAACGQSYQ 474

Query: 511 FKPT----------------TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWT 552
           +KP                    YN  M A      +     L+ EM +VGL     S+T
Sbjct: 475 WKPALELLREMPQEAGINPDAVCYNNCMTALGRGLQWEMALTLLREMPSVGLPIKAQSYT 534

Query: 553 ILIDACGGSGNVEGAL 568
           + I ACG +G  + A+
Sbjct: 535 VAIKACGDAGEGKPAV 550


>gi|167998294|ref|XP_001751853.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696951|gb|EDQ83288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 657

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 112/466 (24%), Positives = 186/466 (39%), Gaps = 76/466 (16%)

Query: 115 MVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMF 174
           MVA G     R G  D  V + +++ ELG+AP    D   F+ L +           + F
Sbjct: 250 MVACG-----RCGAGDTAVELFEEMKELGLAP----DNITFRGLVSATTAAGKWKAAQSF 300

Query: 175 VGLMEVLEEFRLPVKELDE-EFRIVQLCVNKPDVNL---AIRYACIVPRAD---ILFCNF 227
           + LM+    F   + E  E ++   +   ++  + L    I   C  PR +    L C  
Sbjct: 301 INLMQA-GGFSFAIGEFTEMQWACARARNSRESLGLLQAMIEQGC-EPRLENYNALLC-- 356

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
              + K  +   A+R     ++   +P+     +++  C   G   K+ A+ E ++  N 
Sbjct: 357 --AYEKTANWEEAVRTVVWIQEKGFTPDFITWSSLLGACANAGQAEKAVAVMEKMKENNF 414

Query: 288 TLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
           T N+  +  L+       + + T E++ +M   G   +  ++N LL A          + 
Sbjct: 415 TPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNSGCPPNEVAWNSLLSA--YEKGRQWKRV 472

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +Y  ++  E  GV KLDV  +ST +   A A  WQ+A K    M  +G  PN +T+SSLI
Sbjct: 473 LY-TIEKQEELGV-KLDVVAWSTTISALAKAGQWQLAEKKIRQMKQSGCQPNIVTYSSLI 530

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
            A  + GL  +A  +F+ ML  G  P+S+ C  LL+A  +  Q D+    F S       
Sbjct: 531 KAYGDVGLWNKAESVFKSMLLEGIRPDSKACCALLRAYAKGRQLDKVMFFFDS------- 583

Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525
                                          +P         R+  KP    Y  +  AC
Sbjct: 584 ------------------------------MMP---------RYGIKPDKYAYAAIFWAC 604

Query: 526 --CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             C ++ R    M  M   G +P+ + +T LI      G V+ A++
Sbjct: 605 WTCGEWQRAADYMENMEAAGCTPDTMIYTTLITMYEAHGQVDKAME 650



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 123/276 (44%), Gaps = 38/276 (13%)

Query: 219 RADILFCNFV-REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R D+   N V  + G+ R+  +A R + A +     PN ++C T+I V G      ++  
Sbjct: 170 RVDVRSMNVVVWQLGQMRNWDAASRVFRAFRSASVEPNAHVCTTLIAVLGYGRRLPEALK 229

Query: 278 IYEDLRSQNVTLNIYVFNSLM----NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           ++  +  Q +   IY FN+LM       A D    +E+++ M++LG+  D  ++  L+ A
Sbjct: 230 LFRWMEKQGIERPIYTFNALMVACGRCGAGDT--AVELFEEMKELGLAPDNITFRGLVSA 287

Query: 334 CCLAGNTVLAQEI------------YGEVKHL-----------EAKGVLKLDV------- 363
              AG    AQ               GE   +           E+ G+L+  +       
Sbjct: 288 TTAAGKWKAAQSFINLMQAGGFSFAIGEFTEMQWACARARNSRESLGLLQAMIEQGCEPR 347

Query: 364 -FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
              Y+ ++  +     W+ A++    +   G TP+ ITWSSL+ ACANAG  E+A+ + E
Sbjct: 348 LENYNALLCAYEKTANWEEAVRTVVWIQEKGFTPDFITWSSLLGACANAGQAEKAVAVME 407

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +M +    PN      LL+A  +   +++   +F S
Sbjct: 408 KMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHS 443



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 114/293 (38%), Gaps = 29/293 (9%)

Query: 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
           + V + DL    ++   + + G+  D+ S N+++       N   A  ++   +      
Sbjct: 147 VRVASEDLGSDEDIMGVVHETGLRVDVRSMNVVVWQLGQMRNWDAASRVFRAFRS----A 202

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            ++ +    +T++ V    +    ALK+   M   G+     T+++L+ AC   G  + A
Sbjct: 203 SVEPNAHVCTTLIAVLGYGRRLPEALKLFRWMEKQGIERPIYTFNALMVACGRCGAGDTA 262

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE--DYDGN 475
           + LFEEM + G  P++     L+ A   A ++  A              A+GE  +    
Sbjct: 263 VELFEEMKELGLAPDNITFRGLVSATTAAGKWKAAQSFINLMQAGGFSFAIGEFTEMQWA 322

Query: 476 TDRISN-----------MEHKDKQSITN----------TPNFVPNSHYSSFDKRFSFKPT 514
             R  N           +E   +  + N          T N+        + +   F P 
Sbjct: 323 CARARNSRESLGLLQAMIEQGCEPRLENYNALLCAYEKTANWEEAVRTVVWIQEKGFTPD 382

Query: 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
             T++ L+ AC       +  A+M +M+    +PN +SW  L+ A   +GN E
Sbjct: 383 FITWSSLLGACANAGQAEKAVAVMEKMKENNFTPNVVSWCYLLKAYQKTGNWE 435



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 7/210 (3%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P  ++ + + +  + K R     L   +  ++     ++    T I      G +  +  
Sbjct: 450 PPNEVAWNSLLSAYEKGRQWKRVLYTIEKQEELGVKLDVVAWSTTISALAKAGQWQLAEK 509

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF---TLEVYKNMQKLGVMADMASYNILLKAC 334
               ++      NI  ++SL+     D+        V+K+M   G+  D  +   LL+A 
Sbjct: 510 KIRQMKQSGCQPNIVTYSSLIKAYG-DVGLWNKAESVFKSMLLEGIRPDSKACCALLRA- 567

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
             A    L + ++     +   G+ K D + Y+ I         WQ A    E+M +AG 
Sbjct: 568 -YAKGRQLDKVMFFFDSMMPRYGI-KPDKYAYAAIFWACWTCGEWQRAADYMENMEAAGC 625

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TP+T+ +++LI      G V++AM + ++M
Sbjct: 626 TPDTMIYTTLITMYEAHGQVDKAMEILKKM 655


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 151/352 (42%), Gaps = 55/352 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           L  + +  F K  D   A+R    ++ +  +P       +I   G  G   ++ A++E++
Sbjct: 259 LMNDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEI 318

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           R          +N+L+   V    LK    V   M+K GV  D  +Y++L+ A   AG  
Sbjct: 319 RENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRW 378

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A+ +   +K +EA  V + + + YS I+  + D   WQ + +V +DM S GV P+   
Sbjct: 379 ESARIV---LKEMEASNV-EPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHF 434

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++ +I+       ++ AM  FE ML  G  P++   N L+    ++ + + A  LF    
Sbjct: 435 YNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELF---- 490

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
                   GE           M+ +                         + P  TTYNI
Sbjct: 491 --------GE-----------MQQR------------------------GYSPCITTYNI 507

Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           ++ +      + +V   +++M++ GL PN I++T L+D  G SG    A++C
Sbjct: 508 MINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIEC 559



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 134/340 (39%), Gaps = 84/340 (24%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           PN Y+   I+      G++ KS  + +D++S  V  + + +N +++       L   +  
Sbjct: 395 PNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMAT 454

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH------------------- 352
           ++ M   G+  D  ++N L+   C +G   +A+E++GE++                    
Sbjct: 455 FERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGE 514

Query: 353 -------------LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
                        ++++G+L  +  TY+T+V V+  +  +  A++  E + S G  P + 
Sbjct: 515 QQRWEQVSLFLSKMQSQGLLP-NSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTST 573

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +++LINA A  GL E A++ F  M   G  P+    N L+ A  E  +   AF + +  
Sbjct: 574 MYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQ-- 631

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                                        + K  + +P   TY 
Sbjct: 632 ---------------------------------------------YMKENNIEPDVVTYT 646

Query: 520 ILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
            LMKA      + +V A+  EM T G +P+  +  +L  A
Sbjct: 647 TLMKALIRVEKFQKVPAVYEEMVTSGCTPDRKARAMLRSA 686


>gi|299471552|emb|CBN80038.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 152/363 (41%), Gaps = 49/363 (13%)

Query: 236 DLVSALRAYDASKK------HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           D   ALRA D  K+      H  S  M     +I  CG  G + ++  +  ++ +  ++ 
Sbjct: 9   DRRKALRALDGMKRLPRELLHQKSHCM-----VITACGRGGQWEQAVKLLREMPTAGLSP 63

Query: 290 NIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  +N++    A     K  L + K M  +G+  D+ +Y+  + AC        A  + 
Sbjct: 64  NVITYNAVFAACAKGEQWKGALALLKEMTAVGLTPDVITYSSAVDACAKGEQWKGALAL- 122

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI-------- 399
             +K + A G L  DV TYS+ V   A  + W+ AL + ++M + G+TPN I        
Sbjct: 123 --LKEMTAVG-LTPDVITYSSAVDACAKGEQWKEALALLKEMTAVGLTPNVISYNGLPSM 179

Query: 400 ----TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
               T++S I+ C+  G  ++ + L +EM   G  PN    N  + AC +  Q+  A  L
Sbjct: 180 SPWCTYNSAIDGCSKGGQWKETLALLKEMAAVGLTPNVITYNSAIDACSKGGQWKEALAL 239

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF---- 511
            +      T V L        D IS     D  S   T    P +    +    +     
Sbjct: 240 LKE----MTAVGL------TPDVISYSSAIDACSKGATAQLFPCAKGEQWKGALALLKEM 289

Query: 512 -----KPTTTTYNILMKACCTDYYRVK-ALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
                 P   +Y+  +     D ++V  AL+ +M  VGL+P+ I+    IDAC   G  E
Sbjct: 290 TVVGLTPNVVSYSAAIACAKGDQWKVALALLKKMTAVGLTPDVITCNSAIDACSKGGQWE 349

Query: 566 GAL 568
            AL
Sbjct: 350 TAL 352



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 142/341 (41%), Gaps = 52/341 (15%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLE 310
           SPN+     +   C     +  + A+ +++ +  +T ++  ++S ++  A     K  L 
Sbjct: 62  SPNVITYNAVFAACAKGEQWKGALALLKEMTAVGLTPDVITYSSAVDACAKGEQWKGALA 121

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF------ 364
           + K M  +G+  D+ +Y+  + AC         +E    +K + A G L  +V       
Sbjct: 122 LLKEMTAVGLTPDVITYSSAVDACAKGEQW---KEALALLKEMTAVG-LTPNVISYNGLP 177

Query: 365 ------TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
                 TY++ +   +    W+  L + ++M + G+TPN IT++S I+AC+  G  ++A+
Sbjct: 178 SMSPWCTYNSAIDGCSKGGQWKETLALLKEMAAVGLTPNVITYNSAIDACSKGGQWKEAL 237

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478
            L +EM   G  P+     I   + ++AC      +LF          A GE + G    
Sbjct: 238 ALLKEMTAVGLTPDV----ISYSSAIDACSKGATAQLF--------PCAKGEQWKGALAL 285

Query: 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK---------------PTTTTYNILMK 523
           +  M       +  TPN V  S   +  K   +K               P   T N  + 
Sbjct: 286 LKEM-----TVVGLTPNVVSYSAAIACAKGDQWKVALALLKKMTAVGLTPDVITCNSAID 340

Query: 524 ACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
           AC     +    AL+ EM  VGL+P+ + +   IDAC   G
Sbjct: 341 ACSKGGQWETALALLKEMAAVGLTPSVVGYNSAIDACARGG 381



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 99/205 (48%), Gaps = 18/205 (8%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV------------ 300
           +PN+    + ID C   G + ++ A+ +++ +  +T ++  ++S ++             
Sbjct: 214 TPNVITYNSAIDACSKGGQWKEALALLKEMTAVGLTPDVISYSSAIDACSKGATAQLFPC 273

Query: 301 -NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
                 K  L + K M  +G+  ++ SY+  + AC       +A  +   +K + A G L
Sbjct: 274 AKGEQWKGALALLKEMTVVGLTPNVVSYSAAI-ACAKGDQWKVALAL---LKKMTAVG-L 328

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             DV T ++ +   +    W+ AL + ++M + G+TP+ + ++S I+ACA  G  ++ + 
Sbjct: 329 TPDVITCNSAIDACSKGGQWETALALLKEMAAVGLTPSVVGYNSAIDACARGGRWKEGVD 388

Query: 420 LFEEMLQAGCEPNSQCCNILLQACV 444
           L EEM + G  P+    + L+  CV
Sbjct: 389 LLEEMRELGVVPDVITYHALMVTCV 413



 Score = 45.4 bits (106), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 15/182 (8%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR-AIYEDLRSQNVTL 289
            G   D++S   A DA  K  ++  ++ C          G+  K   A+ +++    +T 
Sbjct: 246 VGLTPDVISYSSAIDACSKG-ATAQLFPCAK--------GEQWKGALALLKEMTVVGLTP 296

Query: 290 NIYVFNSLMNVNAHD-LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           N+  +++ +     D  K  L + K M  +G+  D+ + N  + AC   G    A  +  
Sbjct: 297 NVVSYSAAIACAKGDQWKVALALLKKMTAVGLTPDVITCNSAIDACSKGGQWETALAL-- 354

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            +K + A G L   V  Y++ +   A    W+  + + E+M   GV P+ IT+ +L+  C
Sbjct: 355 -LKEMAAVG-LTPSVVGYNSAIDACARGGRWKEGVDLLEEMRELGVVPDVITYHALMVTC 412

Query: 409 AN 410
            N
Sbjct: 413 VN 414


>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 157/373 (42%), Gaps = 57/373 (15%)

Query: 201 CVNKPDVNLAIRYACIVPR-ADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYI 258
           C+++  + LA   A   P+   +  CN F+R  G    +   + AY+A       P +  
Sbjct: 72  CMSRRRLKLAAATAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVT 131

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
             T+I   G C     +   + ++    +T ++   NSL+N    A      L+V+  M 
Sbjct: 132 FSTLISRAGACRRVRLAERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMS 191

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           + GV   + ++N L+ AC  AG+   A++++  +    ++  L  +  T+S ++   A  
Sbjct: 192 RYGVTPSVITFNTLIDACGRAGDIDRARQVFSRL----SQAGLSPNDRTFSALIHSHAVQ 247

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A    ++M + G+ PN +T+S+LINAC  AG + +A    +EM   G EPN    
Sbjct: 248 GQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTW 307

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
             L+ AC +  + + +F+LF+                         E +++ ++   PN 
Sbjct: 308 TTLIDACGKGKELEWSFKLFK-------------------------EMRERGTV---PNG 339

Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTIL 554
           V                   T + LM AC    +     A++  M  VG+ P  +++T L
Sbjct: 340 V-------------------TCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYTSL 380

Query: 555 IDACGGSGNVEGA 567
           +  C   G  + A
Sbjct: 381 LTQCARLGQADRA 393



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 80/224 (35%), Gaps = 51/224 (22%)

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G     +   GE      +G  +++    S ++++F  A     A KV E M+    +P+
Sbjct: 517 GGATTGEGGSGETATARGRGAWRMNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPD 576

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQA--GCEPNSQCCNILLQACVEACQFDRAFRL 455
             TW  L+NA   AG +++A+ L E       G E N    + LL AC  A +  RAFR+
Sbjct: 577 GETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRI 636

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
            +S                                                +    KPT 
Sbjct: 637 VQSM-----------------------------------------------RETGVKPTE 649

Query: 516 TTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
            TY  LM+ C    D      +   M T G+ P   S+T L+ A
Sbjct: 650 GTYLALMEVCRHSRDSKAAVEVFEAMETEGVRPGVRSYTSLLKA 693



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 107/228 (46%), Gaps = 21/228 (9%)

Query: 278  IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNM----QKLGVMADMASYNILL 331
            +++++RS+ V  ++  +N+L+N  A   +F   L V + M    +  G+  D  +Y  L+
Sbjct: 881  VFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLI 940

Query: 332  KACCLAGNTVL--AQEIYGEVK----HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
            KA   A    +  A+EI+  ++    H       +    TY+ +++    A+ +  AL++
Sbjct: 941  KAAARAVPPRVEEAEEIFATMQQRTNHFST--FARPTEVTYAHLMRASVMAEDYGRALEI 998

Query: 386  KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
                LSAGV P   +  + + AC  AG V+ A+ +++ M + G  PNS+    L+  C  
Sbjct: 999  WRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLVNLCRA 1058

Query: 446  ACQFDRAFRLFRSWTLS-------KTQVALGEDYDGNTDRISNMEHKD 486
                  A R+ R  + +       ++ V++  +  G+T R  N   ++
Sbjct: 1059 NGLQSVAARIMRERSKTDATTNRRRSNVSMRRNSAGSTSRKRNKSTRN 1106



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 14/158 (8%)

Query: 420  LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
            +F+EM   G  P+ +  N L+  C +  +FDRA  + R          L  D    T  I
Sbjct: 881  VFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLI 940

Query: 480  SNMEH------KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYR 531
                       ++ + I  T     N H+S+F      +PT  TY  LM+A     DY R
Sbjct: 941  KAAARAVPPRVEEAEEIFATMQQRTN-HFSTF-----ARPTEVTYAHLMRASVMAEDYGR 994

Query: 532  VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               +  +  + G++P   S    + ACGG+G+V+ ALQ
Sbjct: 995  ALEIWRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQ 1032


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 143/355 (40%), Gaps = 65/355 (18%)

Query: 222 ILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           I++ + +R F   G+K D     + Y    +    P++ +  T +D     G+  K RAI
Sbjct: 491 IIYTSLIRNFFMHGRKED---GHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAI 547

Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           +ED++S     ++  ++ L++    A   + T  +++ M + G   D  +YN ++   C 
Sbjct: 548 FEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCK 607

Query: 337 AGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           +G    A E+  E  VKH+         V TY +IV   A       A  + E+  S G+
Sbjct: 608 SGKVDKAYEVLEEMKVKHVHPT------VATYGSIVDGLAKIDRLDEAYMLFEEAKSKGI 661

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N I +SSLI+     G +++A  + EEM++ G  PN    N L+ A V+  + D A  
Sbjct: 662 ELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALI 721

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
            F+S                                                K     P 
Sbjct: 722 CFQSM-----------------------------------------------KEMKCSPN 734

Query: 515 TTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           T TY+IL+   C    Y +      EM+  GL PN +++T +I      GN+  A
Sbjct: 735 TYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDA 789



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 105/221 (47%), Gaps = 6/221 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           + + V    K   L  A   ++ +K      N+ +  ++ID  G  G   ++  I E++ 
Sbjct: 633 YGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMM 692

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            + +T N+Y +NSLM+  V   ++   L  +++M+++    +  +Y+IL+   C      
Sbjct: 693 KKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYN 752

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A   + E   ++ +G++  +V TY+T++   A       A  + E   + G  P++ ++
Sbjct: 753 KAFVFWQE---MQKQGLIP-NVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASF 808

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           ++LI   +NA    +A  +FEE    GC  N + C  LL A
Sbjct: 809 NALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLDA 849



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 158/367 (43%), Gaps = 42/367 (11%)

Query: 211 IRYACIVPRADILFCNFVRE-FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269
           ++ +C+ P  DI+  N   + FGK   +  A + +   K H   P+     +++ V    
Sbjct: 237 VKGSCLEP--DIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKA 294

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL---GVMADMAS 326
           G   ++  ++  + ++      Y +N+++       +F  + YK +++L   G +  + S
Sbjct: 295 GRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFD-DAYKLLERLRERGCIPSVVS 353

Query: 327 YNILLKACCLAGNTVLAQEI-YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +N +L   CL     + + +   +V   +AK     ++ TY+ I+ +   A     A K+
Sbjct: 354 FNSIL--TCLGKKRKVDEALTLFDVMKKDAKP----NISTYNIIIDMLCMAGRVNEAYKI 407

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
           +++M  AG+ PN ++ + +++    A  +E+A  +FE   + GC PNS     L+    +
Sbjct: 408 RDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGK 467

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGN----TDRISN-MEHKDKQSITNTPNFVPNS 500
             + D A+RLF           L   +D N    T  I N   H  K+          + 
Sbjct: 468 KGKIDDAYRLFEKM--------LDAGHDANPIIYTSLIRNFFMHGRKE----------DG 509

Query: 501 H--YSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILID 556
           H  Y    +R   +P  T  N  M       +  + +A+  +M++ G  P+  S++ILI 
Sbjct: 510 HKIYKEMIRR-GGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIH 568

Query: 557 ACGGSGN 563
               +G 
Sbjct: 569 GLTKAGQ 575



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 100/217 (46%), Gaps = 11/217 (5%)

Query: 249 KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHD 304
           KH+  P +    +I+D         ++  ++E+ +S+ + LN+ +++SL++    V   D
Sbjct: 624 KHVH-PTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRID 682

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
             +   + + M K G+  ++ ++N L+ A         A   +  +K ++       + +
Sbjct: 683 EAYL--ILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSP----NTY 736

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TYS ++      + +  A    ++M   G+ PN +T++++I+  A  G +  A  LFE  
Sbjct: 737 TYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERF 796

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
              G  P+S   N L++    A +   A+++F    L
Sbjct: 797 KTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRL 833



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/384 (19%), Positives = 147/384 (38%), Gaps = 66/384 (17%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG---------DYMKSRAIYED 281
            GKKR +  AL  +D  KK  + PN+     IID+  + G         D M+   ++ +
Sbjct: 361 LGKKRKVDEALTLFDVMKKD-AKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPN 419

Query: 282 LRSQNVTLN-------------IYVFNSLMNVNAHDLKF---------------TLEVYK 313
           L S N+ ++             I+   S    N + + +                  +++
Sbjct: 420 LLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFE 479

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
            M   G  A+   Y  L++   + G      +IY E+     +  L L     +T +   
Sbjct: 480 KMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTL----LNTYMDCV 535

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
             A   +    + EDM S G  P+  ++S LI+    AG   +  ++F+ M Q G   ++
Sbjct: 536 FKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDA 595

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
           +  N ++    ++ + D+A+ +     +      +   Y    D ++ ++  D+      
Sbjct: 596 RAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVAT-YGSIVDGLAKIDRLDEA----- 649

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY-------RVKALMNEMRTVGLSP 546
                   Y  F++    K      N+++ +   D +           ++ EM   GL+P
Sbjct: 650 --------YMLFEEA---KSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTP 698

Query: 547 NHISWTILIDACGGSGNVEGALQC 570
           N  +W  L+DA   +  ++ AL C
Sbjct: 699 NVYTWNSLMDALVKTEEIDEALIC 722


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 151/354 (42%), Gaps = 59/354 (16%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           +   +  +  + ++  A R  DA +     P+ Y   ++I   G+C  G   ++  +++ 
Sbjct: 211 YNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLI--SGMCKEGRLEEASGLFDK 268

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    +  N   +N+L++   N  DL+        M K G+M  +++YN+L+ A  + G 
Sbjct: 269 MVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGR 328

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++   +K +  KG++  D  TY+ ++  ++     + A  +  +MLS G+ P  +
Sbjct: 329 MGEADDM---IKEMRKKGIIP-DAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHV 384

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++SLI   +    +++A  LFE++L  G  P+    N ++         +RAF L +  
Sbjct: 385 TYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEM 444

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                     D++S+                      P   T+N
Sbjct: 445 --------------------------DRKSVP---------------------PDEVTFN 457

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            LM+  C +      + L++EM+  G+ P+HIS+  LI   G  G+++ A   R
Sbjct: 458 TLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVR 511



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 102/253 (40%), Gaps = 53/253 (20%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           LK   E    M+ LG   ++ SYN ++      GN   A+ I   +  +  KG+ + D +
Sbjct: 189 LKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRI---LDAMRVKGI-EPDSY 244

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY +++         + A  + + M+  G+ PN +T+++LI+   N G +E+A    +EM
Sbjct: 245 TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEM 304

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           ++ G  P+    N+L+ A            LF    + +             D I  M  
Sbjct: 305 VKKGIMPSVSTYNLLVHA------------LFMEGRMGEAD-----------DMIKEMRK 341

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTV 542
           K                           P   TYNIL+     C +  R   L NEM + 
Sbjct: 342 K------------------------GIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSK 377

Query: 543 GLSPNHISWTILI 555
           G+ P H+++T LI
Sbjct: 378 GIEPTHVTYTSLI 390



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 145/323 (44%), Gaps = 35/323 (10%)

Query: 125 REGRIDCVVGVLKKLNELGVAP-----LELFDGSGFKLLKNECQRLLDSGEVEMFVGLME 179
           +EGR++   G+  K+ E+G+ P       L DG      K + +R     +  +  G+M 
Sbjct: 255 KEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGY---CNKGDLERAFSYRDEMVKKGIMP 311

Query: 180 VLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---DILFCNFVREFGKKRD 236
            +  + L V  L  E R+ +      D+   +R   I+P A   +IL   + R       
Sbjct: 312 SVSTYNLLVHALFMEGRMGE----ADDMIKEMRKKGIIPDAITYNILINGYSR------- 360

Query: 237 LVSALRAYDASKKHLS---SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
             +A RA+D   + LS    P      ++I V        ++  ++E +  Q V+ ++ +
Sbjct: 361 CGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIM 420

Query: 294 FNSLMNVNAH----DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
           FN++  ++ H    +++    + K M +  V  D  ++N L++  C  G    A+ +  E
Sbjct: 421 FNAM--IDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDE 478

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +K    +G+ K D  +Y+T++  +      + A  V+++MLS G  P  +T+++LI    
Sbjct: 479 MK---XRGI-KPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLC 534

Query: 410 NAGLVEQAMHLFEEMLQAGCEPN 432
                + A  L +EM+  G  P+
Sbjct: 535 KNQEGDLAEELLKEMVNKGISPD 557


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 161/356 (45%), Gaps = 37/356 (10%)

Query: 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDL 282
           CN   EFGK  DL  +++     ++    P+ +   T+I   G+C  G+   +R +  ++
Sbjct: 56  CN-AGEFGKALDLFQSMK-----REKRVEPDRWTYNTLIS--GLCSSGNTEGARKLLSEM 107

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           R +N+  N++ ++S++   V     + + +V + M   G   D+ ++N +++    + N 
Sbjct: 108 RDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNM 167

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML--SAGVTPNT 398
             A+E+Y   +H+   G  K D  +Y  ++   A       +LK+  +M   +AG  PN 
Sbjct: 168 EKAREVY---QHMVESG-YKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNV 223

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           IT+S+LI+     G +E+A+ +F  ML+AGC+PN      L+     A +  +A  LF  
Sbjct: 224 ITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEK 283

Query: 459 WT---LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
            T   +    VA      G   R  +M+  +K              Y         +PT 
Sbjct: 284 MTQACIPPDAVAYNSLIAGYCKR-GSMDEAEK-------------LYREMSGGAGLQPTI 329

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            T+N L+   C      R   L+ EM T GL+ +  ++ ILI     +  ++ AL+
Sbjct: 330 VTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALE 385



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 115/283 (40%), Gaps = 58/283 (20%)

Query: 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +V  SL    A  L   LEV++ M+    +  + +YN+L+ + C AG    A +++  +K
Sbjct: 15  FVVQSL--AKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMK 72

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
               +  ++ D +TY+T++     +   + A K+  +M    +  N  T+SS+I +    
Sbjct: 73  R---EKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKE 129

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
              E++  + EEM+ AGC P+    N ++Q    +   ++A  +++    S         
Sbjct: 130 AKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVES--------- 180

Query: 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---- 527
                                                  +KP   +Y+IL+         
Sbjct: 181 --------------------------------------GYKPDNVSYHILIHGLAKIGKL 202

Query: 528 -DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +  ++ + M  MR  G  PN I+++ LI     +G +E AL+
Sbjct: 203 DESLKILSEM-AMRAAGYVPNVITFSTLIHGLCRTGELEKALE 244



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 117/274 (42%), Gaps = 20/274 (7%)

Query: 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247
           + +LDE  +I+          +A+R A  VP   I F   +    +  +L  AL  + + 
Sbjct: 199 IGKLDESLKILS--------EMAMRAAGYVPNV-ITFSTLIHGLCRTGELEKALEVFGSM 249

Query: 248 KKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAH 303
            +    PN Y   T+I   G+C     +++R ++E +    +  +   +NSL+       
Sbjct: 250 LEAGCKPNKYTYTTLI--AGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRG 307

Query: 304 DLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
            +    ++Y+ M    G+   + ++N L+   C  G    A E+   V  +  KG L  D
Sbjct: 308 SMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANEL---VAEMGTKG-LAAD 363

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
             TY  ++   + A     AL+V + M       + ++  S +      G ++QA  +FE
Sbjct: 364 TCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFE 423

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
              ++G  PN +   IL ++ ++  + + A +L 
Sbjct: 424 ATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 457


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 152/354 (42%), Gaps = 62/354 (17%)

Query: 218 PRADILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           P A +++ + +R F   G+K D     + Y        SP++ +    +D     G+  K
Sbjct: 514 PNA-VVYTSLIRNFFKCGRKED---GHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEK 569

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
            RA++E++++Q +T ++  ++ L++  V     K T +++  M++ G+  D  +YNI++ 
Sbjct: 570 GRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVID 629

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C +G    A ++  E+K    KG L+  V TY +++   A       A  + E+  S 
Sbjct: 630 GFCKSGKVNKAYQLLEEMK---TKG-LQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 685

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            V  N + +SSLI+     G +++A  + EE++Q G  PN+   N LL A V+A + D A
Sbjct: 686 AVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEA 745

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
              F+                       NM                        K     
Sbjct: 746 LVCFQ-----------------------NM------------------------KNLKCP 758

Query: 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           P   TY+I++   C    + +      EM+  GL PN I++T +I      GNV
Sbjct: 759 PNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNV 812



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 107/233 (45%), Gaps = 6/233 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + + + +    K   L  A   ++ +K      N+ +  ++ID  G  G   ++  I E+
Sbjct: 657 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEE 716

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           L  + +T N Y +N L++  V A ++   L  ++NM+ L    +  +Y+I++   C    
Sbjct: 717 LMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRK 776

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A   + E++    K  LK +  TY+T++   A       A  + E   S+G  P++ 
Sbjct: 777 FNKAFVFWQEMQ----KQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSA 832

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            ++++I   +NA     A  LFEE    GC   S+ C +LL A  +A   ++A
Sbjct: 833 CYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHKADCLEQA 885



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 131/309 (42%), Gaps = 23/309 (7%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P++     I+   G  G   ++  I E ++  +   N+  +N L+++   A +L+  L+V
Sbjct: 375 PSVIAYNCILTCLGRKGKVEEALRILEAMK-MDAAPNLTSYNILIDMLCKAGELEAALKV 433

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
             +M++ G+  ++ + NI++   C A     A  I+  + H     V   D  T+ +++ 
Sbjct: 434 QDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDH----KVCTPDSVTFCSLID 489

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                     A  + E ML +G TPN + ++SLI      G  E    +++EM+  GC P
Sbjct: 490 GLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSP 549

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    N  +    +A + ++   LF      K Q  L  D    +  I  +         
Sbjct: 550 DLMLLNNYMDCVFKAGEIEKGRALFEEI---KAQ-GLTPDVRSYSILIHGLVKG------ 599

Query: 492 NTPNFVPNSHYSSFD-KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNH 548
               F  +++   ++ K       T  YNI++   C      KA  L+ EM+T GL P  
Sbjct: 600 ---GFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTV 656

Query: 549 ISWTILIDA 557
           +++  +ID 
Sbjct: 657 VTYGSVIDG 665



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 142/347 (40%), Gaps = 30/347 (8%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K  +L +AL+  D+ K+    PN+     +ID         ++ +I+  L  +  T +  
Sbjct: 423 KAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSV 482

Query: 293 VFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            F SL++      K      +Y+ M   G   +   Y  L++     G      +IY E+
Sbjct: 483 TFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEM 542

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
            H   +G    D+   +  +     A   +    + E++ + G+TP+  ++S LI+    
Sbjct: 543 MH---RGC-SPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVK 598

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVA 467
            G  +    LF EM + G   +++  NI++    ++ + ++A++L    ++  L  T V 
Sbjct: 599 GGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVT 658

Query: 468 LGEDYDG--NTDRISN--MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
            G   DG    DR+    M  ++ +S     N V    YSS    F             K
Sbjct: 659 YGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVV---YSSLIDGFG------------K 703

Query: 524 ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
               D      ++ E+   GL+PN  +W  L+DA   +  ++ AL C
Sbjct: 704 VGRID--EAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVC 748



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/272 (19%), Positives = 97/272 (35%), Gaps = 54/272 (19%)

Query: 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
           AH+    L + + MQ++G    +  +  L+      G    A  +  E+K          
Sbjct: 215 AHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMK----SNSFNA 270

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+  +  F       MA K   ++ S G+ P+ +T++S+I     A  V++A+ LF
Sbjct: 271 DLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELF 330

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
           EE+      P     N ++       +F+ A+ L                          
Sbjct: 331 EELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLER----------------------- 367

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN--EM 539
                                    KR    P+   YN ++  C     +V+  +   E 
Sbjct: 368 ------------------------QKRKGCIPSVIAYNCIL-TCLGRKGKVEEALRILEA 402

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
             +  +PN  S+ ILID    +G +E AL+ +
Sbjct: 403 MKMDAAPNLTSYNILIDMLCKAGELEAALKVQ 434


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 154/350 (44%), Gaps = 61/350 (17%)

Query: 222 ILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           +++ + ++ F   G+K D     + Y        SP++ +  + +D     G+  K RA+
Sbjct: 518 VVYTSLIQNFFKCGRKED---GHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRAL 574

Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           +E++++Q +  ++  ++ L++  V A   + T +++  M++ G+  D+ +YN ++   C 
Sbjct: 575 FEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCK 634

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           +G    A ++  E+K    KG L+  V TY ++V   A       A  + E+  S GV  
Sbjct: 635 SGKVDKAYQLLEEMK---TKG-LQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDL 690

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N + +SSLI+     G +++A  + EE++Q G  PNS   N LL A V+A + D A   F
Sbjct: 691 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCF 750

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
           +                       NM                        K     P   
Sbjct: 751 Q-----------------------NM------------------------KNLKCSPNAM 763

Query: 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           TY+I++   C    + +      EM+  GL PN+I++T +I     +GNV
Sbjct: 764 TYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNV 813



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 95/194 (48%), Gaps = 6/194 (3%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           N+ I  ++ID  G  G   ++  I E+L  + +T N Y +N L++  V A ++      +
Sbjct: 691 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCF 750

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           +NM+ L    +  +Y+I++   C+      A   + E++    K  LK +  TY+T++  
Sbjct: 751 QNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQ----KQGLKPNNITYTTMIAG 806

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
            A A     A  + +   ++G  P++  ++++I   ++A     A  +FEE    GC  N
Sbjct: 807 LAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVN 866

Query: 433 SQCCNILLQACVEA 446
           S+ C +LL A  +A
Sbjct: 867 SKTCVVLLDALHKA 880



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 95/193 (49%), Gaps = 10/193 (5%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           ++E+ +S  V LN+ +++SL++    V   D  + + + + MQK G+  +  ++N LL A
Sbjct: 679 LFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLI-LEELMQK-GLTPNSYTWNCLLDA 736

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
              A     AQ  +  +K+L+       +  TYS ++      + +  A    ++M   G
Sbjct: 737 LVKAEEIDEAQVCFQNMKNLKCSP----NAMTYSIMINGLCMIRKFNKAFVFWQEMQKQG 792

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + PN IT++++I   A AG V +A  LF+    +G  P+S C N +++    A +   A+
Sbjct: 793 LKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAY 852

Query: 454 RLFRSWTLSKTQV 466
            +F    L   +V
Sbjct: 853 IVFEETRLKGCRV 865



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 111/281 (39%), Gaps = 28/281 (9%)

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           V +H LK    V + M+K       ++Y  L+ A   A        ++ +++ +  +   
Sbjct: 179 VKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEA-- 236

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             +V  ++T+V+VFA       AL + ++M S   T + + ++  I+     G V+ A  
Sbjct: 237 --NVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWK 294

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT--------QVALGED 471
            F EM   G  P+      L+    +A + D A  LF    L+++         + +G  
Sbjct: 295 FFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYG 354

Query: 472 YDGNTDRISNMEHKDKQ--------------SITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
             G  D   ++  + K+              +       V  +     + R    P  TT
Sbjct: 355 SAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLTT 414

Query: 518 YNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILID 556
           YNIL+   C       AL   + M+  GL PN ++  I+ID
Sbjct: 415 YNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMID 455



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/408 (19%), Positives = 165/408 (40%), Gaps = 43/408 (10%)

Query: 190 ELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249
           + DE + +++    K  +   I Y CI      L C      G+K  +  ALR +D  ++
Sbjct: 358 KFDEAYSLLERQKRKGCIPSVIAYNCI------LTC-----LGRKGKVEEALRIHDEMRQ 406

Query: 250 HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKF 307
             ++PN+     +ID+    G+   +  + + ++   +  NI   N +++    A  L  
Sbjct: 407 D-AAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDE 465

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
              ++  +       D  ++  L+      G    A  +Y   K L++  +   +V  Y+
Sbjct: 466 ACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYE--KMLDSDQIP--NVVVYT 521

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           ++++ F      +   K+ ++M+  G +P+ +  +S ++    AG VE+   LFEE+   
Sbjct: 522 SLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQ 581

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDR- 478
           G  P+ +  +IL+   V+A      ++LF            L+   V  G    G  D+ 
Sbjct: 582 GLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKA 641

Query: 479 ---ISNMEHKDKQSITNTPNFVPN--SHYSSFDKRFSF----KPTTTTYNILMKACCTDY 529
              +  M+ K  Q    T   V +  +     D+ +      K      N+++ +   D 
Sbjct: 642 YQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDG 701

Query: 530 Y-------RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           +           ++ E+   GL+PN  +W  L+DA   +  ++ A  C
Sbjct: 702 FGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVC 749



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 86/436 (19%), Positives = 171/436 (39%), Gaps = 78/436 (17%)

Query: 203 NKPDVNLAIRYAC--IVPRADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYIC 259
           N+PD  L + +    I   A++ LF   VR F ++  + +AL   D  K +  + ++ + 
Sbjct: 217 NRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLY 276

Query: 260 RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNM-- 315
              ID  G  G    +   + ++++Q +  +   + +L+ V   A  L   +E+++ +  
Sbjct: 277 NVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDL 336

Query: 316 ---------------------------------QKLGVMADMASYNILLKACCLAGNTVL 342
                                            ++ G +  + +YN +L      G    
Sbjct: 337 NRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEE 396

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A  I+ E++   A      ++ TY+ ++ +   A   + ALKV++ M  AG+ PN +T +
Sbjct: 397 ALRIHDEMRQDAAP-----NLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVN 451

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
            +I+    A  +++A  +F  +    C P+S+    L+       + D A+ L+    L 
Sbjct: 452 IMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEK-MLD 510

Query: 463 KTQVALGEDYDGNTDRISNM--------EHKDKQSITN---TPNFVPNSHY--------- 502
             Q+     Y   T  I N          HK  + + +   +P+ +  + Y         
Sbjct: 511 SDQIPNVVVY---TSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGE 567

Query: 503 -----SSFD--KRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTI 553
                + F+  K     P   +Y+IL+       +      L  EM+  GL  + +++  
Sbjct: 568 VEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNT 627

Query: 554 LIDACGGSGNVEGALQ 569
           +ID    SG V+ A Q
Sbjct: 628 VIDGFCKSGKVDKAYQ 643


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 141/322 (43%), Gaps = 55/322 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SP       +I   G  G  +++ AI+E+++   +      +N L+   V A  LK    
Sbjct: 288 SPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEF 347

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +   M++ GV  D  +Y++L+ A   AG    A+ +   +K +EA  ++  + + +S I+
Sbjct: 348 IVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIV---LKEMEANNIMP-NSYVFSRIL 403

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             + D   WQ + +V ++M ++GV P+   ++ +I+       ++ AM  F++ML  G +
Sbjct: 404 ASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQ 463

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P++   N L+    +A   +RA  LF                         ME       
Sbjct: 464 PDTVTWNTLIDCHCKAELHERAEELFEEM----------------------MEK------ 495

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNH 548
                               F P  TT+NI++ +      +  VK LM  MR++GL PN 
Sbjct: 496 -------------------GFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNV 536

Query: 549 ISWTILIDACGGSGNVEGALQC 570
           +++T LID  G SG    A++C
Sbjct: 537 VTYTTLIDIYGKSGRFSDAIEC 558



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 140/311 (45%), Gaps = 26/311 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           PN Y+   I+      G++ KS  + +++++  V  + + +N +++       L   ++ 
Sbjct: 394 PNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDT 453

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M   G+  D  ++N L+   C A     A+E++ E+     KG     V T++ ++ 
Sbjct: 454 FDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMME---KGFSPC-VTTFNIMIN 509

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F + + W     +  +M S G+ PN +T+++LI+    +G    A+   E+M  AG +P
Sbjct: 510 SFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKP 569

Query: 432 NSQCCNILLQACVE---ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           +S   N L+ A  +   + Q   AFRL R+ +L  + +AL    +   +     + +D +
Sbjct: 570 SSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGE-----DRRDAE 624

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSP 546
           + +             + K    KP   TY  LMKA      + +V ++  EM   G +P
Sbjct: 625 AFS----------VLKYMKENDLKPDVVTYTTLMKALIRVDKFNKVPSVYEEMILAGCTP 674

Query: 547 NHISWTILIDA 557
           +  +  +L  A
Sbjct: 675 DRKARAMLRSA 685


>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
 gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
          Length = 668

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 150/353 (42%), Gaps = 56/353 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY-ED 281
           LF + +  F +     +AL    +++    +P       +I   G  G   ++ A++ E 
Sbjct: 230 LFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEF 289

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
             +  +      +N+L+   V    LK   +V   M + GV  D A+Y++L+ A   AG 
Sbjct: 290 FLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGR 349

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ +   +K +EA GV K   + +S I+  F D   WQ A  V  +M ++GV P+  
Sbjct: 350 WESARIL---LKEMEADGV-KPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRH 405

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++ +I+       +  AM  F +M + G EP+    N L+ A  +  + DRA  LF   
Sbjct: 406 FYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELF--- 462

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                     ++   +N P                  P TTTYN
Sbjct: 463 --------------------------EEMRESNCP------------------PGTTTYN 478

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           I++        +  V+A+++EM+  GL PN I++T L+D  G SG  + A+ C
Sbjct: 479 IMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDC 531



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/305 (19%), Positives = 134/305 (43%), Gaps = 20/305 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P+ Y+   I+      GD+ K+ A+  ++++  V  + + +N +++       L   ++ 
Sbjct: 367 PSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDA 426

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M++ G+  D+ ++N L+ A C  G    A E++ E++             TY+ ++ 
Sbjct: 427 FNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPP----GTTTYNIMIN 482

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +  + + W+    +  +M   G+ PN IT+++L++    +G  ++A+   E M   G +P
Sbjct: 483 LLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKP 542

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    + L+ A  +    D A  + ++      +V++        + + N   +D++ + 
Sbjct: 543 SPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSI-----LVLNSLINAFGEDRRVVE 597

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHI 549
                        F +    +P   TY  LMKA      + +V  +  EM T G +P+  
Sbjct: 598 AFSVL-------QFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRK 650

Query: 550 SWTIL 554
           +  +L
Sbjct: 651 ARAML 655



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 106/236 (44%), Gaps = 7/236 (2%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R D  F N  +  FGK   L  A+ A++  ++    P++    T+ID     G + ++  
Sbjct: 401 RPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAE 460

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E++R  N       +N ++N+       +    +   M++ G++ ++ +Y  L+    
Sbjct: 461 LFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYG 520

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +G     +E    ++ ++A G LK     Y  +V  +A       AL V + M + G+ 
Sbjct: 521 RSGRY---KEAIDCIEAMKADG-LKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLE 576

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            + +  +SLINA      V +A  + + M + G  P+      L++A +   QFD+
Sbjct: 577 VSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDK 632


>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 668

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 150/353 (42%), Gaps = 56/353 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY-ED 281
           LF + +  F +     +AL    +++    +P       +I   G  G   ++ A++ E 
Sbjct: 230 LFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEF 289

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
             +  +      +N+L+   V    LK   +V   M + GV  D A+Y++L+ A   AG 
Sbjct: 290 FLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGR 349

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ +   +K +EA GV K   + +S I+  F D   WQ A  V  +M ++GV P+  
Sbjct: 350 WESARIL---LKEMEADGV-KPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRH 405

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++ +I+       +  AM  F +M + G EP+    N L+ A  +  + DRA  LF   
Sbjct: 406 FYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELF--- 462

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                     ++   +N P                  P TTTYN
Sbjct: 463 --------------------------EEMRESNCP------------------PGTTTYN 478

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           I++        +  V+A+++EM+  GL PN I++T L+D  G SG  + A+ C
Sbjct: 479 IMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDC 531



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/305 (19%), Positives = 134/305 (43%), Gaps = 20/305 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P+ Y+   I+      GD+ K+ A+  ++++  V  + + +N +++       L   ++ 
Sbjct: 367 PSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDA 426

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M++ G+  D+ ++N L+ A C  G    A E++ E++             TY+ ++ 
Sbjct: 427 FNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPP----GTTTYNIMIN 482

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +  + + W+    +  +M   G+ PN IT+++L++    +G  ++A+   E M   G +P
Sbjct: 483 LLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKP 542

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    + L+ A  +    D A  + ++      +V++        + + N   +D++ + 
Sbjct: 543 SPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSI-----LVLNSLINAFGEDRRVVE 597

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHI 549
                        F +    +P   TY  LMKA      + +V  +  EM T G +P+  
Sbjct: 598 AFSVL-------QFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRK 650

Query: 550 SWTIL 554
           +  +L
Sbjct: 651 ARAML 655



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 106/236 (44%), Gaps = 7/236 (2%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R D  F N  +  FGK   L  A+ A++  ++    P++    T+ID     G + ++  
Sbjct: 401 RPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAE 460

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E++R  N       +N ++N+       +    +   M++ G++ ++ +Y  L+    
Sbjct: 461 LFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYG 520

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +G     +E    ++ ++A G LK     Y  +V  +A       AL V + M + G+ 
Sbjct: 521 RSGRY---KEAIDCIEAMKADG-LKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLE 576

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            + +  +SLINA      V +A  + + M + G  P+      L++A +   QFD+
Sbjct: 577 VSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDK 632


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 152/354 (42%), Gaps = 59/354 (16%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           +   +  +  + ++  A R  DA +     P+ Y   ++I   G+C  G   ++  +++ 
Sbjct: 265 YNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLIS--GMCKEGRLEEASGLFDK 322

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    +  N   +N+L++   N  DL+        M K G+M  +++YN+L+ A  + G 
Sbjct: 323 MVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGR 382

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++   +K +  KG++  D  TY+ ++  ++     + A  +  +MLS G+ P  +
Sbjct: 383 MGEADDM---IKEMRKKGIIP-DAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHV 438

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++SLI   +    +++A  LFE++L  G  P+    N ++         +RAF L +  
Sbjct: 439 TYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEM 498

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                     D++S+                      P   T+N
Sbjct: 499 --------------------------DRKSVP---------------------PDEVTFN 511

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            LM+  C +      + L++EM+  G+ P+HIS+  LI   G  G+++ A + R
Sbjct: 512 TLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVR 565



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 132/289 (45%), Gaps = 25/289 (8%)

Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           C   MK + I   + + N  L+++     + +N  ++ + L  Y  M +L + + + ++N
Sbjct: 179 CFYMMKEKGIVPKIETCNDMLSLF-----LKLNRMEMAWVL--YAEMFRLRISSTVYTFN 231

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           I++   C  G    A+E  G    +E  G  K +V +Y+TI+  ++     + A ++ + 
Sbjct: 232 IMVNVLCKEGKLKKAREFIG---FMEGLG-FKPNVVSYNTIIHGYSSRGNIEGARRILDA 287

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M   G+ P++ T+ SLI+     G +E+A  LF++M++ G  PN+   N L+        
Sbjct: 288 MRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGD 347

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
            +RAF  +R   + K  +     Y+     +  ME +  ++                 ++
Sbjct: 348 LERAFS-YRDEMVKKGIMPSVSTYNLLVHALF-MEGRMGEADDMIKEM----------RK 395

Query: 509 FSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILI 555
               P   TYNIL+     C +  +   L NEM + G+ P H+++T LI
Sbjct: 396 KGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI 444



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 146/323 (45%), Gaps = 35/323 (10%)

Query: 125 REGRIDCVVGVLKKLNELGVAP-----LELFDGSGFKLLKNECQRLLDSGEVEMFVGLME 179
           +EGR++   G+  K+ E+G+ P       L DG      K + +R     +  +  G+M 
Sbjct: 309 KEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGY---CNKGDLERAFSYRDEMVKKGIMP 365

Query: 180 VLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---DILFCNFVREFGKKRD 236
            +  + L V  L  E R+ +      D+   +R   I+P A   +IL   + R       
Sbjct: 366 SVSTYNLLVHALFMEGRMGE----ADDMIKEMRKKGIIPDAITYNILINGYSR------- 414

Query: 237 LVSALRAYDASKKHLS---SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
             +A +A+D   + LS    P      ++I V        ++  ++E +  Q V+ ++ +
Sbjct: 415 CGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIM 474

Query: 294 FNSLMNVNAH----DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
           FN++  V+ H    +++    + K M +  V  D  ++N L++  C  G    A+ +  E
Sbjct: 475 FNAM--VDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDE 532

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +K    +G+ K D  +Y+T++  +      + A +V+++MLS G  P  +T+++LI    
Sbjct: 533 MKR---RGI-KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLC 588

Query: 410 NAGLVEQAMHLFEEMLQAGCEPN 432
                + A  L +EM+  G  P+
Sbjct: 589 KNQEGDLAEELLKEMVNKGISPD 611



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/269 (20%), Positives = 108/269 (40%), Gaps = 42/269 (15%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M++ G++  + + N +L          +A  +Y E+  L         V+T++ +V V  
Sbjct: 183 MKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISST----VYTFNIMVNVLC 238

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                + A +    M   G  PN ++++++I+  ++ G +E A  + + M   G EP+S 
Sbjct: 239 KEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSY 298

Query: 435 CCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
               L+    +  + + A  LF       L    V      DG  ++             
Sbjct: 299 TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNK------------- 345

Query: 492 NTPNFVPNSHYSSFDKRFSFK---------PTTTTYNILMKACCTDYYRVKA--LMNEMR 540
                         ++ FS++         P+ +TYN+L+ A   +    +A  ++ EMR
Sbjct: 346 -----------GDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMR 394

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQ 569
             G+ P+ I++ ILI+     GN + A  
Sbjct: 395 KKGIIPDAITYNILINGYSRCGNAKKAFD 423


>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 564

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 132/320 (41%), Gaps = 55/320 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           SPN+    + +  CG  G + ++  + + +  + V  N + F++ ++    A   +  L 
Sbjct: 144 SPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALT 203

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + + M+      ++ +Y   + AC  AG   LAQ +  E++    KGV   +V T+++ +
Sbjct: 204 ILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMRE---KGVAP-NVITFNSAI 259

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
               +   WQ AL +  DM S GV PN  ++++ + AC +     +A+ + E+M   G  
Sbjct: 260 SALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIR 319

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
            +       + AC +   ++ A  L                           E +D+   
Sbjct: 320 GDEVSFTAAIDACAQGGAWEMALALLD-------------------------EMRDE--- 351

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNH 548
                                 PT  +++  + AC     + R  AL+ EM  VG+SPN 
Sbjct: 352 -------------------GIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNE 392

Query: 549 ISWTILIDACGGSGNVEGAL 568
           +S+   IDACG +G    AL
Sbjct: 393 VSFNAAIDACGRAGQWRAAL 412



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 147/366 (40%), Gaps = 65/366 (17%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP  +  F   V   GK      AL      +     PN+      ID CG  G++  ++
Sbjct: 178 VPPNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQ 237

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            +  ++R + V  N+  FNS ++   N    +  L + ++M  +GV  +M SY   + AC
Sbjct: 238 GLLAEMREKGVAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTAC 297

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
                   A  ++   + + ++G+ + D  +++  +   A    W+MAL + ++M   G+
Sbjct: 298 GDNNRWARALAVH---EQMRSRGI-RGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGI 353

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P   ++S+ I+AC       +A+ L  EM + G  PN    N  + AC  A Q+  A  
Sbjct: 354 PPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALS 413

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           L                              DK S    P                    
Sbjct: 414 LL-----------------------------DKMSSAGVPR------------------G 426

Query: 515 TTTYNILMKAC--CTDYYRVKALMNEM-----RTVG-LSP----NHISWTILIDACGGSG 562
           T TYN ++ AC    ++ R  +++ EM     +T G ++P    + +S++  IDAC  +G
Sbjct: 427 TITYNAVIAACGKGKEWARAVSVLREMLAGQAKTDGDMAPVPMADVVSYSAAIDACVRAG 486

Query: 563 NVEGAL 568
             E A+
Sbjct: 487 EWEEAI 492



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 127/296 (42%), Gaps = 24/296 (8%)

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN- 339
           R   V  ++Y ++ LM+  A   ++   L +   M+  GV  D  ++   + AC   G  
Sbjct: 61  REDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQW 120

Query: 340 ----TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
                +L Q     +  + A G L  +V T+S+ V    +A  W+ AL + + M   GV 
Sbjct: 121 ERAVALLDQRALRLLGEMAAVG-LSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVP 179

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN  T+S+ ++AC  AG    A+ +   M  A C PN Q     + AC +A ++    RL
Sbjct: 180 PNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEW----RL 235

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDK-QSITNTPNFVPNSHYSSFDKRFSFKPT 514
            +       +  +  +       IS + +  + Q   N    +P+            +P 
Sbjct: 236 AQGLLAEMREKGVAPNVITFNSAISALGNGGQWQEALNLLRDMPS---------MGVQPN 286

Query: 515 TTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             +Y   + AC  +  + R  A+  +MR+ G+  + +S+T  IDAC   G  E AL
Sbjct: 287 MWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMAL 342



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 94/214 (43%), Gaps = 16/214 (7%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           PNM+     +  CG    + ++ A++E +RS+ +  +   F + ++  A     +  L +
Sbjct: 285 PNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALAL 344

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M+  G+   + S++  + AC   G           ++ +E  GV   +V +++  + 
Sbjct: 345 LDEMRDEGIPPTVRSFSTAISAC---GKGQQWGRAVALLREMEEVGVSPNEV-SFNAAID 400

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               A  W+ AL + + M SAGV   TIT++++I AC       +A+ +  EML    + 
Sbjct: 401 ACGRAGQWRAALSLLDKMSSAGVPRGTITYNAVIAACGKGKEWARAVSVLREMLAGQAKT 460

Query: 432 NSQCCNI----------LLQACVEACQFDRAFRL 455
           +     +           + ACV A +++ A  L
Sbjct: 461 DGDMAPVPMADVVSYSAAIDACVRAGEWEEAISL 494



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 82/172 (47%), Gaps = 16/172 (9%)

Query: 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGV 320
           ID C   G +  + A+ +++R + +   +  F++ ++      ++   + + + M+++GV
Sbjct: 329 IDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGV 388

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             +  S+N  + AC  AG    A  +   +  + + GV +    TY+ ++      K W 
Sbjct: 389 SPNEVSFNAAIDACGRAGQWRAALSL---LDKMSSAGVPR-GTITYNAVIAACGKGKEWA 444

Query: 381 MALKVKEDMLSA------GVTP----NTITWSSLINACANAGLVEQAMHLFE 422
            A+ V  +ML+        + P    + +++S+ I+AC  AG  E+A+ L E
Sbjct: 445 RAVSVLREMLAGQAKTDGDMAPVPMADVVSYSAAIDACVRAGEWEEAISLVE 496


>gi|299469706|emb|CBN76560.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 915

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 148/333 (44%), Gaps = 43/333 (12%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAH 303
           ++   SPN     + I  C    D   +  +  D+R   V  N  V N+ ++     +A 
Sbjct: 354 RREGPSPNSQCYASAITACARAHDPRSAMRLLADMREDGVPPNDVVLNAAVDACGKGDAP 413

Query: 304 DLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
           D    L++ + M+K  GV  +  ++N  +     AG    A+ +  E+     +G LK D
Sbjct: 414 D--EALKLLRGMEKAYGVKPNTVTFNSAISGLSRAGRAREAKALLNEMSE---RG-LKPD 467

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
            F+++  ++ FA A   +    + ++M S G+  + +++ + ++ACA AG V+ A+ L +
Sbjct: 468 NFSFNAAMQGFAAAGDPRNTASLSDEMKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLK 527

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
           EM +AG EPN+   N  L AC  A +   A +L R   + +T V                
Sbjct: 528 EMQEAGVEPNTVVYNSALDACGRAGKPKVAEKLLRK--MGETGVV--------------- 570

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSF---------KPTTTTYNILMKAC--CTDYYR 531
             +D  S T     V  S     DK   +          P   TYN  M AC    +  +
Sbjct: 571 --RDATSYTGA--IVACSRNGDGDKALEWLETMSKEGIAPEAITYNYAMAACGRSGNDRQ 626

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
            + L+NEMR  G++PN IS++  + A G +G +
Sbjct: 627 AEWLLNEMRGQGVTPNRISYSAAMFALGKAGRL 659



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 143/363 (39%), Gaps = 45/363 (12%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +    ++E  K RD    L A +   K     N  +C   I   G  G + ++  + + +
Sbjct: 191 MLAARIKELAKARDFEGMLEALEEGPK-----NAIVCTVAITCLGQAGKWREAVEVLDGM 245

Query: 283 -RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            +  + +     F     +NA       +  + ++ + ++ +M +  +     C  G+ +
Sbjct: 246 GKGGDGSDRPDAFAYAATINACG-----KAGRPVEAVALLTEMPTRRVKPDVVCF-GSAI 299

Query: 342 LAQEIYGEVKHLE------AKGVLKLDVFTYSTIVKVFADAK---WWQMALKVKEDMLSA 392
            A    GEV   +       KG  +        I    AD K     + AL++ ++M   
Sbjct: 300 FA---LGEVAGTQNRSTWGRKGADEGGEGGDKPIASAVADPKPTRAHEKALELIQEMRRE 356

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G +PN+  ++S I ACA A     AM L  +M + G  PN    N  + AC +    D A
Sbjct: 357 GPSPNSQCYASAITACARAHDPRSAMRLLADMREDGVPPNDVVLNAAVDACGKGDAPDEA 416

Query: 453 FRLFR----SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
            +L R    ++ +    V       G +      E K              +  +   +R
Sbjct: 417 LKLLRGMEKAYGVKPNTVTFNSAISGLSRAGRAREAK--------------ALLNEMSER 462

Query: 509 FSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
              KP   ++N  M+  A   D     +L +EM++ G+  + +S+   + AC  +G+V+G
Sbjct: 463 -GLKPDNFSFNAAMQGFAAAGDPRNTASLSDEMKSRGIGMDVVSYGTAVSACAKAGDVKG 521

Query: 567 ALQ 569
           AL+
Sbjct: 522 ALK 524



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 6/199 (3%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           T +  C   GD   +  + ++++   V  N  V+NS ++    A   K   ++ + M + 
Sbjct: 508 TAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALDACGRAGKPKVAEKLLRKMGET 567

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           GV+ D  SY   + AC   G+   A E    ++ +  +G+   +  TY+  +     +  
Sbjct: 568 GVVRDATSYTGAIVACSRNGDGDKALEW---LETMSKEGIAP-EAITYNYAMAACGRSGN 623

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            + A  +  +M   GVTPN I++S+ + A   AG +   + L EEM + G E +    +I
Sbjct: 624 DRQAEWLLNEMRGQGVTPNRISYSAAMFALGKAGRLPDVLSLLEEMHREGVEADEVTYHI 683

Query: 439 LLQACVEACQFDRAFRLFR 457
            + A   A     A  LFR
Sbjct: 684 AVDAASIARDLGCAMDLFR 702



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 6/209 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   V    K  D+  AL+     ++    PN  +  + +D CG  G    +  +   
Sbjct: 504 VSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALDACGRAGKPKVAEKLLRK 563

Query: 282 LRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    V  +   +   +   +   D    LE  + M K G+  +  +YN  + AC  +GN
Sbjct: 564 MGETGVVRDATSYTGAIVACSRNGDGDKALEWLETMSKEGIAPEAITYNYAMAACGRSGN 623

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ +  E++    +GV   +  +YS  +     A      L + E+M   GV  + +
Sbjct: 624 DRQAEWLLNEMR---GQGVTP-NRISYSAAMFALGKAGRLPDVLSLLEEMHREGVEADEV 679

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAG 428
           T+   ++A + A  +  AM LF EM   G
Sbjct: 680 TYHIAVDAASIARDLGCAMDLFREMRARG 708


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 141/320 (44%), Gaps = 63/320 (19%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLK 306
           +P++Y    +I   G+C  G    +R ++E +  + +  N  VF  L  ++AH    D +
Sbjct: 307 TPDVYTYGALIQ--GLCRVGRIEDARGVFEKMCGRGMKPNAVVFTIL--IDAHCKKGDAE 362

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             LE+++ M++ GV  D  +YN ++   C A +   A  I  E++       L+ D  TY
Sbjct: 363 TMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMR----SAGLRPDTVTY 418

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++  +   +   MA+++K++M++ GV  + +T+++LI+  + AG    A  +  EM++
Sbjct: 419 TTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMME 478

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
           AG EP++    +++ A           RL +                        M++K 
Sbjct: 479 AGLEPDNTTYTMVIDAFCRKGDVKTGLRLLK-----------------------EMQNKG 515

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGL 544
           +                        KP   TYN++M   C          L+N M  +G+
Sbjct: 516 R------------------------KPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGV 551

Query: 545 SPNHISWTILIDACGGSGNV 564
           SP+ I++ IL+D     G V
Sbjct: 552 SPDDITYNILLDGHCKHGKV 571



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 119/272 (43%), Gaps = 13/272 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN  +   +ID     GD      ++ ++R + V  +   +N+++N    A DLK    +
Sbjct: 343 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGI 402

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M+  G+  D  +Y  L+   C      +A EI    +++ A+GV  LD  TY+ ++ 
Sbjct: 403 VVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIK---QNMVAEGV-GLDEVTYTALIS 458

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
             + A     A +V  +M+ AG+ P+  T++ +I+A    G V+  + L +EM   G +P
Sbjct: 459 GLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKP 518

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQ 488
                N+++    +  Q   A  L  +     +S   +      DG+     + +  D +
Sbjct: 519 GVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHC---KHGKVTDIE 575

Query: 489 SITNTPNFVPN-SHYSSFDKRFSFKPTTTTYN 519
            + +    VP+   Y+S       K TT TY+
Sbjct: 576 ELKSAKGTVPDLGVYTSIVGEIVKKKTTKTYH 607



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 122/299 (40%), Gaps = 24/299 (8%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A Y  L    +     +FN LM   V   +L     V+  MQ  GV   + S+N ++   
Sbjct: 226 AFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGM 285

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C AG+   A+ ++   + +   GV   DV+TY  +++        + A  V E M   G+
Sbjct: 286 CRAGDLDGAETLH---RRMSEAGVTP-DVYTYGALIQGLCRVGRIEDARGVFEKMCGRGM 341

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PN + ++ LI+A    G  E  + L  EM + G  P++   N ++     A     A  
Sbjct: 342 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASG 401

Query: 455 L---FRSWTLSKTQVALGEDYDGN-TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
           +    RS  L    V      DG   +   +M  + KQ++      +    Y++     S
Sbjct: 402 IVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLS 461

Query: 511 FKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               +            D  RV   + EM   GL P++ ++T++IDA    G+V+  L+
Sbjct: 462 KAGRS-----------ADAERV---LGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLR 506


>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 617

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 150/353 (42%), Gaps = 56/353 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY-ED 281
           LF + +  F +     +AL    +++    +P       +I   G  G   ++ A++ E 
Sbjct: 230 LFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEF 289

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
             +  +      +N+L+   V    LK   +V   M + GV  D A+Y++L+ A   AG 
Sbjct: 290 FLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGR 349

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ +   +K +EA GV K   + +S I+  F D   WQ A  V  +M ++GV P+  
Sbjct: 350 WESARIL---LKEMEADGV-KPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRH 405

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++ +I+       +  AM  F +M + G EP+    N L+ A  +  + DRA  LF   
Sbjct: 406 FYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELF--- 462

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                     ++   +N P                  P TTTYN
Sbjct: 463 --------------------------EEMRESNCP------------------PGTTTYN 478

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           I++        +  V+A+++EM+  GL PN I++T L+D  G SG  + A+ C
Sbjct: 479 IMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDC 531



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 93/194 (47%), Gaps = 6/194 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P+ Y+   I+      GD+ K+ A+  ++++  V  + + +N +++       L   ++ 
Sbjct: 367 PSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDA 426

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M++ G+  D+ ++N L+ A C  G    A E++ E++             TY+ ++ 
Sbjct: 427 FNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPP----GTTTYNIMIN 482

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +  + + W+    +  +M   G+ PN IT+++L++    +G  ++A+   E M   G +P
Sbjct: 483 LLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKP 542

Query: 432 NSQCCNILLQACVE 445
           +    + L+ A  +
Sbjct: 543 SPTMYHALVNAYAQ 556



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 99/224 (44%), Gaps = 23/224 (10%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R D  F N  +  FGK   L  A+ A++  ++    P++    T+ID     G + ++  
Sbjct: 401 RPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAE 460

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E++R  N       +N ++N+       +    +   M++ G++ ++ +Y  L+    
Sbjct: 461 LFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYG 520

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +G     +E    ++ ++A G LK     Y  +V  +A                  G+ 
Sbjct: 521 RSGRY---KEAIDCIEAMKADG-LKPSPTMYHALVNAYA----------------QRGLR 560

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           P+ IT+++L+ A       ++   ++EEM+ +GC P+ +   +L
Sbjct: 561 PDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAML 604


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 187/450 (41%), Gaps = 86/450 (19%)

Query: 129 IDCVVGVLKKLNELGVAPLELFDGSG---FKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185
           +D +V    K  E+ +A LE FD +G   F+L    C  +L S   E  +G++E +    
Sbjct: 162 VDMLVWAYVKNGEMDLA-LEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESV---- 216

Query: 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245
              KE+       ++ VN    ++ I   C V +           F K  D+V  ++A+ 
Sbjct: 217 --YKEMIRR----RIGVNVVTFDVVINGLCKVGK-----------FQKAGDVVEDMKAWG 259

Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305
            S      P++    TIID     G   K+ A+ +++ ++ +  N   FN L++    D 
Sbjct: 260 FS------PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDE 313

Query: 306 KFTL--EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
             T   +V++ MQ+ G+  ++ +YN L+   C  G      E  G    +   G LK +V
Sbjct: 314 NVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL---DEALGLQDKMSGMG-LKPNV 369

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY+ ++  F   K  + A ++ +D+   G+ PN IT+++LI+A   AG ++ A  L   
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSM 429

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           ML  G  PN    N L+           A +             L ++ +GN        
Sbjct: 430 MLDTGVCPNVSTYNCLIVGFCREGNVKEARK-------------LAKEMEGN-------- 468

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRT 541
                                       K    TYNIL+ A C      KA  L++EM  
Sbjct: 469 --------------------------GLKADLVTYNILVDALCKKGETRKAVRLLDEMFE 502

Query: 542 VGLSPNHISWTILIDACGGSGNVEGALQCR 571
           VGL+P+H+++  LID     GN   AL  R
Sbjct: 503 VGLNPSHLTYNALIDGYFREGNSTAALNVR 532



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 6/221 (2%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  F KK+ L  A    D   K   +PN+    T+ID  G  G    +  +   +    
Sbjct: 375 LINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTG 434

Query: 287 VTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           V  N+  +N L+       ++K   ++ K M+  G+ AD+ +YNIL+ A C  G T  A 
Sbjct: 435 VCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAV 494

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
            +  E+  +     L     TY+ ++  +        AL V+  M   G   N +T++ L
Sbjct: 495 RLLDEMFEVG----LNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVL 550

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
           I    N G +E+A  L  EML+ G  PN    +IL    +E
Sbjct: 551 IKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMME 591


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 141/320 (44%), Gaps = 63/320 (19%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLK 306
           +P++Y    +I   G+C  G    +R ++E +  + +  N  VF  L  ++AH    D +
Sbjct: 183 TPDVYTYGALIQ--GLCRVGRIEDARGVFEKMCGRGMKPNAVVFTIL--IDAHCKKGDAE 238

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             LE+++ M++ GV  D  +YN ++   C A +   A  I  E++       L+ D  TY
Sbjct: 239 TMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMR----SAGLRPDTVTY 294

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++  +   +   MA+++K++M++ GV  + +T+++LI+  + AG    A  +  EM++
Sbjct: 295 TTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMME 354

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
           AG EP++    +++ A           RL +                        M++K 
Sbjct: 355 AGLEPDNTTYTMVIDAFCRKGDVKTGLRLLK-----------------------EMQNKG 391

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGL 544
           +                        KP   TYN++M   C          L+N M  +G+
Sbjct: 392 R------------------------KPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGV 427

Query: 545 SPNHISWTILIDACGGSGNV 564
           SP+ I++ IL+D     G V
Sbjct: 428 SPDDITYNILLDGHCKHGKV 447



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 119/272 (43%), Gaps = 13/272 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN  +   +ID     GD      ++ ++R + V  +   +N+++N    A DLK    +
Sbjct: 219 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGI 278

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M+  G+  D  +Y  L+   C      +A EI    +++ A+GV  LD  TY+ ++ 
Sbjct: 279 VVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIK---QNMVAEGV-GLDEVTYTALIS 334

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
             + A     A +V  +M+ AG+ P+  T++ +I+A    G V+  + L +EM   G +P
Sbjct: 335 GLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKP 394

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQ 488
                N+++    +  Q   A  L  +     +S   +      DG+     + +  D +
Sbjct: 395 GVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHC---KHGKVTDIE 451

Query: 489 SITNTPNFVPN-SHYSSFDKRFSFKPTTTTYN 519
            + +    VP+   Y+S       K TT TY+
Sbjct: 452 ELKSAKGTVPDLGVYTSIVGEIVKKKTTKTYH 483



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 122/299 (40%), Gaps = 24/299 (8%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A Y  L    +     +FN LM   V   +L     V+  MQ  GV   + S+N ++   
Sbjct: 102 AFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGM 161

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C AG+   A+ ++   + +   GV   DV+TY  +++        + A  V E M   G+
Sbjct: 162 CRAGDLDGAETLH---RRMSEAGVTP-DVYTYGALIQGLCRVGRIEDARGVFEKMCGRGM 217

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PN + ++ LI+A    G  E  + L  EM + G  P++   N ++     A     A  
Sbjct: 218 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASG 277

Query: 455 L---FRSWTLSKTQVALGEDYDGN-TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
           +    RS  L    V      DG   +   +M  + KQ++      +    Y++     S
Sbjct: 278 IVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLS 337

Query: 511 FKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               +            D  RV   + EM   GL P++ ++T++IDA    G+V+  L+
Sbjct: 338 KAGRS-----------ADAERV---LGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLR 382


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 152/354 (42%), Gaps = 59/354 (16%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           +   +  +  + ++  A R  DA +     P+ Y   ++I   G+C  G   ++  +++ 
Sbjct: 287 YNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLIS--GMCKEGRLEEASGLFDK 344

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    +  N   +N+L++   N  DL+        M K G+M  +++YN+L+ A  + G 
Sbjct: 345 MVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGR 404

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++   +K +  KG++  D  TY+ ++  ++     + A  +  +MLS G+ P  +
Sbjct: 405 MGEADDM---IKEMRKKGIIP-DAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHV 460

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++SLI   +    +++A  LFE++L  G  P+    N ++         +RAF L +  
Sbjct: 461 TYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEM 520

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                     D++S+                      P   T+N
Sbjct: 521 --------------------------DRKSVP---------------------PDEVTFN 533

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            LM+  C +      + L++EM+  G+ P+HIS+  LI   G  G+++ A + R
Sbjct: 534 TLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVR 587



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 132/289 (45%), Gaps = 25/289 (8%)

Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           C   MK + I   + + N  L+++     + +N  ++ + L  Y  M +L + + + ++N
Sbjct: 201 CFYMMKEKGIVPKIETCNDMLSLF-----LKLNRMEMAWVL--YAEMFRLRISSTVYTFN 253

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           I++   C  G    A+E  G    +E  G  K +V +Y+TI+  ++     + A ++ + 
Sbjct: 254 IMVNVLCKEGKLKKAREFIG---FMEGLG-FKPNVVSYNTIIHGYSSRGNIEGARRILDA 309

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M   G+ P++ T+ SLI+     G +E+A  LF++M++ G  PN+   N L+        
Sbjct: 310 MRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGD 369

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
            +RAF  +R   + K  +     Y+     +  ME +  ++                 ++
Sbjct: 370 LERAFS-YRDEMVKKGIMPSVSTYNLLVHALF-MEGRMGEADDMIKEM----------RK 417

Query: 509 FSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILI 555
               P   TYNIL+     C +  +   L NEM + G+ P H+++T LI
Sbjct: 418 KGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI 466



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 146/323 (45%), Gaps = 35/323 (10%)

Query: 125 REGRIDCVVGVLKKLNELGVAP-----LELFDGSGFKLLKNECQRLLDSGEVEMFVGLME 179
           +EGR++   G+  K+ E+G+ P       L DG      K + +R     +  +  G+M 
Sbjct: 331 KEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGY---CNKGDLERAFSYRDEMVKKGIMP 387

Query: 180 VLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---DILFCNFVREFGKKRD 236
            +  + L V  L  E R+ +      D+   +R   I+P A   +IL   + R       
Sbjct: 388 SVSTYNLLVHALFMEGRMGE----ADDMIKEMRKKGIIPDAITYNILINGYSR------- 436

Query: 237 LVSALRAYDASKKHLS---SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
             +A +A+D   + LS    P      ++I V        ++  ++E +  Q V+ ++ +
Sbjct: 437 CGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIM 496

Query: 294 FNSLMNVNAH----DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
           FN++  V+ H    +++    + K M +  V  D  ++N L++  C  G    A+ +  E
Sbjct: 497 FNAM--VDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDE 554

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +K    +G+ K D  +Y+T++  +      + A +V+++MLS G  P  +T+++LI    
Sbjct: 555 MKR---RGI-KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLC 610

Query: 410 NAGLVEQAMHLFEEMLQAGCEPN 432
                + A  L +EM+  G  P+
Sbjct: 611 KNQEGDLAEELLKEMVNKGISPD 633



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/269 (20%), Positives = 108/269 (40%), Gaps = 42/269 (15%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M++ G++  + + N +L          +A  +Y E+  L         V+T++ +V V  
Sbjct: 205 MKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISST----VYTFNIMVNVLC 260

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                + A +    M   G  PN ++++++I+  ++ G +E A  + + M   G EP+S 
Sbjct: 261 KEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSY 320

Query: 435 CCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
               L+    +  + + A  LF       L    V      DG  ++             
Sbjct: 321 TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNK------------- 367

Query: 492 NTPNFVPNSHYSSFDKRFSFK---------PTTTTYNILMKACCTDYYRVKA--LMNEMR 540
                         ++ FS++         P+ +TYN+L+ A   +    +A  ++ EMR
Sbjct: 368 -----------GDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMR 416

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQ 569
             G+ P+ I++ ILI+     GN + A  
Sbjct: 417 KKGIIPDAITYNILINGYSRCGNAKKAFD 445


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 144/342 (42%), Gaps = 56/342 (16%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
            G++  L      +D    H  +P+++    +I+  G  G Y  S  + + ++ + V+ +
Sbjct: 156 LGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPS 215

Query: 291 IYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           I  +N+++N  A    D +  L ++  M+  G+ AD+ +YN LL AC   G   L  E  
Sbjct: 216 ILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQADIVTYNTLLSACARRG---LGDEAE 272

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
              + +   G+L  D+ TYS +V+ F      +   ++ ++M S G  P+  +++ L+ A
Sbjct: 273 MVFRTMNEGGILP-DITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEA 331

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
            A +G +++AM +F +M  AGC PN+   +ILL       ++D    LF    +S T+  
Sbjct: 332 HAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTE-- 389

Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
                                                        P   TYNIL+     
Sbjct: 390 ---------------------------------------------PNAATYNILINVFGE 404

Query: 528 DYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             Y   V  L ++M    + PN  ++  LI ACG  G  E A
Sbjct: 405 GGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDA 446



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 162/376 (43%), Gaps = 34/376 (9%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
           F   +  +G+     S+L   D  KK   SP++    T+I+ C   G D+ +   ++  +
Sbjct: 184 FTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQM 243

Query: 283 RSQNVTLNIYVFNSLMNVNA-HDLKFTLE-VYKNMQKLGVMADMASYNILLKACCLAGNT 340
           R + +  +I  +N+L++  A   L    E V++ M + G++ D+ +Y+ L++     G  
Sbjct: 244 RHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETF---GKL 300

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
              +++   +K +E+ G    D+ +Y+ +++  A +   + A+ V   M  AG  PN  T
Sbjct: 301 NRLEKVSELLKEMESGGSFP-DITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAAT 359

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +S L+N     G  +    LF EM  +  EPN+   NIL+    E   F     LF    
Sbjct: 360 YSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMV 419

Query: 461 LSKTQVALGEDYDGNTDRISNME-HKDKQSI---TNTPNFVPNSH-YSSFDKRF------ 509
               +  + E Y+G          H+D + I    N    VP+S  Y+   + +      
Sbjct: 420 EENVEPNM-ETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALY 478

Query: 510 -------------SFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTIL 554
                          KPT  TYN L++       Y   +A++ +M   G++ N  ++  +
Sbjct: 479 EEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGV 538

Query: 555 IDACGGSGNVEGALQC 570
           I+A    G  E A++ 
Sbjct: 539 IEAFRQGGQFEEAIKA 554



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 140/344 (40%), Gaps = 55/344 (15%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           F    +EF ++ D   +LR +   ++ +   PN +I   +I V G  G   K + I++++
Sbjct: 113 FALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEM 172

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            S  V  +++ F +L+N    + ++  +LE+   M+K  V   + +YN ++ +C   G  
Sbjct: 173 PSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGG-- 230

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
           +  +E+ G    +  +G+ + D+ TY+T++   A       A  V   M   G+ P+  T
Sbjct: 231 LDWEELLGLFAQMRHEGI-QADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITT 289

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +S L+        +E+   L +EM   G  P+    N+LL+A  ++     A  +FR   
Sbjct: 290 YSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQ-- 347

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
                                               VPN+                TY+I
Sbjct: 348 ------------------------------MQGAGCVPNA---------------ATYSI 362

Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
           L+        Y  V+ L  EM+     PN  ++ ILI+  G  G
Sbjct: 363 LLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGG 406



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 6/205 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           PN      ++++ G  G Y   R ++ +++  N   N   +N L+NV       K  + +
Sbjct: 355 PNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTL 414

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           + +M +  V  +M +Y  L+ AC   G    A++I   + H+  KGV+      Y+ +++
Sbjct: 415 FHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKI---LLHMNEKGVVPSSK-AYTGVIE 470

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +  A  ++ AL     M   G  P   T++SLI   A  GL +++  +  +M Q+G   
Sbjct: 471 AYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVAR 530

Query: 432 NSQCCNILLQACVEACQFDRAFRLF 456
           N    N +++A  +  QF+ A + +
Sbjct: 531 NRDTFNGVIEAFRQGGQFEEAIKAY 555



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 14/251 (5%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           +VP +   +   +  +G+      AL A++   +  S P +    ++I +    G Y +S
Sbjct: 458 VVPSSKA-YTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKES 516

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKA 333
            AI   +    V  N   FN ++       +F   ++ Y  M+K     D  +   +L  
Sbjct: 517 EAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSV 576

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C AG    ++E +GE+K L   G+L   V  Y  ++ V+A A  W  A ++ ++M +  
Sbjct: 577 YCFAGLVEESEEQFGEIKAL---GILP-SVMCYCMMLAVYAKADRWDDAHQLLDEMFTNR 632

Query: 394 VTPNTITWSSLINAC----ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
           V+        +I       +N  +VE   ++FE++   GC    +  N LL+A     Q 
Sbjct: 633 VSNIHQVIGQMIRGDYDDDSNWQMVE---YVFEKLKSEGCSLGVRFYNTLLEALWWLGQK 689

Query: 450 DRAFRLFRSWT 460
           +RA R+    T
Sbjct: 690 ERATRVLNEAT 700



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 124/285 (43%), Gaps = 14/285 (4%)

Query: 206 DVNLAIRYACIVPRADI--LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263
           D+ L ++ +   P A    +  N   E G  +++V+    +D  ++++  PNM     +I
Sbjct: 378 DLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLF--HDMVEENVE-PNMETYEGLI 434

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVM 321
             CG  G +  ++ I   +  + V  +   +  ++        +   L  +  M ++G  
Sbjct: 435 FACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSK 494

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
             + +YN L++     G   L +E    +  +   GV + +  T++ +++ F     ++ 
Sbjct: 495 PTVETYNSLIQMFAKGG---LYKESEAILLKMGQSGVAR-NRDTFNGVIEAFRQGGQFEE 550

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A+K   +M  A   P+  T  ++++    AGLVE++   F E+   G  P+  C  ++L 
Sbjct: 551 AIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLA 610

Query: 442 ACVEACQFDRAFRLFRSW---TLSKTQVALGEDYDGNTDRISNME 483
              +A ++D A +L        +S     +G+   G+ D  SN +
Sbjct: 611 VYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGDYDDDSNWQ 655


>gi|298712182|emb|CBJ33054.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 903

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 154/376 (40%), Gaps = 46/376 (12%)

Query: 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284
           C    ++G+    +S LR  D  K+ +  P +    T+I  CG CG+  ++ A+  ++  
Sbjct: 467 CEVGEQWGRA---LSLLR--DMPKRGVK-PVVISYNTVISACGKCGEGDQALALLREMPE 520

Query: 285 QNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + +  ++  FNS +    N+      + + + M + GV AD  +Y+  L     AG    
Sbjct: 521 RGLMPDVITFNSAIAALSNSGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGRWEQ 580

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A  +   ++ ++  GV    V  Y+  ++   +A     AL +  +M +AGVTPN  ++S
Sbjct: 581 ALSL---LREMQGAGV-SPTVICYTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSYS 636

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           + I+AC   G  EQ + L  EM   G  PN  C    +  C    Q++RA   FRS   S
Sbjct: 637 ATISACGKDGRWEQGLALLNEMPALGLTPNEFCYTAAITGCGIGGQWERAVATFRSMIAS 696

Query: 463 KTQVALGEDYDGNTDRISNMEHKDK--------QSITNTPNFVPN--------------- 499
             Q  +     G T  +S + H  +          +       PN               
Sbjct: 697 GIQPTV----VGYTSAVSALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGG 752

Query: 500 -SHYSSFDKR----FSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWT 552
             H  +  +R        P  T Y   ++A   C ++    +L+ EM   G+ P    + 
Sbjct: 753 QGHLVAQVQRDMASAGITPRLTGYLSAIRASGECGNWSEATSLLGEMEAAGVPPTVSCYN 812

Query: 553 ILIDACGGSGNVEGAL 568
             I ACG SG  + AL
Sbjct: 813 AAITACGKSGKWQEAL 828



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 141/325 (43%), Gaps = 13/325 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           PN    +  I VCG CG   ++ ++  +++   V L   V++++ N        +     
Sbjct: 228 PNHITYQAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAAST 287

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + +    V  ++ +YN+ +  C   G     +E    +  +   G ++ DV TY+ +V 
Sbjct: 288 LREIHDWPVKPNVFNYNLAICTCTDCGEW---EEALDLLHFMREVGGVEPDVVTYNIVVA 344

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               A   + A+++  +M   G+ P+ I++++ I+AC + GL E+A+ +F EM +AG  P
Sbjct: 345 ACGKAGQGEKAIEIFREMSEVGIKPDVISFTTAISACGSCGLSEEALSIFREMERAGVRP 404

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           N    N ++ AC+ A Q++ A   F            G       D +   +     +  
Sbjct: 405 NIITHNAVMSACIAAGQWEEALDFFTEVVDGSGAANGGGGGGPPPDPVEVADACSYNTAL 464

Query: 492 NTPNFVPN-----SHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGL 544
           +            S      KR   KP   +YN ++ AC  C +  +  AL+ EM   GL
Sbjct: 465 SACEVGEQWGRALSLLRDMPKR-GVKPVVISYNTVISACGKCGEGDQALALLREMPERGL 523

Query: 545 SPNHISWTILIDACGGSGNVEGALQ 569
            P+ I++   I A   SG  + A++
Sbjct: 524 MPDVITFNSAIAALSNSGRPDDAVR 548



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 151/372 (40%), Gaps = 51/372 (13%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I  C    E+ +  DL+  +R     +     P++     ++  CG  G   K+  I+ +
Sbjct: 307 ICTCTDCGEWEEALDLLHFMREVGGVE-----PDVVTYNIVVAACGKAGQGEKAIEIFRE 361

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    +  ++  F + ++   +    +  L +++ M++ GV  ++ ++N ++ AC  AG 
Sbjct: 362 MSEVGIKPDVISFTTAISACGSCGLSEEALSIFREMERAGVRPNIITHNAVMSACIAAGQ 421

Query: 340 TVLAQEIYGEV------------KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
              A + + EV                   V   D  +Y+T +      + W  AL +  
Sbjct: 422 WEEALDFFTEVVDGSGAANGGGGGGPPPDPVEVADACSYNTALSACEVGEQWGRALSLLR 481

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           DM   GV P  I+++++I+AC   G  +QA+ L  EM + G  P+    N  + A   + 
Sbjct: 482 DMPKRGVKPVVISYNTVISACGKCGEGDQALALLREMPERGLMPDVITFNSAIAALSNSG 541

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
           + D A RL R   + +  VA                     +IT +      +H   +++
Sbjct: 542 RPDDAVRLMRE--MPRAGVA-------------------ADAITYSSALTGLAHAGRWEQ 580

Query: 508 RFSF---------KPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILID 556
             S           PT   Y   ++AC       +A  L+ EM T G++PN  S++  I 
Sbjct: 581 ALSLLREMQGAGVSPTVICYTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSYSATIS 640

Query: 557 ACGGSGNVEGAL 568
           ACG  G  E  L
Sbjct: 641 ACGKDGRWEQGL 652



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 119/321 (37%), Gaps = 57/321 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN Y     +D CG  G   ++  +  D R+  + L++  +N  +   V   D +  L +
Sbjct: 157 PNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSM 216

Query: 312 YKNMQ-KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            + M+ + G+  +  +Y   +K C   G    A  +  E+K     G + L    YS + 
Sbjct: 217 IREMEAEYGIKPNHITYQAAIKVCGRCGKADEAASLLIEMKD----GGVPLKTSVYSAVF 272

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-AGC 429
             F     WQ A     ++    V PN   ++  I  C + G  E+A+ L   M +  G 
Sbjct: 273 NAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGV 332

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           EP+    NI++ AC +A Q ++A  +FR  +                             
Sbjct: 333 EPDVVTYNIVVAACGKAGQGEKAIEIFREMS----------------------------- 363

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPN 547
                                 KP   ++   + AC  C       ++  EM   G+ PN
Sbjct: 364 ------------------EVGIKPDVISFTTAISACGSCGLSEEALSIFREMERAGVRPN 405

Query: 548 HISWTILIDACGGSGNVEGAL 568
            I+   ++ AC  +G  E AL
Sbjct: 406 IITHNAVMSACIAAGQWEEAL 426



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 132/304 (43%), Gaps = 22/304 (7%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYN 328
           +  + RA   + ++    ++ +V++  ++  A   ++   L++   M +LG M +    N
Sbjct: 104 ELAEGRATTNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVN 163

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
             L AC  AG     QE  G ++   A G+ +LDV +Y+  +        W++AL +  +
Sbjct: 164 AALDACGKAGRV---QEALGLMRDARASGI-ELDVVSYNCAIPACVTGGDWELALSMIRE 219

Query: 389 MLSA-GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           M +  G+ PN IT+ + I  C   G  ++A  L  EM   G         + L+  V + 
Sbjct: 220 MEAEYGIKPNHITYQAAIKVCGRCGKADEAASLLIEMKDGG---------VPLKTSVYSA 270

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS-NMEHKDKQSITNTPNFVPNSHYSSFD 506
            F+ AFR    W  + + +    D+    +  + N+              +   H+    
Sbjct: 271 VFN-AFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHF--MR 327

Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           +    +P   TYNI++ AC       KA  +  EM  VG+ P+ IS+T  I ACG  G  
Sbjct: 328 EVGGVEPDVVTYNIVVAACGKAGQGEKAIEIFREMSEVGIKPDVISFTTAISACGSCGLS 387

Query: 565 EGAL 568
           E AL
Sbjct: 388 EEAL 391



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 5/206 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           +PN++     I  CG  G + +  A+  ++ +  +T N + + + +       ++   + 
Sbjct: 629 TPNLFSYSATISACGKDGRWEQGLALLNEMPALGLTPNEFCYTAAITGCGIGGQWERAVA 688

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            +++M   G+   +  Y   + A    G   LA E+  E+K  E  G+ + +  TY+ ++
Sbjct: 689 TFRSMIASGIQPTVVGYTSAVSALAHCGEVDLALELLSEMK--EEAGI-EPNEQTYAAVI 745

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
               +     +  +V+ DM SAG+TP    + S I A    G   +A  L  EM  AG  
Sbjct: 746 LACGNGGQGHLVAQVQRDMASAGITPRLTGYLSAIRASGECGNWSEATSLLGEMEAAGVP 805

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
           P   C N  + AC ++ ++  A  L 
Sbjct: 806 PTVSCYNAAITACGKSGKWQEALDLL 831



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 104/232 (44%), Gaps = 13/232 (5%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLE 310
           +PN +     I  CGI G + ++ A +  + +  +   +  + S ++  AH  ++   LE
Sbjct: 664 TPNEFCYTAAITGCGIGGQWERAVATFRSMIASGIQPTVVGYTSAVSALAHCGEVDLALE 723

Query: 311 VYKNM-QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +   M ++ G+  +  +Y  ++ AC   G   L  ++    + + + G+    +  Y + 
Sbjct: 724 LLSEMKEEAGIEPNEQTYAAVILACGNGGQGHLVAQVQ---RDMASAGITP-RLTGYLSA 779

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           ++   +   W  A  +  +M +AGV P    +++ I AC  +G  ++A+ L +EM   G 
Sbjct: 780 IRASGECGNWSEATSLLGEMEAAGVPPTVSCYNAAITACGKSGKWQEALDLLDEMPGKGL 839

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
             +S      L A + ACQ  +A R  ++  L +  + +  +  G  D +  
Sbjct: 840 VRDSG----TLSAAISACQ--KAGRGVKAAGLVEEMLEMAREKGGERDSLEG 885


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 150/307 (48%), Gaps = 32/307 (10%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           T ++V G  G   ++   + D++ Q +   +  F  ++N+   A+      +++++M+K 
Sbjct: 167 TYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKA 226

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
               ++ +Y  L+ A    GN V A+EI+ E   L++ G +  DV+TY+ +++ ++  + 
Sbjct: 227 LCPPNLYTYTALMNAHAREGNCVRAEEIFAE---LQSVGFIP-DVYTYNALLEAYSRGEH 282

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A +V + M+ AGV P+ ++++ LI+A   AGL   A  +++ M +AG +P  +   +
Sbjct: 283 PTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHML 342

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQV------ALGEDYDGNTDRISNMEHKDKQSITN 492
           LL +  +A +   A RL R    S  +       +L   Y GN+ RI  ME   +  +++
Sbjct: 343 LLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAY-GNSGRIDEMESLLESMVSS 401

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHIS 550
                              KP  +T N L+ A     Y  KA  + N + + GL+P+ +S
Sbjct: 402 VA-----------------KPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMS 444

Query: 551 WTILIDA 557
           WT L+ A
Sbjct: 445 WTSLMGA 451



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 115/228 (50%), Gaps = 12/228 (5%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K  DL  ++R      K L  PN+Y    +++     G+ +++  I+ +L+S     ++Y
Sbjct: 215 KADDLFRSMR------KALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVY 268

Query: 293 VFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +N+L+   +     T   EV++ M + GV  D  SYNIL+ A   AG T  AQ +Y  +
Sbjct: 269 TYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSM 328

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K    K  +K    ++  ++  +A A     A ++  ++ ++GV P+T  ++SL++A  N
Sbjct: 329 KEAGFKPTMK----SHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGN 384

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +G +++   L E M+ +  +P+    N L+ A  +    ++A  +F S
Sbjct: 385 SGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNS 432



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 95/255 (37%), Gaps = 54/255 (21%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE-AKGVLKLDVF----TYSTI 369
           M+    +    S+N+LL A         A++++ E+K    + G ++  +F    TY+T 
Sbjct: 109 MKDFQCLPTETSFNVLLAAYSRGVQLEKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTY 168

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           ++V   +     A     DM   G+ P   T++ +IN    A   ++A  LF  M +A C
Sbjct: 169 LEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALC 228

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            PN      L+ A        RA  +F                             + QS
Sbjct: 229 PPNLYTYTALMNAHAREGNCVRAEEIF----------------------------AELQS 260

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRV--KALMNEMRTVGLSPN 547
           +                    F P   TYN L++A     +    K +   M   G+ P+
Sbjct: 261 V-------------------GFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPD 301

Query: 548 HISWTILIDACGGSG 562
            +S+ ILIDA G +G
Sbjct: 302 QVSYNILIDAFGRAG 316


>gi|255586885|ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525928|gb|EEF28334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1129

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 128/310 (41%), Gaps = 57/310 (18%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTL 309
           PN++   ++ID C   G   K+   Y  LRS+NV  +  VFN+L+       A D  F +
Sbjct: 574 PNVHTYGSLIDGCAKAGQMAKAFGAYGILRSKNVKPDRVVFNALITACGQSGAVDRAFDV 633

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
                 +   +  D  +   L+KAC  AG    A+E+Y  +     KG  ++    Y+  
Sbjct: 634 LAEMGAETHPIDPDHITVGALMKACAKAGQVDRAKEVYNMLHKYNIKGTPEV----YTIA 689

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           V   +    W+ A  V +DM   GV P+ +  S+L++   +AGLV+ A    +E    G 
Sbjct: 690 VNFCSQTGDWEFARSVYDDMTRKGVAPDEMFLSALVDVAGHAGLVDIAFETLQEARTQGT 749

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +      + L+ AC  A  + +A  L+             ED                  
Sbjct: 750 QLGIVPYSSLMGACSNAKNWQKALELY-------------EDI----------------- 779

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPN 547
                            K    KPT +T N LM A C      KAL  ++EM++ GL PN
Sbjct: 780 -----------------KAIKLKPTVSTMNALMTALCDGDQLQKALETLSEMKSFGLCPN 822

Query: 548 HISWTILIDA 557
            ++++IL+ A
Sbjct: 823 IVTYSILLVA 832



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 115/268 (42%), Gaps = 42/268 (15%)

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           KL     ++++N+L+  C  + ++  A E+      L     LK D   Y+T++   A +
Sbjct: 499 KLVPNPSLSTFNMLMSVCSSSQDSDGAFEVL----RLAQGAGLKADCKLYTTLISTCAKS 554

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                  +V  +M++AGV PN  T+ SLI+ CA AG + +A   +  +     +P+    
Sbjct: 555 GKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAKAFGAYGILRSKNVKPDRVVF 614

Query: 437 NILLQACVEACQFDRAFRLF-----RSWTLSKTQVALGE-----DYDGNTDR---ISNME 483
           N L+ AC ++   DRAF +       +  +    + +G         G  DR   + NM 
Sbjct: 615 NALITACGQSGAVDRAFDVLAEMGAETHPIDPDHITVGALMKACAKAGQVDRAKEVYNML 674

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRT 541
           HK                       ++ K T   Y I +  C    D+   +++ ++M  
Sbjct: 675 HK-----------------------YNIKGTPEVYTIAVNFCSQTGDWEFARSVYDDMTR 711

Query: 542 VGLSPNHISWTILIDACGGSGNVEGALQ 569
            G++P+ +  + L+D  G +G V+ A +
Sbjct: 712 KGVAPDEMFLSALVDVAGHAGLVDIAFE 739



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 11/208 (5%)

Query: 242 RAYD-----ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           RA+D      ++ H   P+      ++  C   G   +++ +Y  L   N+     V+  
Sbjct: 629 RAFDVLAEMGAETHPIDPDHITVGALMKACAKAGQVDRAKEVYNMLHKYNIKGTPEVYTI 688

Query: 297 LMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
            +N      D +F   VY +M + GV  D    + L+     AG   +A E   E +   
Sbjct: 689 AVNFCSQTGDWEFARSVYDDMTRKGVAPDEMFLSALVDVAGHAGLVDIAFETLQEAR--- 745

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            +G  +L +  YS+++   ++AK WQ AL++ ED+ +  + P   T ++L+ A  +   +
Sbjct: 746 TQGT-QLGIVPYSSLMGACSNAKNWQKALELYEDIKAIKLKPTVSTMNALMTALCDGDQL 804

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           ++A+    EM   G  PN    +ILL A
Sbjct: 805 QKALETLSEMKSFGLCPNIVTYSILLVA 832


>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 675

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 148/353 (41%), Gaps = 56/353 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY-ED 281
           LF + +  F +     +AL    +++    +P       +I   G  G   ++ A++ E 
Sbjct: 237 LFSDLISAFARAALPDAALDLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEF 296

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
             +  +      +N+L+   V    LK   +V   M   GV  D A+Y++L+ A   AG 
Sbjct: 297 FLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGR 356

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ +   +K +EA GV K   + +S I+  F D   WQ A  V  +M ++GV P+  
Sbjct: 357 WESARIL---LKEMEADGV-KPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRH 412

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++ +I+       +  AM  F  M + G EP+    N L+ A  +  + DRA  LF   
Sbjct: 413 FYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELF--- 469

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                     ++   +N P                  P TTTYN
Sbjct: 470 --------------------------EEMRESNCP------------------PGTTTYN 485

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           I++        +  V+ +++EM+  GL PN I++T L+D  G SG  + A++C
Sbjct: 486 IMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIEC 538



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/311 (20%), Positives = 132/311 (42%), Gaps = 26/311 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P+ Y+   I+      GD+ K+ A+  ++ +  V  + + +N +++       L   ++ 
Sbjct: 374 PSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDA 433

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M++ G+  D+ ++N L+ A    G    A E++ E++             TY+ ++ 
Sbjct: 434 FNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPP----GTTTYNIMIN 489

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +  + + W     +  +M   G+ PN IT+++L++    +G  ++A+   E M   G +P
Sbjct: 490 LLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKP 549

Query: 432 NSQCCNILLQACVEACQFDRAF---RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           +    + L+ A  +    D A    +  R+  L  + V L        + + N   +D++
Sbjct: 550 SPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVL--------NSLMNAFGEDRR 601

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSP 546
            +              F K    +P   TY  LMKA      + +V  +  EM T G +P
Sbjct: 602 VVEAFSVL-------QFMKENDLRPDVITYTTLMKALIRIEQFDKVPVIYEEMITSGCAP 654

Query: 547 NHISWTILIDA 557
           +  +  +L  A
Sbjct: 655 DRKARAMLRSA 665


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 169/382 (44%), Gaps = 52/382 (13%)

Query: 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALR--AYDASKKHLSSPNMYICRTIID 264
           VN    + C+    D +  N + +   KR L+   R    D   K LS PN +    +  
Sbjct: 236 VNKMSEFGCV---PDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLS-PNKHTYNML-- 289

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGV 320
           VCG C  G   ++  + E +   N+   ++ +N L+N   +D K      +   M+K+ V
Sbjct: 290 VCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNV 349

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
           + D+ +YN L+  C    +   + E+Y  ++ ++ KGV K +  TY+ I+K         
Sbjct: 350 LPDVVTYNTLIDGCSQWRD---SSEVYSLIEEMDKKGV-KCNAVTYNIILKWMCKKGNMT 405

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A    + M   G++P+ +T+++LI A   AG + +A  + +EM   G + ++   N +L
Sbjct: 406 EATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTIL 465

Query: 441 QA-CVEACQFDRAFRLF-----RSWTLSKTQ---VALGEDYDGNTDRISNM--EHKDKQS 489
              CVE  + D A+ L      R + L +     + LG   D   DR  N+  E K++Q 
Sbjct: 466 HCLCVEK-KLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQI 524

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPN 547
           +                      P+T TYN ++   C      +A+  +NEM   GL P+
Sbjct: 525 M----------------------PSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPD 562

Query: 548 HISWTILIDACGGSGNVEGALQ 569
             ++ I+I      GNVE A Q
Sbjct: 563 ETTYNIIIHGFCLEGNVEKAFQ 584



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 96/521 (18%), Positives = 203/521 (38%), Gaps = 102/521 (19%)

Query: 52  VHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASML 111
           +  ++  LL    + LS     Y  +     + G L+E   ++E  +++  N+    ++ 
Sbjct: 264 LQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIE--IMTRNNL--LPTVW 319

Query: 112 SLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEV 171
           +  M+ +G      +G+ID    +  ++ ++ V P    D   +  L + C +  DS EV
Sbjct: 320 TYNMLVNGFC---NDGKIDEAFRIRDEMEKMNVLP----DVVTYNTLIDGCSQWRDSSEV 372

Query: 172 EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231
              +             +E+D++     +  N    N+ +++ C                
Sbjct: 373 YSLI-------------EEMDKK----GVKCNAVTYNIILKWMC---------------- 399

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
            KK ++  A    D  +++  SP+     T+I      G   K+  + +++ S+ + ++ 
Sbjct: 400 -KKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDT 458

Query: 292 YVFNSLMNVNAHDLKFTLEVYK---NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           +  N++++    + K   E Y    +  K G + D  SY IL+           A  ++ 
Sbjct: 459 WTLNTILHCLCVEKKLD-EAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWD 517

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E+K  +    +     TY++++     ++    A+    +ML  G+ P+  T++ +I+  
Sbjct: 518 EMKERQ----IMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGF 573

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468
              G VE+A     EM++   +P+   CNILL+        ++A +LF       T V+ 
Sbjct: 574 CLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFN------TLVSK 627

Query: 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
           G+D D                                           TYN ++ + C +
Sbjct: 628 GKDID-----------------------------------------VVTYNTIISSLCKE 646

Query: 529 --YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             +     L+ EM    L P+  ++ ++I A   +G ++ A
Sbjct: 647 GKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEA 687



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 130/299 (43%), Gaps = 23/299 (7%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           I+  ++  N   N+   N+LMN      ++  +    +V K+  KLGV+ +  S+NIL+ 
Sbjct: 162 IFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIY 221

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             CL       ++    V  +   G +  D  +Y+TI+      +  Q A  +  DM S 
Sbjct: 222 GYCLESK---VKDALDWVNKMSEFGCVP-DTVSYNTILDALLKRRLLQEARDLLLDMKSK 277

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G++PN  T++ L+      GL+++A  + E M +    P     N+L+       + D A
Sbjct: 278 GLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEA 337

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
           FR+     + K  V L +    NT      + +D   +         S     DK+   K
Sbjct: 338 FRIRDE--MEKMNV-LPDVVTYNTLIDGCSQWRDSSEVY--------SLIEEMDKK-GVK 385

Query: 513 PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               TYNI++K  C      +A   +++M   GLSP+ +++  LI A   +G +  A +
Sbjct: 386 CNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFR 444



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 109/236 (46%), Gaps = 14/236 (5%)

Query: 263 IDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           I + G   D    RA+  +++++ + +  +   +NS++     +  +   ++    M + 
Sbjct: 498 ILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLEN 557

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G++ D  +YNI++   CL GN   A + + E+     + + K DV+T + +++       
Sbjct: 558 GLVPDETTYNIIIHGFCLEGNVEKAFQFHNEM----IENLFKPDVYTCNILLRGLCREGM 613

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            + ALK+   ++S G   + +T++++I++    G  E A  L  EM      P+     +
Sbjct: 614 LEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKV 673

Query: 439 LLQACVEACQFDRA----FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           ++ A  +A +   A     ++  S  +    + LG+  +  T  +S  EH D +SI
Sbjct: 674 IIAALTDAGRIKEAEEFTLKMVESGIVHDQNLKLGKGQNVLTSEVS--EHFDFKSI 727


>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
 gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
          Length = 668

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 149/353 (42%), Gaps = 56/353 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY-ED 281
           LF + +  F +     +AL    +++    +P       +I   G  G   ++ A++ E 
Sbjct: 230 LFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGSAGRVAEAEALFLEF 289

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
             +  +      +N+L+   V    LK   +V   M + GV  D A+Y++L+ A   AG 
Sbjct: 290 FLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGR 349

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ +   +K +EA GV K   + +S I+  F D   WQ A  V  +M ++GV P+  
Sbjct: 350 WESARIL---LKEMEADGV-KPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRH 405

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++ +I+       +  AM  F+ M +   EP+    N L+ A  +  + DRA  LF   
Sbjct: 406 FYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELF--- 462

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                     ++   +N P                  P TTTYN
Sbjct: 463 --------------------------EEMRESNCP------------------PGTTTYN 478

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           I++        +  V+A+++EM+  GL PN I++T L+D  G SG  + A+ C
Sbjct: 479 IMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDC 531



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/308 (19%), Positives = 134/308 (43%), Gaps = 20/308 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P+ Y+   I+      GD+ K+ A+  ++++  V  + + +N +++       L   ++ 
Sbjct: 367 PSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDA 426

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M++  +  D+ ++N L+ A C  G    A E++ E++             TY+ ++ 
Sbjct: 427 FDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPP----GTTTYNIMIN 482

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +  + + W+    +  +M   G+ PN IT+++L++    +G  ++A+   E M   G +P
Sbjct: 483 LLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKP 542

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    + L+ A  +    D A  + ++      +V++        + + N   +D++ + 
Sbjct: 543 SPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSI-----LVLNSLINAFGEDRRVVE 597

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHI 549
                        F K    +P   TY  LMKA      + +V  +  EM T G +P+  
Sbjct: 598 AFSVL-------QFMKENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRK 650

Query: 550 SWTILIDA 557
           +  +L  A
Sbjct: 651 ARAMLRSA 658


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 120/274 (43%), Gaps = 23/274 (8%)

Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
            A  +K   E +K M K G   ++  YN+LL   C +G    A  ++ E+K         
Sbjct: 162 QAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSP--- 218

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            DV TY+T++     A+  +   K+ E M +AG  PN IT+S+LI+     G +E+A+ +
Sbjct: 219 -DVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEV 277

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTD 477
           F  ML+AGC+PN      L+     A +  +A  LF   T   +    VA      G   
Sbjct: 278 FGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCK 337

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKAL 535
           R  +M+  +K              Y         +PT  T+N L+   C      R   L
Sbjct: 338 R-GSMDEAEKL-------------YREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANEL 383

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           + EM T GL+ +  ++ ILI     +  ++ AL+
Sbjct: 384 VAEMGTKGLAADSCTYRILIAGLSRATKLDEALE 417



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 125/307 (40%), Gaps = 69/307 (22%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +S  + E++ +     +++ FN +M     +++++   EVY++M + G   D  SY+IL+
Sbjct: 28  ESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILI 87

Query: 332 KACCLAGN-----TVLAQEIY-GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
                 G       +L++ +  G+   ++A          YS++V+  A A+    A  +
Sbjct: 88  HGLAKIGKLDESLKILSEMVMRGQTPSMQA----------YSSLVRALAKARRVDHASSL 137

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            ++M+  G  P+ + +  LI     AG V+ A   F++M + GC+PN    N+LL     
Sbjct: 138 FDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCS 197

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
           + Q ++A  LF                                                 
Sbjct: 198 SGQLEQANTLFAEM---------------------------------------------- 211

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSG 562
            K  S  P   TYN L+ A C    RV+    L   MR  G  PN I+++ LI     +G
Sbjct: 212 -KSHSCSPDVVTYNTLLDAVCKA-RRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTG 269

Query: 563 NVEGALQ 569
            +E AL+
Sbjct: 270 ELEKALE 276



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 113/230 (49%), Gaps = 17/230 (7%)

Query: 237 LVSALRAYDASK------KHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVT 288
           L  A +  DAS+      KH   PN+ +   ++   G+C  G   ++  ++ +++S + +
Sbjct: 160 LCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLH--GLCSSGQLEQANTLFAEMKSHSCS 217

Query: 289 LNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
            ++  +N+L++    A  ++   ++++ M+  G + ++ +++ L+   C  G    A E+
Sbjct: 218 PDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEV 277

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
           +G +  LEA    K + +TY+T++     A+    A ++ E M  A + P+ + ++SLI 
Sbjct: 278 FGSM--LEAG--CKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIA 333

Query: 407 ACANAGLVEQAMHLFEEML-QAGCEPNSQCCNILLQACVEACQFDRAFRL 455
                G +++A  L+ EM   AG +P     N L+    +  +  RA  L
Sbjct: 334 GYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANEL 383



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 100/231 (43%), Gaps = 29/231 (12%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +VFTYS+I+K        + + KV E+M++AG  P+   ++ ++   A +  +E+A  ++
Sbjct: 9   NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 68

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
           + M+++G +P++   +IL+    +  + D + ++  S  + + Q    + Y      ++ 
Sbjct: 69  QHMVESGYKPDNVSYHILIHGLAKIGKLDESLKIL-SEMVMRGQTPSMQAYSSLVRALAK 127

Query: 482 MEHKDKQSITNTPNFVPNSHY-------------------SSFDKRF------SFKPTTT 516
               D  S +     +   H+                       +RF        +P   
Sbjct: 128 ARRVDHAS-SLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVP 186

Query: 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            YN+L+   C+     +   L  EM++   SP+ +++  L+DA   +  VE
Sbjct: 187 VYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVE 237



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 108/252 (42%), Gaps = 12/252 (4%)

Query: 210 AIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269
           A+R A  VP   I F   +    +  +L  AL  + +  +    PN Y   T+I   G+C
Sbjct: 245 AMRAAGYVPNV-ITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIS--GLC 301

Query: 270 --GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQK-LGVMADM 324
                +++R ++E +    +  +   +NSL+        +    ++Y+ M    G+   +
Sbjct: 302 RAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTI 361

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            ++N L+   C  G    A E+  E   +  KG L  D  TY  ++   + A     AL+
Sbjct: 362 VTFNTLIDGFCKLGKLGRANELVAE---MGTKG-LAADSCTYRILIAGLSRATKLDEALE 417

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           V + M       + ++  S +      G ++QA  +FE   ++G  PN +   IL ++ +
Sbjct: 418 VYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLI 477

Query: 445 EACQFDRAFRLF 456
           +  + + A +L 
Sbjct: 478 KLGRVEDAQKLM 489


>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
 gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
          Length = 661

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 149/353 (42%), Gaps = 56/353 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY-ED 281
           LF + +  F + R   +AL    +++    +P       +I   G      ++ A++ E 
Sbjct: 223 LFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEF 282

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
             +  +      +N+L+   V    LK   +V   M + GV  D A+Y++L+ A   AG 
Sbjct: 283 FLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGR 342

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ +   +K +EA GV K   + +S I+  F D   WQ A  V  +M ++GV P+  
Sbjct: 343 WESARIL---LKEMEADGV-KPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRH 398

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++ +I+       +  AM  F+ M + G EP+    N L+ A  +  + DRA  LF   
Sbjct: 399 FYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELF--- 455

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                     D+   +N P                    TTTYN
Sbjct: 456 --------------------------DEMRESNCPL------------------GTTTYN 471

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           I++     +  +  V+A++ EM+  GL PN I++T L+D  G SG  + A+ C
Sbjct: 472 IMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDC 524



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 138/311 (44%), Gaps = 26/311 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P+ Y+   I+      G++ K+ A+  ++ +  V  + + +N +++       L   ++ 
Sbjct: 360 PSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDA 419

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M++ G+  D+ ++N L+ A C  G    A E++ E++    +    L   TY+ ++ 
Sbjct: 420 FDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMR----ESNCPLGTTTYNIMIN 475

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +  + + W+    +  +M   G+ PN IT+++L++    +G  ++A+   E M   G +P
Sbjct: 476 LLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKP 535

Query: 432 NSQCCNILLQACVEACQFDRAF---RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           +    + L+ A  +    D A    +  R+  L  + V L        + + N   +D++
Sbjct: 536 SPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVL--------NSLINAFGEDRR 587

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSP 546
            I    + +       F K    +P   TY  LMKA      + +V  +  EM T G +P
Sbjct: 588 -IAEAFSVL------QFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAP 640

Query: 547 NHISWTILIDA 557
           +  +  +L  A
Sbjct: 641 DRKARAMLRSA 651


>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
          Length = 661

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 149/353 (42%), Gaps = 56/353 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY-ED 281
           LF + +  F + R   +AL    +++    +P       +I   G      ++ A++ E 
Sbjct: 223 LFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEF 282

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
             +  +      +N+L+   V    LK   +V   M + GV  D A+Y++L+ A   AG 
Sbjct: 283 FLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGR 342

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ +   +K +EA GV K   + +S I+  F D   WQ A  V  +M ++GV P+  
Sbjct: 343 WESARIL---LKEMEADGV-KPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRH 398

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++ +I+       +  AM  F+ M + G EP+    N L+ A  +  + DRA  LF   
Sbjct: 399 FYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELF--- 455

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                     D+   +N P                    TTTYN
Sbjct: 456 --------------------------DEMRESNCPL------------------GTTTYN 471

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           I++     +  +  V+A++ EM+  GL PN I++T L+D  G SG  + A+ C
Sbjct: 472 IMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDC 524



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 138/311 (44%), Gaps = 26/311 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P+ Y+   I+      G++ K+ A+  ++ +  V  + + +N +++       L   ++ 
Sbjct: 360 PSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDA 419

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M++ G+  D+ ++N L+ A C  G    A E++ E++    +    L   TY+ ++ 
Sbjct: 420 FDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMR----ESNCPLGTTTYNIMIN 475

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +  + + W+    +  +M   G+ PN IT+++L++    +G  ++A+   E M   G +P
Sbjct: 476 LLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKP 535

Query: 432 NSQCCNILLQACVEACQFDRAF---RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           +    + L+ A  +    D A    +  R+  L  + V L        + + N   +D++
Sbjct: 536 SPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVL--------NSLINAFGEDRR 587

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSP 546
            I    + +       F K    +P   TY  LMKA      + +V  +  EM T G +P
Sbjct: 588 -IAEAFSVL------QFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAP 640

Query: 547 NHISWTILIDA 557
           +  +  +L  A
Sbjct: 641 DRKARAMLRSA 651


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 159/352 (45%), Gaps = 34/352 (9%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL--N 290
           KK  ++ A +  +   +    P++  C T++   G+C  +  S+A    L+ Q +    N
Sbjct: 384 KKGKVIEANKLLEVVIQRGCIPDVVTCTTLVK--GLCMKHRISKATQLFLKMQKLGCMPN 441

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNM------QKLGVMADMASYNILLKACCLAGNTVL 342
           +    +LM     + ++K  LE++KNM        +    +  SY+I++   C  G    
Sbjct: 442 VVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDE 501

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A+E++ E+K L   GV+  DV +Y++++  F  +  W+ A  +  +M+  GV P+  T+S
Sbjct: 502 ARELFKEMKAL---GVIP-DVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFS 557

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSW 459
            LI+     G V +A  L E M+Q GC PN+     L++      +   A +LF   +  
Sbjct: 558 VLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKL 617

Query: 460 TLSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
                 V  G    G   T  I       K+ +++T  +  N           FKP   +
Sbjct: 618 GCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTN-----------FKPDVIS 666

Query: 518 YNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           Y+I++   C      +A  L  EM+ +G+ PN IS+T LI     SG +E A
Sbjct: 667 YSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDA 718



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 148/356 (41%), Gaps = 65/356 (18%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLG 319
           +ID+    G  +++  + E +  +   L+I  +++L+      H +     ++ +MQKLG
Sbjct: 197 LIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLG 256

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEV----------------------------- 350
              D  +Y  L+K  C  GN   A +++ E+                             
Sbjct: 257 CRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDR 316

Query: 351 ---------KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
                    K ++A+G++  DV +Y+T++  F  +  W+ A  +  +ML  G+ P+  T 
Sbjct: 317 REDEARELFKEMKAQGIMP-DVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTS 375

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-- 459
           S LI+     G V +A  L E ++Q GC P+   C  L++      +  +A +LF     
Sbjct: 376 SVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQK 435

Query: 460 ------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
                  ++   +  G    GN  +I+   HK+  S T        S Y       + KP
Sbjct: 436 LGCMPNVVTCATLMKGLCQSGNI-KIALELHKNMLSDT--------SPYG-----INCKP 481

Query: 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              +Y+I++   C        + L  EM+ +G+ P+ IS+T LI     SG  + A
Sbjct: 482 NAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDA 537



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 150/367 (40%), Gaps = 60/367 (16%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
            P++     +ID+    G  +++  + E +  +   L+I  +++L+      H +    +
Sbjct: 7   QPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQ 66

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV-------------------- 350
           ++ +M+KLG   D  +Y  L+K  C  G   +A  ++ E+                    
Sbjct: 67  LFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSI 126

Query: 351 ------------------KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
                             K ++A+G++  DV +Y++++  F  +  W+ A  +  +ML  
Sbjct: 127 IIDGLCKDRREDEARELFKEMKAQGMMP-DVISYTSLIHGFCRSGKWEKAKCLFNEMLDV 185

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G+  +  T S LI+     G V +A  L E M+Q GC  +    + L++      +   A
Sbjct: 186 GIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEA 245

Query: 453 FRLFRSWT---LSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
            RLF S          +A G    G   T  I+      ++ + +T  +           
Sbjct: 246 TRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRY----------- 294

Query: 508 RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
               KPT  +Y+I++   C D    +A  L  EM+  G+ P+ IS+T LI     SG  E
Sbjct: 295 GIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWE 354

Query: 566 GALQCRF 572
            A +C F
Sbjct: 355 KA-KCLF 360



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----LKLDVFT 365
           +++  MQKLG + D+ +Y  L+K  C  GN   A E++   K L   G      K DV +
Sbjct: 609 QLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHK--KMLSDTGQYGTNFKPDVIS 666

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           YS I+           A ++ ++M + GV PN I+++SLI+    +G +E A HLF EM+
Sbjct: 667 YSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMV 726

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAF 453
             G + N+   ++++    +  Q D+A 
Sbjct: 727 DQGVQLNAVTYSVMIHGFCKEGQIDKAL 754



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 19/191 (9%)

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           ML  G+ P+  T   LI+     G V +A  L E M+Q GC  +    + L++      +
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 449 FDRAFRLFRSWT---LSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPNSHYS 503
              A +LF S          +A G    G   T +I+   H  ++ + +T      S Y 
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDT------SQYG 114

Query: 504 SFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGS 561
                   KPT  +Y+I++   C D    +A  L  EM+  G+ P+ IS+T LI     S
Sbjct: 115 -----IKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRS 169

Query: 562 GNVEGALQCRF 572
           G  E A +C F
Sbjct: 170 GKWEKA-KCLF 179



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 116/263 (44%), Gaps = 30/263 (11%)

Query: 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY--ICRT 261
           KP+   AI Y+ I+       C   RE  + R+L   ++A       +S  ++    CR+
Sbjct: 480 KPN---AISYSIIIDG----LCKCGRE-DEARELFKEMKALGVIPDVISYTSLIHGFCRS 531

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLG 319
                   G +  ++ ++ ++    V  ++  F+ L+++   + K     E+ + M + G
Sbjct: 532 --------GKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRG 583

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
            + +  +Y  L+K  C+      A +++ +++ L   G L  DV TY T++K        
Sbjct: 584 CIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKL---GCLP-DVVTYGTLMKGLCQTGNI 639

Query: 380 QMALKVKEDMLS------AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           + AL++ + MLS          P+ I++S +I+     G  ++A  LF+EM   G  PN 
Sbjct: 640 KTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNV 699

Query: 434 QCCNILLQACVEACQFDRAFRLF 456
                L+     + + + A  LF
Sbjct: 700 ISYTSLIHGFCRSGKLEDAKHLF 722


>gi|168038568|ref|XP_001771772.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676903|gb|EDQ63380.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 614

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 154/348 (44%), Gaps = 35/348 (10%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           AL  Y+A K     P++    T+I  C        +  I  ++ +  V  ++  + +LM 
Sbjct: 203 ALSIYEAMKDAGVIPSVLTYNTLISCCQQAKRLEDAYRIKAEMEASGVKPDVVTYTALMA 262

Query: 300 V------------NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +             A  L+  L++Y+ MQ   +  D  +YN L+ A   A       EIY
Sbjct: 263 LVVKTGPYRGRSSPAQRLEKALQLYQEMQDRNIRPDSITYNTLMFAGAQAKVPEKVLEIY 322

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
              + + A GV   D FT+S I++  A     ++AL+V E+M +AGV P T T++ LI A
Sbjct: 323 ---RTMVAAGV-PPDQFTFSFILESAAAGGRLKVALEVFEEMRAAGVAPKTNTFNFLIEA 378

Query: 408 CANAGL--VEQAMHLFEEMLQ-AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
           CA+A     E+A  LFEEM    G  PN+Q  N L+ A  +     RA + +     S  
Sbjct: 379 CASAPYPDAEKAWALFEEMKTIEGVVPNAQTYNHLITASCKGGDNARALKAYELMWNSGY 438

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYNILM 522
           Q A+           +   +K  QS + T      S    + K     +KP   TY+ L+
Sbjct: 439 QRAV----------TTATFNKLIQSASQTEGL--ESALKMYRKMLDAGYKPDAITYSTLV 486

Query: 523 KAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            AC    D  +  ++  EM  +G+ PN +    LI A G +G  E A+
Sbjct: 487 VACNRADDLEQALSISQEMEGLGVKPNQVVQHSLIAAYGQAGQWEDAV 534



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 104/210 (49%), Gaps = 9/210 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLKFTL 309
           P+ +    I++     G    +  ++E++R+  V      FN L+   A     D +   
Sbjct: 332 PDQFTFSFILESAAAGGRLKVALEVFEEMRAAGVAPKTNTFNFLIEACASAPYPDAEKAW 391

Query: 310 EVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK-LDVFTYS 367
            +++ M+ + GV+ +  +YN L+ A C  G+   A + Y   + +   G  + +   T++
Sbjct: 392 ALFEEMKTIEGVVPNAQTYNHLITASCKGGDNARALKAY---ELMWNSGYQRAVTTATFN 448

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            +++  +  +  + ALK+   ML AG  P+ IT+S+L+ AC  A  +EQA+ + +EM   
Sbjct: 449 KLIQSASQTEGLESALKMYRKMLDAGYKPDAITYSTLVVACNRADDLEQALSISQEMEGL 508

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           G +PN    + L+ A  +A Q++ A   FR
Sbjct: 509 GVKPNQVVQHSLIAAYGQAGQWEDAVATFR 538



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 101/238 (42%), Gaps = 13/238 (5%)

Query: 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--D 271
           A  VP     F   +        L  AL  ++  +    +P       +I+ C      D
Sbjct: 327 AAGVPPDQFTFSFILESAAAGGRLKVALEVFEEMRAAGVAPKTNTFNFLIEACASAPYPD 386

Query: 272 YMKSRAIYEDLRS-QNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVM--ADMAS 326
             K+ A++E++++ + V  N   +N L+  +    D    L+ Y+ M   G       A+
Sbjct: 387 AEKAWALFEEMKTIEGVVPNAQTYNHLITASCKGGDNARALKAYELMWNSGYQRAVTTAT 446

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           +N L+++         A ++Y   K L+A    K D  TYST+V     A   + AL + 
Sbjct: 447 FNKLIQSASQTEGLESALKMY--RKMLDAG--YKPDAITYSTLVVACNRADDLEQALSIS 502

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQAC 443
           ++M   GV PN +   SLI A   AG  E A+  F  +LQ G E   S   +I+  AC
Sbjct: 503 QEMEGLGVKPNQVVQHSLIAAYGQAGQWEDAVATF-RVLQEGEEQLTSVSYSIIFDAC 559


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 146/344 (42%), Gaps = 49/344 (14%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVY 312
           N+     +I  C   G + ++ A+  +++   V  ++  ++S ++  A   ++   + + 
Sbjct: 325 NIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLL 384

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M   GV  +  SY I++ AC   G    A ++   ++ ++A GV   DV  YS  +  
Sbjct: 385 REMPMEGVTPNAISYGIVISACAKRGRWREAIDL---LQEMQAHGVPP-DVINYSAAIDA 440

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
            A A  W+ AL +  +M + G+TPN I+++S I+ACA  G  + A+ L  EM   G  P+
Sbjct: 441 CAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPD 500

Query: 433 SQCCNILLQACVEACQFDRAFRLFR------------SWTLSKTQVALGEDYDGNTDRIS 480
               + ++ +C    Q++ A  LFR            S   +    A G  ++   D + 
Sbjct: 501 VITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLG 560

Query: 481 NMEHKDKQSITNTPNFVPN--SHYSSFD------------------KRFSFKPTTTTYNI 520
            M          T   VP+  S+ ++ D                        P   +Y  
Sbjct: 561 EMP---------TMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRF 611

Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
            M AC  D  +     L+ +M  VGLSP+ +++   I+AC   G
Sbjct: 612 AMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGG 655



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 147/325 (45%), Gaps = 22/325 (6%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           +PN      +I  C   G + ++  + +++++  V  ++  +++ ++  A   ++   L 
Sbjct: 393 TPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALW 452

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + + M   G+  ++ SYN  + AC   G + +A E+   ++ + A G L  DV TYS ++
Sbjct: 453 LLREMPATGLTPNVISYNSAIDACAKTGRSKIAVEL---LREMPAHG-LAPDVITYSAVI 508

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
              A  + W+ AL +  +M   G+TP+ ++ ++ INACA  G  E+A+ +  EM   G  
Sbjct: 509 ASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLV 568

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSW-TLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           P++      + AC +  ++     L R   T+  T  A+   +  +   +  +    K++
Sbjct: 569 PDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLW---KEA 625

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPN 547
           +    + +               P   TYN  + AC     +     L+ +M T GL+P+
Sbjct: 626 LVLLRDMLA----------VGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPD 675

Query: 548 HISWTILIDACGGSGNVEGALQCRF 572
             S+   IDACG       A++  F
Sbjct: 676 VNSFNAAIDACGNGDQWGTAVEVLF 700



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 150/349 (42%), Gaps = 26/349 (7%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           +RE  +  D   AL   D  ++    P+     + I  CG    + ++  +   + ++  
Sbjct: 158 LREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGT 217

Query: 288 TLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             ++  ++S +   A     K  + + ++M+  GV  ++  Y+  + AC   G    A +
Sbjct: 218 PPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVD 277

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +   +K + A G L  DV TYST++   A    W+ A ++  +M + GV  N IT+S +I
Sbjct: 278 L---LKEMPAVG-LAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVI 333

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL---S 462
            ACA  G  E+A+ L  EM + G  P+    +  + AC +  Q++ A  L R   +   +
Sbjct: 334 GACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVT 393

Query: 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
              ++ G        R    E  D        + VP              P    Y+  +
Sbjct: 394 PNAISYGIVISACAKRGRWREAIDLLQEMQA-HGVP--------------PDVINYSAAI 438

Query: 523 KAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            AC   + + +   L+ EM   GL+PN IS+   IDAC  +G  + A++
Sbjct: 439 DACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVE 487


>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
          Length = 528

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 149/353 (42%), Gaps = 56/353 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY-ED 281
           LF + +  F + R   +AL    +++    +P       +I   G      ++ A++ E 
Sbjct: 90  LFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEF 149

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
             +  +      +N+L+   V    LK   +V   M + GV  D A+Y++L+ A   AG 
Sbjct: 150 FLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGR 209

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ +   +K +EA GV K   + +S I+  F D   WQ A  V  +M ++GV P+  
Sbjct: 210 WESARIL---LKEMEADGV-KPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRH 265

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++ +I+       +  AM  F+ M + G EP+    N L+ A  +  + DRA  LF   
Sbjct: 266 FYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELF--- 322

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                     D+   +N P                    TTTYN
Sbjct: 323 --------------------------DEMRESNCP------------------LGTTTYN 338

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           I++     +  +  V+A++ EM+  GL PN I++T L+D  G SG  + A+ C
Sbjct: 339 IMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDC 391



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 139/311 (44%), Gaps = 26/311 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P+ Y+   I+      G++ K+ A+  ++ +  V  + + +N +++     + L   ++ 
Sbjct: 227 PSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDA 286

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M++ G+  D+ ++N L+ A C  G    A E++ E++         L   TY+ ++ 
Sbjct: 287 FDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCP----LGTTTYNIMIN 342

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +  + + W+    +  +M   G+ PN IT+++L++    +G  ++A+   E M   G +P
Sbjct: 343 LLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKP 402

Query: 432 NSQCCNILLQACVEACQFDRAF---RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           +S   + L+ A  +    D A    +  R+  L  + V L        + + N   +D++
Sbjct: 403 SSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVL--------NSLINAFGEDRR 454

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSP 546
            I    + +       F K    +P   TY  LMKA      + +V  +  EM T G +P
Sbjct: 455 -IAEAFSVL------QFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAP 507

Query: 547 NHISWTILIDA 557
           +  +  +L  A
Sbjct: 508 DRKARAMLRSA 518


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 153/363 (42%), Gaps = 63/363 (17%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMK 274
           VP   + F   +    K  DL SA        K   +P++Y     +   G+C  G    
Sbjct: 275 VPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQ--GLCKAGRIQD 332

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLKFTLEVYKNMQKLGVMADMASYNIL 330
           +  ++E++R + V  N  VF +L  ++AH    ++   LE+++ M   G+  D+ +YN L
Sbjct: 333 AVEMFEEMRERGVNPNTVVFTTL--IDAHCKEGNVAAGLELHREMATRGIKTDLVAYNAL 390

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
               C   +   A +I  E+++      LK D  TY+T++  F       MA+++K++M 
Sbjct: 391 ANGLCRVRDLKAANDIVEEMRN----NGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMS 446

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
             GV  + +T+++LI+  + +G    +  +  EM++AG EP++    +++ A  +     
Sbjct: 447 DEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVK 506

Query: 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
             F+L +                        M++K +                       
Sbjct: 507 TGFKLLKE-----------------------MQNKGR----------------------- 520

Query: 511 FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            KP   TYN++M   C          L+N M  +G+ P+ I++ IL+D     G V  A 
Sbjct: 521 -KPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKVRDAE 579

Query: 569 QCR 571
           + +
Sbjct: 580 ELK 582


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 113/227 (49%), Gaps = 8/227 (3%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM- 298
           AL  Y+  ++  + PN+    T+IDV G  G + +   +   ++++ V   +  +N+L+ 
Sbjct: 264 ALDTYNHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLII 323

Query: 299 --NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
             N+     +  + VYK M   G   +  +YN L+ A   AG      E++ E+ H   K
Sbjct: 324 ACNMCGQP-REAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVH---K 379

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  +  V TYS+++     A  W++AL++  +M   G  PNT+T++SLI ACA     E+
Sbjct: 380 GCER-SVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEK 438

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           A  +FE+M + GC P+      L+ +  +  Q+ RA   +    L +
Sbjct: 439 ASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQR 485



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 12/239 (5%)

Query: 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           A I  C + ++  +  DL   +R  +  +      N++    +++VC  CG+   +   Y
Sbjct: 215 AMISMCIYQQDVDRAMDLAKEMRVRNIER------NVHTYTALMNVCIKCGNCPLALDTY 268

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
             +R      N+  +N+L++V       +  ++V   M+  GV   + +YN L+ AC + 
Sbjct: 269 NHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMC 328

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A  +Y   K +  +G    +  TY+ ++  +  A      ++V ++M+  G   +
Sbjct: 329 GQPREAMAVY---KRMLDEGY-SPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERS 384

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            IT+SSLI+AC  AG  E A+ LF EM   GC PN+   N L+ AC +  Q+++A  +F
Sbjct: 385 VITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVF 443



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 151/337 (44%), Gaps = 55/337 (16%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295
           ++   LR  DA+    S  ++Y    +I +C    D  ++  + +++R +N+  N++ + 
Sbjct: 190 EIFEWLRNLDANHPLASLCDVYTYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYT 249

Query: 296 SLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           +LMNV     +    L+ Y +M++ G   ++ +YN L+    + G   L ++    +  +
Sbjct: 250 ALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNTLID---VYGKMGLWEQGIKVLTLM 306

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
           + +GV  + + TY+T++         + A+ V + ML  G +PN  T+++LI+A   AG 
Sbjct: 307 KTEGVEPV-LRTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQ 365

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
           +++ M +F+EM+  GCE +    + L+ AC +A Q++ A  LF            GE   
Sbjct: 366 LDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELALELFNEMA--------GE--- 414

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYR 531
                                  +PN               T TYN L+ AC     + +
Sbjct: 415 ---------------------GCIPN---------------TVTYNSLITACAQGAQWEK 438

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
              +  +M+  G +P+ +++T LI +    G    AL
Sbjct: 439 ASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRAL 475



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 108/226 (47%), Gaps = 6/226 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  +GK       ++     K     P +    T+I  C +CG   ++ A+Y+ 
Sbjct: 281 VTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAMAVYKR 340

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +  + N   +N+L++    A  L   +EV++ M   G    + +Y+ L+ AC  AG 
Sbjct: 341 MLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQ 400

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             LA E++ E   +  +G +  +  TY++++   A    W+ A +V E M   G TP+ +
Sbjct: 401 WELALELFNE---MAGEGCIP-NTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVV 456

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
           T+++LI++    G   +A+  +E+M    C+P++   N ++    E
Sbjct: 457 TFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWE 502



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 113/252 (44%), Gaps = 18/252 (7%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK--LDVFTYSTIVKVFADAKWWQ 380
           D  +  +LLK    AG    A EI+  +++L+A   L    DV+TY+ ++ +    +   
Sbjct: 168 DSRATALLLKDLSKAGLGFRAVEIFEWLRNLDANHPLASLCDVYTYTAMISMCIYQQDVD 227

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A+ + ++M    +  N  T+++L+N C   G    A+  +  M Q G  PN    N L+
Sbjct: 228 RAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNTLI 287

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS-NMEHKDKQSITNTPNFVPN 499
               +   +++  ++    TL KT+         NT  I+ NM  + ++++         
Sbjct: 288 DVYGKMGLWEQGIKVL---TLMKTEGVEPVLRTYNTLIIACNMCGQPREAMA-------- 336

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
            +    D+ +S  P  TTYN L+ A        +V  +  EM   G   + I+++ LI A
Sbjct: 337 VYKRMLDEGYS--PNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISA 394

Query: 558 CGGSGNVEGALQ 569
           C  +G  E AL+
Sbjct: 395 CEKAGQWELALE 406


>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 146/353 (41%), Gaps = 56/353 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY-ED 281
           LF + +  F +     +AL    +++    +P       +I   GI G   ++ A++ E 
Sbjct: 235 LFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEALFLEF 294

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
             +  +      +N+L+   V    LK    V   M + GV  D A+Y++L+ A   AG 
Sbjct: 295 FLAGEIKPRTRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGR 354

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ +   +K +EA GV K   + +S I+  F D   WQ A  V  +M ++GV P+  
Sbjct: 355 WESARIL---LKEMEADGV-KPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRH 410

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++ +I+       +  AM +F  M   G EP+    N L+ A  +  + D A  LF+  
Sbjct: 411 FYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEM 470

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
             S                             N P                  P TTTYN
Sbjct: 471 RES-----------------------------NCP------------------PGTTTYN 483

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           I++        +  V+ +M+EM+  GL PN I++T L+D  G SG  + A+ C
Sbjct: 484 IMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDC 536



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 134/311 (43%), Gaps = 26/311 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P+ Y+   I+      GD+ K+ A+  ++ +  V  + + +N +++       L   ++V
Sbjct: 372 PSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDV 431

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M+  G+  D+ ++N L+ A C  G    A E++ E++             TY+ ++ 
Sbjct: 432 FNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPP----GTTTYNIMIN 487

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +  + + W     +  +M   G+ PN IT+++L++    +G  ++A+   E M   G +P
Sbjct: 488 LLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKP 547

Query: 432 NSQCCNILLQACVEACQFDRAF---RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           +    + L+ A  +    D A    +  R+  L  + V L        + + N   +D++
Sbjct: 548 SPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVL--------NSLINAFGEDRR 599

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSP 546
            +              F K   F+P   TY  LMKA      + +V  +  EM T G +P
Sbjct: 600 VVEAFSVL-------QFMKENDFRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAP 652

Query: 547 NHISWTILIDA 557
           +  +  +L  A
Sbjct: 653 DRKARAMLRSA 663


>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
          Length = 1131

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 6/204 (2%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVY 312
           N+    T+IDV G  G + ++ A+ E ++ + +      FN+LM     ++  +  L VY
Sbjct: 360 NVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVY 419

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M       +  +YN L+ A    G+     ++    K +  KG  +  V TYS+++  
Sbjct: 420 EQMAASSHPPNTTTYNALISAHSKGGDL---PKVLAVFKEMVQKGCER-SVITYSSLISA 475

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
              A  W++AL++ E+M   G  PN I+++SLI ACA     E+A  +FE+M + GC P+
Sbjct: 476 CEKAGEWKLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPD 535

Query: 433 SQCCNILLQACVEACQFDRAFRLF 456
                 L+QA     Q+ RA   F
Sbjct: 536 VVSYTALIQAYERGGQWRRALAAF 559



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 109/222 (49%), Gaps = 7/222 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  +GK      AL   +  K+    P      T++  C     + ++  +YE 
Sbjct: 362 VTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQ 421

Query: 282 LRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + + +   N   +N+L++ ++   DL   L V+K M + G    + +Y+ L+ AC  AG 
Sbjct: 422 MAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGE 481

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             LA +++ E++    +G +  +V +Y++++   A    W+ A +V E M   G  P+ +
Sbjct: 482 WKLALQLFEEMR---GEGCVP-NVISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPDVV 537

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCNILL 440
           ++++LI A    G   +A+  FEEM++A  C P+S   N ++
Sbjct: 538 SYTALIQAYERGGQWRRALAAFEEMIRARPCAPDSIVYNTII 579



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 131/319 (41%), Gaps = 90/319 (28%)

Query: 289 LNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           L+ + F S+++  V   DL   + + + M+  G+  ++ +++ L+  C   G   LA ++
Sbjct: 289 LDEFTFTSMISNCVAQQDLGRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDV 348

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFA-DAKW--------------------------- 378
           Y   + ++A G    +V TY+T++ V+    +W                           
Sbjct: 349 Y---RDMQAAGC-PANVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMI 404

Query: 379 -------WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                  WQ AL+V E M ++   PNT T+++LI+A +  G + + + +F+EM+Q GCE 
Sbjct: 405 ACNTSNQWQEALRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCER 464

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    + L+ AC +A ++  A +LF             E+  G                 
Sbjct: 465 SVITYSSLISACEKAGEWKLALQLF-------------EEMRGE---------------- 495

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHI 549
                VPN                 +YN L+ AC     + +   +  +M+  G  P+ +
Sbjct: 496 ---GCVPN---------------VISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPDVV 537

Query: 550 SWTILIDACGGSGNVEGAL 568
           S+T LI A    G    AL
Sbjct: 538 SYTALIQAYERGGQWRRAL 556



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 16/212 (7%)

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
           LD FT+++++      +    A+ + E+M   G+  N  T+S+L+N C   G  + A+ +
Sbjct: 289 LDEFTFTSMISNCVAQQDLGRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDV 348

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
           + +M  AGC  N    N L+    ++ Q++ A  +       + Q         NT  I+
Sbjct: 349 YRDMQAAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPV---TRTFNTLMIA 405

Query: 481 -NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMN 537
            N  ++ ++++        +SH           P TTTYN L+ A     D  +V A+  
Sbjct: 406 CNTSNQWQEALRVYEQMAASSH----------PPNTTTYNALISAHSKGGDLPKVLAVFK 455

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           EM   G   + I+++ LI AC  +G  + ALQ
Sbjct: 456 EMVQKGCERSVITYSSLISACEKAGEWKLALQ 487


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 166/365 (45%), Gaps = 35/365 (9%)

Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
           KR++  A   +    +   SPN++    +I      G+   +  +++ + ++    N+  
Sbjct: 183 KRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVT 242

Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L++       +    ++ ++M   G+  ++ SYN+++   C  G     +E+   + 
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRM---KEVSFVLT 299

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            +  +G   LD  TY+T++K +     +  AL +  +ML  G+TP+ IT++SLI++   A
Sbjct: 300 EMNRRGY-SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVAL 468
           G + +AM   ++M   G  PN +    L+    +    + A+R+ R       S + V  
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418

Query: 469 GEDYDGN------TDRISNMEHKDKQSITNTPNFVPNSH-YSSFDKRF------------ 509
               +G+       D I+ +E   ++ +  +P+ V  S   S F + +            
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGL--SPDVVSYSTVLSGFCRSYDVDEALRVKREM 476

Query: 510 ---SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
                KP T TY+ L++  C      +A  L  EM  VGL P+  ++T LI+A    G++
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDL 536

Query: 565 EGALQ 569
           E ALQ
Sbjct: 537 EKALQ 541



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 156/355 (43%), Gaps = 21/355 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I + + +    K  ++  A+   D  +     PN     T++D     G   ++  +  +
Sbjct: 346 ITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLRE 405

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLE----VYKNMQKLGVMADMASYNILLKACCLA 337
           +     + ++  +N+L  +N H +   +E    V ++M++ G+  D+ SY+ +L   C +
Sbjct: 406 MNDNGFSPSVVTYNAL--INGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRS 463

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            +   A  +  E   +  KG+ K D  TYS++++ F + +  + A  + E+ML  G+ P+
Sbjct: 464 YDVDEALRVKRE---MVEKGI-KPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             T+++LINA    G +E+A+ L  EM++ G  P+    ++L+    +  +   A RL  
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF------SF 511
                ++ V     Y    +  SN+E K   S+     F      +  D+ F      + 
Sbjct: 580 KLFYEES-VPSDVTYHTLIENCSNIEFKSVVSLIK--GFCMKGMMTEADQVFESMLGKNH 636

Query: 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           KP  T YNI++   C   D  +   L  EM   G   + ++   L+ A    G V
Sbjct: 637 KPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKV 691


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 149/352 (42%), Gaps = 56/352 (15%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R  +L CN  + +  K   +    + +D    H   P++Y    +I      G+   ++ 
Sbjct: 177 RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKR 236

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +  ++  +  + N+  +N ++     A  L   +E+ ++M   G++ D+ +Y+IL+   C
Sbjct: 237 VLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFC 296

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
           +   +  A+ +  E+  +     LK +  TY+ ++  F      + A ++K++M++ G+ 
Sbjct: 297 MEKRSREAKLMLLEMIDVG----LKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIE 352

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            N I W++L+N    AG +E+A+ + +EM++ G EP+SQ  ++L++         RAF L
Sbjct: 353 ANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFEL 412

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
                                                              K+    PT 
Sbjct: 413 LDEM-----------------------------------------------KKRKLAPTV 425

Query: 516 TTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            TY++++     C +     A++ EM   GL PN + +T L+ A    G VE
Sbjct: 426 LTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVE 477



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 170/369 (46%), Gaps = 40/369 (10%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRS 284
           F+  + K  ++  A R ++        PN+ I   +I+  G C  G+  ++ +++  + S
Sbjct: 536 FIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIE--GHCKEGNVTEAFSVFRFILS 593

Query: 285 QNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + V  ++  ++ L++  + + K      ++  +Q+ G++ +  +YN L+   C  GN   
Sbjct: 594 RRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDK 653

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A ++   ++ +  KG+   D+ TY+ ++     A   + A  + +D+   G+TPN +T++
Sbjct: 654 ASQL---LEEMCIKGI-NPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYA 709

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           ++++    +     A  L EEML  G  P++   N++L  C +  +F++A  LF+   L 
Sbjct: 710 AMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQE-MLE 768

Query: 463 K---TQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPN--SHYSSFD--------- 506
           K   + V+     +G   + ++    H  ++ I     F+PN  ++ S  D         
Sbjct: 769 KGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEK--QFIPNHVTYTSLIDHNCKAGMMG 826

Query: 507 --KRFSFK-------PTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILI 555
             KR   +       PT  TY  L+       +   V AL  EM   G+ P+ +++ ++I
Sbjct: 827 EAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMI 886

Query: 556 DACGGSGNV 564
           DA    GNV
Sbjct: 887 DAYCREGNV 895



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 145/349 (41%), Gaps = 36/349 (10%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           + +++  A    D  KK   +P +     II+    CG+   + AI  ++    +  N  
Sbjct: 402 RGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAV 461

Query: 293 VFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           V+ +LM  +A +  ++ +  + + M++ G++ D+  YN L+   C A     A+    E+
Sbjct: 462 VYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEM 521

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
             LE +  L+ +  TY   +  ++ A   ++A +   +MLS GV PN   +++LI     
Sbjct: 522 --LERR--LRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK 577

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLS 462
            G V +A  +F  +L      + Q  ++L+       +   AF +F             +
Sbjct: 578 EGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFT 637

Query: 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
              +  G    GN D+ S +   ++  I                      P   TYNIL+
Sbjct: 638 YNSLISGSCKQGNVDKASQL--LEEMCIK------------------GINPDIVTYNILI 677

Query: 523 KACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              C   +  R K L +++   GL+PN +++  ++D    S N   A Q
Sbjct: 678 DGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQ 726



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 144/359 (40%), Gaps = 68/359 (18%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL---------------- 297
           PN  +  T++      G   +SR I E +R Q +  +++ +NSL                
Sbjct: 458 PNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTY 517

Query: 298 --------MNVNAH-------------DLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
                   +  NAH             +++     +  M   GV+ ++  Y  L++  C 
Sbjct: 518 LMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK 577

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            GN   A  ++   + + ++ VL+ DV TYS ++   +       A  +  ++   G+ P
Sbjct: 578 EGNVTEAFSVF---RFILSRRVLQ-DVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLP 633

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N  T++SLI+     G V++A  L EEM   G  P+    NIL+    +A + +RA  LF
Sbjct: 634 NAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLF 693

Query: 457 -----RSWTLS-KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
                R  T +  T  A+ + Y  + +  +  +  ++  +   P                
Sbjct: 694 DDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVP---------------- 737

Query: 511 FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             P    YN+++  CC +    KA  L  EM   G +   +S+  LI+    SG ++ A
Sbjct: 738 --PDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFAST-VSFNTLIEGYCKSGKLQEA 793



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 105/227 (46%), Gaps = 17/227 (7%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLN 290
           K  ++  A   +D  +    +PN      ++D  G C     + A  + E++  + V  +
Sbjct: 682 KAGEIERAKNLFDDIEGRGLTPNCVTYAAMVD--GYCKSKNPTAAFQLLEEMLLRGVPPD 739

Query: 291 IYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            +++N ++N    + KF   L++++ M + G  A   S+N L++  C +G    A  +  
Sbjct: 740 AFIYNVILNFCCKEEKFEKALDLFQEMLEKG-FASTVSFNTLIEGYCKSGKLQEANHLLE 798

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E+  +E + +   +  TY++++     A     A ++  +M    V P   T++SL++  
Sbjct: 799 EM--IEKQFIP--NHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGY 854

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA------CVEACQF 449
            N G + +   LFEEM+  G EP+     +++ A       +EAC+ 
Sbjct: 855 HNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKL 901



 Score = 45.4 bits (106), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 16/229 (6%)

Query: 267  GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMA 322
            G C  G   ++  + E++  +    N   + SL+  N  A  +     ++  MQ+  VM 
Sbjct: 783  GYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMP 842

Query: 323  DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
               +Y  LL      GN     E+    + + AKG+ + D  TY  ++  +        A
Sbjct: 843  TAKTYTSLLHGYHNIGNM---SEVSALFEEMVAKGI-EPDKMTYYVMIDAYCREGNVMEA 898

Query: 383  LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
             K+K+++L  G+  +   + +LI A        + + L  E+ ++G       C+++ + 
Sbjct: 899  CKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARG 958

Query: 443  CVEACQFDRAFRLFRS-----WTLSKTQVALGEDYDGNTDRISNMEHKD 486
               A   D A  + RS     W  + T  +LG+  DGN +  +N E  D
Sbjct: 959  FQIAGNMDEAAEVLRSMVKFGWVSNTT--SLGDLVDGNQNG-ANSEDSD 1004


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 160/364 (43%), Gaps = 31/364 (8%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           F    REF ++ D   ALR +   ++H    PN ++   +I + G  G   K+  ++ED+
Sbjct: 41  FSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASELFEDM 100

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
              +V  N+Y F +L+N    + +   +L +   M++  V  ++ +YN ++ AC   G  
Sbjct: 101 PLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGG-- 158

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
           +  + + G    +  +G+ + D+ TY+T++   +     + A  V   M  AGV P++IT
Sbjct: 159 LEWEGLLGLFAQMRHEGI-QPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSIT 217

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW- 459
           +++L++    A   E    L  EM QAG  P+    NIL++A   A ++  A ++F+   
Sbjct: 218 YNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQ 277

Query: 460 ---------TLSKTQVALGED--YDGNTDRISNMEHKDKQSITNTPN-----FVPNSHYS 503
                    T S    A G+   YD      ++M+ +  +   NT N     F     + 
Sbjct: 278 EAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQ 337

Query: 504 SFDKRF------SFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILI 555
                F        +P  +TY  L+ +C     +   K +   M    ++P    +T LI
Sbjct: 338 ESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLI 397

Query: 556 DACG 559
            A G
Sbjct: 398 TAYG 401



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 105/238 (44%), Gaps = 33/238 (13%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P++    T++  C   G   ++  ++  +    V  +   +N+L+++   A   +   E+
Sbjct: 178 PDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGEL 237

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH-------------LEAKGV 358
            + M++ G   D+ +YNIL++A   AG    A +++ +++              LEA G 
Sbjct: 238 LREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGK 297

Query: 359 ------------------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
                              + DV TY+T+++VF    ++Q ++ +  D+L  GV P+  T
Sbjct: 298 HGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMST 357

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           ++ L+ +C   GL + A  +   MLQ+   P +     L+ A   A  +  A   F S
Sbjct: 358 YAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNS 415



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 31/215 (14%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL-VEQA 417
           ++ +V++++ ++  +      + +L +   M    VTPN IT++++INACA  GL  E  
Sbjct: 105 VEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGL 164

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL------SKTQVALGED 471
           + LF +M   G +P+    N LL AC      + A  +FR+         S T  AL + 
Sbjct: 165 LGLFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDI 224

Query: 472 YDGNTDRISNMEH--KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TD 528
           Y G  DR   +    ++ +   N P+ V                    YNIL++A     
Sbjct: 225 Y-GQADRHEGVGELLREMEQAGNAPDVV-------------------AYNILIEAYGRAG 264

Query: 529 YYRVKALM-NEMRTVGLSPNHISWTILIDACGGSG 562
            YR  A M  +M+  G +P+ ++++ L++A G  G
Sbjct: 265 KYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHG 299



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 94/193 (48%), Gaps = 6/193 (3%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAHDLKFTLE 310
           ++P++     +I+  G  G Y  +  +++ ++    T ++  F++L+     H     + 
Sbjct: 246 NAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVR 305

Query: 311 V-YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           + + +M++ G   D+ +YN L++     G    +  ++ ++      G ++ D+ TY+ +
Sbjct: 306 LLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDL----LDGGVEPDMSTYAGL 361

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + A K+   ML + VTP T  ++ LI A  NA L  +A + F  M ++GC
Sbjct: 362 LYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGC 421

Query: 430 EPNSQCCNILLQA 442
           +P+ +  N L+ A
Sbjct: 422 KPDLETYNALIGA 434



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 18/211 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY- 312
           P+M     ++  CG  G +  ++ I+  +    VT     F  L+    +   ++   Y 
Sbjct: 353 PDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYA 412

Query: 313 -KNMQKLGVMADMASYNILLKA------CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
             +M++ G   D+ +YN L+ A       C AG+  L     G          +  DV T
Sbjct: 413 FNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEG----------ISADVST 462

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+++++ F     +  A++   DM  A  +PN  T+ +L+     AGL ++A   F ++ 
Sbjct: 463 YNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTAGLFDEAKAQFLDLQ 522

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             G  P+     +LL  C    ++D A ++ 
Sbjct: 523 VGGELPSVDSYCLLLSVCARRNRWDDASKVL 553



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 82/223 (36%), Gaps = 40/223 (17%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDML-SAGVTPNTITWSSLINACANAGLVEQAM 418
           KL +  +S I + FA    WQ AL++ + M       PN   ++ +I      G++++A 
Sbjct: 35  KLTINDFSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKAS 94

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL---------- 468
            LFE+M     E N      L+ A     Q + +  L       K    L          
Sbjct: 95  ELFEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINAC 154

Query: 469 ---GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525
              G +++G     + M H+  Q                        P   TYN L+ AC
Sbjct: 155 AKGGLEWEGLLGLFAQMRHEGIQ------------------------PDIITYNTLLSAC 190

Query: 526 CTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNVEG 566
            +     +A M    M   G+ P+ I++  L+D  G +   EG
Sbjct: 191 SSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEG 233


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 170/381 (44%), Gaps = 34/381 (8%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           I+P  ++++   +  F K   + +A + +D       SP+     T+I   G  G  ++ 
Sbjct: 359 IIP-DNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEP 417

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           + ++ ++ S+ +  +   + +L++V   A ++     ++  M ++G+  ++ +Y  L+  
Sbjct: 418 QNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDG 477

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C  G    A E+  E++    K  L+L+V  Y+++V     A   + A+K+ ++M  AG
Sbjct: 478 LCKHGELDTANELLDEMR----KKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAG 533

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + P+ IT++++I+A    G +++A  L +EML  G +P     N+L+         +   
Sbjct: 534 IDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGD 593

Query: 454 RLFRSWTLSKTQVALGEDYD------------GNTDRI-SNMEHKDKQSITNTPNFVPNS 500
           RL   W L K  V     Y+              T +I   M ++     +NT N +   
Sbjct: 594 RLL-GWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKG 652

Query: 501 HYSSFDKR---FSFK--------PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN 547
           H  + + +   F +K        PT T+YN L+K       +   + L  EMR  GL  +
Sbjct: 653 HCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVAD 712

Query: 548 HISWTILIDACGGSGNVEGAL 568
              +   +D C   G+VE  L
Sbjct: 713 GEIYNFFVDMCYEEGDVEITL 733



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 147/360 (40%), Gaps = 33/360 (9%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295
           +L  AL+  D  +     PN Y   +II +    G   ++  +  ++ SQ +  +  V+ 
Sbjct: 308 ELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYT 367

Query: 296 SLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           +L++       ++   + +  M    +  D  +Y  L++     G  +  Q ++ E   +
Sbjct: 368 TLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHE---M 424

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
            ++G LK D  TY+T++ V+  A     A  +  +M+  G+TPN +T+ +LI+     G 
Sbjct: 425 ISRG-LKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGE 483

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-------------T 460
           ++ A  L +EM + G + N    N ++    +A   ++A +L +               T
Sbjct: 484 LDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTT 543

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH-----YSSFDKRFSFK--- 512
           +      LG D D     +  M  +  Q    T N + N           D+   +    
Sbjct: 544 VIDAYCRLG-DIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEK 602

Query: 513 ---PTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              P   TYN LMK  C          +   MR  G++P+  ++ ILI     + N++ A
Sbjct: 603 GIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEA 662



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 123/300 (41%), Gaps = 18/300 (6%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNI 329
           G   ++R + + L S  + + +   N+ ++  A++ +      K   + G+  +  SYNI
Sbjct: 204 GHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYNI 263

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           ++ + C  G    A  +  ++    +      DV +YST++  +      + ALK+ +DM
Sbjct: 264 IIYSLCRLGKVKEAHRLLMQMDFRSSTP----DVVSYSTVIDGYCHLGELKKALKLMDDM 319

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
              G+ PN  T++S+I      G   +A  +  EM+     P++     L+    +    
Sbjct: 320 QIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHV 379

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
             A + F    LSK    +  DY   T  I       K          P + +     R 
Sbjct: 380 RTANKWFDE-MLSK---KISPDYITYTTLIQGFGQGGKV-------IEPQNLFHEMISR- 427

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             KP   TY  L+   C     V A  L NEM  +G++PN +++  LID     G ++ A
Sbjct: 428 GLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTA 487


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 158/370 (42%), Gaps = 35/370 (9%)

Query: 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288
           R     RD   A R +    ++  SPN+Y    II      GD  K       +  + ++
Sbjct: 180 RSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGIS 239

Query: 289 LNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
            N+  +N+L++ +     +K  + + + M   GV A++ SYN ++   C  G      E+
Sbjct: 240 PNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGEL 299

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
              V+ +  KG++  D  TY+T+V  F         L +  +M+  G++PN +T+++LIN
Sbjct: 300 ---VEEMRGKGLVP-DEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLIN 355

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK--- 463
               AG + +A+ +F++M   G  PN +    L+    +    + A+++     +S    
Sbjct: 356 CMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSP 415

Query: 464 ---TQVALGEDY---DGNTDRISNMEHKDKQSITNTPNFVPNS-------HYSSFDKRFS 510
              T  AL   Y       + +  +    ++ +   P+ V  S             K F 
Sbjct: 416 SVVTYNALVHGYCFLGRVQEAVGILRGMVERGL--PPDVVSYSTVIAGFCRERELGKAFQ 473

Query: 511 FK---------PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACG 559
            K         P T TY+ L++  C     V+A  L  EM   GL P+ +++T LI+A  
Sbjct: 474 MKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYC 533

Query: 560 GSGNVEGALQ 569
             G +  AL+
Sbjct: 534 VDGELSKALR 543



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 129/552 (23%), Positives = 226/552 (40%), Gaps = 89/552 (16%)

Query: 50  PTVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFAS 109
           PTV S    L + +RR  S+  DY  D A ++ +D       M+   V           +
Sbjct: 165 PTVLSYNAVLDALLRRSSSNHRDY--DDAERVFRD-------MVRNGVS---------PN 206

Query: 110 MLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPL-----ELFDGSGFKLLKNECQR 164
           + +  ++  G+V    +G ++  +G ++K+ + G++P       L D S  K    E   
Sbjct: 207 VYTYNVIIRGVVS---QGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMA 263

Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF 224
           LL +  V    G+   L  +   +  L  + R+ ++     ++   +R   +VP  ++ +
Sbjct: 264 LLRAMAVG---GVAANLISYNSVINGLCGKGRMSEVG----ELVEEMRGKGLVPD-EVTY 315

Query: 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284
              V  F K+ +L   L           SPN+    T+I+     G+  ++  I++ +R 
Sbjct: 316 NTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRV 375

Query: 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLAGNTV 341
           + +  N   + +L++          E YK + ++   G    + +YN L+   C  G   
Sbjct: 376 RGLRPNERTYTTLIDGFCQK-GLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRV- 433

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
             QE  G ++ +  +G L  DV +YST++  F   +    A ++KE+M+  GV P+T+T+
Sbjct: 434 --QEAVGILRGMVERG-LPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTY 490

Query: 402 SSLINA-CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFRLFRSW 459
           SSLI   C    LVE A  LF EM++ G  P+      L+ A CV+  +  +A RL    
Sbjct: 491 SSLIQGLCLQQKLVE-AFDLFREMMRRGLPPDEVTYTSLINAYCVDG-ELSKALRLHDEM 548

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK------- 512
                Q     D    +  I+ +  K +  +                KR   K       
Sbjct: 549 ----VQRGFLPDNVTYSVLINGLNKKARTKVA---------------KRLLLKLFYEESV 589

Query: 513 PTTTTYNILMKACCTDYYR----------VKALMNEMRTV-------GLSPNHISWTILI 555
           P   TYN L++ C  + ++          +K LMNE   V          PN   + ++I
Sbjct: 590 PDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMI 649

Query: 556 DACGGSGNVEGA 567
                 GNV  A
Sbjct: 650 HGHSRGGNVHKA 661



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 14/221 (6%)

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           +H  A  VL  +    + + +  ++ + +  A +V  DM+  GV+PN  T++ +I    +
Sbjct: 160 RHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVS 219

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G +E+ +    +M + G  PN    N L+ A  +  +   A  L R+  +      L  
Sbjct: 220 QGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANL-I 278

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD-- 528
            Y+   + +       K  ++     V         +     P   TYN L+   C +  
Sbjct: 279 SYNSVINGLCG-----KGRMSEVGELVEEM------RGKGLVPDEVTYNTLVNGFCKEGN 327

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            ++   L++EM   GLSPN +++T LI+    +GN+  A++
Sbjct: 328 LHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVE 368



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 73/163 (44%), Gaps = 19/163 (11%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            ++++ M + G+  D  +Y  L+ A C+ G    A  ++ E   +  +G L  D  TYS 
Sbjct: 507 FDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDE---MVQRGFLP-DNVTYSV 562

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN---------------AGL 413
           ++         ++A ++   +      P+ +T+++LI  C+N                GL
Sbjct: 563 LINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGL 622

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           + +A  +F+ MLQ   +PN+   N+++          +A+ L+
Sbjct: 623 MNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLY 665



 Score = 38.5 bits (88), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 91/455 (20%), Positives = 174/455 (38%), Gaps = 80/455 (17%)

Query: 74  YADMASKLAKDGRLEEFAMIVESV------------------VVSEGNVSKFASMLSLEM 115
           Y  + + L   GR+ E   +VE +                     EGN+ +   +LS EM
Sbjct: 280 YNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLS-EM 338

Query: 116 VASGIVKSI-----------REGRIDCVVGVLKKLNELGVAPLE-----LFDGSGFKLLK 159
           V  G+  ++           + G +   V +  ++   G+ P E     L DG   K L 
Sbjct: 339 VGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLM 398

Query: 160 NECQRLLDSGEVEMF---VGLMEVLEEFRLPVKELDEEFRIVQLCVNK---PDVNLAIRY 213
           NE  ++L    V  F   V     L      +  + E   I++  V +   PDV   + Y
Sbjct: 399 NEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDV---VSY 455

Query: 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
           + ++         F RE    R+L  A +  +   +    P+     ++I    +    +
Sbjct: 456 STVI-------AGFCRE----RELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLV 504

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILL 331
           ++  ++ ++  + +  +   + SL+N    D  L   L ++  M + G + D  +Y++L+
Sbjct: 505 EAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLI 564

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI---------------VKVFADA 376
                   T +A+ +  ++ + E+      D  TY+T+               VK F   
Sbjct: 565 NGLNKKARTKVAKRLLLKLFYEESVP----DDVTYNTLIENCSNNEFKSVEGLVKGFCMK 620

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A +V + ML     PN   ++ +I+  +  G V +A +L+ E+  +    ++   
Sbjct: 621 GLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAV 680

Query: 437 NILLQACVEACQFDRAFRL----FRSWTLSKTQVA 467
             L++A       D   RL     RS  L+  +VA
Sbjct: 681 IALVKALAREGMNDELSRLLQNILRSCRLNDAKVA 715


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 143/353 (40%), Gaps = 61/353 (17%)

Query: 222 ILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           +++ + +R F   G+K D     + +    +    P++ +  T +D     G+  K R I
Sbjct: 494 VVYTSLIRNFFIHGRKED---GHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMI 550

Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           +ED+RS     ++  ++ L++    A   + T  ++  M++ G   D  +YN ++   C 
Sbjct: 551 FEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCK 610

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           +G    A EI  E+K    +  ++  V TY  IV   A       A  + E+  S G+  
Sbjct: 611 SGKVHKAYEILEEMK----EKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIEL 666

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N + +SSLI+     G +++A  + EEM++ G  PN    N LL A V+A + + A   F
Sbjct: 667 NVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCF 726

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
           +S                                                K     P T 
Sbjct: 727 QSM-----------------------------------------------KEMKCPPNTY 739

Query: 517 TYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           TY+IL+   C    Y +      +M+  GL PN +++T +I      GN+  A
Sbjct: 740 TYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDA 792



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 95/190 (50%), Gaps = 6/190 (3%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           N+ +  ++ID  G  G   ++  I E++  + +T N+Y +NSL++  V A ++   L  +
Sbjct: 667 NVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCF 726

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           ++M+++    +  +Y+IL+   C       A   +   + ++ +G++  +V TY+T++  
Sbjct: 727 QSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFW---QDMQKQGLVP-NVVTYTTMISG 782

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
            A       A  + E   + G  P+  ++++LI   +NA    +A  +FEE    GC  N
Sbjct: 783 LAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRIN 842

Query: 433 SQCCNILLQA 442
            + C  LL A
Sbjct: 843 IKSCISLLDA 852



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 85/416 (20%), Positives = 147/416 (35%), Gaps = 102/416 (24%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           S P  Y   T+I   G  G +  +  + E LR +    ++  FNS++       K    L
Sbjct: 315 SVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEAL 374

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +++ M+K     + ++YNI++   CL G    A  I  E++H      L  ++ T + +
Sbjct: 375 SLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEH----ASLFPNLLTVNIM 429

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE------- 422
           V     A+  + A K+ E     G  P+ +T+ SLI+     G V++A  LFE       
Sbjct: 430 VDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGH 489

Query: 423 ----------------------------EMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
                                       E+++ GC+P+    N  +    +A + ++   
Sbjct: 490 NANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRM 549

Query: 455 LF---RSWTL-----SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF- 505
           +F   RS+       S + +  G    G     SN+ H  KQ          N+    F 
Sbjct: 550 IFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFC 609

Query: 506 --------------DKRFSFKPTTTTY------------------------------NIL 521
                          K    +PT  TY                              N++
Sbjct: 610 KSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVV 669

Query: 522 MKACCTDYY-------RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           + +   D +           ++ EM   GL+PN  +W  L+DA   +  +  AL C
Sbjct: 670 LYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVC 725



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 107/243 (44%), Gaps = 10/243 (4%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           V  F K   +  A    +  K+    P +     I+D         ++  ++E+ +S+ +
Sbjct: 605 VDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGI 664

Query: 288 TLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            LN+ +++SL++    V   D  +   + + M K G+  ++ ++N LL A   A     A
Sbjct: 665 ELNVVLYSSLIDGFGKVGRIDEAYL--ILEEMMKKGLTPNVYTWNSLLDALVKAEEINEA 722

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
              +  +K ++       + +TYS ++      + +  A    +DM   G+ PN +T+++
Sbjct: 723 LVCFQSMKEMKCPP----NTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTT 778

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           +I+  A  G +  A  LFE     G  P++   N L++    A +   A+++F    L  
Sbjct: 779 MISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRG 838

Query: 464 TQV 466
            ++
Sbjct: 839 CRI 841



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 148/368 (40%), Gaps = 32/368 (8%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           LF   VR   ++  +  AL   D  K     P++ +    ID  G  G+   +   + +L
Sbjct: 216 LFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHEL 275

Query: 283 RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           ++Q +  +   + S++ V   A  L    E++  M+    +    +YN ++     AG  
Sbjct: 276 KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRF 335

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
              ++ Y  ++ L  +G +   V ++++I+      +    AL + E ++     PN+ T
Sbjct: 336 ---EDAYKLLERLRERGCIP-SVVSFNSILTCLGKKRKVDEALSLFE-VMKKDAEPNSST 390

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++ +I+     G VE+A  + +EM  A   PN    NI++    +A + + A+++F S +
Sbjct: 391 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 450

Query: 461 --------LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF------- 505
                   ++   +  G    G  D    +  K   +  N    V  S   +F       
Sbjct: 451 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKE 510

Query: 506 DKRFSF--------KPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILI 555
           D    F        KP  T  N  M       +  + + +  ++R+ G  P+  S++ILI
Sbjct: 511 DGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILI 570

Query: 556 DACGGSGN 563
                +G 
Sbjct: 571 HGLTKAGQ 578



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 112/268 (41%), Gaps = 53/268 (19%)

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            LE+ + MQ++G    +  +  L++A    G    A  +  EVK       L+ D+  Y+
Sbjct: 198 ALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVK----GSCLEPDIVLYN 253

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
             +  F  A    MA K   ++ + G+ P+ ++++S+I     AG + +A  LF +M   
Sbjct: 254 VCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAE 313

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
              P +   N ++     A +F+ A++L                     +R+     +++
Sbjct: 314 RSVPCAYAYNTMIMGYGSAGRFEDAYKLL--------------------ERL-----RER 348

Query: 488 QSITNTPNFVPNSHYSSFDKRFSF--------------KPTTTTYNILMKACC-----TD 528
             I +  +F  NS  +   K+                 +P ++TYNI++   C      +
Sbjct: 349 GCIPSVVSF--NSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEE 406

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILID 556
            YR+   ++EM    L PN ++  I++D
Sbjct: 407 AYRI---LDEMEHASLFPNLLTVNIMVD 431


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 143/353 (40%), Gaps = 61/353 (17%)

Query: 222 ILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           +++ + +R F   G+K D     + +    +    P++ +  T +D     G+  K R I
Sbjct: 360 VVYTSLIRNFFIHGRKED---GHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMI 416

Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           +ED+RS     ++  ++ L++    A   + T  ++  M++ G   D  +YN ++   C 
Sbjct: 417 FEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCK 476

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           +G    A EI  E+K    +  ++  V TY  IV   A       A  + E+  S G+  
Sbjct: 477 SGKVHKAYEILEEMK----EKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIEL 532

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N + +SSLI+     G +++A  + EEM++ G  PN    N LL A V+A + + A   F
Sbjct: 533 NVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCF 592

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
           +S                                                K     P T 
Sbjct: 593 QSM-----------------------------------------------KEMKCPPNTY 605

Query: 517 TYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           TY+IL+   C    Y +      +M+  GL PN +++T +I      GN+  A
Sbjct: 606 TYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDA 658



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/416 (20%), Positives = 147/416 (35%), Gaps = 102/416 (24%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           S P  Y   T+I   G  G +  +  + E LR +    ++  FNS++       K    L
Sbjct: 181 SVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEAL 240

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +++ M+K     + ++YNI++   CL G    A  I  E++H      L  ++ T + +
Sbjct: 241 SLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEH----ASLFPNLLTVNIM 295

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE------- 422
           V     A+  + A K+ E     G  P+ +T+ SLI+     G V++A  LFE       
Sbjct: 296 VDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGH 355

Query: 423 ----------------------------EMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
                                       E+++ GC+P+    N  +    +A + ++   
Sbjct: 356 NANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRM 415

Query: 455 LF---RSWTL-----SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF- 505
           +F   RS+       S + +  G    G     SN+ H  KQ          N+    F 
Sbjct: 416 IFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFC 475

Query: 506 --------------DKRFSFKPTTTTY------------------------------NIL 521
                          K    +PT  TY                              N++
Sbjct: 476 KSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVV 535

Query: 522 MKACCTDYY-------RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           + +   D +           ++ EM   GL+PN  +W  L+DA   +  +  AL C
Sbjct: 536 LYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVC 591



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 148/368 (40%), Gaps = 32/368 (8%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           LF   VR   ++  +  AL   D  K     P++ +    ID  G  G+   +   + +L
Sbjct: 82  LFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHEL 141

Query: 283 RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           ++Q +  +   + S++ V   A  L    E++  M+    +    +YN ++     AG  
Sbjct: 142 KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRF 201

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
              ++ Y  ++ L  +G +   V ++++I+      +    AL + E ++     PN+ T
Sbjct: 202 ---EDAYKLLERLRERGCIP-SVVSFNSILTCLGKKRKVDEALSLFE-VMKKDAEPNSST 256

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++ +I+     G VE+A  + +EM  A   PN    NI++    +A + + A+++F S +
Sbjct: 257 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 316

Query: 461 --------LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF------- 505
                   ++   +  G    G  D    +  K   +  N    V  S   +F       
Sbjct: 317 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKE 376

Query: 506 DKRFSF--------KPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILI 555
           D    F        KP  T  N  M       +  + + +  ++R+ G  P+  S++ILI
Sbjct: 377 DGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILI 436

Query: 556 DACGGSGN 563
                +G 
Sbjct: 437 HGLTKAGQ 444



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 112/268 (41%), Gaps = 53/268 (19%)

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            LE+ + MQ++G    +  +  L++A    G    A  +  EVK       L+ D+  Y+
Sbjct: 64  ALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVK----GSCLEPDIVLYN 119

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
             +  F  A    MA K   ++ + G+ P+ ++++S+I     AG + +A  LF +M   
Sbjct: 120 VCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAE 179

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
              P +   N ++     A +F+ A++L                     +R+     +++
Sbjct: 180 RSVPCAYAYNTMIMGYGSAGRFEDAYKLL--------------------ERL-----RER 214

Query: 488 QSITNTPNFVPNSHYSSFDKRFSF--------------KPTTTTYNILMKACC-----TD 528
             I +  +F  NS  +   K+                 +P ++TYNI++   C      +
Sbjct: 215 GCIPSVVSF--NSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEE 272

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILID 556
            YR+   ++EM    L PN ++  I++D
Sbjct: 273 AYRI---LDEMEHASLFPNLLTVNIMVD 297



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 107/237 (45%), Gaps = 17/237 (7%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           V  F K   +  A    +  K+    P +     I+D         ++  ++E+ +S+ +
Sbjct: 471 VDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGI 530

Query: 288 TLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            LN+ +++SL++    V   D  +   + + M K G+  ++ ++N LL A       V A
Sbjct: 531 ELNVVLYSSLIDGFGKVGRIDEAYL--ILEEMMKKGLTPNVYTWNSLLDA------LVKA 582

Query: 344 QEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
           +EI   +   ++   +K   + +TYS ++      + +  A    +DM   G+ PN +T+
Sbjct: 583 EEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTY 642

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +++I+  A  G +  A  LFE     G  P++   N L++    A   +RA   +++
Sbjct: 643 TTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNA---NRAMEAYQT 696


>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
 gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
          Length = 630

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 122/243 (50%), Gaps = 12/243 (4%)

Query: 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           A I  C + ++  +  +L++ +R  +  +      N++    +++VC  CG    +  IY
Sbjct: 73  ATISLCIYSQDVDRAMELMNEMRQRNIER------NVHTFTALMNVCIKCGKLPLALEIY 126

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLA 337
            ++R+ N   N+  +N+L++V     ++   + V   M++ GV   + +YN L+ AC + 
Sbjct: 127 NNMRAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMC 186

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
                A  +Y   + L + G    +  TY+ ++  +        AL+V ++ML   +  +
Sbjct: 187 NQPREALAVY---QRLLSDGYTP-NSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERS 242

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            IT+SSLI+AC  AG  E A+ +F EM Q  C PN+   N L+ AC +  Q+++A  +F 
Sbjct: 243 VITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFE 302

Query: 458 SWT 460
             T
Sbjct: 303 QMT 305



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 151/335 (45%), Gaps = 17/335 (5%)

Query: 133 VGVLKKLNELGVAPLELFDGSGFKLLKNECQRL-LDSGEVEMFVGLMEVLEEFRLPVKEL 191
           +G  ++L E+    L   D     LL  +  RL  D   +E+F  L    E  R P+++L
Sbjct: 8   LGQNEELPEVIFRALHHVDSRAVALLLKDLSRLGKDRRAMELFDWLRSANE--RSPLRQL 65

Query: 192 DEEFR---IVQLCVNKPDVNLAIRYACIVPRADI-----LFCNFVREFGKKRDLVSALRA 243
            + +     + LC+   DV+ A+     + + +I      F   +    K   L  AL  
Sbjct: 66  CDVYSYTATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEI 125

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--N 301
           Y+  +     PN+    T++DV G  G + ++  + + ++ + V   +  +N+L+     
Sbjct: 126 YNNMRAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNM 185

Query: 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
            +  +  L VY+ +   G   +  +YN L+ A         A E+Y E+     +  ++ 
Sbjct: 186 CNQPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEM----LRQNMER 241

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
            V TYS+++     A  W+ AL++  +M      PNT+T++SL+ ACA  G  E+A  +F
Sbjct: 242 SVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVF 301

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           E+M   GC P+      L+ A     Q+ +A + F
Sbjct: 302 EQMTAHGCTPDVVTYTALISAYERGGQWQKALQAF 336



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 9/240 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   V  +GK      A+   D  K+    P +    T+I  C +C    ++ A+Y+ 
Sbjct: 139 VTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQR 198

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           L S   T N   +N+L++     ++    LEVY+ M +  +   + +Y+ L+ AC  AG 
Sbjct: 199 LLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQ 258

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  I+ E++          +  TY+++V   A    W+ A +V E M + G TP+ +
Sbjct: 259 WETALRIFNEMQQDNCVP----NTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVV 314

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF---DRAFRLF 456
           T+++LI+A    G  ++A+  F +M   GC+P++   N ++    E        RA +LF
Sbjct: 315 TYTALISAYERGGQWQKALQAFGKMCMQGCKPDAIVYNAIIDTLWETGIIWAQGRALQLF 374


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 153/343 (44%), Gaps = 59/343 (17%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           K R +  AL  +   K    SP+++   ++I   G+C    + ++ A+  ++RS N+  +
Sbjct: 250 KDRRVNEALDIFSYMKVKGISPDIFTYNSLIQ--GLCNFSQWKEASALLNEMRSLNIMPD 307

Query: 291 IYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           I  FN L++    + K +    V K M ++GV  D+ +Y+ L+    L    V A++++ 
Sbjct: 308 IVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFD 367

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
               +  KG  K DVF+Y+ ++  +   K    A ++  +M+  G+TPN +++++LI+  
Sbjct: 368 A---MITKGC-KPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGL 423

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468
              G + +A +LF+ M   G  PN    +ILL    +   F +AFRLFR+          
Sbjct: 424 CQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAM--------- 474

Query: 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT- 527
                              QS  + PN V                    YNIL+ A C  
Sbjct: 475 -------------------QSTYSKPNLV-------------------MYNILIDAMCKS 496

Query: 528 -DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +    + L +E+   GL PN   +T +I+     G ++ AL+
Sbjct: 497 GNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALE 539



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 149/354 (42%), Gaps = 28/354 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + F   +    K      A+  +D        P++Y   TII+  G+C  G+   +  + 
Sbjct: 169 VTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIIN--GLCKIGETAAAAGLL 226

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLA 337
           + +       N+  ++++++ +  D +    L+++  M+  G+  D+ +YN L++  C  
Sbjct: 227 KKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNF 286

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
                A  +  E++ L     +  D+ T++ +V           A  V + M   GV P+
Sbjct: 287 SQWKEASALLNEMRSLN----IMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPD 342

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +T+SSL+   +    V +A  LF+ M+  GC+P+    NIL+    +  + D A +LF 
Sbjct: 343 VVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFN 402

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQ--SITNTPNFVPNSHYSSFDKRFSFKPTT 515
                     + +    N    + + H   Q  S+    N   N H +         P  
Sbjct: 403 EM--------IHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGN------LPNL 448

Query: 516 TTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            TY+IL+   C   Y  KA  L   M++    PN + + ILIDA   SGN+  A
Sbjct: 449 FTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDA 502



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 128/310 (41%), Gaps = 41/310 (13%)

Query: 290 NIYVFNSLMNVNAH----DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
           NIY  + L+N  +H    DL F+  V   + KLG+   + ++  L+   C  G    A E
Sbjct: 132 NIYTLSILINCFSHLQRVDLAFS--VLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAME 189

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           ++ +   + A+G  + DV+TY+TI+           A  + + M  AG  PN +T+S++I
Sbjct: 190 LFDD---MVARGC-RPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTII 245

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWTLS 462
           ++      V +A+ +F  M   G  P+    N L+Q      Q+  A  L    RS  + 
Sbjct: 246 DSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIM 305

Query: 463 KTQVALGEDYDG--NTDRISNMEH--KDKQSITNTPNFVPNSHYSSFDKRFSF------- 511
              V      D      ++S  +   K    +   P+ V    YSS    +S        
Sbjct: 306 PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVT---YSSLMYGYSLRSEVVEA 362

Query: 512 ------------KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
                       KP   +YNIL+   C        K L NEM   GL+PN++S+  LI  
Sbjct: 363 RKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHG 422

Query: 558 CGGSGNVEGA 567
               G++  A
Sbjct: 423 LCQLGSLREA 432



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 15/219 (6%)

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K +E  G L  +++T S ++  F+  +   +A  V   ++  G+ P  +T+++LIN    
Sbjct: 122 KQMELAG-LSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCK 180

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G   QAM LF++M+  GC P+      ++    +  +   A  L     L K + A  +
Sbjct: 181 VGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGL-----LKKMEEAGCQ 235

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TD 528
                   I +   KD++       F       S+ K     P   TYN L++  C  + 
Sbjct: 236 PNVVTYSTIIDSHRKDRRVNEALDIF-------SYMKVKGISPDIFTYNSLIQGLCNFSQ 288

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           +    AL+NEMR++ + P+ +++ +L+D     G V  A
Sbjct: 289 WKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEA 327



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 91/190 (47%), Gaps = 6/190 (3%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           + +++R +++ + ++    +++ +N L+N       +    +++  M   G+  +  SYN
Sbjct: 358 EVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYN 417

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            L+   C  G+   A+ ++   K++   G L  ++FTYS ++  F    ++  A ++   
Sbjct: 418 TLIHGLCQLGSLREARNLF---KNMHTNGNLP-NLFTYSILLDGFCKQGYFGKAFRLFRA 473

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M S    PN + ++ LI+A   +G +  A  LF E+   G +PN+Q    ++    +   
Sbjct: 474 MQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGL 533

Query: 449 FDRAFRLFRS 458
            D A   FR+
Sbjct: 534 LDEALEAFRN 543



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 113/238 (47%), Gaps = 10/238 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIY 279
           + + + +  +  + ++V A + +DA       P+++    +I+  G C      +++ ++
Sbjct: 344 VTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILIN--GYCKVKRIDEAKQLF 401

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
            ++  Q +T N   +N+L++       L+    ++KNM   G + ++ +Y+ILL   C  
Sbjct: 402 NEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQ 461

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A  ++  ++   +K     ++  Y+ ++     +   + A K+  ++   G+ PN
Sbjct: 462 GYFGKAFRLFRAMQSTYSKP----NLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPN 517

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
              ++++IN     GL+++A+  F  M + GC P+    N++++  +      RA +L
Sbjct: 518 AQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQL 575



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 106/261 (40%), Gaps = 34/261 (13%)

Query: 125 REGRIDCVVGVLKKLNELGVAP-----LELFDGSGFKLLKNECQRLLD---SGEVEMFVG 176
           +EG++    GVLK + E+GV P       L  G   +    E ++L D   +   +  V 
Sbjct: 320 KEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVF 379

Query: 177 LMEVLEEFRLPVKELDEEFRIVQ------LCVNKPDVNLAIRYACIVP---RADILFCN- 226
              +L      VK +DE  ++        L  N    N  I   C +     A  LF N 
Sbjct: 380 SYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNM 439

Query: 227 --------------FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
                          +  F K+     A R + A +   S PN+ +   +ID     G+ 
Sbjct: 440 HTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNL 499

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNIL 330
             +R ++ +L  + +  N  ++ +++N    +  L   LE ++NM++ G   D  SYN++
Sbjct: 500 RDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVI 559

Query: 331 LKACCLAGNTVLAQEIYGEVK 351
           ++      +   A ++ GE++
Sbjct: 560 IRGFLHHKDESRAVQLIGEMR 580


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 151/323 (46%), Gaps = 35/323 (10%)

Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL-----EVYKNM 315
           I + G+C  G   K+  I ED++ + V+ N+  +N+L++      K         + K M
Sbjct: 168 IVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEM 227

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           +  G+  +  ++NIL+   C   N   A +++ E+     +GV K +V TY++++    +
Sbjct: 228 RADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNR---QGV-KPNVVTYNSLINGLCN 283

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
                 A  +++ M+++ + PN IT ++L+N      +V+QA  LF++M + G  PN   
Sbjct: 284 NGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTT 343

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE----DYDGNTDRISNMEHK-DKQSI 490
            NIL+ A  +    + AF L+R        + LG+    D       I+ +  K D ++ 
Sbjct: 344 YNILIDAYCKDENMEDAFALYR--------IMLGKGVCPDVSTYNCLIAGLCRKGDLEAA 395

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNH 548
            N  + +   H          K    TYNIL+ + C      KA  L++EM   GL P+ 
Sbjct: 396 RNLVSEMDTKH---------LKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQ 446

Query: 549 ISWTILIDACGGSGNVEGALQCR 571
           +++  +ID     GN+  AL  R
Sbjct: 447 LTYNTMIDGYCKEGNLRAALNLR 469



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 103/233 (44%), Gaps = 49/233 (21%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTL 309
           PN+     +++  G C + M  +A  +++D+  Q +T N+  +N L++    D  ++   
Sbjct: 304 PNIITHNALLN--GFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAF 361

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV--KHLEAKGVLKLDVFTYS 367
            +Y+ M   GV  D+++YN L+   C  G+   A+ +  E+  KHL+A      D+ TY+
Sbjct: 362 ALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKA------DLITYN 415

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGL------------- 413
            ++    +    + AL++ ++M   G+ P+ +T++++I+  C    L             
Sbjct: 416 ILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKV 475

Query: 414 ---------------------VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
                                +E A  L  EML+ G  PN     I+ +  +E
Sbjct: 476 GRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMME 528



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 9/163 (5%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV 320
           + G+C  GD   +R +  ++ ++++  ++  +N L++   N  ++K  L +   M + G+
Sbjct: 383 IAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGL 442

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
                +YN ++   C  GN   A  +  +   +E  G L  +V TY+ ++K F      +
Sbjct: 443 KPSQLTYNTMIDGYCKEGNLRAALNLRSQ---MEKVGRLA-NVATYNVLIKGFCKKDKLE 498

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ-AMHLFE 422
            A  +  +ML  G+ PN +T+  +       G V     HL++
Sbjct: 499 DANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVPDIEGHLYK 541


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 172/385 (44%), Gaps = 42/385 (10%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           I+P  ++++   +  F K   + +A + +D       SP+     T+I   G  G  ++ 
Sbjct: 359 IIP-DNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEP 417

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           + ++ ++ S+ +  +   + +L++V   A ++     ++  M ++G+  ++ +Y  L+  
Sbjct: 418 QNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDG 477

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C  G    A E+  E++    K  L+L+V  Y+++V     A   + A+K+ ++M  AG
Sbjct: 478 LCKHGELDTANELLDEMR----KKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAG 533

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + P+ IT++++I+A    G +++A  L +EML  G +P     N+L+         +   
Sbjct: 534 IDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGD 593

Query: 454 RLFRSWTLSKTQVALGEDYD------------GNTDRI-SNMEHKDKQSITNTPNFVPNS 500
           RL   W L K  V     Y+              T +I   M ++     +NT N +   
Sbjct: 594 RLL-GWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKG 652

Query: 501 HYSSFDKR---FSFK--------PTTTTYNILMKACCTDYYRVKA------LMNEMRTVG 543
           H  + + +   F +K        PT T+YN L+K     +Y+ K       L  EMR  G
Sbjct: 653 HCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKR----FYKKKKILEARELFEEMRGHG 708

Query: 544 LSPNHISWTILIDACGGSGNVEGAL 568
           L  +   +   +D C   G+VE  L
Sbjct: 709 LVADGEIYNFFVDMCYEEGDVEITL 733



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 147/360 (40%), Gaps = 33/360 (9%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295
           +L  AL+  D  +     PN Y   +II +    G   ++  +  ++ SQ +  +  V+ 
Sbjct: 308 ELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYT 367

Query: 296 SLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           +L++       ++   + +  M    +  D  +Y  L++     G  +  Q ++ E   +
Sbjct: 368 TLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHE---M 424

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
            ++G LK D  TY+T++ V+  A     A  +  +M+  G+TPN +T+ +LI+     G 
Sbjct: 425 ISRG-LKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGE 483

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-------------T 460
           ++ A  L +EM + G + N    N ++    +A   ++A +L +               T
Sbjct: 484 LDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTT 543

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH-----YSSFDKRFSFK--- 512
           +      LG D D     +  M  +  Q    T N + N           D+   +    
Sbjct: 544 VIDAYCRLG-DIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEK 602

Query: 513 ---PTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              P   TYN LMK  C          +   MR  G++P+  ++ ILI     + N++ A
Sbjct: 603 GIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEA 662



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 123/300 (41%), Gaps = 18/300 (6%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNI 329
           G   ++R + + L S  + + +   N+ ++  A++ +      K   + G+  +  SYNI
Sbjct: 204 GHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYNI 263

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           ++ + C  G    A  +  ++    +      DV +YST++  +      + ALK+ +DM
Sbjct: 264 IIYSLCRLGKVKEAHRLLMQMDFRSSTP----DVVSYSTVIDGYCHLGELKKALKLMDDM 319

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
              G+ PN  T++S+I      G   +A  +  EM+     P++     L+    +    
Sbjct: 320 QIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHV 379

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
             A + F    LSK    +  DY   T  I       K          P + +     R 
Sbjct: 380 RTANKWFDE-MLSK---KISPDYITYTTLIQGFGQGGKV-------IEPQNLFHEMISR- 427

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             KP   TY  L+   C     V A  L NEM  +G++PN +++  LID     G ++ A
Sbjct: 428 GLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTA 487


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 148/349 (42%), Gaps = 64/349 (18%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID-VC--GICGDYMKSRAIYEDLRSQN 286
           +  K  D +  ++A+  S      PN+    T++D  C  G  G   K+ A  +++ +  
Sbjct: 215 KLNKAEDAIEDMKAWGIS------PNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANK 268

Query: 287 VTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +  N   FN+L++    D  +    + ++ MQK G+  ++ +YN L+   C  G    A 
Sbjct: 269 ICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAI 328

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           +++ ++  L     LK ++ TY+ ++  F   K  + A KV +D+    + PN IT++++
Sbjct: 329 DLWDKMVGLG----LKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTM 384

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
           I+A    G++E+   L   ML  G  PN    N L+              L R   L   
Sbjct: 385 IDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAG------------LCRKQDLQAA 432

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
           +  L E           ME+K                          K    TYNIL+  
Sbjct: 433 KELLNE-----------MENK------------------------GLKGDVVTYNILIDG 457

Query: 525 CC-TDYYR-VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            C  D  R  + L+NEM  +GL PNH+++  L+D     G ++ AL  R
Sbjct: 458 LCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVR 506



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 132/300 (44%), Gaps = 49/300 (16%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +Y+++  + +  N+  FN  +N    A  L    +  ++M+  G+  ++ +YN L+   C
Sbjct: 187 VYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYC 246

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     +    +K + A  +   +V T++T++  F   +    A K  E+M   G+ 
Sbjct: 247 KRGSAGKMYKAEAFMKEMLANKICPNEV-TFNTLIDGFCKDENVAAAKKAFEEMQKQGLK 305

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T++SLIN   N G +E+A+ L+++M+  G +PN    N L+    +      A ++
Sbjct: 306 PNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKV 365

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP-NSHYSSF------DKR 508
           F                    D +S      KQ +   PN +  N+   ++      ++ 
Sbjct: 366 F--------------------DDVS------KQEL--VPNVITFNTMIDAYCKEGMMEEG 397

Query: 509 FSF---------KPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           FS           P  +TYN L+   C   D    K L+NEM   GL  + +++ ILID 
Sbjct: 398 FSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDG 457



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 6/215 (2%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  F KK+ +  A + +D   K    PN+    T+ID     G   +  ++   +  + 
Sbjct: 349 LINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEG 408

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +  N+  +N L+       DL+   E+   M+  G+  D+ +YNIL+   C    +  A+
Sbjct: 409 ILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAE 468

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           ++  E+ +L     LK +  TY+T++  +      + AL V+  M      PN +T++ L
Sbjct: 469 KLLNEMFNLG----LKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVL 524

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           I        +E A  L  EML+ G  PN    +I+
Sbjct: 525 IKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV 559



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 98/193 (50%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTL 309
           PN+     +I+  G C   M   A  +++D+  Q +  N+  FN++++    +  ++   
Sbjct: 341 PNIVTYNALIN--GFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGF 398

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +  +M   G++ ++++YN L+   C   +   A+E+  E   +E KG LK DV TY+ +
Sbjct: 399 SLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNE---MENKG-LKGDVVTYNIL 454

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + A K+  +M + G+ PN +T+++L++     G ++ A+++   M +   
Sbjct: 455 IDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERK 514

Query: 430 EPNSQCCNILLQA 442
           +PN    N+L++ 
Sbjct: 515 QPNVVTYNVLIKG 527


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 145/350 (41%), Gaps = 55/350 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +++ + +R F K        + Y    +   SP++ +  T +D     G+  K RA++E+
Sbjct: 376 VVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEE 435

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++++    +   ++ L++  V A   + T E+Y  M+  G + D  +YN ++   C +G 
Sbjct: 436 IKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGK 495

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++  E+K +         V TY ++V   A       A  + E+  S G+  N +
Sbjct: 496 VNKAYQLLEEMKTMGHHPT----VVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQV 551

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +SSLI+     G V++A  + EEM+Q G  PN    N LL   V+A + + A   F+S 
Sbjct: 552 IYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSM 611

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                       + +  TPN +                   TY 
Sbjct: 612 ----------------------------KDLKCTPNQI-------------------TYC 624

Query: 520 ILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           IL+   C    + +      EM+  GL PN I++T +I     SGNV  A
Sbjct: 625 ILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQA 674



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 110/255 (43%), Gaps = 47/255 (18%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + + + V    K   L  A   ++ +K +    N  I  ++ID  G  G   ++  + E+
Sbjct: 516 VTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEE 575

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +T N+Y +N L++  V A ++   L  +++M+ L    +  +Y IL+   C    
Sbjct: 576 MMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLC---- 631

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
                               K+  F      K F    +WQ       +M   G+ PNTI
Sbjct: 632 --------------------KVRKFN-----KAFV---FWQ-------EMQKQGLKPNTI 656

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++++I+  A +G V QA  LFE    +G  P+S   N +++    A +   A++LF   
Sbjct: 657 TYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEET 716

Query: 460 TL------SKTQVAL 468
            L      +KT VAL
Sbjct: 717 RLKGCSIHTKTCVAL 731



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 118/287 (41%), Gaps = 32/287 (11%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L ++  MQ+LG   ++     L++     G    A  +  E+K          D+  Y+ 
Sbjct: 81  LALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMK----SNTFDADIVLYNV 136

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            +  F       MA K   +M + G+ P+ +T++S++     A  +++A+ +FE+M Q  
Sbjct: 137 CIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNR 196

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVA-------LGEDYDGNTDR 478
             P +   N ++     A +FD A+ L    R+     + VA       LG+   G TD+
Sbjct: 197 QVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGK--KGKTDK 254

Query: 479 -ISNMEHKDKQSITNTPNF--------VPNSHYSSFDKRFSFK-----PTTTTYNILMKA 524
            +   E   + ++ N P +           +  ++F  R + K     P   T NI++  
Sbjct: 255 ALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDR 314

Query: 525 CCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            C      +A  +   M     SP+  ++  LID  G  G V+ A +
Sbjct: 315 LCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYR 361



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 79/410 (19%), Positives = 161/410 (39%), Gaps = 60/410 (14%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           +VP  D+ + + +    K   L  A+  ++  +++   P  Y   T+I   G  G + ++
Sbjct: 162 LVPD-DVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEA 220

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKA 333
            ++ E  R++    ++  +N ++       K    L +++ M++   M ++ +YNI++  
Sbjct: 221 YSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKR-DAMPNLPTYNIIIGM 279

Query: 334 CCLAGNTVLAQEIYGEVKHL-----------------------EAKGVLK--------LD 362
            C AGN   A ++   +K                         EA  + +         D
Sbjct: 280 LCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPD 339

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
             T+ +++           A ++ E ML A   PN + ++SLI         E    +++
Sbjct: 340 GATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYK 399

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF------------RSWT-LSKTQVALG 469
           EM+++GC P+    N  +    +A + ++   LF            RS++ L  + V  G
Sbjct: 400 EMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAG 459

Query: 470 ------EDYDGNTDRISNMEHKDKQSITNT--PNFVPNSHYSSFD--KRFSFKPTTTTYN 519
                 E Y    D+   ++ +   ++ +    +   N  Y   +  K     PT  TY 
Sbjct: 460 FARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYG 519

Query: 520 ILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            ++          +A M   E ++ G+  N + ++ LID  G  G V+ A
Sbjct: 520 SVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEA 569



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/269 (20%), Positives = 109/269 (40%), Gaps = 38/269 (14%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           L    +R F ++  + +AL   D  K +    ++ +    ID  G  G    +   + ++
Sbjct: 98  LLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEM 157

Query: 283 RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           ++  +  +   + S+M V   A+ L   +E+++ M++   +    +YN ++     AG  
Sbjct: 158 KANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKF 217

Query: 341 VLAQEIYGEVKHLEAKGVLK---------------------LDVF------------TYS 367
               E Y  ++   AKG +                      L +F            TY+
Sbjct: 218 ---DEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPNLPTYN 274

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            I+ +   A   + A KV++ M  AG+ PN  T + +I+    A  +++A  +FE M   
Sbjct: 275 IIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYK 334

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLF 456
            C P+      L+    +  + D A+R++
Sbjct: 335 VCSPDGATFCSLIDGLGKQGRVDDAYRIY 363



 Score = 39.3 bits (90), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 43/221 (19%), Positives = 87/221 (39%), Gaps = 37/221 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +++ + +  FGK   +  A    +   +   +PN+Y    ++D  G+             
Sbjct: 551 VIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLD--GL------------- 595

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
                             V A ++   L  +++M+ L    +  +Y IL+   C      
Sbjct: 596 ------------------VKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFN 637

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A   + E++    K  LK +  TY+ ++   A +     A  + E   ++G  P++ ++
Sbjct: 638 KAFVFWQEMQ----KQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASY 693

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +++I   + A     A  LFEE    GC  +++ C  LL A
Sbjct: 694 NAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVALLDA 734


>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 113/233 (48%), Gaps = 7/233 (3%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           L    +   G+  ++  ALR +++++       +Y    +I   G  G +  +  ++  +
Sbjct: 180 LVSTMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSM 239

Query: 283 RSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           RS  V  N+  +NSL++  A    D    ++ +  M   G++ D  +YN LL  C   G 
Sbjct: 240 RSWGVYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGM 299

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              AQ++  E   ++ KG+++ D FTY+T +          +A +V E+M S  V P  +
Sbjct: 300 WETAQKLLSE---MDQKGIVR-DAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVV 355

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           T+S++I+ CA A L+E A++L+EEM       +    N ++    +  +FD A
Sbjct: 356 TYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEA 408



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 153/378 (40%), Gaps = 75/378 (19%)

Query: 224 FCNFVREFGKKRDLVSALRAYD--ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +   ++EFG     + A + +D    K++       +  T+I   G  G+   +  ++E 
Sbjct: 144 YIYMLKEFGNTGHFLLATKCFDFIIWKQNGRIAKGKLVSTMIGTLGRLGEINHALRLFES 203

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGN 339
            R +     +Y F+++++    +  F+  ++++++M+  GV  ++ SYN L+ A      
Sbjct: 204 ARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLISYNSLIDAG----- 258

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
                          AKG +  DV     +VK F             ++ML+ G+ P+ +
Sbjct: 259 ---------------AKGEVDFDV-----VVKFF-------------DEMLAEGIVPDRL 285

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF--- 456
           T++SL++ CA+ G+ E A  L  EM Q G   ++   N  L    +  Q D A R+    
Sbjct: 286 TYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEM 345

Query: 457 ---RSWTLSKTQVALGEDYDGNT------DRISNMEHKDKQSIT------NTPNFVPNSH 501
              R W    T V      DG        D ++  E    +SI+      NT   +  + 
Sbjct: 346 SSRRVW---PTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGI-YAK 401

Query: 502 YSSFDKRF---------SFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHIS 550
              FD+             K    TYN L+        Y  V+ L  EM+   + PN ++
Sbjct: 402 LGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLT 461

Query: 551 WTILIDACGGSGNVEGAL 568
           ++ +ID     G  + A+
Sbjct: 462 YSTMIDVYTKGGMFQEAM 479



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 99/198 (50%), Gaps = 12/198 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY- 312
           P +    T+ID C        +  +YE+++ ++++++   +N+++ + A   +F   +  
Sbjct: 352 PTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQ 411

Query: 313 -KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL--EAKGV-LKLDVFTYST 368
            K M+  G+  D+ +YN LL      G       +Y EV+ L  E K   +  +  TYST
Sbjct: 412 CKEMESCGMKRDVVTYNALLSGYGRYG-------MYDEVRRLFEEMKAWNIYPNTLTYST 464

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++ V+     +Q A+ V +D   A +  + + ++S+I++    GLVE ++ L   M++ G
Sbjct: 465 MIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKG 524

Query: 429 CEPNSQCCNILLQACVEA 446
            +PN    N ++ A  ++
Sbjct: 525 IKPNVVTFNSIIDASRQS 542



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/215 (17%), Positives = 98/215 (45%), Gaps = 6/215 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P+     +++ VC   G +  ++ +  ++  + +  + + +N+ ++       +     V
Sbjct: 282 PDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRV 341

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M    V   + +Y+ ++  C  A     A  +Y E+K       + +D  +Y+T+V 
Sbjct: 342 LEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRS----ISVDRVSYNTMVG 397

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           ++A    +  A+   ++M S G+  + +T+++L++     G+ ++   LFEEM      P
Sbjct: 398 IYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYP 457

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           N+   + ++    +   F  A  +++ +  ++ +V
Sbjct: 458 NTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEV 492


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 152/360 (42%), Gaps = 18/360 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKK--HLSSPNMYIC---RTIIDVCGICGDYMKSR 276
           I +   V    K  D VSAL      ++  H+  PN+ I    R    + G C     S 
Sbjct: 215 ITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIK-PNVVIWPLERRTCMINGFCSSGRWSE 273

Query: 277 A---IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILL 331
           A   + E L  + ++ ++  +N+L+N    + KF    E+Y  M   G++    +Y+ ++
Sbjct: 274 AQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMI 333

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C       A+ ++    +L A      D+ T++T++  +  AK     +K+  +M  
Sbjct: 334 DGFCKQNRLDAAEHMF----YLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTE 389

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           AG+  NTIT+++LI+     G +  A  L +EM+ +G  PN   CN LL    +  +   
Sbjct: 390 AGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKD 449

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           A  +F++   SK  +     ++G    +          I           Y     R   
Sbjct: 450 ALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR-GI 508

Query: 512 KPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            P T TYN ++   C      +A  + + M +   SPN +++T LI+    +G V+  L+
Sbjct: 509 VPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLE 568



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 100/211 (47%), Gaps = 19/211 (9%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL---- 318
           G C  GD   ++ + +++ S  V  N+   N+L++   +   LK  LE++K MQK     
Sbjct: 405 GFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDI 464

Query: 319 -------GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
                  GV  D+ +YNIL+      G  + A+E+Y E+ H   +G++  D  TY++++ 
Sbjct: 465 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH---RGIVP-DTITYNSVIH 520

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                     A ++ + M S   +PN +T+++LIN    AG V+  + LF EM + G   
Sbjct: 521 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 580

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           N+     L+    +    + A  +F+    S
Sbjct: 581 NAITYITLIHGFRKVGNINGALDIFQEMMAS 611



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/305 (20%), Positives = 117/305 (38%), Gaps = 41/305 (13%)

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVM 321
           D   + GD ++SR +           ++  F  LM V      L   + +++ M+   V 
Sbjct: 61  DAIDLFGDMVRSRPLP----------SVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVP 110

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            +  S+ IL+K  C       A   +G++  L         V T+ST++           
Sbjct: 111 CNAYSFTILMKCFCSCSKLPFALSTFGKITKLG----FHPTVVTFSTLLHGLCVEDRISE 166

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           AL    D+      PN +T+++L+N     G V +A+ L + ML+ G +PN      ++ 
Sbjct: 167 AL----DLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVD 222

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              +      A  L R            E+       +     + +  + N   F  +  
Sbjct: 223 GMCKMGDTVSALNLLRKM----------EEVSHIKPNVVIWPLERRTCMIN--GFCSSGR 270

Query: 502 YSSFDK-------RFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWT 552
           +S   +       R    P   TYN L+ A   +  ++  + L +EM   G+ P+ I+++
Sbjct: 271 WSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYS 330

Query: 553 ILIDA 557
            +ID 
Sbjct: 331 SMIDG 335


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 139/599 (23%), Positives = 247/599 (41%), Gaps = 78/599 (13%)

Query: 4   VFGSSSSSSSAIVATQTRLYN-HRNKPNKHPVTKLFPLASSSSLSSIPTVHSSQTALLST 62
           VF  S   +S    +QT L + HR + + HP   L P ++S  L  +        +LL  
Sbjct: 105 VFQGSLELASRHPNSQTHLLSLHRFRKSTHPTLPLTPKSASLLLQCLENARLVNDSLLLF 164

Query: 63  VRRDLSSRNDYYAD-MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIV 121
            + D SS++      +   L K GR  +   +++ +  +    S    ++  E+V SG  
Sbjct: 165 NQLDPSSKSPQLCHGLLRVLLKSGRAGDALHVLDEMPQANSGFSVTGEIVFGELVRSG-- 222

Query: 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL----------KN-------EC-Q 163
           +S  +G    VVG++ KL E GV P       GFKL           KN        C  
Sbjct: 223 RSFPDGE---VVGLVAKLGERGVFP------DGFKLTQLVGKLCGDQKNGVAWEVLHCVM 273

Query: 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL 223
           RL  + +      L+  L   R  +K ++E    ++    +P V              + 
Sbjct: 274 RLGGAVDAASCNALLTWLGRGR-DIKRMNELLAEMEKRKIRPSV--------------VT 318

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSS------PNMYICRTIIDVCGIC--GDYMKS 275
           F   V    K R +  AL+ +D  +    S      P++ +  T+ID  G+C  G     
Sbjct: 319 FGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLID--GLCKVGKEEDG 376

Query: 276 RAIYEDLRSQNVTL-NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
            ++ E+++  N+   N   +N L++    A +     E+++ M + GV  ++ + N L+ 
Sbjct: 377 LSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVD 436

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G    A E + E+K    KG LK +  TY+ ++  F        A++  E+MLS+
Sbjct: 437 GLCKHGRVHRAVEFFNEMK---GKG-LKGNAATYTALISAFCGVNNINRAMQCFEEMLSS 492

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G +P+ + + SLI+    AG +  A  +  ++  AG   +  C N+L+    +  + +R 
Sbjct: 493 GCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERV 552

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
           + L         +  +  D       IS         +  T +F   S       +   +
Sbjct: 553 YELLTEME----ETGVKPDTITYNTLIS--------YLGKTGDFATASKVMEKMIKEGLR 600

Query: 513 PTTTTYNILMKACCT--DYYRVKALMNEM-RTVGLSPNHISWTILIDACGGSGNVEGAL 568
           P+  TY  ++ A C+  +      +  EM  T  + PN + + ILIDA   + +V+ A+
Sbjct: 601 PSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAI 659



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 131/318 (41%), Gaps = 23/318 (7%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           PN+    T++D  G+C      RA+  + +++ + +  N   + +L++     +++   +
Sbjct: 426 PNVITLNTLVD--GLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAM 483

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           + ++ M   G   D   Y  L+   C+AG    A  +   V  L+  G   LD   Y+ +
Sbjct: 484 QCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVV---VSKLKLAG-FSLDRSCYNVL 539

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  F   K  +   ++  +M   GV P+TIT+++LI+     G    A  + E+M++ G 
Sbjct: 540 ISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGL 599

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            P+      ++ A       D   ++F     +         Y+   D +      D+ +
Sbjct: 600 RPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDR-A 658

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
           I+   +           K    +P TTTYN ++K         KA  LM+ M      P+
Sbjct: 659 ISLMEDM----------KVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPD 708

Query: 548 HISWTILIDACGGSGNVE 565
           +I+  +L +     G +E
Sbjct: 709 YITMEVLTEWLSAVGEIE 726



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 96/270 (35%), Gaps = 60/270 (22%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           EV   + +LG   D AS N LL       +     E+  E++    K  ++  V T+  +
Sbjct: 267 EVLHCVMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEME----KRKIRPSVVTFGIL 322

Query: 370 VKVFADAKWWQMALKVKEDMLS------AGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
           V     A+    AL+V + +         GV P+ + +++LI+     G  E  + L EE
Sbjct: 323 VNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEE 382

Query: 424 MLQAGC-EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
           M       PN+   N L+    +A  FDRA  LFR       Q                 
Sbjct: 383 MKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQ----------------- 425

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMR 540
                                         P   T N L+   C     +R     NEM+
Sbjct: 426 ------------------------------PNVITLNTLVDGLCKHGRVHRAVEFFNEMK 455

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQC 570
             GL  N  ++T LI A  G  N+  A+QC
Sbjct: 456 GKGLKGNAATYTALISAFCGVNNINRAMQC 485



 Score = 42.4 bits (98), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 41/211 (19%), Positives = 87/211 (41%), Gaps = 7/211 (3%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  F KK+ L          ++    P+     T+I   G  GD+  +  + E +  + 
Sbjct: 539 LISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEG 598

Query: 287 VTLNIYVFNSLMNV--NAHDLKFTLEVYKNM-QKLGVMADMASYNILLKACCLAGNTVLA 343
           +  ++  + ++++   +  ++   ++++  M     V  +   YNIL+ A C   +   A
Sbjct: 599 LRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRA 658

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
             +  ++K    K V + +  TY+ I+K   D K    A ++ + M+     P+ IT   
Sbjct: 659 ISLMEDMK---VKRV-RPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEV 714

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           L    +  G +E+  H  E    +    +SQ
Sbjct: 715 LTEWLSAVGEIEKLKHFVEGYQDSSYPASSQ 745


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 147/342 (42%), Gaps = 56/342 (16%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
            G++  L   L  +D       S +++    +I+  G  G Y  S  + + ++++ ++ +
Sbjct: 151 LGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPS 210

Query: 291 IYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           I  +N+++N  A    D +  L ++  M+  G+  D+ +YN LL AC + G   L  E  
Sbjct: 211 ILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG---LGDEAE 267

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
              + +   G++  D+ TYS +V+ F   +  +    +  +M S G  P+  +++ L+ A
Sbjct: 268 MVFRTMNDGGIVP-DLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEA 326

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
            A +G +++AM +F +M  AGC PN+   ++LL    ++ ++D   +LF     S     
Sbjct: 327 YAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS----- 381

Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
                  NTD                                   P   TYNIL++    
Sbjct: 382 -------NTD-----------------------------------PDAATYNILIEVFGE 399

Query: 528 DYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             Y   V  L ++M    + P+  ++  +I ACG  G  E A
Sbjct: 400 GGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDA 441



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 122/270 (45%), Gaps = 26/270 (9%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKS 275
           V R+   +   +  +G+     ++L   D  K    SP++    T+I+ C   G D+   
Sbjct: 172 VSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGL 231

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLE-VYKNMQKLGVMADMASYNILLKA 333
             ++ ++R + +  +I  +N+L++  A   L    E V++ M   G++ D+ +Y+ L+  
Sbjct: 232 LGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV-- 289

Query: 334 CCLAGNTVLAQEIYGEVKHLE---------AKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
                      E +G+++ LE         A G    D+ +Y+ +++ +A +   + A+ 
Sbjct: 290 -----------ETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMG 338

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           V   M +AG TPN  T+S L+N    +G  +    LF EM  +  +P++   NIL++   
Sbjct: 339 VFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFG 398

Query: 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDG 474
           E   F     LF        +  + E Y+G
Sbjct: 399 EGGYFKEVVTLFHDMVEENIEPDM-ETYEG 427



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 12/199 (6%)

Query: 260 RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG 319
           R +  VC + G+ M S     D+ S NV L  Y         +  +K  + V+  MQ  G
Sbjct: 296 RRLEKVCDLLGE-MASGGSLPDITSYNVLLEAYA-------KSGSIKEAMGVFHQMQAAG 347

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
              +  +Y++LL     +G     ++++ E+K          D  TY+ +++VF +  ++
Sbjct: 348 CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDP----DAATYNILIEVFGEGGYF 403

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           +  + +  DM+   + P+  T+  +I AC   GL E A  + + M      P+S+    +
Sbjct: 404 KEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGV 463

Query: 440 LQACVEACQFDRAFRLFRS 458
           ++A  +A  ++ A   F +
Sbjct: 464 IEAFGQAALYEEALVAFNT 482



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 109/239 (45%), Gaps = 7/239 (2%)

Query: 221 DILFCNFVRE-FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           DI   N + E + K   +  A+  +   +    +PN      ++++ G  G Y   R ++
Sbjct: 316 DITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF 375

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
            +++S N   +   +N L+ V       K  + ++ +M +  +  DM +Y  ++ AC   
Sbjct: 376 LEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKG 435

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A++I   ++++ A  ++      Y+ +++ F  A  ++ AL     M   G  P+
Sbjct: 436 GLHEDARKI---LQYMTANDIVPSSK-AYTGVIEAFGQAALYEEALVAFNTMHEVGSNPS 491

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             T+ SL+ + A  GLV+++  +   ++ +G   N    N  ++A  +  +F+ A + +
Sbjct: 492 IETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTY 550



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 51/207 (24%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNTITWSSLINACANAGLVEQAM 418
           KL +  ++ + K FA    WQ +L++ + M       PN   ++ +I+     GL+++ +
Sbjct: 102 KLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCL 161

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478
            +F+EM   G   +      L+ A     +++ +  L                     DR
Sbjct: 162 EVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELL--------------------DR 201

Query: 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---DYYRVKAL 535
           + N +                             P+  TYN ++ AC     D+  +  L
Sbjct: 202 MKNEK---------------------------ISPSILTYNTVINACARGGLDWEGLLGL 234

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSG 562
             EMR  G+ P+ +++  L+ AC   G
Sbjct: 235 FAEMRHEGIQPDIVTYNTLLSACAIRG 261


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 143/353 (40%), Gaps = 61/353 (17%)

Query: 222 ILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           +++ + +R F   G+K D     + +    +    P++ +  T +D     G+  K R I
Sbjct: 228 VVYTSLIRNFFIHGRKED---GHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMI 284

Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           +ED+RS     ++  ++ L++    A   + T  ++  M++ G   D  +YN ++   C 
Sbjct: 285 FEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCK 344

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           +G    A EI  E+K    +  ++  V TY  IV   A       A  + E+  S G+  
Sbjct: 345 SGKVHKAYEILEEMK----EKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIEL 400

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N + +SSLI+     G +++A  + EEM++ G  PN    N LL A V+A + + A   F
Sbjct: 401 NVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCF 460

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
           +S                                                K     P T 
Sbjct: 461 QSM-----------------------------------------------KEMKCPPNTY 473

Query: 517 TYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           TY+IL+   C    Y +      +M+  GL PN +++T +I      GN+  A
Sbjct: 474 TYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDA 526



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/416 (20%), Positives = 147/416 (35%), Gaps = 102/416 (24%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           S P  Y   T+I   G  G +  +  + E LR +    ++  FNS++       K    L
Sbjct: 49  SVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEAL 108

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +++ M+K     + ++YNI++   CL G    A  I  E++H      L  ++ T + +
Sbjct: 109 SLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEH----ASLFPNLLTVNIM 163

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE------- 422
           V     A+  + A K+ E     G  P+ +T+ SLI+     G V++A  LFE       
Sbjct: 164 VDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGH 223

Query: 423 ----------------------------EMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
                                       E+++ GC+P+    N  +    +A + ++   
Sbjct: 224 NANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRM 283

Query: 455 LF---RSWTL-----SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF- 505
           +F   RS+       S + +  G    G     SN+ H  KQ          N+    F 
Sbjct: 284 IFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFC 343

Query: 506 --------------DKRFSFKPTTTTY------------------------------NIL 521
                          K    +PT  TY                              N++
Sbjct: 344 KSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVV 403

Query: 522 MKACCTDYY-------RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           + +   D +           ++ EM   GL+PN  +W  L+DA   +  +  AL C
Sbjct: 404 LYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVC 459



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 106/241 (43%), Gaps = 13/241 (5%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           V  F K   +  A    +  K+    P +     I+D         ++  ++E+ +S+ +
Sbjct: 339 VDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGI 398

Query: 288 TLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            LN+ +++SL++    V   D  +   + + M K G+  ++ ++N LL A   A     A
Sbjct: 399 ELNVVLYSSLIDGFGKVGRIDEAYL--ILEEMMKKGLTPNVYTWNSLLDALVKAEEINEA 456

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
              +  +K ++       + +TYS ++      + +  A    +DM   G+ PN +T+++
Sbjct: 457 LVCFQSMKEMKCPP----NTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTT 512

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           +I+  A  G +  A  LFE     G  P++   N L++    A   +RA   +++  L  
Sbjct: 513 MISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNA---NRAMEAYQAGWLDT 569

Query: 464 T 464
           T
Sbjct: 570 T 570



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 86/183 (46%), Gaps = 7/183 (3%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            + +L++Q +  +   + S++ V   A  L    E++  M+    +    +YN ++    
Sbjct: 5   FFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYG 64

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            AG     ++ Y  ++ L  +G +   V ++++I+      +    AL + E ++     
Sbjct: 65  SAGRF---EDAYKLLERLRERGCIP-SVVSFNSILTCLGKKRKVDEALSLFE-VMKKDAE 119

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN+ T++ +I+     G VE+A  + +EM  A   PN    NI++    +A + + A+++
Sbjct: 120 PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKI 179

Query: 456 FRS 458
           F S
Sbjct: 180 FES 182


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 155/348 (44%), Gaps = 23/348 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
           F   +  +G+      A++ +D+ K +   PN+     +ID CG  G ++ K   I++ +
Sbjct: 228 FSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGM 287

Query: 283 RSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            S  V  +   FNSL+ V +     +    ++  M   G+  D+ +YN LL A C  G  
Sbjct: 288 LSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQM 347

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
            LA EI  E   +  K +L  +V TYST++  +A       AL +  +M   GV  + ++
Sbjct: 348 DLAFEIMSE---MPTKNILP-NVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVS 403

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +++L++  A  G  EQA+ + +EM  AG   +    N LL    +  ++D   R+F    
Sbjct: 404 YNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMK 463

Query: 461 LSKTQVALGEDYDGNTDRISNME-HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
             +    L   Y    D  S    +K+   +           +  F K+   K     Y+
Sbjct: 464 RGRVSPNL-LTYSTLIDVYSKGGLYKEAMEV-----------FREF-KQAGLKADVVLYS 510

Query: 520 ILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            L+ A C +     +  L++EM   G+ PN +++  +IDA G S + +
Sbjct: 511 ALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQ 558



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/232 (18%), Positives = 102/232 (43%), Gaps = 26/232 (11%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R D++  N  +  +GK+       R ++  K+   SPN+    T+IDV    G Y ++  
Sbjct: 433 RKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAME 492

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++ + +   +  ++ ++++L++    +  ++ ++ +   M K G+  ++ +YN ++ A  
Sbjct: 493 VFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFG 552

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY----------STIVKVFADAKWWQMA--- 382
            + +     +  GE   L+ + +  + V             + I+++F      +     
Sbjct: 553 RSASAQCVVDDSGETTALQVESLSSIVVQEAIESQAADKEDNRIIEIFGKLAAEKACEAK 612

Query: 383 ----------LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
                     L V + M    + PN +T+S+++NAC+     E A  L EE+
Sbjct: 613 NSGKQEILCILGVFQKMHELKIKPNVVTFSAILNACSRCDSFEDASMLLEEL 664


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 156/345 (45%), Gaps = 38/345 (11%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           GK +D    L+  DA  K         C  II VC   GD   + A++E+   + +  +I
Sbjct: 307 GKIQDASRILK--DAKFKGFVPDEFTYCSLIIGVCQD-GDIDHALALFEEALGKGLKPSI 363

Query: 292 YVFNSLM-NVNAHDLKF-TLEVYKNMQKLGVMADMASYNILLKACCLAG-----NTVLAQ 344
            ++N+L+  ++   L    L++  +M K G+  D+ +YN+++   C  G     N +L  
Sbjct: 364 VLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNA 423

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
            I        AKG L  D+FT++T++  +        A+ + + M S GVTP+ IT++S+
Sbjct: 424 AI--------AKGYLP-DIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSI 474

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWTL 461
           +N    A   E  M  F+ +++ GC PN    NIL+++  +A +   A  L    R+  L
Sbjct: 475 LNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGL 534

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
               V+ G    G  +   N +  +   +           +   ++++    T  TYNI+
Sbjct: 535 IPDPVSFGTVISGFCN---NGDLDEAYQL-----------FRRMEQQYRICHTVATYNIM 580

Query: 522 MKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           + A     D    + L +EM   G  P+  ++ ++ID     GNV
Sbjct: 581 INAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNV 625



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 114/262 (43%), Gaps = 12/262 (4%)

Query: 207 VNLAIRYACIVPRADILFCNF---VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263
           V L +++  I P      C F   ++ F + +  ++ALR  +         N  +  T+I
Sbjct: 133 VYLRMKHEGIAPDV----CTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVI 188

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVM 321
                    +++  ++  +    +  +I  FN LM++      L+   ++   + K GV 
Sbjct: 189 SGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVC 248

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV---LKLDVFTYSTIVKVFADAKW 378
            ++ ++NI ++  C  G    A     E ++   K V   L+ D FTY+TI+  ++    
Sbjct: 249 PNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGK 308

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            Q A ++ +D    G  P+  T+ SLI      G ++ A+ LFEE L  G +P+    N 
Sbjct: 309 IQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNT 368

Query: 439 LLQACVEACQFDRAFRLFRSWT 460
           L++   +     +A +L    +
Sbjct: 369 LIKGLSQQGLVLKALQLMNDMS 390



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 74/372 (19%), Positives = 138/372 (37%), Gaps = 40/372 (10%)

Query: 234 KRDLVSALRAYDASKKHLSSPNMYIC-RTIIDVCGICGDYMKSRAIYEDLR---SQNVTL 289
           ++D + AL  +++ KK     + ++  + +I+  G  G++     +  ++R     ++  
Sbjct: 17  QKDPLKALSIFNSVKKEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVDNSLLE 76

Query: 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
            +YV           ++  ++V++ M        + SYN ++      G    A ++Y  
Sbjct: 77  GVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLR 136

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +KH   +G+   DV T++  +K F   K    AL++  +M S G   N + + ++I+   
Sbjct: 137 MKH---EGIAP-DVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFY 192

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL-------------- 455
                 +A  LF +ML+ G  P+    N L+    +        +L              
Sbjct: 193 EENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLF 252

Query: 456 -FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF--------- 505
            F  +     +  + E  +       N  HK         +F  N+    +         
Sbjct: 253 TFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDA 312

Query: 506 -----DKRF-SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
                D +F  F P   TY  L+   C   D     AL  E    GL P+ + +  LI  
Sbjct: 313 SRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKG 372

Query: 558 CGGSGNVEGALQ 569
               G V  ALQ
Sbjct: 373 LSQQGLVLKALQ 384



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 43/215 (20%), Positives = 90/215 (41%), Gaps = 38/215 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P+++   T+ID  G C       AI   + + S  VT ++  +NS++N    A   +  +
Sbjct: 431 PDIFTFNTLID--GYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVM 488

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH----------------- 352
           E +K + + G + ++ +YNIL+++ C A     A ++  E+++                 
Sbjct: 489 ETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGF 548

Query: 353 ---------------LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
                          +E +  +   V TY+ ++  F++     MA K+  +M   G  P+
Sbjct: 549 CNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPD 608

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           + T+  +I+     G V        + ++ G  P+
Sbjct: 609 SYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPS 643


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 144/353 (40%), Gaps = 55/353 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +L  + +  F K  D   AL      +    +P       +I   G  G   ++ AI+E+
Sbjct: 282 LLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEE 341

Query: 282 LRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++   +   I  FN+L+   A    LK    +   M+K G+  D  +Y +L+ A    G 
Sbjct: 342 MKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGR 401

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ +   +K +EA+ V + + F +S I+  + D   WQ   +V  +M ++ V P+  
Sbjct: 402 WESARHL---LKQMEARNV-QPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRH 457

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++ +I+       ++ AM  ++ ML  G EP+    N L+    +    DRA  LF   
Sbjct: 458 FYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEE- 516

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                 M+ +                         + P  TTYN
Sbjct: 517 ----------------------MQER------------------------GYLPCPTTYN 530

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           I++ +      +  VK L+ +M++ GL PN +++T L+D  G SG    A+ C
Sbjct: 531 IMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDC 583



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 109/212 (51%), Gaps = 18/212 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA----HDLKFTL 309
           P+ +    +ID  G       +   Y+ + S+ +  ++  +N+L++ +     HD     
Sbjct: 454 PDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDR--AA 511

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK----HLEAKGVLKLDVFT 365
           E+++ MQ+ G +    +YNI++       N++  QE + EVK     ++++G+L  +V T
Sbjct: 512 ELFEEMQERGYLPCPTTYNIMI-------NSLGEQEKWDEVKILLGKMQSQGLLP-NVVT 563

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+T+V ++  +  +  A+   E M SAG+ P+   +++LINA A  GL EQA++ +  M+
Sbjct: 564 YTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMI 623

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             G  P+    N L+ A  E  +   AF + +
Sbjct: 624 SDGLRPSLLALNSLINAFGEDRRDIEAFSILQ 655



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 138/319 (43%), Gaps = 46/319 (14%)

Query: 274 KSRAIYED-LRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNIL 330
           +S  +YE  + SQ  TL    +N+L+   A  +DL+  L +   M++ G  +D  +Y+++
Sbjct: 191 RSEKLYEAFILSQKQTLTPLTYNALIGACARNNDLEKALNLMSRMRQDGFQSDFINYSLI 250

Query: 331 LKACCLAG--NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           +++       +  L Q++Y E++       ++LD    + I+  FA A     AL     
Sbjct: 251 IQSLTRTNKIDIPLLQKLYEEIE----SDKIELDGLLLNDIILGFAKAGDPNRALYFLSM 306

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           + ++G+ P T T+ ++I+A  N G  E+A  +FEEM + G +P  +  N LL+       
Sbjct: 307 VQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGS 366

Query: 449 FDRAFRLFRSWTLSKTQVALGE-------DYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              A  +     + K+ ++  E       D   N  R  +  H  KQ      N  PN+ 
Sbjct: 367 LKEAESIISE--MEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQ--MEARNVQPNTF 422

Query: 502 YSS-----------FDKRF---------SFKPTTTTYNILM----KACCTDYYRVKALMN 537
             S           + K F         + KP    YN+++    K  C D+       +
Sbjct: 423 IFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDH--AMETYD 480

Query: 538 EMRTVGLSPNHISWTILID 556
            M + G+ P+ ++W  LID
Sbjct: 481 RMLSEGIEPDVVTWNTLID 499



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 111/251 (44%), Gaps = 15/251 (5%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           + D  F N  +  FGK   L  A+  YD        P++    T+ID     G + ++  
Sbjct: 453 KPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAE 512

Query: 278 IYEDLRSQN-----VTLNIYVFNSLMNVNAHD-LKFTLEVYKNMQKLGVMADMASYNILL 331
           ++E+++ +       T NI + NSL      D +K  L     MQ  G++ ++ +Y  L+
Sbjct: 513 LFEEMQERGYLPCPTTYNIMI-NSLGEQEKWDEVKILL---GKMQSQGLLPNVVTYTTLV 568

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
               + G++    +    ++ +++ G LK     Y+ ++  FA     + A+     M+S
Sbjct: 569 D---IYGHSGRFNDAIDCLEAMKSAG-LKPSATMYNALINAFAQRGLSEQAVNAYRVMIS 624

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+ P+ +  +SLINA        +A  + + M +   +P+      L++A +   +FD+
Sbjct: 625 DGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIRVDKFDK 684

Query: 452 AFRLFRSWTLS 462
              ++    LS
Sbjct: 685 VPAVYEEMILS 695



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/197 (18%), Positives = 92/197 (46%), Gaps = 8/197 (4%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307
           + +L  P  Y    +I+  G    + + + +   ++SQ +  N+  + +L+++  H  +F
Sbjct: 520 RGYLPCPTTY--NIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRF 577

Query: 308 --TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
              ++  + M+  G+      YN L+ A    G   L+++     + + + G L+  +  
Sbjct: 578 NDAIDCLEAMKSAGLKPSATMYNALINAFAQRG---LSEQAVNAYRVMISDG-LRPSLLA 633

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
            ++++  F + +    A  + + M    V P+ +T+++L+ A       ++   ++EEM+
Sbjct: 634 LNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIRVDKFDKVPAVYEEMI 693

Query: 426 QAGCEPNSQCCNILLQA 442
            +GC P+ +   +L  A
Sbjct: 694 LSGCTPDGKARAMLRSA 710


>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 821

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/348 (19%), Positives = 144/348 (41%), Gaps = 54/348 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  F K+ +   AL+ +   K+    PN Y   ++I      G   ++ AI+E+
Sbjct: 424 VTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEE 483

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  +++ FN+L++       +    E+Y  M+KL +  D  ++N L+ A   A N
Sbjct: 484 MTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKN 543

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           ++ A E  G++  +     L  D  +Y+ ++     +  +  A +V E+M + G+ P T+
Sbjct: 544 SIRALEAMGDMTEIYG---LTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTV 600

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+++LI   + +  +  +  + + MLQ G  P++   N L+ AC        AF +   +
Sbjct: 601 TFNALIYGASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKF 660

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                                          K+    P   T+N
Sbjct: 661 -----------------------------------------------KQLGVHPDNVTFN 673

Query: 520 ILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
             + A        ++  L++EM + G+SP+ ++   ++  CG  G ++
Sbjct: 674 TFIDAVGKLDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGKID 721



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 130/296 (43%), Gaps = 56/296 (18%)

Query: 282 LRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMA-DMASYNILLK--ACCL 336
           +R +++  NIY +++L+            L  ++ M ++  +A +  +YN ++K  + C 
Sbjct: 338 MREEHIQPNIYTYSALIETLGKGGLCVRALSQFRRMSRIDNIAPNTVTYNAVIKIVSRCK 397

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
             +          ++ +  KG +  DV TY+T++  F+     + ALK+ ++M  A V P
Sbjct: 398 RNDCGGITRAMSLLREMATKGCIP-DVVTYATLIDAFSKRMEPERALKLFQEMKEANVKP 456

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N   +SSLI+A   AG VE+A+ +FEEM      P+    N L+    +  Q D+AF ++
Sbjct: 457 NNYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIY 516

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
                               DR+                           ++   +P   
Sbjct: 517 --------------------DRM---------------------------RKLQIQPDRI 529

Query: 517 TYNILMKACCTDYYRVKAL--MNEMRTV-GLSPNHISWTILIDACGGSGNVEGALQ 569
           T+N L+ A       ++AL  M +M  + GL+P+  S+  LIDACG SG+   A +
Sbjct: 530 TFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYE 585



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 116/237 (48%), Gaps = 13/237 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAY-DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           I F   +   GK ++ + AL A  D ++ +  +P+ +    +ID CG  GD+ K+  ++E
Sbjct: 529 ITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFE 588

Query: 281 DLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++R++ +      FN+L+     +HDL  + ++   M + G+  D  + N L+ AC    
Sbjct: 589 EMRTKGIRPCTVTFNALIYGASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQ 648

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           +   A E+  + K L   GV   D  T++T +         +   ++  +M S G++P+ 
Sbjct: 649 DLSTAFEVLEKFKQL---GV-HPDNVTFNTFIDAVGKLDSSEKMFELLSEMESRGISPSK 704

Query: 399 ITWSSLINACANAG---LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           +T ++++  C   G   L+E+  H+F E      EP+S   ++L++  V     D+A
Sbjct: 705 VTLNTIVGCCGRRGKIDLMERGFHMFHE---KRLEPDSVTFSLLIENYVSHHLLDKA 758


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 128/320 (40%), Gaps = 59/320 (18%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++ +  T +D     GD  K RAI+ED++      ++  ++ L++    A   + T  +
Sbjct: 22  PDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSI 81

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYSTI 369
           +  M++ G   D  +YN ++   C +G    A E   E  VKH+         V TY +I
Sbjct: 82  FHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPT------VATYGSI 135

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +   A       A  + E+  S G+  N I +SSLI+     G +++A  + EEM++ G 
Sbjct: 136 IDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGL 195

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            PN    N L+ A V+A + + A   F+S                               
Sbjct: 196 APNVYTWNSLMDALVKAEEINEALICFQSM------------------------------ 225

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN 547
                            K     P T TY+IL+   C    Y +      EM+  GL PN
Sbjct: 226 -----------------KEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPN 268

Query: 548 HISWTILIDACGGSGNVEGA 567
            +++T +I      GN+  A
Sbjct: 269 VVTYTTMISGLAKVGNITDA 288



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 11/236 (4%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP     + + +    K   L  A   ++ +K      N+ +  ++ID  G  G   ++ 
Sbjct: 125 VPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAY 184

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            I E++  + +  N+Y +NSLM+  V A ++   L  +++M+++    +  +Y+IL+   
Sbjct: 185 LILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGL 244

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C       A   + E++    K  L  +V TY+T++   A       A  + E   + G 
Sbjct: 245 CRVQKYNKAFVFWQEMQ----KQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGG 300

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-----CVE 445
            P+  ++++LI   ++A    +A H+FEE    GC  N + C  LL A     C+E
Sbjct: 301 IPDAASFNALIEGMSHANRAIEAYHVFEETRLRGCRINVKACISLLDALNKAECIE 356



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 111/235 (47%), Gaps = 19/235 (8%)

Query: 242 RAYDASK----KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           +AY+A +    KH+  P +    +IID         ++  ++E+ +S+ + LN+ V++SL
Sbjct: 112 KAYEALEEMKVKHVP-PTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSL 170

Query: 298 MN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           ++    V   D  +   + + M K G+  ++ ++N L+ A       V A+EI   +   
Sbjct: 171 IDGFGKVGRIDEAYL--ILEEMMKKGLAPNVYTWNSLMDA------LVKAEEINEALICF 222

Query: 354 EAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
           ++   +K   + +TYS ++      + +  A    ++M   G+ PN +T++++I+  A  
Sbjct: 223 QSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKV 282

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           G +  A  LFE     G  P++   N L++    A +   A+ +F    L   ++
Sbjct: 283 GNITDACSLFERFKANGGIPDAASFNALIEGMSHANRAIEAYHVFEETRLRGCRI 337



 Score = 42.0 bits (97), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 24/191 (12%)

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           ED+   G  P+  ++S LI+    AG   +   +F  M Q G   +++  N ++    ++
Sbjct: 48  EDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKS 107

Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
            + D+A+       +      +   Y    D ++ ++  D+              Y  F+
Sbjct: 108 GKVDKAYEALEEMKVKHVPPTVA-TYGSIIDGLAKIDRLDEA-------------YMLFE 153

Query: 507 KRFSFKPTTTTYNILMKACCTDYY----RVKA---LMNEMRTVGLSPNHISWTILIDACG 559
           +    K      N+++ +   D +    R+     ++ EM   GL+PN  +W  L+DA  
Sbjct: 154 EA---KSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALV 210

Query: 560 GSGNVEGALQC 570
            +  +  AL C
Sbjct: 211 KAEEINEALIC 221


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 166/382 (43%), Gaps = 44/382 (11%)

Query: 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250
           +D   R  Q    +   +L  ++ C+    +  F   +  + +   L  A R     K+ 
Sbjct: 108 MDAYGRTKQWTEAENTFHLMKKFQCLP--TETSFNVLMAAYSRGGQLERAERVLHEMKES 165

Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFT 308
             SP +    T ++V    G +  +  ++ +++++ V   +  F  ++N+   AH     
Sbjct: 166 NCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKA 225

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
             ++++M+K      + +Y  L+ A    GN V A+EI+ E   L++ G +  D++TY+ 
Sbjct: 226 EHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAE---LQSVGFVP-DIYTYNA 281

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +++ ++       A +V E ML AGV  + ++++ LI+A   AGL+  A  +++ M + G
Sbjct: 282 LLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVG 341

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD-----------GNTD 477
            +P  +   +LL A V+A +   A    R         ++G + D           GN+ 
Sbjct: 342 FKPTMKSHILLLSAFVKAGRVTDAENFVRRLE------SMGVEPDTFMFNSLLGAYGNSG 395

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKAL 535
           R+  ME                S Y S       KP   T N L+       Y  R + +
Sbjct: 396 RMDKME----------------SLYESMQGSVC-KPDIITLNTLINVYAQGGYIERAEEI 438

Query: 536 MNEMRTVGLSPNHISWTILIDA 557
            N + + G +P+ +SWT L+ A
Sbjct: 439 FNSLESKGFTPDVMSWTSLMGA 460



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 117/295 (39%), Gaps = 56/295 (18%)

Query: 278 IYE-DLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKAC 334
           IYE  L+      ++  FN LM+      ++T     +  M+K   +    S+N+L+ A 
Sbjct: 87  IYEWILQGSMFKPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAY 146

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A+ +  E+K       L     TY+T ++V   +  WQ+A  V  +M + GV
Sbjct: 147 SRGGQLERAERVLHEMKESNCSPGL----VTYNTYLEVLNKSGSWQLAEDVFREMQNRGV 202

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P   T++ +IN    A    +A HLF+ M +A C P+      L+ A        RA  
Sbjct: 203 PPAVNTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEE 262

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           +F                             + QS+     FVP+ +             
Sbjct: 263 IF----------------------------AELQSV----GFVPDIY------------- 277

Query: 515 TTTYNILMKACCTDYYR--VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             TYN L++A     +    K +   M   G+  +H+S+ ILIDA G +G +  A
Sbjct: 278 --TYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDA 330


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 36/291 (12%)

Query: 291 IYVFNSLMNVNAHDLKFTLE--VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           ++ +N+++N      K+     V   M K+G+  D A+YNILL  CC   N + A+ I+ 
Sbjct: 428 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFD 487

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E   + ++GV+  D+ ++S ++ + +       ALK   DM +AG+ P+ + ++ LI   
Sbjct: 488 E---MPSQGVVP-DLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGF 543

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT-------- 460
              G++ +A+ + +EML+ GC  +    N +L    +      A  LF   T        
Sbjct: 544 CRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDF 603

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
            + T +  G   DGN ++   +                   +    +R + KP   TYN 
Sbjct: 604 YTFTTLINGYXKDGNMNKAVTL-------------------FEMMIQR-NLKPDVVTYNT 643

Query: 521 LMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L+   C  ++  +V  L N+M +  + PNHIS+ ILI+     G V  A +
Sbjct: 644 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFR 694



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 148/339 (43%), Gaps = 24/339 (7%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVF 294
           L  AL+ +   K    +P+  I   +I   G C + + S A  + +++  Q   L++  +
Sbjct: 514 LDQALKYFRDMKNAGLAPDNVIYTILIG--GFCRNGVMSEALKVRDEMLEQGCXLDVVTY 571

Query: 295 NSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           N+++N    +  L    E++  M + GV  D  ++  L+      GN   A  ++     
Sbjct: 572 NTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLF----E 627

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +  +  LK DV TY+T++  F      +   ++  DM+S  + PN I++  LIN   N G
Sbjct: 628 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 687

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            V +A  L++EM++ G E     CN +++    A    +A   F S  L K  V  G  Y
Sbjct: 688 CVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE-FLSNMLLKGIVPDGITY 746

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRV 532
           +   +     E+ D+       N + NS            P   TYN+++          
Sbjct: 747 NTLINGFIKEENMDRAFA--LVNKMENS---------GLLPDVITYNVILNGFSRQGRMQ 795

Query: 533 KA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +A  +M +M   G++P+  ++T LI+      N++ A +
Sbjct: 796 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFR 834



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 135/312 (43%), Gaps = 65/312 (20%)

Query: 272 YMKSRAIYED------LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMAD 323
           Y+++R + E       L+S+ + ++I   NSL+   V    +    E+Y+ + + GV  +
Sbjct: 298 YVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVN 357

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           + + NI++ A C        +     +  +E KGV   DV TY+T++  +      + A 
Sbjct: 358 VYTLNIMINALC---KNQKIENTKSFLSDMEEKGVFP-DVVTYNTLINAYCRQGLLEEAF 413

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           ++ + M   G+ P   T++++IN     G   +A  + +EML+ G  P++   NILL   
Sbjct: 414 ELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL--- 470

Query: 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
           VE C+ D                        + +RI   +    Q +   P+ V      
Sbjct: 471 VECCRNDNMM---------------------DAERI--FDEMPSQGV--VPDLV------ 499

Query: 504 SFDKRFSFKPTTTTYNILMKACCTD----YYRVKALMNEMRTVGLSPNHISWTILIDACG 559
           SF         +    +L K  C D    Y+R      +M+  GL+P+++ +TILI    
Sbjct: 500 SF---------SALIGLLSKNGCLDQALKYFR------DMKNAGLAPDNVIYTILIGGFC 544

Query: 560 GSGNVEGALQCR 571
            +G +  AL+ R
Sbjct: 545 RNGVMSEALKVR 556



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 109/236 (46%), Gaps = 10/236 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYM-KSRAIYED 281
           F   +  + K  ++  A+  ++   +    P++    T+ID  G C G  M K   ++ D
Sbjct: 606 FTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLID--GFCKGSEMEKVNELWND 663

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S+ +  N   +  L+N   N   +     ++  M + G  A + + N ++K  C AGN
Sbjct: 664 MISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN 723

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            V A E    + ++  KG++  D  TY+T++  F   +    A  +   M ++G+ P+ I
Sbjct: 724 AVKADEF---LSNMLLKGIVP-DGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVI 779

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           T++ ++N  +  G +++A  +  +M++ G  P+      L+   V       AFR+
Sbjct: 780 TYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRV 835


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 56/342 (16%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
            G++  L   L  +D       S +++    +I+  G  G Y  S  + + +++  ++ +
Sbjct: 151 LGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPS 210

Query: 291 IYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           I  +N+++N  A    D +  L ++  M+  G+  D+ +YN LL AC + G   L  E  
Sbjct: 211 ILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG---LGDEAE 267

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
              + +   G++  D+ TYS +V+ F   +  +    +  +M S G  P+  +++ L+ A
Sbjct: 268 MVFRTMNDGGIVP-DLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEA 326

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
            A +G +++AM +F +M  AGC PN+   ++LL    ++ ++D   +LF     S     
Sbjct: 327 YAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS----- 381

Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
                  NTD                                   P   TYNIL++    
Sbjct: 382 -------NTD-----------------------------------PDAATYNILIEVFGE 399

Query: 528 DYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             Y   V  L ++M    + P+  ++  +I ACG  G  E A
Sbjct: 400 GGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDA 441



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 116/252 (46%), Gaps = 25/252 (9%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKS 275
           V R+   +   +  +G+     ++L   D  K    SP++    T+I+ C   G D+   
Sbjct: 172 VSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGL 231

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLE-VYKNMQKLGVMADMASYNILLKA 333
             ++ ++R + +  +I  +N+L++  A   L    E V++ M   G++ D+ +Y+ L+  
Sbjct: 232 LGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV-- 289

Query: 334 CCLAGNTVLAQEIYGEVKHLE---------AKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
                      E +G+++ LE         A G    D+ +Y+ +++ +A +   + A+ 
Sbjct: 290 -----------ETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMG 338

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           V   M +AG TPN  T+S L+N    +G  +    LF EM  +  +P++   NIL++   
Sbjct: 339 VFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFG 398

Query: 445 EACQFDRAFRLF 456
           E   F     LF
Sbjct: 399 EGGYFKEVVTLF 410



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 109/239 (45%), Gaps = 7/239 (2%)

Query: 221 DILFCNFVRE-FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           DI   N + E + K   +  A+  +   +    +PN      ++++ G  G Y   R ++
Sbjct: 316 DITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF 375

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
            +++S N   +   +N L+ V       K  + ++ +M +  +  DM +Y  ++ AC   
Sbjct: 376 LEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKG 435

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A++I   ++++ A  ++      Y+ +++ F  A  ++ AL     M   G  P+
Sbjct: 436 GLHEDARKI---LQYMTANDIVP-SSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPS 491

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             T+ SL+ + A  GLV+++  +   ++ +G   N    N  ++A  +  +F+ A + +
Sbjct: 492 IETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTY 550



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 117/267 (43%), Gaps = 51/267 (19%)

Query: 304 DLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
           D + +L ++K MQ+ +    +   Y I++      G      E++ E   + ++GV +  
Sbjct: 120 DWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDE---MPSQGVSR-S 175

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL-VEQAMHLF 421
           VF+Y+ ++  +     ++ +L++ + M +  ++P+ +T++++INACA  GL  E  + LF
Sbjct: 176 VFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLF 235

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM   G +P+    N LL AC      D A  +FR+              DG       
Sbjct: 236 AEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMN------------DGGI----- 278

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRT 541
                       P+    SH               T+  L +       +V  L++EM +
Sbjct: 279 -----------VPDLTTYSHL------------VETFGKLRR-----LEKVSDLLSEMAS 310

Query: 542 VGLSPNHISWTILIDACGGSGNVEGAL 568
            G  P+  S+ +L++A   SG+++ A+
Sbjct: 311 GGSLPDITSYNVLLEAYAKSGSIKEAM 337


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 36/291 (12%)

Query: 291 IYVFNSLMNVNAHDLKFTLE--VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           ++ +N+++N      K+     V   M K+G+  D A+YNILL  CC   N + A+ I+ 
Sbjct: 324 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFD 383

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E   + ++GV+  D+ ++S ++ + +       ALK   DM +AG+ P+ + ++ LI   
Sbjct: 384 E---MPSQGVVP-DLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGF 439

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT-------- 460
              G++ +A+ + +EML+ GC  +    N +L    +      A  LF   T        
Sbjct: 440 CRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDF 499

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
            + T +  G   DGN ++   +                   +    +R + KP   TYN 
Sbjct: 500 YTFTTLINGYSKDGNMNKAVTL-------------------FEMMIQR-NLKPDVVTYNT 539

Query: 521 LMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L+   C  ++  +V  L N+M +  + PNHIS+ ILI+     G V  A +
Sbjct: 540 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFR 590



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 148/339 (43%), Gaps = 24/339 (7%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVF 294
           L  AL+ +   K    +P+  I   +I   G C + + S A  + +++  Q   L++  +
Sbjct: 410 LDQALKYFRDMKNAGLAPDNVIYTILIG--GFCRNGVMSEALKVRDEMLEQGCVLDVVTY 467

Query: 295 NSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           N+++N    +  L    E++  M + GV  D  ++  L+      GN   A  ++     
Sbjct: 468 NTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLF----E 523

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +  +  LK DV TY+T++  F      +   ++  DM+S  + PN I++  LIN   N G
Sbjct: 524 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 583

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            V +A  L++EM++ G E     CN +++    A    +A   F S  L K  V  G  Y
Sbjct: 584 CVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE-FLSNMLLKGIVPDGITY 642

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRV 532
           +   +     E+ D+       N + NS            P   TYN+++          
Sbjct: 643 NTLINGFIKEENMDRAFA--LVNKMENS---------GLLPDVITYNVILNGFSRQGRMQ 691

Query: 533 KA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +A  +M +M   G++P+  ++T LI+      N++ A +
Sbjct: 692 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFR 730



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 135/312 (43%), Gaps = 65/312 (20%)

Query: 272 YMKSRAIYED------LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMAD 323
           Y+++R + E       L+S+ + ++I   NSL+   V    +    E+Y+ + + GV  +
Sbjct: 194 YVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVN 253

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           + + NI++ A C        +     +  +E KGV   DV TY+T++  +      + A 
Sbjct: 254 VYTLNIMINALC---KNQKIENTKSFLSDMEEKGVFP-DVVTYNTLINAYCRQGLLEEAF 309

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           ++ + M   G+ P   T++++IN     G   +A  + +EML+ G  P++   NILL   
Sbjct: 310 ELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL--- 366

Query: 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
           VE C+ D                        + +RI   +    Q +   P+ V      
Sbjct: 367 VECCRNDNMM---------------------DAERI--FDEMPSQGV--VPDLV------ 395

Query: 504 SFDKRFSFKPTTTTYNILMKACCTD----YYRVKALMNEMRTVGLSPNHISWTILIDACG 559
           SF         +    +L K  C D    Y+R      +M+  GL+P+++ +TILI    
Sbjct: 396 SF---------SALIGLLSKNGCLDQALKYFR------DMKNAGLAPDNVIYTILIGGFC 440

Query: 560 GSGNVEGALQCR 571
            +G +  AL+ R
Sbjct: 441 RNGVMSEALKVR 452



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 109/236 (46%), Gaps = 10/236 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYM-KSRAIYED 281
           F   +  + K  ++  A+  ++   +    P++    T+ID  G C G  M K   ++ D
Sbjct: 502 FTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLID--GFCKGSEMEKVNELWND 559

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S+ +  N   +  L+N   N   +     ++  M + G  A + + N ++K  C AGN
Sbjct: 560 MISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN 619

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            V A E    + ++  KG++  D  TY+T++  F   +    A  +   M ++G+ P+ I
Sbjct: 620 AVKADEF---LSNMLLKGIVP-DGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVI 675

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           T++ ++N  +  G +++A  +  +M++ G  P+      L+   V       AFR+
Sbjct: 676 TYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRV 731


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 160/328 (48%), Gaps = 39/328 (11%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVNAHDLKF-TL 309
           P+ +   ++I+  G+C  GD  ++ A++ +   +    +I ++N+L+  ++   L    L
Sbjct: 354 PDEFTYSSLIN--GLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQAL 411

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++ K+M + G   D+ +YN+++   C  G    A  I  +     AKG +  D+FT++T+
Sbjct: 412 QLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAI---AKGCIP-DIFTFNTL 467

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +   +    A+++ + MLS G+TP+ IT+++L+N    A  ++  +  F+ ML+ GC
Sbjct: 468 IDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGC 527

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVAL-----GEDYDGNTDRISN 481
            PN    NIL+++  +  +   A  LF+      L+   V L     G   +G  D+   
Sbjct: 528 TPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYE 587

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEM 539
           +                   + + +K + F  +T  +NI++ A C   +    + L ++M
Sbjct: 588 L-------------------FVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKM 628

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
                +P++ ++ ++ID+   +GN++ A
Sbjct: 629 GGSDCAPDNYTYRVMIDSYCKTGNIDLA 656



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 161/410 (39%), Gaps = 70/410 (17%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +C  +  F K+   + A   +D   K    P++     +I V    G+  +S  ++  + 
Sbjct: 184 YCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVM 243

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            + V  N++ FN  +        +     + +++   G+  D+ SYN L+   C     V
Sbjct: 244 KRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLV 303

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A E Y    H      ++ + FTY+TI+  F  A   Q A K+  D +  G  P+  T+
Sbjct: 304 EA-ECY---LHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTY 359

Query: 402 SSLINACAN-----------------------------------AGLVEQAMHLFEEMLQ 426
           SSLIN   N                                    GLV QA+ L ++M++
Sbjct: 360 SSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMME 419

Query: 427 AGCEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
            GC P+    N+++   C   C  D    L  +  ++K  +     ++   D      + 
Sbjct: 420 HGCSPDIWTYNLVVNGLCKMGCLSDANGIL--NDAIAKGCIPDIFTFNTLIDGYCKQRNM 477

Query: 486 DKQ--------SITNTPNFVP-NSHYSSFDKRF-------SFK--------PTTTTYNIL 521
           DK         S   TP+ +  N+  +   K         +FK        P   TYNIL
Sbjct: 478 DKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNIL 537

Query: 522 MKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +++ C D    +A  L  EM+T GL+P+ ++   LI     +G ++ A +
Sbjct: 538 IESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYE 587



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 4/148 (2%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           + V++ M        + SYN ++      G    A ++Y  +K +   G+   DV+T++ 
Sbjct: 96  VNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDI---GIYP-DVYTHTI 151

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            +K F        AL++  +M   G   N +++ ++I+         +A HLF+EML+ G
Sbjct: 152 RMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG 211

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
             P+    N L+    +      + +LF
Sbjct: 212 ICPDILTFNKLIHVLCKKGNVQESEKLF 239


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 148/322 (45%), Gaps = 28/322 (8%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVY 312
           N+++  ++I   G  G   K+  I+E ++      N+ V+N++++      D    L ++
Sbjct: 155 NVFVYSSLICAYGRSGKLAKAVEIFEAMKVV-CKPNLVVYNAVIDACSKGGDYPTALRIF 213

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M + G+  D  ++N L+ A   A        I+ E   +E +G+ + DV TY+T++  
Sbjct: 214 REMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAE---MEERGIARDDV-TYNTLIAT 269

Query: 373 FADAKWWQMALKVKEDML-SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +       +   + E M  S+G+ P+ IT+S++I+  A  GL  +A+ LF+EM     EP
Sbjct: 270 YCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEP 329

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNMEHKDKQ 488
           +  C N ++        FD A  + R+      +    +D   Y+   D     + K ++
Sbjct: 330 DGICYNTMVDIHARLGNFDEAHSIRRA----MEEAGFAKDIVTYNALLDSYGK-QGKFRE 384

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR--VKALMNEMRTVGLSP 546
           +++               K+    P   TY+ L+ A C   +     AL  +++  GL P
Sbjct: 385 AMSLLEEM----------KQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQP 434

Query: 547 NHISWTILIDACGGSGNVEGAL 568
           + + ++ L+D C  +G+ + AL
Sbjct: 435 DVVLYSTLVDGCCKNGSPDEAL 456



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 151/331 (45%), Gaps = 19/331 (5%)

Query: 217 VPRADILFCNFVREF--GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           + R D+ +   +  +  G +  L +AL    A    +  P++    T+ID     G   +
Sbjct: 256 IARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIE-PSVITYSTMIDGYAKLGLAHE 314

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
           + A+++++R+QNV  +   +N++++++A    F     + + M++ G   D+ +YN LL 
Sbjct: 315 AIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLD 374

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           +    G    A  +  E+K   A      ++ TYS ++  +    + + A+ + +D+  A
Sbjct: 375 SYGKQGKFREAMSLLEEMKQRGASP----NILTYSALIDAYCKHGFHRDAMALFQDVKKA 430

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G+ P+ + +S+L++ C   G  ++A+ L EEM   G  PN    N LL A    C   R 
Sbjct: 431 GLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRK 490

Query: 453 -FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
            F   R + L +  + L    D   D+ S ++ K KQ++      V    +    K    
Sbjct: 491 NFPKLRFFLLPRVTMLLKPSVD--YDQQSLVDPKQKQALVLAAARV----FREMAKN-GV 543

Query: 512 KPTTTTYNILMKAC--CTDYYRVKALMNEMR 540
           KP   T++ ++ AC  C       +L+  MR
Sbjct: 544 KPNVVTFSSILNACSHCASVEDASSLLEAMR 574


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 148/322 (45%), Gaps = 28/322 (8%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVY 312
           N+++  ++I   G  G   K+  I+E ++      N+ V+N++++      D    L ++
Sbjct: 154 NVFVYSSLICAYGRSGKLAKAVEIFEAMKVV-CKPNLVVYNAVIDACSKGGDYPTALRIF 212

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M + G+  D  ++N L+ A   A        I+ E   +E +G+ + DV TY+T++  
Sbjct: 213 REMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAE---MEERGIARDDV-TYNTLIAT 268

Query: 373 FADAKWWQMALKVKEDML-SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +       +   + E M  S+G+ P+ IT+S++I+  A  GL  +A+ LF+EM     EP
Sbjct: 269 YCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEP 328

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNMEHKDKQ 488
           +  C N ++        FD A  + R+      +    +D   Y+   D     + K ++
Sbjct: 329 DGICYNTMVDIHARLGNFDEAHSIRRA----MEEAGFAKDIVTYNALLDSYGK-QGKFRE 383

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR--VKALMNEMRTVGLSP 546
           +++               K+    P   TY+ L+ A C   +     AL  +++  GL P
Sbjct: 384 AMSLLEEM----------KQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQP 433

Query: 547 NHISWTILIDACGGSGNVEGAL 568
           + + ++ L+D C  +G+ + AL
Sbjct: 434 DVVLYSTLVDGCCKNGSPDEAL 455



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 149/331 (45%), Gaps = 19/331 (5%)

Query: 217 VPRADILFCNFVREF--GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           + R D+ +   +  +  G +  L +AL    A    +  P++    T+ID     G   +
Sbjct: 255 IARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIE-PSVITYSTMIDGYAKLGLAHE 313

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
           + A+++++R+QNV  +   +N++++++A    F     + + M++ G   D+ +YN LL 
Sbjct: 314 AIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLD 373

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           +    G    A  +  E+K   A      ++ TYS ++  +    + + A+ + +D+  A
Sbjct: 374 SYGKQGKFREAMSLLEEMKQRGASP----NILTYSALIDAYCKHGFHRDAMALFQDVKKA 429

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR- 451
           G+ P+ + +S+L++ C   G  ++A+ L EEM   G  PN    N LL A    C   R 
Sbjct: 430 GLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRK 489

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
            F   R + L +  + L        D+ S ++ K KQ++      V    +    K    
Sbjct: 490 TFPKLRFFLLPRVTMLLKPSM--QDDQQSLVDPKQKQALVLAAARV----FREMAKN-GV 542

Query: 512 KPTTTTYNILMKAC--CTDYYRVKALMNEMR 540
           KP   T++ ++ AC  C        L+  MR
Sbjct: 543 KPNVVTFSSILNACSHCASVEDASNLLEAMR 573


>gi|357473771|ref|XP_003607170.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508225|gb|AES89367.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1173

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 133/320 (41%), Gaps = 57/320 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           PN++    +ID C   G   K+   Y  +RS+NV  +  VFN+L+   A    +    +V
Sbjct: 618 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACAQSGAMARAFDV 677

Query: 312 YKNMQK--LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
              M+     ++ D  ++  L+KAC  AG    A+E+Y  ++    KG  ++    Y+  
Sbjct: 678 IAEMEAEIQPIVPDHVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEV----YTIA 733

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +   +    W+ A  V +DM   GV P+ +  S+LI+   +A  +E A  + ++  + G 
Sbjct: 734 INSCSQTGDWEFARSVYDDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARKEGV 793

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +      + L+ AC +A  + RA  L+                                 
Sbjct: 794 QIGIMTYSSLMGACSKAKNWQRALELYE-------------------------------- 821

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPN 547
                          + K      T +T N L+ A C      KAL  ++EM+ +GL PN
Sbjct: 822 ---------------YLKSLKLVQTVSTVNALLTALCDGDQFQKALEVLSEMKGLGLCPN 866

Query: 548 HISWTILIDACGGSGNVEGA 567
            I+++ILI A     ++E A
Sbjct: 867 SITFSILIVASEKKDDMEAA 886



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 9/239 (3%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           IVP   + F   ++   K   +  A   Y   +++    +  +    I+ C   GD+  +
Sbjct: 688 IVPD-HVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEVYTIAINSCSQTGDWEFA 746

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           R++Y+D+  + V  +    ++L++V  H   L+   ++ +  +K GV   + +Y+ L+ A
Sbjct: 747 RSVYDDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARKEGVQIGIMTYSSLMGA 806

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
           C  A N   A E+Y  +K L+    L   V T + ++    D   +Q AL+V  +M   G
Sbjct: 807 CSKAKNWQRALELYEYLKSLK----LVQTVSTVNALLTALCDGDQFQKALEVLSEMKGLG 862

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           + PN+IT+S LI A      +E A  L  +  + G  P    C  ++  C+   +F++A
Sbjct: 863 LCPNSITFSILIVASEKKDDMEAAQMLLSQAKKDGAAPTLIMCRCIIGMCLR--RFEKA 919



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/260 (20%), Positives = 105/260 (40%), Gaps = 42/260 (16%)

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           ++++N+L+  C  + ++    E   +V  L     L  D   Y+T++          +  
Sbjct: 550 LSTFNMLMSVCASSQDS----EGAFQVIQLLKDARLDPDCKLYTTLISTCGKCGKVDLMF 605

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           +V   M+++GV PN  T+ +LI+ CA AG V +A   +  M     + +    N L+ AC
Sbjct: 606 EVFHKMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAAC 665

Query: 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP----- 498
            ++    RAF                       D I+ ME + +  + +   F       
Sbjct: 666 AQSGAMARAF-----------------------DVIAEMEAEIQPIVPDHVTFGTLMKAC 702

Query: 499 --------NSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNH 548
                           ++++ K ++  Y I + +C    D+   +++ ++M   G+ P+ 
Sbjct: 703 AKAGQVERAREVYKMIQQYNIKGSSEVYTIAINSCSQTGDWEFARSVYDDMTQKGVLPDE 762

Query: 549 ISWTILIDACGGSGNVEGAL 568
           +  + LID  G +  +E A 
Sbjct: 763 MFMSALIDVAGHAKKLEAAF 782


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 160/335 (47%), Gaps = 20/335 (5%)

Query: 240 ALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           AL+ +   ++HL      + C TII + G  G    +R I+E +    V  +++ + +L+
Sbjct: 13  ALQVFRFLQEHLEYELKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALL 72

Query: 299 NVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           +  A    LK    +++ M++ G   ++ +YN L+ AC          ++ G  + ++  
Sbjct: 73  SGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLINAC--TKRAYRLPDLVGLFEEMKQA 130

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           GV   D+ TY+ +V        +  A ++ ++M +    PN I+++++IN+   +G +++
Sbjct: 131 GVQPNDI-TYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDE 189

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476
           A+ LFEEM + G  PNS   N LL+A     ++++A  LF      + +  + + Y  NT
Sbjct: 190 AVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVG---MEDEGCIPDLYTYNT 246

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA-- 534
             + +M  +          F+         +R    P   TYN ++ A      R +A  
Sbjct: 247 --VIDMCGRGGLFAEAEGVFLEM-------QRKGCTPDRVTYNTMLDAYSKWSRRGRARD 297

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L+  M+  G +P+  ++ IL+DA G +G+   A+Q
Sbjct: 298 LLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQ 332



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 158/347 (45%), Gaps = 31/347 (8%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
            G++  L  A   ++   K   +P+++    ++      G   ++ A++E ++ +  + N
Sbjct: 40  LGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKGCSPN 99

Query: 291 IYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC-CLAGNTVLAQEI 346
           +  +N+L+N     A+ L   + +++ M++ GV  +  +YN ++ AC CL+     +Q +
Sbjct: 100 VLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQIL 159

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
               K ++A   L  +V +Y+T++     +     A+++ E+M   G +PN+ T++SL+ 
Sbjct: 160 ----KEMKAVNCLP-NVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLK 214

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           A A  G  E+AM LF  M   GC P+    N ++  C     F  A  +F    L   + 
Sbjct: 215 AYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVF----LEMQRK 270

Query: 467 ALGED---YDGNTDRISNMEHKDK-QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
               D   Y+   D  S    + + + +  T             KR    P   TYNIL+
Sbjct: 271 GCTPDRVTYNTMLDAYSKWSRRGRARDLLKTM------------KRAGCTPDLWTYNILL 318

Query: 523 KACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            A        +A+   +E++  G SPN +S++ LI+  G  G  E A
Sbjct: 319 DAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGRLGYFEEA 365



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 101/214 (47%), Gaps = 6/214 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I +   +   G+   L  A+  ++  K+   SPN +   +++      G Y K+  ++  
Sbjct: 172 ISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVG 231

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLE--VYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +    ++Y +N+++++      F     V+  MQ+ G   D  +YN +L A      
Sbjct: 232 MEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSR 291

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+++   +K ++  G    D++TY+ ++     A     A+++  ++ +AG +PN +
Sbjct: 292 RGRARDL---LKTMKRAGCTP-DLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLV 347

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           ++S+LIN     G  E+A   + EM   GC PN+
Sbjct: 348 SFSALINMYGRLGYFEEAERAWVEMRATGCVPNA 381



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 88/162 (54%), Gaps = 6/162 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P++Y   T+ID+CG  G + ++  ++ +++ +  T +   +N++++  +   +     ++
Sbjct: 239 PDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDL 298

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            K M++ G   D+ +YNILL A   AG+   A +I+ E+K   A G    ++ ++S ++ 
Sbjct: 299 LKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELK---AAG-HSPNLVSFSALIN 354

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
           ++    +++ A +   +M + G  PN   +  L+N+ ++ G+
Sbjct: 355 MYGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSYSHHGM 396


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 165/365 (45%), Gaps = 35/365 (9%)

Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
           KR++  A   +    +   SPN++    +I    + G+   +   ++ +  +    N+  
Sbjct: 183 KRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVT 242

Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L++       +    E+ ++M   G+  ++ SYN+++   C  G     +EI   + 
Sbjct: 243 YNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRM---KEISFVLT 299

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            +  +G   LD  TY+T++K +     +  AL +  +ML  G++P+ IT++SLI++   A
Sbjct: 300 EMNKRGY-SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKA 358

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVAL 468
           G + +A    ++M   G  PN +    L+    +    + A+R+ +       S + V  
Sbjct: 359 GNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTY 418

Query: 469 GEDYDGN------TDRISNMEHKDKQSITNTPNFVPNSH-YSSFDKRF------------ 509
               +G+       D I+ +E   ++ +  TP+ V  S   S F + +            
Sbjct: 419 NALINGHCIAGKMVDAIAVLEDMKEKGL--TPDVVSYSTVLSGFCRSYDVDEALRVKRKM 476

Query: 510 ---SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
                KP T TY+ L++  C      +A  L +EM  VGL P+  ++T LI+A    G++
Sbjct: 477 VAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDL 536

Query: 565 EGALQ 569
           + A+Q
Sbjct: 537 QKAIQ 541



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 147/321 (45%), Gaps = 17/321 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEV 311
           PN     T++D     G   ++  + +++     + ++  +N+L+N +  A  +   + V
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAV 437

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            ++M++ G+  D+ SY+ +L   C + +   A  +    + + AKG+ K D  TYS++++
Sbjct: 438 LEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVK---RKMVAKGI-KPDTITYSSLIQ 493

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F + +  + A  + ++ML  G+ P+  T+++LINA    G +++A+ L  EM++ G  P
Sbjct: 494 GFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLP 553

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    ++L+    +  +   A RL       ++ V     Y    +  SN+E K   S+ 
Sbjct: 554 DVVTYSVLINGLNKQARTREAKRLLLKLFYEES-VPSDVTYHTLIENCSNIEFKSVVSLI 612

Query: 492 NTPNFVPNSHYSSFDKRF------SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVG 543
               F      +  D+ F      + KP  T YN+++   C   D  +  +L  EM   G
Sbjct: 613 K--GFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSG 670

Query: 544 LSPNHISWTILIDACGGSGNV 564
              + ++   L+      G V
Sbjct: 671 FLLHTVTVIALVKTLHKEGKV 691



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 168/384 (43%), Gaps = 48/384 (12%)

Query: 90  FAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSI-----------REGRIDCVVGVLKK 138
           +  ++++ + S+ N+S FA  +  EM+ S +  ++             G +D  +    +
Sbjct: 172 YNAVLDATIRSKRNIS-FAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDR 230

Query: 139 LNELGVAPL-----ELFDG--------SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185
           + + G  P       L DG         GF+LL++   + L+   +   V +  +  E R
Sbjct: 231 MEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGR 290

Query: 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245
           +      +E   V   +NK   +L           ++ +   ++ + K+ +   AL  + 
Sbjct: 291 M------KEISFVLTEMNKRGYSLD----------EVTYNTLIKGYCKEGNFHQALVMHA 334

Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD- 304
              +H  SP++    ++I      G+  ++    + +R + +  N   + +L++  +   
Sbjct: 335 EMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKG 394

Query: 305 -LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
            +     V K M   G    + +YN L+   C+AG  V A  +  ++K    KG L  DV
Sbjct: 395 YMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKE---KG-LTPDV 450

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            +YST++  F  +     AL+VK  M++ G+ P+TIT+SSLI         ++A  LF+E
Sbjct: 451 VSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDE 510

Query: 424 MLQAGCEPNSQCCNILLQA-CVEA 446
           ML+ G  P+      L+ A C+E 
Sbjct: 511 MLRVGLPPDEFTYTALINAYCMEG 534


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 137/298 (45%), Gaps = 20/298 (6%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASY 327
           GD + +R+++E ++   +T +I  +N+L++       L  ++ +++ M+ +G   D+ +Y
Sbjct: 146 GDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITY 205

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N L+ + C     + A E + E+K  +    LK +V +YST++         QMA+K   
Sbjct: 206 NALINSFCKFKGMLRAFEFFREMKDKD----LKPNVISYSTLIDALCKEGMMQMAIKFFV 261

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           DM   G+ PN  T+SSLI+A   AG + +A  L +EMLQ   + N      LL    E  
Sbjct: 262 DMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEG 321

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
             + A  LFR+  + K  V    +    T  I    H   +S+                +
Sbjct: 322 MMNEAEELFRA--MGKAGVT--PNLQAYTALIHG--HIKVRSMDKAMELFNEM------R 369

Query: 508 RFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
               KP    +  ++   C++      K +M EM+  G+  N + +T L+DA   +GN
Sbjct: 370 EKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGN 427



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 72/360 (20%), Positives = 138/360 (38%), Gaps = 32/360 (8%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--Y 279
           I +   +  F K + ++ A   +   K     PN+    T+ID   +C + M   AI  +
Sbjct: 203 ITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLID--ALCKEGMMQMAIKFF 260

Query: 280 EDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
            D+    +  N + ++SL++ N  A +L     +   M +  V  ++ +Y  LL   C  
Sbjct: 261 VDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEE 320

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A+E++  +     K  +  ++  Y+ ++      +    A+++  +M    + P+
Sbjct: 321 GMMNEAEELFRAM----GKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPD 376

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF- 456
            + W +++    +   +E+   +  EM ++G   N      L+ A  +A     A  L  
Sbjct: 377 ILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLE 436

Query: 457 --RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS-HYSSFDKRFSFKP 513
             R      T V      DG   R                  V  + +Y         +P
Sbjct: 437 EMRDLGTEVTVVTFCALIDGLCKR----------------GLVQEAIYYFGRMPDHDLQP 480

Query: 514 TTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
               Y  L+   C +      K L +EM+   + P+ I++T +ID     GN + AL  R
Sbjct: 481 NVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMR 540



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 6/152 (3%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           + +++M   G+   + +YNI++   C  G+ + A+ ++ ++K +     L  D+ TY+T+
Sbjct: 118 DFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMG----LTPDIVTYNTL 173

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAG 428
           +  +        ++ + E+M   G  P+ IT+++LIN+ C   G++ +A   F EM    
Sbjct: 174 IDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGML-RAFEFFREMKDKD 232

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
            +PN    + L+ A  +      A + F   T
Sbjct: 233 LKPNVISYSTLIDALCKEGMMQMAIKFFVDMT 264



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 87/203 (42%), Gaps = 6/203 (2%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           N  I  T++D     G+  ++  + E++R     + +  F +L++       ++  +  +
Sbjct: 411 NPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYF 470

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M    +  ++A Y  L+   C       A++++ E   ++ K ++  D   Y+ ++  
Sbjct: 471 GRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDE---MQDKNMIP-DKIAYTAMIDG 526

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                 +Q AL ++  M+  G+  +   ++SL+   +  G V+QA     EM+  G  P+
Sbjct: 527 NLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPD 586

Query: 433 SQCCNILLQACVEACQFDRAFRL 455
              C  LL+   E    D A  L
Sbjct: 587 ETLCTRLLRKHYELGNIDEAIEL 609


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 160/328 (48%), Gaps = 39/328 (11%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVNAHDLKF-TL 309
           P+ +   ++I+  G+C  GD  ++ A++ +   +    +I ++N+L+  ++   L    L
Sbjct: 354 PDEFTYSSLIN--GLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQAL 411

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++ K+M + G   D+ +YN+++   C  G    A  I  +     AKG +  D+FT++T+
Sbjct: 412 QLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAI---AKGCIP-DIFTFNTL 467

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +   +    A+++ + MLS G+TP+ IT+++L+N    A  ++  +  F+ ML+ GC
Sbjct: 468 IDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGC 527

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVAL-----GEDYDGNTDRISN 481
            PN    NIL+++  +  +   A  LF+      L+   V L     G   +G  D+   
Sbjct: 528 TPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYE 587

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEM 539
           +                   + + +K + F  +T  +NI++ A C   +    + L ++M
Sbjct: 588 L-------------------FVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKM 628

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
                +P++ ++ ++ID+   +GN++ A
Sbjct: 629 GGSDCAPDNYTYRVMIDSYCKTGNIDLA 656



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 161/410 (39%), Gaps = 70/410 (17%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +C  +  F K+   + A   +D   K    P++     +I V    G+  +S  ++  + 
Sbjct: 184 YCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVM 243

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            + V  N++ FN  +        +     + +++   G+  D+ SYN L+   C     V
Sbjct: 244 KRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLV 303

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A E Y    H      ++ + FTY+TI+  F  A   Q A K+  D +  G  P+  T+
Sbjct: 304 EA-ECY---LHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTY 359

Query: 402 SSLINACAN-----------------------------------AGLVEQAMHLFEEMLQ 426
           SSLIN   N                                    GLV QA+ L ++M++
Sbjct: 360 SSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMME 419

Query: 427 AGCEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
            GC P+    N+++   C   C  D    L  +  ++K  +     ++   D      + 
Sbjct: 420 HGCSPDIWTYNLVVNGLCKMGCLSDANGIL--NDAIAKGCIPDIFTFNTLIDGYCKQRNM 477

Query: 486 DKQ--------SITNTPNFVP-NSHYSSFDKRF-------SFK--------PTTTTYNIL 521
           DK         S   TP+ +  N+  +   K         +FK        P   TYNIL
Sbjct: 478 DKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNIL 537

Query: 522 MKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +++ C D    +A  L  EM+T GL+P+ ++   LI     +G ++ A +
Sbjct: 538 IESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYE 587



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 4/148 (2%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           + V++ M        + SYN ++      G    A ++Y  +K +   G+   DV+T++ 
Sbjct: 96  VNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDI---GIYP-DVYTHTI 151

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            +K F        AL++  +M   G   N +++ ++I+         +A HLF+EML+ G
Sbjct: 152 RMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG 211

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
             P+    N L+    +      + +LF
Sbjct: 212 ICPDILTFNKLIHVLCKKGNVQESEKLF 239


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 147/335 (43%), Gaps = 56/335 (16%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMNV-----NAHDL 305
           SP+     T+I   G+C +   +RA  I ED R+    L+++ ++S++N        HD 
Sbjct: 401 SPDKVTFGTLIH--GLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDA 458

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
               EVYKNM K G   +   YN L+   C       A +IY E   + + G     + T
Sbjct: 459 N---EVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIE---MTSNGCCP-TIIT 511

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+T++     A+ +Q A  + ++ML  G  P+  T++SLI        V+ A+ +++E+L
Sbjct: 512 YNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEIL 571

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
            AG + +    NIL+     A + D AF ++                         +E K
Sbjct: 572 DAGLQVDVMVHNILIHGLCSAGKVDEAFCIY-------------------------LEMK 606

Query: 486 DKQSITN--TPNFVPNSHY--SSFDKRFS---------FKPTTTTYNILMKACCTDYYRV 532
           +K    N  T N + +  Y   S DK  S          KP   TYN  +K  C+     
Sbjct: 607 EKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTP 666

Query: 533 KA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           +   L+NE+   G+ P  I+W+IL+ A    G ++
Sbjct: 667 EGVLLLNEVLATGIMPTVITWSILVRAVIKYGPIQ 701



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 135/313 (43%), Gaps = 24/313 (7%)

Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320
           I + G+C  GD   +  +Y D+    + L++ V+NSL+     ++  T E +K     G 
Sbjct: 304 ILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIK-GFCEVGRTGEAWKFWDSTGF 362

Query: 321 --MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
             +  + +YNI+ K    +G    A E+   +K LE       D  T+ T++    +  +
Sbjct: 363 SGIRQITTYNIMTKGLLDSGMVSEATEL---LKQLENDASCSPDKVTFGTLIHGLCENGY 419

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A ++ ED  ++G   +  ++SS+IN     G    A  +++ M++ GC+PNS   N 
Sbjct: 420 ANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNA 479

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME-HKDKQSITNTPNFV 497
           L+       + + A +++   T S         Y+   D +   E +++  S+T      
Sbjct: 480 LINGFCRVSKINDAIKIYIEMT-SNGCCPTIITYNTLIDGLCKAEKYQEASSLTK----- 533

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
                    +R  FKP   TY  L++  C D     AL   +E+   GL  + +   ILI
Sbjct: 534 ------EMLER-GFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILI 586

Query: 556 DACGGSGNVEGAL 568
                +G V+ A 
Sbjct: 587 HGLCSAGKVDEAF 599



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           +  ++ +YNI+L++ C  G+   A  ++  ++    +GV   D  TYST++   A     
Sbjct: 154 IAPNLQTYNIILRSLCARGDVDRAVSLFSSLRR---RGVAP-DRVTYSTLMSGLAKHDQL 209

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-AGCEPNSQCCNI 438
             AL + ++M + GV  + + +++L++ C   G+ E+AM ++E++++  G  PN     +
Sbjct: 210 DNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKV 269

Query: 439 LLQACVEACQFDRA 452
           +L    +  +F  A
Sbjct: 270 MLDGLCKLGRFKEA 283



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 96/212 (45%), Gaps = 5/212 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHD-LKFTLE 310
           +PN+     I+      GD  ++ +++  LR + V  +   +++LM+ +  HD L   L+
Sbjct: 155 APNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALD 214

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +   M   GV AD   YN LL  C   G    A +++   + L        ++ TY  ++
Sbjct: 215 LLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVW---EQLVRDPGASPNLATYKVML 271

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                   ++ A +V   M++     +T+T+  LI+    +G V+ A  ++ +M++AG  
Sbjct: 272 DGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLV 331

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
            +    N L++   E  +   A++ + S   S
Sbjct: 332 LDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFS 363



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 64/139 (46%)

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
           LG    + S+N LL A   A     A   +  + H      +  ++ TY+ I++      
Sbjct: 113 LGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARG 172

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
               A+ +   +   GV P+ +T+S+L++  A    ++ A+ L +EM   G + ++ C N
Sbjct: 173 DVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYN 232

Query: 438 ILLQACVEACQFDRAFRLF 456
            LL  C     F++A +++
Sbjct: 233 ALLSGCFRTGMFEKAMKVW 251


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 158/352 (44%), Gaps = 34/352 (9%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL--N 290
           KK  ++ A +  +   +     ++  C T++   G+C  +  S+A    L+ Q +    N
Sbjct: 540 KKGKVIEANKLLEVVIQRGCILDVVTCTTLVK--GLCMKHRISKATQLFLKMQKLGCMPN 597

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNM------QKLGVMADMASYNILLKACCLAGNTVL 342
           +    +LM     + ++K  LE++KNM        +    +  SY+I++   C  G    
Sbjct: 598 VVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDE 657

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A+E++ E+K L   GV+  DV +Y++++  F  +  W+ A  +  +M+  GV P+  T+S
Sbjct: 658 ARELFKEMKAL---GVIP-DVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFS 713

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSW 459
            LI+     G V +A  L E M+Q GC PN+     L++      +   A +LF   +  
Sbjct: 714 VLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKL 773

Query: 460 TLSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
                 V  G    G   T  I       K+ +++T  +  N           FKP   +
Sbjct: 774 GCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTN-----------FKPDVIS 822

Query: 518 YNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           Y+I++   C      +A  L  EM+ +G+ PN IS+T LI     SG +E A
Sbjct: 823 YSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDA 874



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 151/364 (41%), Gaps = 65/364 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++     +ID+    G  +++  + E +  +   L+I  +++L+      H +     +
Sbjct: 345 PDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWL 404

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV--------------------- 350
           + +MQKLG   D  +Y  L+K  C  GN  +A +++ E+                     
Sbjct: 405 FMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSII 464

Query: 351 -----------------KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
                            + ++A+G++  DV +Y+T++  F  +  W+ A  +  +ML  G
Sbjct: 465 IDGLCKDRREDEARELFEEMKAQGIMP-DVISYTTLIHGFCLSGKWEKAKCLFNEMLDVG 523

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + P+  T S LI+     G V +A  L E ++Q GC  +   C  L++      +  +A 
Sbjct: 524 IQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKAT 583

Query: 454 RLFRSW--------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
           +LF            ++   +  G    GN  +I+   HK+  S T        S Y   
Sbjct: 584 QLFLKMQKLGCMPNVVTCATLMKGLCQSGNI-KIALELHKNMLSDT--------SPYG-- 632

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
               + KP   +Y+I++   C        + L  EM+ +G+ P+ IS+T LI     SG 
Sbjct: 633 ---INCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGK 689

Query: 564 VEGA 567
            + A
Sbjct: 690 WKDA 693



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----LKLDVFT 365
           +++  MQKLG + D+ +Y  L+K  C  GN   A E++   K L   G      K DV +
Sbjct: 765 QLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHK--KMLSDTGQYGTNFKPDVIS 822

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           YS I+           A ++ ++M + GV PN I+++SLI+    +G +E A HLF EM+
Sbjct: 823 YSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMV 882

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAF 453
             G + N+   ++++    +  Q D+A 
Sbjct: 883 DQGVQLNAVTYSVMIHGFCKEGQIDKAL 910



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 153/388 (39%), Gaps = 73/388 (18%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++     +ID+    G  +++  + E +  +   L+I  +++L+      H +     +
Sbjct: 52  PDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWL 111

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV--------------------- 350
           + +MQKLG   D  +Y  L+K  C  GN  +A +++ E+                     
Sbjct: 112 FMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSII 171

Query: 351 -----------------KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
                            K ++A+G++  DV +Y++++  F  +  W+ A  +  +ML  G
Sbjct: 172 IDGLCKDRREDEARELFKEMKAQGMMP-DVISYTSLIHGFCHSGKWEKAKCLFNEMLDVG 230

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + P+  T   LI+     G V +A  L E M+  GC  +    + L++      +   A 
Sbjct: 231 IQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEAT 290

Query: 454 RLFRSWT---LSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNF-----VPNSHYS 503
           +LF S          +A G    G   T +I+   H  ++ + +T  +      P+   S
Sbjct: 291 QLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTS 350

Query: 504 SFDKRFSFKP--------------------TTTTYNILMKACCTDYYRVKA--LMNEMRT 541
           S       K                        TY+ L+K  C ++   +A  L   M+ 
Sbjct: 351 SMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQK 410

Query: 542 VGLSPNHISWTILIDACGGSGNVEGALQ 569
           +G  P+ I++  L+     +GN+  ALQ
Sbjct: 411 LGCRPDAITYGTLMKGLCQTGNINIALQ 438



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 137/327 (41%), Gaps = 49/327 (14%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
            P++     +ID+    G  +++  + E +  +   L+I  +++L+      H +    +
Sbjct: 232 QPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQ 291

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-GV--LKLDVFTYS 367
           ++ +M+KLG   D  +Y  L+K  C  G   +A  ++ E+ +  ++ G+  ++ DV T S
Sbjct: 292 LFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSS 351

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            ++ +         A ++ E M+  G   + +T+S+LI        + +A  LF  M + 
Sbjct: 352 MLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKL 411

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
           GC P++     L++   +    + A +L +                              
Sbjct: 412 GCRPDAITYGTLMKGLCQTGNINIALQLHQ------------------------------ 441

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
           + + +T  +               KPT  +Y+I++   C D    +A  L  EM+  G+ 
Sbjct: 442 EMLNDTGRY-----------GIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIM 490

Query: 546 PNHISWTILIDACGGSGNVEGALQCRF 572
           P+ IS+T LI     SG  E A +C F
Sbjct: 491 PDVISYTTLIHGFCLSGKWEKA-KCLF 516



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 116/263 (44%), Gaps = 30/263 (11%)

Query: 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY--ICRT 261
           KP+   AI Y+ I+       C   RE  + R+L   ++A       +S  ++    CR+
Sbjct: 636 KPN---AISYSIIIDG----LCKCGRE-DEARELFKEMKALGVIPDVISYTSLIHGFCRS 687

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLG 319
                   G +  ++ ++ ++    V  ++  F+ L+++   + K     E+ + M + G
Sbjct: 688 --------GKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRG 739

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
            + +  +Y  L+K  C+      A +++ +++ L   G L  DV TY T++K        
Sbjct: 740 CIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKL---GCLP-DVVTYGTLMKGLCQTGNI 795

Query: 380 QMALKVKEDMLS------AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           + AL++ + MLS          P+ I++S +I+     G  ++A  LF+EM   G  PN 
Sbjct: 796 KTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNV 855

Query: 434 QCCNILLQACVEACQFDRAFRLF 456
                L+     + + + A  LF
Sbjct: 856 ISYTSLIHGFCRSGKLEDAKHLF 878



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 112/268 (41%), Gaps = 24/268 (8%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+ + M + G + D+ +Y+ L+K  C+      A  ++  ++ L  +     D  TY T+
Sbjct: 368 ELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRP----DAITYGTL 423

Query: 370 VKVFADAKWWQMALKVKEDMLSA----GVT--PNTITWSSLINACANAGLVEQAMHLFEE 423
           +K         +AL++ ++ML+     G+   P  I++S +I+        ++A  LFEE
Sbjct: 424 MKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEE 483

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M   G  P+      L+     + ++++A  LF         V +  D   ++  I  + 
Sbjct: 484 MKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEML----DVGIQPDVTTSSVLIDMLC 539

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRT 541
            K K    N    V        D          T   L+K  C  +   KA  L  +M+ 
Sbjct: 540 KKGKVIEANKLLEVVIQRGCILD--------VVTCTTLVKGLCMKHRISKATQLFLKMQK 591

Query: 542 VGLSPNHISWTILIDACGGSGNVEGALQ 569
           +G  PN ++   L+     SGN++ AL+
Sbjct: 592 LGCMPNVVTCATLMKGLCQSGNIKIALE 619



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 102/268 (38%), Gaps = 55/268 (20%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL--------KLDVFTY 366
           M+  G+  D  ++NIL+   C   N     E    +  +  +G +        + DV T 
Sbjct: 1   MRLAGLFPDSFTFNILINCLC---NVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTS 57

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           S ++ +         A ++ E M+  G   + +T+S+LI        + +A  LF  M +
Sbjct: 58  SMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQK 117

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            GC P++     L++   +    + A +L +                             
Sbjct: 118 LGCRPDAITYGTLMKGLCQTGNINIALQLHQ----------------------------- 148

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGL 544
            + + +T  +               KPT  +Y+I++   C D    +A  L  EM+  G+
Sbjct: 149 -EMLNDTGRY-----------GIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGM 196

Query: 545 SPNHISWTILIDACGGSGNVEGALQCRF 572
            P+ IS+T LI     SG  E A +C F
Sbjct: 197 MPDVISYTSLIHGFCHSGKWEKA-KCLF 223


>gi|145353124|ref|NP_195209.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635623|sp|Q0WLC6.2|PP349_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g34830, chloroplastic; Flags: Precursor
 gi|332661026|gb|AEE86426.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1089

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 128/307 (41%), Gaps = 57/307 (18%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLE 310
           N++    +ID C   G   K+   Y  LRS+NV  +  VFN+L++      A D  F + 
Sbjct: 536 NLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 595

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
                +   +  D  S   L+KACC AG    A+E+Y  +     +G  ++    Y+  V
Sbjct: 596 AEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEV----YTIAV 651

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
              + +  W  A  + +DM    VTP+ + +S+LI+   +A ++++A  + ++    G  
Sbjct: 652 NSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIR 711

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
             +   + L+ AC  A  + +A  L+                                  
Sbjct: 712 LGTISYSSLMGACCNAKDWKKALELYEKI------------------------------- 740

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNH 548
                           K    +PT +T N L+ A C      KA+  ++E++T+GL PN 
Sbjct: 741 ----------------KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNT 784

Query: 549 ISWTILI 555
           I++++L+
Sbjct: 785 ITYSMLM 791



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 107/222 (48%), Gaps = 11/222 (4%)

Query: 242 RAYDA-----SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           RA+D      ++ H   P+      ++  C   G   +++ +Y+ +    +     V+  
Sbjct: 590 RAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTI 649

Query: 297 LMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
            +N    + D  F   +YK+M++  V  D   ++ L+    +AG+  +  E +G ++  +
Sbjct: 650 AVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALID---VAGHAKMLDEAFGILQDAK 706

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
           ++G+ +L   +YS+++    +AK W+ AL++ E + S  + P   T ++LI A      +
Sbjct: 707 SQGI-RLGTISYSSLMGACCNAKDWKKALELYEKIKSIKLRPTISTMNALITALCEGNQL 765

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            +AM   +E+   G +PN+   ++L+ A      F+ +F+L 
Sbjct: 766 PKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDFEVSFKLL 807



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 32/253 (12%)

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--------DVFTYST 368
           KL +   M+++N+L+  C  +      Q+I G      A+GVL+L        D   Y+T
Sbjct: 460 KLILNPTMSTFNMLMSVCASS------QDIEG------ARGVLRLVQESGMTADCKLYTT 507

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++   A +       +V   M ++GV  N  T+ +LI+ CA AG V +A   +  +    
Sbjct: 508 LISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKN 567

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            +P+    N L+ AC ++   DRAF +              E +  + D IS       +
Sbjct: 568 VKPDRVVFNALISACGQSGAVDRAFDVLAEMK--------AETHPIDPDHISIGAL--MK 617

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
           +  N               ++  + T   Y I + +C    D+    ++  +M+   ++P
Sbjct: 618 ACCNAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTP 677

Query: 547 NHISWTILIDACG 559
           + + ++ LID  G
Sbjct: 678 DEVFFSALIDVAG 690


>gi|110741791|dbj|BAE98839.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1089

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 128/307 (41%), Gaps = 57/307 (18%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLE 310
           N++    +ID C   G   K+   Y  LRS+NV  +  VFN+L++      A D  F + 
Sbjct: 536 NLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 595

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
                +   +  D  S   L+KACC AG    A+E+Y  +     +G  ++    Y+  V
Sbjct: 596 AEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEV----YTIAV 651

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
              + +  W  A  + +DM    VTP+ + +S+LI+   +A ++++A  + ++    G  
Sbjct: 652 NSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIR 711

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
             +   + L+ AC  A  + +A  L+                                  
Sbjct: 712 LGTISYSSLMGACCNAKDWKKALELYEKI------------------------------- 740

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNH 548
                           K    +PT +T N L+ A C      KA+  ++E++T+GL PN 
Sbjct: 741 ----------------KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNT 784

Query: 549 ISWTILI 555
           I++++L+
Sbjct: 785 ITYSMLM 791



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 107/222 (48%), Gaps = 11/222 (4%)

Query: 242 RAYDA-----SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           RA+D      ++ H   P+      ++  C   G   +++ +Y+ +    +     V+  
Sbjct: 590 RAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTI 649

Query: 297 LMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
            +N    + D  F   +YK+M++  V  D   ++ L+    +AG+  +  E +G ++  +
Sbjct: 650 AVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALID---VAGHAKMLDEAFGILQDAK 706

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
           ++G+ +L   +YS+++    +AK W+ AL++ E + S  + P   T ++LI A      +
Sbjct: 707 SQGI-RLGTISYSSLMGACCNAKDWKKALELYEKIKSIKLRPTISTMNALITALCEGNQL 765

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            +AM   +E+   G +PN+   ++L+ A      F+ +F+L 
Sbjct: 766 PKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDFEVSFKLL 807



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 32/253 (12%)

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--------DVFTYST 368
           KL +   M+++N+L+  C  +      Q+I G      A+GVL+L        D   Y+T
Sbjct: 460 KLILNPTMSTFNMLMSVCASS------QDIEG------ARGVLRLVQESGMTADCKLYTT 507

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++   A +       +V   M ++GV  N  T+ +LI+ CA AG V +A   +  +    
Sbjct: 508 LISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKN 567

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            +P+    N L+ AC ++   DRAF +              E +  + D IS       +
Sbjct: 568 VKPDRVVFNALISACGQSGAVDRAFDVLAEMK--------AETHPIDPDHISIGAL--MK 617

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
           +  N               ++  + T   Y I + +C    D+    ++  +M+   ++P
Sbjct: 618 ACCNAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTP 677

Query: 547 NHISWTILIDACG 559
           + + ++ LID  G
Sbjct: 678 DEVFFSALIDVAG 690


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 153/365 (41%), Gaps = 53/365 (14%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
           + + +    + R    AL  ++  K+    P++     IID+ G  G  +     ++E++
Sbjct: 120 YTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEM 179

Query: 283 RSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           ++Q +  + Y +N+ +   A     +   E++  M+      D  +YN LL     AG  
Sbjct: 180 KAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAG-- 237

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
               E    +K +E+ G L  ++ TY+ ++  F  A     A ++K+ M+S G+ P+  T
Sbjct: 238 -WYNEAANVLKEMESAGCLP-NIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFT 295

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++SL++A + AG VEQAM ++ +M  + C PNS   N L+    +   F     +F    
Sbjct: 296 YTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIF---- 351

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN----------FVPNSHYSSFDKRF- 509
                                   +D Q+    P+          F  N  YS   K F 
Sbjct: 352 ------------------------EDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFR 387

Query: 510 -----SFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
                 F+P   T+NIL++A   C    +  ++ + M   G +P+  ++  L+ A    G
Sbjct: 388 GMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREG 447

Query: 563 NVEGA 567
             E A
Sbjct: 448 RWEHA 452



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 151/362 (41%), Gaps = 53/362 (14%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           +R  G++  L +  R + + ++     ++Y   ++I        + ++   +E ++    
Sbjct: 89  LRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGP 148

Query: 288 TLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
             ++  +N ++++        +  LE+++ M+  G+  D  +YN  + AC        A 
Sbjct: 149 QPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEAT 208

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           E++ ++K          D  TY+ ++ V+  A W+  A  V ++M SAG  PN +T++ L
Sbjct: 209 ELFTQMKSSNCTP----DRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNEL 264

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
           ++A   AGL   A  + + M+  G EP+      LL A   A + ++A  ++        
Sbjct: 265 LSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIY-------- 316

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPN-FVPNSHYSSFDKRFSF------------ 511
                     N  R SN           TPN F  N+      K  +F            
Sbjct: 317 ----------NQMRTSNC----------TPNSFTFNALIGMHGKNKNFSEMMVIFEDMQA 356

Query: 512 ---KPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
              +P   T+N L+ A   +  Y  V  +   M+  G  P+  ++ ILI+A G  G+ + 
Sbjct: 357 CGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQ 416

Query: 567 AL 568
           AL
Sbjct: 417 AL 418



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 150/344 (43%), Gaps = 37/344 (10%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           P+++   +++      G   ++  IY  +R+ N T N + FN+L+ ++  +  F+  + +
Sbjct: 291 PDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVI 350

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +++MQ  GV  D+ ++N LL A    G   +  E+    + ++  G  + D  T++ +++
Sbjct: 351 FEDMQACGVEPDIVTWNSLLGAF---GKNGMYSEVLKVFRGMKKAG-FEPDKATFNILIE 406

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +        AL + + ML AG TP+  T+++L+ A A  G  E A  + +E+ ++  +P
Sbjct: 407 AYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKP 466

Query: 432 NSQCCNILLQACVEACQFDRAFR---------------LFRSWTLSKTQVALGEDYDGNT 476
           N      +L A     + ++                  L +++ L  ++ +L    D   
Sbjct: 467 NDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSL---VDEAE 523

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYS-----------SFDKRFSFKPTTTTYNILMKAC 525
           D    M H    S T+T N + + +             +  +    +P   TYN LM   
Sbjct: 524 DAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMY 583

Query: 526 CTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             +  Y + +A + E    G +P+ +S+  +I +    G +  A
Sbjct: 584 GREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSA 627



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/241 (19%), Positives = 98/241 (40%), Gaps = 37/241 (15%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   IL   FV  + K   +  A  A+ A + H    +      +I + G  G   K+ 
Sbjct: 499 VPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKAT 558

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
             +  LRS  +  ++  +N LM +   +      +Y+  +              L+ C  
Sbjct: 559 DTFALLRSTGLEPDVVTYNCLMGMYGRE-----GMYRKCEAT------------LRECMA 601

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           AG T                     D+ +Y+T++  ++       A ++  +M+S G+ P
Sbjct: 602 AGQTP--------------------DLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQP 641

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           ++ T+++ +    N G+  +A+ + + M + GC+P+      L+ A  +  +F+   R+ 
Sbjct: 642 DSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKFEEVERIL 701

Query: 457 R 457
           +
Sbjct: 702 K 702



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/312 (18%), Positives = 118/312 (37%), Gaps = 68/312 (21%)

Query: 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
           AC V    + + + +  FGK       L+ +   KK    P+      +I+  G CG   
Sbjct: 356 ACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSD 415

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT------------------------L 309
           ++ +IY+ +     T ++  FN+L+   A + ++                         L
Sbjct: 416 QALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASML 475

Query: 310 EVYKN---MQKLGVMAD-------------MASYNILLKACCL---AGNTVLAQEIYGEV 350
             Y N   ++KL  M D             + ++ ++   C L   A +  LA   +G +
Sbjct: 476 HAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYL 535

Query: 351 KHLEA----------KGV---------------LKLDVFTYSTIVKVFADAKWWQMALKV 385
                          KG+               L+ DV TY+ ++ ++     ++     
Sbjct: 536 SDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEAT 595

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             + ++AG TP+ ++++++I + +  G +  A  +F EM+  G +P+S   N  +   V 
Sbjct: 596 LRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVN 655

Query: 446 ACQFDRAFRLFR 457
              F  A  + +
Sbjct: 656 GGMFPEALSVVK 667


>gi|110740372|dbj|BAF02081.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1089

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 128/307 (41%), Gaps = 57/307 (18%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLE 310
           N++    +ID C   G   K+   Y  LRS+NV  +  VFN+L++      A D  F + 
Sbjct: 536 NLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 595

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
                +   +  D  S   L+KACC AG    A+E+Y  +     +G  ++    Y+  V
Sbjct: 596 AEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEV----YTIAV 651

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
              + +  W  A  + +DM    VTP+ + +S+LI+   +A ++++A  + ++    G  
Sbjct: 652 NSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIR 711

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
             +   + L+ AC  A  + +A  L+                                  
Sbjct: 712 LGTISYSSLMGACCNAKDWKKALELYEKI------------------------------- 740

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNH 548
                           K    +PT +T N L+ A C      KA+  ++E++T+GL PN 
Sbjct: 741 ----------------KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNT 784

Query: 549 ISWTILI 555
           I++++L+
Sbjct: 785 ITYSMLM 791



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 107/222 (48%), Gaps = 11/222 (4%)

Query: 242 RAYDA-----SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           RA+D      ++ H   P+      ++  C   G   +++ +Y+ +    +     V+  
Sbjct: 590 RAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTI 649

Query: 297 LMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
            +N    + D  F   +YK+M++  V  D   ++ L+    +AG+  +  E +G ++  +
Sbjct: 650 AVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALID---VAGHAKMLDEAFGILQDAK 706

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
           ++G+ +L   +YS+++    +AK W+ AL++ E + S  + P   T ++LI A      +
Sbjct: 707 SQGI-RLGTISYSSLMGACCNAKDWKKALELYEKIKSIKLRPTISTMNALITALCEGNQL 765

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            +AM   +E+   G +PN+   ++L+ A      F+ +F+L 
Sbjct: 766 PKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDFEVSFKLL 807



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 32/253 (12%)

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--------DVFTYST 368
           KL +   M+++N+L+  C  +      Q+I G      A+GVL+L        D   Y+T
Sbjct: 460 KLILNPTMSTFNMLMSVCASS------QDIEG------ARGVLRLVQESGMTADCKLYTT 507

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++   A +       +V   M ++GV  N  T+ +LI+ CA AG V +A   +  +    
Sbjct: 508 LISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKN 567

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            +P+    N L+ AC ++   DRAF +              E +  + D IS       +
Sbjct: 568 VKPDRVVFNALISACGQSGAVDRAFDVLAEMK--------AETHPIDPDHISIGAL--MK 617

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
           +  N               ++  + T   Y I + +C    D+    ++  +M+   ++P
Sbjct: 618 ACCNAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTP 677

Query: 547 NHISWTILIDACG 559
           + + ++ LID  G
Sbjct: 678 DEVFFSALIDVAG 690


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 149/352 (42%), Gaps = 55/352 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           L  + +  F K  D+  A+      + +  SP       +I   G  G   ++ AI+E+L
Sbjct: 258 LLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEEL 317

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           +   +      +N+L+   V    LK    +   M++ G   D  +Y++L+ A   AG  
Sbjct: 318 KEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRW 377

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A+ +   +K +EA GV + + + +S I+  + D   WQ + +V  +M ++GV+P+   
Sbjct: 378 ESARIV---LKEMEASGV-RPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHF 433

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++ +I+       ++ A+  F+ M   G +P++   N L+    ++   ++A  LF +  
Sbjct: 434 YNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQ 493

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
            S                                                  P TTTYNI
Sbjct: 494 ESGCS-----------------------------------------------PCTTTYNI 506

Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           ++ +      +  VK L+ +M++ GL  N +++T L+D  G SG  + A++C
Sbjct: 507 MINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIEC 558



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 138/314 (43%), Gaps = 65/314 (20%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN---AHDLKFTL 309
           SP+ +    +ID  G C     + A ++ +R + V  +   +N+L++ +    H  K   
Sbjct: 428 SPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNK-AE 486

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL----EAKGVLKLDVFT 365
           E+++ MQ+ G      +YNI++       N+   QE + +VK L    +++G+L  +V T
Sbjct: 487 ELFEAMQESGCSPCTTTYNIMI-------NSFGEQERWEDVKTLLGKMQSQGLLA-NVVT 538

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+T+V ++  +  ++ A++  E M S G+ P++  +++LINA A  GL EQA++ F  M 
Sbjct: 539 YTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMR 598

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
             G +P+    N L+ A                          GED             +
Sbjct: 599 ADGLKPSVLVLNSLINA-------------------------FGED------------RR 621

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVG 543
           D ++ +             + K    KP   TY  LMKA      + +V A+  EM   G
Sbjct: 622 DAEAFS----------VLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSG 671

Query: 544 LSPNHISWTILIDA 557
            +P+  +  +L  A
Sbjct: 672 CTPDRKARAMLRSA 685


>gi|449018641|dbj|BAM82043.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
           10D]
          Length = 805

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 164/399 (41%), Gaps = 44/399 (11%)

Query: 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254
           F +  L V   D+   +  +    R+D      VRE    R L   L A   S +   + 
Sbjct: 322 FPVSNLNVADADLRSPLHRSASQHRSDGSLAPQVREIRSTRQLNKILSALYKSGRAADA- 380

Query: 255 NMYICRTI-------IDVC---------GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
            + +CR +       IDV          G CG   ++  ++  +    V  N + F++L 
Sbjct: 381 -LSLCRIVEREGHIEIDVASYSILISCLGKCGASAQAIEMFHKMIRNGVAPNAFTFSALF 439

Query: 299 NVNAHDLKFTLEVYKNMQKLGVM----ADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
                D  F  +  +  Q +        ++  YN +LK    AG    A ++ G+   +E
Sbjct: 440 GA-LTDGAFFDQAMRLFQMIRASYPNELNVVVYNAVLKYVGRAGRIDAALDLLGQ---ME 495

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
               ++ D+ TY TI+ + A  +   +A  V + M   G+ PN   ++SLI+ACA AGL 
Sbjct: 496 QNRNVQPDIVTYGTILDICAKKQDVSLAYAVLDRMRKRGMRPNNFCYASLIDACARAGLP 555

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG 474
           +QA  LF ++   G E +   CN LL A   A   +RAF+ F      ++    G+    
Sbjct: 556 DQAESLFRQLRAEGLEYDLFICNALLGAFARAKMVERAFQAFEEM---RSAGVRGDRITF 612

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILMKACCTDYYR- 531
           NT   +    ++            +  + +F+  K+ +     TTYN L+ AC       
Sbjct: 613 NTLITAAARAREF-----------DKAWKAFETMKKSNISADATTYNALIDACSKSGMTE 661

Query: 532 -VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              AL NEMR   L P   ++  LI AC    ++  A Q
Sbjct: 662 LAFALFNEMRQAHLQPTIFTFNALIGACTKLQDMRRATQ 700



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 107/230 (46%), Gaps = 6/230 (2%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
            KK+D+  A    D  +K    PN +   ++ID C   G   ++ +++  LR++ +  ++
Sbjct: 515 AKKQDVSLAYAVLDRMRKRGMRPNNFCYASLIDACARAGLPDQAESLFRQLRAEGLEYDL 574

Query: 292 YVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
           ++ N+L+     A  ++   + ++ M+  GV  D  ++N L+ A   A     A + +  
Sbjct: 575 FICNALLGAFARAKMVERAFQAFEEMRSAGVRGDRITFNTLITAAARAREFDKAWKAFET 634

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +K    K  +  D  TY+ ++   + +   ++A  +  +M  A + P   T+++LI AC 
Sbjct: 635 MK----KSNISADATTYNALIDACSKSGMTELAFALFNEMRQAHLQPTIFTFNALIGACT 690

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
               + +A  +   M   G  P++   NILL AC     FD A  L R +
Sbjct: 691 KLQDMRRATQVLMLMHGFGVYPDTFTLNILLTACARNEDFDYAISLVREF 740


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 131/291 (45%), Gaps = 36/291 (12%)

Query: 291 IYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           ++ +N+++N      K+     V   M K+G+  D A+YNILL  CC   N + A+ I+ 
Sbjct: 167 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFD 226

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E   + ++GV+  D+ ++S ++ + +       ALK   DM +AG+ P+ + ++ LI   
Sbjct: 227 E---MPSQGVVP-DLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGF 282

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT-------- 460
              G++ +A+ + +EML+ GC  +    N +L    +      A  LF   T        
Sbjct: 283 CRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDF 342

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
            + T +  G   DGN ++   +     Q                     + KP   TYN 
Sbjct: 343 YTFTTLINGYSKDGNMNKAVTLFEMMIQR--------------------NLKPDVVTYNT 382

Query: 521 LMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L+   C  ++  +V  L N+M +  + PNHIS+ ILI+     G V  A +
Sbjct: 383 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFR 433



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 148/339 (43%), Gaps = 24/339 (7%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVF 294
           L  AL+ +   K    +P+  I   +I   G C + + S A  + +++  Q   L++  +
Sbjct: 253 LDQALKYFRDMKNAGLAPDNVIYTILIG--GFCRNGVMSEALKVRDEMLEQGCVLDVVTY 310

Query: 295 NSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           N+++N    +  L    E++  M + GV  D  ++  L+      GN   A  ++     
Sbjct: 311 NTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLF----E 366

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +  +  LK DV TY+T++  F      +   ++  DM+S  + PN I++  LIN   N G
Sbjct: 367 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 426

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            V +A  L++EM++ G E     CN +++    A    +A   F S  L K  V  G  Y
Sbjct: 427 CVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE-FLSNMLLKGIVPDGITY 485

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRV 532
           +   +     E+ D+       N + NS            P   TYN+++          
Sbjct: 486 NTLINGFIKEENMDRAFA--LVNKMENS---------GLLPDVITYNVILNGFSRQGRMQ 534

Query: 533 KA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +A  +M +M   G++P+  ++T LI+      N++ A +
Sbjct: 535 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFR 573



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 135/312 (43%), Gaps = 65/312 (20%)

Query: 272 YMKSRAIYED------LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMAD 323
           Y+++R + E       L+S+ + ++I   NSL+   V    +    E+Y+ + + GV  +
Sbjct: 37  YVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVN 96

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           + + NI++ A C        +     +  +E KGV   DV TY+T++  +      + A 
Sbjct: 97  VYTLNIMINALC---KNQKIENTKSFLSDMEEKGVFP-DVVTYNTLINAYCRQGLLEEAF 152

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           ++ + M   G+ P   T++++IN     G   +A  + +EML+ G  P++   NILL   
Sbjct: 153 ELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL--- 209

Query: 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
           VE C+ D                        + +RI   +    Q +   P+ V      
Sbjct: 210 VECCRNDNMM---------------------DAERI--FDEMPSQGV--VPDLV------ 238

Query: 504 SFDKRFSFKPTTTTYNILMKACCTD----YYRVKALMNEMRTVGLSPNHISWTILIDACG 559
           SF         +    +L K  C D    Y+R      +M+  GL+P+++ +TILI    
Sbjct: 239 SF---------SALIGLLSKNGCLDQALKYFR------DMKNAGLAPDNVIYTILIGGFC 283

Query: 560 GSGNVEGALQCR 571
            +G +  AL+ R
Sbjct: 284 RNGVMSEALKVR 295



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 109/236 (46%), Gaps = 10/236 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYM-KSRAIYED 281
           F   +  + K  ++  A+  ++   +    P++    T+ID  G C G  M K   ++ D
Sbjct: 345 FTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLID--GFCKGSEMEKVNELWND 402

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S+ +  N   +  L+N   N   +     ++  M + G  A + + N ++K  C AGN
Sbjct: 403 MISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN 462

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            V A E    + ++  KG++  D  TY+T++  F   +    A  +   M ++G+ P+ I
Sbjct: 463 AVKADEF---LSNMLLKGIVP-DGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVI 518

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           T++ ++N  +  G +++A  +  +M++ G  P+      L+   V       AFR+
Sbjct: 519 TYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRV 574


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 156/355 (43%), Gaps = 37/355 (10%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
           F   +  +G+      A++ ++  K     PN+     +ID CG  G D+ ++  I++++
Sbjct: 223 FSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEM 282

Query: 283 RSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
               V  +   FNSL+ V       +    ++  M   G+  D+ +YN LL A C  G  
Sbjct: 283 LRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQM 342

Query: 341 VLAQEIYGEV--KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
            LA +I  E+  KH+        +V TYST++  +A A     AL +  +M  A +  + 
Sbjct: 343 DLAFQIMSEMPRKHIMP------NVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDR 396

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +++++L++  A  G  E+A+++ +EM  +G + ++   N LL    +  +++   R+F  
Sbjct: 397 VSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEE 456

Query: 459 WTLSK------TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
               +      T   L + Y         ME                  +  F K+   K
Sbjct: 457 MKAERIFPNLLTYSTLIDVYSKGGLYQEAME-----------------VFREF-KKAGLK 498

Query: 513 PTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVE 565
                Y+ L+ A C +     A+  ++EM   G+ PN +++  +IDA G SG+ E
Sbjct: 499 ADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAE 553



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 142/320 (44%), Gaps = 38/320 (11%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307
           +KH+  PN+    T+ID     G   ++  ++ +++  ++ L+   +N+L+++ A   +F
Sbjct: 354 RKHIM-PNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRF 412

Query: 308 --TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
              L V K M+  G+  D  +YN LL      G     + ++ E+K   A+ +   ++ T
Sbjct: 413 EEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMK---AERIFP-NLLT 468

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           YST++ V++    +Q A++V  +   AG+  + + +S+LI+A    GLVE A+   +EM 
Sbjct: 469 YSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMT 528

Query: 426 QAGCEPNSQCCNILLQA--------CVEACQFDRAFRLFRSWTL----SKTQVALGEDYD 473
           + G  PN    N ++ A        CV    ++       S +L      T+  +G+  D
Sbjct: 529 KEGIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSKMSSSSLKVVEDATESEVGDKED 588

Query: 474 GNTDRI-----------SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
               +I           +  E++ +Q I          H          KP   T++ ++
Sbjct: 589 NQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMH------ELDIKPNVVTFSAIL 642

Query: 523 KAC--CTDYYRVKALMNEMR 540
            AC  C  +     L+ E+R
Sbjct: 643 NACSRCNSFEDASMLLEELR 662



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 156/402 (38%), Gaps = 80/402 (19%)

Query: 210 AIRYACIVPRADILFCNF-------------VREFGKKRDLVSALRAYD--ASKKHLSSP 254
           AIR+A      D +  NF             +RE G + +   A+R ++    ++   + 
Sbjct: 124 AIRFASDDKGIDSVLLNFESRLCGSDDYTFLLRELGNRGEWAKAIRCFEFAVRREQRRNE 183

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVY 312
              +   +I + G  G    ++ ++E   ++     +Y F++L++           ++V+
Sbjct: 184 QGKLASAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVF 243

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M+  G+  ++ +YN ++ AC   G                           ++   ++
Sbjct: 244 ETMKSSGLKPNLVTYNAVIDACGKGG-------------------------VDFNRAAEI 278

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           F             ++ML  GV P+ IT++SL+  C   GL E A +LF EML  G E +
Sbjct: 279 F-------------DEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQD 325

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISNMEH 484
               N LL A  +  Q D AF++             ++ + V  G    G  D   N+ +
Sbjct: 326 IFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFN 385

Query: 485 KDKQSITNTPNFVPNSHYSSFDK--RF-------------SFKPTTTTYNILMKACCTD- 528
           + K +         N+  S + K  RF               K    TYN L+       
Sbjct: 386 EMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQG 445

Query: 529 -YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            Y  VK +  EM+   + PN ++++ LID     G  + A++
Sbjct: 446 KYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAME 487



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 27/221 (12%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           +GK+       R ++  K     PN+    T+IDV    G Y ++  ++ + +   +  +
Sbjct: 441 YGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKAD 500

Query: 291 IYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT--VLAQEI 346
           + ++++L++    +  ++  +     M K G+  ++ +YN ++ A   +G+   V+    
Sbjct: 501 VVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVIDPPY 560

Query: 347 YGEVKHLEAKGVLKLDVFTYS--------TIVKVFADAKWWQMALKVKED---------- 388
              V  + +  +  ++  T S         I+K+F      +     KE+          
Sbjct: 561 ETNVSKMSSSSLKVVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCIL 620

Query: 389 -----MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
                M    + PN +T+S+++NAC+     E A  L EE+
Sbjct: 621 AVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEEL 661


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 136/323 (42%), Gaps = 22/323 (6%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           + P ++    +ID     GD   +R ++E+++ + +  +   +NS+++       L  T+
Sbjct: 126 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 185

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
             ++ M+ +    D+ +YN L+   C  G   +  E Y E+K     G LK +V +YST+
Sbjct: 186 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK---GNG-LKPNVVSYSTL 241

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           V  F      Q A+K   DM   G+ PN  T++SLI+A    G +  A  L  EMLQ G 
Sbjct: 242 VDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGV 301

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ- 488
           E N      L+    +A +   A  LF     +     L   Y+         ++ D+  
Sbjct: 302 EWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLAS-YNALIHGFVKAKNMDRAL 360

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
            + N              K    KP    Y   +   C+       K +MNEM+  G+  
Sbjct: 361 ELLNEL------------KGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKA 408

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
           N + +T L+DA   SGN    L 
Sbjct: 409 NSLIYTTLMDAYFKSGNPTEGLH 431



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 141/355 (39%), Gaps = 56/355 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   V  F K+  +  A++ Y   ++    PN Y   ++ID     G+   +  +  +
Sbjct: 236 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNE 295

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    V  N+  + +L++   +A  +K   E++  M   GV+ ++ASYN L+     A N
Sbjct: 296 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 355

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A E+  E+K    +G+ K D+  Y T +      +  + A  V  +M   G+  N++
Sbjct: 356 MDRALELLNELK---GRGI-KPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSL 411

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +++L++A   +G   + +HL +EM +   E       +L+    +     +A   F   
Sbjct: 412 IYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYF--- 468

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                            +RISN                           F  +     + 
Sbjct: 469 -----------------NRISN--------------------------DFGLQANAAIFT 485

Query: 520 ILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            ++   C D  +V+A   L  +M   GL P+  ++T L+D     GNV  AL  R
Sbjct: 486 AMIDGLCKD-NQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALR 539



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 110/224 (49%), Gaps = 7/224 (3%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +++  +VP   + + + +  FGK   L   +  ++  K     P++     +I+     G
Sbjct: 156 MKFRGLVPDT-VTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFG 214

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYN 328
                   Y +++   +  N+  +++L++    +  ++  ++ Y +M+++G++ +  +Y 
Sbjct: 215 KLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYT 274

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            L+ A C  GN   A  +  E+  +   GV + +V TY+ ++    DA+  + A ++   
Sbjct: 275 SLIDANCKIGNLSDAFRLGNEMLQV---GV-EWNVVTYTALIDGLCDAERMKEAEELFGK 330

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           M +AGV PN  ++++LI+    A  +++A+ L  E+   G +P+
Sbjct: 331 MDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 374



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 81/169 (47%), Gaps = 13/169 (7%)

Query: 261 TIIDVC----GICGDYMKSRAI-YEDLRSQNVTL--NIYVFNSLMNVNAHD--LKFTLEV 311
           T++  C    G+C + + S+A+ Y +  S +  L  N  +F ++++    D  ++    +
Sbjct: 444 TVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTL 503

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M + G++ D  +Y  L+      GN + A  +  ++  +     +KLD+  Y+++V 
Sbjct: 504 FEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIG----MKLDLLAYTSLVW 559

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
             +     Q A    E+M+  G+ P+ +   S++      G +++A+ L
Sbjct: 560 GLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 608



 Score = 42.0 bits (97), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 49/172 (28%)

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P    + +L +   + G++E+A+  F +M +    P ++ CN LL    +  + D   R 
Sbjct: 58  PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 117

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           F      K  +  G                                          +PT 
Sbjct: 118 F------KDMIGAGA-----------------------------------------RPTV 130

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            TYNI++   C   D    + L  EM+  GL P+ +++  +ID  G  G ++
Sbjct: 131 FTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 182


>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
 gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
          Length = 1429

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 121/249 (48%), Gaps = 6/249 (2%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +R + + P A I +   +    +  +L  A++ ++  + H   P+++    +I V G CG
Sbjct: 288 VRNSGLRPDA-ITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCG 346

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYN 328
              ++  ++ +L  +  + +   +NSL+   A +   +   EVY+ MQK+G   D  +YN
Sbjct: 347 LAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYN 406

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            ++      G   LA ++Y ++K L  +     D  TY+ ++     A     A  +  +
Sbjct: 407 TIIHMYGKQGQLDLALQLYKDMKGLSGRNP---DAITYTVLIDSLGKANRSVEAAALMSE 463

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           ML  G+ P   T+S+LI   A AG  E+A   F  ML++G +P++   +++L   +   +
Sbjct: 464 MLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNE 523

Query: 449 FDRAFRLFR 457
             +A+ L+R
Sbjct: 524 TRKAWVLYR 532



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 153/351 (43%), Gaps = 24/351 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYD-ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +C  V+  G++     AL  ++  + +H  SPN    R +  + G+ G + +     E  
Sbjct: 159 YCFVVKSVGQE-SWQRALEVFEWLNLRHWHSPN---ARMVAAILGVLGRWNQESLAVEIF 214

Query: 283 RSQNVTLN--IYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAG 338
                T+   + V+N++M V +   KF+   E+   M++ G + D+ S+N L+ A   +G
Sbjct: 215 TRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELLDAMRQRGCVPDLISFNTLINARLKSG 274

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
              L   +  E+  +     L+ D  TY+T++   +     + A+KV EDM +    P+ 
Sbjct: 275 G--LTPNLVVELLDMVRNSGLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDL 332

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            T++++I+     GL  +A  LF E+   G  P++   N LL A       ++   +++ 
Sbjct: 333 WTYNAMISVYGRCGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQ 392

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
                 ++  G+D +   + I +M  K  Q        +    Y          P   TY
Sbjct: 393 ----MQKMGFGKD-EMTYNTIIHMYGKQGQLD------LALQLYKDMKGLSGRNPDAITY 441

Query: 519 NILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            +L+ +       V+A  LM+EM  VG+ P   +++ LI     +G  E A
Sbjct: 442 TVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEA 492



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 117/252 (46%), Gaps = 14/252 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-DLKFTLE-V 311
           P+     T++  C    +   +  ++ED+ +     +++ +N++++V     L    E +
Sbjct: 295 PDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERL 354

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  ++  G   D  +YN LL A     NT   +E+Y +++ +   G  K D  TY+TI+ 
Sbjct: 355 FIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM---GFGK-DEMTYNTIIH 410

Query: 372 VFADAKWWQMALKVKEDMLS-AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           ++       +AL++ +DM   +G  P+ IT++ LI++   A    +A  L  EML  G +
Sbjct: 411 MYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIK 470

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ-------VALGEDYDGNTDRISNME 483
           P  Q  + L+    +A + + A   F     S T+       V L     GN  R + + 
Sbjct: 471 PTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWVL 530

Query: 484 HKDKQSITNTPN 495
           ++D  S  +TP+
Sbjct: 531 YRDMISDGHTPS 542



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
           Y  V   E KG        Y+ I++ +   K WQ A  V  ++  +G TP+  TW+SL++
Sbjct: 736 YQVVNQAETKGFHFACSPMYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMS 795

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEA 446
           A A  G  E+A  +F  M++ G  P  +  N LL A CV+ 
Sbjct: 796 AYAECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDG 836



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/398 (18%), Positives = 159/398 (39%), Gaps = 60/398 (15%)

Query: 223  LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
            ++ + +  +GK +    A       ++   +P++    +++     CG Y ++RAI+  +
Sbjct: 754  MYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTM 813

Query: 283  RSQNVTLNIYVFNSLMNVNAHDLKFTLEVY---KNMQKLGVMADMASYNILLKACCLAGN 339
                 +  +   N L++    D +   E+Y   + +Q +G     +S  ++L A   AGN
Sbjct: 814  MRDGPSPTVESINKLLHALCVDGRLE-ELYVVVEELQDMGFKISKSSILLMLDAFARAGN 872

Query: 340  TVLAQEIYGEVK---------------HLEAKGV----------------LKLDVFTYST 368
                 +IY  +K                L  KG                  K+++  +++
Sbjct: 873  IFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNS 932

Query: 369  IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            ++K++   + ++  ++V + +  +G+ P+  T+++LI         E+   L ++M   G
Sbjct: 933  MLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLG 992

Query: 429  CEPNSQCCNILL-----QACVEACQ------FDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
             +P       L+     Q C+E  +        +  +L RS+  +  +++     D   +
Sbjct: 993  LDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052

Query: 478  R-ISNMEHKDKQSITNTPNFVPNSHYSSFD-----------KRFSFKPTTTTYNILMKAC 525
            + +  M++   +    T + +  S+ SS +           K    + TT  Y+ ++ A 
Sbjct: 1053 KLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTTLPYSSVIDAY 1112

Query: 526  --CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561
                DY      + EM+  GL P+H  WT  + A   S
Sbjct: 1113 LRSKDYKSGIERLLEMKKEGLEPDHRIWTCFVRAASFS 1150



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/178 (17%), Positives = 87/178 (48%), Gaps = 8/178 (4%)

Query: 254  PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN---AHDLKFTLE 310
            P +   +++I   G      ++  ++E+L S+ + L+   ++++M ++     D K   +
Sbjct: 995  PKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE-K 1053

Query: 311  VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            + + M+  G+   +A+ ++L+ +   +GN   A+++   +K+ E    ++L    YS+++
Sbjct: 1054 LLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTE----VELTTLPYSSVI 1109

Query: 371  KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
              +  +K ++  ++   +M   G+ P+   W+  + A + +    + M L + +   G
Sbjct: 1110 DAYLRSKDYKSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKSEVMLLLKALQDIG 1167


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 32/326 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +P+++    +ID     GD   SR ++  +R   ++ ++  +NSL++       L+    
Sbjct: 286 APSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVAS 345

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M+ +G + D+ +YN L+   C       A E + E+K+      LK +V TYST++
Sbjct: 346 LFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKN----NGLKPNVVTYSTLI 401

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F      Q A+K+  DM   G+ PN  T++SLI+A   AG + +A  L  +MLQAG +
Sbjct: 402 DAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVK 461

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQ---VALGEDYDGNTDRISNMEH 484
            N      LL    +A +   A  +FRS     +S  Q    AL   Y    +R+ +   
Sbjct: 462 LNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYI-KAERMEDAMK 520

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTV 542
             KQ                     + KP    Y  ++   C+       K ++ EM++ 
Sbjct: 521 ILKQM-----------------TECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSR 563

Query: 543 GLSPNHISWTILIDACGGSGNVEGAL 568
           G+S N +  T +IDA   +G    AL
Sbjct: 564 GISANPVISTTIIDAYFKAGKSSDAL 589



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 164/378 (43%), Gaps = 49/378 (12%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K+ DL ++ R +   ++   SP++    ++ID  G  G   +  +++ +++      +I 
Sbjct: 301 KEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDII 360

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +N L+N       +    E +  M+  G+  ++ +Y+ L+ A C  G    A +++ ++
Sbjct: 361 TYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDM 420

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           +     G+L  + FTY++++     A     A K+  DML AGV  N +T+++L++    
Sbjct: 421 RR---TGLLP-NEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCK 476

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVA 467
           AG + +A  +F  ML+ G  PN Q    L+   ++A + + A ++ +  T   +    + 
Sbjct: 477 AGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLIL 536

Query: 468 LGEDYDGNTDRIS------NMEHKDKQSITNTP---NFVPNSHYSSFD-----------K 507
            G    G+  +         +E    + I+  P     + ++++ +             +
Sbjct: 537 YGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQ 596

Query: 508 RFSFKPTTTTYNILMKACC--------TDYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
               + T  TY +L+   C         DY+        M ++GL PN   +T LID   
Sbjct: 597 DVGVEATIVTYCVLIDGLCKAGIVELAVDYF------CRMLSLGLQPNVAVYTSLIDGLC 650

Query: 560 GSGNVEGA------LQCR 571
            +  +E A      +QCR
Sbjct: 651 KNNCIESAKKLFDEMQCR 668



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 143/356 (40%), Gaps = 30/356 (8%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--Y 279
           I +   +  + K   +  A   +   K +   PN+    T+ID    C + M   AI  +
Sbjct: 360 ITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLID--AFCKEGMMQGAIKLF 417

Query: 280 EDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
            D+R   +  N + + SL++ N  A +L    ++  +M + GV  ++ +Y  LL   C A
Sbjct: 418 VDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKA 477

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G  + A+E++  +     K  +  +   Y+ +V  +  A+  + A+K+ + M    + P+
Sbjct: 478 GRMIEAEEVFRSM----LKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD 533

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            I + S+I    +   +E+   + EEM   G   N      ++ A  +A +   A   F+
Sbjct: 534 LILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQ 593

Query: 458 SWT---LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
                 +  T V      DG            K  I           Y         +P 
Sbjct: 594 EMQDVGVEATIVTYCVLIDGLC----------KAGIVELA-----VDYFCRMLSLGLQPN 638

Query: 515 TTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
              Y  L+   C +      K L +EM+  G++P+  ++T LID     GN++ AL
Sbjct: 639 VAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEAL 694



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 53/260 (20%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E +  M+    +    S N LL     +GN  L ++ + +   +   G+    VFTY+ +
Sbjct: 240 ECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFND---MIGAGIAP-SVFTYNVM 295

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + + ++   M   G++P+ +T++SLI+     G +E+   LF EM   GC
Sbjct: 296 IDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGC 355

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            P+    N L+      C+F++  R F                                 
Sbjct: 356 VPDIITYNGLINC---YCKFEKMPRAF--------------------------------- 379

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
                       Y S  K    KP   TY+ L+ A C +     A  L  +MR  GL PN
Sbjct: 380 -----------EYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPN 428

Query: 548 HISWTILIDACGGSGNVEGA 567
             ++T LIDA   +GN+  A
Sbjct: 429 EFTYTSLIDANCKAGNLTEA 448



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 41/219 (18%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +++ I E+++S+ ++ N  +  ++++    A      L  ++ MQ +GV A + +Y +L+
Sbjct: 552 ETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLI 611

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C AG   LA + +  +  L     L+ +V  Y++++         + A K+ ++M  
Sbjct: 612 DGLCKAGIVELAVDYFCRMLSLG----LQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQC 667

Query: 392 AGVTPNTI-----------------------------------TWSSLINACANAGLVEQ 416
            G+TP+                                      ++SL++  +  G + Q
Sbjct: 668 RGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQ 727

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           A   F EM++ G  P    C  LL+   +  Q D A  L
Sbjct: 728 ARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIEL 766


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 168/389 (43%), Gaps = 50/389 (12%)

Query: 208 NLAIRYACIVPRADILFCNFVREFGKK------RDLVSAL----------RAYDASKKHL 251
           NL I  AC V R        V+++G K        L+SAL            Y    K  
Sbjct: 143 NLEIHSACEVFRR-------VQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRR 195

Query: 252 SSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN-----AHD 304
             PN+      I+  G+C  G   K+  + ED+++   + NI  +N+L++ +     A  
Sbjct: 196 IQPNLTTFNIFIN--GLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGK 253

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           +     + K M    +  +  ++N L+   C   N + A+  + E++    +  LK ++ 
Sbjct: 254 MYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQ----RQGLKPNIV 309

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY++++   ++      A+ + + M+  G+ PN +T+++LIN      ++++A  LF+++
Sbjct: 310 TYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDI 369

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
            +    PN+   N ++ A  +A   +  F L  S         L E    N    + +  
Sbjct: 370 AEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNS--------MLDEGIFPNVSTYNCL-- 419

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTV 542
                +    N        +  + +  K    TYNIL+   C D    KA  L+ EM  V
Sbjct: 420 --IAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNV 477

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           G+ PNH+++  L+D     GN++ AL+ R
Sbjct: 478 GVKPNHVTYNTLMDGYCMEGNLKAALKVR 506



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 106/207 (51%), Gaps = 10/207 (4%)

Query: 254 PNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           PN+     +I+  G C   M  ++R +++D+  Q++  N   FN++++    A  ++   
Sbjct: 341 PNIVTFNALIN--GFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGF 398

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            ++ +M   G+  ++++YN L+   C   N   A+++  E+++ E    LK DV TY+ +
Sbjct: 399 ALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYE----LKADVVTYNIL 454

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +        A K+  +ML+ GV PN +T+++L++     G ++ A+ +  +M + G 
Sbjct: 455 IGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGK 514

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF 456
             N    N+L++   +  + + A RL 
Sbjct: 515 RANVVTYNVLIKGFCKTGKLEDANRLL 541



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 99/213 (46%), Gaps = 6/213 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   +  F KK+ +  A + +D   +    PN     T+ID     G   +  A++  
Sbjct: 344 VTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNS 403

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  N+  +N L+       +++   ++   M+   + AD+ +YNIL+   C  G 
Sbjct: 404 MLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGE 463

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+++ GE+ ++   GV K +  TY+T++  +      + ALKV+  M   G   N +
Sbjct: 464 PSKAEKLLGEMLNV---GV-KPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVV 519

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           T++ LI      G +E A  L  EML+ G  PN
Sbjct: 520 TYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPN 552


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 150/360 (41%), Gaps = 63/360 (17%)

Query: 222 ILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           I++ + ++ F   G+K D     + Y        SP++ +  T +D     G+  K RA+
Sbjct: 483 IVYTSLIKNFFNHGRKED---GHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539

Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           +E+++S+    +   ++ L++  + A     T E++ +M++ G + D  +YNI++   C 
Sbjct: 540 FEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCK 599

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G    A ++  E+K    KG  +  V TY +++   A       A  + E+  S  +  
Sbjct: 600 CGKVNKAYQLLEEMK---TKG-FEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL 655

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N + +SSLI+     G +++A  + EE++Q G  PN    N LL A V+A + + A   F
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCF 715

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
           +S                                                K     P   
Sbjct: 716 QSM-----------------------------------------------KELKCTPNQV 728

Query: 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV--EGALQCRF 572
           TY IL+   C    + +      EM+  G+ P+ IS+T +I     +GN+   GAL  RF
Sbjct: 729 TYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRF 788



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 41/222 (18%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           L  A   ++ +K      N+ I  ++ID  G  G   ++  I E+L  + +T N+Y +NS
Sbjct: 638 LDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNS 697

Query: 297 LMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           L++  V A ++   L  +++M++L    +  +Y IL+   C                   
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLC------------------- 738

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
                K+  F  + +        +WQ       +M   G+ P+TI+++++I+  A AG +
Sbjct: 739 -----KVRKFNKAFV--------FWQ-------EMQKQGMKPSTISYTTMISGLAKAGNI 778

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            +A  LF+     G  P+S C N +++      +   AF LF
Sbjct: 779 AEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLF 820



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 7/236 (2%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           LF   +R F K+  + SAL   D  K      ++ +    ID  G  G    +   + ++
Sbjct: 205 LFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEI 264

Query: 283 RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            +  +  +   + S++ V   A+ L   +E++++++K   +    +YN ++     AG  
Sbjct: 265 EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKF 324

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
               E Y  ++   AKG +   V  Y+ I+           AL+V E+M      PN  T
Sbjct: 325 ---DEAYSLLERQRAKGSIP-SVIAYNCILTCLRKMGKVDEALRVFEEM-KKDAAPNLST 379

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           ++ LI+    AG ++ A  L + M +AG  PN +  NI++    ++ + D A  +F
Sbjct: 380 YNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIF 435



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 122/289 (42%), Gaps = 31/289 (10%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E+++ ++   N+  +N L+++   A  L    E+  +MQK G+  ++ + NI++   C
Sbjct: 365 VFEEMK-KDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLC 423

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +     A  I+ ++ +     V   D  T+ +++           A K+ E ML +   
Sbjct: 424 KSQKLDEACAIFEQMDY----KVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCR 479

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            N+I ++SLI    N G  E    ++++M+   C P+ Q  N  +    +A + ++   +
Sbjct: 480 TNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT- 514
           F     S+  V     Y       S + H   ++         N  Y  F   +S K   
Sbjct: 540 FEEIK-SRRFVPDARSY-------SILIHGLIKA------GFANETYELF---YSMKEQG 582

Query: 515 ----TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
               T  YNI++   C      +   L+ EM+T G  P  +++  +ID 
Sbjct: 583 CVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDG 631



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 116/295 (39%), Gaps = 32/295 (10%)

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           VN  D+  TL  ++ MQ+LG    +  +  L++     G    A  +  E+K       L
Sbjct: 181 VNHSDMMLTL--FQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMK----SSSL 234

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             D+  Y+  +  F       MA K   ++ + G+ P+ +T++S+I     A  +++A+ 
Sbjct: 235 DADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVE 294

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD------ 473
           +FE + +    P +   N ++     A +FD A+ L      +K  +     Y+      
Sbjct: 295 MFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQR-AKGSIPSVIAYNCILTCL 353

Query: 474 ---GNTD---RISNMEHKDKQSITNTPNFVPN--SHYSSFDKRFSFK---------PTTT 516
              G  D   R+     KD     +T N + +        D  F  +         P   
Sbjct: 354 RKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVR 413

Query: 517 TYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           T NI++   C         A+  +M     +P+ I++  LID  G  G V+ A +
Sbjct: 414 TVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYK 468


>gi|297798436|ref|XP_002867102.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312938|gb|EFH43361.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1094

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 129/307 (42%), Gaps = 57/307 (18%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLE 310
           N++    +ID C   G   K+   Y  LRS+NV  +  VFN+L++      A D  F + 
Sbjct: 541 NLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 600

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
                +   +  D  +   L+KACC AG    A+E+Y  +     +G  ++    Y+  V
Sbjct: 601 AEMKAETHPIDPDHITIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEV----YTIAV 656

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
              + +  W  A  + +DM    VTP+ + +S+LI+   +A ++++A  + ++    G  
Sbjct: 657 NSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIR 716

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
             +   + L+ AC  A  + +A  L+    L K                           
Sbjct: 717 LGTVSYSSLMGACCNAKDWKKALELYEKIKLIK--------------------------- 749

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNH 548
                                +PT +T N L+ A C      KA+  ++E++T+GL PN 
Sbjct: 750 --------------------LRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNT 789

Query: 549 ISWTILI 555
           I++++L+
Sbjct: 790 ITYSMLM 796



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 106/222 (47%), Gaps = 11/222 (4%)

Query: 242 RAYDA-----SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           RA+D      ++ H   P+      ++  C   G   +++ +Y+ +    +     V+  
Sbjct: 595 RAFDVLAEMKAETHPIDPDHITIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTI 654

Query: 297 LMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
            +N    + D  F   +YK+M++  V  D   ++ L+    +AG+  +  E +G ++  +
Sbjct: 655 AVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALID---VAGHAKMLDEAFGILQDAK 711

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
           ++G+ +L   +YS+++    +AK W+ AL++ E +    + P   T ++LI A      +
Sbjct: 712 SQGI-RLGTVSYSSLMGACCNAKDWKKALELYEKIKLIKLRPTISTMNALITALCEGNQL 770

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            +AM   +E+   G +PN+   ++L+ A      F+ +F+L 
Sbjct: 771 PKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDFEVSFKLL 812



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 101/257 (39%), Gaps = 67/257 (26%)

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--------DVFTYST 368
           KL +   M+++N+L+  C  +      Q+I G      A+GVL+L        D   Y+T
Sbjct: 465 KLILNPTMSTFNMLMSVCASS------QDIEG------ARGVLRLVQESGMTADCKLYTT 512

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++   A +       +V   M ++GV  N  T+ +LI+ CA AG V +A   +  +    
Sbjct: 513 LISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKN 572

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            +P+    N L+ AC ++   DRAF                       D ++ M+ +   
Sbjct: 573 VKPDRVVFNALISACGQSGAVDRAF-----------------------DVLAEMKAE--- 606

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
                      +H           P   T   LMKACC      R K +   +   G+  
Sbjct: 607 -----------TH--------PIDPDHITIGALMKACCNAGQVERAKEVYQMIHKYGIRG 647

Query: 547 NHISWTILIDACGGSGN 563
               +TI +++C  SG+
Sbjct: 648 TPEVYTIAVNSCSKSGD 664


>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
 gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
          Length = 1001

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 12/239 (5%)

Query: 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           A I  C   ++  +  +L+  +R+ +  +      N++    +++VC  CG    +  IY
Sbjct: 149 ATISLCIHGQDVDRALELMQEMRSRNIER------NVHTYTALMNVCIKCGKLPLALDIY 202

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
             +R+ N   N+  +N+L++V       +  + V   M+  GV   + +YN L+ AC + 
Sbjct: 203 NSMRAVNCMPNVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMC 262

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
                A  +Y   + L + G    +  TY+ ++  +        AL+V ++ML   +  +
Sbjct: 263 NQPREALAVY---QRLLSDG-FTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRS 318

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            IT+SSLI+AC  AG  E A+ +F EM Q  C PN+   N L+ AC +  Q+++A  +F
Sbjct: 319 VITYSSLISACEKAGQWETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVF 377



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 160/362 (44%), Gaps = 61/362 (16%)

Query: 218 PRADILFCNF---VREFGKKR---DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271
           P  +++F      +   GK R   +L   LR+ +      +  ++Y     I +C    D
Sbjct: 100 PLPEVIFRALHHDLSRLGKDRRAMELFDWLRSANERSPLRALCDVYSYTATISLCIHGQD 159

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNI 329
             ++  + +++RS+N+  N++ + +LMNV      L   L++Y +M+ +  M ++ +YN 
Sbjct: 160 VDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYNT 219

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           L+      G    A  +   +KH   + VL+    TY+T++         + AL V + +
Sbjct: 220 LVDVYGKLGQWERAIHVLDVMKHEGVEPVLR----TYNTLIIACNMCNQPREALAVYQRL 275

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
           LS G TPN+ T+++LI+A      + +A+ +++EML+   + +    + L+ AC +A Q+
Sbjct: 276 LSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQW 335

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
           + A R+F                        N   +DK         VPN          
Sbjct: 336 ETALRIF------------------------NEMQQDK--------CVPN---------- 353

Query: 510 SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                T TYN L+ AC     + +   +  +M   G +P+ +++T LI A    G  + A
Sbjct: 354 -----TVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAYERGGQWQKA 408

Query: 568 LQ 569
           LQ
Sbjct: 409 LQ 410



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 144/317 (45%), Gaps = 23/317 (7%)

Query: 155 FKLLKNECQRL-LDSGEVEMFVGLMEVLEEFRLPVKELDEEFR---IVQLCVNKPDVNLA 210
           F+ L ++  RL  D   +E+F  L    E  R P++ L + +     + LC++  DV+ A
Sbjct: 106 FRALHHDLSRLGKDRRAMELFDWLRSANE--RSPLRALCDVYSYTATISLCIHGQDVDRA 163

Query: 211 IRYACIVPRADI--------LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTI 262
           +     +   +I           N   + GK   L  AL  Y++ +     PN+    T+
Sbjct: 164 LELMQEMRSRNIERNVHTYTALMNVCIKCGK---LPLALDIYNSMRAVNCMPNVVTYNTL 220

Query: 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGV 320
           +DV G  G + ++  + + ++ + V   +  +N+L+      +  +  L VY+ +   G 
Sbjct: 221 VDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGF 280

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             +  +YN L+ A         A E+Y E+     +  +   V TYS+++     A  W+
Sbjct: 281 TPNSTTYNALISAYGKTTQLGKALEVYQEM----LRQNMDRSVITYSSLISACEKAGQWE 336

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            AL++  +M      PNT+T++SL+ ACA  G  E+A  +FE+M   GC P+      L+
Sbjct: 337 TALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALI 396

Query: 441 QACVEACQFDRAFRLFR 457
            A     Q+ +A + F 
Sbjct: 397 SAYERGGQWQKALQAFH 413



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 6/226 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   V  +GK      A+   D  K     P +    T+I  C +C    ++ A+Y+ 
Sbjct: 215 VTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQR 274

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           L S   T N   +N+L++       L   LEVY+ M +  +   + +Y+ L+ AC  AG 
Sbjct: 275 LLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQ 334

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  I+ E++  + K V   +  TY+++V   A    W+ A +V E M + G TP+ +
Sbjct: 335 WETALRIFNEMQ--QDKCVP--NTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVV 390

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
           T+++LI+A    G  ++A+  F +M   GC+P++   N ++    E
Sbjct: 391 TYTALISAYERGGQWQKALQAFHKMCVQGCKPDAIVYNAIIDTLWE 436



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 18/210 (8%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
            CN  RE         AL  Y        +PN      +I   G      K+  +Y+++ 
Sbjct: 261 MCNQPRE---------ALAVYQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEML 311

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            QN+  ++  ++SL++    A   +  L ++  MQ+   + +  +YN L+ AC   G   
Sbjct: 312 RQNMDRSVITYSSLISACEKAGQWETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWE 371

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A E++   + + A G    DV TY+ ++  +     WQ AL+    M   G  P+ I +
Sbjct: 372 KAAEVF---EQMNAHGCTP-DVVTYTALISAYERGGQWQKALQAFHKMCVQGCKPDAIVY 427

Query: 402 SSLINACANAGLV---EQAMHLFEEMLQAG 428
           +++I+     G++    +A+ LF   +Q G
Sbjct: 428 NAIIDTLWETGIIWAQGKALQLFMTAVQQG 457


>gi|384249299|gb|EIE22781.1| hypothetical protein COCSUDRAFT_47692 [Coccomyxa subellipsoidea
           C-169]
          Length = 1226

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 104/204 (50%), Gaps = 6/204 (2%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVY 312
           N++    +++VC  CG    +  ++ED++   +  N+  +N+L++V       +  L+V 
Sbjct: 170 NVHTHSALMNVCIKCGQLKLALDVWEDMQRDGIVPNVVTYNTLIDVYGKLGQWEQALQVL 229

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M+  G+     +YN L+ AC  +G    A ++Y E++   A G   L+  +Y+ ++  
Sbjct: 230 RRMKFQGIEPVTRTYNTLMIACNTSGQWQTALQLYEEMR---AAG-HALNTTSYNALISA 285

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
            + A      L     M+  G   + IT+SSLI+AC  +G  + A+  F+E L+  C PN
Sbjct: 286 HSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFDECLKDNCRPN 345

Query: 433 SQCCNILLQACVEACQFDRAFRLF 456
               N L+ AC +  Q+++A  LF
Sbjct: 346 VITFNSLITACAQGAQWEKARELF 369



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 6/207 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           PN+    T+IDV G  G + ++  +   ++ Q +      +N+LM     +   +  L++
Sbjct: 204 PNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNTSGQWQTALQL 263

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y+ M+  G   +  SYN L+ A   AG+     + Y   + +  +G  +  V TYS+++ 
Sbjct: 264 YEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDTY---RQMVQQGCER-SVITYSSLIS 319

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               +  WQ+AL+  ++ L     PN IT++SLI ACA     E+A  LFE M Q GC P
Sbjct: 320 ACEKSGEWQLALRFFDECLKDNCRPNVITFNSLITACAQGAQWEKARELFELMQQQGCTP 379

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRS 458
           +      L+ A     ++  A + F++
Sbjct: 380 DVVTYTALISAYERGGKWQLALQAFQA 406



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 146/329 (44%), Gaps = 73/329 (22%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVY 312
           ++Y     I +C       ++  +  D++ + V  N++  ++LMNV      LK  L+V+
Sbjct: 135 DVYTYTAAISICVSAQQLERALELSADMQRRGVQRNVHTHSALMNVCIKCGQLKLALDVW 194

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE-AKGVLKLDVF------- 364
           ++MQ+ G++ ++ +YN L+             ++YG++   E A  VL+   F       
Sbjct: 195 EDMQRDGIVPNVVTYNTLI-------------DVYGKLGQWEQALQVLRRMKFQGIEPVT 241

Query: 365 -TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY+T++     +  WQ AL++ E+M +AG   NT ++++LI+A + AG + Q +  + +
Sbjct: 242 RTYNTLMIACNTSGQWQTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDTYRQ 301

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M+Q GCE +    + L+ AC ++ ++  A R F                           
Sbjct: 302 MVQQGCERSVITYSSLISACEKSGEWQLALRFFDECL----------------------- 338

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRT 541
            KD        N  PN                 T+N L+ AC     + + + L   M+ 
Sbjct: 339 -KD--------NCRPN---------------VITFNSLITACAQGAQWEKARELFELMQQ 374

Query: 542 VGLSPNHISWTILIDACGGSGNVEGALQC 570
            G +P+ +++T LI A    G  + ALQ 
Sbjct: 375 QGCTPDVVTYTALISAYERGGKWQLALQA 403



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 108/227 (47%), Gaps = 7/227 (3%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           IVP   + +   +  +GK      AL+     K     P      T++  C   G +  +
Sbjct: 202 IVPNV-VTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNTSGQWQTA 260

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
             +YE++R+    LN   +N+L++ +  A DL   L+ Y+ M + G    + +Y+ L+ A
Sbjct: 261 LQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISA 320

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
           C  +G   LA   + E      K   + +V T+++++   A    W+ A ++ E M   G
Sbjct: 321 CEKSGEWQLALRFFDEC----LKDNCRPNVITFNSLITACAQGAQWEKARELFELMQQQG 376

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            TP+ +T+++LI+A    G  + A+  F+ M   GC+P+S   N ++
Sbjct: 377 CTPDVVTYTALISAYERGGKWQLALQAFQAMQAKGCKPDSIVYNAII 423



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 94/242 (38%), Gaps = 57/242 (23%)

Query: 330 LLKACCLAGNTVLAQEIYGEVKHL--EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           LLK     G    AQE +  V  L    +     DV+TY+  + +   A+  + AL++  
Sbjct: 101 LLKELARTGLAHRAQEFFDHVLALGDSTEAARLADVYTYTAAISICVSAQQLERALELSA 160

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           DM   GV  N  T S+L+N C   G ++ A+ ++E+M + G  PN    N L+    +  
Sbjct: 161 DMQRRGVQRNVHTHSALMNVCIKCGQLKLALDVWEDMQRDGIVPNVVTYNTLIDVYGKLG 220

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
           Q+++A ++ R                                                  
Sbjct: 221 QWEQALQVLR-------------------------------------------------- 230

Query: 508 RFSFK---PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
           R  F+   P T TYN LM AC T   +     L  EMR  G + N  S+  LI A   +G
Sbjct: 231 RMKFQGIEPVTRTYNTLMIACNTSGQWQTALQLYEEMRAAGHALNTTSYNALISAHSKAG 290

Query: 563 NV 564
           ++
Sbjct: 291 DL 292


>gi|298707694|emb|CBJ26011.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1173

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 127/250 (50%), Gaps = 16/250 (6%)

Query: 217 VPRADILFCNFVRE---FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
            P  D+L    V +   +GK+     A+R  D       +PN+ +  T +  C  CG   
Sbjct: 259 APAPDLLLYAVVMKACAWGKR--WQQAIRLLDDMSAAGVAPNVVVVNTALSACAKCGQVS 316

Query: 274 KSRAIYEDLRSQ-NVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKL-GVMADMASYNI 329
           ++  + ++++ +  V   +  +NS+++ +  A + +  L + K M++  GV+ ++ ++N 
Sbjct: 317 RATQLLQEMQEKYGVAPEVRSYNSVISGHERAGEWREALALAKRMEQADGVLPNVVTFNS 376

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           ++ AC  AG    A  + G ++    KG L+ DV ++++ +   A    W++AL++ E M
Sbjct: 377 VIGACKTAGRPEEALAVLGMLRR---KG-LQPDVISFNSAIGACASGGKWEVALQLLELM 432

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE---PNSQCCNILLQACVEA 446
            S GVTP+ +T++  ++AC   G  E AM LF+E++ +G E   P+    N L+    +A
Sbjct: 433 PSEGVTPDLMTYNIALDACVKGGQWEMAMSLFDELVASGDESLRPDLYTYNTLMTVFSDA 492

Query: 447 CQFDRAFRLF 456
               RA  L 
Sbjct: 493 GMLPRALELL 502



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 138/308 (44%), Gaps = 23/308 (7%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLE 310
           +P++ +   ++  C     + ++  + +D+ +  V  N+ V N+ ++  A    +    +
Sbjct: 261 APDLLLYAVVMKACAWGKRWQQAIRLLDDMSAAGVAPNVVVVNTALSACAKCGQVSRATQ 320

Query: 311 VYKNMQ-KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE-AKGVLKLDVFTYST 368
           + + MQ K GV  ++ SYN ++     AG     +E     K +E A GVL  +V T+++
Sbjct: 321 LLQEMQEKYGVAPEVRSYNSVISGHERAGEW---REALALAKRMEQADGVLP-NVVTFNS 376

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++     A   + AL V   +   G+ P+ I+++S I ACA+ G  E A+ L E M   G
Sbjct: 377 VIGACKTAGRPEEALAVLGMLRRKGLQPDVISFNSAIGACASGGKWEVALQLLELMPSEG 436

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
             P+    NI L ACV+  Q++ A  LF     S  +    + Y  NT            
Sbjct: 437 VTPDLMTYNIALDACVKGGQWEMAMSLFDELVASGDESLRPDLYTYNT----------LM 486

Query: 489 SITNTPNFVPNS-HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK----ALMNEMRTVG 543
           ++ +    +P +       K    +P   TY+ L++AC             L+++M   G
Sbjct: 487 TVFSDAGMLPRALELLEEAKAKRLRPDVVTYSTLIRACERSMPSQPDVALKLVSDMEAEG 546

Query: 544 LSPNHISW 551
           + PN+ ++
Sbjct: 547 VRPNNTTY 554



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 118/309 (38%), Gaps = 75/309 (24%)

Query: 290 NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
            I ++N+ +         +  L V++ MQ  GV  D  SY  ++ AC   G    A  + 
Sbjct: 165 RIALYNTALRALDRCKKWRLALSVFREMQSDGVDPDRDSYFFVMSACSKRGEAKTALALL 224

Query: 348 GEVKHL------------------------EAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
            E+K                          +  G    D+  Y+ ++K  A  K WQ A+
Sbjct: 225 AEMKARRRQQQQQQQQQRAGGGPGGYGEVEDEDGAPAPDLLLYAVVMKACAWGKRWQQAI 284

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCNILLQA 442
           ++ +DM +AGV PN +  ++ ++ACA  G V +A  L +EM +  G  P  +  N ++  
Sbjct: 285 RLLDDMSAAGVAPNVVVVNTALSACAKCGQVSRATQLLQEMQEKYGVAPEVRSYNSVISG 344

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
              A ++  A  L +                        ME  D          +PN   
Sbjct: 345 HERAGEWREALALAK-----------------------RMEQAD--------GVLPN--- 370

Query: 503 SSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGG 560
                         T+N ++ AC T     +AL  +  +R  GL P+ IS+   I AC  
Sbjct: 371 ------------VVTFNSVIGACKTAGRPEEALAVLGMLRRKGLQPDVISFNSAIGACAS 418

Query: 561 SGNVEGALQ 569
            G  E ALQ
Sbjct: 419 GGKWEVALQ 427



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 104/256 (40%), Gaps = 44/256 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           PN+    ++I  C   G   ++ A+   LR + +  ++  FNS +   A   K+   L++
Sbjct: 369 PNVVTFNSVIGACKTAGRPEEALAVLGMLRRKGLQPDVISFNSAIGACASGGKWEVALQL 428

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG--VLKLDVFTYSTI 369
            + M   GV  D+ +YNI L AC   G   +A  ++ E   L A G   L+ D++TY+T+
Sbjct: 429 LELMPSEGVTPDLMTYNIALDACVKGGQWEMAMSLFDE---LVASGDESLRPDLYTYNTL 485

Query: 370 VKVFADAKWW-------------------------------------QMALKVKEDMLSA 392
           + VF+DA                                         +ALK+  DM + 
Sbjct: 486 MTVFSDAGMLPRALELLEEAKAKRLRPDVVTYSTLIRACERSMPSQPDVALKLVSDMEAE 545

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           GV PN  T+  +  +   +    + + L   M   G  P++ C   +L+        + A
Sbjct: 546 GVRPNNTTYVGVAISLGRSARPLECLDLLRSMHGKGTPPDAICYLAVLKVLDRWDLAEEA 605

Query: 453 FRLFRSWTLSKTQVAL 468
             LF     +  Q+AL
Sbjct: 606 SLLFEEMVETIEQIAL 621



 Score = 38.9 bits (89), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLK-LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
           A N  +  + Y  ++ L   G+ +  DV T    +   A     + AL +   M S G  
Sbjct: 661 ADNDRMYDQWYRALRLLSTGGLPEETDVKTSRAAIVSAARGGLVEDALAIMRSMESRGFE 720

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
              + + + I A   AG  E+ + +F+EM+ AG EP+  C     + C
Sbjct: 721 LGVVEYGAAIEAFEKAGKPERGLEMFDEMIAAGVEPDVLCYAAATRCC 768


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 32/326 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +P+++    +ID     GD   SR ++  +R   ++ ++  +NSL++       L+    
Sbjct: 227 APSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVAS 286

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M+ +G + D+ +YN L+   C       A E + E+K+      LK +V TYST++
Sbjct: 287 LFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKN----NGLKPNVVTYSTLI 342

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F      Q A+K+  DM   G+ PN  T++SLI+A   AG + +A  L  +MLQAG +
Sbjct: 343 DAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVK 402

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQ---VALGEDYDGNTDRISNMEH 484
            N      LL    +A +   A  +FRS     +S  Q    AL   Y    +R+ +   
Sbjct: 403 LNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYI-KAERMEDAMK 461

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTV 542
             KQ                     + KP    Y  ++   C+       K ++ EM++ 
Sbjct: 462 ILKQM-----------------TECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSR 504

Query: 543 GLSPNHISWTILIDACGGSGNVEGAL 568
           G+S N +  T +IDA   +G    AL
Sbjct: 505 GISANPVISTTIIDAYFKAGKSSDAL 530



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 161/378 (42%), Gaps = 49/378 (12%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K+ DL ++ R +   ++   SP++    ++ID  G  G   +  +++ +++      +I 
Sbjct: 242 KEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDII 301

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +N L+N       +    E +  M+  G+  ++ +Y+ L+ A C  G   + Q     +
Sbjct: 302 TYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEG---MMQGAIKLL 358

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
             +   G+L  + FTY++++     A     A K+  DML AGV  N +T+++L++    
Sbjct: 359 XDMRRTGLLP-NEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCK 417

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVA 467
           AG + +A  +F  ML+ G  PN Q    L+   ++A + + A ++ +  T   +    + 
Sbjct: 418 AGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLIL 477

Query: 468 LGEDYDGNTDRIS------NMEHKDKQSITNTP---NFVPNSHYSSFD-----------K 507
            G    G+  +         +E    + I+  P     + ++++ +             +
Sbjct: 478 YGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQ 537

Query: 508 RFSFKPTTTTYNILMKACC--------TDYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
               + T  TY +L+   C         DY+        M ++GL PN   +T LID   
Sbjct: 538 DVGVEATIVTYCVLIDGLCEAGIVELAVDYF------CRMLSLGLQPNVAVYTSLIDGLC 591

Query: 560 GSGNVEGA------LQCR 571
            +  +E A      +QCR
Sbjct: 592 XNNCIESAKKLFDEMQCR 609



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 103/262 (39%), Gaps = 53/262 (20%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E +  M+    +    S N LL     +GN  L ++ + +   +   G+    VFTY+ +
Sbjct: 181 ECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFND---MIGAGIAP-SVFTYNVM 236

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + + ++   M   G++P+ +T++SLI+     G +E+   LF EM   GC
Sbjct: 237 IDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGC 296

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            P+    N L+      C+F++  R F                                 
Sbjct: 297 VPDIITYNGLINC---YCKFEKMPRAF--------------------------------- 320

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
                       Y S  K    KP   TY+ L+ A C +     A  L+ +MR  GL PN
Sbjct: 321 -----------EYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPN 369

Query: 548 HISWTILIDACGGSGNVEGALQ 569
             ++T LIDA   +GN+  A +
Sbjct: 370 EFTYTSLIDANCKAGNLTEAWK 391



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 136/338 (40%), Gaps = 30/338 (8%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSL 297
           A   +   K +   PN+    T+ID    C + M   AI    D+R   +  N + + SL
Sbjct: 319 AFEYFSEMKNNGLKPNVVTYSTLID--AFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSL 376

Query: 298 MNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++ N  A +L    ++  +M + GV  ++ +Y  LL   C AG  + A+E++  +     
Sbjct: 377 IDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSM----L 432

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           K  +  +   Y+ +V  +  A+  + A+K+ + M    + P+ I + S+I    +   +E
Sbjct: 433 KDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLE 492

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDY 472
           +   + EEM   G   N      ++ A  +A +   A   F+      +  T V      
Sbjct: 493 ETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLI 552

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YY 530
           DG  +            I           Y         +P    Y  L+   C +    
Sbjct: 553 DGLCE----------AGIVELA-----VDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIE 597

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             K L +EM+  G++P+  ++T LID     GN++ AL
Sbjct: 598 SAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEAL 635



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 41/219 (18%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +++ I E+++S+ ++ N  +  ++++    A      L  ++ MQ +GV A + +Y +L+
Sbjct: 493 ETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLI 552

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C AG   LA + +  +  L     L+ +V  Y++++         + A K+ ++M  
Sbjct: 553 DGLCEAGIVELAVDYFCRMLSLG----LQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQC 608

Query: 392 AGVTPNTI-----------------------------------TWSSLINACANAGLVEQ 416
            G+TP+                                      ++SL++  +  G + Q
Sbjct: 609 RGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQ 668

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           A   F EM++ G  P    C  LL+   +  Q D A  L
Sbjct: 669 ARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIEL 707


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 147/354 (41%), Gaps = 66/354 (18%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACC 335
           +YE++   N+  +I  FN ++N+   + K+    +   +M+  GV  ++ +YN ++   C
Sbjct: 204 VYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYC 263

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
           L G    A +I+  +K       LK D +TY++ +      +  + A  V   +L +G+ 
Sbjct: 264 LRGKFEAASKIFKTMKDKN----LKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLV 319

Query: 396 PNTITWSSLINACANAG-----------------------------------LVEQAMHL 420
           PN +T+++LI+ C N G                                    +E+A  +
Sbjct: 320 PNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDM 379

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE-----DYDGN 475
            +EM + G EP+    NI +          +A  LF        +  +       D  G 
Sbjct: 380 IKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGK 439

Query: 476 TDRISNMEHKDKQSITN--TPNFVP-----NSH--YSSFDKRFSF---------KPTTTT 517
            +R+S  E K K+SI     P+ +      + H    + D+ F            P   T
Sbjct: 440 RNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVT 499

Query: 518 YNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +N LM+  C +      K L++EM+  G+ P+HIS+  LI      G+++ AL+
Sbjct: 500 FNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALE 553



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 103/191 (53%), Gaps = 6/191 (3%)

Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMAS 326
           CG+  K+ ++++++  +N+   +  + SL++V    + +    E +K   K G++ D+  
Sbjct: 405 CGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIM 464

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           +N L+   C+ GN   A ++  E+ +  AK V   D  T++T+++ +   +  + A K+ 
Sbjct: 465 FNALIDGHCVNGNIDRAFQLLKEMDN--AKVVP--DEVTFNTLMQGYCRERKVEEAKKLL 520

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           ++M   G+ P+ I++++LI+  +  G ++ A+ +F+EML  G +P     N L+Q   + 
Sbjct: 521 DEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKI 580

Query: 447 CQFDRAFRLFR 457
            + D A  L R
Sbjct: 581 GEADHAEELLR 591



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 41/296 (13%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           +K    VY+ M K+ + + + ++NI++   C  G    A++  G   H+E  GV K +V 
Sbjct: 198 IKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIG---HMEVYGV-KPNVV 253

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY+T++  +     ++ A K+ + M    + P+  T++S I+       +E+A  +  ++
Sbjct: 254 TYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKL 313

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA-------------LGED 471
           L++G  PN+   N L+  C      D+AF  +R   +++  VA             L + 
Sbjct: 314 LESGLVPNAVTYNALIDGCCNKGDLDKAFA-YRDEMMNRGIVASVFTYNLLIHALFLEKR 372

Query: 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSH---------YSSFDKRF--SFKPTTTTYNI 520
            +   D I  M  K  +    T N   N +          S FD+    + +PT  TY  
Sbjct: 373 IEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTS 432

Query: 521 LMKACCTDYYRVKALMNEMR-------TVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L+     D +  +  M+E           G+ P+ I +  LID    +GN++ A Q
Sbjct: 433 LI-----DVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQ 483



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 150/334 (44%), Gaps = 23/334 (6%)

Query: 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLE-----LFDGSGFKLLKNECQRLLDSGEVE 172
           S I +  +E RI+   GVL KL E G+ P       L DG   K    +  +     +  
Sbjct: 292 SFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNK---GDLDKAFAYRDEM 348

Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF-VREF 231
           M  G++  +  + L +  L  E RI +      D+   +R   + P  D++  N  +  +
Sbjct: 349 MNRGIVASVFTYNLLIHALFLEKRIEE----AEDMIKEMREKGVEP--DVVTYNIQINGY 402

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
            +  +   AL  +D   +    P +    ++IDV G      ++   ++    + +  +I
Sbjct: 403 CRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDI 462

Query: 292 YVFNSLMN---VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            +FN+L++   VN  ++    ++ K M    V+ D  ++N L++  C       A+++  
Sbjct: 463 IMFNALIDGHCVNG-NIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLD 521

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E+K    +G+ K D  +Y+T++  ++     + AL+V ++MLS G  P  +T+++LI   
Sbjct: 522 EMKE---RGI-KPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGY 577

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +  G  + A  L  EM   G  P+      +++A
Sbjct: 578 SKIGEADHAEELLREMQSKGITPDDSTYLYVIEA 611



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 49/194 (25%)

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           +MA  V E+M+   +  + +T++ +IN     G  ++A      M   G +PN    N +
Sbjct: 199 KMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTV 258

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
           +       +F+ A ++F++                          KDK            
Sbjct: 259 INGYCLRGKFEAASKIFKTM-------------------------KDK------------ 281

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
                     + KP   TYN  +   C +        ++ ++   GL PN +++  LID 
Sbjct: 282 ----------NLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDG 331

Query: 558 CGGSGNVEGALQCR 571
           C   G+++ A   R
Sbjct: 332 CCNKGDLDKAFAYR 345


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 147/324 (45%), Gaps = 36/324 (11%)

Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFT 308
           L  PN++    +ID     G+ +++RA++  +++   + ++  +NSL++      DL+  
Sbjct: 195 LPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEV 254

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            ++   M+K G  AD+ +YN L+      G    A   +GE+K    +GV+  +V T+ST
Sbjct: 255 EQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKR---QGVVA-NVVTFST 310

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            V  F      Q A+K+   M   G+ PN  T++SL++    AG ++ A+ L +EM+  G
Sbjct: 311 FVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQG 370

Query: 429 CEPNSQCCNILLQA-CVEA--CQFDRAFRLF-----RSWTLSKTQVALGEDYDGNTDRIS 480
             PN     +++   C E    + D    L      ++  L  T +  G   + N++R  
Sbjct: 371 LVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERAL 430

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNE 538
           ++ ++ K                        +   + Y  L+   C D      K+L+++
Sbjct: 431 DLLNQMKNK--------------------GMELDVSLYGTLIWGLCKDQKVDEAKSLLHK 470

Query: 539 MRTVGLSPNHISWTILIDACGGSG 562
           M   GL PN + +T ++DA   +G
Sbjct: 471 MAGCGLRPNTVIYTTIMDALFKAG 494



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 93/436 (21%), Positives = 182/436 (41%), Gaps = 39/436 (8%)

Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF 224
           L D G ++  V  +  + + R+P         +++L  N+    L  R   ++P  ++  
Sbjct: 144 LADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQG-GLVRRLFDLLPVPNVFT 202

Query: 225 CNFVREF-GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
            N V +F  K+ +LV A   +   K    SP++    ++ID  G CGD  +   +  ++R
Sbjct: 203 FNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMR 262

Query: 284 SQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
                 ++  +N+L+N  +    ++     +  M++ GV+A++ +++  + A C  G   
Sbjct: 263 KSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEG--- 319

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
           L QE       +  +G++  + FTY+++V     A     A+ + ++M+  G+ PN +T+
Sbjct: 320 LVQEAMKLFAQMRVRGMMP-NEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTY 378

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           + +++     G V +A ++   M + G + N      L+         +RA  L      
Sbjct: 379 TVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKN 438

Query: 462 SKTQVAL--------GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF---- 509
              ++ +        G   D   D   ++ HK        PN V   + +  D  F    
Sbjct: 439 KGMELDVSLYGTLIWGLCKDQKVDEAKSLLHK-MAGCGLRPNTV--IYTTIMDALFKAGK 495

Query: 510 --------------SFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTI 553
                          F+P   TY  L+   C      +A+   N+MR +GL PN  ++T 
Sbjct: 496 ESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTA 555

Query: 554 LIDACGGSGNVEGALQ 569
           LID     G++  A+ 
Sbjct: 556 LIDGFCKIGSLNKAMH 571



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 33/204 (16%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN  I  TI+D     G   ++ A+   +       N+  + +L++    A  +   +  
Sbjct: 478 PNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISH 537

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGN--------------------TVLAQEIYGEVK 351
           +  M++LG+  ++ +Y  L+   C  G+                     V    I G +K
Sbjct: 538 FNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMK 597

Query: 352 H--------LEAKGV---LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
                    L+ K +   L+LD++ Y+  +  F +    Q A  V  +M+  G+TP+   
Sbjct: 598 QANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTV 657

Query: 401 WSSLINACANAGLVEQAMHLFEEM 424
           ++ LI      G +E+A  L  EM
Sbjct: 658 YNCLIRKYQKLGNMEEASSLQNEM 681


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 123/269 (45%), Gaps = 21/269 (7%)

Query: 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVS----------------ALRAYDASKKH 250
           +N  ++   + P   +   + VR  G + D ++                A++ ++  + H
Sbjct: 267 INARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAH 326

Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFT 308
              P+++    +I V G CG   ++  ++ +L  +    +   +NSL+   A +   +  
Sbjct: 327 RCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKV 386

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            EVY+ MQK+G   D  +YN ++      G   LA ++Y ++K L  +     D  TY+ 
Sbjct: 387 KEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNP---DAITYTV 443

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++     A     A  +  +ML  G+ P   T+S+LI   A AG  E+A   F  ML++G
Sbjct: 444 LIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSG 503

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +P++   +++L   +   +  +A+ L+R
Sbjct: 504 TKPDNLAYSVMLDVLLRGNETRKAWGLYR 532



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 154/353 (43%), Gaps = 28/353 (7%)

Query: 224 FCNFVREFGKKRDLVSALRAYD-ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +C  V+  G++     AL  ++  + +H  SPN    R +  + G+ G + +     E  
Sbjct: 159 YCFVVKSVGQE-SWQRALEVFEWLNLRHWHSPN---ARMVAAILGVLGRWNQESLAVEIF 214

Query: 283 RSQNVTLN--IYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAG 338
                T+   + V+N++M V +   KF+   E+   M++ G + D+ S+N L+ A   +G
Sbjct: 215 TRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSG 274

Query: 339 NTV--LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
                LA E+   V++      L+ D  TY+T++   +       A+KV EDM +    P
Sbjct: 275 GLTPNLAVELLDMVRN----SGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQP 330

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +  T++++I+     GL  +A  LF E+   G  P++   N LL A       ++   ++
Sbjct: 331 DLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVY 390

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
           +       ++  G+D +   + I +M  K  Q        +    Y          P   
Sbjct: 391 QQ----MQKMGFGKD-EMTYNTIIHMYGKQGQLD------LALQLYKDMKGLSGRNPDAI 439

Query: 517 TYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           TY +L+ +       V+A  LM+EM  VG+ P   +++ LI     +G  E A
Sbjct: 440 TYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEA 492



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 117/254 (46%), Gaps = 14/254 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-DLKFTLE-V 311
           P+     T++  C    +   +  ++ED+ +     +++ +N++++V     L    E +
Sbjct: 295 PDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERL 354

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  ++  G   D  +YN LL A     NT   +E+Y +++ +   G  K D  TY+TI+ 
Sbjct: 355 FMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM---GFGK-DEMTYNTIIH 410

Query: 372 VFADAKWWQMALKVKEDMLS-AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           ++       +AL++ +DM   +G  P+ IT++ LI++   A    +A  L  EML  G +
Sbjct: 411 MYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIK 470

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ-------VALGEDYDGNTDRISNME 483
           P  Q  + L+    +A + + A   F     S T+       V L     GN  R +   
Sbjct: 471 PTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGL 530

Query: 484 HKDKQSITNTPNFV 497
           ++D  S  +TP++ 
Sbjct: 531 YRDMISDGHTPSYT 544



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+ I++ +   K WQ A  V  ++  +G TP+  TW+SL++A A  G  E+A  +F  M+
Sbjct: 755 YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814

Query: 426 QAGCEPNSQCCNILLQA-CVEA 446
           + G  P  +  NILL A CV+ 
Sbjct: 815 RDGPSPTVESINILLHALCVDG 836



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/398 (18%), Positives = 160/398 (40%), Gaps = 60/398 (15%)

Query: 223  LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
            ++ + +  +GK++    A       ++   +P++    +++     CG Y ++RAI+  +
Sbjct: 754  MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTM 813

Query: 283  RSQNVTLNIYVFNSLMNVNAHDLKFTLEVY---KNMQKLGVMADMASYNILLKACCLAGN 339
                 +  +   N L++    D +   E+Y   + +Q +G     +S  ++L A   AGN
Sbjct: 814  MRDGPSPTVESINILLHALCVDGRLE-ELYVVVEELQDMGFKISKSSILLMLDAFARAGN 872

Query: 340  TVLAQEIYGEVK---------------HLEAKGV----------------LKLDVFTYST 368
                ++IY  +K                L  KG                  K+++  +++
Sbjct: 873  IFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNS 932

Query: 369  IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            ++K++   + ++  ++V + +   G+ P+  T+++LI         E+   L ++M   G
Sbjct: 933  MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLG 992

Query: 429  CEPNSQCCNILL-----QACVEACQ------FDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
             +P       L+     Q C+E  +        +  +L RS+  +  +++     D   +
Sbjct: 993  LDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052

Query: 478  R-ISNMEHKDKQSITNTPNFVPNSHYSSFD-----------KRFSFKPTTTTYNILMKAC 525
            + +  M++   +    T + +  S+ SS +           K    + TT  Y+ ++ A 
Sbjct: 1053 KLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAY 1112

Query: 526  --CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561
                DY      + EM+  GL P+H  WT  + A   S
Sbjct: 1113 LRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFS 1150


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 152/345 (44%), Gaps = 49/345 (14%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           +PN+    T+ID  G+C + M   A  ++E+++ +N+  +I  + SL++     H L+  
Sbjct: 340 TPNVRTYTTMID--GLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERA 397

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           + + K M++ G+  D+ SY ILL A C  G    A+E +   + L  KG   L+V TY+ 
Sbjct: 398 IALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFF---QRLLVKGY-HLNVQTYNV 453

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++     A  +  A+ +K  M   G  P+ IT+ ++I A       ++A  +  EM+  G
Sbjct: 454 MINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARG 513

Query: 429 CEPNSQC----CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG----NTDRIS 480
            +   +       I+L    +AC             +    V  G   DG    N  + +
Sbjct: 514 LQEARKVRLKEAKIVLAVMTKAC-------------IKPDVVTYGTLMDGYFLVNELKHA 560

Query: 481 NMEHKDKQSITNTPNF--------------VPNSHYSSFD--KRFSFKPTTTTYNILMKA 524
                    +  TPN                 +   S F+  K  +  P   TY  L+ A
Sbjct: 561 KYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDA 620

Query: 525 CCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            C +++  R  AL+ EM+  G+ P+  S+TIL+D    SG +EGA
Sbjct: 621 LCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGA 665



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 133/314 (42%), Gaps = 59/314 (18%)

Query: 260 RTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNM 315
           RT+I+  G+C  G+      +   L   +V  ++ ++N++++    +  L    ++Y  M
Sbjct: 172 RTLIN--GLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEM 229

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
              G+  ++ +YN L+   C+ G+    +E +  +  ++ K +   DV T++T++     
Sbjct: 230 IVKGISPNVVTYNALVYGFCIMGHL---KEAFSLLNEMKLKNI-NPDVCTFNTLIDALGK 285

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
               + A  V   M+ A + P+ +T++SLI+       V+ A ++F  M Q+G  PN + 
Sbjct: 286 EGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRT 345

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
              ++    +    D A  LF                         M++K         N
Sbjct: 346 YTTMIDGLCKEKMVDEAMSLFEE-----------------------MKYK---------N 373

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTI 553
            +P+                 TY  L+   C +++  R  AL  +M+  G+ P+  S+TI
Sbjct: 374 MIPD---------------IVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTI 418

Query: 554 LIDACGGSGNVEGA 567
           L+DA    G +E A
Sbjct: 419 LLDALCKGGRLENA 432



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 104/229 (45%), Gaps = 15/229 (6%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTL 289
           G+ + +   LR  +    H   P++ +  TII    +C + +   A  +Y ++  + ++ 
Sbjct: 182 GETKAVARLLRKLEG---HSVKPDVVMYNTIIH--SLCKNKLLGDACDLYSEMIVKGISP 236

Query: 290 NIYVFNSLMN---VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           N+  +N+L+    +  H LK    +   M+   +  D+ ++N L+ A    G    A+ +
Sbjct: 237 NVVTYNALVYGFCIMGH-LKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIV 295

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
                 +  K  +K DV TY++++  +      + A  V   M  +GVTPN  T++++I+
Sbjct: 296 LA----VMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMID 351

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
                 +V++AM LFEEM      P+      L+    +    +RA  L
Sbjct: 352 GLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIAL 400



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 110/269 (40%), Gaps = 24/269 (8%)

Query: 211 IRYACIVPRADIL-FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269
           ++Y  ++P  DI+ + + +    K   L  A+      K+    P++Y    ++D     
Sbjct: 369 MKYKNMIP--DIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKG 426

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G    ++  ++ L  +   LN+  +N ++N    A      +++   M+  G M D  ++
Sbjct: 427 GRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITF 486

Query: 328 NILLKACCLAGNTVLAQEIYGE-----------VKHLEAKGVL--------KLDVFTYST 368
             ++ A         A++I  E           V+  EAK VL        K DV TY T
Sbjct: 487 KTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGT 546

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  +      + A  V   M   GVTPN   ++ +I+       V++AM LFEEM    
Sbjct: 547 LMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKN 606

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
             PN      L+ A  +    +RA  L +
Sbjct: 607 MFPNIVTYTSLIDALCKNHHLERAIALLK 635



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 98/207 (47%), Gaps = 6/207 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
           SPN+     ++    I G   ++ ++  +++ +N+  ++  FN+L++    +  +K    
Sbjct: 235 SPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKI 294

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V   M K  +  D+ +YN L+           A+ ++  +    A+  +  +V TY+T++
Sbjct: 295 VLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSM----AQSGVTPNVRTYTTMI 350

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 K    A+ + E+M    + P+ +T++SLI+       +E+A+ L ++M + G +
Sbjct: 351 DGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQ 410

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFR 457
           P+     ILL A  +  + + A   F+
Sbjct: 411 PDVYSYTILLDALCKGGRLENAKEFFQ 437



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 122/319 (38%), Gaps = 31/319 (9%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           ++++   S   T ++   N LMN   H   + F   V  N+ K G   +  + N L+K  
Sbjct: 84  SLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGL 143

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C  G    A   + +V    A+G  +L+  +Y T++         +   ++   +    V
Sbjct: 144 CFRGEIKKALYFHDQV---VAQG-FQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSV 199

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+ + ++++I++     L+  A  L+ EM+  G  PN    N L+           AF 
Sbjct: 200 KPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFS 259

Query: 455 LFRSWTLSKTQV----------ALGEDYDGNTDRI---SNMEHKDKQSITNTP------- 494
           L     L               ALG++      +I     M+   K  +           
Sbjct: 260 LLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYF 319

Query: 495 --NFVPNSHYSSFDKRFS-FKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHI 549
             N V N+ Y  +    S   P   TY  ++   C +       +L  EM+   + P+ +
Sbjct: 320 FLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIV 379

Query: 550 SWTILIDACGGSGNVEGAL 568
           ++T LID    + ++E A+
Sbjct: 380 TYTSLIDGLCKNHHLERAI 398



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/205 (19%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++    T++D   +  +   ++ ++  +    VT N+  +  +++       +   + +
Sbjct: 539 PDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSL 598

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M+   +  ++ +Y  L+ A C   N  L + I   +K ++  G+ + DV++Y+ ++ 
Sbjct: 599 FEEMKHKNMFPNIVTYTSLIDALC--KNHHLERAI-ALLKEMKEHGI-QPDVYSYTILLD 654

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               +   + A ++ + +L  G   N   ++++IN    AGL ++A+ L  +M   GC P
Sbjct: 655 GLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMP 714

Query: 432 NSQCCNILLQACVEACQFDRAFRLF 456
           ++   +I++ A  E  + D+A ++ 
Sbjct: 715 DAVTFDIIIWALFEKDENDKAEKIL 739



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 4/143 (2%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M K  +  D+ +Y  L+    L      A+ ++  +  +   GV   +V  Y+ ++    
Sbjct: 532 MTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQM---GVTP-NVQCYTIMIDGLC 587

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
             K    A+ + E+M    + PN +T++SLI+A      +E+A+ L +EM + G +P+  
Sbjct: 588 KKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVY 647

Query: 435 CCNILLQACVEACQFDRAFRLFR 457
              ILL    ++ + + A  +F+
Sbjct: 648 SYTILLDGLCKSGRLEGAKEIFQ 670


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 142/320 (44%), Gaps = 22/320 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++     ++D     GD   + A+ + + S+ +   I  +NS++     +       EV
Sbjct: 189 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 248

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +K M   GV  D+ S+ IL+   C  G    A +IY E++H   +G+ K D+ ++S ++ 
Sbjct: 249 FKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRH---RGI-KPDLVSFSCLIG 304

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +FA       A+    +M   G+ P+ + ++ +I     AGL+  A+ + +EM+  GC P
Sbjct: 305 LFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLP 364

Query: 432 NSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           +    N LL   C E        RL  +  L       G   D  T   + + H     I
Sbjct: 365 DVVTYNTLLNGLCKER-------RLLDAEGLLNEMRERGVPPDLCT--FTTLIH--GYCI 413

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNH 548
               +       +  ++R   +P   TYN L+   C   D  +   L ++M +  + PNH
Sbjct: 414 EGKLDKALQLFDTMLNQR--LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNH 471

Query: 549 ISWTILIDACGGSGNVEGAL 568
           ++++ILID+    G VE A 
Sbjct: 472 VTYSILIDSHCEKGQVEDAF 491



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 18/247 (7%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMK 274
           VP     F   +  +  +  L  AL+ +D        P++    T+ID  G+C  GD  K
Sbjct: 397 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID--GMCRQGDLDK 454

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE----VYKNMQKLGVMADMASYNIL 330
           +  +++D+ S+ +  N   ++ L  +++H  K  +E        M   G++ ++ +YN +
Sbjct: 455 ANDLWDDMHSREIFPNHVTYSIL--IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSI 512

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKED 388
           +K  C +GN    Q      K L+   V K+  D+ TY+T++  +        A K+   
Sbjct: 513 IKGYCRSGNVSKGQ------KFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNM 566

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M    V P+ +T++ LIN  +  G V++A  +FE+M   G EP+      ++   V A  
Sbjct: 567 MEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGN 626

Query: 449 FDRAFRL 455
              AF+L
Sbjct: 627 SKEAFQL 633



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 128/298 (42%), Gaps = 26/298 (8%)

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCL 336
           Y  + S N  +N Y  N +++     L+F     V   M+K  V  D+ ++N+++ A   
Sbjct: 144 YRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFR 203

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           AG+   A  +   V  + +KG LK  + TY++++K    +  W  A +V ++M   GV P
Sbjct: 204 AGDAEAAMAL---VDSMVSKG-LKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAP 259

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA---F 453
           +  +++ LI      G +E+A+ +++EM   G +P+    + L+       + D A    
Sbjct: 260 DVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYL 319

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
           R  R + L    V       G            +  + +    V +             P
Sbjct: 320 REMRCFGLVPDGVIYTMVIGGFC----------RAGLMSDALRVRDEMVGC-----GCLP 364

Query: 514 TTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              TYN L+   C +   + A  L+NEMR  G+ P+  ++T LI      G ++ ALQ
Sbjct: 365 DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQ 422



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 154/353 (43%), Gaps = 29/353 (8%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           R G  D    V K++++ GVAP    D   F +L     R+   GE+E     +++ +E 
Sbjct: 238 RSGMWDKAWEVFKEMDDFGVAP----DVRSFTILIGGFCRV---GEIE---EALKIYKEM 287

Query: 185 R-LPVKELDEEFR-IVQLCVNKPDVNLAIRYA------CIVPRADILFCNFVREFGKKRD 236
           R   +K     F  ++ L   +  ++ A+ Y        +VP   +++   +  F +   
Sbjct: 288 RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDG-VIYTMVIGGFCRAGL 346

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YMKSRAIYEDLRSQNVTLNIYVF 294
           +  ALR  D        P++    T+++  G+C +   + +  +  ++R + V  ++  F
Sbjct: 347 MSDALRVRDEMVGCGCLPDVVTYNTLLN--GLCKERRLLDAEGLLNEMRERGVPPDLCTF 404

Query: 295 NSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
            +L++    + K    L+++  M    +  D+ +YN L+   C  G+   A +++ ++  
Sbjct: 405 TTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHS 464

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
            E    +  +  TYS ++    +    + A    ++M++ G+ PN +T++S+I     +G
Sbjct: 465 RE----IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSG 520

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
            V +     ++M+     P+    N L+   ++  +   AF+L       K Q
Sbjct: 521 NVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQ 573


>gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa]
 gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 128/321 (39%), Gaps = 57/321 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTL 309
           PN++    +ID C   G   K+   Y  +RS+NV  +  VFN+L+       A D  F +
Sbjct: 110 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 169

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
                 +   +  D  +   L+KAC  AG    AQE+Y  V     KG  ++    Y+  
Sbjct: 170 LAEMTGEAQPIDPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEV----YTIA 225

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +   +    W+ A KV +DM   GV P+ +  S+LI+   +AG ++ A  + +E    G 
Sbjct: 226 INSCSQIGDWEFACKVFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGA 285

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +      + L+ AC  A  + +   L+             ED                  
Sbjct: 286 QLGIIPYSSLMGACCNAKNWQKGLELY-------------EDI----------------- 315

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPN 547
                            K    KPT  T N L+ A C      KAL  ++EM+  GL PN
Sbjct: 316 -----------------KSMKIKPTVATMNALITALCDGDQLPKALEVLSEMKAWGLRPN 358

Query: 548 HISWTILIDACGGSGNVEGAL 568
            I+++IL  A     ++E  L
Sbjct: 359 TITYSILSVASERKDDLEAGL 379



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 16/248 (6%)

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           ++++N+L+  C  + N+  A E+    K +     LK D   Y+T++   A +       
Sbjct: 42  LSTFNMLMSVCATSQNSAGAFEVLQLAKAVG----LKADCKLYTTLISTCAKSGKVDAMF 97

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           +V  +M++AGV PN  T+ +LI+ CA AG V +A   +  M     +P+    N L+ AC
Sbjct: 98  EVFHEMVNAGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 157

Query: 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
            ++   DRAF +    T        GE    + D I+       ++ TN           
Sbjct: 158 GQSGAVDRAFDVLAEMT--------GEAQPIDPDHIT--VGALIKACTNAGQVDRAQEVY 207

Query: 504 SFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561
           +   +++ K T   Y I + +C    D+     + ++M   G+ P+ +  + LID  G +
Sbjct: 208 NMVHKYNIKGTPEVYTIAINSCSQIGDWEFACKVFDDMTRKGVVPDEMFLSALIDVAGHA 267

Query: 562 GNVEGALQ 569
           G ++ A +
Sbjct: 268 GKMDAAFE 275



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 92/213 (43%), Gaps = 12/213 (5%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
            +P +Y     I+ C   GD+  +  +++D+  + V  +    ++L++V  H  K     
Sbjct: 217 GTPEVYT--IAINSCSQIGDWEFACKVFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAF 274

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+ +  +  G    +  Y+ L+ ACC A N     E+Y ++K ++    +K  V T + +
Sbjct: 275 EIIQEAKAKGAQLGIIPYSSLMGACCNAKNWQKGLELYEDIKSMK----IKPTVATMNAL 330

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +    D      AL+V  +M + G+ PNTIT+S L  A      +E  + L  +  +   
Sbjct: 331 ITALCDGDQLPKALEVLSEMKAWGLRPNTITYSILSVASERKDDLEAGLMLLSQAKKDCV 390

Query: 430 EPNSQCCNILLQACVE----ACQFDRAFRLFRS 458
            P       ++  C+     AC    A   F S
Sbjct: 391 APTLIMSKCIISMCLRKFESACTLGEAVLSFNS 423


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 158/352 (44%), Gaps = 27/352 (7%)

Query: 221 DILFCNFVREFGKKRDLVSALRAY-DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           D  + + +  + KK  +V A R   DA  K         C  +   C   GD  ++ A++
Sbjct: 400 DFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQD-GDPDQAMAVF 458

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           +D   + +  +I V+N+L+        +   L++   M + G   D+ +YN+++   C  
Sbjct: 459 KDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKM 518

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A  + G+      KG +  D+FTY+T+V  +        A+++   M S G+TP+
Sbjct: 519 GCLSDANHLIGDAI---TKGCIP-DIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPD 574

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF- 456
            IT+++L+N        E+ M +F+ M + GC PN    N ++++   + + + A  L  
Sbjct: 575 VITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLG 634

Query: 457 --RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
             +S  L+   V+ G    G   ++ +++                  +   +K++    T
Sbjct: 635 EMKSKGLTPDVVSFGTLITGFC-KVGDLDG-------------AYGLFRGMEKQYDVSHT 680

Query: 515 TTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           T TYNI++ A         A  L +EM+  G  P++ ++ +LID    +GNV
Sbjct: 681 TATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNV 732



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 130/327 (39%), Gaps = 31/327 (9%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASY 327
           G   ++   +E +   N   ++Y +N++MN+      F    +VY  M+   V +D+ +Y
Sbjct: 169 GKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTY 228

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            I +K+ C  G    A  +   ++++   G    +   Y T+V  F +      A ++ +
Sbjct: 229 TIRIKSFCRTGRPYAALRL---LRNMPVLGCFS-NAVAYCTVVTGFYEFGDNDRARELFD 284

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +ML   + P+  T++ L++A    G V ++  LF+++L+ G  PN    NI +Q   +  
Sbjct: 285 EMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEG 344

Query: 448 QFDRAFRL--------FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
             DRA RL         R   ++   V  G              HK         +F  N
Sbjct: 345 SLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYN 404

Query: 500 SHYSSFDKRF---------------SFKPTTTTYNILMKACCTDY--YRVKALMNEMRTV 542
           S    + K+                 FKP   TY  L+   C D    +  A+  +    
Sbjct: 405 SIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGK 464

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
           GL P+ I +  LI      G +  ALQ
Sbjct: 465 GLRPSIIVYNTLIKGLCQQGLILPALQ 491



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/275 (19%), Positives = 116/275 (42%), Gaps = 46/275 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           I++   ++   ++  ++ AL+  +   +    P+++    II+  G+C  G    +  + 
Sbjct: 471 IVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIIN--GLCKMGCLSDANHLI 528

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLA 337
            D  ++    +I+ +N+L++     LK    +E+   M   G+  D+ +YN LL   C  
Sbjct: 529 GDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKT 588

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
             +    EI+   K +  KG    ++ TY+TI++   ++K    A+ +  +M S G+TP+
Sbjct: 589 AKSEEVMEIF---KAMTEKGCAP-NIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPD 644

Query: 398 TITWSSLINACANAG-------------------------------LVEQ-----AMHLF 421
            +++ +LI      G                                 EQ     A+ LF
Sbjct: 645 VVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLF 704

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            EM + GC+P++    +L+    +    ++ ++  
Sbjct: 705 SEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFL 739



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/379 (19%), Positives = 144/379 (37%), Gaps = 41/379 (10%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  V  F +  D   A   +D   +    P++     ++      G  ++S  +++ 
Sbjct: 261 VAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDK 320

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + V  N++ FN  +        L   + +   + + G+  D+ +YN ++   C    
Sbjct: 321 VLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSR 380

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            V A+E      H    G  + + FTY++I+  +        A ++ +D +  G  P+  
Sbjct: 381 VVEAEECL----HKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEF 436

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS- 458
           T+ SL+N     G  +QAM +F++ L  G  P+    N L++   +      A +L    
Sbjct: 437 TYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEM 496

Query: 459 ---------WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN--TPN-FVPNSHYSSFD 506
                    WT +     L +        +S+  H    +IT    P+ F  N+    + 
Sbjct: 497 AEKGCKPDIWTYNLIINGLCK-----MGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYC 551

Query: 507 KRFSFK---------------PTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHI 549
           ++                   P   TYN L+   C       V  +   M   G +PN I
Sbjct: 552 RQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNII 611

Query: 550 SWTILIDACGGSGNVEGAL 568
           ++  +I++   S  V  A+
Sbjct: 612 TYNTIIESLCNSKKVNEAV 630



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 13/228 (5%)

Query: 210 AIRYACIVPRADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268
           AI   CI    DI   N  V  + ++  L SA+   +       +P++    T+++  G+
Sbjct: 531 AITKGCI---PDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLN--GL 585

Query: 269 CGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADM 324
           C          I++ +  +    NI  +N+++    N+  +   +++   M+  G+  D+
Sbjct: 586 CKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDV 645

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            S+  L+   C  G+   A   YG  + +E +  +     TY+ I+  F++    +MAL+
Sbjct: 646 VSFGTLITGFCKVGDLDGA---YGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALR 702

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +  +M   G  P+  T+  LI+     G V Q      E ++ G  P+
Sbjct: 703 LFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPS 750



 Score = 39.7 bits (91), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 120/335 (35%), Gaps = 58/335 (17%)

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM-QKLGVMADMASYNILLKA---- 333
           YED+  +N+         L+       K TL  YK+M QKLG          LL      
Sbjct: 97  YEDVCIRNL--------QLIKKTKQGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSN 148

Query: 334 ---CCLAGNTVLAQEIYGE-------VKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQM 381
                L G  V A   YG        V   E   +   D  V++Y+ I+ +  +  ++  
Sbjct: 149 LDNTLLEGVYVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQ 208

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A KV   M    V  +  T++  I +    G    A+ L   M   GC  N+     ++ 
Sbjct: 209 AHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVT 268

Query: 442 ACVEACQFDRAFRLFRSW----------TLSKTQVAL-GEDYDGNTDRISNMEHKDKQSI 490
              E    DRA  LF             T +K   AL  + +   ++R+   +   K+ +
Sbjct: 269 GFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERL--FDKVLKRGV 326

Query: 491 TNTPNFVPNSHY-------SSFDK---------RFSFKPTTTTYNILMKACCTDYYRVKA 534
              PN    + +        S D+         R   +P   TYN ++   C     V+A
Sbjct: 327 --CPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEA 384

Query: 535 --LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              +++M   G  PN  ++  +ID     G V  A
Sbjct: 385 EECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDA 419


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 123/269 (45%), Gaps = 21/269 (7%)

Query: 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVS----------------ALRAYDASKKH 250
           +N  ++   + P   +   + VR  G + D ++                A++ ++  + H
Sbjct: 267 INARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAH 326

Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFT 308
              P+++    +I V G CG   ++  ++ +L  +    +   +NSL+   A +   +  
Sbjct: 327 RCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKV 386

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            EVY+ MQK+G   D  +YN ++      G   LA ++Y ++K L  +     D  TY+ 
Sbjct: 387 KEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNP---DAITYTV 443

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++     A     A  +  +ML  G+ P   T+S+LI   A AG  E+A   F  ML++G
Sbjct: 444 LIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSG 503

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +P++   +++L   +   +  +A+ L+R
Sbjct: 504 TKPDNLAYSVMLDVLLRGNETRKAWGLYR 532



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 154/353 (43%), Gaps = 28/353 (7%)

Query: 224 FCNFVREFGKKRDLVSALRAYD-ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +C  V+  G++     AL  ++  + +H  SPN    R +  + G+ G + +     E  
Sbjct: 159 YCFVVKSVGQE-SWQRALEVFEWLNLRHWHSPN---ARMVAAILGVLGRWNQESLAVEIF 214

Query: 283 RSQNVTLN--IYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAG 338
                T+   + V+N++M V +   KF+   E+   M++ G + D+ S+N L+ A   +G
Sbjct: 215 TRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSG 274

Query: 339 NTV--LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
                LA E+   V++      L+ D  TY+T++   +       A+KV EDM +    P
Sbjct: 275 GLTPNLAVELLDMVRN----SGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQP 330

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +  T++++I+     GL  +A  LF E+   G  P++   N LL A       ++   ++
Sbjct: 331 DLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVY 390

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
           +       ++  G+D +   + I +M  K  Q        +    Y          P   
Sbjct: 391 QQ----MQKMGFGKD-EMTYNTIIHMYGKQGQLD------LALQLYKDMKGLSGRNPDAI 439

Query: 517 TYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           TY +L+ +       V+A  LM+EM  VG+ P   +++ LI     +G  E A
Sbjct: 440 TYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEA 492



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 117/254 (46%), Gaps = 14/254 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-DLKFTLE-V 311
           P+     T++  C    +   +  ++ED+ +     +++ +N++++V     L    E +
Sbjct: 295 PDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERL 354

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  ++  G   D  +YN LL A     NT   +E+Y +++ +   G  K D  TY+TI+ 
Sbjct: 355 FMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM---GFGK-DEMTYNTIIH 410

Query: 372 VFADAKWWQMALKVKEDMLS-AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           ++       +AL++ +DM   +G  P+ IT++ LI++   A    +A  L  EML  G +
Sbjct: 411 MYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIK 470

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ-------VALGEDYDGNTDRISNME 483
           P  Q  + L+    +A + + A   F     S T+       V L     GN  R +   
Sbjct: 471 PTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGL 530

Query: 484 HKDKQSITNTPNFV 497
           ++D  S  +TP++ 
Sbjct: 531 YRDMISDGHTPSYT 544



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+ I++ +   K WQ A  V  ++  +G TP+  TW+SL++A A  G  E+A  +F  M+
Sbjct: 755 YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814

Query: 426 QAGCEPNSQCCNILLQA-CVEA 446
           + G  P  +  NILL A CV+ 
Sbjct: 815 RDGPSPTVESINILLHALCVDG 836



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/398 (18%), Positives = 160/398 (40%), Gaps = 60/398 (15%)

Query: 223  LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
            ++ + +  +GK++    A       ++   +P++    +++     CG Y ++RAI+  +
Sbjct: 754  MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTM 813

Query: 283  RSQNVTLNIYVFNSLMNVNAHDLKFTLEVY---KNMQKLGVMADMASYNILLKACCLAGN 339
                 +  +   N L++    D +   E+Y   + +Q +G     +S  ++L A   AGN
Sbjct: 814  MRDGPSPTVESINILLHALCVDGRLE-ELYVVVEELQDMGFKISKSSILLMLDAFARAGN 872

Query: 340  TVLAQEIYGEVK---------------HLEAKGV----------------LKLDVFTYST 368
                ++IY  +K                L  KG                  K+++  +++
Sbjct: 873  IFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNS 932

Query: 369  IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            ++K++   + ++  ++V + +   G+ P+  T+++LI         E+   L ++M   G
Sbjct: 933  MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLG 992

Query: 429  CEPNSQCCNILL-----QACVEACQ------FDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
             +P       L+     Q C+E  +        +  +L RS+  +  +++     D   +
Sbjct: 993  LDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052

Query: 478  R-ISNMEHKDKQSITNTPNFVPNSHYSSFD-----------KRFSFKPTTTTYNILMKAC 525
            + +  M++   +    T + +  S+ SS +           K    + TT  Y+ ++ A 
Sbjct: 1053 KLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAY 1112

Query: 526  --CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561
                DY      + EM+  GL P+H  WT  + A   S
Sbjct: 1113 LRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFS 1150


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 136/323 (42%), Gaps = 22/323 (6%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           + P ++    +ID     GD   +R ++E+++ + +  +   +NS+++       L  T+
Sbjct: 258 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
             ++ M+ +    D+ +YN L+   C  G   +  E Y E+K     G LK +V +YST+
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK---GNG-LKPNVVSYSTL 373

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           V  F      Q A+K   DM   G+ PN  T++SLI+A    G +  A  L  EMLQ G 
Sbjct: 374 VDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGV 433

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ- 488
           E N      L+    +A +   A  LF     +     L   Y+         ++ D+  
Sbjct: 434 EWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLAS-YNALIHGFVKAKNMDRAL 492

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
            + N              K    KP    Y   +   C+       K +MNEM+  G+  
Sbjct: 493 ELLNEL------------KGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKA 540

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
           N + +T L+DA   SGN    L 
Sbjct: 541 NSLIYTTLMDAYFKSGNPTEGLH 563



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 75/353 (21%), Positives = 140/353 (39%), Gaps = 56/353 (15%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   V  F K+  +  A++ Y   ++    PN Y   ++ID     G+   +  +  ++ 
Sbjct: 370 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEML 429

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              V  N+  + +L++   +A  +K   E++  M   GV+ ++ASYN L+     A N  
Sbjct: 430 QVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMD 489

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A E+  E+K    +G+ K D+  Y T +      +  + A  V  +M   G+  N++ +
Sbjct: 490 RALELLNELK---GRGI-KPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIY 545

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           ++L++A   +G   + +HL +EM +   E       +L+    +     +A   F     
Sbjct: 546 TTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYF----- 600

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
                          +RISN                           F  +     +  +
Sbjct: 601 ---------------NRISN--------------------------DFGLQANAAIFTAM 619

Query: 522 MKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           +   C D  +V+A   L  +M   GL P+  ++T L+D     GNV  AL  R
Sbjct: 620 IDGLCKD-NQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALR 671



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 110/224 (49%), Gaps = 7/224 (3%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +++  +VP   + + + +  FGK   L   +  ++  K     P++     +I+     G
Sbjct: 288 MKFRGLVPDT-VTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFG 346

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYN 328
                   Y +++   +  N+  +++L++    +  ++  ++ Y +M+++G++ +  +Y 
Sbjct: 347 KLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYT 406

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            L+ A C  GN   A  +  E+  +   GV + +V TY+ ++    DA+  + A ++   
Sbjct: 407 SLIDANCKIGNLSDAFRLGNEMLQV---GV-EWNVVTYTALIDGLCDAERMKEAEELFGK 462

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           M +AGV PN  ++++LI+    A  +++A+ L  E+   G +P+
Sbjct: 463 MDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 506



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 29/202 (14%)

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P    + +L +   + G++E+A+  F +M +    P ++ CN LL    +  + D   R
Sbjct: 189 VPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKR 248

Query: 455 LFRS----------WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
            F+           +T +     + ++ D    R    E K +  + +T  +  NS    
Sbjct: 249 FFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTY--NSMIDG 306

Query: 505 FDKRFSFKPTTTTYNILMKACC-TDYYRVKALMN----------------EMRTVGLSPN 547
           F K      T   +  +   CC  D     AL+N                EM+  GL PN
Sbjct: 307 FGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPN 366

Query: 548 HISWTILIDACGGSGNVEGALQ 569
            +S++ L+DA    G ++ A++
Sbjct: 367 VVSYSTLVDAFCKEGMMQQAIK 388



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 81/169 (47%), Gaps = 13/169 (7%)

Query: 261 TIIDVC----GICGDYMKSRAI-YEDLRSQNVTL--NIYVFNSLMNVNAHD--LKFTLEV 311
           T++  C    G+C + + S+A+ Y +  S +  L  N  +F ++++    D  ++    +
Sbjct: 576 TVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTL 635

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M + G++ D  +Y  L+      GN + A  +  ++  +     +KLD+  Y+++V 
Sbjct: 636 FEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIG----MKLDLLAYTSLVW 691

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
             +     Q A    E+M+  G+ P+ +   S++      G +++A+ L
Sbjct: 692 GLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 740


>gi|168023641|ref|XP_001764346.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684498|gb|EDQ70900.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 978

 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 166/401 (41%), Gaps = 66/401 (16%)

Query: 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP----RADILF 224
           G VE      +++ EF      L     ++ +C +  D++ A+R   ++     +AD +F
Sbjct: 277 GSVEDAFAFAKLMREF----STLQHYTMLLSVCCHAKDIDGALRVLALLESRGLKADCMF 332

Query: 225 -CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
             + +    K   +    + +   +      N++    +ID C   G   K+   Y  + 
Sbjct: 333 YTSLISACAKAGKVDLLFQIFHEMEVAGIEANVHTFGAMIDGCARAGQLPKAFGAYGIMI 392

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNM--QKLGVMADMASYNILLKACCLAGN 339
           S+NV  +  +FN+L+N    A  ++   +V  +M  +   +  D  +Y  L+ AC  AG 
Sbjct: 393 SKNVKPDRVIFNTLINACTRAGAVQRAFDVLTDMKAEATPIKPDHVTYGALISACARAGE 452

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A E+Y  ++    KG        Y+ +V   +       AL V +D+   GV P+ +
Sbjct: 453 VDRALEVYQNMRESNVKG----SPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEV 508

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +S+L++A  +A  +E+A  +   M + G +P +   + L+  C     +++A  ++   
Sbjct: 509 FFSALVDAAGHAQDIEKAFSIIANMKKEGLKPGAVVYSSLMGVCSNLGNWEKALEVY--- 565

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                       Q I ++                  +PT +T+N
Sbjct: 566 ----------------------------QDIRSS----------------GLQPTVSTFN 581

Query: 520 ILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
            LM A C    + R  +++ +++  G+ PN IS++IL+ AC
Sbjct: 582 ALMTALCEANQFTRALSILQDVKNSGIMPNQISYSILLRAC 622



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 160/388 (41%), Gaps = 53/388 (13%)

Query: 65  RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVS--EGNVSKFASMLSLEMVASGIVK 122
           R L +   +Y  + S  AK G+++    I   + V+  E NV  F +M         I  
Sbjct: 324 RGLKADCMFYTSLISACAKAGKVDLLFQIFHEMEVAGIEANVHTFGAM---------IDG 374

Query: 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE 182
             R G++    G    +    V P  +     F  L N C R   +G V+    ++  ++
Sbjct: 375 CARAGQLPKAFGAYGIMISKNVKPDRVI----FNTLINACTR---AGAVQRAFDVLTDMK 427

Query: 183 EFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALR 242
               P+K               PD    + Y  +     I  C    E  +  ++   +R
Sbjct: 428 AEATPIK---------------PD---HVTYGAL-----ISACARAGEVDRALEVYQNMR 464

Query: 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302
             +       SP  Y    ++  C   G+   +  +Y+DL+   V  +   F++L++   
Sbjct: 465 ESNVK----GSPACYTA--VVHACSQKGNVDYALLVYDDLKKDGVKPDEVFFSALVDAAG 518

Query: 303 H--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
           H  D++    +  NM+K G+      Y+ L+  C   GN   A E+Y +++       L+
Sbjct: 519 HAQDIEKAFSIIANMKKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDIR----SSGLQ 574

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
             V T++ ++    +A  +  AL + +D+ ++G+ PN I++S L+ AC    + + A+ L
Sbjct: 575 PTVSTFNALMTALCEANQFTRALSILQDVKNSGIMPNQISYSILLRACEKEKMADMALDL 634

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQ 448
           +   L  G +PN   C+ +   C++  Q
Sbjct: 635 YMTALSEGIKPNVGICDSITGLCLQQIQ 662



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEV 311
           P+      +I  C   G+  ++  +Y+++R  NV  +   + ++++  +   ++ + L V
Sbjct: 435 PDHVTYGALISACARAGEVDRALEVYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLV 494

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y +++K GV  D   ++ L+ A   AG+    ++ +  + +++ +G LK     YS+++ 
Sbjct: 495 YDDLKKDGVKPDEVFFSALVDA---AGHAQDIEKAFSIIANMKKEG-LKPGAVVYSSLMG 550

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           V ++   W+ AL+V +D+ S+G+ P   T+++L+ A   A    +A+ + +++  +G  P
Sbjct: 551 VCSNLGNWEKALEVYQDIRSSGLQPTVSTFNALMTALCEANQFTRALSILQDVKNSGIMP 610

Query: 432 NSQCCNILLQACVEACQFDRAFRLF 456
           N    +ILL+AC +    D A  L+
Sbjct: 611 NQISYSILLRACEKEKMADMALDLY 635



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 133/310 (42%), Gaps = 34/310 (10%)

Query: 274 KSRAIYED------LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASY 327
           K+R   ED      L  +  TL  Y     +  +A D+   L V   ++  G+ AD   Y
Sbjct: 274 KARGSVEDAFAFAKLMREFSTLQHYTMLLSVCCHAKDIDGALRVLALLESRGLKADCMFY 333

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             L+ AC  AG   L  +I+ E   +E  G+ + +V T+  ++   A A     A     
Sbjct: 334 TSLISACAKAGKVDLLFQIFHE---MEVAGI-EANVHTFGAMIDGCARAGQLPKAFGAYG 389

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPNSQCCNILLQACVE 445
            M+S  V P+ + +++LINAC  AG V++A  +  +M       +P+      L+ AC  
Sbjct: 390 IMISKNVKPDRVIFNTLINACTRAGAVQRAFDVLTDMKAEATPIKPDHVTYGALISACAR 449

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS-- 503
           A + DRA  ++++   S  +        G+    + + H   Q          N  Y+  
Sbjct: 450 AGEVDRALEVYQNMRESNVK--------GSPACYTAVVHACSQK--------GNVDYALL 493

Query: 504 SFD--KRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
            +D  K+   KP    ++ L+ A     D  +  +++  M+  GL P  + ++ L+  C 
Sbjct: 494 VYDDLKKDGVKPDEVFFSALVDAAGHAQDIEKAFSIIANMKKEGLKPGAVVYSSLMGVCS 553

Query: 560 GSGNVEGALQ 569
             GN E AL+
Sbjct: 554 NLGNWEKALE 563



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 117/284 (41%), Gaps = 69/284 (24%)

Query: 304 DLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
           ++KF ++VY +M K G + D +     + KA  LA   V   + Y   K   A+G ++ D
Sbjct: 226 NIKFYIDVYASMLKAGRIKDCLKLLGEMDKAGKLARMKVNHSKFYEACK---ARGSVE-D 281

Query: 363 VFTYSTIVKVFADAKWWQM-------------ALKVKEDMLSAGVTPNTITWSSLINACA 409
            F ++ +++ F+  + + M             AL+V   + S G+  + + ++SLI+ACA
Sbjct: 282 AFAFAKLMREFSTLQHYTMLLSVCCHAKDIDGALRVLALLESRGLKADCMFYTSLISACA 341

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
            AG V+    +F EM  AG E N      ++  C  A Q  +AF  +    +SK      
Sbjct: 342 KAGKVDLLFQIFHEMEVAGIEANVHTFGAMIDGCARAGQLPKAFGAY-GIMISK------ 394

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CT 527
                                                   + KP    +N L+ AC    
Sbjct: 395 ----------------------------------------NVKPDRVIFNTLINACTRAG 414

Query: 528 DYYRVKALMNEMR--TVGLSPNHISWTILIDACGGSGNVEGALQ 569
              R   ++ +M+     + P+H+++  LI AC  +G V+ AL+
Sbjct: 415 AVQRAFDVLTDMKAEATPIKPDHVTYGALISACARAGEVDRALE 458


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 147/333 (44%), Gaps = 33/333 (9%)

Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNA 302
           D + KH   P+     T+ID     G   ++ A+ + +   +     Y FN  +N     
Sbjct: 490 DMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDT----YAFNCCINGLSKL 545

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
            D+   L+VY  M +L ++ D  ++NIL+   C AGN   A  ++ E   + AK  L+ D
Sbjct: 546 GDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEE---MVAKN-LQPD 601

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V T+  ++     A   + A  + + M + GV PN +T+++L++    +G +E+A    E
Sbjct: 602 VMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLE 661

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRL---FRSWTLSKTQVALGEDYDGNTDRI 479
           EM+ +GC P+S     L+ A   A + D A +L    +S+      V      DG     
Sbjct: 662 EMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWK-- 719

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-----DYYRVKA 534
                + +Q+IT     V   H+          P   TYN L+ + C      +  R+  
Sbjct: 720 ---SGQTEQAITVLEEMVGKGHH----------PDVVTYNTLIDSLCKAGDLEEARRLHG 766

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            M+   +    PN +++++LI+     G ++ A
Sbjct: 767 DMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEA 799



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 123/285 (43%), Gaps = 55/285 (19%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA----QEIYGEVKHLEAKGVLKLDVF 364
           L++   ++  G   D  +YNIL+     +G T  A    +E+ G+  H         DV 
Sbjct: 692 LQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHP--------DVV 743

Query: 365 TYSTIVKVFADAKWWQMALKVKEDM---LSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           TY+T++     A   + A ++  DM   +S    PN +T+S LIN     G +++A  L 
Sbjct: 744 TYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELI 803

Query: 422 EEMLQAGCE--PNSQCCNILLQAC------VEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
           +EM++  C+  PN    N  L          EAC+  R+ R   S  +S   V      D
Sbjct: 804 QEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLR-DGSLRVSPDTVTFSTLID 862

Query: 474 G-----NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACC 526
           G      TD   N+                      FD   +  + P   TYN+LM   C
Sbjct: 863 GLCKCGQTDEACNV----------------------FDDMIAGGYVPNVVTYNVLMNGLC 900

Query: 527 -TDYY-RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            TD   R  A++  M   G++P+ I++++L+DA   + +V+ AL+
Sbjct: 901 KTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALE 945



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 118/525 (22%), Positives = 205/525 (39%), Gaps = 87/525 (16%)

Query: 74   YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV 133
            Y  +   L K GR+EE    +E +V S G V    +  SL      +    R  R D  +
Sbjct: 640  YNALVHGLCKSGRIEEACQFLEEMV-SSGCVPDSITYGSL------VYALCRASRTDDAL 692

Query: 134  GVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDE 193
             ++ +L   G  P    D   + +L +    L  SG+ E  +    VLEE          
Sbjct: 693  QLVSELKSFGWDP----DTVTYNILVD---GLWKSGQTEQAI---TVLEEM--------- 733

Query: 194  EFRIVQLCVNK---PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250
                    V K   PDV              + +   +    K  DL  A R +      
Sbjct: 734  --------VGKGHHPDV--------------VTYNTLIDSLCKAGDLEEARRLHGDMSSR 771

Query: 251  LSS---PNMYICRTIIDVCGIC--GDYMKSRAIYEDL--RSQNVTLNIYVFNSLMN--VN 301
            +S    PN+     +I+  G+C  G   ++R + +++  +S +V  NI  +NS ++    
Sbjct: 772  VSRCCVPNVVTYSVLIN--GLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCK 829

Query: 302  AHDLKFTLEVYKNMQ--KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
               +    E+ ++++   L V  D  +++ L+   C  G T  A  ++ +   + A G +
Sbjct: 830  QSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDD---MIAGGYV 886

Query: 360  KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
              +V TY+ ++         + A  + E M+  GVTP+ IT+S L++A   A  V++A+ 
Sbjct: 887  P-NVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALE 945

Query: 420  LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
            L   M   GC PN    N ++    ++ Q   AF++F   TL          Y    D +
Sbjct: 946  LLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGL 1005

Query: 480  SNMEHKDK-----QSITNTPNFVPNSHYSSFDK------------RFSFKPTTTTYNILM 522
                   +      ++ +   +  N   +   K                 P   T+NIL+
Sbjct: 1006 FRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILI 1065

Query: 523  KACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
               C   ++ +  AL  EM    L P+ +++  LID    +G VE
Sbjct: 1066 AGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVE 1110



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 154/370 (41%), Gaps = 46/370 (12%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K  +L + +  ++   +    P++    T+ID     GD  ++R ++ D+ S++   N+ 
Sbjct: 228 KSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVV 287

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNMQK--LGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            ++ L+N       +    E+ + M +    V+ ++ +YN  L   C    T  A E+  
Sbjct: 288 TYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMR 347

Query: 349 EVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
            ++     G L++  D  T+ST++           A  V +DM++ G  PN IT+++L+N
Sbjct: 348 SLR----DGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 403

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR---SWTLSK 463
               A  +E+A  + E M+  G  P+    ++L+ A  +A + D A  L     S   + 
Sbjct: 404 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 463

Query: 464 TQVALGEDYDG--NTDRISN-MEHKDKQSITNTPNFVPN--SHYSSFDKRFSF------- 511
             V      DG   +DR     +  D  ++ +    VP+  ++ +  D  F         
Sbjct: 464 NVVTFNSIIDGLCKSDRSGEAFQMFDDMALKH--GLVPDKITYCTLIDGLFRTGRAGQAE 521

Query: 512 -------KPTTTTYNILMKACCT-------DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
                   P T  +N     CC        D  R   + N M  + L P+ +++ ILI  
Sbjct: 522 ALLDAMPDPDTYAFN-----CCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAG 576

Query: 558 CGGSGNVEGA 567
              +GN E A
Sbjct: 577 ACKAGNFEQA 586



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 122/276 (44%), Gaps = 34/276 (12%)

Query: 324 MASYNILLKACCLAGNTVLAQEIY-GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           +A YNI+L++ C AG T  A EI+ GE+    A+  +   + TY+TI+     +      
Sbjct: 180 VADYNIVLQSLCRAGETARALEIFRGEM----ARDGVAPTIVTYNTIINGLCKSNELGAG 235

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +++ E+++  G  P+ +T+++LI++   AG +E+A  L  +M    C PN    ++L+  
Sbjct: 236 MELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLING 295

Query: 443 CVEACQFDRAFRLFRSWTLSKTQV-----ALGEDYDG------NTDRISNMEHKDKQSIT 491
             +  + D A  L +  T     V           DG        +    M      S+ 
Sbjct: 296 LCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR 355

Query: 492 NTPNFVPNSHY--------------SSFDKRFS--FKPTTTTYNILMKACCT--DYYRVK 533
            +P+ V  S                S FD   +  + P   TYN L+   C      R  
Sbjct: 356 VSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAH 415

Query: 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           A++  M   G++P+ I++++L+DA   +  V+ AL+
Sbjct: 416 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALE 451


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 150/360 (41%), Gaps = 63/360 (17%)

Query: 222 ILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           I++ + ++ F   G+K D     + Y        SP++ +  T +D     G+  K RA+
Sbjct: 483 IVYTSLIKNFFNHGRKED---GHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539

Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           +E+++++    +   ++ L++  + A     T E++ +M++ G + D  +YNI++   C 
Sbjct: 540 FEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCK 599

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G    A ++  E+K    KG  +  V TY +++   A       A  + E+  S  +  
Sbjct: 600 CGKVNKAYQLLEEMK---TKG-FEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL 655

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N + +SSLI+     G +++A  + EE++Q G  PN    N LL A V+A + + A   F
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCF 715

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
           +S                                                K     P   
Sbjct: 716 QSM-----------------------------------------------KELKCTPNQV 728

Query: 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV--EGALQCRF 572
           TY IL+   C    + +      EM+  G+ P+ IS+T +I     +GN+   GAL  RF
Sbjct: 729 TYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRF 788



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 41/222 (18%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           L  A   ++ +K      N+ I  ++ID  G  G   ++  I E+L  + +T N+Y +NS
Sbjct: 638 LDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNS 697

Query: 297 LMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           L++  V A ++   L  +++M++L    +  +Y IL+   C                   
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLC------------------- 738

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
                K+  F  + +        +WQ       +M   G+ P+TI+++++I+  A AG +
Sbjct: 739 -----KVRKFNKAFV--------FWQ-------EMQKQGMKPSTISYTTMISGLAKAGNI 778

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            +A  LF+     G  P+S C N +++      +   AF LF
Sbjct: 779 AEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLF 820



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 7/236 (2%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           LF   +R F K+  + SAL   D  K      ++ +    ID  G  G    +   + ++
Sbjct: 205 LFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEI 264

Query: 283 RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            +  +  +   + S++ V   A+ L   +E++++++K   +    +YN ++     AG  
Sbjct: 265 EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKF 324

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
               E Y  ++   AKG +   V  Y+ I+           ALKV E+M      PN  T
Sbjct: 325 ---DEAYSLLERQRAKGSIP-SVIAYNCILTCLRKMGKVDEALKVFEEM-KKDAAPNLST 379

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           ++ LI+    AG ++ A  L + M +AG  PN +  NI++    ++ + D A  +F
Sbjct: 380 YNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMF 435



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 121/289 (41%), Gaps = 31/289 (10%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E+++ ++   N+  +N L+++   A  L    E+  +MQK G+  ++ + NI++   C
Sbjct: 365 VFEEMK-KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLC 423

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +     A  ++ E+ +     V   D  T+ +++           A KV E ML +   
Sbjct: 424 KSQKLDEACAMFEEMDY----KVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCR 479

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            N+I ++SLI    N G  E    ++++M+   C P+ Q  N  +    +A + ++   +
Sbjct: 480 TNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT- 514
           F      +        +  +    S + H   ++         N  Y  F   +S K   
Sbjct: 540 FEEIKARR--------FVPDARSYSILIHGLIKA------GFANETYELF---YSMKEQG 582

Query: 515 ----TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
               T  YNI++   C      +   L+ EM+T G  P  +++  +ID 
Sbjct: 583 CVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDG 631



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 116/295 (39%), Gaps = 32/295 (10%)

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           VN  D+  TL  ++ MQ+LG    +  +  L++     G    A  +  E+K       L
Sbjct: 181 VNHSDMMLTL--FQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMK----SSSL 234

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             D+  Y+  +  F       MA K   ++ + G+ P+ +T++S+I     A  +++A+ 
Sbjct: 235 DADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVE 294

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD------ 473
           +FE + +    P +   N ++     A +FD A+ L      +K  +     Y+      
Sbjct: 295 MFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQR-AKGSIPSVIAYNCILTCL 353

Query: 474 ---GNTD---RISNMEHKDKQSITNTPNFVPN--SHYSSFDKRFSFK---------PTTT 516
              G  D   ++     KD     +T N + +        D  F  +         P   
Sbjct: 354 RKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVR 413

Query: 517 TYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           T NI++   C         A+  EM     +P+ I++  LID  G  G V+ A +
Sbjct: 414 TVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYK 468


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 146/355 (41%), Gaps = 62/355 (17%)

Query: 217 VPRADILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
           VP A I++ + +R F   G+K D     + Y        SP++ +  T +D     G+  
Sbjct: 506 VPGA-IVYTSLIRSFFKCGRKED---GHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETE 561

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K RA++ ++ +     +   ++ L++  V A     T E++  M++ G + D  +YN ++
Sbjct: 562 KGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVI 621

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C +G    A ++  E+K    KG     V TY +++   A       A  + E+  S
Sbjct: 622 DGFCKSGKVNKAYQLLEEMK---VKG-HPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 677

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+  N + +SSLI+     G +++A  + EE++Q G  PN    N LL A V+A + + 
Sbjct: 678 NGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINE 737

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           A   F+S                                                K    
Sbjct: 738 ALICFQSM-----------------------------------------------KDLKC 750

Query: 512 KPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
            P   TY+IL+   C    + +      EM+ +GL PN I++T +I     +GN+
Sbjct: 751 PPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNI 805



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 108/231 (46%), Gaps = 6/231 (2%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P   + + + +    K   L  A   ++ +K +    N+ +  ++ID  G  G   ++  
Sbjct: 646 PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYL 705

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           I E+L  + +T N+Y +N L++  V A ++   L  +++M+ L    +  +Y+IL+   C
Sbjct: 706 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLC 765

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
                  A   + E++ L     LK +  TY+T++   A A     A  +     + G  
Sbjct: 766 RVRKFNKAFVFWQEMQKLG----LKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGI 821

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           P++ +++++I   ++A     A  LFEE    GC  +++ C +LL A  +A
Sbjct: 822 PDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKA 872



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 106/260 (40%), Gaps = 39/260 (15%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L ++  MQ+LG   ++  +  L++     G    A  +  E+K       L  D+  Y+ 
Sbjct: 215 LILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMK----SNSLDADIVLYNV 270

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            +  F  A    M+ K   +M S G+ P+ +T++S+I     A  +++A+ LFE++ Q  
Sbjct: 271 CIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNR 330

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD------GNTDRISN- 481
             P +   N ++     A +FD A+ L      +K  +     Y+      G   R+   
Sbjct: 331 KVPCAYAYNTMIMGYGSAGKFDEAYGLLERQK-AKGSIPSVIAYNCILTCLGKKRRVEEA 389

Query: 482 ---MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--M 536
               E   + ++ N P                      TYNIL+   C +     AL   
Sbjct: 390 LRIFEEMKRDAVPNVP----------------------TYNILIDMLCREGKLNAALEIR 427

Query: 537 NEMRTVGLSPNHISWTILID 556
           ++M   GL PN ++  I+ID
Sbjct: 428 DDMERAGLFPNVLTVNIMID 447



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 7/182 (3%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACC 335
           I+E+++   V  N+  +N L+++   + K    LE+  +M++ G+  ++ + NI++   C
Sbjct: 392 IFEEMKRDAVP-NVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLC 450

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            A     A  I+   + ++ K V   +  T+S+++           A  + E ML  G  
Sbjct: 451 KAQKLEEACSIF---EGMDDK-VCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHV 506

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P  I ++SLI +    G  E    +++EM+  GC P+    N  +    +A + ++   L
Sbjct: 507 PGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRAL 566

Query: 456 FR 457
           FR
Sbjct: 567 FR 568



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 114/269 (42%), Gaps = 38/269 (14%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           LF   +R F ++  + +AL   D  K +    ++ +    ID  G  G    S   + ++
Sbjct: 232 LFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEM 291

Query: 283 RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           +S  +  +   + S++ V   A+ L   +E+++ +++   +    +YN ++     AG  
Sbjct: 292 KSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKF 351

Query: 341 VLAQEIYGEVKHLEAKGVLK---------------------LDVF------------TYS 367
               E YG ++  +AKG +                      L +F            TY+
Sbjct: 352 ---DEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYN 408

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            ++ +         AL++++DM  AG+ PN +T + +I+    A  +E+A  +FE M   
Sbjct: 409 ILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDK 468

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLF 456
            C PN+   + L+    +  + D A+ L+
Sbjct: 469 VCTPNAVTFSSLIDGLGKCGRVDDAYSLY 497


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 157/355 (44%), Gaps = 30/355 (8%)

Query: 221 DILFCNFVR--EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           +I+  N+ +  EF K   ++S +      +K    P++     ++D     GD   + A+
Sbjct: 99  NIMVHNYCKALEFDKVDAVISEM------EKRCVFPDVVTHNVMVDARFRAGDAEAAMAL 152

Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
            + + S+ +   I  +NS++     +       EV+K M   GV  D+ S+ IL+   C 
Sbjct: 153 VDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 212

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G    A +IY E++H   +G+ K D+ ++S ++ +FA       A+    +M   G+ P
Sbjct: 213 VGEIEEALKIYKEMRH---RGI-KPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVP 268

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFRL 455
           + + ++ +I     AGL+  A+ + +EM+  GC P+    N LL   C E        RL
Sbjct: 269 DGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER-------RL 321

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
             +  L       G   D  T   + + H     I    +       +  ++R   +P  
Sbjct: 322 LDAEGLLNEMRERGVPPDLCT--FTTLIH--GYCIEGKLDKALQLFDTMLNQR--LRPDI 375

Query: 516 TTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            TYN L+   C   D  +   L ++M +  + PNH++++ILID+    G VE A 
Sbjct: 376 VTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAF 430



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 18/247 (7%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMK 274
           VP     F   +  +  +  L  AL+ +D        P++    T+ID  G+C  GD  K
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID--GMCRQGDLDK 393

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE----VYKNMQKLGVMADMASYNIL 330
           +  +++D+ S+ +  N   ++ L  +++H  K  +E        M   G++ ++ +YN +
Sbjct: 394 ANDLWDDMHSREIFPNHVTYSIL--IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSI 451

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKED 388
           +K  C +GN    Q      K L+   V K+  D+ TY+T++  +        A K+   
Sbjct: 452 IKGYCRSGNVSKGQ------KFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNM 505

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M    V P+ +T++ LIN  +  G V++A  +FE+M   G EP+      ++   V A  
Sbjct: 506 MEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGN 565

Query: 449 FDRAFRL 455
              AF+L
Sbjct: 566 SKEAFQL 572



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 34/302 (11%)

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCL 336
           Y  + S N  +N Y  N +++     L+F     V   M+K  V  D+ ++N+++ A   
Sbjct: 83  YRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFR 142

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           AG+   A  +   V  + +KG LK  + TY++++K    +  W  A +V ++M   GV P
Sbjct: 143 AGDAEAAMAL---VDSMVSKG-LKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAP 198

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA---F 453
           +  +++ LI      G +E+A+ +++EM   G +P+    + L+       + D A    
Sbjct: 199 DVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYL 258

Query: 454 RLFRSWTLSKTQVALGEDYDG--NTDRISN-MEHKDKQ-SITNTPNFVPNSHYSSFDKRF 509
           R  R + L    V       G      +S+ +  +D+       P+ V            
Sbjct: 259 REMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVV------------ 306

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                  TYN L+   C +   + A  L+NEMR  G+ P+  ++T LI      G ++ A
Sbjct: 307 -------TYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 359

Query: 568 LQ 569
           LQ
Sbjct: 360 LQ 361



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 154/353 (43%), Gaps = 29/353 (8%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           R G  D    V K++++ GVAP    D   F +L     R+   GE+E     +++ +E 
Sbjct: 177 RSGMWDKAWEVFKEMDDFGVAP----DVRSFTILIGGFCRV---GEIEE---ALKIYKEM 226

Query: 185 R-LPVKELDEEFR-IVQLCVNKPDVNLAIRYA------CIVPRADILFCNFVREFGKKRD 236
           R   +K     F  ++ L   +  ++ A+ Y        +VP   +++   +  F +   
Sbjct: 227 RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDG-VIYTMVIGGFCRAGL 285

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YMKSRAIYEDLRSQNVTLNIYVF 294
           +  ALR  D        P++    T+++  G+C +   + +  +  ++R + V  ++  F
Sbjct: 286 MSDALRVRDEMVGCGCLPDVVTYNTLLN--GLCKERRLLDAEGLLNEMRERGVPPDLCTF 343

Query: 295 NSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
            +L++    + K    L+++  M    +  D+ +YN L+   C  G+   A +++ ++  
Sbjct: 344 TTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHS 403

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
            E    +  +  TYS ++    +    + A    ++M++ G+ PN +T++S+I     +G
Sbjct: 404 RE----IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSG 459

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
            V +     ++M+     P+    N L+   ++  +   AF+L       K Q
Sbjct: 460 NVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQ 512


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 140/332 (42%), Gaps = 81/332 (24%)

Query: 290 NIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N   F++L+N  +   K    ++++  M K+G   D+ +Y+ ++   C  G+T +A ++ 
Sbjct: 46  NHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQL- 104

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS---- 403
             +K +E KG  K +V  YSTI+      K    A++   +M++ G++PN +T+SS    
Sbjct: 105 --LKKMEEKGC-KPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHG 161

Query: 404 -------------------------------LINACANAGLVEQAMHLFEEMLQAGCEPN 432
                                          L++  +  G++ +A  +FE M++ G EPN
Sbjct: 162 FCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPN 221

Query: 433 SQCCNILLQACVEACQFDRAFRLF------------RSWT-LSKTQVALGEDYDGNTDRI 479
               N L+       Q D A +LF            RS+  L K     G   D     +
Sbjct: 222 VNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGR-IDEAKGLL 280

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMN 537
           + M HK                        +  P T TY+ LMK  C D     A  L+ 
Sbjct: 281 AEMSHK------------------------ALTPDTVTYSTLMKGFCQDGRPQDAQKLLE 316

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           EMR+ GL P+ ++++I++D     G+++ A +
Sbjct: 317 EMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFE 348



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 6/214 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P+      ++D     G  ++++ ++E +  + V  N+  +N+LM+   +   +    ++
Sbjct: 185 PDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKL 244

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M + G    + SYNIL+K  C +G    A+ +  E+ H      L  D  TYST++K
Sbjct: 245 FNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSH----KALTPDTVTYSTLMK 300

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F      Q A K+ E+M S G+ P+ +T+S +++     G +++A  L + M ++  EP
Sbjct: 301 GFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEP 360

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           N     IL+Q      + + A  LF +  +   Q
Sbjct: 361 NIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQ 394



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 33/301 (10%)

Query: 286 NVTLNIYVFNSLMNVNAHD----LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           N+  ++Y    L+N   H       F   V  NM KLG+  +  +++ LL         +
Sbjct: 5   NIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKII 64

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A +++ E+     K   + DV TYSTI+          MA+++ + M   G  PN + +
Sbjct: 65  DAVKLFDEM----VKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVY 120

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT- 460
           S++I++     L+ +AM    EM+  G  PN    + +L       + + A  LF+    
Sbjct: 121 STIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVE 180

Query: 461 --LSKTQVALGEDYDGNTDR---------ISNMEHKDKQSITNTPN-----FVPNSHYSS 504
             +    V      DG +              M  K  +   NT N     +   S    
Sbjct: 181 RNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDE 240

Query: 505 FDKRFSF------KPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILID 556
             K F+        P+  +YNIL+K  C        K L+ EM    L+P+ ++++ L+ 
Sbjct: 241 AQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMK 300

Query: 557 A 557
            
Sbjct: 301 G 301



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 106/223 (47%), Gaps = 11/223 (4%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILL 331
           +++ +  ++  + +T +   +++LM     D +     ++ + M+  G++ D+ +Y+I+L
Sbjct: 275 EAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVL 334

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C  G+   A E+   ++  E+K  ++ ++F Y+ +++   +    + A ++  ++  
Sbjct: 335 DGLCKQGHLDEAFELLKAMQ--ESK--IEPNIFIYTILIQGMCNFGKLEAARELFSNLFV 390

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+ P+ +T++ +I+     GL  +A  LF +M   GC PNS   N+++Q  +       
Sbjct: 391 KGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSN 450

Query: 452 AFRLF-----RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           A RL      R ++   +   +  D +   + IS   H   Q 
Sbjct: 451 AGRLIEEMVGRGFSADSSTFQMLSDLESRDEIISLFMHGSSQG 493


>gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera]
          Length = 1550

 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 100/449 (22%), Positives = 172/449 (38%), Gaps = 97/449 (21%)

Query: 164  RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF--RIVQLCVNKPDVNLAIRYACIVPRAD 221
            RLL  G +   + L+E +E+  L   ++D+ +  +  ++C ++  V  A R+A ++P   
Sbjct: 869  RLLSEGRLSDCIQLLEDMEKMGL--LDMDKVYHAKFFKICRSQKAVTEAFRFAKLIPTPT 926

Query: 222  ILFCN--------------------FVREFGKKRD--LVSALRAYDASKKHLSS------ 253
            +   N                     VRE G K D  L + L +  A    + +      
Sbjct: 927  LSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAMFEVFH 986

Query: 254  --------PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----N 301
                    PN++    +ID CG  G   K+   Y  +RS+ V  +  VFN+L+       
Sbjct: 987  EMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITACGQSG 1046

Query: 302  AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
            A D  F +      +   +  D  +   L+KAC  AG    A+E+Y  +     KG  ++
Sbjct: 1047 AVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQYNIKGTPEV 1106

Query: 362  DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
                Y+  V   +    W+ A  V  DM   GV P+ +  S+LI+   +AG ++ A  + 
Sbjct: 1107 ----YTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVI 1162

Query: 422  EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            +E    G        + L+ AC  A  + +A  L+                         
Sbjct: 1163 QEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI---------------------- 1200

Query: 482  MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEM 539
                                     K     PT +T N L+ A C      KA+  +++M
Sbjct: 1201 -------------------------KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDM 1235

Query: 540  RTVGLSPNHISWTILIDACGGSGNVEGAL 568
            +  GL PN I+++IL+ A     +++  L
Sbjct: 1236 KRAGLCPNTITYSILLVASEKKDDIDVGL 1264



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 8/185 (4%)

Query: 270  GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASY 327
            GD+  + ++Y D+  + V  +    ++L++V  H   L    EV +  +  G+   + SY
Sbjct: 1118 GDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSY 1177

Query: 328  NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            + L+ AC  A N   A E+Y ++K ++    L   V T + ++    + +  + A++V  
Sbjct: 1178 SSLMGACSNAKNWQKALELYVDIKSMK----LNPTVSTMNALITALCEGEQLEKAMEVLS 1233

Query: 388  DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            DM  AG+ PNTIT+S L+ A      ++  + +  +  +    PN   C  L+  C+   
Sbjct: 1234 DMKRAGLCPNTITYSILLVASEKKDDIDVGLMILSQARKDSVAPNLVMCRCLVGMCLR-- 1291

Query: 448  QFDRA 452
            +F++A
Sbjct: 1292 RFEKA 1296



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 120/283 (42%), Gaps = 37/283 (13%)

Query: 317  KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
            KL     ++++N+L+  C  + ++  A ++   V+    +  LK D   Y+T++   A +
Sbjct: 920  KLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVR----EAGLKADCKLYTTLISTCAKS 975

Query: 377  KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                   +V  +M++A V PN  T+ +LI+ C  AG V +A   +  M     EP+    
Sbjct: 976  GKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVF 1035

Query: 437  NILLQACVEACQFDRAFRLF-----RSWTLSKTQVALGE-----DYDGNTDRISNM-EHK 485
            N L+ AC ++   DRAF +       +  +    + +G         G  DR   + +  
Sbjct: 1036 NALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMI 1095

Query: 486  DKQSITNTP---NFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN----- 537
            D+ +I  TP       +SH    D  F++   T   ++  K    D   + AL++     
Sbjct: 1096 DQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYT---DMTRKGVVPDEMFLSALIDVAGHA 1152

Query: 538  -----------EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
                       E R  G+    +S++ L+ AC  + N + AL+
Sbjct: 1153 GKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALE 1195



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 23/159 (14%)

Query: 261  TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
            +++  C    ++ K+  +Y D++S  +   +   N+L+        L+  +EV  +M++ 
Sbjct: 1179 SLMGACSNAKNWQKALELYVDIKSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRA 1238

Query: 319  GVMADMASYNILLKAC-------------------CLAGNTVLAQEIYGE-VKHLEAKGV 358
            G+  +  +Y+ILL A                     +A N V+ + + G  ++  E    
Sbjct: 1239 GLCPNTITYSILLVASEKKDDIDVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACA 1298

Query: 359  LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            L   V ++++  +   D KW   AL V  + +SAGV P 
Sbjct: 1299 LGEPVLSFNS-GRPQIDNKWTSSALMVYRETVSAGVIPT 1336


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/371 (20%), Positives = 153/371 (41%), Gaps = 84/371 (22%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--- 278
           ++F   +  + K   LV A+  +   K     P++  C +++      GD +K   +   
Sbjct: 155 VIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLL------GDLLKGNKVELF 208

Query: 279 ---YEDLRSQNVTLNIYVFNSLMNV-----NAHDLKFTL--------------EVYKNMQ 316
              ++ + +  V  ++Y + ++++      N  D K  L              E+ ++M 
Sbjct: 209 WKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMV 268

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
             G++ D+ +Y+IL+   C+   +  A+ +  E+  +     LK +  TY+ ++  F   
Sbjct: 269 DKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVG----LKPEPITYNALIDGFMRQ 324

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
              + A ++K++M++ G+  N I W++L+N    AG +E+A+ + +EM++ G EP+SQ  
Sbjct: 325 GDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTY 384

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           ++L++         RAF L                                         
Sbjct: 385 SLLIEGHCRGQNMARAFELLDEM------------------------------------- 407

Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTIL 554
                     K+    PT  TY++++     C +     A++ EM   GL PN + +T L
Sbjct: 408 ----------KKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTL 457

Query: 555 IDACGGSGNVE 565
           + A    G VE
Sbjct: 458 MTAHAKEGRVE 468



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 170/369 (46%), Gaps = 40/369 (10%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRS 284
           F+  + K  ++  A R ++        PN+ I   +I+  G C  G+  ++ +++  + S
Sbjct: 527 FIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIE--GHCKEGNVTEAFSVFRFILS 584

Query: 285 QNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + V  ++  ++ L++  + + K      ++  +Q+ G++ +  +YN L+   C  GN   
Sbjct: 585 RRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDK 644

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A ++   ++ +  KG+   D+ TY+ ++     A   + A  + +D+   G+TPN +T++
Sbjct: 645 ASQL---LEEMCIKGI-NPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYA 700

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           ++++    +     A  L EEML  G  P++   N++L  C +  +F++A  LF+   L 
Sbjct: 701 AMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQE-MLE 759

Query: 463 K---TQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPN--SHYSSFD--------- 506
           K   + V+     +G   + ++    H  ++ I     F+PN  ++ S  D         
Sbjct: 760 KGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEK--QFIPNHVTYTSLIDHNCKAGMMG 817

Query: 507 --KRFSFK-------PTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILI 555
             KR   +       PT  TY  L+       +   V AL  EM   G+ P+ +++ ++I
Sbjct: 818 EAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMI 877

Query: 556 DACGGSGNV 564
           DA    GNV
Sbjct: 878 DAYCREGNV 886



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 145/349 (41%), Gaps = 36/349 (10%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           + +++  A    D  KK   +P +     II+    CG+   + AI  ++    +  N  
Sbjct: 393 RGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAV 452

Query: 293 VFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           V+ +LM  +A +  ++ +  + + M++ G++ D+  YN L+   C A     A+    E+
Sbjct: 453 VYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEM 512

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
             LE +  L+ +  TY   +  ++ A   ++A +   +MLS GV PN   +++LI     
Sbjct: 513 --LERR--LRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK 568

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLS 462
            G V +A  +F  +L      + Q  ++L+       +   AF +F             +
Sbjct: 569 EGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFT 628

Query: 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
              +  G    GN D+ S +   ++  I                      P   TYNIL+
Sbjct: 629 YNSLISGSCKQGNVDKASQL--LEEMCIK------------------GINPDIVTYNILI 668

Query: 523 KACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              C   +  R K L +++   GL+PN +++  ++D    S N   A Q
Sbjct: 669 DGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQ 717



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 144/359 (40%), Gaps = 68/359 (18%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL---------------- 297
           PN  +  T++      G   +SR I E +R Q +  +++ +NSL                
Sbjct: 449 PNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTY 508

Query: 298 --------MNVNAH-------------DLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
                   +  NAH             +++     +  M   GV+ ++  Y  L++  C 
Sbjct: 509 LMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK 568

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            GN   A  ++   + + ++ VL+ DV TYS ++   +       A  +  ++   G+ P
Sbjct: 569 EGNVTEAFSVF---RFILSRRVLQ-DVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLP 624

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N  T++SLI+     G V++A  L EEM   G  P+    NIL+    +A + +RA  LF
Sbjct: 625 NAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLF 684

Query: 457 -----RSWTLS-KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
                R  T +  T  A+ + Y  + +  +  +  ++  +   P                
Sbjct: 685 DDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVP---------------- 728

Query: 511 FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             P    YN+++  CC +    KA  L  EM   G +   +S+  LI+    SG ++ A
Sbjct: 729 --PDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFAST-VSFNTLIEGYCKSGKLQEA 784



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 105/227 (46%), Gaps = 17/227 (7%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLN 290
           K  ++  A   +D  +    +PN      ++D  G C     + A  + E++  + V  +
Sbjct: 673 KAGEIERAKNLFDDIEGRGLTPNCVTYAAMVD--GYCKSKNPTAAFQLLEEMLLRGVPPD 730

Query: 291 IYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            +++N ++N    + KF   L++++ M + G  A   S+N L++  C +G    A  +  
Sbjct: 731 AFIYNVILNFCCKEEKFEKALDLFQEMLEKG-FASTVSFNTLIEGYCKSGKLQEANHLLE 789

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E+  +E + +   +  TY++++     A     A ++  +M    V P   T++SL++  
Sbjct: 790 EM--IEKQFIP--NHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGY 845

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA------CVEACQF 449
            N G + +   LFEEM+  G EP+     +++ A       +EAC+ 
Sbjct: 846 HNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKL 892



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 6/176 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV-- 311
           PN     ++ID     G   +++ ++ +++ +NV      + SL++   H++    EV  
Sbjct: 798 PNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLH-GYHNIGNMSEVSA 856

Query: 312 -YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYST 368
            ++ M   G+  D  +Y +++ A C  GN + A ++  E  VK +  K   +L + T S 
Sbjct: 857 LFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSV 916

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           I + F  A     A +V   M+  G   NT +   L++   N    E + +L ++M
Sbjct: 917 IARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQM 972


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 149/350 (42%), Gaps = 36/350 (10%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           ++R + S+LR Y    K L+S +  +      + G+C  G   ++  I+ ++  +    +
Sbjct: 68  RRRGIPSSLRIY--RPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPD 125

Query: 291 IYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            + +N L+N    D  L+  + +   MQ  G    + +Y  L+   C AG    A +I  
Sbjct: 126 SFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILD 185

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG--VTPNTITWSSLIN 406
           E++H   +G+   +  TY+ +++   D    + A+ V ++M   G    PN +T++ LI+
Sbjct: 186 EMEH---RGITP-NTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIH 241

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
                GL E  M   +EM+ +GC PN+     L+    +   F        +  L    V
Sbjct: 242 GLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSF------LEAAVLLNEMV 295

Query: 467 ALGED-----YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
           A+G +     Y+   D +  M   D         F         +K     P   TY  L
Sbjct: 296 AIGCELDVVIYNSLIDGLCKMGELD---------FAREMQILMVEK--GVAPDVFTYTSL 344

Query: 522 MKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           ++  C      +AL  M EMR  G+ PN +++T LI+    +   + ALQ
Sbjct: 345 IQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQ 394



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 4/128 (3%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M  +G   D+  YN L+   C  G    A+E+  ++  +E KGV   DVFTY+++++   
Sbjct: 294 MVAIGCELDVVIYNSLIDGLCKMGELDFAREM--QILMVE-KGVAP-DVFTYTSLIQGLC 349

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           DA     AL + ++M + G+ PN++T+++LIN    A   + A+ L  EM   G  P   
Sbjct: 350 DAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGD 409

Query: 435 CCNILLQA 442
              IL ++
Sbjct: 410 IYKILFKS 417



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 102/238 (42%), Gaps = 8/238 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  F     + +A+   D  +    +PN      +I     CG+  ++  + ++
Sbjct: 162 VTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKE 221

Query: 282 --LRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
             LR      N+  +  L++        +  +E    M   G   + A+Y  L+   C  
Sbjct: 222 MKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQK 281

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G+ + A  +  E+  +  +    LDV  Y++++           A +++  M+  GV P+
Sbjct: 282 GSFLEAAVLLNEMVAIGCE----LDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPD 337

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
             T++SLI    +AGL+++A+ L +EM   G  PNS     L+    +A + D A +L
Sbjct: 338 VFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQL 395


>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 727

 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 146/346 (42%), Gaps = 33/346 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SP       +I++    G  MK+    +++++Q +TLN   ++ L++  V   D      
Sbjct: 298 SPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANAFS 357

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+++M + G+  D  +YNILLKA C +     A ++ G +K       ++    TY TI+
Sbjct: 358 VFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQ----TYITII 413

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F      +MA K   +M  AG  PN  T++ +++     G +++A  + +EM  AG +
Sbjct: 414 DGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQ 473

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG------NTDRISN-ME 483
           PN +    L+Q      +   AF+  +      TQ      Y           R+ N + 
Sbjct: 474 PNFRSYTTLMQGFASIGEIGLAFKCLKRVN-EITQKPPIISYASLLKACCKAGRMQNAIA 532

Query: 484 HKDKQSITNTP--NFVPNSHYSSFDKRF---------------SFKPTTTTYNILMKACC 526
             ++ +    P  N++ N+    + +R                 F P   +Y   + ACC
Sbjct: 533 VTEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACC 592

Query: 527 T--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
              D  +    + EM+   L PN  ++TILI       + E AL C
Sbjct: 593 KAGDMQKATETIEEMKQQDLQPNLQTYTILIHGWTSVSHPEKALIC 638



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 150/362 (41%), Gaps = 39/362 (10%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           + N +R +   ++L  A+   +  +     PN      II   G  G+   +   ++   
Sbjct: 161 YNNLIRAYIMAQNLQGAVSCVEEMEIEGIFPNAATFSAIISGYGSSGNVEAAEKWFQRSV 220

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           S+N   N+ +++S+++    A +++    +  +M++ G+ A +  YNIL+          
Sbjct: 221 SENWNHNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYARCHIEA 280

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
               ++ ++K     G L     TY  ++ ++        AL+  ++M + G+T N  T+
Sbjct: 281 QCLNVFHKLKARIDTG-LSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTY 339

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           S L++     G    A  +FE+M +AG EP+    NILL+A  ++ Q  RA +L      
Sbjct: 340 SMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQL------ 393

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK--------- 512
                            +  M+ +       T   + +    + D R ++K         
Sbjct: 394 -----------------LGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAG 436

Query: 513 --PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             P  TTYN++M          R  ++++EM   G+ PN  S+T L+      G +  A 
Sbjct: 437 CRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIGEIGLAF 496

Query: 569 QC 570
           +C
Sbjct: 497 KC 498



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 8/233 (3%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  F K  D+  A +     K     PN      I+      G   ++ ++ +++ 
Sbjct: 409 YITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEME 468

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              V  N   + +LM    +  ++    +  K + ++     + SY  LLKACC AG   
Sbjct: 469 LAGVQPNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQ 528

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AKWWQMALKVKEDMLSAGVTPNTIT 400
            A  +  E+    A   + ++ + ++T++  +A     W+ A  + + M   G TP+  +
Sbjct: 529 NAIAVTEEM----AFAGVPMNNYIFNTLLDGWAQRGDMWE-AYGIMQKMRQEGFTPDIHS 583

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           ++S +NAC  AG +++A    EEM Q   +PN Q   IL+         ++A 
Sbjct: 584 YTSFVNACCKAGDMQKATETIEEMKQQDLQPNLQTYTILIHGWTSVSHPEKAL 636



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 11/197 (5%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V  Y+ +++ +  A+  Q A+   E+M   G+ PN  T+S++I+   ++G VE A   F+
Sbjct: 158 VHAYNNLIRAYIMAQNLQGAVSCVEEMEIEGIFPNAATFSAIISGYGSSGNVEAAEKWFQ 217

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
             +      N    + ++ A  +A   +RA  L         +  LG  Y+   D  +  
Sbjct: 218 RSVSENWNHNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGL-YNILMDGYARC 276

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMR 540
            H + Q +      V +   +  D   S  PT  TY  L+         +KAL    EM+
Sbjct: 277 -HIEAQCLN-----VFHKLKARIDTGLS--PTAVTYGCLINLYTKLGKMMKALEFCKEMK 328

Query: 541 TVGLSPNHISWTILIDA 557
             G++ N  ++++L+D 
Sbjct: 329 AQGITLNRNTYSMLVDG 345



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVY 312
           N YI  T++D     GD  ++  I + +R +  T +I+ + S +N    A D++   E  
Sbjct: 545 NNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETI 604

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M++  +  ++ +Y IL+       +   A   Y E+K   A G++      Y  +  +
Sbjct: 605 EEMKQQDLQPNLQTYTILIHGWTSVSHPEKALICYDEMK---AAGLIPDKPLYYCIVTSL 661

Query: 373 FADA 376
            + A
Sbjct: 662 LSKA 665


>gi|359474892|ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Vitis vinifera]
          Length = 1115

 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 99/438 (22%), Positives = 168/438 (38%), Gaps = 97/438 (22%)

Query: 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF--RIVQLCVNKPDVNLAIRYACIVPRAD 221
           RLL  G +   + L+E +E+  L   ++D+ +  +  ++C ++  V  A R+A ++P   
Sbjct: 434 RLLSEGRLSDCIQLLEDMEKMGL--LDMDKVYHAKFFKICRSQKAVTEAFRFAKLIPTPT 491

Query: 222 ILFCN--------------------FVREFGKKRD--LVSALRAYDASKKHLSS------ 253
           +   N                     VRE G K D  L + L +  A    + +      
Sbjct: 492 LSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAMFEVFH 551

Query: 254 --------PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----N 301
                   PN++    +ID CG  G   K+   Y  +RS+ V  +  VFN+L+       
Sbjct: 552 EMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITACGQSG 611

Query: 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
           A D  F +      +   +  D  +   L+KAC  AG    A+E+Y  +     KG  ++
Sbjct: 612 AVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQYNIKGTPEV 671

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
               Y+  V   +    W+ A  V  DM   GV P+ +  S+LI+   +AG ++ A  + 
Sbjct: 672 ----YTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVI 727

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
           +E    G        + L+ AC  A  + +A  L+                         
Sbjct: 728 QEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI---------------------- 765

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEM 539
                                    K     PT +T N L+ A C      KA+  +++M
Sbjct: 766 -------------------------KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDM 800

Query: 540 RTVGLSPNHISWTILIDA 557
           +  GL PN I+++IL+ A
Sbjct: 801 KRAGLCPNTITYSILLVA 818



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 8/185 (4%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASY 327
           GD+  + ++Y D+  + V  +    ++L++V  H   L    EV +  +  G+   + SY
Sbjct: 683 GDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSY 742

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           + L+ AC  A N   A E+Y ++K ++    L   V T + ++    + +  + A++V  
Sbjct: 743 SSLMGACSNAKNWQKALELYVDIKSMK----LNPTVSTMNALITALCEGEQLEKAMEVLS 798

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           DM  AG+ PNTIT+S L+ A      ++  + +  +  +    PN   C  L+  C+   
Sbjct: 799 DMKRAGLCPNTITYSILLVASEKKDDIDVGLMILSQARKDSVAPNLVMCRCLVGMCLR-- 856

Query: 448 QFDRA 452
           +F++A
Sbjct: 857 RFEKA 861



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 120/283 (42%), Gaps = 37/283 (13%)

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           KL     ++++N+L+  C  + ++  A ++   V+    +  LK D   Y+T++   A +
Sbjct: 485 KLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVR----EAGLKADCKLYTTLISTCAKS 540

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                  +V  +M++A V PN  T+ +LI+ C  AG V +A   +  M     EP+    
Sbjct: 541 GKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVF 600

Query: 437 NILLQACVEACQFDRAFRLF-----RSWTLSKTQVALGE-----DYDGNTDRISNM-EHK 485
           N L+ AC ++   DRAF +       +  +    + +G         G  DR   + +  
Sbjct: 601 NALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMI 660

Query: 486 DKQSITNTP---NFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN----- 537
           D+ +I  TP       +SH    D  F++   T   ++  K    D   + AL++     
Sbjct: 661 DQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYT---DMTRKGVVPDEMFLSALIDVAGHA 717

Query: 538 -----------EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
                      E R  G+    +S++ L+ AC  + N + AL+
Sbjct: 718 GKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALE 760



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 23/158 (14%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           +++  C    ++ K+  +Y D++S  +   +   N+L+        L+  +EV  +M++ 
Sbjct: 744 SLMGACSNAKNWQKALELYVDIKSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRA 803

Query: 319 GVMADMASYNILLKAC-------------------CLAGNTVLAQEIYGE-VKHLEAKGV 358
           G+  +  +Y+ILL A                     +A N V+ + + G  ++  E    
Sbjct: 804 GLCPNTITYSILLVASEKKDDIDVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACA 863

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           L   V ++++  +   D KW   AL V  + +SAGV P
Sbjct: 864 LGEPVLSFNS-GRPQIDNKWTSSALMVYRETVSAGVIP 900


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 8/206 (3%)

Query: 267 GICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMA 322
           G C       AI   + +RS  V  N+  ++SLMN    + + T   +++ +M K G+  
Sbjct: 253 GYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 312

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+A+Y  LL+  C  G  + +++++     L  +  +K D+ TY+T++     A     A
Sbjct: 313 DIATYRTLLQGHCKEGRVIESEKLF----DLMVRIGVKPDIITYNTLIDGCCLAGKMDEA 368

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            K+   M+S GV P+ +T+ +LIN       ++ A+ LF+EM+ +G  PN    NI+LQ 
Sbjct: 369 TKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQG 428

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVAL 468
                +   A  L+ S T S TQ+ L
Sbjct: 429 LFHTRRTAAAKELYVSITKSGTQLEL 454



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 109/215 (50%), Gaps = 6/215 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           PN+    ++++     G   ++R I++ +  + +  +I  + +L+  +  + +   + ++
Sbjct: 277 PNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKL 336

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M ++GV  D+ +YN L+  CCLAG    A ++   +  + + GV K D+ TY T++ 
Sbjct: 337 FDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL---LASMVSVGV-KPDIVTYGTLIN 392

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +        AL + ++M+S+GV+PN IT++ ++    +      A  L+  + ++G + 
Sbjct: 393 GYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQL 452

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
                NI+L    +    D A R+F++  L+  Q+
Sbjct: 453 ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 487



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 113/280 (40%), Gaps = 54/280 (19%)

Query: 281 DLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           D+ S N  LN +    +   + A  +   +EV   M K GVM D  +YN +L   C +G 
Sbjct: 200 DVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQ 259

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
               +E  G +K + + GV + +V TYS+++           A K+ + M   G+ P+  
Sbjct: 260 ---PKEAIGTLKKMRSDGV-EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIA 315

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+ +L+      G V ++  LF+ M++ G +P+    N L+  C  A + D A +L  S 
Sbjct: 316 TYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASM 375

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                 V++G                                          KP   TY 
Sbjct: 376 ------VSVG-----------------------------------------VKPDIVTYG 388

Query: 520 ILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
            L+   C  +      AL  EM + G+SPN I++ I++  
Sbjct: 389 TLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQG 428



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 33/262 (12%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK---GVLKLDVFTYS 367
           V + M +LG + D+ SYN LLK  C    +  A E+     H+ A    G    DV +Y+
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELL----HMMADDRGGGSPPDVVSYN 205

Query: 368 TIVKVF--------ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           T++  F          A+    A++V   M+  GV P+ +T++S+++   ++G  ++A+ 
Sbjct: 206 TVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 265

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
             ++M   G EPN    + L+    +  +   A ++F S T        G + D  T R 
Sbjct: 266 TLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMT------KRGLEPDIATYRT 319

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILMKACCTDYYRVKA--L 535
               H  +  +  +           FD   R   KP   TYN L+  CC      +A  L
Sbjct: 320 LLQGHCKEGRVIESEKL--------FDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL 371

Query: 536 MNEMRTVGLSPNHISWTILIDA 557
           +  M +VG+ P+ +++  LI+ 
Sbjct: 372 LASMVSVGVKPDIVTYGTLING 393



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 6/208 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++    T+ID C + G   ++  +   + S  V  +I  + +L+N       +   L +
Sbjct: 347 PDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALAL 406

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +K M   GV  ++ +YNI+L+       T  A+E+Y  +     K   +L++ TY+ I+ 
Sbjct: 407 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSI----TKSGTQLELSTYNIILH 462

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                     AL++ +++    +   T T++ +I A    G +++A  LF      G  P
Sbjct: 463 GLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVP 522

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSW 459
           + +  +++ +  +E    +    LF S 
Sbjct: 523 DVRTYSLMAENLIEQGSLEELDDLFLSM 550


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 151/328 (46%), Gaps = 27/328 (8%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----NAHDL 305
           SPN+    T+I+  G+C  G   K+  + +D++      N+  +N+L++          +
Sbjct: 227 SPNLITFNTVIN--GLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKM 284

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
                + K M +  V  +  ++N+L+   C   N   A +++ E   ++++G LK  V T
Sbjct: 285 YKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEE---MQSQG-LKPTVVT 340

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+++V    +      A  + ++MLS+ + PN IT+++LIN      L+E+A  LF+ + 
Sbjct: 341 YNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIG 400

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
           + G  PN    N LL    +  + + AF L +   L K  +     Y  N   +      
Sbjct: 401 KQGLTPNVITFNTLLHGYCKFGKMEEAF-LLQKVMLEKGFLPNASTY--NCLIVGFCREG 457

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVG 543
             + + N  N +         +    K  T TYNIL+ A C      KA  L++EM   G
Sbjct: 458 KMEEVKNLLNEM---------QCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKG 508

Query: 544 LSPNHISWTILIDACGGSGNVEGALQCR 571
           L P+H+++ IL++     GN+  AL  R
Sbjct: 509 LKPSHLTYNILLNGYCMEGNLRAALNLR 536



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 100/233 (42%), Gaps = 49/233 (21%)

Query: 254 PNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKF 307
           PN+     +I+  G C   +  ++R +++++  Q +T N+  FN+L++        +  F
Sbjct: 371 PNVITYNALIN--GYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAF 428

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            L+  K M + G + + ++YN L+   C  G     +E+   +  ++ +GV K D  TY+
Sbjct: 429 LLQ--KVMLEKGFLPNASTYNCLIVGFCREGKM---EEVKNLLNEMQCRGV-KADTVTYN 482

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTP------------------------------- 396
            ++  + + K  + A ++ ++ML  G+ P                               
Sbjct: 483 ILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKE 542

Query: 397 ----NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
               N +T++ LI      G +E A  L  EML+ G  PN     I+ +  +E
Sbjct: 543 GRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMME 595


>gi|299473702|emb|CBN78095.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 537

 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 136/331 (41%), Gaps = 37/331 (11%)

Query: 273 MKSRAIYEDL-------RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMAD 323
           +  R  +ED        R + V +N+Y++NS ++    A   K  + + K M+K G+  D
Sbjct: 105 LGQRGQWEDATRALVGARVRGVPVNVYMYNSAISAVSKAGRWKEAMSMMKQMEKDGIAFD 164

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
             +Y+ ++ AC   G    A E+  E+  +     +  D+  Y   ++   DA   + AL
Sbjct: 165 EFTYSSVIVACGRGGQPRKALELLDEMVQVHG---IAPDMICYGAAIQACGDAGLTEEAL 221

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
            + E M   G+ P+   ++S I AC   G  E+A++L  EM   G  P+       +QAC
Sbjct: 222 SLMEKMSREGLLPDKTAYNSAIIACGEKGQWEKALNLLGEMRSKGLRPDQNSYRFAMQAC 281

Query: 444 VEACQFDRAFRLFRSWT-------LSKTQVAL-----GEDYDGNTDRISNMEH------- 484
               +++RA +L            ++  Q AL        ++   D IS M+        
Sbjct: 282 STGGRWERALQLLHEMEEDGSTPDVAAFQTALDALKDAAQWEKAMDLISEMDELGVPPSE 341

Query: 485 ----KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN--E 538
                   +      ++P S        +  +P   TY  ++KAC        AL    +
Sbjct: 342 GCFAAAIAACAEVGEWLPASTARKLMGYYGLQPELETYKSIIKACLVGKEFNMALTTLFD 401

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           ++  G   +  +W +LI+ C   G  + AL+
Sbjct: 402 LQKSGRRADQETWDMLIEICAVVGKWDAALE 432



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 85/206 (41%), Gaps = 12/206 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I+ C    ++ K  +L+  +R    SK      N Y  R  +  C   G + ++  +  +
Sbjct: 243 IIACGEKGQWEKALNLLGEMR----SKGLRPDQNSY--RFAMQACSTGGRWERALQLLHE 296

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +     T ++  F + ++   +A   +  +++   M +LGV      +   + AC   G 
Sbjct: 297 MEEDGSTPDVAAFQTALDALKDAAQWEKAMDLISEMDELGVPPSEGCFAAAIAACAEVGE 356

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            + A       + L     L+ ++ TY +I+K     K + MAL    D+  +G   +  
Sbjct: 357 WLPAST----ARKLMGYYGLQPELETYKSIIKACLVGKEFNMALTTLFDLQKSGRRADQE 412

Query: 400 TWSSLINACANAGLVEQAMHLFEEML 425
           TW  LI  CA  G  + A+ +  ++ 
Sbjct: 413 TWDMLIEICAVVGKWDAALEIIRDIF 438


>gi|298712109|emb|CBJ32990.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 650

 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 149/353 (42%), Gaps = 22/353 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F +  +  G +      LR  D   +     N Y   + +      G + ++ A+ + + 
Sbjct: 26  FISTAKVRGARGQWREVLRLLDKMAEDGIPLNSYAYNSALSSIAKSGRWREALALRDRML 85

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           S+ V L+ Y F++L+       ++   +E+ + M   GV  D  SYN  L      G++ 
Sbjct: 86  SEGVRLDGYTFSALIEACSKGGNVAKGVELLREMVDAGVARDCFSYNAALHGFVRNGDSK 145

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  +   ++ + A GV + D  TY T++    ++  W++ + + + M S G+TPN  ++
Sbjct: 146 NALLM---LEDMVADGV-RPDAITYGTLLACCGNSGEWKLCMSLMDRMRSEGITPNAYSF 201

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL---FRS 458
           S LI AC   G    A+   E+M  +G  PN     + + AC  A Q++ A RL     +
Sbjct: 202 SPLIKACGKEGRWALAVKTLEDMEASGPTPNEHNWLMAIGACGNAGQWEEALRLIDKLEA 261

Query: 459 WTLSKTQVALGED-YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
             L    V +    Y+   D  +     D Q +        N          +  P   T
Sbjct: 262 LALGGEGVPMSTTMYNFGIDACARAGRWD-QGVALLERMKSNP---------ATPPDAQT 311

Query: 518 YNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           Y+ L+ AC  D     AL  + EMR VGL+P   ++   + A   +G  + AL
Sbjct: 312 YSYLIDACAKDANLEDALAYLTEMRAVGLAPTFFAYISAMSAIKVAGQWKEAL 364



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 86/161 (53%), Gaps = 8/161 (4%)

Query: 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358
           ++NA   +   E+ K M+  GV  D+ S+NIL+ AC   G+   A  +  ++K L     
Sbjct: 422 DLNAWRAEDPDELVKRMENNGVELDVMSFNILIDACARGGSHWAAARLLTKMKSLG---- 477

Query: 359 LKLDVFTYSTIV---KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           L+ +  +Y+ I+   +   D +W ++AL + ++M  +G+TP+ I++++ I +CA AG   
Sbjct: 478 LRPNSLSYNPIIHSCRGGTDEEW-RLALDLLDEMRKSGLTPDVISFNTAITSCAKAGDWR 536

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           ++++LF  M   G  P+    N ++ AC +  Q+     L 
Sbjct: 537 RSLNLFAGMKVEGVTPDILSYNAVISACAKGGQWRIGLELL 577



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 142/342 (41%), Gaps = 33/342 (9%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV-- 311
           P+     T++  CG  G++    ++ + +RS+ +T N Y F+ L+     + ++ L V  
Sbjct: 161 PDAITYGTLLACCGNSGEWKLCMSLMDRMRSEGITPNAYSFSPLIKACGKEGRWALAVKT 220

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIV 370
            ++M+  G   +  ++ + + AC  AG    A  +  +++ L   G  + +    Y+  +
Sbjct: 221 LEDMEASGPTPNEHNWLMAIGACGNAGQWEEALRLIDKLEALALGGEGVPMSTTMYNFGI 280

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
              A A  W   + + E M S   TP +  T+S LI+ACA    +E A+    EM   G 
Sbjct: 281 DACARAGRWDQGVALLERMKSNPATPPDAQTYSYLIDACAKDANLEDALAYLTEMRAVGL 340

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV------------ALGED------ 471
            P        + A   A Q+  A  L     ++K ++            A G+D      
Sbjct: 341 APTFFAYISAMSAIKVAGQWKEALSLLDE--MAKGRLISDVFSFYNVVDAYGKDGQLART 398

Query: 472 ---YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF---SFKPTTTTYNILMKAC 525
                 N   I+     + +S  +  N           KR      +    ++NIL+ AC
Sbjct: 399 LVQTSANPTEIAADSENEMRSDADL-NAWRAEDPDELVKRMENNGVELDVMSFNILIDAC 457

Query: 526 C--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
                ++    L+ +M+++GL PN +S+  +I +C G  + E
Sbjct: 458 ARGGSHWAAARLLTKMKSLGLRPNSLSYNPIIHSCRGGTDEE 499



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 7/124 (5%)

Query: 254 PNMYICRTIIDVC--GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN      II  C  G   ++  +  + +++R   +T ++  FN+ +     A D + +L
Sbjct: 480 PNSLSYNPIIHSCRGGTDEEWRLALDLLDEMRKSGLTPDVISFNTAITSCAKAGDWRRSL 539

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            ++  M+  GV  D+ SYN ++ AC   G   +  E+  +V+   A   L+ +  TY++ 
Sbjct: 540 NLFAGMKVEGVTPDILSYNAVISACAKGGQWRIGLELLAKVR---ADPTLEANQRTYTSA 596

Query: 370 VKVF 373
           +  F
Sbjct: 597 INCF 600


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 135/323 (41%), Gaps = 22/323 (6%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTL 309
           S P ++    +ID     GD   +R ++E+++ + +  +   +NS+++       L  T+
Sbjct: 129 SKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTV 188

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
             ++ M+ +    D+ +YN L+   C +G      E Y E+K    +  LK +V +YST+
Sbjct: 189 YFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMK----QSGLKPNVVSYSTL 244

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           V  F      Q A+K   DM   G  PN  T++SL++A    G +  A  L  EML+ G 
Sbjct: 245 VDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGV 304

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ- 488
           E N      L+    +A +   A +LF     +     L   Y+         ++ D+  
Sbjct: 305 EWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLAS-YNALIHGFVKAKNMDRAL 363

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSP 546
            + N              K    +P    Y   +   C        K +MNEM+  G+  
Sbjct: 364 ELLNEL------------KGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKA 411

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
           N + +T L+DA   SGN    L 
Sbjct: 412 NTLIYTTLMDAYFKSGNPTEGLH 434



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 143/355 (40%), Gaps = 56/355 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   V  F K+  +  A++ Y   ++    PN +   +++D     G+   +  +  +
Sbjct: 239 VSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANE 298

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    V  N+  + +L++   +A  +K   +++  M   GV+ ++ASYN L+     A N
Sbjct: 299 MLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKN 358

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A E+  E+K    +G+ + D+  Y T +      +  + A  V  +M   G+  NT+
Sbjct: 359 MDRALELLNELK---GRGI-QPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTL 414

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +++L++A   +G   + +HL EEM +   E       +L+    +     +A       
Sbjct: 415 IYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAI------ 468

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                      DY G   R+SN                           F  +P    Y 
Sbjct: 469 -----------DYFG---RMSN--------------------------DFGLQPNAAVYT 488

Query: 520 ILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            ++   C +  +VKA   L  +M   GL P+  ++T L+D     GN+  AL  R
Sbjct: 489 AMIDGLCKE-NQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALR 542



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 146/374 (39%), Gaps = 86/374 (22%)

Query: 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRT 261
           +N+   N  I   CIV  A ILFC              A   YDA+          I R 
Sbjct: 1   MNRNGFNHTIESYCIV--AHILFC--------------ARMYYDANS---------ILRE 35

Query: 262 IIDVCGICGDYMKSRAIYEDLRS-QNVTLNIY-VFNSLMNV--NAHDLKFTLEVYKNMQK 317
           I+    +    ++   ++++L S +NV +  + VF++L +V  +   L+   + +  M++
Sbjct: 36  IV----LSKAELEECDVFDELWSTRNVCVPGFGVFDALFSVLIDLGMLEEATQCFSKMKR 91

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
             V     S N LL      G T   +  +   K +   G  K  VFTY+ ++       
Sbjct: 92  FRVFPKTRSCNGLLHKFAKLGKTDGVKRFF---KDMIGAGS-KPTVFTYNIMIDCMWKEG 147

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
             + A  + E+M   G+ P+T+T++S+I+     G ++  ++ FEEM    CEP+    N
Sbjct: 148 DIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYN 207

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
            L+    ++ +  +    +R                                        
Sbjct: 208 SLINCFCKSGKLPKGLEFYREM-------------------------------------- 229

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
                    K+   KP   +Y+ L+ A C +    +A+    +MR VG  PN  ++T L+
Sbjct: 230 ---------KQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLV 280

Query: 556 DACGGSGNVEGALQ 569
           DA    GN+  A +
Sbjct: 281 DANCKIGNLSDAFR 294



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 112/224 (50%), Gaps = 7/224 (3%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +++  ++P   + + + +  +GK   L   +  ++  K     P++    ++I+     G
Sbjct: 159 MKFRGLIPDT-VTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSG 217

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYN 328
              K    Y +++   +  N+  +++L++    +  ++  ++ Y +M+++G + +  +Y 
Sbjct: 218 KLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYT 277

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            L+ A C  GN   A  +  E+  LE    ++ +V TY+ ++    DA+  + A K+   
Sbjct: 278 SLVDANCKIGNLSDAFRLANEM--LEVG--VEWNVVTYTALIDGLCDAERMKEAEKLFGK 333

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           M++AGV PN  ++++LI+    A  +++A+ L  E+   G +P+
Sbjct: 334 MVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPD 377



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 80/169 (47%), Gaps = 13/169 (7%)

Query: 261 TIIDVC----GICGDYMKSRAI-YEDLRSQNVTL--NIYVFNSLMN--VNAHDLKFTLEV 311
           T++  C    G+C + + S+AI Y    S +  L  N  V+ ++++     + +K    +
Sbjct: 447 TVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTL 506

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M + G++ D  +Y  L+      GN + A  +  ++    A+  +KLD+  Y+++V 
Sbjct: 507 FEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKM----AEIGMKLDLLAYTSLVW 562

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            F+     Q A    E+M+   + P+ +    ++      G +++A+ L
Sbjct: 563 GFSQCNQLQKARSFLEEMIGEEILPDEVLCIGVLKKHYELGCIDEAVGL 611


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 35/237 (14%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           PN Y+   +I +    G + K   +  +++   VT + +V+N ++N       L+     
Sbjct: 385 PNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIA 444

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY----------------------GE 349
           +  MQ  G+  D+ S+N L+ ACC AG  + A+++Y                      GE
Sbjct: 445 FFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGE 504

Query: 350 ----------VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
                     V+ + +KG+   +V TY+T+V V+A A+ +Q A++  + M   G+ P+  
Sbjct: 505 HKRWNDVNEMVEEMRSKGMFP-NVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPT 563

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            +S+L NA A  G+ EQ +H+ + M +   E N    N+L+ A   A +   AF +F
Sbjct: 564 AYSALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINAFSMAGRSQEAFAVF 620



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 157/375 (41%), Gaps = 38/375 (10%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC--GICGDYMKSRAIYEDLRS 284
            V  + + RD   AL      K     P++     +I  C  G+   Y   R +++++++
Sbjct: 182 LVGAYAQNRDYGKALETLSKMKTLGFPPDVVSYTHVIQACRHGVVDIYTGFR-LFQEMQA 240

Query: 285 QNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + V ++  V+N L+     AH     +   + +Q  G++AD  SY  L+ +    G T  
Sbjct: 241 EGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLGKHGRTAE 300

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A+ +  E+K    +  LK     Y+T++  ++     Q    VK  +   G++ N IT+ 
Sbjct: 301 AEALLEEMKWYGLRPNLK----AYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYC 356

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR----- 457
            LI+A A AGL+++   L++EM      PN+     ++    +  Q+ +  +L R     
Sbjct: 357 LLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQA 416

Query: 458 ------------------SWTLSKTQVALGEDYDGN--TDRISNMEHKDKQSITNTPNFV 497
                             +  L + ++A  +  DG    D +S     D       P   
Sbjct: 417 GVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEA 476

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILI 555
              +Y   +      PT  T+NI++        +  V  ++ EMR+ G+ PN +++T L+
Sbjct: 477 RKLYYKMVND--GCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLV 534

Query: 556 DACGGSGNVEGALQC 570
           D    +   + A++C
Sbjct: 535 DVYAQARLFQDAVEC 549



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 132/299 (44%), Gaps = 53/299 (17%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           ++ A + P A + +   +  FG+ R L  A  A+   +     P++    ++ID C   G
Sbjct: 413 MQQAGVTPDAHV-YNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAG 471

Query: 271 DYMKSRAIY-----------------------------------EDLRSQNVTLNIYVFN 295
             +++R +Y                                   E++RS+ +  N+  + 
Sbjct: 472 QPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYT 531

Query: 296 SLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           +L++V A    F   +E  + M++ G+     +Y+ L  A    G   + ++    ++ +
Sbjct: 532 TLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLG---MCEQTLHVLQTM 588

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
           E + + ++++   + ++  F+ A   Q A  V E +  AG+T + IT+++L+ A   A  
Sbjct: 589 EKENI-EINLAMLNLLINAFSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMKALIRAEK 647

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
           +++   +F+EM++AGC P+ +  ++L            AFR F+   LS    +  E+Y
Sbjct: 648 LDEVSGVFDEMIKAGCRPDGKAKDMLRS----------AFR-FKERELSPKDKSFAEEY 695


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 149/354 (42%), Gaps = 59/354 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + +   +    K R +  AL  +   K    SP ++   ++I   G+C    + ++ A+ 
Sbjct: 116 VTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQ--GLCNFSRWKEASALL 173

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE--VYKNMQKLGVMADMASYNILLKACCLA 337
            ++ S N+  N+  FN L++    + K      V K M ++GV  D+ +YN L+    + 
Sbjct: 174 NEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMW 233

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
              V A++++     +  KG  K DVF+YS ++  +  AK    A ++  +M+  G TPN
Sbjct: 234 TEVVEARKLF---DVMITKGC-KPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPN 289

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +++++LI+     G + +A  LF+ M   G  PN     ILL    +     +AFRLFR
Sbjct: 290 NVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFR 349

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
           +                                         S Y         KP    
Sbjct: 350 AM---------------------------------------QSTY--------LKPNLVM 362

Query: 518 YNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           YNIL+ A C   +    + L +E+  +GL PN   +T +I+     G ++ AL+
Sbjct: 363 YNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALE 416



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 150/350 (42%), Gaps = 47/350 (13%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
            P +    T+I+  G  G + ++  +++D+ ++    + Y + +++N      +      
Sbjct: 42  QPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAG 101

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++K M++ G   ++ +Y+ L+ + C       A +I+    +++AK +    +FTY++++
Sbjct: 102 LFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIF---SYMKAKDI-SPTIFTYTSLI 157

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +   +   W+ A  +  +M S  + PN +T++ L++     G V  A  + + M + G E
Sbjct: 158 QGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVE 217

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFR------------SWTLSKTQVALGEDYDGNTDR 478
           P+    N L+       +   A +LF             S+++        +  D     
Sbjct: 218 PDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQL 277

Query: 479 ISNMEHKDKQSITNTPNFVPNSHYSSF-----------DKRFSFK--------PTTTTYN 519
            + M H+      +TPN   N  Y++            + +  FK        P   TY 
Sbjct: 278 FNEMIHQG-----STPN---NVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYA 329

Query: 520 ILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           IL+   C   Y  KA  L   M++  L PN + + IL++A   SGN++ A
Sbjct: 330 ILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDA 379



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 91/190 (47%), Gaps = 6/190 (3%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           + +++R +++ + ++    +++ ++ L+N    A  +    +++  M   G   +  SYN
Sbjct: 235 EVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYN 294

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            L+   C  G    AQ+++   K++   G L  +++TY+ ++  F    +   A ++   
Sbjct: 295 TLIHGLCQLGRLREAQDLF---KNMHTNGNLP-NLYTYAILLDGFCKQGYLGKAFRLFRA 350

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M S  + PN + ++ L+NA   +G ++ A  LF E+   G +PN Q    ++    +   
Sbjct: 351 MQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGL 410

Query: 449 FDRAFRLFRS 458
            D A   FR+
Sbjct: 411 LDEALEAFRN 420



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 17/210 (8%)

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           T + ++  F   +   +   V    +  G+ P  +T+++LIN     G   QA+ LF++M
Sbjct: 12  TLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDM 71

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           +  GC+P+      ++    +  +   A  LF+    +  Q+        N    S + H
Sbjct: 72  VARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQL--------NVVTYSTLIH 123

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTV 542
               S+             S+ K     PT  TY  L++  C  + +    AL+NEM ++
Sbjct: 124 ----SLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSL 179

Query: 543 GLSPNHISWTILIDACGGSGNV---EGALQ 569
            + PN +++ +L+D     G V   EG L+
Sbjct: 180 NIMPNVVTFNVLVDTFCKEGKVLAAEGVLK 209



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 104/224 (46%), Gaps = 10/224 (4%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQNVTLNIYV 293
           ++V A + +D        P+++    +I+  G C      +++ ++ ++  Q  T N   
Sbjct: 235 EVVEARKLFDVMITKGCKPDVFSYSILIN--GYCKAKRIDEAKQLFNEMIHQGSTPNNVS 292

Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L++       L+   +++KNM   G + ++ +Y ILL   C  G    A  ++  ++
Sbjct: 293 YNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQ 352

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
                  LK ++  Y+ +V     +   + A ++  ++   G+ PN   ++++IN     
Sbjct: 353 ST----YLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKE 408

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           GL+++A+  F  M   GC P+    N++++  ++     RA  L
Sbjct: 409 GLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHL 452



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 106/261 (40%), Gaps = 34/261 (13%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGS---GFKLLKN--ECQRLLD---SGEVEMFVG 176
           +EG++    GVLK + E+GV P  +   S   G+ +     E ++L D   +   +  V 
Sbjct: 197 KEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVF 256

Query: 177 LMEVLEEFRLPVKELDEEFRIVQLCV------NKPDVNLAIRYACIVPR---ADILFCN- 226
              +L       K +DE  ++    +      N    N  I   C + R   A  LF N 
Sbjct: 257 SYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNM 316

Query: 227 --------------FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
                          +  F K+  L  A R + A +     PN+ +   +++     G+ 
Sbjct: 317 HTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNL 376

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNIL 330
             +R ++ +L    +  N+ ++ +++N    +  L   LE ++NM+  G   D  SYN++
Sbjct: 377 KDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVI 436

Query: 331 LKACCLAGNTVLAQEIYGEVK 351
           ++      +   A  + GE++
Sbjct: 437 IRGFLQHKDESRAVHLIGEMR 457


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 146/355 (41%), Gaps = 62/355 (17%)

Query: 217 VPRADILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
           VP A I++ + +R F   G+K D     + Y        SP++ +  T +D     G+  
Sbjct: 261 VPGA-IVYTSLIRSFFKCGRKED---GHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETE 316

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K RA++ ++ +     +   ++ L++  V A     T E++  M++ G + D  +YN ++
Sbjct: 317 KGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVI 376

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C +G    A ++  E+K    KG     V TY +++   A       A  + E+  S
Sbjct: 377 DGFCKSGKVNKAYQLLEEMK---VKG-HPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 432

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+  N + +SSLI+     G +++A  + EE++Q G  PN    N LL A V+A + + 
Sbjct: 433 NGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINE 492

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           A   F+S                                                K    
Sbjct: 493 ALICFQSM-----------------------------------------------KDLKC 505

Query: 512 KPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
            P   TY+IL+   C    + +      EM+ +GL PN I++T +I     +GN+
Sbjct: 506 PPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNI 560



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 106/227 (46%), Gaps = 6/227 (2%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P   + + + +    K   L  A   ++ +K +    N+ +  ++ID  G  G   ++  
Sbjct: 401 PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYL 460

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           I E+L  + +T N+Y +N L++  V A ++   L  +++M+ L    +  +Y+IL+   C
Sbjct: 461 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLC 520

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
                  A   + E++ L     LK +  TY+T++   A A     A  +     + G  
Sbjct: 521 RVRKFNKAFVFWQEMQKLG----LKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGI 576

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           P++ +++++I   ++A     A  LFEE    GC  +++ C +LL A
Sbjct: 577 PDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDA 623



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 7/182 (3%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACC 335
           I+E+++   V  N+  +N L+++   + K    LE+  +M++ G+  ++ + NI++   C
Sbjct: 147 IFEEMKRDAVP-NVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLC 205

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            A     A  I+   + ++ K V   +  T+S+++           A  + E ML  G  
Sbjct: 206 KAQKLEEACSIF---EGMDDK-VCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHV 261

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P  I ++SLI +    G  E    +++EM+  GC P+    N  +    +A + ++   L
Sbjct: 262 PGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRAL 321

Query: 456 FR 457
           FR
Sbjct: 322 FR 323



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKAC 334
           ++E L         Y +N+++       KF  E Y  +++    G +  + +YN +L   
Sbjct: 77  LFEQLEQNRKVPCAYAYNTMIMGYGSAGKFD-EAYGLLERQKAKGSIPSVIAYNCILTCL 135

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
                   A  I+ E+K          +V TY+ ++ +         AL++++DM  AG+
Sbjct: 136 GKKRRVEEALRIFEEMKRDAVP-----NVPTYNILIDMLCREGKLNAALEIRDDMERAGL 190

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PN +T + +I+    A  +E+A  +FE M    C PN+   + L+    +  + D A+ 
Sbjct: 191 FPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYS 250

Query: 455 LF 456
           L+
Sbjct: 251 LY 252


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 48/264 (18%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           ++ +YN LL A   AG    AQ ++ E+K  +       DV +YS ++     A  W+ A
Sbjct: 8   NVVTYNSLLNALAKAGQCEEAQLLFEELKAAK----WTPDVVSYSCLINSLGRAGKWEAA 63

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           L+V  +M + G  PN  T+++L++    AG  ++A+ L  EM   GC P+ +  N L+  
Sbjct: 64  LEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLIST 123

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
             +A +   AF LF                          E +++  + +T  F  NS  
Sbjct: 124 LGKAGRLSEAFTLF-------------------------AEMRERGCVPDT--FTYNSLI 156

Query: 503 SSFDK---------------RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
               K               R    P   TY+ L+     D   VKA  L  EM+  G  
Sbjct: 157 YGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRK 216

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
           P+ I++T L+DA G +G V+ AL+
Sbjct: 217 PDSITFTALMDALGKAGRVDDALE 240



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 149/376 (39%), Gaps = 33/376 (8%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I F   +   GK   +  AL   D  K+    P +     +I   G  GD +++  + ++
Sbjct: 220 ITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDE 279

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++      ++  ++ L+   + A  L    +V K M+K G   D  +YN L+     AG 
Sbjct: 280 MKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGL 339

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  ++  +K   +KG    DV TYST++     A   + A  + E+M S G+ P+  
Sbjct: 340 LNDAGRLFDRMK---SKGC-NPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLF 395

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+ S+I     AG V+ A  LF EM   G  P+    N  L +     +F  A ++F   
Sbjct: 396 TYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDM 455

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDK------------------------QSITNTPN 495
             S     +   YD     +S  +  D                         + +T+  N
Sbjct: 456 KESGLLPDVAT-YDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGN 514

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTI 553
                    F       P  ++YN L+ A        +A   + +++  G  P+ +S++ 
Sbjct: 515 VDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSS 574

Query: 554 LIDACGGSGNVEGALQ 569
           LI A G +G ++ A +
Sbjct: 575 LISALGQTGQIDTAFE 590



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 147/346 (42%), Gaps = 51/346 (14%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           + + +   GK      A+   +  ++H   P++    ++I   G  G+ +K+  ++++++
Sbjct: 152 YNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMK 211

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            +    +   F +LM+    A  +   LE+   M++ GV   + +YN L+      G+ V
Sbjct: 212 RRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLV 271

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  +  E+K    +   K DV TYS ++     A     A +V + M   G  P+TIT+
Sbjct: 272 EAYNLLDEMK----RNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITY 327

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           ++LIN    AGL+  A  LF+ M   GC P+    + L+ A  +A + + A  LF     
Sbjct: 328 NTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLF----- 382

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
                                  ++ +S+   P+             F++    T   +L
Sbjct: 383 -----------------------EEMESVGIQPDL------------FTYCSIIT---VL 404

Query: 522 MKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            KA   D      L +EMR  GLSP+ I++   +++ G  G  + A
Sbjct: 405 GKAGQVD--DADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEA 448



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 147/341 (43%), Gaps = 31/341 (9%)

Query: 249 KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLK 306
           K   SPN+    ++++     G   +++ ++E+L++   T ++  ++ L+N    A   +
Sbjct: 2   KGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWE 61

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             LEV   MQ  G   ++ +YN L+     AG    A  +  E++     G +  DV TY
Sbjct: 62  AALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRD---NGCVP-DVRTY 117

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + ++     A     A  +  +M   G  P+T T++SLI      G  ++AM L EEM +
Sbjct: 118 NCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMER 177

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFR----------SWTLSKTQVALGE--DYDG 474
            GC P+    + L+    +  +  +AF+LF+          S T +    ALG+    D 
Sbjct: 178 HGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDD 237

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSH---------YSSFD--KRFSFKPTTTTYNILMK 523
             + +  M+ +  +    T N +             Y+  D  KR   KP   TY+ L+ 
Sbjct: 238 ALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLIT 297

Query: 524 ACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSG 562
                    +A  ++ +M   G  P+ I++  LI+  G +G
Sbjct: 298 GLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAG 338



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 162/391 (41%), Gaps = 47/391 (12%)

Query: 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID 264
           PDV   + Y+C++              G+     +AL      +     PN++   T++D
Sbjct: 42  PDV---VSYSCLI-----------NSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVD 87

Query: 265 VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMA 322
             G  G + ++  +  ++R      ++  +N L++    A  L     ++  M++ G + 
Sbjct: 88  CLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVP 147

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D  +YN L+      G +  A E+   ++ +E  G    DV TYS+++           A
Sbjct: 148 DTFTYNSLIYGLGKVGRSQKAMEL---LEEMERHGC-PPDVMTYSSLITGLGKDGETVKA 203

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            K+ ++M   G  P++IT+++L++A   AG V+ A+ L +EM + G +P     N L+  
Sbjct: 204 FKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAG 263

Query: 443 CVEACQFDRAFRLFR------------SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
             +      A+ L              +++   T +      D     +  ME +     
Sbjct: 264 FGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPD 323

Query: 491 TNTPNFVPNSHYSS---------FDKRFS--FKPTTTTYNILMKACCTDYYRVKA---LM 536
           T T N + N    +         FD+  S    P   TY+ L+ A      RV++   L 
Sbjct: 324 TITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITA-LGKAARVESACVLF 382

Query: 537 NEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            EM +VG+ P+  ++  +I   G +G V+ A
Sbjct: 383 EEMESVGIQPDLFTYCSIITVLGKAGQVDDA 413



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 135/321 (42%), Gaps = 29/321 (9%)

Query: 120 IVKSIREGRIDCVVGVLKKLNELGVAPLE-----LFDGSGFKLLKNECQRLLDSGEVEMF 174
           I   I+  ++D    VLKK+ + G  P       L +G G   L N+  RL D  + +  
Sbjct: 296 ITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSK-- 353

Query: 175 VGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL-FCNFVREFGK 233
            G    +  +   +  L +  R+   CV      L      +  + D+  +C+ +   GK
Sbjct: 354 -GCNPDVVTYSTLITALGKAARVESACV------LFEEMESVGIQPDLFTYCSIITVLGK 406

Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
              +  A R +   +    SP++      ++  G  G + ++R I+ED++   +  ++  
Sbjct: 407 AGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVAT 466

Query: 294 FNSLMNVNAHDLKFTLEV------YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +++L+      L  T EV       K + + G   D   ++  L+     GN   A E+ 
Sbjct: 467 YDALL----LGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHEL- 521

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             ++   +KG+      +Y+ ++   A A     A    ED+   G  P+ +++SSLI+A
Sbjct: 522 --LQFANSKGLWP-GASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISA 578

Query: 408 CANAGLVEQAMHLFEEMLQAG 428
               G ++ A  L EEM + G
Sbjct: 579 LGQTGQIDTAFELLEEMSKRG 599


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 143/343 (41%), Gaps = 50/343 (14%)

Query: 243 AYDASKKHLSSPNM--YICRTIIDVCGICGDYMK--------SRAIYEDLRSQNVTLNIY 292
           AY   KK +   +M  Y+   I+ +  ICGD           +   Y ++ +  V LN  
Sbjct: 391 AYKLLKKMVKCGHMPGYVVYNIL-IGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKI 449

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
             +S      +A   +    V + M   G + D ++Y+ +L   C A    LA  ++ E+
Sbjct: 450 NVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM 509

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K    +G L  DV+TY+ +V  F  A   + A K   +M   G TPN +T+++LI+A   
Sbjct: 510 K----RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
           A  V  A  LFE ML  GC PN    + L+    +A Q ++A ++F     SK       
Sbjct: 566 AKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK------- 618

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
                                + P+   + ++  +D   S +P   TY  L+   C  + 
Sbjct: 619 ---------------------DVPDV--DMYFKQYDDN-SERPNVVTYGALLDGFCKSHR 654

Query: 531 --RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
               + L++ M   G  PN I +  LID     G ++ A + +
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 150/346 (43%), Gaps = 53/346 (15%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
           G Y K+ ++  ++  Q    +   ++ ++N   NA  ++    +++ M++ G++AD+ +Y
Sbjct: 462 GKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTY 521

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            I++ + C AG    A++ + E++ +        +V TY+ ++  +  AK    A ++ E
Sbjct: 522 TIMVDSFCKAGLIEQARKWFNEMREVGCTP----NVVTYTALIHAYLKAKKVSYANELFE 577

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-----------NSQCC 436
            MLS G  PN +T+S+LI+    AG VE+A  +FE M  +   P           NS+  
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERP 637

Query: 437 NI-----LLQACVEACQFDRAFRLFRSWTLS---KTQVALGEDYDGNTDRISNMEHKDKQ 488
           N+     LL    ++ + + A +L  + ++      Q+      DG   ++  ++   + 
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLC-KVGKLDEAQEV 696

Query: 489 SITNTPNFVPNSHY---SSFDKRFSFK------------------PTTTTYNILMKACC- 526
               + +  P + Y   S  D+ F  K                  P    Y  ++   C 
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756

Query: 527 ---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              TD      LM  M   G  PN +++T +ID  G  G +E  L+
Sbjct: 757 VGKTD--EAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLE 800



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 18/238 (7%)

Query: 199 QLCVNK--PDVNLAIR-YACIVPRADIL-FCNFVREFGKKRDLVSALRAYDASKKHLSSP 254
           ++C +K  PDV++  + Y     R +++ +   +  F K   +  A +  DA       P
Sbjct: 613 RMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEP 672

Query: 255 NMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFT 308
           N  +   +ID  G+C  G   +++ +  ++        +Y ++SL++    V   DL   
Sbjct: 673 NQIVYDALID--GLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDL--A 728

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            +V   M +     ++  Y  ++   C  G T    E Y  ++ +E KG  + +V TY+ 
Sbjct: 729 SKVLSKMLENSCAPNVVIYTEMIDGLCKVGKT---DEAYKLMQMMEEKGC-QPNVVTYTA 784

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           ++  F      +  L++ E M S GV PN +T+  LI+ C   G ++ A +L EEM Q
Sbjct: 785 MIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQ 842



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 124/286 (43%), Gaps = 59/286 (20%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           K++DL S  +      ++  +PN+ I   +ID  G+C  G   ++  + + +  +    N
Sbjct: 723 KRQDLAS--KVLSKMLENSCAPNVVIYTEMID--GLCKVGKTDEAYKLMQMMEEKGCQPN 778

Query: 291 IYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           +  + ++++       ++  LE+ + M   GV  +  +Y +L+  CC  G   +A  +  
Sbjct: 779 VVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838

Query: 349 EVKH---------------------LEAKGVL----KLDVFTYSTIVKVFAD----AKWW 379
           E+K                      +E+ G+L    + D   + ++ ++  D    A+  
Sbjct: 839 EMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRL 898

Query: 380 QMALKVKEDM--LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
           +MAL++ E++   SA +   + T++SLI +   A  VE A  LF EM + G  P  Q   
Sbjct: 899 EMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFC 958

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
            L++             LFR+  +S+  + L        D IS+ME
Sbjct: 959 SLIKG------------LFRNSKISEALLLL--------DFISHME 984



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 13/148 (8%)

Query: 315 MQKLGVMADM------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +++LG + D       ++YN L++A   A     A  I+ E+    +   L++D FT   
Sbjct: 220 LEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREM----SLANLRMDGFTLRC 275

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
                     W+ AL + E   +    P+T+ ++ LI+    A L E+AM     M    
Sbjct: 276 FAYSLCKVGKWREALTLVE---TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATS 332

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
           C PN    + LL  C+   Q  R  R+ 
Sbjct: 333 CLPNVVTYSTLLCGCLNKKQLGRCKRVL 360



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 31/237 (13%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D   Y+ ++    +A  ++ A+     M +    PN +T+S+L+  C N   + +   + 
Sbjct: 301 DTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVL 360

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT-------QVALGE---D 471
             M+  GC P+ +  N L+ A   +     A++L +               + +G    D
Sbjct: 361 NMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGD 420

Query: 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF----------DKRFS---------FK 512
            D     + ++  K    +      +   + SSF          +K FS         F 
Sbjct: 421 KDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFI 480

Query: 513 PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           P T+TY+ ++   C       A  L  EM+  GL  +  ++TI++D+   +G +E A
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 73/204 (35%), Gaps = 41/204 (20%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  + +L++    +H ++   ++   M   G   +   Y+ L+   C  G    AQE+ 
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS---------------- 391
            E+        L    +TYS+++  +   K   +A KV   ML                 
Sbjct: 698 TEMSEHGFPATL----YTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDG 753

Query: 392 -------------------AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                               G  PN +T++++I+     G +E  + L E M   G  PN
Sbjct: 754 LCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPN 813

Query: 433 SQCCNILLQACVEACQFDRAFRLF 456
                +L+  C +    D A  L 
Sbjct: 814 YVTYRVLIDHCCKNGALDVAHNLL 837


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 143/343 (41%), Gaps = 50/343 (14%)

Query: 243 AYDASKKHLSSPNM--YICRTIIDVCGICGDYMK--------SRAIYEDLRSQNVTLNIY 292
           AY   KK +   +M  Y+   I+ +  ICGD           +   Y ++ +  V LN  
Sbjct: 350 AYKLLKKMVKCGHMPGYVVYNIL-IGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKI 408

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
             +S      +A   +    V + M   G + D ++Y+ +L   C A    LA  ++ E+
Sbjct: 409 NVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM 468

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K    +G L  DV+TY+ +V  F  A   + A K   +M   G TPN +T+++LI+A   
Sbjct: 469 K----RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 524

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
           A  V  A  LFE ML  GC PN    + L+    +A Q ++A ++F     SK       
Sbjct: 525 AKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK------- 577

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
                                + P+   + ++  +D   S +P   TY  L+   C  + 
Sbjct: 578 ---------------------DVPDV--DMYFKQYDDN-SERPNVVTYGALLDGFCKSHR 613

Query: 531 --RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
               + L++ M   G  PN I +  LID     G ++ A + +
Sbjct: 614 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 656



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 150/346 (43%), Gaps = 53/346 (15%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
           G Y K+ ++  ++  Q    +   ++ ++N   NA  ++    +++ M++ G++AD+ +Y
Sbjct: 421 GKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTY 480

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            I++ + C AG    A++ + E++ +        +V TY+ ++  +  AK    A ++ E
Sbjct: 481 TIMVDSFCKAGLIEQARKWFNEMREVGCTP----NVVTYTALIHAYLKAKKVSYANELFE 536

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-----------NSQCC 436
            MLS G  PN +T+S+LI+    AG VE+A  +FE M  +   P           NS+  
Sbjct: 537 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERP 596

Query: 437 NI-----LLQACVEACQFDRAFRLFRSWTLS---KTQVALGEDYDGNTDRISNMEHKDKQ 488
           N+     LL    ++ + + A +L  + ++      Q+      DG   ++  ++   + 
Sbjct: 597 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLC-KVGKLDEAQEV 655

Query: 489 SITNTPNFVPNSHY---SSFDKRFSFK------------------PTTTTYNILMKACC- 526
               + +  P + Y   S  D+ F  K                  P    Y  ++   C 
Sbjct: 656 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 715

Query: 527 ---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              TD      LM  M   G  PN +++T +ID  G  G +E  L+
Sbjct: 716 VGKTD--EAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLE 759



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 18/238 (7%)

Query: 199 QLCVNK--PDVNLAIR-YACIVPRADIL-FCNFVREFGKKRDLVSALRAYDASKKHLSSP 254
           ++C +K  PDV++  + Y     R +++ +   +  F K   +  A +  DA       P
Sbjct: 572 RMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEP 631

Query: 255 NMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFT 308
           N  +   +ID  G+C  G   +++ +  ++        +Y ++SL++    V   DL   
Sbjct: 632 NQIVYDALID--GLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDL--A 687

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            +V   M +     ++  Y  ++   C  G T    E Y  ++ +E KG  + +V TY+ 
Sbjct: 688 SKVLSKMLENSCAPNVVIYTEMIDGLCKVGKT---DEAYKLMQMMEEKGC-QPNVVTYTA 743

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           ++  F      +  L++ E M S GV PN +T+  LI+ C   G ++ A +L EEM Q
Sbjct: 744 MIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQ 801



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 106/237 (44%), Gaps = 39/237 (16%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           K++DL S  +      ++  +PN+ I   +ID  G+C  G   ++  + + +  +    N
Sbjct: 682 KRQDLAS--KVLSKMLENSCAPNVVIYTEMID--GLCKVGKTDEAYKLMQMMEEKGCQPN 737

Query: 291 IYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           +  + ++++       ++  LE+ + M   GV  +  +Y +L+  CC  G   +A  +  
Sbjct: 738 VVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 797

Query: 349 EVKH---------------------LEAKGVL----KLDVFTYSTIVKVFAD----AKWW 379
           E+K                      +E+ G+L    + D   + ++ ++  D    A+  
Sbjct: 798 EMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRL 857

Query: 380 QMALKVKEDM--LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           +MAL++ E++   SA +   + T++SLI +   A  VE A  LF EM + G  P  Q
Sbjct: 858 EMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQ 914



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 95/254 (37%), Gaps = 63/254 (24%)

Query: 315 MQKLGVMADM------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +++LG + D       ++YN L++A   A     A  I+ E+    +   L++D FT   
Sbjct: 179 LEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREM----SLANLRMDGFTLRC 234

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
                     W+ AL + E   +    P+T+ ++ LI+    A L E+AM     M    
Sbjct: 235 FAYSLCKVGKWREALTLVE---TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATS 291

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           C PN    + LL  C                 L+K Q+       G   R+ NM   +  
Sbjct: 292 CLPNVVTYSTLLCGC-----------------LNKKQL-------GRCKRVLNMMMME-- 325

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
                                   P+   +N L+ A CT  D+     L+ +M   G  P
Sbjct: 326 ---------------------GCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMP 364

Query: 547 NHISWTILIDA-CG 559
            ++ + ILI + CG
Sbjct: 365 GYVVYNILIGSICG 378



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 73/204 (35%), Gaps = 41/204 (20%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  + +L++    +H ++   ++   M   G   +   Y+ L+   C  G    AQE+ 
Sbjct: 597 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 656

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS---------------- 391
            E+        L    +TYS+++  +   K   +A KV   ML                 
Sbjct: 657 TEMSEHGFPATL----YTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDG 712

Query: 392 -------------------AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                               G  PN +T++++I+     G +E  + L E M   G  PN
Sbjct: 713 LCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPN 772

Query: 433 SQCCNILLQACVEACQFDRAFRLF 456
                +L+  C +    D A  L 
Sbjct: 773 YVTYRVLIDHCCKNGALDVAHNLL 796


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 146/342 (42%), Gaps = 61/342 (17%)

Query: 237 LVSALRAYD-------ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           L+ A R YD       + +K  +  +  +  T+I + G      K+         +    
Sbjct: 4   LLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRP 63

Query: 290 NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
             Y ++S++ V     D++  L +YK M K   + D  ++NIL+ +   A     A  ++
Sbjct: 64  TAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVF 123

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
           G++  L     +  DV+TY+ +++           +K+ E M + G  PN  T+ S+++A
Sbjct: 124 GDMFKLN----VSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHA 179

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
             +AG V++A  +F++M+Q G +P++   NIL+ A  +  Q +RAF              
Sbjct: 180 FGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAF-------------- 225

Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
              D+ G +           +S TN   +  NS  SS  ++                   
Sbjct: 226 ---DFVGKS-----------RSFTNEVTY--NSLLSSLGRK------------------G 251

Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           D   +  L  +M+  GL  N +++ ILI+  G +G VE   Q
Sbjct: 252 DIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQ 293



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 10/241 (4%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           ++ + + +   G+K D+   +  +   K      N      +I+  G  G       +Y 
Sbjct: 237 EVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYL 296

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++   ++  +I   N++++    A  ++   E++++M+  G+ AD  +YNIL+     AG
Sbjct: 297 EMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAG 356

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM--ALKVKEDMLSAGVTP 396
               A  +  E   +E  G    ++ TY+T++  +   KW  +  A ++  +M   GV P
Sbjct: 357 KLDAAGALLLE---MEENGCAP-NIITYNTLISSYG--KWSNLSAATRLFLEMKERGVAP 410

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N +++SSLI     AG  + A+ LF EM   GC PN    N+L+   + A +F  A    
Sbjct: 411 NVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYL 470

Query: 457 R 457
           R
Sbjct: 471 R 471


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 150/326 (46%), Gaps = 41/326 (12%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P+ +  R++ID  G+C  G+  ++ A++ +   + +  N+ ++N+L+    N   +    
Sbjct: 354 PDQFTYRSLID--GLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAA 411

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   M + G++ ++ ++NIL+   C  G    A    G VK + +KG    D+FT++ +
Sbjct: 412 QLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDAD---GLVKVMISKGYFP-DIFTFNIL 467

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  ++     + AL++ + ML  GV P+  T++SL+N        E  M  ++ M++ GC
Sbjct: 468 IHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGC 527

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG---NTDRISNME 483
            PN    NILL++     + D A  L    ++ +++   V  G   DG   N D      
Sbjct: 528 APNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDL----- 582

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKR---FSFKPTTTTYNILMKACCT--DYYRVKALMNE 538
                          +  Y+ F K    +    +T TYNI++ A     +    + L  E
Sbjct: 583 ---------------DGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQE 627

Query: 539 MRTVGLSPNHISWTILIDACGGSGNV 564
           M    L P+  ++ +++D    +GNV
Sbjct: 628 MVDRCLGPDGYTYRLMVDGFCKTGNV 653



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 155/382 (40%), Gaps = 53/382 (13%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           F   +R   KK D+    +  D   K    PN++     I   G+C  G+   +  +   
Sbjct: 219 FNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQ--GLCQRGELDGAVRMVGC 276

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFT-LEVY-KNMQKLGVMADMASYNILLKACCLAGN 339
           L  Q    ++  +N+L+     + KF   EVY   M   G+  D  +YN L+   C  G 
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGM 336

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             LA+ I G+       G +  D FTY +++           AL +  + L  G+ PN I
Sbjct: 337 VQLAERIVGDAVF---NGFVP-DQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVI 392

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFRLFRS 458
            +++LI   +N G++ +A  L  EM + G  P  Q  NIL+   C   C  D       +
Sbjct: 393 LYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSD-------A 445

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT-------------PN-FVPNSHYSS 504
             L K  ++ G   D  T  I    +  +  + N              P+ +  NS  + 
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505

Query: 505 FDKRFSFK---------------PTTTTYNILMKACCTDYYR----VKALMNEMRTVGLS 545
             K   F+               P   T+NIL+++ C   YR       L+ EM+   ++
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCR--YRKLDEALGLLEEMKNKSVN 563

Query: 546 PNHISWTILIDACGGSGNVEGA 567
           P+ +++  LID    +G+++GA
Sbjct: 564 PDAVTFGTLIDGFCKNGDLDGA 585



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/335 (20%), Positives = 133/335 (39%), Gaps = 47/335 (14%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASY 327
           G   ++  ++E +   +    ++ +N++M+V      F    +VY  M+  G+  D+ S+
Sbjct: 90  GKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSF 149

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            I +K+ C       A  +   + ++ ++G  +++V  Y T+V  F +  +     ++  
Sbjct: 150 TIRMKSFCKTSRPHAALRL---LNNMSSQGC-EMNVVAYCTVVGGFYEENFKAEGYELFG 205

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            ML++GV+    T++ L+      G V++   L +++++ G  PN    N+ +Q   +  
Sbjct: 206 KMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRG 265

Query: 448 QFDRAFR-----------------------LFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           + D A R                       L ++    + +V LG        ++ N   
Sbjct: 266 ELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLG--------KMVNEGL 317

Query: 485 KDKQSITNT-------PNFVPNSHYSSFDKRFS-FKPTTTTYNILMKACC--TDYYRVKA 534
           +      NT          V  +     D  F+ F P   TY  L+   C   +  R  A
Sbjct: 318 EPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALA 377

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L NE    G+ PN I +  LI      G +  A Q
Sbjct: 378 LFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQ 412



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 7/160 (4%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQK-LGVMADMASYNILLKA 333
            + E++++++V  +   F +L++      DL     +++ M++   V +   +YNI++ A
Sbjct: 552 GLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHA 611

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
                N  +A++++ E+        L  D +TY  +V  F       +  K   +M+  G
Sbjct: 612 FTEKLNVTMAEKLFQEM----VDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENG 667

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
             P+  T   +IN       V +A  +   M+Q G  P +
Sbjct: 668 FIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEA 707



 Score = 42.4 bits (98), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 17/145 (11%)

Query: 305 LKFTLEVYKN-MQKLGVMADM-ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL--- 359
            K TL  Y++ ++KLG      A   +L+      GN +L     G +K+   KG +   
Sbjct: 36  FKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQEA 95

Query: 360 -----KLD-------VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
                ++D       VF+Y+ I+ V  D+ ++  A KV   M   G+TP+  +++  + +
Sbjct: 96  VNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKS 155

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPN 432
                    A+ L   M   GCE N
Sbjct: 156 FCKTSRPHAALRLLNNMSSQGCEMN 180


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 158/347 (45%), Gaps = 21/347 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
           F   +  +GK      A++ +++ K     PN+     +ID CG  G ++ +   I+E++
Sbjct: 225 FSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEM 284

Query: 283 RSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
               V  +   +NSL+ V +     +    ++  M   G+  D+ +YN LL A C  G  
Sbjct: 285 LRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQM 344

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
            LA EI  E   +  K +L  +V TYST+   +A A   + AL +  +M   G+  + ++
Sbjct: 345 DLAYEIMLE---MPGKKILP-NVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVS 400

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +++L++  A  G  E A+ + +EM  +G + +    N LL    +  +F+   R+F+   
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKE-- 458

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
           + K +V     +       + ++   K S+      V    +  F K+   K     Y+ 
Sbjct: 459 MKKDRV-----FPNLLTYSTLIDVYSKGSLYEEAMEV----FREF-KQAGLKADVVLYSE 508

Query: 521 LMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           L+ A C +     A  L++EM   G+ PN +++  +IDA G S   E
Sbjct: 509 LINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAE 555



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 42/233 (18%)

Query: 227 FVREFGKKRDLVSALRAYDAS--KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284
            +RE G + +   A+R +D +  ++   +    +   +I   G  G    ++ ++E   S
Sbjct: 156 LLRELGNRGECWKAIRCFDFALVREGRKNERGKLASAMISTLGRLGKVELAKGVFETALS 215

Query: 285 QNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           +     ++ F++L++       F   ++V+++M+  G+  ++ +YN ++ AC   G    
Sbjct: 216 EGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGG---- 271

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
                                  +  +V++F             E+ML  GV P+ IT++
Sbjct: 272 ---------------------VEFKRVVEIF-------------EEMLRNGVQPDRITYN 297

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           SL+  C+  GL E A +LF EM+  G + +    N LL A  +  Q D A+ +
Sbjct: 298 SLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEI 350



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL-VEQAMHLF 421
           VF +S ++  +  + ++  A+KV E M  +G+ PN +T++++I+AC   G+  ++ + +F
Sbjct: 222 VFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIF 281

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           EEML+ G +P+    N LL  C     ++ A  LF
Sbjct: 282 EEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLF 316



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 15/192 (7%)

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           ++A  V E  LS G       +S+LI+A   +G  ++A+ +FE M  +G +PN    N +
Sbjct: 204 ELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAV 263

Query: 440 LQACVE-ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           + AC +   +F R   +F     +  Q           DRI+        S         
Sbjct: 264 IDACGKGGVEFKRVVEIFEEMLRNGVQ----------PDRITYNSLLAVCSRGGLWEAAR 313

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILID 556
           N      D+         TYN L+ A C       A  +M EM    + PN ++++ + D
Sbjct: 314 NLFNEMIDR--GIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMAD 371

Query: 557 ACGGSGNVEGAL 568
               +G +E AL
Sbjct: 372 GYAKAGRLEDAL 383


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 143/343 (41%), Gaps = 50/343 (14%)

Query: 243 AYDASKKHLSSPNM--YICRTIIDVCGICGDYMK--------SRAIYEDLRSQNVTLNIY 292
           AY   KK +   +M  Y+   I+ +  ICGD           +   Y ++ +  V LN  
Sbjct: 391 AYKLLKKMVKCGHMPGYVVYNIL-IGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKI 449

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
             +S      +A   +    V + M   G + D ++Y+ +L   C A    LA  ++ E+
Sbjct: 450 NVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM 509

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K    +G L  DV+TY+ +V  F  A   + A K   +M   G TPN +T+++LI+A   
Sbjct: 510 K----RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
           A  V  A  LFE ML  GC PN    + L+    +A Q ++A ++F     SK       
Sbjct: 566 AKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK------- 618

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
                                + P+   + ++  +D   S +P   TY  L+   C  + 
Sbjct: 619 ---------------------DVPDV--DMYFKQYDDN-SERPNVVTYGALLDGFCKSHR 654

Query: 531 --RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
               + L++ M   G  PN I +  LID     G ++ A + +
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 150/346 (43%), Gaps = 53/346 (15%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
           G Y K+ ++  ++  Q    +   ++ ++N   NA  ++    +++ M++ G++AD+ +Y
Sbjct: 462 GKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTY 521

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            I++ + C AG    A++ + E++ +        +V TY+ ++  +  AK    A ++ E
Sbjct: 522 TIMVDSFCKAGLIEQARKWFNEMREVGCTP----NVVTYTALIHAYLKAKKVSYANELFE 577

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-----------NSQCC 436
            MLS G  PN +T+S+LI+    AG VE+A  +FE M  +   P           NS+  
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERP 637

Query: 437 NI-----LLQACVEACQFDRAFRLFRSWTLS---KTQVALGEDYDGNTDRISNMEHKDKQ 488
           N+     LL    ++ + + A +L  + ++      Q+      DG   ++  ++   + 
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLC-KVGKLDEAQEV 696

Query: 489 SITNTPNFVPNSHY---SSFDKRFSFK------------------PTTTTYNILMKACC- 526
               + +  P + Y   S  D+ F  K                  P    Y  ++   C 
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756

Query: 527 ---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              TD      LM  M   G  PN +++T +ID  G  G +E  L+
Sbjct: 757 VGKTD--EAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLE 800



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 18/238 (7%)

Query: 199 QLCVNK--PDVNLAIR-YACIVPRADIL-FCNFVREFGKKRDLVSALRAYDASKKHLSSP 254
           ++C +K  PDV++  + Y     R +++ +   +  F K   +  A +  DA       P
Sbjct: 613 RMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEP 672

Query: 255 NMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFT 308
           N  +   +ID  G+C  G   +++ +  ++        +Y ++SL++    V   DL   
Sbjct: 673 NQIVYDALID--GLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDL--A 728

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            +V   M +     ++  Y  ++   C  G T    E Y  ++ +E KG  + +V TY+ 
Sbjct: 729 SKVLSKMLENSCAPNVVIYTEMIDGLCKVGKT---DEAYKLMQMMEEKGC-QPNVVTYTA 784

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           ++  F      +  L++ E M S GV PN +T+  LI+ C   G ++ A +L EEM Q
Sbjct: 785 MIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQ 842



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 106/237 (44%), Gaps = 39/237 (16%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           K++DL S  +      ++  +PN+ I   +ID  G+C  G   ++  + + +  +    N
Sbjct: 723 KRQDLAS--KVLSKMLENSCAPNVVIYTEMID--GLCKVGKTDEAYKLMQMMEEKGCQPN 778

Query: 291 IYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           +  + ++++       ++  LE+ + M   GV  +  +Y +L+  CC  G   +A  +  
Sbjct: 779 VVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838

Query: 349 EVKH---------------------LEAKGVL----KLDVFTYSTIVKVFAD----AKWW 379
           E+K                      +E+ G+L    + D   + ++ ++  D    A+  
Sbjct: 839 EMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRL 898

Query: 380 QMALKVKEDM--LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           +MAL++ E++   SA +   + T++SLI +   A  VE A  LF EM + G  P  Q
Sbjct: 899 EMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQ 955



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 95/254 (37%), Gaps = 63/254 (24%)

Query: 315 MQKLGVMADM------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +++LG + D       ++YN L++A   A     A  I+ E+    +   L++D FT   
Sbjct: 220 LEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREM----SLANLRMDGFTLRC 275

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
                     W+ AL + E   +    P+T+ ++ LI+    A L E+AM     M    
Sbjct: 276 FAYSLCKVGKWREALTLVE---TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATS 332

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           C PN    + LL  C                 L+K Q+       G   R+ NM   +  
Sbjct: 333 CLPNVVTYSTLLCGC-----------------LNKKQL-------GRCKRVLNMMMME-- 366

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
                                   P+   +N L+ A CT  D+     L+ +M   G  P
Sbjct: 367 ---------------------GCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMP 405

Query: 547 NHISWTILIDA-CG 559
            ++ + ILI + CG
Sbjct: 406 GYVVYNILIGSICG 419



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 73/204 (35%), Gaps = 41/204 (20%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  + +L++    +H ++   ++   M   G   +   Y+ L+   C  G    AQE+ 
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS---------------- 391
            E+        L    +TYS+++  +   K   +A KV   ML                 
Sbjct: 698 TEMSEHGFPATL----YTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDG 753

Query: 392 -------------------AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                               G  PN +T++++I+     G +E  + L E M   G  PN
Sbjct: 754 LCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPN 813

Query: 433 SQCCNILLQACVEACQFDRAFRLF 456
                +L+  C +    D A  L 
Sbjct: 814 YVTYRVLIDHCCKNGALDVAHNLL 837


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 144/380 (37%), Gaps = 92/380 (24%)

Query: 224 FCNFVREFGKKRDLVSALRAYD-ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           F    REF  + D   ALR +    ++    P  +I   +I + G  G   K   I+ED+
Sbjct: 49  FSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDM 108

Query: 283 RSQNVTLNIYVFNSLMNVNAH--------------------------------------D 304
              +V  N+Y F +L+N                                          D
Sbjct: 109 PENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACSKGGLD 168

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            +  L ++  M+  G+  D+ +YN LL AC   G    A  ++   K +   GV+  D  
Sbjct: 169 WEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVF---KTMNESGVVA-DAV 224

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY ++V  FA +       ++  +M   G +P+   ++SLI A A+AG V  A  +F++M
Sbjct: 225 TYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQM 284

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
            + GC P+ +  + LL+       F++   LF                       S+M  
Sbjct: 285 QRGGCAPDVETYSTLLRIYGNQGCFEQVRSLF-----------------------SDM-- 319

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTV 542
                                 K  S  PT  TYN L++      Y  ++  L ++M   
Sbjct: 320 ----------------------KELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDS 357

Query: 543 GLSPNHISWTILIDACGGSG 562
           G+ P+  +++ L+  CG  G
Sbjct: 358 GVKPDDATYSALLSVCGRGG 377



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 260 RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQK 317
           ++++D         +   +  ++  +  + +I  +NSL+    +A ++     V+K MQ+
Sbjct: 227 KSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQR 286

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            G   D+ +Y+ LL+     G     + ++ ++K L         V TY+++++VF +  
Sbjct: 287 GGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPT----VATYNSLIQVFGEGG 342

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           ++Q ++ +  DM+ +GV P+  T+S+L++ C   GL  +A  + + ML     P+
Sbjct: 343 YFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPS 397



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 46/210 (21%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL-VEQA 417
           +K +V+ ++ ++  +     ++ +L +   M    V PN IT+++++NAC+  GL  E  
Sbjct: 113 VKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACSKGGLDWEGL 172

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
           ++LF +M   G +P+    N LL AC      ++A  +F++                   
Sbjct: 173 LNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKT------------------- 213

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN 537
                         N    V ++         ++K    T+     A      RV+ L+ 
Sbjct: 214 -------------MNESGVVADA--------VTYKSLVDTF-----AGSNQLGRVEELLR 247

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           EM   G SP+   +  LI+A   +GNV GA
Sbjct: 248 EMEDEGNSPDIAGYNSLIEAYADAGNVHGA 277



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           +P++    T++ + G  G + + R+++ D++  +    +  +NSL+ V      F  ++ 
Sbjct: 290 APDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESIN 349

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++ +M   GV  D A+Y+ LL  C   G T  A +I+  +   E+   L+      + ++
Sbjct: 350 LFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEAS----AGLI 405

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +     ++ AL     +  AG+ P    + +LI   A  GL  +A      M +AG +
Sbjct: 406 SSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQ 465

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476
                 N +++A  +    D A   F     S+ Q   G + D  T
Sbjct: 466 APVSSVNSVMEAYSKVGLHDEALEFF-----SELQQKEGSEVDERT 506


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 151/330 (45%), Gaps = 34/330 (10%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTL 309
           PN++    +I+     G   K+R + ED++    + N+  +N+L++    +  +   +  
Sbjct: 221 PNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKA 280

Query: 310 E-VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           + V K M +  V  ++ ++NIL+       N   + +++   K +  + V+  +V TY++
Sbjct: 281 DAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVF---KEMLDQDVIP-NVITYNS 336

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++    +      A+ +++ M+SAGV PN IT+ SLIN     G++++A+ +F+ +   G
Sbjct: 337 LINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQG 396

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD---GNTDRISNMEHK 485
             P ++  N+L+ A  +  + D  F L            +G  Y+       R  N+E  
Sbjct: 397 TRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGT-YNCLIAGLCRNGNIEAA 455

Query: 486 DK--QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRT 541
            K    +TN                    P   T++ILM+  C+     KA  L+ EM  
Sbjct: 456 KKLFDQLTNKG-----------------LPDLVTFHILMEGYCSRGESRKAAMLLKEMSK 498

Query: 542 VGLSPNHISWTILIDACGGSGNVEGALQCR 571
           +GL P H+++ I++      GN++ A   R
Sbjct: 499 MGLKPRHLTYNIMMKGYCKEGNLKAATNMR 528



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 135/331 (40%), Gaps = 39/331 (11%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN+     +ID      +   S  +++++  Q+V  N+  +NSL+N   N   +   + 
Sbjct: 293 SPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIG 352

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +   M   GV  ++ +Y+ L+   C  G    A +++  VK    +   ++    Y+ ++
Sbjct: 353 MRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRM----YNMLI 408

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +           +KE+M   G+ P+  T++ LI      G +E A  LF+++   G  
Sbjct: 409 DAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL- 467

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWT--------LSKTQVALGEDYDGNTDRISNM 482
           P+    +IL++      +  +A  L +  +        L+   +  G   +GN    +NM
Sbjct: 468 PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNM 527

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMR 540
                               +  +K    +    +YN+L++          A  L+NEM 
Sbjct: 528 R-------------------TQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEML 568

Query: 541 TVGLSPNHISWTILIDACGGSG---NVEGAL 568
             GL PN I++ I+ +     G   ++EG L
Sbjct: 569 EKGLVPNRITYEIVKEEMVDKGFVPDIEGHL 599


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 158/347 (45%), Gaps = 21/347 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
           F   +  +GK      A++ +++ K     PN+     +ID CG  G ++ +   I+E++
Sbjct: 225 FSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEM 284

Query: 283 RSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
               V  +   +NSL+ V +     +    ++  M   G+  D+ +YN LL A C  G  
Sbjct: 285 LRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQM 344

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
            LA EI  E   +  K +L  +V TYST+   +A A   + AL +  +M   G+  + ++
Sbjct: 345 DLAYEIMLE---MPGKKILP-NVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVS 400

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +++L++  A  G  E A+ + +EM  +G + +    N LL    +  +F+   R+F+   
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKE-- 458

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
           + K +V     +       + ++   K S+      V    +  F K+   K     Y+ 
Sbjct: 459 MKKDRV-----FPNLLTYSTLIDVYSKGSLYEEAMEV----FREF-KQAGLKADVVLYSE 508

Query: 521 LMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           L+ A C +     A  L++EM   G+ PN +++  +IDA G S   E
Sbjct: 509 LINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAE 555



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 42/233 (18%)

Query: 227 FVREFGKKRDLVSALRAYDAS--KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284
            +RE G + +   A+R +D +  ++   +    +   +I   G  G    ++ ++E   S
Sbjct: 156 LLRELGNRGECWKAIRCFDFALVREGRKNERGKLASAMISTLGRLGKVELAKGVFETALS 215

Query: 285 QNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           +     ++ F++L++       F   ++V+++M+  G+  ++ +YN ++ AC   G    
Sbjct: 216 EGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGG---- 271

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
                                  +  +V++F             E+ML  GV P+ IT++
Sbjct: 272 ---------------------VEFKRVVEIF-------------EEMLRNGVQPDRITYN 297

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           SL+  C+  GL E A +LF EM+  G + +    N LL A  +  Q D A+ +
Sbjct: 298 SLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEI 350



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL-VEQAMHLF 421
           VF +S ++  +  + ++  A+KV E M  +G+ PN +T++++I+AC   G+  ++ + +F
Sbjct: 222 VFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIF 281

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           EEML+ G +P+    N LL  C     ++ A  LF
Sbjct: 282 EEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLF 316



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 15/192 (7%)

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           ++A  V E  LS G       +S+LI+A   +G  ++A+ +FE M  +G +PN    N +
Sbjct: 204 ELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAV 263

Query: 440 LQACVE-ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           + AC +   +F R   +F     +  Q           DRI+        S         
Sbjct: 264 IDACGKGGVEFKRVVEIFEEMLRNGVQ----------PDRITYNSLLAVCSRGGLWEAAR 313

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILID 556
           N      D+         TYN L+ A C       A  +M EM    + PN ++++ + D
Sbjct: 314 NLFNEMIDR--GIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMAD 371

Query: 557 ACGGSGNVEGAL 568
               +G +E AL
Sbjct: 372 GYAKAGRLEDAL 383


>gi|302813971|ref|XP_002988670.1| hypothetical protein SELMODRAFT_128601 [Selaginella moellendorffii]
 gi|300143491|gb|EFJ10181.1| hypothetical protein SELMODRAFT_128601 [Selaginella moellendorffii]
          Length = 318

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 111/224 (49%), Gaps = 6/224 (2%)

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303
           ++  KK    P+     T+ID  G  G   ++  ++E+++ +NV L+  VFNSL+     
Sbjct: 67  FEGMKKLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLLRAVGT 126

Query: 304 DLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
             K +L   +++ MQ  G + D+ SYN+L       G     +++Y E+K    +  LK 
Sbjct: 127 SYKPSLVYNIFREMQYFGQVPDIWSYNLLFYGLARRGRRKRLRKVYREMK----RDGLKP 182

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D++TY+ I+    +A   + A    + +L  GV  N  TW++L+       ++E A  ++
Sbjct: 183 DIYTYTAIILCLGNAGRTKSAYNFMQGLLRKGVEVNVKTWNALLRGLTKEDVIEVAFSVY 242

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
            +M   G +P++   ++LL+  +      + +R+ R +  S+ +
Sbjct: 243 NDMKARGFKPDNTTYSLLLENSIALRDAKKVYRIQRDFKDSRLE 286



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 4/137 (2%)

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
           +++++SYNI++K   L  ++ L + +  +V H+     L  DV TY  IV     A   +
Sbjct: 6   ISNVSSYNIMIKN--LVKDSELTKSL--KVFHMFEADQLSPDVGTYHYIVSGLCKANKTK 61

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           MA    E M   G+ P+T+T+S++I+    AG V +A+ LFEEM +     +++  N LL
Sbjct: 62  MAAMYFEGMKKLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLL 121

Query: 441 QACVEACQFDRAFRLFR 457
           +A   + +    + +FR
Sbjct: 122 RAVGTSYKPSLVYNIFR 138



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 83/190 (43%), Gaps = 39/190 (20%)

Query: 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
           A+  K     ++ M+KLG++ D  +Y+ ++     AG    A +++ E+K    +  ++L
Sbjct: 57  ANKTKMAAMYFEGMKKLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMK----RKNVRL 112

Query: 362 DVFTYSTIVK-------------VFADAKW-------WQMAL---------------KVK 386
           D   ++++++             +F + ++       W   L               KV 
Sbjct: 113 DTRVFNSLLRAVGTSYKPSLVYNIFREMQYFGQVPDIWSYNLLFYGLARRGRRKRLRKVY 172

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
            +M   G+ P+  T++++I    NAG  + A +  + +L+ G E N +  N LL+   + 
Sbjct: 173 REMKRDGLKPDIYTYTAIILCLGNAGRTKSAYNFMQGLLRKGVEVNVKTWNALLRGLTKE 232

Query: 447 CQFDRAFRLF 456
              + AF ++
Sbjct: 233 DVIEVAFSVY 242


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 132/314 (42%), Gaps = 20/314 (6%)

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKN 314
           + C T+I  CG  G   ++R  +  L+S+      + +NSL+ V   A      L + K 
Sbjct: 281 FTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKE 340

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M+K     D+ +YN L+ A   AG     +E    +  +  KG++  +  TY+T++  + 
Sbjct: 341 MEKNNCPPDLVTYNELVAAYVRAG---FHEEGADFIDTMIRKGIMP-NAITYTTVINAYG 396

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            A     AL     M  +G  PN  T+++++        +E+ + +  +M   GC PNS 
Sbjct: 397 KAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSV 456

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             N +L  C          R+FR              ++ N D  + +     +  +   
Sbjct: 457 TWNTMLAMCGNKGMHKYVNRVFREMKSC--------GFEPNRDTFNALIGAYGRCGSQID 508

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWT 552
                  Y    K   F P  TTYN L+ A     D+   ++++ +M++ G  PN  S++
Sbjct: 509 VV---KMYEEMIKA-GFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYS 564

Query: 553 ILIDACGGSGNVEG 566
           ++++     GN  G
Sbjct: 565 LMLNCYAKGGNGRG 578



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 143/344 (41%), Gaps = 27/344 (7%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           VR  G++     ALR  D       S ++    TI+      G Y ++  ++E +R   +
Sbjct: 181 VRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGL 240

Query: 288 TLNIYVFNSLMNVNA---HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +  +  +N +++V           L +   M+  G+  D  + + ++ AC   G    A+
Sbjct: 241 SPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEAR 300

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           + +  +K   ++G +    FTY+++++VF  A  +  AL + ++M      P+ +T++ L
Sbjct: 301 KFFARLK---SEGYVA-GTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNEL 356

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK- 463
           + A   AG  E+     + M++ G  PN+     ++ A  +A + D+A   FR    S  
Sbjct: 357 VAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGC 416

Query: 464 -TQVALGEDYDGNTDRISNMEHK-DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
              V       G   + S +E   D      +    PNS                T+N +
Sbjct: 417 VPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNS---------------VTWNTM 461

Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
           +  C     +  V  +  EM++ G  PN  ++  LI A G  G+
Sbjct: 462 LAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGS 505



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 132/323 (40%), Gaps = 42/323 (13%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           PN     T+I+  G  G   K+ + +  ++      N+  +N+++ +      L+  +++
Sbjct: 383 PNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDM 442

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
             +M+  G   +  ++N +L  C   G       ++ E+K        + +  T++ ++ 
Sbjct: 443 LCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCG----FEPNRDTFNALIG 498

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +         +K+ E+M+ AG TP   T+++L+NA A  G  E A  +  +M   G +P
Sbjct: 499 AYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKP 558

Query: 432 NSQCCNILLQACVEACQFDRAF----------RLFRSWTLSKTQVALGEDYDGNTDRISN 481
           N    +++L  C       R             +F SW L +T V            ++N
Sbjct: 559 NETSYSLMLN-CYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLV------------LAN 605

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEM 539
            + +    +           +  F K   +KP    +N ++     +  Y R   ++  +
Sbjct: 606 FKRRALMGMERA--------FQEFCKH-GYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLI 656

Query: 540 RTVGLSPNHISWTILID--ACGG 560
           R  GL P+ +++  L+D  A GG
Sbjct: 657 RESGLQPDLVTYNSLMDMYARGG 679



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 82/165 (49%), Gaps = 6/165 (3%)

Query: 290 NIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           ++ +FNS++++ A +  +    E+ + +++ G+  D+ +YN L+      G     +EI 
Sbjct: 629 DLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEI- 687

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             +K ++  G  K D+ +Y+T++K F      Q A++   +M  +G+ P  +T+++ +  
Sbjct: 688 --LKGIQKSGG-KPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAG 744

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            +  G+  +   +   M+Q  C PN     I++    +  ++  A
Sbjct: 745 YSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEA 789



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 86/188 (45%), Gaps = 6/188 (3%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K+R L+   RA+    KH   P++ +  +++ +      Y ++  +   +R   +  ++ 
Sbjct: 607 KRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLV 666

Query: 293 VFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +NSLM++ A   +     E+ K +QK G   D+ SYN ++K  C  G   L QE    +
Sbjct: 667 TYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQG---LMQEAIRTL 723

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
             +   G+ +  + TY+T V  ++    +    +V   M+     PN +T+  +++    
Sbjct: 724 SEMTISGI-RPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCK 782

Query: 411 AGLVEQAM 418
               ++AM
Sbjct: 783 GKKYKEAM 790


>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 805

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 165/357 (46%), Gaps = 36/357 (10%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           ALR +D  ++   +P       ++DV G  G  + +  A+  D+R+  V  + +  ++++
Sbjct: 202 ALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPRVVALLADMRAAGVEPDGFTASTVI 261

Query: 299 NVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                D  +   +  +++++  G    + +YN LL+    AGN   A  +   ++ +E  
Sbjct: 262 AAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRV---LREMEDA 318

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  K D  TY+ +   +A A ++Q A K  + M+  G+ PNT T+++++ A  NAG V++
Sbjct: 319 GC-KPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDE 377

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS---------KTQVA 467
           A+ LF+ M + G  P +   N++L    +  +F     +    + S          T +A
Sbjct: 378 ALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLA 437

Query: 468 L-----GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH---------YSSFDKRFS--F 511
           +      E Y   T  +  M+    +   +T N +  ++         +  +D+  +  F
Sbjct: 438 VCGKRGMESY--VTRVLEGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGF 495

Query: 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
            P  TTYN L+       D+   ++++++M++ G  PN +S+++L+      GN  G
Sbjct: 496 APCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNAAG 552



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 127/307 (41%), Gaps = 56/307 (18%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQK 317
           T++      G Y ++  ++++LR + V      +N +++V           + +  +M+ 
Sbjct: 188 TVLHALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPRVVALLADMRA 247

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            GV  D  + + ++ A   AG   L  E     + L+A+G     V TY+ +++VF  A 
Sbjct: 248 AGVEPDGFTASTVIAA---AGRDGLVDEAVAFFEDLKARGHAPC-VVTYNALLQVFGKAG 303

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
            +  AL+V  +M  AG  P+ +T++ L  + A AG  ++A    + M+  G  PN+   N
Sbjct: 304 NYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYN 363

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
            ++ A   A + D A  LF                    DR+                  
Sbjct: 364 TIMTAYGNAGKVDEALALF--------------------DRM------------------ 385

Query: 498 PNSHYSSFDKRFSFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
                    K+  F P T TYN++  M    + +  +  ++ EM   G +PN ++W  L+
Sbjct: 386 ---------KKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLL 436

Query: 556 DACGGSG 562
             CG  G
Sbjct: 437 AVCGKRG 443



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 135/340 (39%), Gaps = 40/340 (11%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           PN +   TI+   G  G   ++ A+++ ++          +N ++ +     +F   LE+
Sbjct: 357 PNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEM 416

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M + G   +  ++N LL  C   G       +   +K  +    ++L   TY+T++ 
Sbjct: 417 LGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKSCK----VELCRDTYNTLIC 472

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +        A K+ ++M +AG  P   T+++L+N  +  G    A  +  +M   G +P
Sbjct: 473 AYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKP 532

Query: 432 NSQCCNILLQ--------ACVEACQFD-RAFRLFRSWTLSKTQVALG------EDYDGNT 476
           N    ++LLQ        A +EA + +     +F SW + +T V         E  +   
Sbjct: 533 NDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWVILRTLVIANFKCRRLEGIERAF 592

Query: 477 DRISNMEHKDKQSITNT--PNFVPNSHYSSFDKRF------SFKPTTTTYNILMK--ACC 526
             +    HK    I N+    +  N  YS   + F         P   TYN LM   A  
Sbjct: 593 QEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMYAKS 652

Query: 527 TDYYRVKALMNEMR---------TVGLSPNHISWTILIDA 557
            + +  + ++N +R            L P+ +S+  +I+ 
Sbjct: 653 NEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVING 692



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 96/185 (51%), Gaps = 7/185 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           P+  I RT++     C         +++++++    ++ + NS++++ A +  ++  +E+
Sbjct: 567 PSWVILRTLVIANFKCRRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEM 626

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-----LKLDVFTY 366
           ++++++LG+  D+ +YN L+     +     A++I   ++  +++       LK DV +Y
Sbjct: 627 FESIEQLGLSPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSY 686

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++  F      + A +V  +M++ GV P  IT+ +L+   A+  +  +A  +   M+Q
Sbjct: 687 NTVINGFCKEGLIKEAQRVLSEMIADGVAPCVITYHTLVGGYASREMFAEAREVVGYMIQ 746

Query: 427 AGCEP 431
              +P
Sbjct: 747 RKLKP 751



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 19/248 (7%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           I P   IL    +  F K R L    RA+   K     P++ I  +++ +    G Y K+
Sbjct: 565 IFPSWVILRTLVIANF-KCRRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKA 623

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL------------GVMAD 323
             ++E +    ++ ++  +NSLM++ A   +   E  K + +L             +  D
Sbjct: 624 MEMFESIEQLGLSPDLITYNSLMDMYAKSNE-PWEAEKILNRLRSSQSQQQQQQQQLKPD 682

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           + SYN ++   C  G    AQ +  E   + A GV    V TY T+V  +A  + +  A 
Sbjct: 683 VVSYNTVINGFCKEGLIKEAQRVLSE---MIADGVAPC-VITYHTLVGGYASREMFAEAR 738

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           +V   M+   + P  +T+  ++++   A   E A      + +A    + +     L A 
Sbjct: 739 EVVGYMIQRKLKPMELTYRRVVDSYCRAKRYEDARDFLAVVAEADTNSDEKLLGA-LTAR 797

Query: 444 VEACQFDR 451
           +E+ QF R
Sbjct: 798 IESAQFGR 805



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 70/352 (19%), Positives = 140/352 (39%), Gaps = 28/352 (7%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
            GKK    + L       +   +PN     T++ VCG  G       + E ++S  V L 
Sbjct: 404 LGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKSCKVELC 463

Query: 291 IYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
              +N+L+             ++Y  M   G    + +YN LL      G+   A+ I  
Sbjct: 464 RDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSI-- 521

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            V  ++++G  K +  +YS +++  A          +++++    + P+ +   +L+ A 
Sbjct: 522 -VSKMKSEG-FKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWVILRTLVIAN 579

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468
                +E     F+E+   G +P+    N +L    +   + +A  +F S      Q+ L
Sbjct: 580 FKCRRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESI----EQLGL 635

Query: 469 GEDYDGNTDRISNMEHKDKQSITNTP-------NFVPNSHYSSFDKRFSFKPTTTTYNIL 521
                 + D I+     D  + +N P       N + +S      ++   KP   +YN +
Sbjct: 636 ------SPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTV 689

Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           +   C +      + +++EM   G++P  I++  L+   GG  + E   + R
Sbjct: 690 INGFCKEGLIKEAQRVLSEMIADGVAPCVITYHTLV---GGYASREMFAEAR 738


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 170/390 (43%), Gaps = 48/390 (12%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKS 275
           V R+   +   +  +G+     ++L   +  K+   SPN+    T+I+ C     D+   
Sbjct: 179 VIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGL 238

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNV-NAHDLKFTLE-VYKNMQKLGVMADMASYNILLKA 333
             ++ ++R + V  ++  +N+L++   A  L    E V+K M + G++ ++ +Y+ +++ 
Sbjct: 239 LGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVET 298

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
               G     +++   +K +E++G L  D+ +Y+ +++  A     + A+ V + M +AG
Sbjct: 299 FGKLGKL---EKVAMLLKEMESEGYLP-DISSYNVLIEAHAKLGSIKEAMDVFKQMQAAG 354

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             PN  T+S L+N     G  +    LF +M ++  EP++   NIL++   E   F    
Sbjct: 355 CVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVV 414

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNME--------HKDKQSI---TNTPNFVPNSH- 501
            LF           + E+ D N +    +         H+D + I    N    VP+S  
Sbjct: 415 TLFHD--------LVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKA 466

Query: 502 YSSFDKRF-------------------SFKPTTTTYNILMKACCTD--YYRVKALMNEMR 540
           YS   + +                     K T  TYN L+        Y   +A+++ MR
Sbjct: 467 YSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMR 526

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQC 570
             G+S N  S++ +I+    SG  E A++ 
Sbjct: 527 EYGISRNAKSFSGIIEGYRQSGQYEEAIKA 556



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 162/358 (45%), Gaps = 28/358 (7%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           F    +EF  + D   +LR +   ++ +   PN +I   II + G  G   K   I++++
Sbjct: 115 FSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEM 174

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACC---LA 337
            SQ V  +++ + +L+N    + ++  +LE+ + M++  V  ++ +YN ++ AC    L 
Sbjct: 175 ASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLD 234

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
              +L   ++ E++H   +GV + D+ TY+T++   A       A  V + M+  G+ P 
Sbjct: 235 WEGLLG--LFAEMRH---EGV-QPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPE 288

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             T+S ++      G +E+   L +EM   G  P+    N+L++A  +      A  +F 
Sbjct: 289 ITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVF- 347

Query: 458 SWTLSKTQVALGEDYDGNTDRI-SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
                K   A G   + +T  I  N+  K  +       F+         K  S +P  T
Sbjct: 348 -----KQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQM-------KESSAEPDAT 395

Query: 517 TYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
           TYNIL++      Y   V  L +++    + PN  ++  L+ ACG  G  E A +  F
Sbjct: 396 TYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILF 453



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 91/205 (44%), Gaps = 6/205 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           PN      ++++ G  G Y   R ++  ++  +   +   +N L+ V       K  + +
Sbjct: 357 PNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTL 416

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           + ++    +  +M +Y  L+ AC   G    A++I   + H+  KG++      YS +++
Sbjct: 417 FHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKI---LFHMNGKGIVPSSK-AYSGLIE 472

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +  A  +  AL     M   G      T++SLI+  A  GL ++   +   M + G   
Sbjct: 473 AYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISR 532

Query: 432 NSQCCNILLQACVEACQFDRAFRLF 456
           N++  + +++   ++ Q++ A + F
Sbjct: 533 NAKSFSGIIEGYRQSGQYEEAIKAF 557



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 99/243 (40%), Gaps = 19/243 (7%)

Query: 206 DVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV 265
           DV   ++ A  VP A   +   +  +GK          +   K+  + P+      +I V
Sbjct: 345 DVFKQMQAAGCVPNAST-YSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRV 403

Query: 266 CGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL--------MNVNAHDLKFTLEVYKNMQK 317
            G  G + +   ++ DL  +N+  N+  +  L        ++ +A  + F      +M  
Sbjct: 404 FGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILF------HMNG 457

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            G++    +Y+ L++A    G   L  E       +   G  K  + TY++++  FA   
Sbjct: 458 KGIVPSSKAYSGLIEAY---GQAALYDEALVAFNTMNEVGS-KSTIDTYNSLIHTFARGG 513

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
            ++    +   M   G++ N  ++S +I     +G  E+A+  F EM +  CE + Q   
Sbjct: 514 LYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLE 573

Query: 438 ILL 440
            +L
Sbjct: 574 GVL 576



 Score = 42.7 bits (99), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 102/237 (43%), Gaps = 13/237 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           PNM     ++  CG  G +  ++ I   +  + +  +   ++ L+        +   L  
Sbjct: 427 PNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVA 486

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M ++G  + + +YN L+      G   L +E    +  +   G+ + +  ++S I++
Sbjct: 487 FNTMNEVGSKSTIDTYNSLIHTFARGG---LYKEFEAILSRMREYGISR-NAKSFSGIIE 542

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +  +  ++ A+K   +M       +  T   ++     AGLV+++   F E+  +G  P
Sbjct: 543 GYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILP 602

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA-----LGEDYDGNTDRISNME 483
           +  C  ++L    +  ++D A  L     + KT+V+     +G+   G+ D  SN +
Sbjct: 603 SVLCYCMMLAVYAKNGRWDDASELLDE--MIKTRVSSIHQVIGQMIKGDYDDDSNWQ 657


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 119/251 (47%), Gaps = 13/251 (5%)

Query: 212 RYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271
           RYA   P   + +   V    K + +  AL   +        P+ +I   ++   G+C +
Sbjct: 3   RYA---PPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLS--GLCQE 57

Query: 272 --YMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
               ++R ++E +  Q +  N+  +N+L+N    A  ++   E++K M   G +    SY
Sbjct: 58  EKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSY 117

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N L+   C   + V A++++ ++     +     +V TY+T++   + +   Q A +V +
Sbjct: 118 NTLIDGFCKKKDLVAAKDVFDKM----VRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLD 173

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            M+  GVTPN  T+S LI+       V++A  L E+M+  G  P     NILL +   A 
Sbjct: 174 GMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRAD 233

Query: 448 QFDRAFRLFRS 458
           + + AF+LFR 
Sbjct: 234 KLEDAFKLFRG 244


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 159/366 (43%), Gaps = 30/366 (8%)

Query: 214 AC-IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
           AC + P A    C  V+ F K  ++  AL   +   KH  SPN  I   I+D     GD+
Sbjct: 299 ACGLSPTAATYGC-IVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDF 357

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
             +  ++ED+ S  +  +I  +N L++    A  +   L V +N+Q   ++  + +Y  +
Sbjct: 358 TAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSI 417

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           L      G+   A E++  +K       L+  V +Y++++   A A+  + A  + ++ML
Sbjct: 418 LDGYVKGGHIQKALEVFDRIK----TAGLRPGVVSYNSLLSGLAKARQMENARLMLDEML 473

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
           + GV PN  ++++L    A AG VE+A  +F+ M +     +      LL+AC ++    
Sbjct: 474 ANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQ 533

Query: 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD----KQSITNTPNFVPNSHYSSFD 506
           RA  +F+  T          D     +RI+     D    K  ++   + + +       
Sbjct: 534 RAVEVFQQIT----------DAGLKHNRITYCTMLDGWARKGELSKARDLLKDM------ 577

Query: 507 KRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           ++  F   T  Y   +KAC    D   V   +  MR   L  N  ++T LI     + + 
Sbjct: 578 QKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADP 637

Query: 565 EGALQC 570
           + A+ C
Sbjct: 638 DQAISC 643



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 163/386 (42%), Gaps = 60/386 (15%)

Query: 228 VREFG-------KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           +RE+G       +  D V+A   ++A +     PN++I  ++I       D   + A  E
Sbjct: 131 LREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTE 190

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++ SQ + LN  VF S+++   +A + +     ++  +   ++     YN +++A C AG
Sbjct: 191 EMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAG 250

Query: 339 N-----TVLAQ---------------------EIYGEVK------HLEAKGVLKLDVFTY 366
           N      +LAQ                     EI  E K       L+A G L     TY
Sbjct: 251 NMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACG-LSPTAATY 309

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
             IVK+F  A     AL + E+M   GV+PN + ++ +++  A  G    A  ++E+M+ 
Sbjct: 310 GCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVS 369

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
           AG +P+    NIL+ A  +A + D+A  +  +   ++    + E Y    D      H  
Sbjct: 370 AGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTI-ETYTSILDGYVKGGHIQ 428

Query: 487 KQSITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTV 542
           K                 FD  K    +P   +YN L+   A        + +++EM   
Sbjct: 429 KA-------------LEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLAN 475

Query: 543 GLSPNHISWTILIDACGGSGNVEGAL 568
           G+ PN  S+T L +    +G+VE A 
Sbjct: 476 GVVPNERSYTALTEGYARAGDVEKAF 501



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 144/349 (41%), Gaps = 55/349 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           L+   +  F + RD    L  +   K    SP       I+ +    G+  K+  I E++
Sbjct: 273 LYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEM 332

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
               V+ N  ++  +M+  A    FT   +V+++M   G+  D+ +YNIL+ A C AG  
Sbjct: 333 DKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRM 392

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
               +  G +++++A  +L   + TY++I+  +      Q AL+V + + +AG+ P  ++
Sbjct: 393 ---DKALGVLENIQANRLLPT-IETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVS 448

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++SL++  A A  +E A  + +EML  G  PN +    L +    A   ++AF +F+   
Sbjct: 449 YNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQR-- 506

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
           + K  +A+                                                 Y  
Sbjct: 507 MKKENLAI---------------------------------------------DIVAYGA 521

Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           L+KACC      R   +  ++   GL  N I++  ++D     G +  A
Sbjct: 522 LLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKA 570



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 6/194 (3%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +R + +++ +  V  N   + +L      A D++    +++ M+K  +  D+ +Y  LLK
Sbjct: 465 ARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLK 524

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           ACC +G    A E++ ++        LK +  TY T++  +A       A  + +DM   
Sbjct: 525 ACCKSGAMQRAVEVFQQI----TDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKH 580

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G   +TI ++S I AC  +G  E+       M +   E N++    L+   + A   D+A
Sbjct: 581 GFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQA 640

Query: 453 FRLFRSWTLSKTQV 466
              +     S  Q+
Sbjct: 641 ISCYEQAKASGLQL 654


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 172/384 (44%), Gaps = 38/384 (9%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           IVP   +++   +  F K  ++ +A + +D  +K    P+ +I  T + +CG+C  G  M
Sbjct: 76  IVPDT-VVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPD-FIAYTAV-ICGLCRCGKMM 132

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           ++  ++  + S+ V  +   + +L++    + +++    ++  M + G+  ++ +Y  L 
Sbjct: 133 EADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALA 192

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C  G    A E+  E   +  KG L+L++ TY+++V     +   + A+K+ E+M  
Sbjct: 193 DGLCKLGQVDTANELLHE---MCGKG-LQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEV 248

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           AG+ P+TIT+++L++A    G + +A  L  EML  G +P     N+L+     +   + 
Sbjct: 249 AGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLED 308

Query: 452 AFRLFRSWTLSK-------------TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
             RL  +W L K              Q  +  +    T+    M  +     +NT N + 
Sbjct: 309 GERLL-AWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILI 367

Query: 499 NSHYSSFDKRFS-----------FKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLS 545
             H  + + + +           F  T ++YN  I            + L  EMR  G++
Sbjct: 368 KGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMA 427

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
            +   + + +D   G GN+E AL+
Sbjct: 428 ADAEIYNLFVDISYGEGNMETALE 451



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 135/328 (41%), Gaps = 42/328 (12%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS--LMNVNAHDLKFTLE 310
           +P++    T+I+   + G+  K   + ++++ + +  N+Y +NS  L+   +  +     
Sbjct: 7   APDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAER 66

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M   G++ D   Y  L+   C  GN   A +++ E++    K  +  D   Y+ ++
Sbjct: 67  VLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEME----KQRIVPDFIAYTAVI 122

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                      A KV   M S GV P+ +T+++LI+    +G +E+A  L  +M+Q+G  
Sbjct: 123 CGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLT 182

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN      L     +  Q D A  L                          M  K  Q  
Sbjct: 183 PNVVTYTALADGLCKLGQVDTANELLHE-----------------------MCGKGLQLN 219

Query: 491 TNTPNFVPNSHYSSFDKRFSFK-----------PTTTTYNILMKACCTDYYRVKA--LMN 537
             T N + N    S + R + K           P T T+  LM A C     VKA  L+ 
Sbjct: 220 ICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLR 279

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVE 565
           EM   GL P  I++ +L++    SG +E
Sbjct: 280 EMLDRGLQPTVITFNVLMNGFCMSGMLE 307



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 30/216 (13%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           DV +YST++  +      Q  LK+ ++M   G+ PN  T++S+I     +G V+ A  + 
Sbjct: 9   DVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVL 68

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD---- 477
            EM+  G  P++     L+    +      A++LF    + K ++    D+   T     
Sbjct: 69  REMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDE--MEKQRIV--PDFIAYTAVICG 124

Query: 478 --RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCTDYYRVK 533
             R   M   DK                 F+K FS   +P   TY  L+   C      K
Sbjct: 125 LCRCGKMMEADK----------------VFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEK 168

Query: 534 A--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           A  L N+M   GL+PN +++T L D     G V+ A
Sbjct: 169 AFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTA 204



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 6/145 (4%)

Query: 284 SQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            + +  N   +NSLM      ++++ T E+YK M   GVM D  +YNIL+K  C A N  
Sbjct: 318 EKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNM- 376

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
             +E +   K +  KG   L   +Y++I+K F   K    A ++ E+M   G+  +   +
Sbjct: 377 --KEAWFLHKEMAEKG-FNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIY 433

Query: 402 SSLINACANAGLVEQAMHLFEEMLQ 426
           +  ++     G +E A+ L +E ++
Sbjct: 434 NLFVDISYGEGNMETALELCDEAIE 458


>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic [Vitis vinifera]
          Length = 701

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 120/239 (50%), Gaps = 7/239 (2%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           D+ +   +  +G+  ++  AL+ YD ++      +     T+I + G+ G++     +YE
Sbjct: 246 DVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYE 305

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++++  V  N+ ++N+L++    A        +YK M   G+     +Y  LL+A    G
Sbjct: 306 EMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRA---YG 362

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTPN 397
               A++     K ++ KG L+L V  Y+T++ + AD  + + A  + EDM S+G   P+
Sbjct: 363 RARYAEDALIVYKEMKEKG-LELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPD 421

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           + T+SSLI   + +G V +A  +   ML+AG EPN      L+Q   +A + D   R F
Sbjct: 422 SWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTF 480



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 103/227 (45%), Gaps = 5/227 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   +R +G   +    L  Y+  K     PN+ I  T++D  G      +++ IY++
Sbjct: 282 VTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKE 341

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + +  +  +   + +L+     A   +  L VYK M++ G+   +  YN LL  C   G 
Sbjct: 342 MTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGY 401

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A  I+ ++K   + G    D +T+S+++ +++ +     A  +   ML AG  PN  
Sbjct: 402 TEEAAAIFEDMK---SSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIF 458

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
             +SLI     A   ++ +  F+ +L+    P+ + C  +L    ++
Sbjct: 459 VLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFCGCMLNVMTQS 505



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 156/338 (46%), Gaps = 37/338 (10%)

Query: 239 SALRAYDASKKHLSSPNMYICRTI-IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           +AL A+   +K L      I   + + V   C +  ++  +++++  + V  +   F+++
Sbjct: 158 TALLAFGFFRKRLKPSREVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTI 217

Query: 298 MN---VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           ++   V++   K  +E ++ M + G   D  +Y+ ++ A   AGN  +A ++Y   +  +
Sbjct: 218 ISCARVSSLPNK-AVEWFEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEK 276

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
                ++D  T+ST+++++  +  +   L V E+M + GV PN + +++L++A   A   
Sbjct: 277 ----WRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRP 332

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR---------SWTLSKTQ 465
            QA ++++EM   G +P+      LL+A   A   + A  +++         S  L  T 
Sbjct: 333 WQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTL 392

Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525
           +A+  D  G T+  + +     + + ++ N +P+S        ++F    T Y     +C
Sbjct: 393 LAMCADV-GYTEEAAAI----FEDMKSSGNCMPDS--------WTFSSLITIY-----SC 434

Query: 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
                  +A++N M   G  PN    T LI  C G  N
Sbjct: 435 SGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQ-CYGKAN 471



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 38/221 (17%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +V  Y+  +KVF   +    A K+ ++ML  GV P+ IT+S++I+    + L  +A+  F
Sbjct: 175 EVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWF 234

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-----RSWTLSKTQVA-------LG 469
           E+M + GC P+    + ++ A   A   D A +L+       W +     +       + 
Sbjct: 235 EKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMS 294

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CT 527
            ++DG  +    M                        K    KP    YN L+ A     
Sbjct: 295 GNFDGCLNVYEEM------------------------KALGVKPNLVIYNTLLDAMGRAK 330

Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             ++ K +  EM   GL P+  ++  L+ A G +   E AL
Sbjct: 331 RPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDAL 371


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 132/314 (42%), Gaps = 20/314 (6%)

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKN 314
           + C T+I  CG  G   ++R  +  L+S+      + +NSL+ V   A      L + K 
Sbjct: 281 FTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKE 340

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M+K     D+ +YN L+ A   AG     +E    +  +  KG++  +  TY+T++  + 
Sbjct: 341 MEKNNCPPDLVTYNELVAAYVRAG---FHEEGADFIDTMIRKGIMP-NAITYTTVINAYG 396

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            A     AL     M  +G  PN  T+++++        +E+ + +  +M   GC PNS 
Sbjct: 397 KAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSV 456

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             N +L  C          R+FR              ++ N D  + +     +  +   
Sbjct: 457 TWNTMLAMCGNKGMHKYVNRVFREMKSC--------GFEPNRDTFNALIGAYGRCGSQID 508

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWT 552
                  Y    K   F P  TTYN L+ A     D+   ++++ +M++ G  PN  S++
Sbjct: 509 VV---KMYEEMIKA-GFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYS 564

Query: 553 ILIDACGGSGNVEG 566
           ++++     GN  G
Sbjct: 565 LMLNCYAKGGNGRG 578



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 143/344 (41%), Gaps = 27/344 (7%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           VR  G++     ALR  D       S ++    TI+      G Y ++  ++E +R   +
Sbjct: 181 VRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGL 240

Query: 288 TLNIYVFNSLMNVNA---HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +  +  +N +++V           L +   M+  G+  D  + + ++ AC   G    A+
Sbjct: 241 SPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEAR 300

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           + +  +K   ++G +    FTY+++++VF  A  +  AL + ++M      P+ +T++ L
Sbjct: 301 KFFARLK---SEGYVA-GTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNEL 356

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK- 463
           + A   AG  E+     + M++ G  PN+     ++ A  +A + D+A   FR    S  
Sbjct: 357 VAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGC 416

Query: 464 -TQVALGEDYDGNTDRISNMEHK-DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
              V       G   + S +E   D      +    PNS                T+N +
Sbjct: 417 VPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNS---------------VTWNTM 461

Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
           +  C     +  V  +  EM++ G  PN  ++  LI A G  G+
Sbjct: 462 LAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGS 505



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 132/323 (40%), Gaps = 42/323 (13%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           PN     T+I+  G  G   K+ + +  ++      N+  +N+++ +      L+  +++
Sbjct: 383 PNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDM 442

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
             +M+  G   +  ++N +L  C   G       ++ E+K        + +  T++ ++ 
Sbjct: 443 LCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCG----FEPNRDTFNALIG 498

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +         +K+ E+M+ AG TP   T+++L+NA A  G  E A  +  +M   G +P
Sbjct: 499 AYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKP 558

Query: 432 NSQCCNILLQACVEACQFDRAF----------RLFRSWTLSKTQVALGEDYDGNTDRISN 481
           N    +++L  C       R             +F SW L +T V            ++N
Sbjct: 559 NETSYSLMLN-CYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLV------------LAN 605

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEM 539
            + +    +           +  F K   +KP    +N ++     +  Y R   ++  +
Sbjct: 606 FKRRALMGMERA--------FQEFCKH-GYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLI 656

Query: 540 RTVGLSPNHISWTILID--ACGG 560
           R  GL P+ +++  L+D  A GG
Sbjct: 657 RESGLQPDLVTYNSLMDMYARGG 679



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 82/165 (49%), Gaps = 6/165 (3%)

Query: 290 NIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           ++ +FNS++++ A +  +    E+ + +++ G+  D+ +YN L+      G     +EI 
Sbjct: 629 DLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEI- 687

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             +K ++  G  K D+ +Y+T++K F      Q A++   +M  +G+ P  +T+++ +  
Sbjct: 688 --LKGIQKSGG-KPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAG 744

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            +  G+  +   +   M+Q  C PN     I++    +  ++  A
Sbjct: 745 YSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEA 789



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 86/188 (45%), Gaps = 6/188 (3%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K+R L+   RA+    KH   P++ +  +++ +      Y ++  +   +R   +  ++ 
Sbjct: 607 KRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLV 666

Query: 293 VFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +NSLM++ A   +     E+ K +QK G   D+ SYN ++K  C  G   L QE    +
Sbjct: 667 TYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQG---LMQEAIRTL 723

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
             +   G+ +  + TY+T V  ++    +    +V   M+     PN +T+  +++    
Sbjct: 724 SEMTISGI-RPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCK 782

Query: 411 AGLVEQAM 418
               ++AM
Sbjct: 783 GKKYKEAM 790


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 161/349 (46%), Gaps = 36/349 (10%)

Query: 248 KKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD-- 304
           ++   +P +     ++DV G  G  + +  A+ +++R+  V  + +  ++++     D  
Sbjct: 200 RRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGL 259

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           +   +  +++++  G    + +YN LL+    AGN   A  +   +K +E  G  + D  
Sbjct: 260 VDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRV---LKEMEQDGC-QPDAV 315

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY+ +   +A A +++ A K  + M S G+ PN  T+++++ A  N G V++A+ LF++M
Sbjct: 316 TYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQM 375

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS---------KTQVAL-----GE 470
            ++GC PN    N +L    +  +F     +    + S          T +A+      E
Sbjct: 376 KKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGME 435

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK-----------PTTTTYN 519
           DY   T  +  M+    +   +T N +  ++     +  +FK           P  TTYN
Sbjct: 436 DY--VTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYN 493

Query: 520 ILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
            L+       D+   ++++++MRT G  PN  S+++L+      GN+ G
Sbjct: 494 ALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAG 542



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 151/335 (45%), Gaps = 39/335 (11%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           PN +   T++   G  G   ++ A+++ ++      N+  +N ++ +     +FT  LE+
Sbjct: 347 PNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEM 406

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M + G   +  ++N +L  C   G   +   +   ++ +++ GV +L   TY+T++ 
Sbjct: 407 LGEMSRSGCTPNRVTWNTMLAVC---GKRGMEDYVTRVLEGMKSCGV-ELSRDTYNTLIA 462

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +        A K+  +M SAG  P   T+++L+N  +  G    A  +  +M   G +P
Sbjct: 463 AYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKP 522

Query: 432 NSQCCNILLQ--------ACVEACQFD-RAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
           N Q  ++LLQ        A ++A + +     +F SW + +T V      +    R+  +
Sbjct: 523 NDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIA----NFKCRRLGGI 578

Query: 483 EH--KDKQSITNTPNFV----------PNSHYSS----FD--KRFSFKPTTTTYNILMK- 523
           E   ++ ++    P+ V           N  YS     FD  K+    P   TYN LM  
Sbjct: 579 EKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDM 638

Query: 524 -ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
            A C++ +  + ++N++++  + P+ +S+  +I+ 
Sbjct: 639 YAKCSESWEAEKILNQLKSSQVKPDVVSYNTVING 673



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 121/307 (39%), Gaps = 56/307 (18%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQK 317
           T++      G Y ++  ++ +LR Q V   +  +N +++V           + +   M+ 
Sbjct: 178 TVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRA 237

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            GV  D  + + ++ ACC  G   L  E     + L+A+G     V TY+ +++VF  A 
Sbjct: 238 AGVEPDDFTASTVIAACCRDG---LVDEAVAFFEDLKARGHTPC-VVTYNALLQVFGKAG 293

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
            +  AL+V ++M   G  P+ +T++ L    A AG  E+A    + M   G  PN+   N
Sbjct: 294 NYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYN 353

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
            ++ A     + D A  LF                    D++                  
Sbjct: 354 TVMTAYGNIGKVDEALALF--------------------DQM------------------ 375

Query: 498 PNSHYSSFDKRFSFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
                    K+    P   TYN +  M    + +  +  ++ EM   G +PN ++W  ++
Sbjct: 376 ---------KKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTML 426

Query: 556 DACGGSG 562
             CG  G
Sbjct: 427 AVCGKRG 433



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K R L    +A+   K    +P++ I  +++ +    G Y K   I++ ++   ++ ++ 
Sbjct: 571 KCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLI 630

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLG---VMADMASYNILLKACCLAGNTVLAQEIYGE 349
            +NSLM++ A     + E  K + +L    V  D+ SYN ++   C  G    AQ I  E
Sbjct: 631 TYNSLMDMYAK-CSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSE 689

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
              + A G+    V TY T+V  +A  + +  A +V   M+   + P  +T+  ++++  
Sbjct: 690 ---MIADGMAPC-VVTYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYC 745

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            A   E+A     E+ +     + +  +  L A +E  QF R
Sbjct: 746 KAKRFEEARSFLSEVSETDPNFDKKVLHT-LAAYIEDAQFGR 786



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 138/348 (39%), Gaps = 41/348 (11%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVT 288
            GKK      L       +   +PN     T++ VCG  G  DY+    + E ++S  V 
Sbjct: 394 LGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTR--VLEGMKSCGVE 451

Query: 289 LNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           L+   +N+L+         T   ++Y  M   G    + +YN LL      G+   AQ I
Sbjct: 452 LSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSI 511

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
              V  +  KG  K +  +YS +++ +A          +++++    V P+ +   +L+ 
Sbjct: 512 ---VSKMRTKG-FKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVI 567

Query: 407 A---CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           A   C   G +E+A   F+E+   G  P+    N +L    +   + +   +F S     
Sbjct: 568 ANFKCRRLGGIEKA---FQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSI---- 620

Query: 464 TQVALGED---YDGNTDRISN-MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
            Q  L  D   Y+   D  +   E  + + I N              K    KP   +YN
Sbjct: 621 KQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQ------------LKSSQVKPDVVSYN 668

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            ++   C        + +++EM   G++P  +++  L+   GG  ++E
Sbjct: 669 TVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLV---GGYASLE 713


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 170/390 (43%), Gaps = 48/390 (12%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKS 275
           V R+   +   +  +G+     ++L   +  K+   SPN+    T+I+ C     D+   
Sbjct: 179 VIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGL 238

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNV-NAHDLKFTLE-VYKNMQKLGVMADMASYNILLKA 333
             ++ ++R + V  ++  +N+L++   A  L    E V+K M + G++ ++ +Y+ +++ 
Sbjct: 239 LGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVET 298

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
               G     +++   +K +E++G L  D+ +Y+ +++  A     + A+ V + M +AG
Sbjct: 299 FGKLGKL---EKVAMLLKEMESEGYLP-DISSYNVLIEAHAKLGSIKEAMDVFKQMQAAG 354

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             PN  T+S L+N     G  +    LF +M ++  EP++   NIL++   E   F    
Sbjct: 355 CVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVV 414

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNME--------HKDKQSI---TNTPNFVPNSH- 501
            LF           + E+ D N +    +         H+D + I    N    VP+S  
Sbjct: 415 TLFHD--------LVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKA 466

Query: 502 YSSFDKRF-------------------SFKPTTTTYNILMKACCTD--YYRVKALMNEMR 540
           YS   + +                     K T  TYN L+        Y   +A+++ MR
Sbjct: 467 YSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMR 526

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQC 570
             G+S N  S++ +I+    SG  E A++ 
Sbjct: 527 EYGISRNAKSFSGIIEGYRQSGQYEEAIKA 556



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 162/358 (45%), Gaps = 28/358 (7%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           F    +EF  + D   +LR +   ++ +   PN +I   II + G  G   K   I++++
Sbjct: 115 FSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEM 174

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACC---LA 337
            SQ V  +++ + +L+N    + ++  +LE+ + M++  V  ++ +YN ++ AC    L 
Sbjct: 175 ASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLD 234

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
              +L   ++ E++H   +GV + D+ TY+T++   A       A  V + M+  G+ P 
Sbjct: 235 WEGLLG--LFAEMRH---EGV-QPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPE 288

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             T+S ++      G +E+   L +EM   G  P+    N+L++A  +      A  +F 
Sbjct: 289 ITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVF- 347

Query: 458 SWTLSKTQVALGEDYDGNTDRI-SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
                K   A G   + +T  I  N+  K  +       F+         K  S +P  T
Sbjct: 348 -----KQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQM-------KESSAEPDAT 395

Query: 517 TYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
           TYNIL++      Y   V  L +++    + PN  ++  L+ ACG  G  E A +  F
Sbjct: 396 TYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILF 453



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 91/205 (44%), Gaps = 6/205 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           PN      ++++ G  G Y   R ++  ++  +   +   +N L+ V       K  + +
Sbjct: 357 PNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTL 416

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           + ++    +  +M +Y  L+ AC   G    A++I   + H+  KG++      YS +++
Sbjct: 417 FHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKI---LFHMNGKGIVPSSK-AYSGLIE 472

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +  A  +  AL     M   G      T++SLI+  A  GL ++   +   M + G   
Sbjct: 473 AYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISR 532

Query: 432 NSQCCNILLQACVEACQFDRAFRLF 456
           N++  + +++   ++ Q++ A + F
Sbjct: 533 NAKSFSGIIEGYRQSGQYEEAIKAF 557



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 99/243 (40%), Gaps = 19/243 (7%)

Query: 206 DVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV 265
           DV   ++ A  VP A   +   +  +GK          +   K+  + P+      +I V
Sbjct: 345 DVFKQMQAAGCVPNAST-YSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRV 403

Query: 266 CGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL--------MNVNAHDLKFTLEVYKNMQK 317
            G  G + +   ++ DL  +N+  N+  +  L        ++ +A  + F      +M  
Sbjct: 404 FGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILF------HMNG 457

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            G++    +Y+ L++A    G   L  E       +   G  K  + TY++++  FA   
Sbjct: 458 KGIVPSSKAYSGLIEAY---GQAALYDEALVAFNTMNEVGS-KSTIDTYNSLIHTFARGG 513

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
            ++    +   M   G++ N  ++S +I     +G  E+A+  F EM +  CE + Q   
Sbjct: 514 LYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLE 573

Query: 438 ILL 440
            +L
Sbjct: 574 GVL 576



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 102/237 (43%), Gaps = 13/237 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           PNM     ++  CG  G +  ++ I   +  + +  +   ++ L+        +   L  
Sbjct: 427 PNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVA 486

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M ++G  + + +YN L+      G   L +E    +  +   G+ + +  ++S I++
Sbjct: 487 FNTMNEVGSKSTIDTYNSLIHTFARGG---LYKEFEAILSRMREYGISR-NAKSFSGIIE 542

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +  +  ++ A+K   +M       +  T   ++     AGLV+++   F E+  +G  P
Sbjct: 543 GYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILP 602

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA-----LGEDYDGNTDRISNME 483
           +  C  ++L    +  ++D A  L     + KT+V+     +G+   G+ D  SN +
Sbjct: 603 SVLCYCMMLAVYAKNGRWDDASELLDE--MIKTRVSSIHQVIGQMIKGDYDDDSNWQ 657


>gi|293333246|ref|NP_001169278.1| uncharacterized protein LOC100383141 [Zea mays]
 gi|224028343|gb|ACN33247.1| unknown [Zea mays]
          Length = 901

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 161/363 (44%), Gaps = 35/363 (9%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P+  + +   +  +GK   L +AL  +     H   P+ Y   T+I++ G  G+  ++  
Sbjct: 261 PKLVVTYNVLIDLYGKAGKLKNALDMFLDMPAHGVMPDTYTFNTLINIFGFSGNSAQAEV 320

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++  +  + V  +   +N +M V A   DL+  L+ Y  ++  G+  D  +Y ILL+  C
Sbjct: 321 LFASMVIRGVKPDTKTYNVMMTVFASIGDLEGVLKYYCQIRNAGLHPDAVTYRILLQVLC 380

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS----TIVKVFADAKWWQMALKVKEDMLS 391
                  A+++         +G+LK   F +      ++K++ D      A+   E    
Sbjct: 381 ERKMVHKAEDVI--------EGILKAGSFVHEQSLPVVMKMYVDLGLLDEAIAFFEKHCR 432

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G   ++  +S++++  A  GL E+A H+F      G E +    N++++A  +A Q+DR
Sbjct: 433 -GKGVSSKNFSAIMDVFAGRGLWEEAEHIFCSERGDGNEKDIVEYNVMIKAYGQAKQYDR 491

Query: 452 AFRLFRSWTLSKTQVALGE-DYDGNTDRIS--NMEHKDKQSITNTPNFVPNSHYSSFDKR 508
              LF S  + ++ V   E  Y+      S     H+ K+ +                K 
Sbjct: 492 VSSLFES--MEESGVPSDECTYNSLIQMFSFGGFPHRAKKLLGKM-------------KD 536

Query: 509 FSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
             F+P   TY+ ++++        +A  L NEM+  G+ PN I + ILID    +GNV+ 
Sbjct: 537 AGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASGVEPNVIVYGILIDMFAETGNVKE 596

Query: 567 ALQ 569
           AL 
Sbjct: 597 ALH 599



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 111/235 (47%), Gaps = 19/235 (8%)

Query: 249 KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF- 307
           K +SS N      I+DV    G + ++  I+   R      +I  +N ++       ++ 
Sbjct: 434 KGVSSKNF---SAIMDVFAGRGLWEEAEHIFCSERGDGNEKDIVEYNVMIKAYGQAKQYD 490

Query: 308 -TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
               ++++M++ GV +D  +YN L++     G    A+++ G++K        +    TY
Sbjct: 491 RVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHRAKKLLGKMK----DAGFEPKCETY 546

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           S I++ ++       A+ +  +M ++GV PN I +  LI+  A  G V++A+H    + Q
Sbjct: 547 SAIIRSYSRHCLVPEAIDLFNEMKASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQ 606

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
           +G  PN    +I+L + +      +A+  F SW  ++   +   D DG  D I++
Sbjct: 607 SGISPN----HIVLTSLI------KAYSKFNSWKEAQDLYSRMNDMDGGPDIIAS 651


>gi|414886512|tpg|DAA62526.1| TPA: hypothetical protein ZEAMMB73_338715 [Zea mays]
          Length = 901

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 161/363 (44%), Gaps = 35/363 (9%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P+  + +   +  +GK   L +AL  +     H   P+ Y   T+I++ G  G+  ++  
Sbjct: 261 PKLVVTYNVLIDLYGKAGKLKNALDMFLDMPAHGVMPDTYTFNTLINIFGFSGNSAQAEV 320

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++  +  + V  +   +N +M V A   DL+  L+ Y  ++  G+  D  +Y ILL+  C
Sbjct: 321 LFASMVIRGVKPDTKTYNVMMTVFASIGDLEGVLKYYCQIRNAGLHPDAVTYRILLQVLC 380

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS----TIVKVFADAKWWQMALKVKEDMLS 391
                  A+++         +G+LK   F +      ++K++ D      A+   E    
Sbjct: 381 ERKMVHKAEDV--------IEGILKAGSFVHEQSLPVVMKMYVDLGLLDEAIAFFEKHCR 432

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G   ++  +S++++  A  GL E+A H+F      G E +    N++++A  +A Q+DR
Sbjct: 433 -GKGVSSKNFSAIMDVFAGRGLWEEAEHIFCSERGDGNEKDIVEYNVMIKAYGQAKQYDR 491

Query: 452 AFRLFRSWTLSKTQVALGE-DYDGNTDRIS--NMEHKDKQSITNTPNFVPNSHYSSFDKR 508
              LF S  + ++ V   E  Y+      S     H+ K+ +                K 
Sbjct: 492 VSSLFES--MEESGVPSDECTYNSLIQMFSFGGFPHRAKKLLGKM-------------KD 536

Query: 509 FSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
             F+P   TY+ ++++        +A  L NEM+  G+ PN I + ILID    +GNV+ 
Sbjct: 537 AGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASGVEPNVIVYGILIDMFAETGNVKE 596

Query: 567 ALQ 569
           AL 
Sbjct: 597 ALH 599



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 111/235 (47%), Gaps = 19/235 (8%)

Query: 249 KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF- 307
           K +SS N      I+DV    G + ++  I+   R      +I  +N ++       ++ 
Sbjct: 434 KGVSSKNF---SAIMDVFAGRGLWEEAEHIFCSERGDGNEKDIVEYNVMIKAYGQAKQYD 490

Query: 308 -TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
               ++++M++ GV +D  +YN L++     G    A+++ G++K        +    TY
Sbjct: 491 RVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHRAKKLLGKMK----DAGFEPKCETY 546

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           S I++ ++       A+ +  +M ++GV PN I +  LI+  A  G V++A+H    + Q
Sbjct: 547 SAIIRSYSRHCLVPEAIDLFNEMKASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQ 606

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
           +G  PN    +I+L + +      +A+  F SW  ++   +   D DG  D I++
Sbjct: 607 SGISPN----HIVLTSLI------KAYSKFNSWKEAQDLYSRMNDMDGGPDIIAS 651


>gi|302809414|ref|XP_002986400.1| hypothetical protein SELMODRAFT_123901 [Selaginella moellendorffii]
 gi|300145936|gb|EFJ12609.1| hypothetical protein SELMODRAFT_123901 [Selaginella moellendorffii]
          Length = 318

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 111/224 (49%), Gaps = 6/224 (2%)

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303
           ++  KK    P+     T+ID  G  G   ++  ++E+++ +NV L+  VFNSL+     
Sbjct: 67  FEGMKKLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLLRAVGT 126

Query: 304 DLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
             K +L   +++ MQ  G + D+ SYN+L       G     +++Y E+K    +  LK 
Sbjct: 127 SYKPSLVYNIFREMQYFGHVPDIWSYNLLFYGLARRGRRKRLRKVYREMK----RDGLKP 182

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D++TY+ I+    +A   + A    + +L  GV  N  TW++L+       ++E A  ++
Sbjct: 183 DIYTYTAIILCLGNAGRTKSAYNFMQGLLRKGVEVNVKTWNALLRGLTKEDVIEVAFSVY 242

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
            +M   G +P++   ++LL+  +      + +R+ R +  S+ +
Sbjct: 243 NDMKARGFKPDNTTYSLLLENSIALRDAKKVYRIQRDFRDSRLE 286



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 4/137 (2%)

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
           +++++SYNI++K   L  ++ L + +  +V H+     L  DV TY  IV     A   +
Sbjct: 6   ISNVSSYNIMIKN--LVKDSELTKSL--KVFHMFETDQLSPDVGTYHYIVSGLCKANKTK 61

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           MA    E M   G+ P+T+T+S++I+    AG V +A+ LFEEM +     +++  N LL
Sbjct: 62  MAAMYFEGMKKLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLL 121

Query: 441 QACVEACQFDRAFRLFR 457
           +A   + +    + +FR
Sbjct: 122 RAVGTSYKPSLVYNIFR 138



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 83/190 (43%), Gaps = 39/190 (20%)

Query: 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
           A+  K     ++ M+KLG++ D  +Y+ ++     AG    A +++ E+K    +  ++L
Sbjct: 57  ANKTKMAAMYFEGMKKLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMK----RKNVRL 112

Query: 362 DVFTYSTIVK-------------VFADAKW-------WQMAL---------------KVK 386
           D   ++++++             +F + ++       W   L               KV 
Sbjct: 113 DTRVFNSLLRAVGTSYKPSLVYNIFREMQYFGHVPDIWSYNLLFYGLARRGRRKRLRKVY 172

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
            +M   G+ P+  T++++I    NAG  + A +  + +L+ G E N +  N LL+   + 
Sbjct: 173 REMKRDGLKPDIYTYTAIILCLGNAGRTKSAYNFMQGLLRKGVEVNVKTWNALLRGLTKE 232

Query: 447 CQFDRAFRLF 456
              + AF ++
Sbjct: 233 DVIEVAFSVY 242


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 126/284 (44%), Gaps = 20/284 (7%)

Query: 290  NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
            N++ F  L++    A D+    E+ K M + GV  ++  +N+++K  C A     A E++
Sbjct: 876  NMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELF 935

Query: 348  GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
               K +E  G    DVFTYSTIV     +     A ++ EDM+S G +PN +T+SSL++ 
Sbjct: 936  ---KEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHG 992

Query: 408  CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
               AG +++A  L + M ++GC PN    N ++    +  + D A+ L         Q  
Sbjct: 993  LCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPN 1052

Query: 468  LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
            +   Y    D       K + +I      V             + P   TYN L+   C 
Sbjct: 1053 V-VTYTVLLDAFCKC-GKAEDAIGLVEVMVEK----------GYVPNLFTYNSLLDMFCK 1100

Query: 528  --DYYRVKALMNEMRTVGLSPNHISW-TILIDACGGSGNVEGAL 568
              +  R   L++ M   G  PN +S+ T++   C  +   EG L
Sbjct: 1101 KDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVL 1144



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 151/358 (42%), Gaps = 24/358 (6%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P   + +   +    K   L  A+R  +    +  +PN++   T++   G C       A
Sbjct: 227 PPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLH--GFCKANRVENA 284

Query: 278 IY--EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           ++  E + ++    ++  + +++N       +     V   M + G   ++ +Y  L+  
Sbjct: 285 LWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDG 344

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C  G+   A E+   V+ +  +G  + +  TY+ I+ VF      + A +V + M+  G
Sbjct: 345 FCRVGDLDGAVEL---VRKMTERG-YRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTG 400

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             P+ I +S++I+    AG + +A  L E+M++ GC P+  C + L+ A  +A   D A 
Sbjct: 401 CPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQ 460

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
            L R        +++G D   +    S + H    ++           +     +    P
Sbjct: 461 ELLR--------MSIGMDCAPDVVAYSILIH----ALCKAKRLPEAESWLDVMVKNRCYP 508

Query: 514 TTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              TYN ++   C       A  L + MR  G+ P+ ++++I+I +     N++ A +
Sbjct: 509 DVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFK 566



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 107/504 (21%), Positives = 213/504 (42%), Gaps = 65/504 (12%)

Query: 74   YADMASKLAKDGRLEEFAMIVESVVVSEG---NVSKFASMLSLEMVASGIVKSIREGRID 130
            Y+ +   L K G++++   +VE +V S+G   NV  ++S+L       G+ K+   G++D
Sbjct: 951  YSTIVDSLVKSGKVDDACRLVEDMV-SKGCSPNVVTYSSLLH------GLCKA---GKLD 1000

Query: 131  CVVGVLKKLNELGVAPL-----ELFDG--------SGFKLLKNECQRLLDSGEVEMFVGL 177
                +L+++   G +P       + DG          + LL    + ++D G     V  
Sbjct: 1001 EATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLL----EEMVDGGCQPNVVTY 1056

Query: 178  MEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237
              +L+ F     + ++   +V++ V K  V     Y  ++     +FC       KK ++
Sbjct: 1057 TVLLDAF-CKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLD----MFC-------KKDEV 1104

Query: 238  VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY--EDLRSQNVTLNIYVFN 295
              A +   +  +    PN+    T+I   G+C        +   E + S N   +I  FN
Sbjct: 1105 ERACQLLSSMIQKGCVPNVVSYNTVI--AGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 1162

Query: 296  SLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
            ++++     + +    E++  +Q+ G   ++ +YN L+   C +     A+ +   ++ +
Sbjct: 1163 TIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL---LREM 1219

Query: 354  EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
              K     D+ TY+T++     +K    A K+   MLS G+ P+ +T+S +I++      
Sbjct: 1220 TRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRF 1279

Query: 414  VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
            +++A ++ E ML+ G +P +     L+    +    D+A  + +   LSK        + 
Sbjct: 1280 MDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQ-LLLSKGSYPDVVTFS 1338

Query: 474  GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK 533
               D +S    + +Q+       +          R    P T TYN L+K  C       
Sbjct: 1339 IFIDWLSK-RGRLRQAGELLETML----------RAGLVPDTVTYNTLLKGFCDASLTED 1387

Query: 534  A--LMNEMRTVGLSPNHISWTILI 555
            A  L   MR  G  P++ ++T L+
Sbjct: 1388 AVDLFEVMRQCGCEPDNATYTTLV 1411



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 112/267 (41%), Gaps = 58/267 (21%)

Query: 306  KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
            K  L+VY+N  KL    +M ++ IL+   C AG+   A E+   +K +   GV + +V  
Sbjct: 861  KDALQVYRN--KLCCSPNMFTFTILIHGLCRAGDIGTAYEL---LKEMPRHGVPQ-NVIL 914

Query: 366  YSTIVKVFADAKWWQMALKVKEDMLSAG-VTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            ++ ++K    A+    AL++ ++M  +G   P+  T+S+++++   +G V+ A  L E+M
Sbjct: 915  HNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDM 974

Query: 425  LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
            +  GC PN    + LL    +A + D A  L +  T                        
Sbjct: 975  VSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMT------------------------ 1010

Query: 485  KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA---LMNEMRT 541
                                   R    P   TYN ++   C    R+     L+ EM  
Sbjct: 1011 -----------------------RSGCSPNIVTYNTIIDGHCK-LGRIDEAYHLLEEMVD 1046

Query: 542  VGLSPNHISWTILIDACGGSGNVEGAL 568
             G  PN +++T+L+DA    G  E A+
Sbjct: 1047 GGCQPNVVTYTVLLDAFCKCGKAEDAI 1073



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 176/420 (41%), Gaps = 61/420 (14%)

Query: 57   TALLSTVRRDLSSRNDY-YADMASKLAKDGRLEEFAMIVESVVVS--EGNVSKFASMLSL 113
            TALL  + R   S N   Y  +     K GR++E   ++E +V    + NV  +  +L  
Sbjct: 1003 TALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLD- 1061

Query: 114  EMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL--KNECQR------- 164
                       + G+ +  +G+++ + E G  P      S   +   K+E +R       
Sbjct: 1062 --------AFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSS 1113

Query: 165  LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK--PDV---NLAIRYACIVPR 219
            ++  G V   V    V+       K  +    + Q+  N   PD+   N  I   C   R
Sbjct: 1114 MIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYR 1173

Query: 220  ADILF--CNFVREFGKKRDLVS---------ALRAYDA--------SKKHLSSPNMYICR 260
             DI +   N ++E G   +LV+           R +D         ++K   SP++    
Sbjct: 1174 VDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYN 1233

Query: 261  TIIDVCGICGDYMKSRA-------IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313
            T+ID  G+C      RA       + + L   +VT +I V +SL      D      V +
Sbjct: 1234 TVID--GLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSI-VISSLCKWRFMDEANN--VLE 1288

Query: 314  NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
             M K G      +Y  L+   C  GN   A EI   ++ L +KG    DV T+S  +   
Sbjct: 1289 LMLKNGFDPGAITYGTLIDGFCKTGNLDKALEI---LQLLLSKGSYP-DVVTFSIFIDWL 1344

Query: 374  ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
            +     + A ++ E ML AG+ P+T+T+++L+    +A L E A+ LFE M Q GCEP++
Sbjct: 1345 SKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDN 1404



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 4/147 (2%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M+  GVM D+ +Y+I++ + C   N   A ++   +K  EAK V   DV TYS ++
Sbjct: 532 LFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMK--EAKCVP--DVVTYSALI 587

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A     A  V ++ML  G  PN +T+++LI+       VEQA  + E M +  C 
Sbjct: 588 NGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCT 647

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFR 457
           P+S     L+     A + + A+R+ R
Sbjct: 648 PDSITYTCLINGLCNASRLEEAWRVLR 674



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 153/361 (42%), Gaps = 64/361 (17%)

Query: 253  SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310
            SPN+    +++   G+C  G   ++ A+ + +     + NI  +N++++ +   L    E
Sbjct: 980  SPNVVTYSSLLH--GLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCK-LGRIDE 1036

Query: 311  VYKNMQKL---GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
             Y  ++++   G   ++ +Y +LL A C  G    A++  G V+ +  KG +  ++FTY+
Sbjct: 1037 AYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK---AEDAIGLVEVMVEKGYVP-NLFTYN 1092

Query: 368  TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML-- 425
            +++ +F      + A ++   M+  G  PN ++++++I     A  V + + L E+ML  
Sbjct: 1093 SLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSN 1152

Query: 426  ---------------------------------QAGCEPNSQCCNILLQACVEACQFDRA 452
                                             ++GC PN    N L+    ++ +FD+A
Sbjct: 1153 NCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQA 1212

Query: 453  FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS-- 510
              L R  T  +        Y+   D +   +  D+              Y  F +  S  
Sbjct: 1213 EYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRA-------------YKLFLQMLSDG 1259

Query: 511  FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
              P   TY+I++ + C   +  +A  ++  M   G  P  I++  LID    +GN++ AL
Sbjct: 1260 LAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKAL 1319

Query: 569  Q 569
            +
Sbjct: 1320 E 1320



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 59/248 (23%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+ +YN ++   C +     A  ++  ++   A GV+  DV TYS ++  F        A
Sbjct: 509 DVVTYNSVVDGLCKSRRINDAFLLFDRMR---AAGVMP-DVVTYSIVIHSFCKDNNLDSA 564

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            K+ E M  A   P+ +T+S+LIN    AG V++A  +F+EML  GC PN    N L+  
Sbjct: 565 FKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDG 624

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
             +  + ++A  +                          +E   KQS T           
Sbjct: 625 LCKINKVEQAAEM--------------------------LEIMRKQSCT----------- 647

Query: 503 SSFDKRFSFKPTTTTYNILMKACCT-----DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
                     P + TY  L+   C      + +RV   + EM+  G  P+ +++  L+ A
Sbjct: 648 ----------PDSITYTCLINGLCNASRLEEAWRV---LREMKDKGCLPDRMTYGTLLRA 694

Query: 558 CGGSGNVE 565
              + N+E
Sbjct: 695 LQKTNNLE 702



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 18/224 (8%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI------YE 280
            +    K + L  A    D   K+   P++    +++D  G+C    KSR I      ++
Sbjct: 481 LIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVD--GLC----KSRRINDAFLLFD 534

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +R+  V  ++  ++ +++    D  L    ++ + M++   + D+ +Y+ L+   C AG
Sbjct: 535 RMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAG 594

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A +++ E+           ++ TY+T++         + A ++ E M     TP++
Sbjct: 595 TVDKAFDVFQEMLGCGCAP----NLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDS 650

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           IT++ LIN   NA  +E+A  +  EM   GC P+      LL+A
Sbjct: 651 ITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRA 694



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 123/309 (39%), Gaps = 42/309 (13%)

Query: 291 IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           I+  N L+NV   AH      +++++  +     D  +Y+ L+     AG  + A E++ 
Sbjct: 126 IFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFD 185

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA-LKVKEDMLSAGVTPNTITWSSLINA 407
           E+     KG LK     + +I++   DA     A L  +E  +S    P+++T++++IN 
Sbjct: 186 EMNR---KG-LKAHAGVHKSILRGLCDAGQCSDAVLHFRE--MSKTCPPDSVTYNTMING 239

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-------- 459
            + +  ++ A+ L EEM+  G  PN    N +L    +A + + A  L            
Sbjct: 240 LSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPD 299

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF---------- 509
            +S T V  G       D    +  K  Q     PN +    Y +    F          
Sbjct: 300 VVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQ-PNVIT---YGTLVDGFCRVGDLDGAV 355

Query: 510 ---------SFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
                     ++P   TYN +M   C   D  R   ++  M   G  P+ I+++ +I   
Sbjct: 356 ELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGF 415

Query: 559 GGSGNVEGA 567
             +G +  A
Sbjct: 416 CKAGKLREA 424



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 15/206 (7%)

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
           E +   + ++F  + ++ V   A  +  A  +    +      +T+T+S+LI+    AG 
Sbjct: 117 ETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGK 176

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
           +  A  LF+EM + G + ++     +L+   +A Q   A   FR   +SKT       Y+
Sbjct: 177 ILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFRE--MSKTCPPDSVTYN 234

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK 533
              + +S  +  D  +I      V N           F P   +YN ++   C       
Sbjct: 235 TMINGLSKSDRLD-DAIRLLEEMVDN----------GFAPNVFSYNTVLHGFCKANRVEN 283

Query: 534 A--LMNEMRTVGLSPNHISWTILIDA 557
           A  L+ +M T G  P+ +S+T +I+ 
Sbjct: 284 ALWLLEQMVTRGCPPDVVSYTTVING 309



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 53/199 (26%)

Query: 262  IIDVCGICGDYMKSRAIYEDLRSQNVT-----LNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316
            I+D+ G CG    +R ++E +  +NV      L +YVF+        +  F L  ++ M 
Sbjct: 1462 IVDMFGKCGSPQDARKVFEGMDQRNVVLWSAMLGVYVFH-----KQEEQAFGL--WRVMG 1514

Query: 317  KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
              GV  D  ++  LL  CC A                   G+L   V  + +I + +   
Sbjct: 1515 LEGVEPDAVTFLSLLTMCCHA-------------------GLLDAAVDEFVSISRDY--- 1552

Query: 377  KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                            G+ P    +S +I+     GLV +A  L   ML   C+P++   
Sbjct: 1553 ----------------GLEPGVDHFSCVIDLLGRLGLVNEAEDL---MLGMPCKPSAATW 1593

Query: 437  NILLQACVEACQFDRAFRL 455
            N LL A      F+RA R+
Sbjct: 1594 NCLLSAYKICGDFERALRV 1612


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 159/357 (44%), Gaps = 29/357 (8%)

Query: 112 SLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEV 171
           +   VA G  K+   GR++ V  V + + E G         SG+ +L + C  L   G  
Sbjct: 12  TFNTVADGFAKA---GRLEQVKEVYQGMVEAGYT----LRASGYGILIS-C--LCKVGNF 61

Query: 172 EMFVGLMEVLEEFRLPVKELDEEFRIVQLC-VNKPD-----VNLAIRYACIVPRADILFC 225
           +    L+  +   R   K +     I  LC +N+ +     +    RYA   P   + + 
Sbjct: 62  DEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYA---PPDALTYG 118

Query: 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YMKSRAIYEDLR 283
             V    K + +  AL   +        P+ +I   ++   G+C +    ++R ++E + 
Sbjct: 119 PIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLS--GLCQEEKVEEARLLFEKMV 176

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            Q +  N+  +N+L+N    A  ++   E++K M   G +    SYN L+   C   + V
Sbjct: 177 KQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLV 236

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A++++ ++     +     +V TY+T++   + +   Q A +V + M+  GVTPN  T+
Sbjct: 237 AAKDVFDKM----VRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATY 292

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           S LI+       V++A  L E+M+  G  P     NILL +   A + + AF+LFR 
Sbjct: 293 SCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRG 349



 Score = 39.3 bits (90), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 38/200 (19%), Positives = 77/200 (38%), Gaps = 24/200 (12%)

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           V P   T++++ +  A AG +EQ   +++ M++AG    +    IL+    +   FD A+
Sbjct: 6   VIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAY 65

Query: 454 RLFRSWTLSK-TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--YSSFDKRF- 509
           +L  +  L +  + A+      N     N   + ++ I     + P     Y    +R  
Sbjct: 66  KLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLC 125

Query: 510 ------------------SFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHI 549
                               KP    YN ++   C +      + L  +M    ++PN +
Sbjct: 126 KTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVV 185

Query: 550 SWTILIDACGGSGNVEGALQ 569
           ++  LI+    +  +E A +
Sbjct: 186 TYNTLINGLCKAWRIETAYE 205


>gi|356544435|ref|XP_003540656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Glycine max]
          Length = 1071

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 127/320 (39%), Gaps = 57/320 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLKFTL 309
           PN++    +I  C   G   K+   Y  +RS+NV  +  VFN+L+   A     D  F +
Sbjct: 507 PNVHTYGALIGGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDV 566

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
                 +   +  D  +   LLKAC  AG    AQE+Y  V+    KG  ++    Y+  
Sbjct: 567 LAEMAAETQPIDPDHVTIGALLKACTKAGQVERAQEVYKMVQKYNIKGCPEV----YTIA 622

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +   +    W+ A  V  DM   G+ P+ I  S+LI+   +A  ++ A  + +E  + G 
Sbjct: 623 INSCSQTGDWEYARTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEAHKGGI 682

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +      + L+ AC  A  + +A  L+                                 
Sbjct: 683 QIGIMSYSSLMGACSNARNWQKALELYE-------------------------------- 710

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPN 547
                          + K      T +T N L+ A C      KAL  + EM+ +GLSPN
Sbjct: 711 ---------------YLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFEMKGLGLSPN 755

Query: 548 HISWTILIDACGGSGNVEGA 567
            I+++ILI A     ++E A
Sbjct: 756 SITFSILIVASEKKDDMEAA 775



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 8/192 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P +Y     I+ C   GD+  +R +Y D+  + +  +    ++L++V  H  K     +V
Sbjct: 616 PEVYTI--AINSCSQTGDWEYARTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDV 673

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            +   K G+   + SY+ L+ AC  A N   A E+Y  +K L+    L + V T + ++ 
Sbjct: 674 LQEAHKGGIQIGIMSYSSLMGACSNARNWQKALELYEYLKSLK----LTITVSTVNALLT 729

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
              D   +Q AL+V  +M   G++PN+IT+S LI A      +E A  +     + G  P
Sbjct: 730 ALCDGDQFQKALEVLFEMKGLGLSPNSITFSILIVASEKKDDMEAAQMILSLAKKDGVAP 789

Query: 432 NSQCCNILLQAC 443
           N   C  ++  C
Sbjct: 790 NLIMCRCIIGMC 801



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 108/247 (43%), Gaps = 16/247 (6%)

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           ++++N+L+  C  + ++    E   +V  L     L+ D   Y+T++   A +    +  
Sbjct: 439 LSTFNMLMSVCASSQDS----EGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMF 494

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           +V   M+++GV PN  T+ +LI  CA AG V +A   +  M     +P+    N L+ AC
Sbjct: 495 EVFHKMVNSGVEPNVHTYGALIGGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAAC 554

Query: 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
            ++   DRAF +      ++TQ       D +   I  +     ++ T            
Sbjct: 555 AQSGAVDRAFDVLAEMA-AETQ-----PIDPDHVTIGAL----LKACTKAGQVERAQEVY 604

Query: 504 SFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561
              ++++ K     Y I + +C    D+   + + N+M   G+ P+ I  + LID  G +
Sbjct: 605 KMVQKYNIKGCPEVYTIAINSCSQTGDWEYARTVYNDMTQKGILPDEIFLSALIDVAGHA 664

Query: 562 GNVEGAL 568
             ++ A 
Sbjct: 665 KKLDAAF 671


>gi|242050202|ref|XP_002462845.1| hypothetical protein SORBIDRAFT_02g033010 [Sorghum bicolor]
 gi|241926222|gb|EER99366.1| hypothetical protein SORBIDRAFT_02g033010 [Sorghum bicolor]
          Length = 798

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 162/359 (45%), Gaps = 27/359 (7%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P+  + +   +  +GK   L +AL  +     H   P+ Y   T+I++ G+ G+  ++  
Sbjct: 182 PKLVVTYNTLIDLYGKAGRLKNALDMFLDMPAHGVMPDTYTFNTLINIFGLSGNSAQAEV 241

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++  +  + V  +   +N +M V A   DL+  L+ Y  + K  +  D  SY ILL+  C
Sbjct: 242 LFASMMVRGVKPDTKTYNVMMTVFASIGDLERVLKYYYQIGKACLHPDAVSYRILLQLLC 301

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
                 +A E+   ++ + + G   +   +   ++K++ D      A+   E     G  
Sbjct: 302 ---ERKMAHEVEDLIEGILSSGC-SVHEQSLPIVMKMYVDLGLLDEAIAFFERHCR-GKG 356

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            ++  +S++++A A  GL E+A H+F      G E +    N++++A  +A Q+DR   L
Sbjct: 357 ISSKNFSAIMDAFAEKGLWEEAEHIFCSERGVGNEKDIVEYNVMIKAYGQAKQYDRVSSL 416

Query: 456 FRSWTLSKTQVALGE-DYDGNTDRIS--NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
             S  + ++ V+  E  Y+      S     H+ K+ +                K   F+
Sbjct: 417 LES--MEESGVSSDECTYNSLIQMFSVGGFPHRAKKLLGKM-------------KDAGFE 461

Query: 513 PTTTTYNILMKA--CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           P   TY+ ++++  C         L NEM+T G+ PN I + ILID    +GNV+ AL 
Sbjct: 462 PKCETYSAIIRSYSCHCLVPEAIDLFNEMKTSGVEPNVIVYGILIDMFAETGNVKEALH 520



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           ++M++ GV +D  +YN L++   + G    A+++ G++K        +    TYS I++ 
Sbjct: 418 ESMEESGVSSDECTYNSLIQMFSVGGFPHRAKKLLGKMK----DAGFEPKCETYSAIIRS 473

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           ++       A+ +  +M ++GV PN I +  LI+  A  G V++A+H    + Q+G  PN
Sbjct: 474 YSCHCLVPEAIDLFNEMKTSGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGISPN 533

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
               +I+L + +      +A+  F SW  ++   +   D DG  D I++
Sbjct: 534 ----HIVLTSLI------KAYSKFNSWKEAQDLYSRMNDMDGGPDIIAS 572


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 132/333 (39%), Gaps = 49/333 (14%)

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC---- 335
           + ++    N  +FNSL++   N  D  +  ++   M   G       YNI + + C    
Sbjct: 337 MMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEK 396

Query: 336 LAGNTVL--AQEIYGE--------------------------------VKHLEAKGVLKL 361
           L    +L  A++IYGE                                +K +  KG +  
Sbjct: 397 LPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP- 455

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D  TYS ++     A   + A  + ++M   GVTP+  T++ LI++   AGL+EQA  LF
Sbjct: 456 DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLF 515

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDG--NT 476
           EEM   GC P       L+ A ++A Q  +A  +F            V  G   DG    
Sbjct: 516 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 575

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKA 534
             IS    +    +  T +   +  Y   + R +  P   TY  L+   C  +       
Sbjct: 576 GNISK-AFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 634

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           L++ M + G  PNHI +  LID    +G ++ A
Sbjct: 635 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSA 667



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 132/328 (40%), Gaps = 69/328 (21%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++Y    +ID     G   +++ ++E++RS   +  +  + +L++  + A  +    +
Sbjct: 489 TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAND 548

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL------------EAKGV 358
           ++  M   G   +  +Y  L+   C AGN   A E+Y ++               E +  
Sbjct: 549 IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHT 608

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
           L  +V TY  +V     A     A ++ + MLS+G  PN I + +LI+    AG ++ A 
Sbjct: 609 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 668

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD- 477
            +F +M + G  P+      L+         DR F+                  DG  D 
Sbjct: 669 EVFLQMTKCGYLPSVHTYTSLI---------DRMFK------------------DGRLDL 701

Query: 478 --RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA- 534
             ++ +   KD    + TPN V                   TY  ++   C      KA 
Sbjct: 702 AMKVLSQMLKD----SCTPNVV-------------------TYTAMIDGLCRIGESEKAL 738

Query: 535 -LMNEMRTVGLSPNHISWTILIDACGGS 561
            L++ M   G SPN +++T LID  G S
Sbjct: 739 KLLSLMEEKGCSPNVVTYTALIDGLGQS 766



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 114/307 (37%), Gaps = 40/307 (13%)

Query: 294 FNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L+ V  +A  +     V K M + G   D  +      A C  G        + +  
Sbjct: 212 YNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR-------WADAL 264

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            +  +   KLD    + ++    +A ++  A+     M      PN +T+ +L++     
Sbjct: 265 DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKK 324

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL--- 468
             +     +   M+  GC PN    N L+ +      +  A++L    T           
Sbjct: 325 KQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVY 384

Query: 469 --------GEDYDGNTDRISNMEHKDKQSIT--------NTPNFVPN-SHYSSFDKRF-- 509
                   G++   + D +   E    + +         N  NF         FDK F  
Sbjct: 385 NIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQL 444

Query: 510 -------SFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560
                   F P T+TY+ ++   C  T   +   L  EM+ VG++P+  ++TILID+   
Sbjct: 445 IKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCK 504

Query: 561 SGNVEGA 567
           +G +E A
Sbjct: 505 AGLIEQA 511



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN-- 299
           +    +H  +PN+     ++D  G+C  +    A  + + + S     N  V+++L++  
Sbjct: 601 FPCEDRHTLAPNVVTYGALVD--GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 658

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
             A  +    EV+  M K G +  + +Y  L+      G   LA ++  ++     K   
Sbjct: 659 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM----LKDSC 714

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             +V TY+ ++         + ALK+   M   G +PN +T+++LI+ 
Sbjct: 715 TPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDG 762


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 152/351 (43%), Gaps = 38/351 (10%)

Query: 244 YDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-- 299
           +D  K     P+ Y   + I   G+C  G   ++  + E ++   +      +N+L++  
Sbjct: 249 FDLMKCRGVKPDSYTYGSFIS--GMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGY 306

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
            N  +L+   +    M + G+M  +++YN+L+ A  L        E  G +K +  KG++
Sbjct: 307 CNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFL---DCKMDEADGIIKEMSEKGLV 363

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             D  TY+ ++  +      + A  + ++M+S G+ P  +T++SLI   +  G ++QA  
Sbjct: 364 P-DSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADD 422

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT--------QVALGED 471
           LFE++++ G  P+    N L+         DRAF + +     K          +  G  
Sbjct: 423 LFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRC 482

Query: 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR---------------FSFKPTTT 516
            +G  +    +  + K       +   N+  S + KR                 F PT  
Sbjct: 483 REGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLL 542

Query: 517 TYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           TYN L++  C +      + L+ EM + G++PN  ++  LI+   G GNVE
Sbjct: 543 TYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIE---GIGNVE 590



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 145/323 (44%), Gaps = 35/323 (10%)

Query: 125 REGRIDCVVGVLKKLNELGVAPL-----ELFDGSGFKLLKNECQRLLDSGEVEMFVGLME 179
           +EG+++   G+L+K+ E+G+ P       L DG      K   +   D  +  +  GLM 
Sbjct: 273 KEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGY---CNKGNLEMAFDYRDKMVREGLMP 329

Query: 180 VLEEFRLPVKEL------DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGK 233
            +  + + +  L      DE   I++    K  V  ++ Y       +IL   + R    
Sbjct: 330 TVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTY-------NILINGYCRCGNV 382

Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
           K+    A   +D        P      ++I V    G   ++  ++E +  + +  ++ +
Sbjct: 383 KK----AFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIM 438

Query: 294 FNSLMNVNAH----DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
           FN+L  ++ H    ++     + K M ++ V+ D  ++N L++  C  G    A+E+  E
Sbjct: 439 FNAL--IDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEE 496

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +K   ++G+ K D  +Y+T++  ++     + A +V+++MLS G  P  +T+++LI    
Sbjct: 497 MK---SRGI-KPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLC 552

Query: 410 NAGLVEQAMHLFEEMLQAGCEPN 432
                + A  L +EM+  G  PN
Sbjct: 553 KNEEGDHAEQLLKEMISKGITPN 575



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 107/267 (40%), Gaps = 29/267 (10%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           Y++L++ACC       A E +  +K    KGV+   V   + ++ +F  +   + A  + 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMK---GKGVIP-HVHACNDMLSLFLKSNRTEKAWVLY 179

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
            +M    +  + +T++ +IN     G +++A      M   G +PN    N ++      
Sbjct: 180 AEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSR 239

Query: 447 CQFDRAFRLF--------RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ------SIT- 491
            + + A  +F        +  + +      G   +G  +  S M  K K+      ++T 
Sbjct: 240 GRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTY 299

Query: 492 --------NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRT 541
                   N  N      Y     R    PT +TYN+L+ A   D        ++ EM  
Sbjct: 300 NTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSE 359

Query: 542 VGLSPNHISWTILIDACGGSGNVEGAL 568
            GL P+ +++ ILI+     GNV+ A 
Sbjct: 360 KGLVPDSVTYNILINGYCRCGNVKKAF 386


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 132/333 (39%), Gaps = 49/333 (14%)

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC---- 335
           + ++    N  +FNSL++   N  D  +  ++   M   G       YNI + + C    
Sbjct: 168 MMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEK 227

Query: 336 LAGNTVL--AQEIYGE--------------------------------VKHLEAKGVLKL 361
           L    +L  A++IYGE                                +K +  KG +  
Sbjct: 228 LPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP- 286

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D  TYS ++     A   + A  + ++M   GVTP+  T++ LI++   AGL+EQA  LF
Sbjct: 287 DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLF 346

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDG--NT 476
           EEM   GC P       L+ A ++A Q  +A  +F            V  G   DG    
Sbjct: 347 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 406

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKA 534
             IS    +    +  T +   +  Y   + R +  P   TY  L+   C  +       
Sbjct: 407 GNISK-AFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 465

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           L++ M + G  PNHI +  LID    +G ++ A
Sbjct: 466 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSA 498



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 137/335 (40%), Gaps = 69/335 (20%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++Y    +ID     G   +++ ++E++RS   +  +  + +L++  + A  +    +
Sbjct: 320 TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAND 379

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL------------EAKGV 358
           ++  M   G   +  +Y  L+   C AGN   A E+Y ++               E +  
Sbjct: 380 IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHT 439

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
           L  +V TY  +V     A     A ++ + MLS+G  PN I + +LI+    AG ++ A 
Sbjct: 440 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 499

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD- 477
            +F +M + G  P+      L+         DR F+                  DG  D 
Sbjct: 500 EVFLQMTKCGYLPSVHTYTSLI---------DRMFK------------------DGRLDL 532

Query: 478 --RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA- 534
             ++ +   KD    + TPN V                   TY  ++   C      KA 
Sbjct: 533 AMKVLSQMLKD----SCTPNVV-------------------TYTAMIDGLCRIGESEKAL 569

Query: 535 -LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            L++ M   G SPN +++T LID  G +G ++ +L
Sbjct: 570 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 604



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  + +L++    AH +    E+   M   G   +   Y+ L+   C AG    AQE++
Sbjct: 443 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 502

Query: 348 GEVKHLEAKGVLKLDVFTYSTIV-KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
            ++      G L   V TY++++ ++F D +   +A+KV   ML    TPN +T++++I+
Sbjct: 503 LQMTKC---GYLP-SVHTYTSLIDRMFKDGRL-DLAMKVLSQMLKDSCTPNVVTYTAMID 557

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
                G  E+A+ L   M + GC PN      L+    +A + D +  LF
Sbjct: 558 GLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 607



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 107/227 (47%), Gaps = 14/227 (6%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           A++      K   +PN+     +ID  G+C  G+  K+  +   +  +  + N+  + +L
Sbjct: 533 AMKVLSQMLKDSCTPNVVTYTAMID--GLCRIGESEKALKLLSLMEEKGCSPNVVTYTAL 590

Query: 298 MNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++    A  +  +L+++  M + G   +  +Y +L+   C AG    A+ + GE+K    
Sbjct: 591 IDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYW 650

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
              L+     Y   ++ F+  K +  +L + E+M S G  P    +  LI+  + AG +E
Sbjct: 651 PKYLQ----GYRCAIQGFS--KSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLE 704

Query: 416 QAMHLFEEMLQ--AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
            AM L +EM++  +  + ++     L+QA   A Q + AFRL+   T
Sbjct: 705 IAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMT 751



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 96/213 (45%), Gaps = 10/213 (4%)

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN-- 299
           +    +H  +PN+     ++D  G+C  +    A  + + + S     N  V+++L++  
Sbjct: 432 FPCEDRHTLAPNVVTYGALVD--GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 489

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
             A  +    EV+  M K G +  + +Y  L+      G   LA ++  ++     K   
Sbjct: 490 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM----LKDSC 545

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             +V TY+ ++         + ALK+   M   G +PN +T+++LI+    AG ++ ++ 
Sbjct: 546 TPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLD 605

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           LF +M + GC PN     +L+     A   D+A
Sbjct: 606 LFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKA 638



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 114/307 (37%), Gaps = 40/307 (13%)

Query: 294 FNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L+ V  +A  +     V K M + G   D  +      A C  G        + +  
Sbjct: 43  YNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR-------WADAL 95

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            +  +   KLD    + ++    +A ++  A+     M      PN +T+ +L++     
Sbjct: 96  DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKK 155

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL--- 468
             +     +   M+  GC PN    N L+ +      +  A++L    T           
Sbjct: 156 KQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVY 215

Query: 469 --------GEDYDGNTDRISNMEHKDKQSI--------TNTPNFVPN-SHYSSFDKRF-- 509
                   G++   + D +   E    + +         N  NF         FDK F  
Sbjct: 216 NIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQL 275

Query: 510 -------SFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560
                   F P T+TY+ ++   C  T   +   L  EM+ VG++P+  ++TILID+   
Sbjct: 276 IKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCK 335

Query: 561 SGNVEGA 567
           +G +E A
Sbjct: 336 AGLIEQA 342



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 10/177 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTL 309
           PN  +   +ID  G C  G    ++ ++  +       +++ + SL++    D  L   +
Sbjct: 477 PNHIVYDALID--GFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAM 534

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V   M K     ++ +Y  ++   C  G +  A ++   +  +E KG    +V TY+ +
Sbjct: 535 KVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKL---LSLMEEKGC-SPNVVTYTAL 590

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +     A    ++L +   M   G +PN +T+  LIN    AGL+++A  L  EM Q
Sbjct: 591 IDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQ 647


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 147/319 (46%), Gaps = 33/319 (10%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMA 322
           G+C  GD  ++  ++ + +++++  ++ V+NSL+        +   L+V   M + G   
Sbjct: 359 GLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHP 418

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+ +YNI++   C  GN   A  +  +      KG L  DVFT++T++  +        A
Sbjct: 419 DIWTYNIIINGLCKMGNISDAAVVMNDAI---VKGYLP-DVFTFNTLIDGYCKRLKLDSA 474

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           L++ E M + G+ P+ IT++S++N    AG  ++    FEEM+  GC PN+   NIL++ 
Sbjct: 475 LQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIEN 534

Query: 443 CVEACQFDRA----FRLFRSW----TLSKTQVALG----EDYDGNTDRISNMEHKDKQSI 490
             +  Q + A     R+ +       +S   +  G     D DG       ++ K   + 
Sbjct: 535 FCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSAT 594

Query: 491 TNTPNFVPNSHYSSFDKRFS-----------FKPTTTTYNILMKACC--TDYYRVKALMN 537
            +T N +  ++ S  + + +           +KP   TY IL+   C   +  R  A + 
Sbjct: 595 ADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLA 654

Query: 538 EMRTVGLSPNHISWTILID 556
           EM + G  P+  ++  +++
Sbjct: 655 EMISKGFVPSMATFGRMLN 673



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 128/319 (40%), Gaps = 42/319 (13%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG--VMADMASY 327
           GD M+S A+   +  + ++ N +  N  +     D +   E    ++++G  V  D+ +Y
Sbjct: 225 GDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLE-EAVALVERMGAYVAPDVVTY 283

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N L++  C       A +  G + +   +G +  D FTY+TI+  +  +   Q A ++ +
Sbjct: 284 NTLMRGLCKDSKVQEAAQYLGRMMN---QGCIP-DDFTYNTIIDGYCKSGMLQEATELLK 339

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           D +  G  P+ +T+ SLIN     G +E+A+ LF E      +P+    N L++      
Sbjct: 340 DAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQG 399

Query: 448 QFDRAFRLFRS----------WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT--PN 495
               A ++             WT +     L +   GN   IS+       +I     P+
Sbjct: 400 LILHALQVMNEMVEEGCHPDIWTYNIIINGLCK--MGN---ISDAAVVMNDAIVKGYLPD 454

Query: 496 -FVPNSHYSSFDKR---------------FSFKPTTTTYNILMKACCT--DYYRVKALMN 537
            F  N+    + KR               +   P   TYN ++   C       V     
Sbjct: 455 VFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFE 514

Query: 538 EMRTVGLSPNHISWTILID 556
           EM   G  PN I++ ILI+
Sbjct: 515 EMILKGCRPNAITYNILIE 533



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 125/303 (41%), Gaps = 58/303 (19%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
           G    +R +++++  ++V  ++  FN++++      D+  +  +   + K G+ A+  + 
Sbjct: 190 GHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTC 249

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           NI ++  C  G     +E    V+ + A   +  DV TY+T+++        Q A +   
Sbjct: 250 NIWIRGLCEDGRL---EEAVALVERMGA--YVAPDVVTYNTLMRGLCKDSKVQEAAQYLG 304

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS-QCCNILLQACVEA 446
            M++ G  P+  T++++I+    +G++++A  L ++ +  G  P+    C+++   C E 
Sbjct: 305 RMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEG 364

Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
              +RA  LF                       +  + KD                    
Sbjct: 365 -DIERALELF-----------------------NEAQAKD-------------------- 380

Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNV 564
                KP    YN L+K  C     + AL  MNEM   G  P+  ++ I+I+     GN+
Sbjct: 381 ----LKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNI 436

Query: 565 EGA 567
             A
Sbjct: 437 SDA 439



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 115/280 (41%), Gaps = 23/280 (8%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           + ++L+N   HD     +VY  M   GV  D  ++ + LK+ CL G   +A  +   ++ 
Sbjct: 112 IMDALVNAAYHDQAH--KVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRL---LRS 166

Query: 353 LEAKGVLKLDVFTYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
           L  +G        Y T+V+ ++A    +  A  + ++ML   V P+  T++++++A    
Sbjct: 167 LSERGC-DAKPAAYCTVVRGLYAHGHGYN-ARHLFDEMLGRDVFPDVATFNNVLHALCQK 224

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
           G V ++  L  ++L+ G   N   CNI ++   E  + + A             VAL E 
Sbjct: 225 GDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEA-------------VALVER 271

Query: 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR 531
                       +   + +         + Y          P   TYN ++   C     
Sbjct: 272 MGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGML 331

Query: 532 VKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +A  L+ +    G  P+ +++  LI+     G++E AL+
Sbjct: 332 QEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALE 371



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 6/140 (4%)

Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           FN+L++      DL     +++ + + G  A   ++NIL+ A     N  +A++I+GE  
Sbjct: 563 FNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGE-- 620

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            + +KG  K D++TY  +V     A     A     +M+S G  P+  T+  ++N  A  
Sbjct: 621 -MISKG-YKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMN 678

Query: 412 GLVEQAMHLFEEMLQAGCEP 431
             V +A+ +   M++ G  P
Sbjct: 679 HRVSEAVAIIHIMVRMGVVP 698


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 141/320 (44%), Gaps = 9/320 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           PN+     +I    I G +  ++ + +++  + ++ N+  +N+L+N    + KF    E+
Sbjct: 286 PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y  M   G++ +  +YN ++   C       A++++    +L A      DVFT++T++ 
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMF----YLMATKGCSPDVFTFTTLID 401

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +  AK     +++  +M   G+  NT+T+++LI+     G +  A+ L ++M+ +G  P
Sbjct: 402 GYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCP 461

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +   CN LL    +  +   A  +F++   SK  +     ++G    +          I 
Sbjct: 462 DIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLIN 521

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHI 549
                     Y     R    P T TY+ ++   C      +A  +   M +   SPN +
Sbjct: 522 EGKFLEAEELYEEMPHR-GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVV 580

Query: 550 SWTILIDACGGSGNVEGALQ 569
           ++  LI+    +G V+  L+
Sbjct: 581 TFNTLINGYCKAGRVDDGLE 600



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 19/177 (10%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL---- 318
           G C  GD   +  + + + S  V  +I   N+L++   +   LK  LE++K MQK     
Sbjct: 437 GFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDL 496

Query: 319 -------GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
                  GV  D+ +YNIL+      G  + A+E+Y E+ H   +G++  D  TYS+++ 
Sbjct: 497 DASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH---RGIVP-DTITYSSMID 552

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
                     A ++   M S   +PN +T+++LIN    AG V+  + LF EM + G
Sbjct: 553 GLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRG 609



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 137/332 (41%), Gaps = 33/332 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN+     +I+     G + ++  +Y+++  + +  N   +NS+++       L    +
Sbjct: 320 SPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAED 379

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M   G   D+ ++  L+   C A       E+  E+     +G++  +  TY+T++
Sbjct: 380 MFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPR---RGLVA-NTVTYNTLI 435

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA--- 427
             F        AL + + M+S+GV P+ +T ++L++   + G ++ A+ +F+ M ++   
Sbjct: 436 HGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMD 495

Query: 428 --------GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
                   G EP+    NIL+   +   +F  A  L+      +  V     Y    D +
Sbjct: 496 LDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMP-HRGIVPDTITYSSMIDGL 554

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK---ALM 536
                 D+     T  FV            SF P   T+N L+   C    RV     L 
Sbjct: 555 CKQSRLDEA----TQMFVSMGSK-------SFSPNVVTFNTLINGYCK-AGRVDDGLELF 602

Query: 537 NEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            EM   G+  + I +  LI      GN+ GAL
Sbjct: 603 CEMGRRGIVADAIIYITLIYGFRKVGNINGAL 634



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 22/256 (8%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----- 270
           I+P   I + + +  F K+  L +A   +        SP+++   T+ID  G CG     
Sbjct: 354 IIPNT-ITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLID--GYCGAKRID 410

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           D M+   +  ++  + +  N   +N+L++      DL   L++ + M   GV  D+ + N
Sbjct: 411 DGME---LLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCN 467

Query: 329 ILLKACCLAGNTVLAQEIYGEVKH----LEA----KGVLKLDVFTYSTIVKVFADAKWWQ 380
            LL   C  G    A E++  ++     L+A     GV + DV TY+ ++    +   + 
Sbjct: 468 TLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGV-EPDVLTYNILICGLINEGKFL 526

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A ++ E+M   G+ P+TIT+SS+I+       +++A  +F  M      PN    N L+
Sbjct: 527 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 586

Query: 441 QACVEACQFDRAFRLF 456
               +A + D    LF
Sbjct: 587 NGYCKAGRVDDGLELF 602



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 147/381 (38%), Gaps = 39/381 (10%)

Query: 219 RADIL-FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R DI  F   ++ F     L  AL  +    K    P++    T++   G+C D+  S A
Sbjct: 113 RCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLH--GLCLDHRVSEA 170

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACC 335
           +  DL  Q    ++  F +LMN    + +    + +   M + G+  D  +Y   +   C
Sbjct: 171 L--DLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMC 228

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+TV A  +   ++ +E    +K +V  YS I+           +  +  +M   G+ 
Sbjct: 229 KMGDTVSALNL---LRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIF 285

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T++ +I     +G    A  L +EML+    PN    N L+ A V+  +F  A  L
Sbjct: 286 PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345

Query: 456 FRSW---TLSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPN--------SHY 502
           +       +    +      DG    DR+   E  D   +  T    P+          Y
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE--DMFYLMATKGCSPDVFTFTTLIDGY 403

Query: 503 SSFDK------------RFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNH 548
               +            R      T TYN L+   C   D      L  +M + G+ P+ 
Sbjct: 404 CGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDI 463

Query: 549 ISWTILIDACGGSGNVEGALQ 569
           ++   L+D    +G ++ AL+
Sbjct: 464 VTCNTLLDGLCDNGKLKDALE 484



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 105/218 (48%), Gaps = 18/218 (8%)

Query: 221 DILFCNFVREF----GKKRDLVSALRAYDASKKHLSSPNMY------ICRTIIDVCGIC- 269
           DI+ CN + +     GK +D +   +A   SK  L + + +      +    I +CG+  
Sbjct: 462 DIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLIN 521

Query: 270 -GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMAS 326
            G ++++  +YE++  + +  +   ++S+++       L    +++ +M       ++ +
Sbjct: 522 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVT 581

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           +N L+   C AG      E++ E+     +G++  D   Y T++  F        AL + 
Sbjct: 582 FNTLINGYCKAGRVDDGLELFCEMGR---RGIVA-DAIIYITLIYGFRKVGNINGALDIF 637

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           ++M+S+GV P+TIT  +++    +   +E+A+ + E++
Sbjct: 638 QEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 145/322 (45%), Gaps = 29/322 (9%)

Query: 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVY 312
           +Y+   +I+  G  G +  S  +   ++ + V+ +I  +N+++N  A    D +  L ++
Sbjct: 171 VYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLF 230

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M+  G+  D+ +YN LL AC   G   L  E     + +   G++  D+ TYS +V+ 
Sbjct: 231 AEMRHEGIQPDVITYNTLLGACAHRG---LGDEAEMVFRTMNESGIVP-DINTYSYLVQT 286

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           F      +   ++  +M S G  P+  +++ L+ A A  G +++AM +F +M  AGC  N
Sbjct: 287 FGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVAN 346

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD----KQ 488
           +   ++LL    +  ++D    +F    +S T      D D  T  I      +    K+
Sbjct: 347 AATYSVLLNLYGKHGRYDDVRDIFLEMKVSNT------DPDAGTYNILIQVFGEGGYFKE 400

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSP 546
            +T   + V            + +P   TY  L+ AC     Y   K ++  M   G+ P
Sbjct: 401 VVTLFHDMVEE----------NVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVP 450

Query: 547 NHISWTILIDACGGSGNVEGAL 568
           +  ++T +I+A G +   E AL
Sbjct: 451 SSKAYTGVIEAFGQAALYEEAL 472



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 164/382 (42%), Gaps = 34/382 (8%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKS 275
           V R   ++   +  +G+     ++L   +  K+   SP++    T+I+ C   G D+   
Sbjct: 167 VARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGL 226

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAH-DLKFTLE-VYKNMQKLGVMADMASYNILLKA 333
             ++ ++R + +  ++  +N+L+   AH  L    E V++ M + G++ D+ +Y+ L++ 
Sbjct: 227 LGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQT 286

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
               G     +++   ++ +E+ G L  D+ +Y+ +++ +A+    + A+ V   M +AG
Sbjct: 287 F---GKLNRLEKVSELLREMESGGNLP-DITSYNVLLEAYAELGSIKEAMDVFRQMQAAG 342

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
              N  T+S L+N     G  +    +F EM  +  +P++   NIL+Q   E   F    
Sbjct: 343 CVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVV 402

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNME-HKDKQSI---TNTPNFVPNSH-YSSFDKR 508
            LF        +  + E Y+G          ++D + I    N    VP+S  Y+   + 
Sbjct: 403 TLFHDMVEENVEPNM-ETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEA 461

Query: 509 F-------------------SFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPN 547
           F                      PT  TYN  + A      Y   +A+++ M   GL  +
Sbjct: 462 FGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRD 521

Query: 548 HISWTILIDACGGSGNVEGALQ 569
             S+  +I A    G  E A++
Sbjct: 522 VHSFNGVIKAFRQGGQYEEAVK 543



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 126/300 (42%), Gaps = 25/300 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           PNM     +I  CG  G Y  ++ I   +  + +  +   +  ++        +   L V
Sbjct: 415 PNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVV 474

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M ++G    + +YN  + A    G   L +E    +  +   G LK DV +++ ++K
Sbjct: 475 FNTMNEVGSNPTVETYNSFIHAFARGG---LYKEAEAILSRMNESG-LKRDVHSFNGVIK 530

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F     ++ A+K   +M  A   PN +T   +++   +AGLV+++   F+E+  +G  P
Sbjct: 531 AFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILP 590

Query: 432 NSQCCNILLQACVEACQFDRAFRLFR---SWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           +  C  ++L    +  + + A+ L     +  +S     +G+   G+ D  SN +     
Sbjct: 591 SVMCYCLMLALYAKNDRLNDAYNLIDEMITMRVSDIHQGIGQMIKGDFDDESNWQ----- 645

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
            I        NS       RF        YN L++A    + R +A  ++NE    GL P
Sbjct: 646 -IVEYVFDKLNSEGCGLGMRF--------YNALLEALWWMFQRERAARVLNEASKRGLFP 696



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 105/247 (42%), Gaps = 14/247 (5%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           IVP +   +   +  FG+      AL  ++   +  S+P +    + I      G Y ++
Sbjct: 448 IVPSSKA-YTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEA 506

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKA 333
            AI   +    +  +++ FN ++       ++   ++ Y  M+K     +  +  ++L  
Sbjct: 507 EAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSV 566

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C AG    ++E + E+K   A G+L   V  Y  ++ ++A       A  + ++M++  
Sbjct: 567 YCSAGLVDESEEQFQEIK---ASGILP-SVMCYCLMLALYAKNDRLNDAYNLIDEMITMR 622

Query: 394 VTPNTITWSSLINAC----ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
           V+        +I       +N  +VE   ++F+++   GC    +  N LL+A     Q 
Sbjct: 623 VSDIHQGIGQMIKGDFDDESNWQIVE---YVFDKLNSEGCGLGMRFYNALLEALWWMFQR 679

Query: 450 DRAFRLF 456
           +RA R+ 
Sbjct: 680 ERAARVL 686


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 167/372 (44%), Gaps = 36/372 (9%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
           + + +  +   +    AL+ +   K+    P +     I++V G  G  + K  A+ +D+
Sbjct: 182 YTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDM 241

Query: 283 RSQNVTLNIYVFNSLMNV-NAHDL-KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           +   +  ++  +N+L++   A  L +  L++++ ++  G   D  +YN LL    + G +
Sbjct: 242 KCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLD---VYGKS 298

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
              +E    +K +E+    +  V TY+++V  +      + AL +K  M+  G+ P+  T
Sbjct: 299 RRPKEAMEVLKQMESNS-FRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYT 357

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +++L++   NAG  E AM +FEEM + GC+PN    N L++   +  +F+   ++F+   
Sbjct: 358 YTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIK 417

Query: 461 LSKTQ----------VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
           + K               G+  +G    +S +  + K+S         N+  S++ +  S
Sbjct: 418 VCKCSPDIVTWNTLLAVFGQ--NGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGS 475

Query: 511 F---------------KPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTI 553
           F                P  +TYN ++        + + + ++ EM+  G  PN ++++ 
Sbjct: 476 FDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSS 535

Query: 554 LIDACGGSGNVE 565
           L+ A      VE
Sbjct: 536 LLHAYANGREVE 547



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 146/332 (43%), Gaps = 33/332 (9%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           P++Y   T++      G    +  ++E++R      NI  FN+L+ +     KF   ++V
Sbjct: 353 PDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKV 412

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +K ++      D+ ++N LL    + G   +  E+ G  + ++ +     +  T++T++ 
Sbjct: 413 FKEIKVCKCSPDIVTWNTLL---AVFGQNGMDSEVSGVFEEMK-RSRFAPERDTFNTLIS 468

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +     +  A+   + ML AGV+P+  T+++++   A  GL EQ+  +  EM   GC+P
Sbjct: 469 AYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKP 528

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSW---------TLSKTQVALGEDYD--GNTDRIS 480
           N    + LL A     + +R   L              L KT V +    D    T+R +
Sbjct: 529 NEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETER-A 587

Query: 481 NMEHKDKQ------------SITNTPNFVPNSH-YSSFDKRFSFKPTTTTYNIL--MKAC 525
            +E + +             SI      VP ++   +F        + T+YN L  M + 
Sbjct: 588 FLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSR 647

Query: 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
             ++++ + +  E+   G+ P+ IS+ I+I A
Sbjct: 648 TENFHKSEQIFREILDKGIEPDVISYNIVIYA 679



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 28/229 (12%)

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           + +LEA G  ++DV+ Y++++  +A+ K ++ ALKV   M   G  P  IT+++++N   
Sbjct: 167 LHNLEADG-FEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYG 225

Query: 410 NAGLV-EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK----- 463
             G+   + + L ++M   G  P+    N L+  C     ++ A  LF    ++      
Sbjct: 226 KMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDA 285

Query: 464 -TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
            T  AL + Y G + R        KQ  +N                 SF+P+  TYN L+
Sbjct: 286 VTYNALLDVY-GKSRRPKEAMEVLKQMESN-----------------SFRPSVVTYNSLV 327

Query: 523 KACCTDYYRVKALMNEMRTV--GLSPNHISWTILIDACGGSGNVEGALQ 569
            A         AL+ + + V  G+ P+  ++T L+     +G  E A++
Sbjct: 328 SAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAME 376



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 17/182 (9%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           + R I  D+ + N  L+IY    ++      L F       M + G+   + SYN L+  
Sbjct: 592 RKRGISPDVTTSNAMLSIYGRKKMVPKANEILNF-------MYESGLTLSLTSYNSLMYM 644

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
                N   +++I+ E+     KG+ + DV +Y+ ++  +        A ++ E+M    
Sbjct: 645 YSRTENFHKSEQIFREILD---KGI-EPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPA 700

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL------LQACVEAC 447
             P+ +T+++ I A A   +  +A+ +   M++ GC+PN    N +      L+   EAC
Sbjct: 701 PVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKLRDEAC 760

Query: 448 QF 449
            F
Sbjct: 761 SF 762



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           LV   RA+   +K   SP++     ++ + G      K+  I   +    +TL++  +NS
Sbjct: 581 LVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNS 640

Query: 297 LMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           LM + +    F  + ++++ +   G+  D+ SYNI++ A C       A+ I  E+K   
Sbjct: 641 LMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPA 700

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
                  DV TY+T +  +A    +  A+ V   M+  G  PN  T++S+++      L 
Sbjct: 701 PVP----DVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKLR 756

Query: 415 EQA 417
           ++A
Sbjct: 757 DEA 759



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 78/419 (18%), Positives = 168/419 (40%), Gaps = 86/419 (20%)

Query: 74  YADMASKLAKDGRLEEFAMIVESVVVSEG---NVSKFASMLSLEMVASGIVKSIREGRID 130
           Y  + S   + G LE+ A++++  +V +G   +V  + ++LS      G V +   G+ +
Sbjct: 323 YNSLVSAYVRGGLLED-ALVLKRKMVDKGIKPDVYTYTTLLS------GFVNA---GKEE 372

Query: 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE 190
             + V +++ ++G  P             N C           F  L+++  + R   +E
Sbjct: 373 LAMEVFEEMRKVGCKP-------------NICT----------FNALIKMYGD-RGKFEE 408

Query: 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250
           + + F+ +++C   PD+              + +   +  FG+          ++  K+ 
Sbjct: 409 MVKVFKEIKVCKCSPDI--------------VTWNTLLAVFGQNGMDSEVSGVFEEMKRS 454

Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFT 308
             +P      T+I   G CG + ++ A Y+ +    V+ ++  +N+++   A     + +
Sbjct: 455 RFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQS 514

Query: 309 LEVYKNMQKLGVMADMASYNILLKACC----LAGNTVLAQEIY-GEVK------------ 351
            +V   M+  G   +  +Y+ LL A      +     LA+EIY G +K            
Sbjct: 515 EKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLV 574

Query: 352 ---------------HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
                              +G+   DV T + ++ ++   K    A ++   M  +G+T 
Sbjct: 575 NSKVDLLVETERAFLEFRKRGI-SPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTL 633

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           +  +++SL+   +      ++  +F E+L  G EP+    NI++ A       D A R+
Sbjct: 634 SLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRI 692


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 141/320 (44%), Gaps = 9/320 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           PN+     +I    I G +  ++ + +++  + ++ N+  +N+L+N    + KF    E+
Sbjct: 286 PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y  M   G++ +  +YN ++   C       A++++    +L A      DVFT++T++ 
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMF----YLMATKGCSPDVFTFTTLID 401

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +  AK     +++  +M   G+  NT+T+++LI+     G +  A+ L ++M+ +G  P
Sbjct: 402 GYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCP 461

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +   CN LL    +  +   A  +F++   SK  +     ++G    +          I 
Sbjct: 462 DIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLIN 521

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHI 549
                     Y     R    P T TY+ ++   C      +A  +   M +   SPN +
Sbjct: 522 EGKFLEAEELYEEMPHR-GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVV 580

Query: 550 SWTILIDACGGSGNVEGALQ 569
           ++  LI+    +G V+  L+
Sbjct: 581 TFNTLINGYCKAGRVDDGLE 600



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 19/177 (10%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL---- 318
           G C  GD   +  + + + S  V  +I   N+L++   +   LK  LE++K MQK     
Sbjct: 437 GFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDL 496

Query: 319 -------GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
                  GV  D+ +YNIL+      G  + A+E+Y E+ H   +G++  D  TYS+++ 
Sbjct: 497 DASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH---RGIVP-DTITYSSMID 552

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
                     A ++   M S   +PN +T+++LIN    AG V+  + LF EM + G
Sbjct: 553 GLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRG 609



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 138/332 (41%), Gaps = 33/332 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN+     +I+     G + ++  +Y+++  + +  N   +NS+++       L    +
Sbjct: 320 SPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAED 379

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M   G   D+ ++  L+   C A       E+  E+     +G++  +  TY+T++
Sbjct: 380 MFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPR---RGLVA-NTVTYNTLI 435

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA--- 427
             F        AL + + M+S+GV P+ +T ++L++   + G ++ A+ +F+ M ++   
Sbjct: 436 HGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMD 495

Query: 428 --------GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
                   G EP+    NIL+   +   +F  A  L+      +  V     Y    D +
Sbjct: 496 LDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMP-HRGIVPDTITYSSMIDGL 554

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK---ALM 536
                 D+ +            + S   + SF P   T+N L+   C    RV     L 
Sbjct: 555 CKQSRLDEAT----------QMFVSMGSK-SFSPNVVTFNTLINGYCK-AGRVDDGLELF 602

Query: 537 NEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            EM   G+  + I +  LI      GN+ GAL
Sbjct: 603 CEMGRRGIVADAIIYITLIYGFRKVGNINGAL 634



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 22/256 (8%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----- 270
           I+P   I + + +  F K+  L +A   +        SP+++   T+ID  G CG     
Sbjct: 354 IIPNT-ITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLID--GYCGAKRID 410

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           D M+   +  ++  + +  N   +N+L++      DL   L++ + M   GV  D+ + N
Sbjct: 411 DGME---LLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCN 467

Query: 329 ILLKACCLAGNTVLAQEIYGEVKH----LEA----KGVLKLDVFTYSTIVKVFADAKWWQ 380
            LL   C  G    A E++  ++     L+A     GV + DV TY+ ++    +   + 
Sbjct: 468 TLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGV-EPDVLTYNILICGLINEGKFL 526

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A ++ E+M   G+ P+TIT+SS+I+       +++A  +F  M      PN    N L+
Sbjct: 527 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 586

Query: 441 QACVEACQFDRAFRLF 456
               +A + D    LF
Sbjct: 587 NGYCKAGRVDDGLELF 602



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 147/381 (38%), Gaps = 39/381 (10%)

Query: 219 RADIL-FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R DI  F   ++ F     L  AL  +    K    P++    T++   G+C D+  S A
Sbjct: 113 RCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLH--GLCLDHRVSEA 170

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACC 335
           +  DL  Q    ++  F +LMN    + +    + +   M + G+  D  +Y   +   C
Sbjct: 171 L--DLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMC 228

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+TV A  +   ++ +E    +K +V  YS I+           +  +  +M   G+ 
Sbjct: 229 KMGDTVSALNL---LRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIF 285

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T++ +I     +G    A  L +EML+    PN    N L+ A V+  +F  A  L
Sbjct: 286 PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345

Query: 456 FRSW---TLSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPN--------SHY 502
           +       +    +      DG    DR+   E  D   +  T    P+          Y
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE--DMFYLMATKGCSPDVFTFTTLIDGY 403

Query: 503 SSFDK------------RFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNH 548
               +            R      T TYN L+   C   D      L  +M + G+ P+ 
Sbjct: 404 CGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDI 463

Query: 549 ISWTILIDACGGSGNVEGALQ 569
           ++   L+D    +G ++ AL+
Sbjct: 464 VTCNTLLDGLCDNGKLKDALE 484


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 151/346 (43%), Gaps = 65/346 (18%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLN 290
           K R +  AL  +   K    SPN++   ++I   G+C    + ++ A+  ++ S N+  N
Sbjct: 274 KDRRVNEALDIFSYMKAKGISPNIFTYNSLIQ--GLCNFSRWREASAMLNEMMSLNIMPN 331

Query: 291 IYVFNSLMNV-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
           I  F+ L+N+     N  + +    V K M ++GV  ++ +Y+ L+    L    V A++
Sbjct: 332 IVTFSLLINIFCKEGNVFEAR---GVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARK 388

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           ++     +  KG  K DVF+Y+ ++  +  AK    A ++  +M+  G+TP+ +++++LI
Sbjct: 389 LFDV---MITKGC-KPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLI 444

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           +     G + +A  LF+ ML  G  P+    +ILL    +     +AFRLFR+       
Sbjct: 445 DGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAM------ 498

Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525
                                             S Y         KP    YNIL+ A 
Sbjct: 499 ---------------------------------QSTY--------LKPNMVMYNILIDAM 517

Query: 526 CT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           C   +    + L +E+   GL PN   +T +I+     G ++ AL+
Sbjct: 518 CKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALE 563



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 152/351 (43%), Gaps = 40/351 (11%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQ 285
           V +FG+      A+  +D        P+++   TII+  G+C  G+ + +  ++  +   
Sbjct: 205 VGKFGQ------AVELFDDMVARGYQPDVHTYTTIIN--GLCKIGETVAAAGLFRKMGEA 256

Query: 286 NVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
               ++  ++++++    D +    L+++  M+  G+  ++ +YN L++  C       A
Sbjct: 257 GCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREA 316

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
             +  E+  L     +  ++ T+S ++ +F        A  V + M   GV PN +T+SS
Sbjct: 317 SAMLNEMMSLN----IMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSS 372

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--- 460
           L+N  +    V +A  LF+ M+  GC+P+    NIL+    +A +   A +LF       
Sbjct: 373 LMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQG 432

Query: 461 LSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
           L+   V+     DG     R+       K  +TN                    P   TY
Sbjct: 433 LTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGN-----------------LPDLCTY 475

Query: 519 NILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           +IL+   C   Y  KA  L   M++  L PN + + ILIDA   S N++ A
Sbjct: 476 SILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEA 526



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 114/242 (47%), Gaps = 18/242 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + + + +  +  + ++V A + +D        P+++    +I+         +++ ++ +
Sbjct: 368 VTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNE 427

Query: 282 LRSQNVTLNIYVFNSLMN--------VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           +  Q +T +I  +N+L++          AHDL      +KNM   G + D+ +Y+ILL  
Sbjct: 428 MIHQGLTPDIVSYNTLIDGLCQLGRLREAHDL------FKNMLTNGNLPDLCTYSILLDG 481

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C  G    A  ++  ++       LK ++  Y+ ++     ++  + A K+  ++   G
Sbjct: 482 FCKQGYLAKAFRLFRAMQ----STYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQG 537

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + PN   ++++IN     GL+++A+  F  M + GC PN    N++++  ++     RA 
Sbjct: 538 LQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAV 597

Query: 454 RL 455
           +L
Sbjct: 598 QL 599



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 99/207 (47%), Gaps = 6/207 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN+    ++++   +  + +++R +++ + ++    +++ +N L+N    A  +    ++
Sbjct: 365 PNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQL 424

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M   G+  D+ SYN L+   C  G    A +++   K++   G L  D+ TYS ++ 
Sbjct: 425 FNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLF---KNMLTNGNLP-DLCTYSILLD 480

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F    +   A ++   M S  + PN + ++ LI+A   +  +++A  LF E+   G +P
Sbjct: 481 GFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQP 540

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRS 458
           N Q    ++    +    D A   FR+
Sbjct: 541 NVQIYTTIINGLCKEGLLDEALEAFRN 567



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 115/281 (40%), Gaps = 60/281 (21%)

Query: 291 IYVFNSLMNV-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
           I  FN L++      + HD   +L   K M+  G+  D  + ++L+          L   
Sbjct: 121 IIQFNKLLSAIVKMRHYHDAVISLS--KQMELAGLSPDTYTLHMLINCFFQLQRVDLGFS 178

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +  ++  L     L+L + T++T++        +  A+++ +DM++ G  P+  T++++I
Sbjct: 179 VLAKIIKLG----LQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTII 234

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           N     G    A  LF +M +AGC+P+    + ++ +  +  + + A  +F         
Sbjct: 235 NGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIF--------- 285

Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525
                                                 S+ K     P   TYN L++  
Sbjct: 286 --------------------------------------SYMKAKGISPNIFTYNSLIQGL 307

Query: 526 C--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           C  + +    A++NEM ++ + PN +++++LI+     GNV
Sbjct: 308 CNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNV 348



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 120/282 (42%), Gaps = 40/282 (14%)

Query: 110 MLSLEMVASGIVKSI------REGRIDCVVGVLKKLNELGVAP-----LELFDGSGFKLL 158
           M+SL ++ + +  S+      +EG +    GVLK + E+GV P       L +G   +  
Sbjct: 323 MMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAE 382

Query: 159 KNECQRLLD---SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK---PDV---NL 209
             E ++L D   +   +  V    +L       K + E  ++    +++   PD+   N 
Sbjct: 383 VVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNT 442

Query: 210 AIRYACIVPR---ADILFCNFVRE---------------FGKKRDLVSALRAYDASKKHL 251
            I   C + R   A  LF N +                 F K+  L  A R + A +   
Sbjct: 443 LIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTY 502

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTL 309
             PNM +   +ID      +  ++R ++ +L  Q +  N+ ++ +++N    +  L   L
Sbjct: 503 LKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEAL 562

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           E ++NM++ G   +  SYN++++      +   A ++ GE++
Sbjct: 563 EAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMR 604


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 132/333 (39%), Gaps = 49/333 (14%)

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC---- 335
           + ++    N  +FNSL++   N  D  +  ++   M   G       YNI + + C    
Sbjct: 168 MMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEK 227

Query: 336 LAGNTVL--AQEIYGE--------------------------------VKHLEAKGVLKL 361
           L    +L  A++IYGE                                +K +  KG +  
Sbjct: 228 LPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP- 286

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D  TYS ++     A   + A  + ++M   GVTP+  T++ LI++   AGL+EQA  LF
Sbjct: 287 DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLF 346

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDG--NT 476
           EEM   GC P       L+ A ++A Q  +A  +F            V  G   DG    
Sbjct: 347 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 406

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKA 534
             IS    +    +  T +   +  Y   + R +  P   TY  L+   C  +       
Sbjct: 407 GNISK-AFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 465

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           L++ M + G  PNHI +  LID    +G ++ A
Sbjct: 466 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSA 498



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 137/335 (40%), Gaps = 69/335 (20%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++Y    +ID     G   +++ ++E++RS   +  +  + +L++  + A  +    +
Sbjct: 320 TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAND 379

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL------------EAKGV 358
           ++  M   G   +  +Y  L+   C AGN   A E+Y ++               E +  
Sbjct: 380 IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHT 439

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
           L  +V TY  +V     A     A ++ + MLS+G  PN I + +LI+    AG ++ A 
Sbjct: 440 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 499

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD- 477
            +F +M + G  P+      L+         DR F+                  DG  D 
Sbjct: 500 EVFLQMTKCGYLPSVHTYTSLI---------DRMFK------------------DGRLDL 532

Query: 478 --RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA- 534
             ++ +   KD    + TPN V                   TY  ++   C      KA 
Sbjct: 533 AMKVLSQMLKD----SCTPNVV-------------------TYTAMIDGLCRIGESEKAL 569

Query: 535 -LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            L++ M   G SPN +++T LID  G +G ++ +L
Sbjct: 570 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 604



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  + +L++    AH +    E+   M   G   +   Y+ L+   C AG    AQE++
Sbjct: 443 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 502

Query: 348 GEVKHLEAKGVLKLDVFTYSTIV-KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
            ++      G L   V TY++++ ++F D +   +A+KV   ML    TPN +T++++I+
Sbjct: 503 LQMTKC---GYLP-SVHTYTSLIDRMFKDGRL-DLAMKVLSQMLKDSCTPNVVTYTAMID 557

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
                G  E+A+ L   M + GC PN      L+    +A + D +  LF
Sbjct: 558 GLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 607



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 96/213 (45%), Gaps = 10/213 (4%)

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN-- 299
           +    +H  +PN+     ++D  G+C  +    A  + + + S     N  V+++L++  
Sbjct: 432 FPCEDRHTLAPNVVTYGALVD--GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 489

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
             A  +    EV+  M K G +  + +Y  L+      G   LA ++  ++     K   
Sbjct: 490 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM----LKDSC 545

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             +V TY+ ++         + ALK+   M   G +PN +T+++LI+    AG ++ ++ 
Sbjct: 546 TPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLD 605

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           LF +M + GC PN     +L+     A   D+A
Sbjct: 606 LFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKA 638



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 107/227 (47%), Gaps = 14/227 (6%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           A++      K   +PN+     +ID  G+C  G+  K+  +   +  +  + N+  + +L
Sbjct: 533 AMKVLSQMLKDSCTPNVVTYTAMID--GLCRIGESEKALKLLSLMEEKGCSPNVVTYTAL 590

Query: 298 MNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++    A  +  +L+++  M + G   +  +Y +L+   C AG    A+ + GE+K    
Sbjct: 591 IDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYW 650

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
              L+     Y   ++ F+  K +  +L + E+M S G  P    +  LI+  + AG +E
Sbjct: 651 PKYLQ----GYRCAIQGFS--KSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLE 704

Query: 416 QAMHLFEEMLQ--AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
            AM L +EM++  +  + ++     L+QA   A Q + AFRL+   T
Sbjct: 705 IAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMT 751



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 114/307 (37%), Gaps = 40/307 (13%)

Query: 294 FNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L+ V  +A  +     V K M + G   D  +      A C  G        + +  
Sbjct: 43  YNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR-------WADAL 95

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            +  +   KLD    + ++    +A ++  A+     M      PN +T+ +L++     
Sbjct: 96  DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKK 155

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL--- 468
             +     +   M+  GC PN    N L+ +      +  A++L    T           
Sbjct: 156 KQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVY 215

Query: 469 --------GEDYDGNTDRISNMEHKDKQSIT--------NTPNFVPN-SHYSSFDKRF-- 509
                   G++   + D +   E    + +         N  NF         FDK F  
Sbjct: 216 NIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQL 275

Query: 510 -------SFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560
                   F P T+TY+ ++   C  T   +   L  EM+ VG++P+  ++TILID+   
Sbjct: 276 IKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCK 335

Query: 561 SGNVEGA 567
           +G +E A
Sbjct: 336 AGLIEQA 342



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 10/177 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTL 309
           PN  +   +ID  G C  G    ++ ++  +       +++ + SL++    D  L   +
Sbjct: 477 PNHIVYDALID--GFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAM 534

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V   M K     ++ +Y  ++   C  G +  A ++   +  +E KG    +V TY+ +
Sbjct: 535 KVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKL---LSLMEEKGC-SPNVVTYTAL 590

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +     A    ++L +   M   G +PN +T+  LIN    AGL+++A  L  EM Q
Sbjct: 591 IDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQ 647


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 167/355 (47%), Gaps = 32/355 (9%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           AL  +   K+   +P   +   ++DV G  G  + +  A+ E++R+  V  + +  ++++
Sbjct: 206 ALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLEEMRAAGVEPDGFTASTVI 265

Query: 299 NVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                D  +   +  +++++  G +  + +YN LL+    AGN + A  +   +K +E  
Sbjct: 266 AACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRV---LKEMEES 322

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  K D  TY+ +   +A A +++ A K  + M+S G+ PN  T+++++ A  NAG V++
Sbjct: 323 GC-KPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDE 381

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS---------KTQVA 467
           A+ LF+ M + G  P     N++L    +  +F+    +    + S          T +A
Sbjct: 382 ALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLA 441

Query: 468 L--GEDYDGNTDRI-SNMEHKDKQSITNTPNFVPNSH---------YSSFDKRFS--FKP 513
           +      +G   R+   M+    +   +T N + +++         +  +D+  +  F P
Sbjct: 442 VCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTP 501

Query: 514 TTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
             TTYN L+       D+   ++++N+M+  G  PN +S+++L+      GN  G
Sbjct: 502 CLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAG 556



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 129/311 (41%), Gaps = 57/311 (18%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQK 317
           T++      G Y ++  ++ +L+ + V     ++N +++V           + + + M+ 
Sbjct: 192 TVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLEEMRA 251

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            GV  D  + + ++ AC   G   L  E     + L+++G +   V TY+ +++VF  A 
Sbjct: 252 AGVEPDGFTASTVIAAC---GRDGLVDEAVAFFEDLKSRGHVPC-VVTYNALLQVFGKAG 307

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
            +  AL+V ++M  +G  P+ +T++ L  + A AG  E+A    + M+  G  PN+   N
Sbjct: 308 NYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYN 367

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
            ++ A   A + D A  LF  W                                      
Sbjct: 368 TIMTAYGNAGKVDEALALF-DWM------------------------------------- 389

Query: 498 PNSHYSSFDKRFSFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
                    K+  F P   TYN++  M    + +  +  ++ EM   G +PN ++W  ++
Sbjct: 390 ---------KKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTML 440

Query: 556 DACGGSGNVEG 566
             CG  G +EG
Sbjct: 441 AVCGKRG-MEG 450



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 98/506 (19%), Positives = 200/506 (39%), Gaps = 92/506 (18%)

Query: 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185
           EGR +  + +  +L   GVAP  +     + ++ +   R+  S     +  ++ +LEE R
Sbjct: 200 EGRYERALELFAELKREGVAPTHVM----YNVMLDVYGRMGRS-----WPQIVAMLEEMR 250

Query: 186 LPVKELD--EEFRIVQLCVNKPDVNLAIRY----------ACIVPRADILFCNFVREFGK 233
               E D      ++  C     V+ A+ +           C+V      +   ++ FGK
Sbjct: 251 AAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVV-----TYNALLQVFGK 305

Query: 234 KRDLVSALRA----------------------------YDASKKHLSS-------PNMYI 258
             + + ALR                             Y+ + K L +       PN + 
Sbjct: 306 AGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFT 365

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQ 316
             TI+   G  G   ++ A+++ ++       +  +N ++ +     +F   LE+   M 
Sbjct: 366 YNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMS 425

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           + G   +  ++N +L  C   G   +   +   ++ +++ GV +L   T++T++  +   
Sbjct: 426 RSGCTPNRVTWNTMLAVC---GKRGMEGYVTRVLERMKSCGV-ELCRDTFNTLISAYGRC 481

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A K+ ++M +AG TP   T+++L++  +  G    A  +  +M   G +PN    
Sbjct: 482 GSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSY 541

Query: 437 NILLQ--------ACVEACQFD-RAFRLFRSWTLSKTQVALG------EDYDGNTDRISN 481
           ++LLQ        A +EA + +     +F SW + +T V         E  +     +  
Sbjct: 542 SLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVMA 601

Query: 482 MEHKDKQSITNT--PNFVPNSHYSS----FD--KRFSFKPTTTTYNILMK--ACCTDYYR 531
             HK    I N+    +  N  Y      FD  K+    P   TYN +M   A   + + 
Sbjct: 602 RGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWE 661

Query: 532 VKALMNEMRTVGLSPNHISWTILIDA 557
            + ++  ++T  L P+ +S+  +++ 
Sbjct: 662 AEKILKRLKTSQLKPDVVSYNTVMNG 687



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 99/201 (49%), Gaps = 6/201 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P+  I RT++     C         ++++ ++    ++ +FNS++++ A +  +    E+
Sbjct: 571 PSWVILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEM 630

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           + ++++ G+  D+ +YN ++     +  +  A++I   +K  +    LK DV +Y+T++ 
Sbjct: 631 FDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQ----LKPDVVSYNTVMN 686

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F      + A ++  +M++ GV P  +T+ +L+   A+  +  +A  +   M+Q    P
Sbjct: 687 GFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSP 746

Query: 432 NSQCCNILLQACVEACQFDRA 452
                  ++ +  +A +FD A
Sbjct: 747 MELTYRRVVDSYCKAKRFDEA 767



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 111/241 (46%), Gaps = 10/241 (4%)

Query: 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
             + P   IL    +  F K R L    RA+         P++ I  +++ +    G Y 
Sbjct: 567 GTVFPSWVILRTLVISNF-KCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYR 625

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG---VMADMASYNIL 330
           K+  +++ ++   ++ ++  +NS+M++ A   + + E  K +++L    +  D+ SYN +
Sbjct: 626 KAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNE-SWEAEKILKRLKTSQLKPDVVSYNTV 684

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +   C  G    AQ I  E   + A GV +  V TY T+V  +A  + +  A +V   M+
Sbjct: 685 MNGFCKQGLIKEAQRILSE---MIADGV-RPCVVTYHTLVGGYASREMFSEAREVVSYMI 740

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
              ++P  +T+  ++++   A   ++A     E+ +     + +  +  L A VE+ QF 
Sbjct: 741 QRNLSPMELTYRRVVDSYCKAKRFDEARGFLYEIAETDRNSDQKLLST-LTARVESAQFR 799

Query: 451 R 451
           R
Sbjct: 800 R 800


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 40/298 (13%)

Query: 286 NVTLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           NV L++Y F  ++     V   D  F  EV   M+++G+  ++  Y  L+  CC  G+  
Sbjct: 146 NVKLDVYSFGIMIKGCCEVGYLDKGF--EVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIE 203

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
             ++++ ++  L+       + +TY+ ++  F      +  +++ E M   G+ PN  T+
Sbjct: 204 RGKQLFYKMGELDVVA----NQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTY 259

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL---FRS 458
           +S+I  C N G +  A  LF+EM + G   N    N L+    +  +   A RL    + 
Sbjct: 260 NSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKR 319

Query: 459 WTLSKTQVALGEDYD-----GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
             LS   ++     D     GN D+ S++ ++ K S                       P
Sbjct: 320 DGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSS--------------------GQSP 359

Query: 514 TTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +  TYNIL+       +   V  ++ EM   GLSP+ +++TIL+DA   S N+E A Q
Sbjct: 360 SLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQ 417



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 143/328 (43%), Gaps = 35/328 (10%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN+ +  T+ID C   GD  + + ++  +   +V  N Y +  L+N        K  +E
Sbjct: 183 SPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE 242

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +Y+ M+  G++ ++ +YN ++  CC  G    A E++ E++    +GV   +V TY+T++
Sbjct: 243 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRE---RGV-ACNVVTYNTLI 298

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 +    A ++   M   G++PN I++++LI+   + G +++A  LF +M  +G  
Sbjct: 299 GGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQS 358

Query: 431 PNSQCCNILLQACVEA---CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
           P+    NIL+    EA          R   +  LS ++V      D    R  N+E   +
Sbjct: 359 PSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALV-RSDNIEKAFQ 417

Query: 488 -QSITNTPNFVPNSH---------------------YSSFDKRFSFKPTTTTYNILMKAC 525
             S       V + +                     + S D+    KP    YN ++   
Sbjct: 418 IYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDE-MHLKPNDVIYNTMIYGY 476

Query: 526 CTD--YYRVKALMNEMRTVGLSPNHISW 551
           C +   YR   L+ EM   G+ PN  S+
Sbjct: 477 CKEGSSYRALRLLKEMGENGMVPNVASY 504



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/341 (20%), Positives = 142/341 (41%), Gaps = 41/341 (12%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           + G K+D    +  Y+  K     PN+Y   ++I  C   G    +  +++++R + V  
Sbjct: 233 KMGLKKD---GIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVAC 289

Query: 290 NIYVFNSLMNVNAHDLKFTLEVYK---NMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           N+  +N+L+     + +  LE  +    M++ G+  ++ SYN L+   C  GN   A  +
Sbjct: 290 NVVTYNTLIGGLCQERR-VLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSL 348

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
           + ++K       L     TY+ ++  F++AK       +  +M + G++P+ +T++ L++
Sbjct: 349 FNQMKSSGQSPSLA----TYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMD 404

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           A   +  +E+A  ++  M +AG   +     +L+           A +LF+S        
Sbjct: 405 ALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKS-------- 456

Query: 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK--------PTTTTY 518
                       +  M  K    I NT  +      SS+      K        P   +Y
Sbjct: 457 ------------LDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASY 504

Query: 519 NILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
           N  +   C D  +   + L+ +M  +GL P+   W ++  A
Sbjct: 505 NSTIXILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISKA 545



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 18/218 (8%)

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
           E KG +KLDV+++  ++K   +  +     +V   M   G++PN + +++LI+ C   G 
Sbjct: 142 ETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGD 201

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
           +E+   LF +M +     N     +L+               F    L K  + L E   
Sbjct: 202 IERGKQLFYKMGELDVVANQYTYTVLING-------------FFKMGLKKDGIELYEKMK 248

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILMKACCTDYYR 531
             T  + N+   +        +   N+ +  FD  +         TYN L+   C +   
Sbjct: 249 -LTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRV 307

Query: 532 VKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           ++A  LM  M+  GLSPN IS+  LID     GN++ A
Sbjct: 308 LEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKA 345


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 151/336 (44%), Gaps = 44/336 (13%)

Query: 249 KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLK 306
           + L +PN++    +ID     G+  ++R+++  ++      ++  FNSL++      +L 
Sbjct: 181 EQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELD 240

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
              ++ + M++ G  AD+ +YN L+   C  G     +  YG    ++ +GV+  +V T+
Sbjct: 241 EVEQLVEEMRRSGCKADVVTYNALINCFCKFGRM---ETAYGYFAAMKREGVMA-NVVTF 296

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           ST V  F      + A+K+   M   G+  N  T++ LI+    AG ++ A+ L +EM++
Sbjct: 297 STFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVR 356

Query: 427 AGCEPNSQCCNILLQA-CVE--ACQFDRAFRLF-----RSWTLSKTQVALGEDYDGNTDR 478
            G   N     +L+   C E    + +   R+      R+  L  T +  G   + N+++
Sbjct: 357 QGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEK 416

Query: 479 ----ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RV 532
               +S M++K                          +   + Y  L++  C  +     
Sbjct: 417 ALGLLSEMKNK------------------------GLELDISLYGALIQGLCNVHKLDEA 452

Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           K+L+ +M   GL PN+I +T ++DAC  SG V  A+
Sbjct: 453 KSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAI 488



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 6/222 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F  FV  F K+  +  A++ +   +    + N +    +ID     G    +  + ++
Sbjct: 294 VTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDE 353

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q V LN+  +  L++    + K     +V + M+K GV A+   Y  L+    +  N
Sbjct: 354 MVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKN 413

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           +  A  +  E+K+   KG L+LD+  Y  +++   +      A  +   M  +G+ PN I
Sbjct: 414 SEKALGLLSEMKN---KG-LELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYI 469

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
            ++++++AC  +G V +A+ + +++L +G +PN+ C N  +Q
Sbjct: 470 IYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQ 511



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/244 (20%), Positives = 106/244 (43%), Gaps = 13/244 (5%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           FC F R       + +A   + A K+     N+    T +D     G   ++  ++  +R
Sbjct: 268 FCKFGR-------METAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMR 320

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            + + LN + +  L++    A  L   + +   M + GV  ++ +Y +L+   C      
Sbjct: 321 VRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVA 380

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A+++   ++ +E  GV + +   Y+T++      K  + AL +  +M + G+  +   +
Sbjct: 381 EAEDV---LRMMEKAGV-RANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLY 436

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
            +LI    N   +++A  L  +M ++G EPN      ++ AC ++ +   A  + +    
Sbjct: 437 GALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILD 496

Query: 462 SKTQ 465
           S  Q
Sbjct: 497 SGFQ 500


>gi|168030898|ref|XP_001767959.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680801|gb|EDQ67234.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 957

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 154/343 (44%), Gaps = 37/343 (10%)

Query: 135 VLKKLNELGVAPLELFDGSGFKLLKNE---------CQRLLDSG------EVEMF-VGL- 177
           +L ++ E GV P E   GS  KL  N           Q + D G      E EMF +G  
Sbjct: 443 LLAEMRESGVKPDEYIYGSFVKLYCNSDMIDKATMVVQEMKDDGLESVCNEREMFPLGQA 502

Query: 178 ------MEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231
                  ++L +  +   E  E  R  +L ++K    L     CIV  A +L  N    +
Sbjct: 503 LQSPIDTQILNQLLIKRAEAGE-LREAELLLDK----LVEAGGCIVDTAAVLMINL---Y 554

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           G++     A   +++ +K    P++Y+  T+I +C +C +  ++  +++ +       + 
Sbjct: 555 GRRGLFQKAKSLFNSLQKKDHPPSLYVYNTMIKLCAVCKELEEAIFVFDRMEENGRMFDA 614

Query: 292 YVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
              + L++    + +F     + K  +K+GV  D  +YN  LKA   +GN   A E+YGE
Sbjct: 615 VTVSILVHAYTKEGRFKDAAGLMKRAKKVGVAMDTVAYNTSLKANLKSGNLKGALEVYGE 674

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           ++  + +   K    TY+ ++ +F+       A++  E + S+ V  + I +S +I+   
Sbjct: 675 MQEADIEPSAK----TYTILISLFSKLGDLGRAVQAFEVLNSSEVGADEIAYSQMIHCYG 730

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            AG  ++A  LF+EM   G +PN    N LL A   A  F  A
Sbjct: 731 CAGRPKEAADLFQEMETKGFKPNEVIYNNLLDAFARAGLFAEA 773



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 18/231 (7%)

Query: 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYIC 259
           L V K + N  + YA I+        + + + G+  D V   +   A+  HL  P+  + 
Sbjct: 203 LLVEKLEPNFVL-YAIII--------HILNKEGRTEDAVHTFKDMRAAG-HL--PDELLY 250

Query: 260 RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQK 317
            TII   G  G Y +S A+Y D++ Q +  + + +  ++NV +   +F    E    MQ+
Sbjct: 251 NTIICALGKLGRYQESEALYLDMKKQGIVPSKFTYTIMINVWSKAGRFASAAETLAEMQR 310

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            G +AD   Y  ++     AG    A++I+ E+  L   G+L  +  +Y+++ KV A+A 
Sbjct: 311 SGCIADEVVYCSIINMYGKAGLYEEAEKIFKEMDTL---GLLSHEK-SYTSMAKVRAEAG 366

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
               ALK+ + M   G+    +TW++L++     G VEQA  ++ +M++AG
Sbjct: 367 RHAEALKLFDVMAEKGLLTTRMTWNTLLHCFVRIGDVEQATKVYNDMVEAG 417



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 105/218 (48%), Gaps = 6/218 (2%)

Query: 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300
           L  Y+A ++    P+ ++ RT+I        +  +  ++EDL  + +  N  ++  ++++
Sbjct: 162 LEFYEAMRQRGLVPSAHVYRTMIVTLYKAERHSDALMLWEDLLVEKLEPNFVLYAIIIHI 221

Query: 301 NAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358
              + +    +  +K+M+  G + D   YN ++ A    G    ++ +Y ++K    +G+
Sbjct: 222 LNKEGRTEDAVHTFKDMRAAGHLPDELLYNTIICALGKLGRYQESEALYLDMKK---QGI 278

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
           +    FTY+ ++ V++ A  +  A +   +M  +G   + + + S+IN    AGL E+A 
Sbjct: 279 VP-SKFTYTIMINVWSKAGRFASAAETLAEMQRSGCIADEVVYCSIINMYGKAGLYEEAE 337

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            +F+EM   G   + +    + +   EA +   A +LF
Sbjct: 338 KIFKEMDTLGLLSHEKSYTSMAKVRAEAGRHAEALKLF 375



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 87/179 (48%), Gaps = 10/179 (5%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKL 318
           +II++ G  G Y ++  I++++ +  +  +   + S+  V A   +    L+++  M + 
Sbjct: 322 SIINMYGKAGLYEEAEKIFKEMDTLGLLSHEKSYTSMAKVRAEAGRHAEALKLFDVMAEK 381

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G++    ++N LL      G+   A ++Y ++  +EA      +V TY  ++ +++  + 
Sbjct: 382 GLLTTRMTWNTLLHCFVRIGDVEQATKVYNDM--VEAGSA---NVVTYGNMINLYSKFQM 436

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
            + A  +  +M  +GV P+   + S +    N+ ++++A  + +EM   G E     CN
Sbjct: 437 VEDAENLLAEMRESGVKPDEYIYGSFVKLYCNSDMIDKATMVVQEMKDDGLE---SVCN 492



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 83/209 (39%), Gaps = 14/209 (6%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V  Y+T++ ++  A    +A +   +ML AGV P+ +    ++ A A     +  +  +E
Sbjct: 107 VIAYTTLLGIYGQAGKLTLAEETLSEMLDAGVEPDEVAGGCMLEAYARWERYDTLLEFYE 166

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
            M Q G  P++     ++    +A +   A  L+    + K +             I N 
Sbjct: 167 AMRQRGLVPSAHVYRTMIVTLYKAERHSDALMLWEDLLVEKLEPNF--VLYAIIIHILNK 224

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMR 540
           E + + ++    +     H           P    YN ++ A      Y   +AL  +M+
Sbjct: 225 EGRTEDAVHTFKDMRAAGHL----------PDELLYNTIICALGKLGRYQESEALYLDMK 274

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQ 569
             G+ P+  ++TI+I+    +G    A +
Sbjct: 275 KQGIVPSKFTYTIMINVWSKAGRFASAAE 303


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 110/520 (21%), Positives = 218/520 (41%), Gaps = 93/520 (17%)

Query: 67  LSSRNDYYADMASKLAKDGRLEEFAMIVESVV--VSEGNVSKFASMLSLEMVASGIVKSI 124
           +   N  Y  + S L ++G+++E   ++E +   +   N+  + ++L             
Sbjct: 552 IEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLS--------- 602

Query: 125 REGRIDCVVGVLKKLNELGVAP-LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183
           + G ++C + +L  + E G AP L  ++   + L+K E  RL ++    MF  + ++L  
Sbjct: 603 KNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEE--RLEEA--FRMFCQMKKILAP 658

Query: 184 FRLPVKELDEEFRIVQLCVNKPDVNLAIRY----ACIVPRADILFCNFVREFGKKRDLVS 239
               +  +   F  V+  + K  ++    Y     C V ++   F + +    KK  +  
Sbjct: 659 DYATLCTILPSF--VKNGLMKEALHTVKEYILKAGCNVDKSS--FHSLMEGILKKAGVEK 714

Query: 240 ALR-AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           ++  A + + + +   + ++C  I  +C      +++  ++   +   V+L    +NSL+
Sbjct: 715 SIEFAENIASRGILLNDFFLCPLIRHLCK-HKKALEAHQLFNKFKGLGVSLKTGSYNSLI 773

Query: 299 N--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
              V+ + +    +++  M++LG   D  +YN++L A    G ++  +E+    K +  K
Sbjct: 774 RGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDA---MGKSMRVEEMLKVQKEMHRK 830

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G     V TY+TI+     +K  + A+ +  +++S G +P   T+  L++    +G +  
Sbjct: 831 GYESTYV-TYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVD 889

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476
           A +LF EML+ GCEPN    NILL                            G    GNT
Sbjct: 890 AENLFNEMLEYGCEPNCTIYNILLN---------------------------GHRIAGNT 922

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD-------- 528
           + +  +  K  +   N                    P   +Y IL+   CT         
Sbjct: 923 ENVCQLFEKMVEQGIN--------------------PDIKSYTILIDTLCTAGRLNDGLC 962

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           Y+R      ++  +GL P+ I + +LID  G S  +E A+
Sbjct: 963 YFR------QLHELGLEPDLIVYNLLIDGLGKSERIEEAV 996



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/351 (19%), Positives = 153/351 (43%), Gaps = 55/351 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   + + G   D  S +  ++A      + N+     ++D     G   ++ A++++
Sbjct: 312 VTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDE 371

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++ + ++   Y +NSL++  + A      LE++ +M   G   +  ++ + +     +G 
Sbjct: 372 MKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQ 431

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           ++ A + Y   +H+++KG++  DV   + ++   A +    MA +V  ++ + GV+P+TI
Sbjct: 432 SLKAIQRY---EHMKSKGIVP-DVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTI 487

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++ +I  C+ A   ++AM+ F +M+++GC P+    N L+    +  + + A++LF   
Sbjct: 488 TYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLF--- 544

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                   HK K+                       +PT  TYN
Sbjct: 545 ------------------------HKLKE--------------------MKIEPTNGTYN 560

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            L+     +     V  L+ EM      PN I++  ++D    +G V  A+
Sbjct: 561 TLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAI 611



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 145/334 (43%), Gaps = 22/334 (6%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A+  Y A  +   SP++     ++   G   D      +  ++ ++ V  N+Y +   + 
Sbjct: 190 AMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIR 249

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
           V     +F     +   M+  G   D+ ++ ++++  C AG    A+ ++ ++K  + K 
Sbjct: 250 VLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKP 309

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
               D  TY T++    D+   Q  ++V   M++ G   N ++++++++A    G V++A
Sbjct: 310 ----DRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEA 365

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
           + +F+EM + G  P     N L+   ++A  FDRA  LF          A G   +G T 
Sbjct: 366 LAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMN------ACGPSPNGYTH 419

Query: 478 RI-SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKA 534
            +  N   K  QS+     +    H     K     P     N ++   A        K 
Sbjct: 420 VLFINYYGKSGQSLKAIQRY---EHM----KSKGIVPDVAAANAVLYSLAGSGRLGMAKR 472

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           +  E++ +G+SP+ I++T++I  C  +   + A+
Sbjct: 473 VFYELKAMGVSPDTITYTMMIKCCSKASKADEAM 506



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 148/360 (41%), Gaps = 41/360 (11%)

Query: 225 CNFVREFGKKRDLVSAL-RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           CN++ E  +    V  + + +D  +K +   N+    TI    G+ G    +      +R
Sbjct: 104 CNYMLELMRAHGRVGDMAQVFDLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMR 163

Query: 284 SQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
              ++LN Y +N L+     +  D +  +EVYK M + G+   + +Y++L+ A    G  
Sbjct: 164 EAGMSLNAYTYNGLIYFLVKSGFDAE-AMEVYKAMVEDGISPSVRTYSVLMVAF---GKK 219

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
                +   +  +EA+GV K +V++Y+  ++V   A  +  A  +   M  +G  P+ +T
Sbjct: 220 RDVDTVLWLLNEMEARGV-KPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVT 278

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
            + +I    +AG +  A  +F +M  +  +P+      LL  C ++        ++ +  
Sbjct: 279 HTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNA-- 336

Query: 461 LSKTQVALGED-----YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSFKP 513
                VA G +     Y    D +  +   D+               + FD  K     P
Sbjct: 337 ----MVADGYNDNIVSYTAVVDALCQVGRVDEA-------------LAVFDEMKEKGMSP 379

Query: 514 TTTTYNIL----MKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              +YN L    +KA   D  R   L N M   G SPN  +  + I+  G SG    A+Q
Sbjct: 380 EQYSYNSLISGFLKADMFD--RALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQ 437



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 98/203 (48%), Gaps = 6/203 (2%)

Query: 233  KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
            K   +V A   ++   ++   PN  I   +++   I G+      ++E +  Q +  +I 
Sbjct: 883  KSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIK 942

Query: 293  VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
             +  L++    A  L   L  ++ + +LG+  D+  YN+L+     +     A  ++ E+
Sbjct: 943  SYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEM 1002

Query: 351  KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
            K    KG++  +++TY++++     A     A ++ E++L  G  P+  T+++LI   + 
Sbjct: 1003 KK---KGIIP-NLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSV 1058

Query: 411  AGLVEQAMHLFEEMLQAGCEPNS 433
            +G  + A   + +M+  GC+PNS
Sbjct: 1059 SGSTDNAYAAYGQMIVGGCQPNS 1081



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 8/211 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN Y     I+  G  G  +K+   YE ++S+ +  ++   N+++     +  L     
Sbjct: 413 SPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKR 472

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE-VKHLEAKGVLKLDVFTYSTI 369
           V+  ++ +GV  D  +Y +++K C  A     A   + + V+      VL L+     T+
Sbjct: 473 VFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLI-DTL 531

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
            K     + WQ+  K+KE      + P   T+++L++     G V++ M L EEM +   
Sbjct: 532 YKGGKGNEAWQLFHKLKE----MKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIY 587

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
            PN    N +L    +  + + A  +  S T
Sbjct: 588 PPNLITYNTVLDCLSKNGEVNCAIDMLYSMT 618



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 92/198 (46%), Gaps = 6/198 (3%)

Query: 270  GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASY 327
            G  + +  ++ ++       N  ++N L+N +  A + +   ++++ M + G+  D+ SY
Sbjct: 885  GKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSY 944

Query: 328  NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             IL+   C AG        + ++  L     L+ D+  Y+ ++     ++  + A+ +  
Sbjct: 945  TILIDTLCTAGRLNDGLCYFRQLHELG----LEPDLIVYNLLIDGLGKSERIEEAVSLFN 1000

Query: 388  DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            +M   G+ PN  T++SLI     AG   +A  ++EE+L+ G +P+    N L++    + 
Sbjct: 1001 EMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSG 1060

Query: 448  QFDRAFRLFRSWTLSKTQ 465
              D A+  +    +   Q
Sbjct: 1061 STDNAYAAYGQMIVGGCQ 1078


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 146/333 (43%), Gaps = 31/333 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +PN+ +  ++ID     GD  ++ A++ +L    V+ +++ ++ L+    +    +    
Sbjct: 319 TPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGN 378

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +++ M K G++A+  +YN L+  CC  G    A EI      +   GV + +V T+ST++
Sbjct: 379 IFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEI---CSQMTENGV-EPNVITFSTLI 434

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +   +  Q A+ +  +M+   ++P+ +T++++I+     G +++A+ L+ +ML  G  
Sbjct: 435 DGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGIT 494

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN    + LL    +  +   A  LF             E  +  T R +      K S+
Sbjct: 495 PNCYTISCLLDGLCKDGKISDALELFT------------EKIEFQTPRCNVDAGGSKPSL 542

Query: 491 TNTPNFVPNSHYSSFD-------------KRFSFKPTTTTYNILMKACCTDYYRVKALMN 537
           TN   +    H    D             +R+  +P    Y ++++      Y +  L  
Sbjct: 543 TNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYILMMLHA 602

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           +M   G+ PN     IL +    SG ++ A  C
Sbjct: 603 DMLKFGVIPNSAVHVILCECYQESGFLKSAQNC 635



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 160/387 (41%), Gaps = 49/387 (12%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC- 269
           +R   IVP   I++   +R       +  A   + A ++    PN+Y   T++D  G C 
Sbjct: 208 MRVKGIVPTV-IVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMD--GYCK 264

Query: 270 -GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMAS 326
             +  ++  +Y+D+  + +  ++  F  L++      ++K    ++ NM K  V  ++A 
Sbjct: 265 LANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAV 324

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN L+ A C  G+   A  ++ E++  E       DVFTYS +++        + A  + 
Sbjct: 325 YNSLIDAYCKVGDVSEAMALFLELERFEVSP----DVFTYSILIRGLCSVSRTEEAGNIF 380

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           E M   G+  N++T++SLI+ C   G +++A+ +  +M + G EPN    + L+    + 
Sbjct: 381 EKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKI 440

Query: 447 CQFDRAFRLFRSW---TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
                A  ++      +LS   V      DG+    S  E     S        PN +  
Sbjct: 441 RNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTI 500

Query: 504 S------------------FDKRFSF------------KPTTT---TYNILMKACCTD-- 528
           S                  F ++  F            KP+ T    Y  L+   C D  
Sbjct: 501 SCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQ 560

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILI 555
           + +   L ++MR  GL P+ + + +++
Sbjct: 561 FSKAVKLFSDMRRYGLQPDEVIYVVML 587



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 150/332 (45%), Gaps = 20/332 (6%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301
           R Y+    +  SP++    T+ID C   GD ++++ +++++R + +   + V+  L+   
Sbjct: 168 RIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGL 227

Query: 302 AHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
             D K      +++ M+++GV  ++ +YN L+   C   N   A  +Y   + +  +G++
Sbjct: 228 CSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLY---QDMLGEGLV 284

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             DV T+  ++         + A  +  +M+   VTPN   ++SLI+A    G V +AM 
Sbjct: 285 P-DVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMA 343

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           LF E+ +    P+    +IL++      + + A  +F   T  +  +A    Y+   D  
Sbjct: 344 LFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMT-KEGILANSVTYNSLIDGC 402

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMN 537
              E K  +++        N            +P   T++ L+   C   +      + +
Sbjct: 403 CK-EGKMDKALEICSQMTEN----------GVEPNVITFSTLIDGYCKIRNLQAAMGIYS 451

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           EM    LSP+ +++T +ID     G+++ AL+
Sbjct: 452 EMVIKSLSPDVVTYTAMIDGHCKYGSMKEALK 483



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 102/264 (38%), Gaps = 62/264 (23%)

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE--- 423
           + ++ V      +++  ++ E+M+S G++P+ IT+ +LI+ C   G + +A  +F+E   
Sbjct: 151 NVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRV 210

Query: 424 --------------------------------MLQAGCEPNSQCCNILLQACVEACQFDR 451
                                           M + G  PN    N L+    +     +
Sbjct: 211 KGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQ 270

Query: 452 AFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHK-----DKQSITNTPNF-VPNSHY 502
           A RL++      L    V  G   DG   +   M+       +    + TPN  V NS  
Sbjct: 271 ALRLYQDMLGEGLVPDVVTFGILIDGLC-KFGEMKAARNLFVNMIKFSVTPNIAVYNSLI 329

Query: 503 SSFDK---------------RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
            ++ K               RF   P   TY+IL++  C+     +A  +  +M   G+ 
Sbjct: 330 DAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGIL 389

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
            N +++  LID C   G ++ AL+
Sbjct: 390 ANSVTYNSLIDGCCKEGKMDKALE 413



 Score = 39.3 bits (90), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 25/213 (11%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           I F   +  + K R+L +A+  Y        SP++     +ID  G C  G   ++  +Y
Sbjct: 428 ITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMID--GHCKYGSMKEALKLY 485

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYK----------NMQKLG---VMADM 324
            D+    +T N Y  + L++    D K +  LE++           N+   G    + + 
Sbjct: 486 SDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNH 545

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            +Y  L+   C  G    A +++ +++       L+ D   Y  +++     K+  M L 
Sbjct: 546 VAYTALIHGLCQDGQFSKAVKLFSDMRRYG----LQPDEVIYVVMLRGLFQVKYILMMLH 601

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
              DML  GV PN+     L      +G ++ A
Sbjct: 602 A--DMLKFGVIPNSAVHVILCECYQESGFLKSA 632


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 40/298 (13%)

Query: 286 NVTLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           NV L++Y F  ++     V   D  F  EV   M+++G+  ++  Y  L+  CC  G+  
Sbjct: 159 NVKLDVYSFGIMIKGCCEVGYLDKGF--EVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIE 216

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
             ++++ ++  L+       + +TY+ ++  F      +  +++ E M   G+ PN  T+
Sbjct: 217 RGKQLFYKMGELDVVA----NQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTY 272

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL---FRS 458
           +S+I  C N G +  A  LF+EM + G   N    N L+    +  +   A RL    + 
Sbjct: 273 NSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKR 332

Query: 459 WTLSKTQVALGEDYD-----GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
             LS   ++     D     GN D+ S++ ++ K S                       P
Sbjct: 333 DGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSS--------------------GQSP 372

Query: 514 TTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +  TYNIL+       +   V  ++ EM   GLSP+ +++TIL+DA   S N+E A Q
Sbjct: 373 SLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQ 430



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 143/328 (43%), Gaps = 35/328 (10%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN+ +  T+ID C   GD  + + ++  +   +V  N Y +  L+N        K  +E
Sbjct: 196 SPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE 255

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +Y+ M+  G++ ++ +YN ++  CC  G    A E++ E++    +GV   +V TY+T++
Sbjct: 256 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRE---RGV-ACNVVTYNTLI 311

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 +    A ++   M   G++PN I++++LI+   + G +++A  LF +M  +G  
Sbjct: 312 GGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQS 371

Query: 431 PNSQCCNILLQACVEA---CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
           P+    NIL+    EA          R   +  LS ++V      D    R  N+E   +
Sbjct: 372 PSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALV-RSDNIEKAFQ 430

Query: 488 -QSITNTPNFVPNSH---------------------YSSFDKRFSFKPTTTTYNILMKAC 525
             S       V + +                     + S D+    KP    YN ++   
Sbjct: 431 IYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDE-MHLKPNDVIYNTMIYGY 489

Query: 526 CTD--YYRVKALMNEMRTVGLSPNHISW 551
           C +   YR   L+ EM   G+ PN  S+
Sbjct: 490 CKEGSSYRALRLLKEMGENGMVPNVASY 517



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/341 (20%), Positives = 143/341 (41%), Gaps = 41/341 (12%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           + G K+D    +  Y+  K     PN+Y   ++I  C   G    +  +++++R + V  
Sbjct: 246 KMGLKKD---GIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVAC 302

Query: 290 NIYVFNSLMNVNAHDLKFTLEVYK---NMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           N+  +N+L+     + +  LE  +    M++ G+  ++ SYN L+   C  GN   A  +
Sbjct: 303 NVVTYNTLIGGLCQERR-VLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSL 361

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
           + ++K       L     TY+ ++  F++AK       +  +M + G++P+ +T++ L++
Sbjct: 362 FNQMKSSGQSPSLA----TYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMD 417

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           A   +  +E+A  ++  M +AG   +     +L+           A +LF+S        
Sbjct: 418 ALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKS-------- 469

Query: 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK--------PTTTTY 518
                       +  M  K    I NT  +      SS+      K        P   +Y
Sbjct: 470 ------------LDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASY 517

Query: 519 NILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
           N  ++  C D  +   + L+ +M  +GL P+   W ++  A
Sbjct: 518 NSTIQILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISKA 558



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 18/218 (8%)

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
           E KG +KLDV+++  ++K   +  +     +V   M   G++PN + +++LI+ C   G 
Sbjct: 155 ETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGD 214

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
           +E+   LF +M +     N     +L+               F    L K  + L E   
Sbjct: 215 IERGKQLFYKMGELDVVANQYTYTVLING-------------FFKMGLKKDGIELYEKMK 261

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILMKACCTDYYR 531
             T  + N+   +        +   N+ +  FD  +         TYN L+   C +   
Sbjct: 262 -LTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRV 320

Query: 532 VKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           ++A  LM  M+  GLSPN IS+  LID     GN++ A
Sbjct: 321 LEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKA 358


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 156/363 (42%), Gaps = 39/363 (10%)

Query: 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFN 295
           +SA   Y    +   SPN+Y    +I   G C  G+  K    + ++       N+  +N
Sbjct: 196 LSAEEVYREMIRSRVSPNVYTYNILIR--GFCSVGELQKGLGCFGEMERNGCLPNVVTYN 253

Query: 296 SLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +L++    +   D  F L   K+M   G+  ++ SYN+++   C  G+   A EI  E+ 
Sbjct: 254 TLIDAYCKMGRIDEAFGL--LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMG 311

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
           +   KG    D  TY+T++  +     +  AL +  +M+  GV+P+ +T+++LIN+   A
Sbjct: 312 Y---KGFTP-DEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKA 367

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVAL 468
             + +AM  F++M   G  PN +    L+         + A+R+    T    S + V  
Sbjct: 368 RNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 427

Query: 469 GEDYDGN--TDRISNMEHKDKQSITN--TPNFVPNSHYSS-------FDKRFSFK----- 512
                G+   +R+       ++ +     P+ V  S   S        D+ F  K     
Sbjct: 428 NAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVE 487

Query: 513 ----PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
               P   TY+ L++  C      +A  L  EM  +GL P+  ++T LI+A    G++  
Sbjct: 488 KGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNK 547

Query: 567 ALQ 569
           AL 
Sbjct: 548 ALH 550



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 151/351 (43%), Gaps = 17/351 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +    K R+L  A+  +D  +     PN     T+ID     G   ++  I  +
Sbjct: 355 VTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNE 414

Query: 282 LRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +     + ++  +N+ ++ +     ++  L V + M + G+  D+ SY+ ++   C  G 
Sbjct: 415 MTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGE 474

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++  E   +  KGV   D  TYS++++   + +    A  + ++ML  G+ P+  
Sbjct: 475 LDRAFQMKQE---MVEKGV-SPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEF 530

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+++LINA    G + +A+HL +EM+  G  P++   ++L+    +  +   A RL    
Sbjct: 531 TYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKL 590

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF------SFKP 513
              ++ V     YD   +  SN+E K   ++     F         D+ F      + KP
Sbjct: 591 IYEES-VPSDVTYDTLIENCSNIEFKSVVALIK--GFCMKGLMHEADRVFESMVERNHKP 647

Query: 514 TTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSG 562
               YN+++   C      KA  L  EM   G  P+ ++   LI A    G
Sbjct: 648 GEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEG 698


>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
          Length = 701

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 120/239 (50%), Gaps = 7/239 (2%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           D+ +   +  +G+  ++  AL+ YD ++      +     T+I + G+ G++     +YE
Sbjct: 246 DVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYE 305

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++++  V  N+ ++N+L++    A        +YK M   G+     +Y  LL+A    G
Sbjct: 306 EMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRA---YG 362

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTPN 397
               A++     K ++ KG L+L V  Y+T++ + AD  + + A  + EDM S+G   P+
Sbjct: 363 RARYAEDALIVYKEMKEKG-LELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPD 421

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           + T+SSLI   + +G V +A  +   ML+AG EPN      L+Q   +A + D   R F
Sbjct: 422 SWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTF 480



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 104/227 (45%), Gaps = 5/227 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   +R +G   +    L  Y+  K     PN+ I  T++D  G      +++ IY++
Sbjct: 282 VTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKE 341

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + +  + L+   + +L+     A   +  L VYK M++ G+   +  YN LL  C   G 
Sbjct: 342 MTNNGLQLSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGY 401

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A  I+ ++K   + G    D +T+S+++ +++ +     A  +   ML AG  PN  
Sbjct: 402 TEEAAAIFEDMK---SSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIF 458

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
             +SLI     A   ++ +  F+ +L+    P+ + C  +L    ++
Sbjct: 459 VLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFCGCMLNVMTQS 505



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 121/264 (45%), Gaps = 32/264 (12%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +E ++ M + G   D  +Y+ ++ A   AGN  +A ++Y   +  +     ++D  T+ST
Sbjct: 231 VEWFEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEK----WRIDPVTFST 286

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +++++  +  +   L V E+M + GV PN + +++L++A   A    QA ++++EM   G
Sbjct: 287 LIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNG 346

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR---------SWTLSKTQVALGEDYDGNTDRI 479
            + +      LL+A   A   + A  +++         S  L  T +A+  D  G T+  
Sbjct: 347 LQLSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADV-GYTEEA 405

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEM 539
           + +     + + ++ N +P+S        ++F    T Y     +C       +A++N M
Sbjct: 406 AAI----FEDMKSSGNCMPDS--------WTFSSLITIY-----SCSGKVSEAEAMLNAM 448

Query: 540 RTVGLSPNHISWTILIDACGGSGN 563
              G  PN    T LI  C G  N
Sbjct: 449 LEAGFEPNIFVLTSLIQ-CYGKAN 471



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 38/221 (17%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +V  Y+  +KVF   +    A K+ ++ML  GV P+ IT+S++I+    + L  +A+  F
Sbjct: 175 EVILYNVTLKVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWF 234

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-----RSWTLSKTQVA-------LG 469
           E+M + GC P+    + ++ A   A   D A +L+       W +     +       + 
Sbjct: 235 EKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMS 294

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CT 527
            ++DG  +    M                        K    KP    YN L+ A     
Sbjct: 295 GNFDGCLNVYEEM------------------------KALGVKPNLVIYNTLLDAMGRAK 330

Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             ++ K +  EM   GL  +  ++  L+ A G +   E AL
Sbjct: 331 RPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGRARYAEDAL 371


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 159/366 (43%), Gaps = 30/366 (8%)

Query: 214 AC-IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
           AC + P A    C  V+ F K  ++  AL   +   KH  SPN  I   I+D     GD+
Sbjct: 185 ACGLSPTAATYGC-IVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDF 243

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
             +  ++ED+ S  +  +I ++N L++    A  +   L V +N++   ++  + +Y  +
Sbjct: 244 TAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSI 303

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           L      GN   A E++  +K       L+  V +Y++++   A A+  + A  +  +ML
Sbjct: 304 LDGYVKGGNIQKALEVFDRIK----TAGLRPGVVSYNSLLSGLAKARQMENARLMLNEML 359

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
           + GV PN  ++++L    A AG VE+A  +F+ M +     +      LL+AC ++    
Sbjct: 360 ANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQ 419

Query: 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD----KQSITNTPNFVPNSHYSSFD 506
           RA  +F+  T          D     +RI+     D    K  ++   + + +       
Sbjct: 420 RAAEVFQQIT----------DAGLKHNRITYCTMLDGWARKGELSKARDLLNDM------ 463

Query: 507 KRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           ++  F   T  Y   +KAC    D   V   +  MR   L  N  ++T LI     + + 
Sbjct: 464 QKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADP 523

Query: 565 EGALQC 570
           + A+ C
Sbjct: 524 DQAISC 529



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 153/355 (43%), Gaps = 36/355 (10%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           L+   +  F + RD    L  +   K    SP       I+ +    G+  K+  I E++
Sbjct: 159 LYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEM 218

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
               V+ N  ++  +M+  A    FT   +V+++M   G+  D+  YNIL+ A C AG  
Sbjct: 219 DKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRM 278

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
               +  G ++++EA  +L   + TY++I+  +      Q AL+V + + +AG+ P  ++
Sbjct: 279 ---DKALGVLENIEANRLLP-TIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVS 334

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---R 457
           ++SL++  A A  +E A  +  EML  G  PN +    L +    A   ++AF +F   +
Sbjct: 335 YNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMK 394

Query: 458 SWTLSKTQVALGEDY-----DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
              L+   VA G         G   R + +     Q IT+                   K
Sbjct: 395 KENLAIDIVAYGALLKACCKSGAMQRAAEV----FQQITDA----------------GLK 434

Query: 513 PTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
               TY  ++       +  + + L+N+M+  G   + I +T  I AC  SG+ E
Sbjct: 435 HNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTE 489



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 163/386 (42%), Gaps = 60/386 (15%)

Query: 228 VREFG-------KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           +RE+G       +  D V+A   ++A +     PN++I  ++I       D   + A  E
Sbjct: 17  LREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTE 76

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++ SQ + LN  VF S+++   +A + +     ++  +   ++     YN +++A C AG
Sbjct: 77  EMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAG 136

Query: 339 N-----TVLAQ---------------------EIYGEVK------HLEAKGVLKLDVFTY 366
           N      +LAQ                     EI  E K       L+A G L     TY
Sbjct: 137 NMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACG-LSPTAATY 195

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
             IVK+F  A     AL + E+M   GV+PN + ++ +++  A  G    A  ++E+M+ 
Sbjct: 196 GCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVS 255

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
           AG +P+    NIL+ A  +A + D+A  +  +   ++    + E Y    D      +  
Sbjct: 256 AGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTI-ETYTSILDGYVKGGNIQ 314

Query: 487 KQSITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTV 542
           K                 FD  K    +P   +YN L+   A        + ++NEM   
Sbjct: 315 KA-------------LEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLAN 361

Query: 543 GLSPNHISWTILIDACGGSGNVEGAL 568
           G+ PN  S+T L +    +G+VE A 
Sbjct: 362 GVVPNERSYTALTEGYARAGDVEKAF 387



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 6/236 (2%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K  ++  AL  +D  K     P +    +++           +R +  ++ +  V  N  
Sbjct: 309 KGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNER 368

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            + +L      A D++    +++ M+K  +  D+ +Y  LLKACC +G    A E++ ++
Sbjct: 369 SYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQI 428

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
                   LK +  TY T++  +A       A  +  DM   G   +TI ++S I AC  
Sbjct: 429 ----TDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFR 484

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           +G  E+       M +   E N++    L+   + A   D+A   +     S  Q+
Sbjct: 485 SGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQL 540


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 161/403 (39%), Gaps = 85/403 (21%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLN 290
           ++ D + A R +D   +    P + I   +I   G+CG+   S A  ++  +R+  +  N
Sbjct: 205 RQGDFLKAFRLFDEMIEKKIFPTVVIYTILIR--GLCGESRISEAESMFRTMRNSGMLPN 262

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA-------------------------- 322
           +Y +N++M+       +K  LE+Y+ M   G++                           
Sbjct: 263 LYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLI 322

Query: 323 DMAS---------YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
           DMAS         YN L+   C AGN   A  ++ E++  E    +  DVFTYS ++K  
Sbjct: 323 DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE----ILPDVFTYSILIKGL 378

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
                 + A  + ++M   G  PN +T+++LI+     G +E+A+ +  +M + G EPN 
Sbjct: 379 CGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNI 438

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTL--------SKTQVALGEDYDGNTDRISNMEHK 485
              + L+    +A + + A  L+    +        + T +  G   DGNT     + HK
Sbjct: 439 ITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRL-HK 497

Query: 486 DKQSITNTPN----------FVPNSHYSSFDKRFSFKPTTTT------------------ 517
           + Q     PN             +   S   K F  K  T T                  
Sbjct: 498 EMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHV 557

Query: 518 -YNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
            Y  L++  CTD   ++     ++MR  GL P+  +  ++I  
Sbjct: 558 MYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQG 600



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 149/363 (41%), Gaps = 56/363 (15%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN+     +ID  G+C   + + +R    D+ S  V  NI+V+N L++    A +L   L
Sbjct: 296 PNVVTFGILID--GLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEAL 353

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            ++  ++K  ++ D+ +Y+IL+K  C        +E  G ++ ++ KG L  +  TY+T+
Sbjct: 354 SLHSEIEKHEILPDVFTYSILIKGLCGVDRM---EEADGLLQEMKKKGFLP-NAVTYNTL 409

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +      + A++V   M   G+ PN IT+S+LI+    AG +E AM L+ EM+  G 
Sbjct: 410 IDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGL 469

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDG--NTDRISNMEH 484
            P+      L+    +      AFRL +      L      L    DG     RIS+   
Sbjct: 470 LPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISD--- 526

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTV 542
             K  +  T      S  +  D+     P    Y  L++  CTD   ++     ++MR  
Sbjct: 527 AIKLFLAKTGTDTTGSKTNELDRSLC-SPNHVMYTALIQGLCTDGRIFKASKFFSDMRCS 585

Query: 543 GLSP-----------------------------------NHISWTILIDACGGSGNVEGA 567
           GL P                                   N   + +L      SG ++ A
Sbjct: 586 GLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSA 645

Query: 568 LQC 570
           L+C
Sbjct: 646 LRC 648



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 121/320 (37%), Gaps = 55/320 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P M  C  ++D     G +     +Y D+ ++  + N+  + +L++      D      +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M +  +   +  Y IL++  C       A+ ++   + +   G+L  +++TY+T++ 
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMF---RTMRNSGMLP-NLYTYNTMMD 271

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +      + AL++ ++ML  G+ PN +T+  LI+       +  A     +M   G  P
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           N    N L+    +A     A  L                                    
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSL------------------------------------ 355

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549
                     +S  +K     P   TY+IL+K  C          L+ EM+  G  PN +
Sbjct: 356 ----------HSEIEKH-EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAV 404

Query: 550 SWTILIDACGGSGNVEGALQ 569
           ++  LID     GN+E A++
Sbjct: 405 TYNTLIDGYCKEGNMEKAIE 424


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 151/345 (43%), Gaps = 22/345 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYD-ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           F    REF  + D   ALR +    ++    P  +I   +I + G  G   K   I+ED+
Sbjct: 49  FSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDM 108

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAG-N 339
              +V  N+Y F +L+N    + ++  +L +   M+K  V  ++ +YN +L AC   G +
Sbjct: 109 PENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSKGGLD 168

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
                 ++ +++H   +G+ + D+ TY+T++   +     + A  V + M  +GV  + +
Sbjct: 169 WEGLLNLFAQMRH---EGI-QPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAV 224

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+ SL++  A +  + +   L  EM   G  P+    N L++A  +A     A  +F+  
Sbjct: 225 TYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQ- 283

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
            + +   A   +      RI            N   F       S  K  S  PT  TYN
Sbjct: 284 -MQRGGCAPDVETYSTLLRIYG----------NQGCFEQVRSLFSDMKDLSTPPTVATYN 332

Query: 520 ILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSG 562
            L++      Y  ++  L ++M   G+ P+  +++ L+  CG  G
Sbjct: 333 SLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGG 377



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 260 RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQK 317
           ++++D         +   +  ++  +    +I  +NSL+    +A ++     V+K MQ+
Sbjct: 227 KSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQR 286

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            G   D+ +Y+ LL+     G     + ++ ++K L         V TY+++++VF +  
Sbjct: 287 GGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPT----VATYNSLIQVFGEGG 342

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           ++Q ++ +  DM+ +GV P+  T+S+L++ C   GL  +A  + + ML     P+
Sbjct: 343 YFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPS 397



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           +P++    T++ + G  G + + R+++ D++  +    +  +NSL+ V      F  ++ 
Sbjct: 290 APDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESIN 349

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++ +M   GV  D A+Y+ LL  C   G T  A +I+  +   E+   L+      + ++
Sbjct: 350 LFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEAS----AGLI 405

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +     ++ AL     +  AG+ P    + +LI   A  GL  +A      M +AG +
Sbjct: 406 SSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQ 465

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476
                 N +++A  +    D A   F     S+ Q   G + D  T
Sbjct: 466 APVSSVNSVMEAYSKVGLHDEALEFF-----SELQQKEGSEVDERT 506



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 77/212 (36%), Gaps = 51/212 (24%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDML-SAGVTPNTITWSSLINACANAGLVEQAM 418
           KL +  +S I + FA    W  AL++ + M       P    ++ +I      GL+E+  
Sbjct: 43  KLTMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCS 102

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478
            +FE+M +   + N      L+ A     Q++ +  L     + K QV            
Sbjct: 103 EIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLAR--MKKEQV------------ 148

Query: 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN- 537
                                            +P   TYN ++ AC       + L+N 
Sbjct: 149 ---------------------------------EPNLITYNTVLNACSKGGLDWEGLLNL 175

Query: 538 --EMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             +MR  G+ P+ I++  L+ AC   G VE A
Sbjct: 176 FAQMRHEGIQPDLITYNTLLSACSSRGLVEQA 207


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 139/305 (45%), Gaps = 23/305 (7%)

Query: 265 VCGICGD--YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGV 320
           + G+C D  +     +  ++  +N+  ++  F++L++V   + K     E+Y  M   G+
Sbjct: 316 IGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI 375

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             D  +YN L+   C       A +++     + +KG  + D+ TYS ++  +  AK   
Sbjct: 376 APDTITYNSLIDGFCKENCLHEANQMF---DLMVSKGC-EPDIVTYSILINSYCKAKRVD 431

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
             +++  ++ S G+ PNTIT+++L+     +G +  A  LF+EM+  G  P+     ILL
Sbjct: 432 DGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILL 491

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
               +  + ++A  +F     S+  + +G  Y+     + N    D             S
Sbjct: 492 DGLCDNGELNKALEIFEKMQKSRMTLGIGI-YNIIIHGMCNASKVDDAW----------S 540

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA- 557
            + S   +   KP   TYN+++   C      +A  L  +M+  G +P+  ++ ILI A 
Sbjct: 541 LFCSLSDK-GVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 599

Query: 558 CGGSG 562
            GGSG
Sbjct: 600 LGGSG 604



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 129/296 (43%), Gaps = 55/296 (18%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACC 335
           ++  +  +N+  ++  ++ +++    D  F   L ++  M+  G+ AD+ +Y+ L+   C
Sbjct: 261 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 320

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G      ++   ++ +  + ++  DV T+S ++ VF        A ++  +M++ G+ 
Sbjct: 321 NDGKWDDGAKM---LREMIGRNIIP-DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIA 376

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+TIT++SLI+       + +A  +F+ M+  GCEP+    +IL+ +  +A + D   RL
Sbjct: 377 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 436

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           FR  +                                +   +PN               T
Sbjct: 437 FREIS--------------------------------SKGLIPN---------------T 449

Query: 516 TTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            TYN L+   C        K L  EM + G+ P+ +++ IL+D    +G +  AL+
Sbjct: 450 ITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALE 505



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 110/246 (44%), Gaps = 11/246 (4%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YM 273
           I+P   + F   +  F K+  L+ A   Y+       +P+     ++ID  G C +    
Sbjct: 340 IIPDV-VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID--GFCKENCLH 396

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           ++  +++ + S+    +I  ++ L+N    A  +   + +++ +   G++ +  +YN L+
Sbjct: 397 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 456

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C +G    A+E++ E   + ++GV    V TY  ++    D      AL++ E M  
Sbjct: 457 LGFCQSGKLNAAKELFQE---MVSRGVPP-SVVTYGILLDGLCDNGELNKALEIFEKMQK 512

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           + +T     ++ +I+   NA  V+ A  LF  +   G +P+    N+++    +      
Sbjct: 513 SRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSE 572

Query: 452 AFRLFR 457
           A  LFR
Sbjct: 573 ADMLFR 578



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 117/291 (40%), Gaps = 31/291 (10%)

Query: 294 FNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           FN L +  A   ++ L +   K M+  G+  DM +  I++   C     + A  + G   
Sbjct: 102 FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAW 161

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            L  +     D  T+ST+V  F        A+ + + M+     P+ +T S+LIN     
Sbjct: 162 KLGYEP----DTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLK 217

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-----TLSKTQV 466
           G V +A+ L + M++ G +P+      +L    ++     A  LFR         S  Q 
Sbjct: 218 GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQY 277

Query: 467 ALGED---YDGNTDR----ISNMEHKD-KQSITNTPNFVP----NSHYSSFDKRF----- 509
           ++  D    DG+ D      + ME K  K  +    + +     +  +    K       
Sbjct: 278 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 337

Query: 510 -SFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
            +  P   T++ L+     +      K L NEM T G++P+ I++  LID 
Sbjct: 338 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDG 388



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 13/205 (6%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+  V G C  G    ++ +++++ S+ V  ++  +  L++   +  +L   L
Sbjct: 447 PNTITYNTL--VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 504

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+++ MQK  +   +  YNI++   C A     A  ++     L  KGV K DV TY+ +
Sbjct: 505 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCS---LSDKGV-KPDVVTYNVM 560

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAG 428
           +           A  +   M   G TP+  T++ LI A    +GL+  ++ L EEM   G
Sbjct: 561 IGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLI-SSVELIEEMKVCG 619

Query: 429 CEPNSQCCNILLQACVEACQFDRAF 453
              +S    +++    +  + D++F
Sbjct: 620 FSADSSTIKMVIDMLSDR-RLDKSF 643


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 187/435 (42%), Gaps = 48/435 (11%)

Query: 129 IDCVVGVLKKLNELGVAPLELFDGSG---FKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185
           +D +V    K  E+ +A LE FD +G   F+L    C  +L S   E  +G++E +    
Sbjct: 162 VDMLVWAYVKNGEMDLA-LEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESV---- 216

Query: 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245
              KE+       ++ VN    ++ I   C V +           F K  D+V  ++A+ 
Sbjct: 217 --YKEMIRR----RIGVNVVTFDVVINGLCKVGK-----------FQKAGDVVEDMKAWG 259

Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305
            S      P++    TIID     G   K+ A+ +++ ++ +  N   FN L++    D 
Sbjct: 260 FS------PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDE 313

Query: 306 KFTL--EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
             T   +V++ MQ+ G+  ++ +YN L+   C  G      E  G    +   G LK +V
Sbjct: 314 NVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL---DEALGLQDKMSGMG-LKPNV 369

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY+ ++  F   K  + A ++ +D+   G+ PN IT+++LI+A   AG ++ A  L   
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSM 429

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           ML  G  PN    N L+        F R   +  +  L+K     G   D  T  I    
Sbjct: 430 MLDTGVCPNVSTYNCLIVG------FCREGNVKEARKLAKEMEGNGLKADLVTYNILVDA 483

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRT 541
              K         +     +  +K+   +    TYN+L+K  C      +A  L+NEM  
Sbjct: 484 LCKKGETRKAVRLL--DEMTLMEKK-GRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLE 540

Query: 542 VGLSPNHISWTILID 556
            GL PN  ++ IL D
Sbjct: 541 KGLIPNRTTYDILRD 555



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 95/199 (47%), Gaps = 13/199 (6%)

Query: 254 PNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           PN+     +I+  G C   M  ++R + +D+  + +  N+  FN+L++    A  +    
Sbjct: 367 PNVVTYNALIN--GFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAF 424

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +   M   GV  ++++YN L+   C  GN   A+++    K +E  G LK D+ TY+ +
Sbjct: 425 LLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKL---AKEMEGNG-LKADLVTYNIL 480

Query: 370 VKVFADAKWWQMALKVKEDML---SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           V         + A+++ ++M      G   N +T++ LI    N G +E+A  L  EML+
Sbjct: 481 VDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLE 540

Query: 427 AGCEPNSQCCNILLQACVE 445
            G  PN    +IL    +E
Sbjct: 541 KGLIPNRTTYDILRDEMME 559



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 3/190 (1%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  F KK+ L  A    D   K   +PN+    T+ID  G  G    +  +   +    
Sbjct: 375 LINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTG 434

Query: 287 VTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           V  N+  +N L+       ++K   ++ K M+  G+ AD+ +YNIL+ A C  G T  A 
Sbjct: 435 VCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAV 494

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
            +  E+  +E KG  + ++ TY+ ++K F +    + A ++  +ML  G+ PN  T+  L
Sbjct: 495 RLLDEMTLMEKKG-RRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 553

Query: 405 INACANAGLV 414
            +     G +
Sbjct: 554 RDEMMEKGFI 563


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 127/298 (42%), Gaps = 40/298 (13%)

Query: 279 YEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           Y ++ +  V LN    +S      +A   +    V + M   G + D ++Y+ +L   C 
Sbjct: 436 YSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCN 495

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           A    LA  ++ E+K    +G L  DV+TY+ +V  F  A   + A K   +M   G TP
Sbjct: 496 ASKMELAFLLFEEMK----RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTP 551

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N +T+++LI+A   A  V  A  LFE ML  GC PN    + L+    +A Q ++A ++F
Sbjct: 552 NVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIF 611

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
                SK                            + P+   + ++  +D   S +P   
Sbjct: 612 ERMCGSK----------------------------DVPDV--DMYFKQYDDDNSERPNVV 641

Query: 517 TYNILMKACCTDYYRV---KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            Y  L+   C   +RV   + L++ M   G  PN I +  LID     G ++ A + +
Sbjct: 642 IYGALLDGFCK-LHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 698



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 148/347 (42%), Gaps = 54/347 (15%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
           G Y K+ ++  ++  Q    +   ++ ++    NA  ++    +++ M++ G++AD+ +Y
Sbjct: 462 GKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTY 521

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            I++ + C AG    A++ + E++ +        +V TY+ ++  +  AK    A ++ E
Sbjct: 522 TIMVDSFCKAGLIEQARKWFNEMREVGCTP----NVVTYTALIHAYLKAKKVSYANELFE 577

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP------------NSQC 435
            MLS G  PN +T+S+LI+    AG +E+A  +FE M  +   P            NS+ 
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSER 637

Query: 436 CNI-----LLQACVEACQFDRAFRLFRSWTLS---KTQVALGEDYDGNTDRISNMEHKDK 487
            N+     LL    +  + + A +L  + ++      Q+      DG   ++  ++   +
Sbjct: 638 PNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLC-KVGKLDEAQE 696

Query: 488 QSITNTPNFVPNSHY---SSFDKRFSFK------------------PTTTTYNILMKACC 526
                + +  P + Y   S  D+ F  K                  P    Y  ++   C
Sbjct: 697 VKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC 756

Query: 527 ----TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               TD      LM  M   G  PN +++T +ID  G  G +E  L+
Sbjct: 757 KVGKTD--EAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLE 801



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 14/211 (6%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           +++   +  F K   +  A +  DA       PN  +   +ID  G+C  G   +++ + 
Sbjct: 641 VIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALID--GLCKVGKLDEAQEVK 698

Query: 280 EDLRSQNVTLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            ++        +Y ++SL++    V   DL    +V   M +     ++  Y  ++   C
Sbjct: 699 AEMSEHGFPATLYTYSSLIDRYFKVKRQDL--ASKVLSKMLENSCAPNVVIYTEMIDGLC 756

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G T    E Y  ++ +E KG  + +V TY+ ++  F      +  L++ E M S GV 
Sbjct: 757 KVGKT---DEAYKLMQMMEEKGC-QPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVA 812

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           PN +T+  LI+ C   G ++ A +L EEM Q
Sbjct: 813 PNYVTYRVLIDHCCKNGALDVAHNLLEEMKQ 843



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 101/280 (36%), Gaps = 71/280 (25%)

Query: 293 VFNSLMNV------NAHDLKFTLEVYKNMQKLGVMADMASYNIL----LKACCLAGNTVL 342
           VF   +NV       +      LE    ++        ++YN L    LKA CL   +++
Sbjct: 198 VFGEFLNVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLV 257

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
            +E+        +   L++D FT             W+ AL + E   +    P+T+ ++
Sbjct: 258 HREM--------SLANLRMDGFTLRCYAYSLCKVGKWREALTLME---TENFVPDTVFYT 306

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
            LI+    A L E+AM     M    C PN    + LL  C                 L+
Sbjct: 307 KLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC-----------------LN 349

Query: 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
           K Q+       G   R+ NM   +                          P+   +N L+
Sbjct: 350 KKQL-------GRCKRVLNMMMME-----------------------GCYPSPKIFNSLV 379

Query: 523 KACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA-CG 559
            A CT  D+     L+ +M   G +P ++ + ILI + CG
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICG 419



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 107/237 (45%), Gaps = 39/237 (16%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           K++DL S  +      ++  +PN+ I   +ID  G+C  G   ++  + + +  +    N
Sbjct: 724 KRQDLAS--KVLSKMLENSCAPNVVIYTEMID--GLCKVGKTDEAYKLMQMMEEKGCQPN 779

Query: 291 IYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           +  + ++++       ++  LE+ + M   GV  +  +Y +L+  CC  G   +A  +  
Sbjct: 780 VVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 839

Query: 349 EVKH---------------------LEAKGVL----KLDVFTYSTIVKVFAD----AKWW 379
           E+K                      +E+ G+L    + D   + ++ ++  D    A+  
Sbjct: 840 EMKQTHWPTHAAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRL 899

Query: 380 QMALKVKEDM--LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           +MAL++ E++   SA +   + T++SLI +   A  V++A  LF EM + G  P  Q
Sbjct: 900 EMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQ 956



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 43/215 (20%)

Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           Y+D  S+    N+ ++ +L++     H ++   ++   M   G   +   Y+ L+   C 
Sbjct: 630 YDDDNSERP--NVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 687

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS----- 391
            G    AQE+  E+        L    +TYS+++  +   K   +A KV   ML      
Sbjct: 688 VGKLDEAQEVKAEMSEHGFPATL----YTYSSLIDRYFKVKRQDLASKVLSKMLENSCAP 743

Query: 392 ------------------------------AGVTPNTITWSSLINACANAGLVEQAMHLF 421
                                          G  PN +T++++I+     G +E  + L 
Sbjct: 744 NVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELL 803

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           E M   G  PN     +L+  C +    D A  L 
Sbjct: 804 ERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLL 838



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 124/308 (40%), Gaps = 41/308 (13%)

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           +LR    TL  Y + SL  V       TL     M+    + D   Y  L+   C A   
Sbjct: 265 NLRMDGFTLRCYAY-SLCKVGKWREALTL-----METENFVPDTVFYTKLISGLCEAS-- 316

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
            L +E    +  + A   L  +V TYST++    + K      +V   M+  G  P+   
Sbjct: 317 -LFEEAMDFLNRMRATSCLP-NVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKI 374

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVE----ACQF----DR 451
           ++SL++A   +G    A  L ++M++ G  P     NIL+ + C +    +C      ++
Sbjct: 375 FNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEK 434

Query: 452 AFR--LFRSWTLSKTQVA-------LGEDYDGNTDRISNMEHK----DKQSITNTPNFVP 498
           A+   L     L+K  V+           Y+     I  M  +    D  + +    ++ 
Sbjct: 435 AYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLC 494

Query: 499 NSH-----YSSFD--KRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHI 549
           N+      +  F+  KR        TY I++ + C      + +   NEMR VG +PN +
Sbjct: 495 NASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVV 554

Query: 550 SWTILIDA 557
           ++T LI A
Sbjct: 555 TYTALIHA 562


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 151/336 (44%), Gaps = 44/336 (13%)

Query: 249 KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLK 306
           + L +PN++    +ID     G+  ++R+++  ++      ++  FNSL++      +L 
Sbjct: 181 EQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELD 240

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
              ++ + M++ G  AD+ +YN L+   C  G     +  YG    ++ +GV+  +V T+
Sbjct: 241 EVEQLVEEMRRSGCKADVVTYNALINCFCKFGRM---ETAYGYFAAMKREGVMA-NVVTF 296

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           ST V  F      + A+K+   M   G+  N  T++ LI+    AG ++ A+ L +EM++
Sbjct: 297 STFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVR 356

Query: 427 AGCEPNSQCCNILLQA-CVE--ACQFDRAFRLF-----RSWTLSKTQVALGEDYDGNTDR 478
            G   N     +L+   C E    + +   R+      R+  L  T +  G   + N+++
Sbjct: 357 QGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEK 416

Query: 479 ----ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RV 532
               +S M++K                          +   + Y  L++  C  +     
Sbjct: 417 ALGLLSEMKNK------------------------GLELDISLYGALIQGLCNVHKLDEA 452

Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           K+L+ +M   GL PN+I +T ++DAC  SG V  A+
Sbjct: 453 KSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAI 488



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 140/351 (39%), Gaps = 55/351 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F  FV  F K+  +  A++ +   +    + N +    +ID     G    +  + ++
Sbjct: 294 VTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDE 353

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q V LN+  +  L++    + K     +V + M+K GV A+   Y  L+    +  N
Sbjct: 354 MVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKN 413

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           +  A  +  E+K+   KG L+LD+  Y  +++   +      A  +   M  +G+ PN I
Sbjct: 414 SEKALGLLSEMKN---KG-LELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYI 469

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++++++AC  +G V +A+ + +++L +G +PN      L+    +A   D A       
Sbjct: 470 IYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI------ 523

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                                   SH++   +     P    Y 
Sbjct: 524 ----------------------------------------SHFNKM-RDLGLDPNVQAYT 542

Query: 520 ILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            L+   C +    +A  L NEM   G+S + + +T L+D     GN+  A 
Sbjct: 543 ALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAF 593



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 87/204 (42%), Gaps = 33/204 (16%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN  I  T++D C   G   ++ A+ + +       N+  + +L++    A  +   +  
Sbjct: 466 PNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISH 525

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH------------------- 352
           +  M+ LG+  ++ +Y  L+   C  G    A +++ E+ H                   
Sbjct: 526 FNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLK 585

Query: 353 ---------LEAKGV---LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
                    L+AK +   L+LD+F Y+  +  F +      A +V  +M+  G+ P+   
Sbjct: 586 QGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAV 645

Query: 401 WSSLINACANAGLVEQAMHLFEEM 424
           ++ LI+     G +E+A+ L +EM
Sbjct: 646 YNCLISKYQKLGNLEEAISLQDEM 669



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 82/197 (41%), Gaps = 6/197 (3%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+  +  +++++ + L+I ++ +L+    N H L     +   M + G+  +   Y  ++
Sbjct: 416 KALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMM 475

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            AC  +G      E    ++ +   G  + +V TY  ++     A     A+     M  
Sbjct: 476 DACFKSGKV---PEAIAMLQKILDSG-FQPNVITYCALIDGLCKAGSIDEAISHFNKMRD 531

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+ PN   +++L++     G + +A+ LF EM+  G   +      LL   ++      
Sbjct: 532 LGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHD 591

Query: 452 AFRLFRSWTLSKTQVAL 468
           AF L      S  Q+ L
Sbjct: 592 AFALKAKMIDSGLQLDL 608


>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1016

 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 140/319 (43%), Gaps = 47/319 (14%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           I ++L S     ++  FN+L++    A ++   L++ + M+K G+++D+ SYN L+   C
Sbjct: 134 IMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFC 193

Query: 336 LAGNTVLAQEIYGEVKHLEAKGV-------------------LKLDVFTYSTIVKVFADA 376
             G    A+ +  E+   E++GV                   L+ D+ TY+TI+  +   
Sbjct: 194 KRGEYDKAKSLLHEIS--ESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQ 251

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
              + A  + E+M+  G  P+ +T+SS++N     G + +A  L  EM + G +PN    
Sbjct: 252 HGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAY 311

Query: 437 NILLQACVEACQFDRAFR-----LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
             L+ +  +A     AF      + R  TL    V      DG        E +D     
Sbjct: 312 TTLIDSLFKAGSAWEAFACQSQLVVRGMTLD--LVMCTTLVDGLFKSSKPKEAEDMFRAL 369

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549
           +  N +PNS                TY  L+   C   D  RV++L+ EM    ++PN I
Sbjct: 370 SKLNLIPNS---------------ITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVI 414

Query: 550 SWTILIDACGGSGNVEGAL 568
           +++ +I+     G ++ A+
Sbjct: 415 TYSSIINGYTKKGILDEAI 433



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/353 (20%), Positives = 153/353 (43%), Gaps = 57/353 (16%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILL 331
           ++RA+YE++       ++  ++S++N    D + +   E+ + M+K+GV  +  +Y  L+
Sbjct: 256 EARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLI 315

Query: 332 KACCLAGN-----------------------TVLAQEIYGEVKHLEAKGVL----KLDVF 364
            +   AG+                       T L   ++   K  EA+ +     KL++ 
Sbjct: 316 DSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLI 375

Query: 365 ----TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
               TY+ ++  +      +    + ++M    + PN IT+SS+IN     G++++A+++
Sbjct: 376 PNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINV 435

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV--ALGEDYDGNTDR 478
            ++ML     PN+    IL+    +A + + A  L+    LS  +V   L +    N  R
Sbjct: 436 MKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKR 495

Query: 479 ISNMEHKDK--QSITNTPNFVPNSHYSSFDKRF-------------------SFKPTTTT 517
              M+  ++  + +T+    + + +Y+S    F                   S      T
Sbjct: 496 GKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVT 555

Query: 518 YNILMKACCTD-YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           YN+L+        Y  K++ + M  +GL+PN  ++ I+I A    G ++ AL+
Sbjct: 556 YNVLINGLLEHGKYEAKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALE 608



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 138/331 (41%), Gaps = 41/331 (12%)

Query: 282 LRSQNVTLNIYVFNSLM-NVNAHDLKFTL-EVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R  N+   + ++N L+ + NA  L   + ++Y  M    V  ++ ++N+L+ A C  GN
Sbjct: 1   MRKHNIVPTLLLWNQLIYHFNAFGLVSQVCDIYTEMLCSAVPPNVYTHNVLVHAWCKMGN 60

Query: 340 TVLAQE-----------------IYGEVKHL---EAKGVLKL--------DVFTYSTIVK 371
            +LA +                 I+G  +H    +A G L +        D  T + +VK
Sbjct: 61  LILALDLLRNVDVEVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILVK 120

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F      +   ++ ++++S G   + I +++LI+    AG +  A+ L E M + G   
Sbjct: 121 GFCRIGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLS 180

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLS---KTQVALGEDYDGNTDRISNMEHKDKQ 488
           +    N L+    +  ++D+A  L    + S   K  V    D     D   N+E     
Sbjct: 181 DIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLIT 240

Query: 489 SITNTPNFVPNSHYSSFDKRF------SFKPTTTTYNILMKACCTD--YYRVKALMNEMR 540
             T    +            +       F P   TY+ ++   C D      + L+ EM+
Sbjct: 241 YTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMK 300

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            +G+ PNH+++T LID+   +G+   A  C+
Sbjct: 301 KMGVDPNHVAYTTLIDSLFKAGSAWEAFACQ 331



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 148/341 (43%), Gaps = 65/341 (19%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            ++ + K+ +L +AL  ++  K H   P+   C T++      G+  K+  +  ++    
Sbjct: 593 MIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMG 652

Query: 287 VTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +  N+ +   L+N ++   K    L++++ +  +G+  +  +YN L+   C    T  A 
Sbjct: 653 IHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKAT 712

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
            +   +K++   G +  D  TY+ +++ + ++   + AL     ML+ GV+PN +T++ L
Sbjct: 713 SV---LKYMIRDGFVA-DTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLL 768

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
           +     AGL+ +   LF++M + G  P++   + L+    +      + RL+        
Sbjct: 769 LGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCE------ 822

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
            VA G                                         F P T+TYN+L+  
Sbjct: 823 MVAQG-----------------------------------------FVPKTSTYNVLI-- 839

Query: 525 CCTDYYRV------KALMNEMRTVGLSPNHISWTILIDACG 559
             +D+ +V      + L+NEM+  G+ P+  ++ ILI  CG
Sbjct: 840 --SDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILI--CG 876



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 139/357 (38%), Gaps = 32/357 (8%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I + + +  + KK  L  A+            PN Y+   +ID     G    +  +Y +
Sbjct: 414 ITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNE 473

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++   + +N  +F+ L+N       +    E+ K++   G++ D  +Y  L+     AG 
Sbjct: 474 MKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGK 533

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  +  E+     +  +  DV TY+ ++    +   ++ A  V   M+  G+ PN  
Sbjct: 534 ESAALNMVEEM----TEKSIPFDVVTYNVLINGLLEHGKYE-AKSVYSGMIEMGLAPNQA 588

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++ +I A    G ++ A+ L+ EM      P+S  CN L+    EA + ++A  +    
Sbjct: 589 TYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEM 648

Query: 460 TLSKTQVAL--------GEDYDGNTDRISNMEH-------KDKQSITNTPNFV------- 497
           ++      L             G  + +  M         K  Q   N    V       
Sbjct: 649 SVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMT 708

Query: 498 -PNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISW 551
              +    +  R  F   T TYN L++  C   +  KAL    +M   G+SPN +++
Sbjct: 709 KKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTY 765



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 135/353 (38%), Gaps = 87/353 (24%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN      +ID  G C  GD  +  ++ +++  +++  N+  ++S++N       L   +
Sbjct: 376 PNSITYTALID--GYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAI 433

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK------------------ 351
            V K M    ++ +   Y IL+   C AG   +A ++Y E+K                  
Sbjct: 434 NVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNL 493

Query: 352 -----HLEAKGVLK--------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
                  EA+ +LK        LD   Y++++  F  A     AL + E+M    +  + 
Sbjct: 494 KRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDV 553

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +T++ LIN     G  E A  ++  M++ G  PN    NI+++A  +  + D A  L   
Sbjct: 554 VTYNVLINGLLEHGKYE-AKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALEL--- 609

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
           W   K+                   HK                           P++ T 
Sbjct: 610 WNEMKS-------------------HK-------------------------IMPSSITC 625

Query: 519 NILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           N L+          KA+  +NEM  +G+ PN +   +L++A   SG     LQ
Sbjct: 626 NTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQ 678


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 132/333 (39%), Gaps = 49/333 (14%)

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC---- 335
           + ++    N  +FNSL++   N  D  +  ++   M   G       YNI + + C    
Sbjct: 103 MMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEK 162

Query: 336 LAGNTVL--AQEIYGE--------------------------------VKHLEAKGVLKL 361
           L    +L  A++IYGE                                +K +  KG +  
Sbjct: 163 LPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP- 221

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D  TYS ++     A   + A  + ++M   GVTP+  T++ LI++   AGL+EQA  LF
Sbjct: 222 DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLF 281

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDG--NT 476
           EEM   GC P       L+ A ++A Q  +A  +F            V  G   DG    
Sbjct: 282 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 341

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKA 534
             IS    +    +  T +   +  Y   + R +  P   TY  L+   C  +       
Sbjct: 342 GNISK-AFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 400

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           L++ M + G  PNHI +  LID    +G ++ A
Sbjct: 401 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSA 433



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 137/335 (40%), Gaps = 69/335 (20%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++Y    +ID     G   +++ ++E++RS   +  +  + +L++  + A  +    +
Sbjct: 255 TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAND 314

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH------------LEAKGV 358
           ++  M   G   +  +Y  L+   C AGN   A E+Y ++               E +  
Sbjct: 315 IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHT 374

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
           L  +V TY  +V     A     A ++ + MLS+G  PN I + +LI+    AG ++ A 
Sbjct: 375 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 434

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD- 477
            +F +M + G  P+      L+         DR F+                  DG  D 
Sbjct: 435 EVFLQMTKCGYLPSVHTYTSLI---------DRMFK------------------DGRLDL 467

Query: 478 --RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA- 534
             ++ +   KD    + TPN V                   TY  ++   C      KA 
Sbjct: 468 AMKVLSQMLKD----SCTPNVV-------------------TYTAMIDGLCRIGESEKAL 504

Query: 535 -LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            L++ M   G SPN +++T LID  G +G ++ +L
Sbjct: 505 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 539



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  + +L++    AH +    E+   M   G   +   Y+ L+   C AG    AQE++
Sbjct: 378 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 437

Query: 348 GEVKHLEAKGVLKLDVFTYSTIV-KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
            ++      G L   V TY++++ ++F D +   +A+KV   ML    TPN +T++++I+
Sbjct: 438 LQMTKC---GYLP-SVHTYTSLIDRMFKDGRL-DLAMKVLSQMLKDSCTPNVVTYTAMID 492

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
                G  E+A+ L   M + GC PN      L+    +A + D +  LF
Sbjct: 493 GLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 542



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 107/227 (47%), Gaps = 14/227 (6%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           A++      K   +PN+     +ID  G+C  G+  K+  +   +  +  + N+  + +L
Sbjct: 468 AMKVLSQMLKDSCTPNVVTYTAMID--GLCRIGESEKALKLLSLMEEKGCSPNVVTYTAL 525

Query: 298 MNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++    A  +  +L+++  M + G   +  +Y +L+   C AG    A+ + GE+K    
Sbjct: 526 IDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYW 585

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
              L+     Y   ++ F+  K +  +L + E+M S G  P    +  LI+  + AG +E
Sbjct: 586 PKYLQ----GYRCAIQGFS--KSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLE 639

Query: 416 QAMHLFEEMLQ--AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
            AM L +EM++  +  + ++     L+QA   A Q + AFRL+   T
Sbjct: 640 IAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMT 686



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 96/213 (45%), Gaps = 10/213 (4%)

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN-- 299
           +    +H  +PN+     ++D  G+C  +    A  + + + S     N  V+++L++  
Sbjct: 367 FPCEDRHTLAPNVVTYGALVD--GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 424

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
             A  +    EV+  M K G +  + +Y  L+      G   LA ++  ++     K   
Sbjct: 425 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM----LKDSC 480

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             +V TY+ ++         + ALK+   M   G +PN +T+++LI+    AG ++ ++ 
Sbjct: 481 TPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLD 540

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           LF +M + GC PN     +L+     A   D+A
Sbjct: 541 LFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKA 573



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 10/186 (5%)

Query: 245 DASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302
           DA       PN  +   +ID  G C  G    ++ ++  +       +++ + SL++   
Sbjct: 403 DAMLSSGCEPNHIVYDALID--GFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 460

Query: 303 HD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
            D  L   ++V   M K     ++ +Y  ++   C  G +  A ++   +  +E KG   
Sbjct: 461 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKL---LSLMEEKGC-S 516

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            +V TY+ ++     A    ++L +   M   G +PN +T+  LIN    AGL+++A  L
Sbjct: 517 PNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLL 576

Query: 421 FEEMLQ 426
             EM Q
Sbjct: 577 LGEMKQ 582


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 143/309 (46%), Gaps = 22/309 (7%)

Query: 254 PNMYICRTII-DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
           PN +   ++I  +CG+ G +++   + +++  + + +++YVF  L++    +  L    E
Sbjct: 218 PNEFTYGSLIRGLCGV-GKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEARE 276

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M   G   ++ +   L+   CL GN  +A+E++  +     +   K DV+TY+  +
Sbjct: 277 MFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAI----GEWGFKRDVWTYNVFI 332

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +      + A++V ++M   GV PN +T++SLI+    AG V  A  + + M ++G  
Sbjct: 333 HGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLT 392

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P+   C ILL    ++ + D+A  LF     S     L  D    T  I        + +
Sbjct: 393 PDIVTCCILLDGLCKSKRLDQAILLFNQLVES----GLTPDVWSYTILIHGC--CTSRRM 446

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNH 548
               N + + H        +  P   TY+ L+   C       A  L+NEM   G  P+ 
Sbjct: 447 GEAMNLLRDMHLK------NLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDT 500

Query: 549 ISWTILIDA 557
           I+++IL+DA
Sbjct: 501 ITYSILLDA 509



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 109/233 (46%), Gaps = 6/233 (2%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
           F+  + K   +  A+R +D   +    PN+    ++ID     G+   +  I + +    
Sbjct: 331 FIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSG 390

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +T +I     L++    +  L   + ++  + + G+  D+ SY IL+  CC +     A 
Sbjct: 391 LTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAM 450

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
            +  ++ HL+    L   + TYS ++     +     A ++  +M   G  P+TIT+S L
Sbjct: 451 NLLRDM-HLKN---LVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSIL 506

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           ++A      +++A+ LF +M++ G EP+  C  I++    ++ + D A  LFR
Sbjct: 507 LDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFR 559



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 121/317 (38%), Gaps = 48/317 (15%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN---VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           S +I+  +  +   L+    N+++    VN   LK  LE +  +   G   +  SY IL+
Sbjct: 91  SFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLK-ALEFHDEIVNNGFSLNEVSYGILI 149

Query: 332 KACCLAGNTV----LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
              C  G       L + I  E +  +    +K +V  YS ++       +     +   
Sbjct: 150 NGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYN 209

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA----- 442
           +M+  GV PN  T+ SLI      G   +   L +EM++ G + +     +L+       
Sbjct: 210 EMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNG 269

Query: 443 -CVEACQ-FDRAF-RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
             VEA + FD    R +    ++ T +  G    GN D    +                 
Sbjct: 270 MLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMAREL----------------- 312

Query: 500 SHYSSFDK--RFSFKPTTTTYNILMKACCT-----DYYRVKALMNEMRTVGLSPNHISWT 552
                FD    + FK    TYN+ +   C      D  RV    +EM   G+ PN +++ 
Sbjct: 313 -----FDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRV---FDEMCREGVVPNIVTYN 364

Query: 553 ILIDACGGSGNVEGALQ 569
            LID    +G V GA +
Sbjct: 365 SLIDCLCKAGEVSGAWE 381


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 152/327 (46%), Gaps = 41/327 (12%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P+ +  R++ID  G+C  G+  ++ A++ +   + +  N+ ++N+L+    N   +    
Sbjct: 354 PDEFTYRSLID--GLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAA 411

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   M + G++ ++ ++NIL+   C  G    A    G VK + +KG    D+FT++ +
Sbjct: 412 QLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDAD---GLVKVMISKGYFP-DIFTFNIL 467

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  ++     + AL++ + M+  GV P+  T++SL+N        E  M  ++ M++ GC
Sbjct: 468 IHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGC 527

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG---NTDRISNME 483
            PN    NILL++     + D+A  L    ++ +++   V  G   DG   N D      
Sbjct: 528 APNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDL----- 582

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKR---FSFKPTTTTYNILMKACCT--DYYRVKALMNE 538
                          +  Y+ F K    +    +T TYNI++ A     +    + L  E
Sbjct: 583 ---------------DGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQE 627

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVE 565
           M    L P+  ++ +++D    +GNV+
Sbjct: 628 MVDRCLGPDGYTYRLMVDGFCKTGNVD 654



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 6/175 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD  +   + + +  + V  N++ +N  +       +L   + +   +   G   D+ +Y
Sbjct: 230 GDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTY 289

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N L+   C   +     E+Y  +  L  +G L+ D FTY+T++  +      Q+A ++  
Sbjct: 290 NYLIYGLC-KNSKFQEAEVY--LGKLVNEG-LEPDSFTYNTLIAGYCKGGMVQLAERILV 345

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           + +  G  P+  T+ SLI+   + G   +A+ LF E L  G +PN    N L++ 
Sbjct: 346 NAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKG 400



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 109/268 (40%), Gaps = 25/268 (9%)

Query: 290 NIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +I+ FN L++  +  LK    LE+   M   GV  D+ +YN LL   C         E Y
Sbjct: 460 DIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETY 519

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
              K +  KG    ++FT++ +++          AL + E+M +  V P+ +T+ +LI+ 
Sbjct: 520 ---KTMVEKGCAP-NLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDG 575

Query: 408 CANAGLVEQAMHLF---EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
               G ++ A  LF   EE+    C  ++   NI++ A  E      A +LF+       
Sbjct: 576 FCKNGDLDGAYTLFRKMEEVYMVSC--STPTYNIIIHAFTEKLNVTMAEKLFQEM----V 629

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
              LG   DG T R+             T N      +        F P+ TT   ++  
Sbjct: 630 DRCLGP--DGYTYRLM------VDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINC 681

Query: 525 CCTD--YYRVKALMNEMRTVGLSPNHIS 550
            C +   Y    +++ M   GL P  ++
Sbjct: 682 LCVEDRVYEAAGIIHRMVQKGLVPEAVN 709



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/333 (19%), Positives = 133/333 (39%), Gaps = 43/333 (12%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASY 327
           G   ++  ++E +   +    ++ +N++M++      F    +VY  M+  G+  D+ S+
Sbjct: 90  GKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSF 149

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            I +K+ C       A  +   + ++ ++G  +++V  Y T+V  F +  +     ++  
Sbjct: 150 TIRMKSFCRTSRPHAALRL---LNNMSSQGC-EMNVVAYCTVVGGFYEENFKDEGYELFG 205

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            ML++GV+    T++ L++     G V++   L +++++ G  PN    N  +Q   +  
Sbjct: 206 KMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKG 265

Query: 448 QFDRAFR-----------------------LFRSWTLSKTQVALGE------DYDGNTDR 478
           + D A R                       L ++    + +V LG+      + D  T  
Sbjct: 266 ELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYN 325

Query: 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALM 536
                +     +      + N+ ++       F P   TY  L+   C   +  R  AL 
Sbjct: 326 TLIAGYCKGGMVQLAERILVNAVFN------GFVPDEFTYRSLIDGLCHEGETNRALALF 379

Query: 537 NEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           NE    G+ PN I +  LI      G +  A Q
Sbjct: 380 NEALGKGIKPNVILYNTLIKGLSNQGLILEAAQ 412



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/210 (19%), Positives = 89/210 (42%), Gaps = 9/210 (4%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRS 284
            +  +  +  + +AL   D    +   P++Y   ++++  G+C    Y      Y+ +  
Sbjct: 467 LIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLN--GLCKTSKYEDVMETYKTMVE 524

Query: 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           +    N++ FN L+      H L   L + + M+   V  D  ++  L+   C  G+   
Sbjct: 525 KGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDG 584

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A  ++   + +E   ++     TY+ I+  F +     MA K+ ++M+   + P+  T+ 
Sbjct: 585 AYTLF---RKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYR 641

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPN 432
            +++     G V+       EM++ G  P+
Sbjct: 642 LMVDGFCKTGNVDLGYKFLLEMMENGFIPS 671



 Score = 45.8 bits (107), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 19/193 (9%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNM-QKLGVMADM-ASYNILLKACCLAGNTVLAQEIYGEV 350
           +FNS+   +    K TL  Y+++ +KLG+     A   +L+      GN +L     G +
Sbjct: 26  MFNSMRKEDG--FKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHMLEGVYVGAM 83

Query: 351 KHLEAKGVL--------KLD-------VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
           K+   KG +        ++D       VF+Y+ I+ +  D+ ++  A KV   M   G+T
Sbjct: 84  KNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGIT 143

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+  +++  + +         A+ L   M   GCE N      ++    E    D  + L
Sbjct: 144 PDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYEL 203

Query: 456 FRSWTLSKTQVAL 468
           F     S   + L
Sbjct: 204 FGKMLASGVSLCL 216


>gi|168025874|ref|XP_001765458.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683308|gb|EDQ69719.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 670

 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 129/275 (46%), Gaps = 36/275 (13%)

Query: 219 RADILFCNFV-REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM-KSR 276
           R D+   N V  + G+ ++  +A + + A +     PN Y+C T+I   G CG  + ++ 
Sbjct: 179 RVDVRSMNVVVWQLGQMQNWYAATKVFRAFRSAGVEPNAYVCTTLIAALG-CGRRLSQAL 237

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            ++  +    +   I+ FN+LM            +E+++ M+KLG++ D  ++  L+ A 
Sbjct: 238 KLFRWMEKAGIERPIFTFNALMVACGRCASGDTAVELFEEMEKLGIVPDRITFTGLVSAT 297

Query: 335 CLAGNTVLAQEI---------------YGEV--------KHLEAKGVLK--------LDV 363
             AG    AQ                 Y E+        K  EA G+ +        L +
Sbjct: 298 TAAGLWDRAQSFIDMMQARGFSIGLHEYIEMQWACARARKPREAYGLFQVMLEQGYELKL 357

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            +Y+ ++  +     W+ A++    +   G+TP+ ++WSSLI+ACANAG  E+A+ + E 
Sbjct: 358 ESYNALLCAYERTAQWEDAMRTFIWIQDKGLTPDVMSWSSLISACANAGQAERALEVLER 417

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           M  + C+PN      LL+A  +   +++A  +F +
Sbjct: 418 MKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHA 452



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 94/456 (20%), Positives = 179/456 (39%), Gaps = 81/456 (17%)

Query: 130 DCVVGVLKKLNELGVAP-----LELFDGSGFKLLKNECQRLLDSGEVEMF-VGLMEVLE- 182
           D  V + +++ +LG+ P       L   +    L +  Q  +D  +   F +GL E +E 
Sbjct: 269 DTAVELFEEMEKLGIVPDRITFTGLVSATTAAGLWDRAQSFIDMMQARGFSIGLHEYIEM 328

Query: 183 -----EFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237
                  R P     E + + Q       V L   Y   +   + L C + R        
Sbjct: 329 QWACARARKP----REAYGLFQ-------VMLEQGYELKLESYNALLCAYER----TAQW 373

Query: 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
             A+R +   +    +P++    ++I  C   G   ++  + E +++ +   N+  +  L
Sbjct: 374 EDAMRTFIWIQDKGLTPDVMSWSSLISACANAGQAERALEVLERMKTSDCQPNVVSWCGL 433

Query: 298 MNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           +       + +   E++  M   G   +  ++  LL A          +++   ++ LE 
Sbjct: 434 LKAYQKTGNWEKAEEIFHAMLDSGCPPNEVAWCSLLSA---YEKGRQWKKVLYTIEKLEE 490

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
            G +KLDV  +ST +   A A  W++A +  + M  +G  PN +T+SSLI A  + GL E
Sbjct: 491 LG-MKLDVVAWSTTISALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLIKAYGDVGLWE 549

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
           +A  +F+ ML+ G  PN Q C  LL+A  +  + ++    F                   
Sbjct: 550 KAESVFKLMLRVGIRPNPQACCALLRAYGKGKELEKVIIFF------------------- 590

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVK 533
                                       S + ++  +P    Y  +  AC  C ++ R  
Sbjct: 591 ---------------------------ESMEPQYGVEPDKYAYAAIFWACWTCGEWQRAV 623

Query: 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             ++ M   G +P+ + +T LI+    +G ++ A+Q
Sbjct: 624 KYIDRMEMAGCTPDSVIYTTLINMYEANGQIDKAMQ 659



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 93/241 (38%), Gaps = 35/241 (14%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
           L++DV + + +V      + W  A KV     SAGV PN    ++LI A      + QA+
Sbjct: 178 LRVDVRSMNVVVWQLGQMQNWYAATKVFRAFRSAGVEPNAYVCTTLIAALGCGRRLSQAL 237

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--------LSKTQVALGE 470
            LF  M +AG E      N L+ AC      D A  LF            ++ T +    
Sbjct: 238 KLFRWMEKAGIERPIFTFNALMVACGRCASGDTAVELFEEMEKLGIVPDRITFTGLVSAT 297

Query: 471 DYDGNTDR--------------ISNMEHKDKQSITNTPNFVPNSHYSSFDKRF--SFKPT 514
              G  DR              I   E+ + Q         P   Y  F       ++  
Sbjct: 298 TAAGLWDRAQSFIDMMQARGFSIGLHEYIEMQWACARAR-KPREAYGLFQVMLEQGYELK 356

Query: 515 TTTYNILMKACCTDYYRVKALMNEMRTV------GLSPNHISWTILIDACGGSGNVEGAL 568
             +YN L+ A    Y R     + MRT       GL+P+ +SW+ LI AC  +G  E AL
Sbjct: 357 LESYNALLCA----YERTAQWEDAMRTFIWIQDKGLTPDVMSWSSLISACANAGQAERAL 412

Query: 569 Q 569
           +
Sbjct: 413 E 413



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 95/239 (39%), Gaps = 48/239 (20%)

Query: 262 IIDVCGI------CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYK 313
           ++  CG+       G++ K+  I+  +       N   + SL++        K  L   +
Sbjct: 427 VVSWCGLLKAYQKTGNWEKAEEIFHAMLDSGCPPNEVAWCSLLSAYEKGRQWKKVLYTIE 486

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
            +++LG+  D+ +++  + A   AG   LA+E +   K +   G L  ++ TYS+++K +
Sbjct: 487 KLEELGMKLDVVAWSTTISALAKAGQWELAEEKF---KQMTKSGCLP-NIVTYSSLIKAY 542

Query: 374 ADAKWWQMALKVKEDMLSAGVTPN------------------------------------ 397
            D   W+ A  V + ML  G+ PN                                    
Sbjct: 543 GDVGLWEKAESVFKLMLRVGIRPNPQACCALLRAYGKGKELEKVIIFFESMEPQYGVEPD 602

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
              ++++  AC   G  ++A+   + M  AGC P+S     L+       Q D+A ++ 
Sbjct: 603 KYAYAAIFWACWTCGEWQRAVKYIDRMEMAGCTPDSVIYTTLINMYEANGQIDKAMQVL 661



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 99/243 (40%), Gaps = 46/243 (18%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR----A 277
           + +C  ++ + K  +   A   + A       PN       +  C +   Y K R     
Sbjct: 428 VSWCGLLKAYQKTGNWEKAEEIFHAMLDSGCPPNE------VAWCSLLSAYEKGRQWKKV 481

Query: 278 IY--EDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKA 333
           +Y  E L    + L++  +++ ++  A   ++ L  E +K M K G + ++ +Y+ L+KA
Sbjct: 482 LYTIEKLEELGMKLDVVAWSTTISALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLIKA 541

Query: 334 CCLAGNTVLAQEI----------------------YGEVKHLEAKGV----------LKL 361
               G    A+ +                      YG+ K LE   +          ++ 
Sbjct: 542 YGDVGLWEKAESVFKLMLRVGIRPNPQACCALLRAYGKGKELEKVIIFFESMEPQYGVEP 601

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D + Y+ I         WQ A+K  + M  AG TP+++ +++LIN     G +++AM + 
Sbjct: 602 DKYAYAAIFWACWTCGEWQRAVKYIDRMEMAGCTPDSVIYTTLINMYEANGQIDKAMQVL 661

Query: 422 EEM 424
           E M
Sbjct: 662 ERM 664


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 139/305 (45%), Gaps = 23/305 (7%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGV 320
           + G+C  G +     +  ++  +N+  ++  F++L++V   + K     E+Y  M   G+
Sbjct: 287 IGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI 346

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             D  +YN L+   C       A +++     + +KG  + D+ TYS ++  +  AK   
Sbjct: 347 APDTITYNSLIDGFCKENCLHEANQMF---DLMVSKGC-EPDIVTYSILINSYCKAKRVD 402

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
             +++  ++ S G+ PNTIT+++L+     +G +  A  LF+EM+  G  P+     ILL
Sbjct: 403 DGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILL 462

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
               +  + ++A  +F     S+  + +G  Y+     + N    D             S
Sbjct: 463 DGLCDNGELNKALEIFEKMQKSRMTLGIGI-YNIIIHGMCNASKVDDAW----------S 511

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA- 557
            + S   +   KP   TYN+++   C      +A  L  +M+  G +P+  ++ ILI A 
Sbjct: 512 LFCSLSDK-GVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 570

Query: 558 CGGSG 562
            GGSG
Sbjct: 571 LGGSG 575



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 129/296 (43%), Gaps = 55/296 (18%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACC 335
           ++  +  +N+  ++  ++ +++    D  F   L ++  M+  G+ AD+ +Y+ L+   C
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 291

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G      ++   ++ +  + ++  DV T+S ++ VF        A ++  +M++ G+ 
Sbjct: 292 NDGKWDDGAKM---LREMIGRNIIP-DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIA 347

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+TIT++SLI+       + +A  +F+ M+  GCEP+    +IL+ +  +A + D   RL
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           FR                                  ++   +PN               T
Sbjct: 408 FRE--------------------------------ISSKGLIPN---------------T 420

Query: 516 TTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            TYN L+   C        K L  EM + G+ P+ +++ IL+D    +G +  AL+
Sbjct: 421 ITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALE 476



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 110/246 (44%), Gaps = 11/246 (4%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YM 273
           I+P   + F   +  F K+  L+ A   Y+       +P+     ++ID  G C +    
Sbjct: 311 IIPDV-VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID--GFCKENCLH 367

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           ++  +++ + S+    +I  ++ L+N    A  +   + +++ +   G++ +  +YN L+
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C +G    A+E++ E   + ++GV    V TY  ++    D      AL++ E M  
Sbjct: 428 LGFCQSGKLNAAKELFQE---MVSRGVPP-SVVTYGILLDGLCDNGELNKALEIFEKMQK 483

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           + +T     ++ +I+   NA  V+ A  LF  +   G +P+    N+++    +      
Sbjct: 484 SRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSE 543

Query: 452 AFRLFR 457
           A  LFR
Sbjct: 544 ADMLFR 549



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 117/291 (40%), Gaps = 31/291 (10%)

Query: 294 FNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           FN L +  A   ++ L +   K M+  G+  DM +  I++   C     + A  + G   
Sbjct: 73  FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAW 132

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            L  +     D  T+ST+V  F        A+ + + M+     P+ +T S+LIN     
Sbjct: 133 KLGYEP----DTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLK 188

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-----TLSKTQV 466
           G V +A+ L + M++ G +P+      +L    ++     A  LFR         S  Q 
Sbjct: 189 GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQY 248

Query: 467 ALGED---YDGNTDR----ISNMEHKD-KQSITNTPNFVP----NSHYSSFDKRF----- 509
           ++  D    DG+ D      + ME K  K  +    + +     +  +    K       
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 308

Query: 510 -SFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
            +  P   T++ L+     +      K L NEM T G++P+ I++  LID 
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDG 359



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 13/205 (6%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+  V G C  G    ++ +++++ S+ V  ++  +  L++   +  +L   L
Sbjct: 418 PNTITYNTL--VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 475

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+++ MQK  +   +  YNI++   C A     A  ++     L  KGV K DV TY+ +
Sbjct: 476 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFC---SLSDKGV-KPDVVTYNVM 531

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAG 428
           +           A  +   M   G TP+  T++ LI A    +GL+  ++ L EEM   G
Sbjct: 532 IGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLI-SSVELIEEMKVCG 590

Query: 429 CEPNSQCCNILLQACVEACQFDRAF 453
              +S    +++    +  + D++F
Sbjct: 591 FSADSSTIKMVIDMLSDR-RLDKSF 614


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 151/336 (44%), Gaps = 44/336 (13%)

Query: 249 KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLK 306
           + L +PN++    +ID     G+  ++R+++  ++      ++  FNSL++      +L 
Sbjct: 181 EQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELD 240

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
              ++ + M++ G  AD+ +YN L+   C  G     +  YG    ++ +GV+  +V T+
Sbjct: 241 EVEQLVEEMRRSGCKADVVTYNALINCFCKFGRM---ETAYGYFAAMKREGVMA-NVVTF 296

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           ST V  F      + A+K+   M   G+  N  T++ LI+    AG ++ A+ L +EM++
Sbjct: 297 STFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVR 356

Query: 427 AGCEPNSQCCNILLQA-CVE--ACQFDRAFRLF-----RSWTLSKTQVALGEDYDGNTDR 478
            G   N     +L+   C E    + +   R+      R+  L  T +  G   + N+++
Sbjct: 357 QGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEK 416

Query: 479 ----ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RV 532
               +S M++K                          +   + Y  L++  C  +     
Sbjct: 417 ALGLLSEMKNK------------------------GLELDISLYGALIQGLCNVHKLDEA 452

Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           K+L+ +M   GL PN+I +T ++DAC  SG V  A+
Sbjct: 453 KSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAI 488



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 140/351 (39%), Gaps = 55/351 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F  FV  F K+  +  A++ +   +    + N +    +ID     G    +  + ++
Sbjct: 294 VTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDE 353

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q V LN+  +  L++    + K     +V + M+K GV A+   Y  L+    +  N
Sbjct: 354 MVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKN 413

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           +  A  +  E+K+   KG L+LD+  Y  +++   +      A  +   M  +G+ PN I
Sbjct: 414 SEKALGLLSEMKN---KG-LELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYI 469

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++++++AC  +G V +A+ + +++L +G +PN      L+    +A   D A       
Sbjct: 470 IYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI------ 523

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                                   SH++   +     P    Y 
Sbjct: 524 ----------------------------------------SHFNKM-RDLGLDPNVQAYT 542

Query: 520 ILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            L+   C +    +A  L NEM   G+S + + +T L+D     GN+  A 
Sbjct: 543 ALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAF 593



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 87/204 (42%), Gaps = 33/204 (16%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN  I  T++D C   G   ++ A+ + +       N+  + +L++    A  +   +  
Sbjct: 466 PNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISH 525

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH------------------- 352
           +  M+ LG+  ++ +Y  L+   C  G    A +++ E+ H                   
Sbjct: 526 FNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLK 585

Query: 353 ---------LEAKGV---LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
                    L+AK +   L+LD+F Y+  +  F +      A +V  +M+  G+ P+   
Sbjct: 586 QGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAV 645

Query: 401 WSSLINACANAGLVEQAMHLFEEM 424
           ++ LI+     G +E+A+ L +EM
Sbjct: 646 YNCLISKYQKLGNLEEAISLQDEM 669



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 82/197 (41%), Gaps = 6/197 (3%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+  +  +++++ + L+I ++ +L+    N H L     +   M + G+  +   Y  ++
Sbjct: 416 KALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMM 475

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            AC  +G      E    ++ +   G  + +V TY  ++     A     A+     M  
Sbjct: 476 DACFKSGKV---PEAIAMLQKILDSG-FQPNVITYCALIDGLCKAGSIDEAISHFNKMRD 531

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+ PN   +++L++     G + +A+ LF EM+  G   +      LL   ++      
Sbjct: 532 LGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHD 591

Query: 452 AFRLFRSWTLSKTQVAL 468
           AF L      S  Q+ L
Sbjct: 592 AFALKAKMIDSGLQLDL 608


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 150/355 (42%), Gaps = 62/355 (17%)

Query: 217 VPRADILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
           +P A +++ + +R F   G+K D     + Y+   +   SP++ +  T +D     G+  
Sbjct: 511 IPNA-VVYTSLIRNFFKCGRKED---GHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIE 566

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K RA+++++++     +   +  L++  V A       E++  M++ G + D  +YN ++
Sbjct: 567 KGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVI 626

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C +G    A ++  E+K    KG  +  V TY +++   A       A  + E+  S
Sbjct: 627 DGFCKSGKVNKAYQLLEEMK---TKG-HEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 682

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+  N + +SSLI+     G +++A  + EE++Q G  PN    N LL A V+A +   
Sbjct: 683 KGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISE 742

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           A   F+S                             + +  TPN++              
Sbjct: 743 ALVCFQSM----------------------------KDLKCTPNYI-------------- 760

Query: 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
                TY+IL+   C    + +      EM+  G  PN  ++T +I     +GN+
Sbjct: 761 -----TYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNI 810



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 107/239 (44%), Gaps = 19/239 (7%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           L  A   ++ +K      N+ I  ++ID  G  G   ++  I E+L  + +T N+Y +N 
Sbjct: 670 LDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 729

Query: 297 LMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           L++  V A ++   L  +++M+ L    +  +Y+IL+   C       A   + E++   
Sbjct: 730 LLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQ--- 786

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            K   K +VFTY+T++   A A     A  + E     G   ++  ++++I   +NA   
Sbjct: 787 -KQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRA 845

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQA-----CVEAC--------QFDRAFRLFRSWT 460
             A  LFEE    GC   ++ C +LL +     C+E          +  +A    RSWT
Sbjct: 846 SDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQAAIVGAVLRETAKAQHAARSWT 904



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 139/338 (41%), Gaps = 40/338 (11%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           GK  D  S L   +  ++    P++     I+   G  G   ++   +E+++   +  N+
Sbjct: 354 GKFEDAYSLL---ERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NL 409

Query: 292 YVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             +N ++++   A  L+  L V   M+  G+  ++ + NI++   C A     A  I+  
Sbjct: 410 STYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEG 469

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           + H       + D  TY ++++          A K+ E ML A   PN + ++SLI    
Sbjct: 470 LDH----KTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFF 525

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
             G  E    ++ EML+ GC P+    N  +    +A + ++   LF+            
Sbjct: 526 KCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQE----------- 574

Query: 470 EDYDGNTDRISNMEH-KDKQSITNTPNFVPNSHYS--SFDKRFSFKPT-----TTTYNIL 521
                    I N+    D +S T   + +  + ++  +++  ++ K       T  YN +
Sbjct: 575 ---------IKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTV 625

Query: 522 MKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
           +   C      KA  L+ EM+T G  P  +++  +ID 
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDG 663



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 37/259 (14%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L +++ MQ+LG   ++  +  L++     G    A  +  E+K       L+ DV  Y+ 
Sbjct: 220 LTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMK----SNSLEPDVVLYNV 275

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            +  F  A    MA K   +M + G+  + +T++S+I     A  + +A+ LFE M Q  
Sbjct: 276 CIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNK 335

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDR-I 479
             P +   N ++     A +F+ A+ L             +S   +       G  D  +
Sbjct: 336 QVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEAL 395

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--N 537
              E   K +I                      P  +TYNI++   C       AL+  +
Sbjct: 396 KKFEEMKKDAI----------------------PNLSTYNIMIDMLCKAGKLETALVVRD 433

Query: 538 EMRTVGLSPNHISWTILID 556
            M+  GL PN I+  I++D
Sbjct: 434 AMKDAGLFPNVITVNIMVD 452



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/232 (17%), Positives = 106/232 (45%), Gaps = 7/232 (3%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           + N +      RD    L  +   ++   + N+++  T+I V    G    + ++ ++++
Sbjct: 203 YTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMK 262

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           S ++  ++ ++N  ++    A  +    + +  M+  G++ D  +Y  ++   C A    
Sbjct: 263 SNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLN 322

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A E++   +H++    +    + Y+T++  +  A  ++ A  + E     G  P+ +++
Sbjct: 323 EAVELF---EHMDQNKQVPC-AYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSY 378

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + +++     G V++A+  FEEM +    PN    NI++    +A + + A 
Sbjct: 379 NCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETAL 429


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 135/324 (41%), Gaps = 65/324 (20%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           +PN+    ++ID  G+C  G    ++ +++ +  + +  N+  +NSL++     + +   
Sbjct: 368 TPNVITYSSLID--GLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSA 425

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L + + M   G + D+ +YN L+   C  G    A  ++G++K   AK     DV TYS 
Sbjct: 426 LLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMK---AK-FCNPDVITYSC 481

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F   +   MA  + +DML   V P+ +T+S+L+    NAGLV+ A  L EEM+ + 
Sbjct: 482 LIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASD 541

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           C P+      L+    +  +   A R+ +       Q                       
Sbjct: 542 CSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQ----------------------- 578

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-----TDYYRVKALMNEMRTVG 543
                                   P   TY  L+ A C     T  YR   L+ EM   G
Sbjct: 579 ------------------------PNVVTYTALIDAFCRAGKPTVAYR---LLEEMVGNG 611

Query: 544 LSPNHISWTILIDACGGSGNVEGA 567
           + PN I++  LI    G+G++E A
Sbjct: 612 VQPNVITYRSLIGGFCGTGDLEEA 635



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 121/298 (40%), Gaps = 36/298 (12%)

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
            RS     N+  +  +++    A+ L      +  M+K G + +  +YN+L+   C    
Sbjct: 117 FRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHK 176

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
                  Y  +K ++  G L  +V TYST++  F        A K+   M+  G  PN +
Sbjct: 177 V---HRAYLLLKEMKESG-LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLV 232

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+++L++     GL+++A  L +EM + G +P+    + L+    +  + D A ++F   
Sbjct: 233 TYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDN 292

Query: 460 T--------LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           +        ++ + +  G    G  D    +  K +++                    S 
Sbjct: 293 SNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMREN--------------------SC 332

Query: 512 KPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           +P   T+  LM   C        + ++  M     +PN I+++ LID    +G V  A
Sbjct: 333 EPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDA 390



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 115/290 (39%), Gaps = 62/290 (21%)

Query: 286 NVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            +T N++ +  ++     + DL    E+ + M++ G + D A YN ++ A C A NT  A
Sbjct: 54  GITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKA 113

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            + +   + +E +     +V T++ ++     A     A      M   G  PN  T++ 
Sbjct: 114 LDYF---RSMECEK----NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNV 166

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           LIN       V +A  L +EM ++G  PN    + ++       + D A++LFR      
Sbjct: 167 LINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFR------ 220

Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITN--TPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
                                   Q + N   PN V                   TYN L
Sbjct: 221 ------------------------QMVENGCMPNLV-------------------TYNTL 237

Query: 522 MKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +   C +    +A  L++EMR  GL P+  S+  L+     +G ++ AL+
Sbjct: 238 LSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALK 287



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 91/198 (45%), Gaps = 21/198 (10%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +V+TY+ + +    A+       + ++    G+TPN  T++ +I     +G +++A  L 
Sbjct: 23  NVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELL 82

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG--NTDRI 479
           EEM ++G  P++   N ++ A  +A    +A   FRS    K  +      DG    +R+
Sbjct: 83  EEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRL 142

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY--YRVKALMN 537
                               ++++   K+ +  P   TYN+L+   C  +  +R   L+ 
Sbjct: 143 PE----------------ATTYFAKMKKKGTV-PNEWTYNVLINGFCKVHKVHRAYLLLK 185

Query: 538 EMRTVGLSPNHISWTILI 555
           EM+  GL+PN ++++ +I
Sbjct: 186 EMKESGLAPNVVTYSTVI 203



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/354 (20%), Positives = 149/354 (42%), Gaps = 28/354 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IY 279
           + +   +  F ++  + +A + +    ++   PN+    T++   G+C + +   A  + 
Sbjct: 197 VTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS--GLCRNGLMDEAYELL 254

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           +++R + +  + + +++LM        +   L+V+++        D+ +Y+ L+   C A
Sbjct: 255 DEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKA 314

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A +++ +++    +   + DV T++ ++         Q A +V E M     TPN
Sbjct: 315 GRLDEACKLFEKMR----ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN 370

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            IT+SSLI+     G V  A  +F+ M+  G EPN    N L+         D A  L  
Sbjct: 371 VITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLME 430

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF-KPTTT 516
             T +              D I+     D    T      P ++    D +  F  P   
Sbjct: 431 EMTATGCL----------PDIITYNTLIDGLCKTGR---APEANRLFGDMKAKFCNPDVI 477

Query: 517 TYNILMKACCTDYYRV---KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           TY+ L+   C    R+   + L ++M    + P+ ++++ L++    +G V+ A
Sbjct: 478 TYSCLIGGFCK-LERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDA 530



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 6/152 (3%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +R +++D+  Q V  ++  F++L+    NA  +     + + M       D+ +Y  L+ 
Sbjct: 495 ARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 554

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G  V A+ +   +K +  +G  + +V TY+ ++  F  A    +A ++ E+M+  
Sbjct: 555 GFCKVGRMVEARRV---LKRMAKRGC-QPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGN 610

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           GV PN IT+ SLI      G +E+A  + E +
Sbjct: 611 GVQPNVITYRSLIGGFCGTGDLEEARKILERL 642



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 8/206 (3%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           + + V  F K   +V A R      K    PN+     +ID     G    +  + E++ 
Sbjct: 549 YTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMV 608

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNT 340
              V  N+  + SL+       DL+   ++ + +++     ADM +Y +++   C  G  
Sbjct: 609 GNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRM 668

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM-LSAGVTPNTI 399
             A E+   +K  ++    + D+  Y  +++     K    A++V E+M LS    PN  
Sbjct: 669 SAALELLEAIK--QSGTPPRHDI--YVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAE 724

Query: 400 TWSSLINACANAGLVEQAMHLFEEML 425
            + ++I   A  G  E+A  L +E+L
Sbjct: 725 AYEAVIQELAREGRHEEANALADELL 750


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 150/355 (42%), Gaps = 62/355 (17%)

Query: 217 VPRADILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
           +P A +++ + +R F   G+K D     + Y+   +   SP++ +  T +D     G+  
Sbjct: 511 IPNA-VVYTSLIRNFFKCGRKED---GHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIE 566

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K RA+++++++     +   +  L++  V A       E++  M++ G + D  +YN ++
Sbjct: 567 KGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVI 626

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C +G    A ++  E+K    KG  +  V TY +++   A       A  + E+  S
Sbjct: 627 DGFCKSGKVNKAYQLLEEMK---TKG-HEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 682

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+  N + +SSLI+     G +++A  + EE++Q G  PN    N LL A V+A +   
Sbjct: 683 KGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISE 742

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           A   F+S                             + +  TPN++              
Sbjct: 743 ALVCFQSM----------------------------KDLKCTPNYI-------------- 760

Query: 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
                TY+IL+   C    + +      EM+  G  PN  ++T +I     +GN+
Sbjct: 761 -----TYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNI 810



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 107/239 (44%), Gaps = 19/239 (7%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           L  A   ++ +K      N+ I  ++ID  G  G   ++  I E+L  + +T N+Y +N 
Sbjct: 670 LDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 729

Query: 297 LMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           L++  V A ++   L  +++M+ L    +  +Y+IL+   C       A   + E++   
Sbjct: 730 LLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQ--- 786

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            K   K +VFTY+T++   A A     A  + E     G   ++  ++++I   +NA   
Sbjct: 787 -KQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRA 845

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQA-----CVEAC--------QFDRAFRLFRSWT 460
             A  LFEE    GC   ++ C +LL +     C+E          +  +A    RSWT
Sbjct: 846 SDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQAAIVGAVLRETAKAQHAARSWT 904



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 139/338 (41%), Gaps = 40/338 (11%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           GK  D  S L   +  ++    P++     I+   G  G   ++   +E+++   +  N+
Sbjct: 354 GKFEDAYSLL---ERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NL 409

Query: 292 YVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             +N ++++   A  L+  L V   M+  G+  ++ + NI++   C A     A  I+  
Sbjct: 410 STYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEG 469

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           + H       + D  TY ++++          A K+ E ML A   PN + ++SLI    
Sbjct: 470 LDH----KTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFF 525

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
             G  E    ++ EML+ GC P+    N  +    +A + ++   LF+            
Sbjct: 526 KCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQE----------- 574

Query: 470 EDYDGNTDRISNMEH-KDKQSITNTPNFVPNSHYS--SFDKRFSFKPT-----TTTYNIL 521
                    I N+    D +S T   + +  + ++  +++  ++ K       T  YN +
Sbjct: 575 ---------IKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTV 625

Query: 522 MKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
           +   C      KA  L+ EM+T G  P  +++  +ID 
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDG 663



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 105/234 (44%), Gaps = 8/234 (3%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           F K   +  A +  +  K     P +    ++ID         ++  ++E+ +S+ + LN
Sbjct: 629 FCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELN 688

Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLAGNTVLAQEIY 347
           + +++SL++      +   E Y  M++L   G+  ++ ++N LL A   A     A   +
Sbjct: 689 VVIYSSLIDGFGKVGRID-EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCF 747

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             +K L+       +  TYS ++      + +  A    ++M   G  PN  T++++I+ 
Sbjct: 748 QSMKDLKCTP----NYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISG 803

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
            A AG + +A  LFE+  + G   +S   N +++    A +   A+RLF    L
Sbjct: 804 LAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARL 857



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 37/259 (14%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L +++ MQ+LG   ++  +  L++     G    A  +  E+K       L+ DV  Y+ 
Sbjct: 220 LTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMK----SNSLEPDVVLYNV 275

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            +  F  A    MA K   +M + G+  + +T++S+I     A  + +A+ LFE M Q  
Sbjct: 276 CIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNK 335

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDR-I 479
             P +   N ++     A +F+ A+ L             +S   +       G  D  +
Sbjct: 336 QVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEAL 395

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--N 537
              E   K +I                      P  +TYNI++   C       AL+  +
Sbjct: 396 KKFEEMKKDAI----------------------PNLSTYNIMIDMLCKAGKLETALVVRD 433

Query: 538 EMRTVGLSPNHISWTILID 556
            M+  GL PN I+  I++D
Sbjct: 434 AMKDAGLFPNVITVNIMVD 452



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/232 (17%), Positives = 106/232 (45%), Gaps = 7/232 (3%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           + N +      RD    L  +   ++   + N+++  T+I V    G    + ++ ++++
Sbjct: 203 YTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMK 262

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           S ++  ++ ++N  ++    A  +    + +  M+  G++ D  +Y  ++   C A    
Sbjct: 263 SNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLN 322

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A E++   +H++    +    + Y+T++  +  A  ++ A  + E     G  P+ +++
Sbjct: 323 EAVELF---EHMDQNKQVPC-AYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSY 378

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + +++     G V++A+  FEEM +    PN    NI++    +A + + A 
Sbjct: 379 NCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETAL 429


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 135/329 (41%), Gaps = 24/329 (7%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           KK  LVSA    +  +     PN+     +ID     G   ++R + +++  + + LN  
Sbjct: 401 KKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAV 460

Query: 293 VFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +N L++    D K    L ++ +M   G   D+ ++N L+   C        +E  G  
Sbjct: 461 GYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK---FEEALGLY 517

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + +  +GV+  +  TY+T++  F      Q ALK+  DML  G   + IT++ LI A   
Sbjct: 518 QDMLLEGVIA-NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCR 576

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
           AG +E+ + LFE+M+  G  PN+  CNIL+           A    R          L  
Sbjct: 577 AGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDM----IHRGLTP 632

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYNILMKACCTD 528
           D       I+ +    +               + FDK       P   TYN L+   C +
Sbjct: 633 DIVTYNSLINGLCKTGRAQ----------EALNLFDKLQVEGICPDAITYNTLISWHCKE 682

Query: 529 --YYRVKALMNEMRTVGLSPNHISWTILI 555
             +     L++     G  PN ++W IL+
Sbjct: 683 GMFDDAHLLLSRGVDSGFIPNEVTWYILV 711



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 49/245 (20%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+FTY+T++       +   A ++  +M   G  PN IT++ LI+     G +E+A ++ 
Sbjct: 388 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 447

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--------------------L 461
           +EM   G   N+   N L+ A  +  +   A  +F   +                    +
Sbjct: 448 DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKV 507

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT------- 514
           +K + ALG   D   + +          I NT  +  N+   +F +R + +         
Sbjct: 508 NKFEEALGLYQDMLLEGV----------IANTITY--NTLIHAFLRRGAMQEALKLVNDM 555

Query: 515 --------TTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
                     TYN L+KA C   +  +  AL  +M + GL+PN+IS  ILI+    +GN+
Sbjct: 556 LFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNI 615

Query: 565 EGALQ 569
           + AL+
Sbjct: 616 QHALE 620



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 117/303 (38%), Gaps = 43/303 (14%)

Query: 276 RAIYE---DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           R +Y      RS NV L++     L+  N    K    V+  M   G+   + ++ +++K
Sbjct: 173 RGVYSCEPTFRSYNVVLDV-----LLAGNCP--KVVPNVFYEMLSKGISPTVYTFGVVMK 225

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           A CL      A  +   +K +   G +  +   Y T++            LK+ E+ML  
Sbjct: 226 ALCLVNEVDSACAL---LKDMTRHGCVP-NAIVYQTLIHALXKVGRVNEVLKLLEEMLLM 281

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G  P+  T++  I+       + +A  L + ML  G  PNS    +L+       + D A
Sbjct: 282 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA 341

Query: 453 FRLFRSWTLSKTQVAL------GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
             L     +    V L      G    G  D    + H+   S+   P+           
Sbjct: 342 RMLLNK--VPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIF--------- 390

Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
                     TYN L+   C   Y V A  LMNEM+  G  PN I++TILID     G +
Sbjct: 391 ----------TYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRL 440

Query: 565 EGA 567
           E A
Sbjct: 441 EEA 443



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 6/139 (4%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G+  K  A++ED+ S+ +  N    N L+N      +++  LE  ++M   G+  D+ +Y
Sbjct: 578 GNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTY 637

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N L+   C  G    AQE       L+ +G+   D  TY+T++        +  A  +  
Sbjct: 638 NSLINGLCKTGR---AQEALNLFDKLQVEGICP-DAITYNTLISWHCKEGMFDDAHLLLS 693

Query: 388 DMLSAGVTPNTITWSSLIN 406
             + +G  PN +TW  L++
Sbjct: 694 RGVDSGFIPNEVTWYILVS 712


>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
          Length = 1420

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 128/277 (46%), Gaps = 11/277 (3%)

Query: 222  ILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTIIDVCGICGDYMKSRAIYE 280
            I+F   ++ F K   L  AL  Y   K      PN     ++ID C  C    K+  I+E
Sbjct: 807  IIFTTLIKGFAKSFKLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFE 866

Query: 281  DLRS--QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
            +++    +   ++  +++++       +++  L +  +M+K  +MAD   YN LL  CC 
Sbjct: 867  EMKQPISHTKPDLITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCCK 926

Query: 337  AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            A    +A ++Y  ++ L+    +K    TYS ++K++   +    AL V E+M   G+ P
Sbjct: 927  ANEIEMALKVYKNMEILK----IKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDGIRP 982

Query: 397  NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
              I ++ L+  C  +  ++ A  LF +M   G   +      ++  C+ + +FD    L 
Sbjct: 983  GLIVYTCLLQTCIKSRQLKTAEQLFHDMRIQGIRGDQLTYQTMINGCLYSQKFDSILILL 1042

Query: 457  RSWTLSKTQVA--LGEDYDGNTDRISNMEHKDKQSIT 491
            +  + SK Q+   L ++     ++ +   H+ KQ IT
Sbjct: 1043 KDASDSKVQLPHELSQNILTELNKWNTDNHQMKQEIT 1079



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 112/547 (20%), Positives = 215/547 (39%), Gaps = 100/547 (18%)

Query: 100 SEGNVSKFASMLSLEMVASGIVKS-----------IREGRIDCVVGVLKKLNELGVAPLE 148
           S+ N    A +L  EM+  G+  +           +R G  D    VL+++ E  V P  
Sbjct: 412 SKNNQIAKAFLLYDEMLGEGVTPTTITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDN 471

Query: 149 LFDGSGFKLLKNECQR------------LLDSGEVEMFVGLMEVLEEFRLPVKELD---E 193
               + FK +K+E QR            L +S +      L  VL +  +  K+LD   E
Sbjct: 472 YTYSTLFKGIKSENQRQDLEKAFVLYNQLQNSNDFTPDEILFNVLLDACINCKQLDRAVE 531

Query: 194 EFRIV------QLCV--------------------NKPDVNLAIRYACIVPRADILFCNF 227
            F+ +      Q+ V                    N P V  +  +  + P  +I F   
Sbjct: 532 LFKQLKPQSQPQIQVSNTDDADNSLSLEDSPDSAKNAPAVVNSSNHHFMRP-DEISFNTI 590

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           ++   +++ L  A   ++  K     PN     ++ID C  C     +  +  +++  N+
Sbjct: 591 IKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQLLSEMQQNNI 650

Query: 288 TLNIYVFNSLMN------------VNAHDLKFTLEVYKNMQKL--GVMADMASYNILLKA 333
             + + +++L+              N  DL+    + + M++   GV  D   YN L+ A
Sbjct: 651 VPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQMKQSNGGVKPDEILYNCLIDA 710

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
           C    +   A  ++ E++       +K    TY  ++K +  A     A  V + M    
Sbjct: 711 CVRFHDVNRAVAVFQEMQF----SNIKPSSVTYGILIKAYGSANQLDNAFFVFKKMKDNC 766

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + PN++T+  LI+AC     +E+AM +FE M + G + N+     L++   ++ + D+A 
Sbjct: 767 LIPNSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFKLDQAL 826

Query: 454 RLFRSWTLSK----TQVALGEDYD-----GNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
            +++   +        V      D      +  +   +  + KQ I++T           
Sbjct: 827 EVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHT----------- 875

Query: 505 FDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSG 562
                  KP   TY+ ++K  C +    +AL  +N+M    +  + + +  L+D C  + 
Sbjct: 876 -------KPDLITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCCKAN 928

Query: 563 NVEGALQ 569
            +E AL+
Sbjct: 929 EIEMALK 935



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 120/280 (42%), Gaps = 59/280 (21%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           DM +++ ++K  C A     A  +   +K    +G+ K D   Y++I+   +       A
Sbjct: 365 DMMTFSCMIKGYCRAQRLPQALNVLSIMKE---RGI-KPDEVLYNSIIDGCSKNNQIAKA 420

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC------ 436
             + ++ML  GVTP TIT++SLI+ C  +G  +QA  + E+M +   +P++         
Sbjct: 421 FLLYDEMLGEGVTPTTITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKG 480

Query: 437 ---------------------------------NILLQACVEACQFDRAFRLFRSWT-LS 462
                                            N+LL AC+   Q DRA  LF+     S
Sbjct: 481 IKSENQRQDLEKAFVLYNQLQNSNDFTPDEILFNVLLDACINCKQLDRAVELFKQLKPQS 540

Query: 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--YSSFDKRFSFKPTTTTYNI 520
           + Q+ +      NTD   N       S+ ++P+   N+    +S +  F  +P   ++N 
Sbjct: 541 QPQIQVS-----NTDDADN-----SLSLEDSPDSAKNAPAVVNSSNHHF-MRPDEISFNT 589

Query: 521 LMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDAC 558
           ++K C  +     A  + N M+   L PN +++  LIDAC
Sbjct: 590 IIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDAC 629



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 10/200 (5%)

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A++IY +V  L       +D+ T+S ++K +  A+    AL V   M   G+ P+ + ++
Sbjct: 346 AEQIYNKVFTLSKDQPNCMDMMTFSCMIKGYCRAQRLPQALNVLSIMKERGIKPDEVLYN 405

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           S+I+ C+    + +A  L++EML  G  P +   N L+  CV +   D+A+R+       
Sbjct: 406 SIIDGCSKNNQIAKAFLLYDEMLGEGVTPTTITFNSLIDCCVRSGNQDQAWRVLEQM--- 462

Query: 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
           K +    ++Y  +T          +Q +     FV    Y+       F P    +N+L+
Sbjct: 463 KEKQVKPDNYTYSTLFKGIKSENQRQDLEKA--FVL---YNQLQNSNDFTPDEILFNVLL 517

Query: 523 KAC--CTDYYRVKALMNEMR 540
            AC  C    R   L  +++
Sbjct: 518 DACINCKQLDRAVELFKQLK 537



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/391 (19%), Positives = 144/391 (36%), Gaps = 78/391 (19%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           ++L+ + +    K   +  A   YD       +P      ++ID C   G+  ++  + E
Sbjct: 401 EVLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPTTITFNSLIDCCVRSGNQDQAWRVLE 460

Query: 281 DLRSQNVTLNIYVFNSLMN-----VNAHDLKFTLEVYKNMQKLG-VMADMASYNILLKAC 334
            ++ + V  + Y +++L           DL+    +Y  +Q       D   +N+LL AC
Sbjct: 461 QMKEKQVKPDNYTYSTLFKGIKSENQRQDLEKAFVLYNQLQNSNDFTPDEILFNVLLDAC 520

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGV-----------------------------------L 359
                   A E++ ++K      +                                   +
Sbjct: 521 INCKQLDRAVELFKQLKPQSQPQIQVSNTDDADNSLSLEDSPDSAKNAPAVVNSSNHHFM 580

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           + D  +++TI+K  A  K  Q+A ++   M    + PN +T++SLI+AC     +  A  
Sbjct: 581 RPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQ 640

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           L  EM Q    P++   + L++               R+   S+  ++   D +     +
Sbjct: 641 LLSEMQQNNIVPDNFTYSTLIKG-------------IRAENQSQNGISNPMDLEKAFALL 687

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMN 537
             M    KQS                      KP    YN L+ AC    D  R  A+  
Sbjct: 688 EQM----KQS------------------NGGVKPDEILYNCLIDACVRFHDVNRAVAVFQ 725

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           EM+   + P+ +++ ILI A G +  ++ A 
Sbjct: 726 EMQFSNIKPSSVTYGILIKAYGSANQLDNAF 756


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 162/357 (45%), Gaps = 36/357 (10%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           AL  +   ++   +P +     ++DV G  G  + +  A+ +++R+  V  + +  ++++
Sbjct: 193 ALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVI 252

Query: 299 NVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                D  +   +  +++++  G    + +YN LL+    AGN   A  + GE   +E  
Sbjct: 253 AACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGE---MEQN 309

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  + D  TY+ +   +A A +++ A +  + M S G+ PN  T+++++ A  N G V++
Sbjct: 310 GC-QPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDE 368

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS---------KTQVA 467
           A+ LF++M + G  PN    N++L    +  +F     +    + S          T +A
Sbjct: 369 ALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLA 428

Query: 468 L-----GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK---------- 512
           +      EDY   T  +  M     +   +T N +  ++     +  +FK          
Sbjct: 429 VCGKRGMEDY--VTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGF 486

Query: 513 -PTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
            P  TTYN L+       D+   ++++++MRT G  PN  S+++L+      GNV G
Sbjct: 487 TPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAG 543



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 122/307 (39%), Gaps = 56/307 (18%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQK 317
           T++      G Y ++  ++ +LR Q V   +  +N +++V           + +   M+ 
Sbjct: 179 TVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRA 238

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            GV  D  + + ++ ACC  G   L  E     + L+A+G     V TY+ +++VF  A 
Sbjct: 239 AGVEPDGFTASTVIAACCRDG---LVDEAVAFFEDLKARGHAPC-VVTYNALLQVFGKAG 294

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
            +  AL+V  +M   G  P+ +T++ L    A AG  E+A    + M   G  PN+   N
Sbjct: 295 NYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYN 354

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
            ++ A     + D A  LF                    D++                  
Sbjct: 355 TVMTAYGNVGKVDEALALF--------------------DQM------------------ 376

Query: 498 PNSHYSSFDKRFSFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
                    K+  F P   TYN++  M    + +  +  ++ EM   G +PN ++W  ++
Sbjct: 377 ---------KKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTML 427

Query: 556 DACGGSG 562
             CG  G
Sbjct: 428 AVCGKRG 434



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 153/346 (44%), Gaps = 45/346 (13%)

Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305
           ASK  L  PN +   T++   G  G   ++ A+++ ++      N+  +N ++ +     
Sbjct: 342 ASKGLL--PNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKS 399

Query: 306 KFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           +FT  LE+   M + G   +  ++N +L  C   G   +   +   ++ + + GV +L  
Sbjct: 400 RFTVMLEMLGEMSRSGCTPNRVTWNTMLAVC---GKRGMEDYVTRVLEGMRSCGV-ELSR 455

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY+T++  +        A K+  +M SAG TP   T+++L+N  +  G    A  +  +
Sbjct: 456 DTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSK 515

Query: 424 MLQAGCEPNSQCCNILLQ-----------ACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
           M   G +PN Q  ++LLQ           A +E   +     +F SW + +T V      
Sbjct: 516 MRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSG-AVFPSWVILRTLVIA---- 570

Query: 473 DGNTDRISNME--HKDKQSITNTPNFV----------PNSHYSS----FD--KRFSFKPT 514
           +    R+  ME   ++ ++    P+ V           N  YS     FD  KR    P 
Sbjct: 571 NFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPD 630

Query: 515 TTTYNILMK--ACCTDYYRVKALMNEMR-TVGLSPNHISWTILIDA 557
             TYN LM   A C++ +  + ++N+++ +  + P+ +S+  +I+ 
Sbjct: 631 LITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVING 676



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 108/242 (44%), Gaps = 14/242 (5%)

Query: 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
             + P   IL    +  F K R L     A+   K    +P++ I  +++ +    G Y 
Sbjct: 555 GAVFPSWVILRTLVIANF-KCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYS 613

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG----VMADMASYNI 329
           K+  +++ ++   ++ ++  +NSLM++ A     + E  K + +L     +  D+ SYN 
Sbjct: 614 KATEVFDSIKRSGLSPDLITYNSLMDMYAK-CSESWEAEKILNQLKCSQTMKPDVVSYNT 672

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           ++   C  G    AQ +  E   + A G+    V TY T+V  ++  + +  A +V   M
Sbjct: 673 VINGFCKQGLVKEAQRVLSE---MVADGMAPCAV-TYHTLVGGYSSLEMFSEAREVIGYM 728

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
           +  G+ P  +T+  ++ +   A   E+A     E+ +   + + +     L+A +E  QF
Sbjct: 729 VQHGLKPMELTYRRVVESYCRAKRFEEARGFLSEVSETDLDFDKKA----LEAYIEDAQF 784

Query: 450 DR 451
            R
Sbjct: 785 GR 786



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 135/343 (39%), Gaps = 29/343 (8%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVT 288
            GKK      L       +   +PN     T++ VCG  G  DY+    + E +RS  V 
Sbjct: 395 LGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTR--VLEGMRSCGVE 452

Query: 289 LNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           L+   +N+L+         T   ++Y  M   G    + +YN LL      G+   AQ I
Sbjct: 453 LSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSI 512

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTPNTITWSSLI 405
              V  +  KG  K +  +YS +++ +A          ++ ++  +G V P+ +   +L+
Sbjct: 513 ---VSKMRTKG-FKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLV 568

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
            A      ++     F+E+   G  P+    N +L    +   + +A  +F S   S   
Sbjct: 569 IANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLS 628

Query: 466 VALGEDYDGNTDRISN-MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
             L   Y+   D  +   E  + + I N                 + KP   +YN ++  
Sbjct: 629 PDL-ITYNSLMDMYAKCSESWEAEKILN-----------QLKCSQTMKPDVVSYNTVING 676

Query: 525 CCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            C        + +++EM   G++P  +++  L+   GG  ++E
Sbjct: 677 FCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLV---GGYSSLE 716


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 158/351 (45%), Gaps = 34/351 (9%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A RA+DA         ++    +I      G   ++  + E ++   +      +N++++
Sbjct: 217 ARRAFDAGIAGGYGNTVFANSALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVID 276

Query: 300 V---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                  DL+FTL  ++ M +  +  D  ++N LL AC  AG+   A+ ++ E+ HL   
Sbjct: 277 ACGKGGVDLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHL--- 333

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G+ + D++TY+T +         ++A++V  DM +  V PN +T+S+LI+  +     ++
Sbjct: 334 GIGR-DIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDE 392

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL--------FRSWTLSKTQVAL 468
           A+ L+E+M   G + +  C N +L   V+A ++     +            T++   +  
Sbjct: 393 ALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLIN 452

Query: 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNS-----------HYSSFDKRFSFKPTTTT 517
           G    G  D +S +  +D +     P+ +  S           H  +F+    FK +   
Sbjct: 453 GYGKQGRLDIVSFLV-QDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLK 511

Query: 518 YNILMKACCTDYYR-------VKALMNEMRTVGLSPNHISWTILIDACGGS 561
            ++++ +   D            +L+N+M  +G+ PN +++  +IDA G S
Sbjct: 512 PDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKS 562



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 139/330 (42%), Gaps = 56/330 (16%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVY 312
           ++Y   T ID    CG+   +  +  D+ ++NV  N+  +++L++  +   K+   L++Y
Sbjct: 338 DIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLY 397

Query: 313 KNMQKLGVMADMASYNILLKACCLAG-------------------NTVLAQEI---YGEV 350
           + M+ LG+  D   YN +L     AG                   +TV    +   YG+ 
Sbjct: 398 EKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQ 457

Query: 351 KHLEAKGVLKLD---------VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
             L+    L  D         V TYST++ +++ A     A  V  D   +G+ P+ + +
Sbjct: 458 GRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLF 517

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           SS I+  A  GLVE A+ L  +M + G +PN    N ++ A              +S  L
Sbjct: 518 SSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDA------------FGKSKVL 565

Query: 462 SKTQVALGE-----DYDGNTDRISNMEHKDKQSITNTPNFVPNSHY--SSFDK--RFSFK 512
           S+     GE      Y+G   R +N   + + +I          ++    F K  +   +
Sbjct: 566 SEEDPEAGEMGIVGVYNGQIIRAANPVTRGRSAIDVRMRRSQELYFILELFQKMVQQGVR 625

Query: 513 PTTTTYNILMKAC--CTDYYRVKALMNEMR 540
           P   T++ ++ AC  C ++     L+ ++R
Sbjct: 626 PNVVTFSAILNACSRCNNFEDAALLLEQLR 655



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 108/220 (49%), Gaps = 17/220 (7%)

Query: 217 VPRADILFCNFVREFGK--KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           + +  + + + +  +GK  + D+VS L   D  ++ ++ P++    T+ID+    G +  
Sbjct: 440 IEKDTVTYNSLINGYGKQGRLDIVSFL-VQDMRRRGVA-PSVLTYSTLIDIYSKAGMHGD 497

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLK 332
           +  +Y D +   +  ++ +F+S ++  A +  +++ L +  +M ++G+  ++ +YN ++ 
Sbjct: 498 AFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIID 557

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM--------ALK 384
           A     + VL++E   E   +   GV    +   +  V     A   +M         L+
Sbjct: 558 A--FGKSKVLSEED-PEAGEMGIVGVYNGQIIRAANPVTRGRSAIDVRMRRSQELYFILE 614

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           + + M+  GV PN +T+S+++NAC+     E A  L E++
Sbjct: 615 LFQKMVQQGVRPNVVTFSAILNACSRCNNFEDAALLLEQL 654


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 61/306 (19%)

Query: 273 MKSRAI--YEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYN 328
           MK  AI  +E +       +++    L+N  A D       +VYK M ++GV A++  YN
Sbjct: 145 MKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYN 204

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           +L+ ACC +G+   A  +  E   +E+K V   D+FTY+T++ ++        AL V++ 
Sbjct: 205 VLIHACCKSGDVEKADNLLSE---MESKCVFP-DLFTYNTLISLYCKKGMHYEALSVQDR 260

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M   G+ P+ +T++SLI+     G + +AM LF+E+  A   PN      L+        
Sbjct: 261 MEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDA--TPNHVTYTTLIDGYCRLND 318

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
            D+A RL                           E  + Q +                  
Sbjct: 319 LDQALRL--------------------------REEMEAQGLY----------------- 335

Query: 509 FSFKPTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
               PT  TYN +++  C +  R++    L+NEM    + P++++   LI+A    G+++
Sbjct: 336 ----PTVVTYNSILRKLC-EIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMK 390

Query: 566 GALQCR 571
            AL+ +
Sbjct: 391 SALKVK 396



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 94/190 (49%), Gaps = 8/190 (4%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD-LKF-TLEVY 312
           N+++   +I  C   GD  K+  +  ++ S+ V  +++ +N+L+++     + +  L V 
Sbjct: 199 NIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQ 258

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M++ G+  D+ +YN L+   C  G    A  ++ E++      V      TY+T++  
Sbjct: 259 DRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDATPNHV------TYTTLIDG 312

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +        AL+++E+M + G+ P  +T++S++      G +  A  L  EM +   EP+
Sbjct: 313 YCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPD 372

Query: 433 SQCCNILLQA 442
           +  CN L+ A
Sbjct: 373 NVTCNTLINA 382



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 26/213 (12%)

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           +S +V V+A+ K  Q A++V E M+  G  P+    + L+N+ A   L +    ++++M 
Sbjct: 133 FSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMA 192

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
           + G E N    N+L+ AC ++   ++A  L       +++    + +  NT  IS    K
Sbjct: 193 RIGVEANIHVYNVLIHACCKSGDVEKADNLLSE---MESKCVFPDLFTYNT-LISLYCKK 248

Query: 486 DKQSITNTPNFVPNSHYSSFD-----KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNE 538
                          HY +       +R   KP   TYN L+   C +    +A  L  E
Sbjct: 249 -------------GMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKE 295

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           +R    +PNH+++T LID      +++ AL+ R
Sbjct: 296 IRDA--TPNHVTYTTLIDGYCRLNDLDQALRLR 326



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 117/257 (45%), Gaps = 16/257 (6%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKS 275
           + DI+  N  +  F K+  +  A+R +   +   ++PN     T+ID  G C   D  ++
Sbjct: 267 KPDIVTYNSLIHGFCKEGRMREAMRLFKEIRD--ATPNHVTYTTLID--GYCRLNDLDQA 322

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
             + E++ +Q +   +  +NS++        ++   ++   M +  +  D  + N L+ A
Sbjct: 323 LRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINA 382

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C  G+   A +    VK+   +  LKLD FTY  ++  F   +    A ++   ML AG
Sbjct: 383 YCKIGDMKSALK----VKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAG 438

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
            +P+  T+S L++   N    E  + L +E ++ G   +      L++   +  Q D A 
Sbjct: 439 FSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAK 498

Query: 454 RLFRSWTLSKTQVALGE 470
           ++F   +L + +  LG+
Sbjct: 499 KIF---SLMQEKGTLGD 512


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 62/349 (17%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +C+ +    +  D+  A+  ++ + +    PN+ +C T++                + L 
Sbjct: 358 YCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLV----------------KGLS 401

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            Q + L                   L++   M + G   D+ +YN+++   C  G    A
Sbjct: 402 QQGLILQ-----------------ALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDA 444

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
             +   V    AKG L  DVFT++T++  +        A+++ + M + GV+P+ IT++S
Sbjct: 445 DNL---VIDAIAKGHLP-DVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNS 500

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--- 460
           ++N    AG  E  M  F+ M++ GC PN    NIL ++  +A + + A  L        
Sbjct: 501 ILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKG 560

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF---DKRFSFKPTTTT 517
           L+   V  G    G  D                 N   +  Y  F   D+++ F  T  T
Sbjct: 561 LTPDVVNFGTLMKGFCD-----------------NGDLDGAYQLFKRVDEQYKFSHTIAT 603

Query: 518 YNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           YNI++ A     +    + L N+M   G SP+  ++ ++ID    +GN+
Sbjct: 604 YNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNI 652



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 134/331 (40%), Gaps = 40/331 (12%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASY 327
           G   ++  ++E +   N   ++  +N++MN+      F    +VY  M+  G++ D+ ++
Sbjct: 90  GKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTF 149

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            I +K+ C       A+ +   + ++ ++G  +     Y T++  F +      A ++ E
Sbjct: 150 TIRMKSFCRTSRPHAARRL---LNNMPSQGC-ESSAVAYCTVIGGFYEENHRVEAHELFE 205

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +ML  G+ P+ + ++ LI+     G V+++  L  ++L+ G  PN    NI +Q   +  
Sbjct: 206 EMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRA 265

Query: 448 QFDRAFRLFRS---------WTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT---NTPN 495
             + A RL             T +     L +++     ++   EH  ++ +        
Sbjct: 266 MLNEAIRLLDGVGRGLTPDVITYNTLICGLCKNF-----KVVEAEHYLRKMVNEGYEPDG 320

Query: 496 FVPNSHYSSF--------------DKRF-SFKPTTTTYNILMKACCT--DYYRVKALMNE 538
           F  NS    +              D  F  F P  +TY  L+   C   D  R   + NE
Sbjct: 321 FTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNE 380

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               GL PN +    L+      G +  AL+
Sbjct: 381 AMEKGLKPNLVLCNTLVKGLSQQGLILQALK 411



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 164/417 (39%), Gaps = 53/417 (12%)

Query: 182 EEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241
           E  R+   EL EE   + +C   PD+              + F   +    +K  +  + 
Sbjct: 194 ENHRVEAHELFEEMLGLGIC---PDI--------------MAFNKLIHTLCRKGHVQESE 236

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI-YEDLRSQNVTLNIYVFNSLMNV 300
           R  +   K   SPN++     I   G C   M + AI   D   + +T ++  +N+L+  
Sbjct: 237 RLLNKVLKRGVSPNLFTVNIFIQ--GFCQRAMLNEAIRLLDGVGRGLTPDVITYNTLICG 294

Query: 301 NAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
              + K  +E    ++K+   G   D  +YN ++   C  G    A +I   ++    KG
Sbjct: 295 LCKNFK-VVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQI---LRDGAFKG 350

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            +  D  TY +++           A+ V  + +  G+ PN +  ++L+   +  GL+ QA
Sbjct: 351 FVP-DESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQA 409

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSK-----TQVALGED 471
           + L  EM + GC P+    N+++   C   C  D    +  +          T   L + 
Sbjct: 410 LKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDG 469

Query: 472 Y------DGNTDRISNMEHKDKQSITNTPNFVPN-----SHYSSFDKRFSFK------PT 514
           Y      D   + +  M +        T N + N       Y      F         P 
Sbjct: 470 YCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPN 529

Query: 515 TTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             TYNIL ++ C      +A  L+ EM+  GL+P+ +++  L+     +G+++GA Q
Sbjct: 530 IITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQ 586



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 99/236 (41%), Gaps = 11/236 (4%)

Query: 201 CVNKPDVNLAIRYACIVPRADIL-FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYIC 259
           CV+  D NL I         D+  F   +  + KK  L +A+   D    H  SP++   
Sbjct: 440 CVSDAD-NLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITY 498

Query: 260 RTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNM 315
            +I++  G+C  G Y      ++ +  +    NI  +N L      A  ++  L + + M
Sbjct: 499 NSILN--GLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEM 556

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           Q  G+  D+ ++  L+K  C  G+   A +++   K ++ +      + TY+ ++  FA 
Sbjct: 557 QNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLF---KRVDEQYKFSHTIATYNIMINAFAG 613

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                MA K+   M   G +P++ T+  +I+     G +          ++ G  P
Sbjct: 614 KLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIP 669


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 156/357 (43%), Gaps = 34/357 (9%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
               +  +G+      A   ++ ++    SP ++    +ID+    G++ ++  +Y+ L 
Sbjct: 33  LVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLV 92

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            +   L+ + +N L+     +  L   +E+++ M+  G   D  +Y  L+ A   AG   
Sbjct: 93  QKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQ 152

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A+  +  +  LE +G L  ++ TY+ ++  F       MAL +  +M   G  P+ +T+
Sbjct: 153 EARSFFDAM--LE-RG-LTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTY 208

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           + L++A  +AG V  A  LF +M   GC P+S   + L+    ++ + + A ++FR    
Sbjct: 209 NILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVD 268

Query: 462 SKTQVALGEDYD---------GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
               V L  +Y+         GN DR+  +  +      +   F P++        FSF 
Sbjct: 269 RGVAVDL-VNYNSLLATLAKAGNMDRVWKLMKE-----MSRKGFHPDA--------FSF- 313

Query: 513 PTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              T  + L KA   D  R   +   M   G  P+ IS+ ILID+    G+   A Q
Sbjct: 314 --NTIMDALGKANKPDAAR--EVFARMVESGCKPDLISYNILIDSYARFGDAAQARQ 366



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 104/208 (50%), Gaps = 6/208 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           SP+ Y   T+++  G  G   ++  ++ ++  + V +++  +NSL+     A ++    +
Sbjct: 237 SPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWK 296

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + K M + G   D  S+N ++ A   A     A+E++  +     +   K D+ +Y+ ++
Sbjct: 297 LMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARM----VESGCKPDLISYNILI 352

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +A       A ++ E+M+ AG  P T T++SLI+  A  G V++A  + EEM  AGC 
Sbjct: 353 DSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCR 412

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRS 458
           P+    N L+    +  +  RA RLF+ 
Sbjct: 413 PDVVTYNRLMDMLGKRGENQRAARLFQQ 440



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 89/195 (45%), Gaps = 6/195 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEV 311
           P+ +   TI+D  G       +R ++  +       ++  +N L++  A   D     ++
Sbjct: 308 PDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQM 367

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M + G + +  +YN L+      G      E +  ++ +E  G  + DV TY+ ++ 
Sbjct: 368 LEEMVEAGFIPETKTYNSLIHWLATDGQV---DEAFAVLEEMETAGC-RPDVVTYNRLMD 423

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +       Q A ++ + M   GV P+T++++  I+  A    +++A+ LF++M   GC  
Sbjct: 424 MLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPV 483

Query: 432 NSQCCNILLQACVEA 446
           +     IL++A   A
Sbjct: 484 DKAMYRILIRAAHRA 498



 Score = 42.0 bits (97), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 75/208 (36%), Gaps = 29/208 (13%)

Query: 387 EDMLSAG--VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           ++M++ G  + PNT+    LI A         A  LF +     C P       L+   V
Sbjct: 19  KEMVAEGRPLRPNTLV--KLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILV 76

Query: 445 EACQFDRAFRLFRSWTLSKTQV------------ALGEDYDGNTDRISNMEHKDKQSITN 492
            + +F+RA  +++       Q+                  D   +    M+ K  +    
Sbjct: 77  NSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEY 136

Query: 493 TPNFVPNS---------HYSSFDKRF--SFKPTTTTYNILMKAC--CTDYYRVKALMNEM 539
           T  F+ N+           S FD        P   TYN+LM A            L  EM
Sbjct: 137 TYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEM 196

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G  P+ +++ IL+DA   +G V  A
Sbjct: 197 KRRGFQPSVVTYNILLDALCSAGRVGAA 224


>gi|224137224|ref|XP_002322504.1| predicted protein [Populus trichocarpa]
 gi|222867134|gb|EEF04265.1| predicted protein [Populus trichocarpa]
          Length = 647

 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 121/238 (50%), Gaps = 6/238 (2%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           D+ F   +  +G+  ++  AL  YD ++      +     T+I +    G++     +YE
Sbjct: 193 DVTFSTMIDSYGRVGNVEKALSLYDRARTEKWRLDTTTFSTLIRIYKDSGNFDCCLNVYE 252

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++++  V  N+ ++N+L++    A       + Y+++   G+    A+Y  LL+A   A 
Sbjct: 253 EMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDIIDSGLSPSYATYAALLRAYGRAR 312

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
                 +IY E+K  E    L L+V  Y+TI+ + AD  +   A+++ EDM ++G++P++
Sbjct: 313 YGEDTIKIYKEMKEKE----LSLNVLLYNTILAMCADLGFVDEAIEIFEDMKNSGISPDS 368

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            T+SS+I   +  G V +A ++  EM +AG +PN      L+Q   +A + D   + F
Sbjct: 369 WTFSSMITMSSCCGKVSEAENMLNEMFEAGFQPNIFVLTSLIQCYGKAQRIDDVVKTF 426



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 82/395 (20%), Positives = 163/395 (41%), Gaps = 63/395 (15%)

Query: 212 RYACIV----------PRADILFCNFVREFGKK---RDLV----------SALRAYDASK 248
           RYA ++          P  D +F N + EFG K    D V          +AL A    +
Sbjct: 56  RYASLIKAAKSLNSCNPNKDDVF-NILGEFGNKLFEHDAVVILNNMSNPDTALLALKFFR 114

Query: 249 KHLS-SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAH 303
           + L  +  + +    + V   C D  K   +++++  + V  +   F+++++     N  
Sbjct: 115 ERLEFNREVVVYNVTMKVLRKCRDLNKVEKLFDEMIERAVKPDNVTFSTIISCARLCNLA 174

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           D    +E ++ M   G+  D  +++ ++ +    GN   A  +Y   +  +     +LD 
Sbjct: 175 DK--AVEWFEKMPSFGLDPDDVTFSTMIDSYGRVGNVEKALSLYDRARTEK----WRLDT 228

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            T+ST+++++ D+  +   L V E+M + GV PN + +++L++A   A    QA   +++
Sbjct: 229 TTFSTLIRIYKDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQD 288

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---------LSKTQVALGEDYDG 474
           ++ +G  P+      LL+A   A   +   ++++            L  T +A+  D   
Sbjct: 289 IIDSGLSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADLGF 348

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA 534
             + I   E      I+      P+S              T +  I M +CC      + 
Sbjct: 349 VDEAIEIFEDMKNSGIS------PDSW-------------TFSSMITMSSCCGKVSEAEN 389

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           ++NEM   G  PN    T LI   G +  ++  ++
Sbjct: 390 MLNEMFEAGFQPNIFVLTSLIQCYGKAQRIDDVVK 424



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   +R +    +    L  Y+  K     PN+ I  T++D  G      +++  Y+D+ 
Sbjct: 231 FSTLIRIYKDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDII 290

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              ++ +   + +L+     A   + T+++YK M++  +  ++  YN +L  C   G   
Sbjct: 291 DSGLSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADLGFVD 350

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A EI+ ++K+      +  D +T+S+++ + +       A  +  +M  AG  PN    
Sbjct: 351 EAIEIFEDMKN----SGISPDSWTFSSMITMSSCCGKVSEAENMLNEMFEAGFQPNIFVL 406

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
           +SLI     A  ++  +  F  + +    P+ + C  LL    +
Sbjct: 407 TSLIQCYGKAQRIDDVVKTFNRLYELLITPDDRFCGCLLNVMTQ 450


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 158/360 (43%), Gaps = 33/360 (9%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295
           L SA R +D+      +PN+Y    ++  +CG  G   ++ ++  D+R      N   +N
Sbjct: 138 LPSARRFFDSMLSDGVAPNVYTYNILVRALCGR-GHRKEALSVLRDMRGAGCDPNAVTYN 196

Query: 296 SLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           +L+     A ++     +   M++ G+  ++ ++N ++   C AG    A++++ E+   
Sbjct: 197 TLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEM--- 253

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
             K  L  D  +Y+T+V  +        AL V  +M   G+ P+ +T++SLI+    AG 
Sbjct: 254 -VKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGN 312

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV------A 467
           +E+A+ L  EM + G + N      L+    +    D A    R     + Q       A
Sbjct: 313 LERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNA 372

Query: 468 LGEDY------DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK--------- 512
           L   Y      D   + +  ME K  +    T + + +++  + D   +F+         
Sbjct: 373 LINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENG 432

Query: 513 --PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             P   TY+ L++  C +     A  L   M ++GL P+ +++T LID     GNVE AL
Sbjct: 433 VLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERAL 492



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 136/286 (47%), Gaps = 19/286 (6%)

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++R   +  ++  +N+L+N       +    E+ + M+  GV  D+ +Y+ +L A C  G
Sbjct: 357 EMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNG 416

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           +T  A ++    + +   GVL  D  TYS++++V  + K    A  + ++M+S G+ P+ 
Sbjct: 417 DTHSAFQLN---QQMLENGVLP-DAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDE 472

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR-LFR 457
           +T++SLI+     G VE+A+ L +EM++AG  P+    ++L+    ++ +   A R LF+
Sbjct: 473 VTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFK 532

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI------TNTPNFVPNSHYSSFDKRFSF 511
            +   +  V     YD       N E K   ++          N     + S  D+ ++ 
Sbjct: 533 LY--HEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNL 590

Query: 512 KPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
               + Y++L+   C +   +KAL    +M   G +PN  S   LI
Sbjct: 591 D--GSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLI 634



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 107/271 (39%), Gaps = 62/271 (22%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           + +M   GV  ++ +YNIL++A C  G+    +E    ++ +   G    +  TY+T+V 
Sbjct: 145 FDSMLSDGVAPNVYTYNILVRALCGRGHR---KEALSVLRDMRGAGC-DPNAVTYNTLVA 200

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F  A     A ++ + M   G+ PN +T++S++N    AG +E A  +F+EM++ G  P
Sbjct: 201 AFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAP 260

Query: 432 NSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           +    N L+   C   C  + A  +F   T                              
Sbjct: 261 DGVSYNTLVGGYCKVGCSHE-ALSVFAEMT------------------------------ 289

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNH 548
                            R    P   T+  L+   C   +  R   L+ EMR  GL  N 
Sbjct: 290 -----------------RKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNE 332

Query: 549 ISWTILIDACGGSGNVEGAL-------QCRF 572
           I++T LID     G ++ AL       QCR 
Sbjct: 333 ITFTALIDGFCKKGFLDDALLAVREMRQCRI 363


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 165/357 (46%), Gaps = 36/357 (10%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           AL+ +   ++    P +     ++DV G  G  + +  A+ E++R+  V  + +  ++++
Sbjct: 199 ALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVI 258

Query: 299 NVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                D  L   +  +++++  G +  + +YN LL+    AGN   A  +   +K +E  
Sbjct: 259 AACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRV---LKEMEDS 315

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  + D  TY+ +   +A A +++ A K  + M S G+ PNT T+++++ A AN G V++
Sbjct: 316 GC-QPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDE 374

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS---------KTQVA 467
           A+ LF+ M + G  PN    N++     +  +F     +    + S          T +A
Sbjct: 375 ALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLA 434

Query: 468 L-----GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH---------YSSFDKRFS--F 511
           +      EDY   T  ++ M+    +   +T N + +++         +  +D+  S  F
Sbjct: 435 VCGKRGMEDY--VTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGF 492

Query: 512 KPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
            P  TTYN L+       D+   ++++++M   G  PN  S+++L+      GN  G
Sbjct: 493 TPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAG 549



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 125/307 (40%), Gaps = 56/307 (18%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN---AHDLKFTLEVYKNMQK 317
           T++      G Y ++  ++ +LR Q V   I  +N +++V           + + + M+ 
Sbjct: 185 TVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRA 244

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            GV  D  + + ++ AC   G   L  +     + L+A+G +   V TY+ +++VF  A 
Sbjct: 245 AGVEPDDFTASTVIAAC---GRDGLLDQAVAFFEDLKARGHVPC-VVTYNALLQVFGKAG 300

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
            +  AL+V ++M  +G  P+ +T++ L    A AG  E+A    + M   G  PN+   N
Sbjct: 301 NYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYN 360

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
            ++ A     + D A  LF                    DR+                  
Sbjct: 361 TVMTAYANVGRVDEALALF--------------------DRM------------------ 382

Query: 498 PNSHYSSFDKRFSFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
                    K+  + P   TYN++  M    + +  +  ++ EM   G +PN ++W  ++
Sbjct: 383 ---------KKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTML 433

Query: 556 DACGGSG 562
             CG  G
Sbjct: 434 AVCGKRG 440



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/398 (20%), Positives = 164/398 (41%), Gaps = 66/398 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   ++ FGK  +   ALR     +     P+      +       G + ++    + 
Sbjct: 287 VTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDT 346

Query: 282 LRSQNVTLNIYVFNSLM--------------------------NVNAHDL---------K 306
           + S+ +  N + +N++M                          NVN ++L         +
Sbjct: 347 MTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSR 406

Query: 307 FT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           FT  LE+ + M + G   +  ++N +L  C   G   +   +   +  +++ GV +L   
Sbjct: 407 FTAMLEMLEEMSRSGCTPNRVTWNTMLAVC---GKRGMEDYVTRVLNGMKSCGV-ELSRD 462

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY+T++  +        A K+ ++M+S+G TP   T+++L+N  +  G    A  +  +M
Sbjct: 463 TYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKM 522

Query: 425 LQAGCEPNSQCCNILLQ--------ACVEACQFD-RAFRLFRSWTLSKTQVALG------ 469
           L+ G +PN Q  ++LLQ        A +E+ + +     +F SW + +T V         
Sbjct: 523 LKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRL 582

Query: 470 EDYDGNTDRISNMEHKDKQSITNT--PNFVPNSHYSS----FD--KRFSFKPTTTTYNIL 521
           E  +     +    +K    I N+    +  N  YS     FD  K+    P   TYN L
Sbjct: 583 EGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSL 642

Query: 522 MK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           M   A   + +  + ++ ++++  + P+ +S+  +I+ 
Sbjct: 643 MDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVING 680



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 110/241 (45%), Gaps = 10/241 (4%)

Query: 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
             I P   IL    +  F K R L    +A+   K     P++ I  +++ +    G Y 
Sbjct: 560 GTIFPSWVILRTLVIANF-KCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYS 618

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+  +++ ++   ++ ++  +NSLM++ A  ++     ++ K ++   V  D+ SYN ++
Sbjct: 619 KATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVI 678

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C  G    AQ I  E   + A G+    V TY T+V  +A  + +  A +V   M+ 
Sbjct: 679 NGFCKQGLIKEAQRILSE---MIADGMAPC-VVTYHTLVGGYASLEMFNEAREVVNYMIH 734

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFD 450
             + P  +T+  ++++   A   ++A     E+  +  + N  Q    +L+A ++  QF 
Sbjct: 735 HNLKPMELTYRRVVDSYCKAKRYDEAREFLSEI--SDTDQNFDQKLQHMLEARIKDAQFG 792

Query: 451 R 451
           R
Sbjct: 793 R 793


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 165/357 (46%), Gaps = 36/357 (10%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           AL+ +   ++    P +     ++DV G  G  + +  A+ E++R+  V  + +  ++++
Sbjct: 199 ALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVI 258

Query: 299 NVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                D  L   +  +++++  G +  + +YN LL+    AGN   A  +   +K +E  
Sbjct: 259 AACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRV---LKEMEDS 315

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  + D  TY+ +   +A A +++ A K  + M S G+ PNT T+++++ A AN G V++
Sbjct: 316 GC-QPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDE 374

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS---------KTQVA 467
           A+ LF+ M + G  PN    N++     +  +F     +    + S          T +A
Sbjct: 375 ALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLA 434

Query: 468 L-----GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH---------YSSFDKRFS--F 511
           +      EDY   T  ++ M+    +   +T N + +++         +  +D+  S  F
Sbjct: 435 VCGKRGMEDY--VTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGF 492

Query: 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
            P  TTYN L+       D+   ++++++M   G  PN  S+++L+      GN  G
Sbjct: 493 TPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAG 549



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 125/307 (40%), Gaps = 56/307 (18%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN---AHDLKFTLEVYKNMQK 317
           T++      G Y ++  ++ +LR Q V   I  +N +++V           + + + M+ 
Sbjct: 185 TVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRA 244

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            GV  D  + + ++ AC   G   L  +     + L+A+G +   V TY+ +++VF  A 
Sbjct: 245 AGVEPDDFTASTVIAAC---GRDGLLDQAVAFFEDLKARGHVPC-VVTYNALLQVFGKAG 300

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
            +  AL+V ++M  +G  P+ +T++ L    A AG  E+A    + M   G  PN+   N
Sbjct: 301 NYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYN 360

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
            ++ A     + D A  LF                    DR+                  
Sbjct: 361 TVMTAYANVGRVDEALALF--------------------DRM------------------ 382

Query: 498 PNSHYSSFDKRFSFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
                    K+  + P   TYN++  M    + +  +  ++ EM   G +PN ++W  ++
Sbjct: 383 ---------KKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTML 433

Query: 556 DACGGSG 562
             CG  G
Sbjct: 434 AVCGKRG 440



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/408 (20%), Positives = 168/408 (41%), Gaps = 66/408 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   ++ FGK  +   ALR     +     P+      +       G + ++    + 
Sbjct: 287 VTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDT 346

Query: 282 LRSQNVTLNIYVFNSLM--------------------------NVNAHDL---------K 306
           + S+ +  N + +N++M                          NVN ++L         +
Sbjct: 347 MTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSR 406

Query: 307 FT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           FT  LE+ + M + G   +  ++N +L  C   G   +   +   +  +++ GV +L   
Sbjct: 407 FTAMLEMLEEMSRSGCTPNRVTWNTMLAVC---GKRGMEDYVTRVLNGMKSCGV-ELSRD 462

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY+T++  +        A K+ ++M+S+G TP   T+++L+N  +  G    A  +  +M
Sbjct: 463 TYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKM 522

Query: 425 LQAGCEPNSQCCNILLQ--------ACVEACQFD-RAFRLFRSWTLSKTQVALG------ 469
           L+ G +PN Q  ++LLQ        A +E+ + +     +F SW + +T V         
Sbjct: 523 LKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRL 582

Query: 470 EDYDGNTDRISNMEHKDKQSITNT--PNFVPNSHYSS----FD--KRFSFKPTTTTYNIL 521
           E  +     +    +K    I N+    +  N  YS     FD  K+    P   TYN L
Sbjct: 583 EGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSL 642

Query: 522 MK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           M   A   + +  + ++ ++++  + P+ +S+  +I+     G ++ A
Sbjct: 643 MDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEA 690



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 110/241 (45%), Gaps = 10/241 (4%)

Query: 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
             I P   IL    +  F K R L    +A+   K     P++ I  +++ +    G Y 
Sbjct: 560 GTIFPSWVILRTLVIANF-KCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYS 618

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+  +++ ++   ++ ++  +NSLM++ A  ++     ++ K ++   V  D+ SYN ++
Sbjct: 619 KATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVI 678

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C  G    AQ I  E   + A G+    V TY T+V  +A  + +  A +V   M+ 
Sbjct: 679 NGFCKQGLIKEAQRILSE---MIADGMAPC-VVTYHTLVGGYASLEMFNEAREVVNYMIH 734

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFD 450
             + P  +T+  ++++   A   ++A     E+  +  + N  Q    +L+A ++  QF 
Sbjct: 735 HNLKPMELTYRRVVDSYCKAKRYDEAREFLSEI--SDTDQNFDQKLQHMLEARIKDAQFG 792

Query: 451 R 451
           R
Sbjct: 793 R 793


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 106/485 (21%), Positives = 203/485 (41%), Gaps = 98/485 (20%)

Query: 112 SLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP--------LELFDGSG-----FKLL 158
           SL+  +S +V   +   ID V+G+LK++  LG+ P        + +   +G     +++L
Sbjct: 222 SLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEIL 281

Query: 159 KNECQRLLDSG---EVEMFVGLMEVLEEFRLPVKELD---EEFRIVQLCVNKPDVNLAIR 212
           K    R+ D G   +V  +  L++ L       ++LD   E F  ++   +KPD    + 
Sbjct: 282 K----RMDDEGCGPDVVTYTVLIDAL----CTARKLDCAKEVFEKMKTGRHKPD---RVT 330

Query: 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
           Y  ++ R           F   RDL S  + +   +K    P++     ++D     G++
Sbjct: 331 YITLLDR-----------FSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNF 379

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
            ++    + +R Q +  N++ +N+L+   +  H L   LE++ NM+ LGV     +Y + 
Sbjct: 380 GEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVF 439

Query: 331 LKACCLAGNTVLAQEIYGEVKHLE-AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           +     +G++V A E + ++K    A  ++  +   YS + K   D +  Q+   +K+  
Sbjct: 440 IDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYS-LAKAGRDREAKQIFYGLKD-- 496

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
              G+ P+++T++ ++   +  G +++A+ L  EM++ GCEP+    N L+    +A + 
Sbjct: 497 --IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRV 554

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
           D A+++F                                                  K  
Sbjct: 555 DEAWKMFMRM-----------------------------------------------KEM 567

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             KPT  TYN L+     +    +A  L   M   G  PN I++  L D    +  V  A
Sbjct: 568 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLA 627

Query: 568 LQCRF 572
           L+  F
Sbjct: 628 LKMLF 632



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 132/300 (44%), Gaps = 23/300 (7%)

Query: 275  SRAIYEDL-RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
            +R ++E   +   V   +  +N L+   + A  ++   +V+  ++  G + D+A+YN LL
Sbjct: 768  ARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLL 827

Query: 332  KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
             A   +G      E+Y E+   E +     +  T++ ++     A     AL +  D++S
Sbjct: 828  DAYGKSGKIDELFELYKEMSTHECEA----NTITHNIVISGLVKAGNVDDALDLYYDLMS 883

Query: 392  -AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
                +P   T+  LI+  + +G + +A  LFE ML  GC PN    NIL+    +A + D
Sbjct: 884  DRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEAD 943

Query: 451  RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
             A  LF+       +  L + Y    D +  +   D+             HY    K   
Sbjct: 944  AACALFKRMVKEGVRPDL-KTYSVLVDCLCMVGRVDE-----------GLHYFKELKESG 991

Query: 511  FKPTTTTYNILMKACCTDYYRVKALM--NEMRTV-GLSPNHISWTILIDACGGSGNVEGA 567
              P    YN+++      +   +AL+  NEM+T  G++P+  ++  LI   G +G VE A
Sbjct: 992  LNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEA 1051



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 7/218 (3%)

Query: 244  YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--N 301
            YD       SP       +ID     G   +++ ++E +       N  ++N L+N    
Sbjct: 879  YDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGK 938

Query: 302  AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
            A +      ++K M K GV  D+ +Y++L+   C+ G        + E+K    +  L  
Sbjct: 939  AGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELK----ESGLNP 994

Query: 362  DVFTYSTIVKVFADAKWWQMALKVKEDM-LSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            DV  Y+ I+     +   + AL +  +M  S G+TP+  T++SLI     AG+VE+A  +
Sbjct: 995  DVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKI 1054

Query: 421  FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            + E+ +AG EPN    N L++    + + + A+ ++++
Sbjct: 1055 YNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQT 1092



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 103/233 (44%), Gaps = 6/233 (2%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
           F+  +GK  D VSAL  ++  K    +PN+  C   +      G   +++ I+  L+   
Sbjct: 439 FIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIG 498

Query: 287 VTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +  +   +N +M   +   ++   +++   M + G   D+   N L+     A     A 
Sbjct: 499 LVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAW 558

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           +++  +K ++    LK  V TY+T++         Q A+++ E M+  G  PNTIT+++L
Sbjct: 559 KMFMRMKEMK----LKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 614

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +       V  A+ +  +M+  GC P+    N ++   V+  Q   A   F 
Sbjct: 615 FDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFH 667



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 92/256 (35%), Gaps = 60/256 (23%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL------------DVFTYSTIVKVF 373
           S  ++    C  G+++L   I    KH    G   L             + TY+ ++   
Sbjct: 736 SERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGL 795

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
            +A   ++A  V   + S G  P+  T++ L++A   +G +++   L++EM    CE N+
Sbjct: 796 LEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANT 855

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
              NI++   V+A   D A  L+               YD  +DR               
Sbjct: 856 ITHNIVISGLVKAGNVDDALDLY---------------YDLMSDR--------------- 885

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISW 551
                            F PT  TY  L+         Y  K L   M   G  PN   +
Sbjct: 886 ----------------DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIY 929

Query: 552 TILIDACGGSGNVEGA 567
            ILI+  G +G  + A
Sbjct: 930 NILINGFGKAGEADAA 945



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 90/183 (49%), Gaps = 7/183 (3%)

Query: 227  FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
             +  FGK  +  +A   +    K    P++     ++D   + G   +    +++L+   
Sbjct: 932  LINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG 991

Query: 287  VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ-KLGVMADMASYNILLKACCLAGNTVLA 343
            +  ++  +N ++N    +H L+  L ++  M+   G+  D+ +YN L+    +AG    A
Sbjct: 992  LNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEA 1051

Query: 344  QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
             +IY E++    +  L+ +VFT++ +++ ++ +   + A  V + M++ G +PNT T+  
Sbjct: 1052 GKIYNEIQ----RAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQ 1107

Query: 404  LIN 406
            L N
Sbjct: 1108 LPN 1110



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 22/257 (8%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+  MQK  +  D  +Y  + K+  + G   L Q  Y   K  E   VL  + ++Y+ ++
Sbjct: 140 VFDLMQKRIIKRDTNTYLTIFKSLSVKGG--LKQAPYALRKMREFGFVL--NAYSYNGLI 195

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            +   +++   A++V   M+  G  P+  T+SSL+        ++  M L +EM   G +
Sbjct: 196 HLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLK 255

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN     I ++    A + + A+ + +           G D    T  I  +    K   
Sbjct: 256 PNVYTFTICIRVLGRAGKINEAYEILKRM----DDEGCGPDVVTYTVLIDALCTARKLDC 311

Query: 491 TNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
                         F+K  +   KP   TY  L+       D   VK   +EM   G  P
Sbjct: 312 AK----------EVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVP 361

Query: 547 NHISWTILIDACGGSGN 563
           + +++TIL+DA   +GN
Sbjct: 362 DVVTFTILVDALCKAGN 378


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/371 (20%), Positives = 149/371 (40%), Gaps = 62/371 (16%)

Query: 210 AIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269
           AIR+A      D +  NF        D    LR           PN+     +ID CG  
Sbjct: 124 AIRFASDDKGIDSVLLNFESRLCGSDDYTFLLRELGNRGDSGLKPNLVTYNAVIDACGKG 183

Query: 270 G-DYMKSRAIYEDLR------SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGV 320
           G D+ ++  I++++        + +  +I+ +N+L++       +    ++   M +  +
Sbjct: 184 GVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHI 243

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
           M ++ +Y+ ++     AG    A  ++ E+K       + LD  +Y+T++ ++A    ++
Sbjct: 244 MPNVVTYSTVIDGYAKAGRLDEALNLFNEMKF----ASIGLDRVSYNTLLSIYAKLGRFE 299

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            AL V ++M S+G+  + +T+++L+      G  E+   +FEEM      PN    + L+
Sbjct: 300 EALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLI 359

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
               +   +  A  +FR +                                         
Sbjct: 360 DVYSKGGLYQEAMEVFREF----------------------------------------- 378

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDAC 558
                 K+   K     Y+ L+ A C +     A+  ++EM   G+ PN +++  +IDA 
Sbjct: 379 ------KKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAF 432

Query: 559 GGSGNVEGALQ 569
           G SG VE A +
Sbjct: 433 GRSGIVEDATE 443



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 138/308 (44%), Gaps = 37/308 (12%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307
           +KH+  PN+    T+ID     G   ++  ++ +++  ++ L+   +N+L+++ A   +F
Sbjct: 240 RKHIM-PNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRF 298

Query: 308 --TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
              L V K M+  G+  D  +YN LL      G     + ++ E+K   A+ +   ++ T
Sbjct: 299 EEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMK---AERIFP-NLLT 354

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           YST++ V++    +Q A++V  +   AG+  + + +S+LI+A    GLVE A+   +EM 
Sbjct: 355 YSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMT 414

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI------ 479
           + G  PN    N ++ A   +   + A           T+  +G+  D    +I      
Sbjct: 415 KEGIRPNVVTYNSIIDAFGRSGIVEDA-----------TESEVGDKEDNQIIKIFGQLAA 463

Query: 480 -----SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRV 532
                +  E++ +Q I          H          KP   T++ ++ AC  C  +   
Sbjct: 464 EKTCHAKKENRGRQEILCILAVFHKMH------ELDIKPNVVTFSAILNACSRCNSFEDA 517

Query: 533 KALMNEMR 540
             L+ E+R
Sbjct: 518 SMLLEELR 525


>gi|363543445|ref|NP_001241732.1| salt-inducible protein [Zea mays]
 gi|195610062|gb|ACG26861.1| salt-inducible protein [Zea mays]
          Length = 716

 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 107/221 (48%), Gaps = 2/221 (0%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F    + FG+  D       +   ++    PN+++   +++  G  G    +R ++E+
Sbjct: 294 VAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLFEE 353

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q V  N     +L  +   A   +  L+++  M++L + AD    N LL  C   G 
Sbjct: 354 MIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADSILCNTLLSMCADVGL 413

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A++++ E+K  E + V K D ++Y+ ++ ++        AL++  +ML  G+ PN +
Sbjct: 414 VAEAEQLFNEMKDPECRDVPKPDKWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIM 473

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           +++ +I     A  ++QA+ + E  L+ G +P+ + C  LL
Sbjct: 474 SYTIVIQCLGKAHRIQQAVEVLESGLEKGLKPDDRLCGCLL 514



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 126/313 (40%), Gaps = 50/313 (15%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV-FNSLMNVNAHDLKFTLEV---YKNMQ 316
           T+I     C  + K+   +E + + +  L   V ++++++V A  L    EV   +   +
Sbjct: 227 TLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQ-LGMKEEVLALFDRAR 285

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
             G   D  ++ +L K    AG+    Q ++ E++ +     +K ++F Y+ +++     
Sbjct: 286 GSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVG----IKPNIFVYNALLEALGKT 341

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
               +A  + E+M+  GV PN  T ++L      A     A+ L+++M +     +S  C
Sbjct: 342 GKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADSILC 401

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           N LL  C +      A +LF                    + + + E +D          
Sbjct: 402 NTLLSMCADVGLVAEAEQLF--------------------NEMKDPECRD---------- 431

Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556
           VP     S+         T   NI      TD      L  EM   G+ PN +S+TI+I 
Sbjct: 432 VPKPDKWSY---------TAMINIYGSNGDTD--SALQLFAEMLKGGIEPNIMSYTIVIQ 480

Query: 557 ACGGSGNVEGALQ 569
             G +  ++ A++
Sbjct: 481 CLGKAHRIQQAVE 493



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 99/263 (37%), Gaps = 52/263 (19%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           DL  TL+ +  +Q+ G  A  +  + LL    L  +   +  +   ++ L A G   LD 
Sbjct: 130 DLAGTLDAF-FLQQQGQGAAPSPSDALLLLNYLHPSWRKSLSLLAWLRALPA-GAFPLDT 187

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
             ++  +K    A+ W  A ++  DML AGV  + IT+S+LI A        +A+  FE 
Sbjct: 188 IFFNVALKSLRAARQWPHAERLALDMLDAGVPLDNITYSTLITAARRCRQFAKAVEWFER 247

Query: 424 MLQA-GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
           M  A G  P+    + +L    +    +    LF                    DR    
Sbjct: 248 MYAADGVLPDEVTYSAVLDVYAQLGMKEEVLALF--------------------DRA--- 284

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMR 540
                                   +   +KP    + +L K      DY  ++ +  EMR
Sbjct: 285 ------------------------RGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMR 320

Query: 541 TVGLSPNHISWTILIDACGGSGN 563
            VG+ PN   +  L++A G +G 
Sbjct: 321 EVGIKPNIFVYNALLEALGKTGK 343


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 141/324 (43%), Gaps = 56/324 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNAHDLKF-TLE 310
           +PN Y   T+I      G   ++  +++++ ++  V     ++N+L+       K  T  
Sbjct: 218 APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL 277

Query: 311 VYKN-MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +Y++ M + GV   +A+YN+L+ A  + G      E Y  V+ +  KG L LDVFTY+ +
Sbjct: 278 LYRDRMVERGVAMTVATYNLLVHALFMDGR---GTEAYELVEEMGGKG-LALDVFTYNIL 333

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + AL++ E+M   GV    +T++SLI A +  G V++   LF+E ++ G 
Sbjct: 334 INGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGI 393

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            P+    N L+ +   +   DRAF +            +GE           ME K    
Sbjct: 394 RPDLVLYNALINSHSTSGNIDRAFEI------------MGE-----------MEKK---- 426

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN 547
                                  P   TYN LM+  C        + L++EM   G+ P+
Sbjct: 427 --------------------RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPD 466

Query: 548 HISWTILIDACGGSGNVEGALQCR 571
            +++  LI      G+V+ AL+ R
Sbjct: 467 LVTYNTLISGYSMKGDVKDALRIR 490



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 95/194 (48%), Gaps = 8/194 (4%)

Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           I + G C  G+  K+  I+E++  + V   +  + SL+        ++ T +++    + 
Sbjct: 332 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRR 391

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  D+  YN L+ +   +GN   A EI GE   +E K +   DV TY+T+++       
Sbjct: 392 GIRPDLVLYNALINSHSTSGNIDRAFEIMGE---MEKKRIAPDDV-TYNTLMRGLCLLGR 447

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A K+ ++M   G+ P+ +T+++LI+  +  G V+ A+ +  EM+  G  P     N 
Sbjct: 448 VDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 507

Query: 439 LLQACVEACQFDRA 452
           L+Q   +  Q D A
Sbjct: 508 LIQGLCKNGQGDDA 521



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 123/296 (41%), Gaps = 61/296 (20%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           +Y  ++S ++ ++    + L++       F L  + +M +L +     ++NI+L+  C A
Sbjct: 110 LYSRMKSLSLPISTASLHPLLSALPSAPAFAL--FADMFRLRLPLCTTTFNIMLRHLCSA 167

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS-AGVTP 396
           G    A E+  ++    A         TY+T++  F      Q AL +  +M    G+ P
Sbjct: 168 GKPARALELLRQMPRPNA--------VTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 219

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPNSQCCNILLQACVEACQFDRAFRL 455
           N  T+ ++I+     G V++A+ +F+EML  G  +P +   N L+    +  + D A  L
Sbjct: 220 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL-L 278

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           +R   + +  VA+                                             T 
Sbjct: 279 YRDRMVER-GVAM---------------------------------------------TV 292

Query: 516 TTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            TYN+L+ A   D    +A  L+ EM   GL+ +  ++ ILI+     GNV+ AL+
Sbjct: 293 ATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALE 348



 Score = 42.0 bits (97), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 34/188 (18%), Positives = 81/188 (43%), Gaps = 6/188 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + + + +    KK  +    + +D + +    P++ +   +I+     G+  ++  I  +
Sbjct: 363 VTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 422

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  +   +N+LM        +    ++   M K G+  D+ +YN L+    + G+
Sbjct: 423 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGD 482

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  I  E+ +   KG     + TY+ +++          A  + ++M+  G+TP+  
Sbjct: 483 VKDALRIRNEMMN---KG-FNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 538

Query: 400 TWSSLINA 407
           T+ SLI  
Sbjct: 539 TYISLIEG 546


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 154/370 (41%), Gaps = 46/370 (12%)

Query: 210 AIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269
           ++R A I P     + N +  +   +DL  A+   +  +    SPN      II   G  
Sbjct: 217 SMRAAGIEPNVHS-YTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRL 275

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   +   ++   S+N   N  ++N++++    A +++    +   M++ G+ A +  Y
Sbjct: 276 GDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLY 335

Query: 328 NILLKAC--CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           N+L+     C A +  L   ++  +K     G L   V +Y  ++ +++       AL++
Sbjct: 336 NMLMDGYVHCRAVDKCL--NVFRRLKARTETG-LSPTVVSYGCLINLYSKLGKMDKALQI 392

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             +M   G+  N  T+S +I+     G    A  +FE+M  AG +P+    NIL+ A  +
Sbjct: 393 SNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCK 452

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
             Q +RA  L                       ++ ME  D      T   + +      
Sbjct: 453 NGQMNRALEL-----------------------LARMESGDCPPTLRTYTIIIDGFMKIG 489

Query: 506 DKRFS-----------FKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWT 552
           D R +           F+P+  TYN++M   A      R  ++++EM   G+ PN  S+T
Sbjct: 490 DLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYT 549

Query: 553 ILID--ACGG 560
            LI+  AC G
Sbjct: 550 TLIEGYACIG 559



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 135/322 (41%), Gaps = 32/322 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SP +     +I++    G   K+  I  ++  Q +  N   ++ +++  V   D      
Sbjct: 367 SPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFS 426

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+++M   G+  D  +YNIL+ A C  G    A E+   ++  +    L+    TY+ I+
Sbjct: 427 VFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLR----TYTIII 482

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F      +MA +   DM  AG  P+  T++ +++  A AG +++A  + +EM+ AG  
Sbjct: 483 DGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVH 542

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD------RISNMEH 484
           PN +    L++          AF+ F        +V L  D            +   M+ 
Sbjct: 543 PNERSYTTLIEGYACIGDMGLAFKYFNRI----KEVGLKPDVIAYASLLKACCKAGRMQS 598

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
               +       VP ++Y               YNIL+       D +    +M +MR  
Sbjct: 599 TLAITAEMAAAGVPMNNY--------------IYNILLDGWAQRGDMWEASDIMQKMRHE 644

Query: 543 GLSPNHISWTILIDACGGSGNV 564
           GL+P+  S+T  I+AC  +G++
Sbjct: 645 GLTPDIHSYTSFINACCKAGDM 666



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/416 (20%), Positives = 163/416 (39%), Gaps = 52/416 (12%)

Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLA---IRYACIVPRADILFCNF 227
           +E  +GL  +L +  +  + +D+   + +    + +  L+   + Y C++        N 
Sbjct: 328 LEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLI--------NL 379

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
             + GK   +  AL+  +  +      N      IID     GD   + +++ED+ +  +
Sbjct: 380 YSKLGK---MDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGI 436

Query: 288 TLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             +   +N LMN       +   LE+   M+       + +Y I++      G+  +A E
Sbjct: 437 KPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFE 496

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
               V+ ++  G  +    TY+ I+   A A     A  + ++M+ AGV PN  ++++LI
Sbjct: 497 T---VRDMKMAG-FRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLI 552

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
              A  G +  A   F  + + G +P+      LL+AC       +A R+  +  ++   
Sbjct: 553 EGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACC------KAGRMQSTLAITAEM 606

Query: 466 VALG---EDY------DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
            A G    +Y      DG   R    E  D           P+ H               
Sbjct: 607 AAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDIH--------------- 651

Query: 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           +Y   + ACC   D  +    + +M+  G+ PN  ++T LI     +   E AL C
Sbjct: 652 SYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALIC 707



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 6/181 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           PN     T+I+     GD   +   +  ++   +  ++  + SL+     A  ++ TL +
Sbjct: 543 PNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAI 602

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M   GV  +   YNILL      G+   A +I  +++H   +G L  D+ +Y++ + 
Sbjct: 603 TAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRH---EG-LTPDIHSYTSFIN 658

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               A     A +  E M   GV PN   +++LI+  A+A   E+A+  ++EM  AG  P
Sbjct: 659 ACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALICYDEMKSAGMIP 718

Query: 432 N 432
           +
Sbjct: 719 D 719



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           F +L+  +  D +  ++ +K ++K         + +L+      G+   A+  +   + +
Sbjct: 166 FRNLVEDHPKDARKVVDAFKRIKK----PKQRDHTLLVNYYGKRGDKHSARAAF---ESM 218

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
            A G+ + +V +Y+ ++  +A A+  + A+   E+M + GV+PN  T+S +I+     G 
Sbjct: 219 RAAGI-EPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGD 277

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
           VE A   F+  L      N    N ++ A  +A   +RA  +  +      +  LG
Sbjct: 278 VEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLG 333


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 135/329 (41%), Gaps = 24/329 (7%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           KK  LVSA    +  +     PN+     +ID     G   ++R + +++  + + LN  
Sbjct: 419 KKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAV 478

Query: 293 VFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +N L++    D K    L ++ +M   G   D+ ++N L+   C        +E  G  
Sbjct: 479 GYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK---FEEALGLY 535

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + +  +GV+  +  TY+T++  F      Q ALK+  DML  G   + IT++ LI A   
Sbjct: 536 QDMLLEGVIA-NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCR 594

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
           AG +E+ + LFE+M+  G  PN+  CNIL+           A    R          L  
Sbjct: 595 AGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDM----IHRGLTP 650

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYNILMKACCTD 528
           D       I+ +    +               + FDK       P   TYN L+   C +
Sbjct: 651 DIVTYNSLINGLCKTGRAQ----------EALNLFDKLQVEGICPDAITYNTLISWHCKE 700

Query: 529 --YYRVKALMNEMRTVGLSPNHISWTILI 555
             +     L++     G  PN ++W IL+
Sbjct: 701 GMFDDAHLLLSRGVDSGFIPNEVTWYILV 729



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 110/266 (41%), Gaps = 30/266 (11%)

Query: 326 SYNILLKACCLAGN--TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           SYN++L    LAGN   V+    Y     + +KG+    V+T+  ++K          A 
Sbjct: 202 SYNVVLDVL-LAGNCPKVVPNVFY----EMLSKGI-SPTVYTFGVVMKALCLVNEVDSAC 255

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
            + +DM   G  PN I + +LI+A +  G V + + L EEML  GC P+    N  +   
Sbjct: 256 ALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGL 315

Query: 444 VEACQFDRAFR-----LFRSWTLSKTQVAL---GEDYDGNTDRISNMEHKDKQSITNTPN 495
            +  +   A +     L R +T +     +   G    G  D    + +K         N
Sbjct: 316 CKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFN 375

Query: 496 FVPNSHYS--SFDK----------RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRT 541
            + N + S    D+               P   TYN L+   C   Y V A  LMNEM+ 
Sbjct: 376 TLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQI 435

Query: 542 VGLSPNHISWTILIDACGGSGNVEGA 567
            G  PN I++TILID     G +E A
Sbjct: 436 KGCEPNVITYTILIDRFCKEGRLEEA 461



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 49/245 (20%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+FTY+T++       +   A ++  +M   G  PN IT++ LI+     G +E+A ++ 
Sbjct: 406 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 465

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--------------------L 461
           +EM   G   N+   N L+ A  +  +   A  +F   +                    +
Sbjct: 466 DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKV 525

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT------- 514
           +K + ALG   D   + +          I NT  +  N+   +F +R + +         
Sbjct: 526 NKFEEALGLYQDMLLEGV----------IANTITY--NTLIHAFLRRGAMQEALKLVNDM 573

Query: 515 --------TTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
                     TYN L+KA C   +  +  AL  +M + GL+PN+IS  ILI+    +GN+
Sbjct: 574 LFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNI 633

Query: 565 EGALQ 569
           + AL+
Sbjct: 634 QHALE 638



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 6/139 (4%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G+  K  A++ED+ S+ +  N    N L+N      +++  LE  ++M   G+  D+ +Y
Sbjct: 596 GNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTY 655

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N L+   C  G    AQE       L+ +G+   D  TY+T++        +  A  +  
Sbjct: 656 NSLINGLCKTGR---AQEALNLFDKLQVEGICP-DAITYNTLISWHCKEGMFDDAHLLLS 711

Query: 388 DMLSAGVTPNTITWSSLIN 406
             + +G  PN +TW  L++
Sbjct: 712 RGVDSGFIPNEVTWYILVS 730


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 6/223 (2%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           +KR +  A+   D       SPN +   TI+      GD  K+   +  LR + + L++Y
Sbjct: 633 EKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVY 692

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            + +L+     +  ++  L V K M    +  +   YNIL+      G+   A ++  ++
Sbjct: 693 TYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQM 752

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K    +G +K D+ TY++ +     A     A K+ E+M ++GV PN  T+++LI+  A 
Sbjct: 753 K----QGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWAR 808

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           A L E+A+  F+EM  AG +P+    + L+ A +       A+
Sbjct: 809 ASLPEKALRCFQEMKLAGLKPDKAVYHCLMTALLSRATVTEAY 851



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 157/366 (42%), Gaps = 46/366 (12%)

Query: 135 VLKKLNELGVAP--------LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL 186
           V ++L E G AP        + L+   G      E  ++++S  ++  +    +L    L
Sbjct: 468 VFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFL 527

Query: 187 PVKELDEEFRIVQLCVN---KPDV---NLAIRYACIVPRADILFCNFVREFGKKR----- 235
            +K+    F I +  V    KPDV   N  IR  C +   D   C  V+E  K+R     
Sbjct: 528 KLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAIC-MVKEMQKERHRPTS 586

Query: 236 --------------DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--Y 279
                         ++  AL  +D  ++    P ++    +I   G+       +AI   
Sbjct: 587 RTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALI--LGLVEKRQMEKAIEIL 644

Query: 280 EDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           +++    V+ N + + ++M+  A   D     E +  ++  G+  D+ +Y  LLKACC +
Sbjct: 645 DEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKS 704

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AKWWQMALKVKEDMLSAGVTP 396
           G     Q      K + A+ + + + F Y+ ++  +A     W+ A  + + M   GV P
Sbjct: 705 GRM---QSALAVTKEMSAQNIPR-NTFVYNILIDGWARRGDVWEAA-DLMQQMKQGGVKP 759

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +  T++S INAC  AG + +A  + EEM  +G +PN +    L+     A   ++A R F
Sbjct: 760 DIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKALRCF 819

Query: 457 RSWTLS 462
           +   L+
Sbjct: 820 QEMKLA 825



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 139/342 (40%), Gaps = 35/342 (10%)

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKN 314
           Y C  +I++    G   K+  + + + S  +  N+  ++ L+N  +   D      ++++
Sbjct: 484 YGC--LINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFED 541

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           + K G+  D+  YN +++A C  G    A  +  E++    +   +    T+  I+  FA
Sbjct: 542 VVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSR----TFMPIIHGFA 597

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            A   + AL V + M  +G  P   T+++LI        +E+A+ + +EM  AG  PN  
Sbjct: 598 RAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEH 657

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG------NTDRI-SNMEHKDK 487
               ++          +AF  F        Q+ +   Y+        + R+ S +    +
Sbjct: 658 TYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDV-YTYEALLKACCKSGRMQSALAVTKE 716

Query: 488 QSITNTP--NFVPNSHYSSFDKRF---------------SFKPTTTTYNILMKACCT--D 528
            S  N P   FV N     + +R                  KP   TY   + ACC   D
Sbjct: 717 MSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGD 776

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
             R   +M EM T G+ PN  ++T LI     +   E AL+C
Sbjct: 777 MLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKALRC 818



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 147/362 (40%), Gaps = 66/362 (18%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327
           GD  ++R  +E +R++ +    +V+ SL++  A   D++  L   + M++ GV   + +Y
Sbjct: 320 GDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEGVEMSLVTY 379

Query: 328 NILLKACCLAGNTVLAQE---------------IYGE-----------------VKHLEA 355
           +I++      GN   A                 IYG                  V+ +E 
Sbjct: 380 SIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVREMEG 439

Query: 356 KGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
           +G+   +D+  Y T++  +      +  L V E +   G  P+ +++  LIN  A  G +
Sbjct: 440 EGIDAPIDI--YHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKI 497

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS--KTQVALGEDY 472
            +A+ + + M  AG + N +  ++L+   ++   +  AF +F        K  V L  + 
Sbjct: 498 SKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNI 557

Query: 473 D------GNTDR----ISNMEHKDKQSITNTPNFVPNSH-----------YSSFD--KRF 509
                  G  DR    +  M+ +  +  + T  F+P  H              FD  +R 
Sbjct: 558 IRAFCGMGTMDRAICMVKEMQKERHRPTSRT--FMPIIHGFARAGEMKRALDVFDMMRRS 615

Query: 510 SFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              PT  T+N L+          KA+  ++EM   G+SPN  ++T ++      G+   A
Sbjct: 616 GCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKA 675

Query: 568 LQ 569
            +
Sbjct: 676 FE 677


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 137/321 (42%), Gaps = 24/321 (7%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P++     +ID     GD   + A+ + + ++ +   I  +NS++       +F    EV
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEV 249

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M +  V  D+ S+NIL+   C  G    A + Y E++H      +  DV ++S ++ 
Sbjct: 250 FRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHR----YVTPDVVSFSCLIG 305

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +F+       A     +M   G+ P+ + ++ +I     AG + +A+ + +EM+  GC P
Sbjct: 306 LFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLP 365

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    N LL          +  RL  +  L       G   D  T   + + H       
Sbjct: 366 DVVTYNTLLNGLC------KQHRLLDAEKLLNEMEERGVTPDLCT--FTTLIH----GYC 413

Query: 492 NTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN 547
              NF   +    FD   R   +P   TYN L+   C   D  +   L ++M    + PN
Sbjct: 414 RQGNF--ENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPN 471

Query: 548 HISWTILIDACGGSGNVEGAL 568
           HI+++ILID+    G VE A 
Sbjct: 472 HITYSILIDSHCEKGQVEDAF 492



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 113/248 (45%), Gaps = 41/248 (16%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           F   +  + ++ +  +AL+ +D   +    P++    ++ID  G+C  GD  K+  +++D
Sbjct: 405 FTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLID--GMCRKGDLAKANELWDD 462

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLE----VYKNMQKLGVMADMASYNILLKACCLA 337
           + ++ +  N   ++ L  +++H  K  +E        M K G + ++ +YN ++K  C +
Sbjct: 463 MHAREILPNHITYSIL--IDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRS 520

Query: 338 GNTVLAQE--------------------IYGEVKHLEAKG-----------VLKLDVFTY 366
           GN    Q+                    I+G +K     G           +++ D  TY
Sbjct: 521 GNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTY 580

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + I+  F++    Q A +V + M  +G+ P+  T+ SLIN    AG  +QA  L +EM+ 
Sbjct: 581 NMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIH 640

Query: 427 AGCEPNSQ 434
            G  P+ +
Sbjct: 641 RGFAPDDK 648



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 140/354 (39%), Gaps = 26/354 (7%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +F   +R + + R    A  A+     H           ++ V    G    ++  Y  +
Sbjct: 89  VFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEAYRLV 148

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            S +  +N Y  N +++     L+F     V   M+K  V  D+ ++N+L+ A   AG+ 
Sbjct: 149 LSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDV 208

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A  +   V  +  +G LK  + TY++++K     + +  A +V   M    V P+  +
Sbjct: 209 DAAIAL---VDSMANRG-LKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRS 264

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++ LI      G V++A+  ++EM      P+    + L+       + D A    R   
Sbjct: 265 FNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMK 324

Query: 461 LSKTQVALGEDYD---GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
                V  G  Y    G   R  +M     +++      V           F   P   T
Sbjct: 325 -GLGLVPDGVIYTMVIGGFCRAGSMS----EALRVRDEMVG----------FGCLPDVVT 369

Query: 518 YNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           YN L+   C  +  + A  L+NEM   G++P+  ++T LI      GN E ALQ
Sbjct: 370 YNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQ 423



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 118/263 (44%), Gaps = 20/263 (7%)

Query: 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS 252
           E FR +  C   PDV             +IL   F R  G+ ++   A++ Y   +    
Sbjct: 248 EVFRTMDQCSVAPDVR----------SFNILIGGFCR-VGEVKE---AVKFYKEMQHRYV 293

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++     +I +    G+   + A   +++   +  +  ++  ++     A  +   L 
Sbjct: 294 TPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALR 353

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V   M   G + D+ +YN LL   C     + A+++  E   +E +GV   D+ T++T++
Sbjct: 354 VRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNE---MEERGVTP-DLCTFTTLI 409

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +     ++ AL++ + +L   + P+ +T++SLI+     G + +A  L+++M      
Sbjct: 410 HGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREIL 469

Query: 431 PNSQCCNILLQACVEACQFDRAF 453
           PN    +IL+ +  E  Q + AF
Sbjct: 470 PNHITYSILIDSHCEKGQVEDAF 492



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/245 (19%), Positives = 110/245 (44%), Gaps = 11/245 (4%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY--M 273
           +VP   +++   +  F +   +  ALR  D        P++    T+++  G+C  +  +
Sbjct: 328 LVPDG-VIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLN--GLCKQHRLL 384

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILL 331
            +  +  ++  + VT ++  F +L++       F   L+++  + +  +  D+ +YN L+
Sbjct: 385 DAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLI 444

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C  G+   A E++ +   + A+ +L   + TYS ++    +    + A    ++M+ 
Sbjct: 445 DGMCRKGDLAKANELWDD---MHAREILPNHI-TYSILIDSHCEKGQVEDAFGFLDEMVK 500

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G  PN  T++S+I     +G V++     ++M Q    P+    N L+   ++      
Sbjct: 501 KGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHG 560

Query: 452 AFRLF 456
           AF +F
Sbjct: 561 AFNVF 565



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 110/230 (47%), Gaps = 10/230 (4%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           K+  L+ A +  +  ++   +P++    T+I   G C  G++  +  +++ L  Q +  +
Sbjct: 379 KQHRLLDAEKLLNEMEERGVTPDLCTFTTLIH--GYCRQGNFENALQLFDTLLRQRLRPD 436

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           +  +NSL++      DL    E++ +M    ++ +  +Y+IL+ + C  G     ++ +G
Sbjct: 437 VVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQV---EDAFG 493

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            +  +  KG L  ++ TY++I+K +  +   +   +  + M    V P+ IT+++LI+  
Sbjct: 494 FLDEMVKKGNLP-NIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGY 552

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
                +  A ++F  M +    P++   N+++    E      A R+F+ 
Sbjct: 553 IKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKG 602



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 129/309 (41%), Gaps = 38/309 (12%)

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKA 333
           R I   L + + T    VF+ L+       K     E ++ +    V    ++ N LL  
Sbjct: 72  REIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAV 131

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
              AG   LAQE Y  V   +++    ++ +T + +V  +     +  A  V  +M    
Sbjct: 132 LSRAGWPHLAQEAYRLVLSSDSE----VNAYTLNIMVHSYCKTLEFDGADTVISEMEKRC 187

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           V P+ +T + LI+A   AG V+ A+ L + M   G +P     N +L+   +  +FD+A 
Sbjct: 188 VFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAK 247

Query: 454 RLFRSWTLSKTQVALGEDYD------GNTDRISNME-----HKDKQSITNTPNFVPNSHY 502
            +FR+      Q ++  D        G   R+  ++     +K+ Q    TP+ V    +
Sbjct: 248 EVFRTM----DQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVS---F 300

Query: 503 SSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
           S     FS +               +     A + EM+ +GL P+ + +T++I     +G
Sbjct: 301 SCLIGLFSRR--------------GEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAG 346

Query: 563 NVEGALQCR 571
           ++  AL+ R
Sbjct: 347 SMSEALRVR 355


>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
           [Vitis vinifera]
 gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 159/356 (44%), Gaps = 26/356 (7%)

Query: 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           +++ F   V  +GK+ D   A R +    K   SP++     +++  G    Y K+ +++
Sbjct: 139 SEMDFLMLVTAYGKQGDFNKAERVFGDMHKKGYSPSVISHTALMEAYGKGKQYNKAESVF 198

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKF-----TLEVYKNMQKLGVMADMASYNILLKAC 334
             + S     +   +  ++ +     KF     T E   + +K  +  D   +++++   
Sbjct: 199 RRMLSSGPEPSALTYQLILKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMY 258

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
             AGN   A++I+G ++    +GV +  V TY++++    +   ++   K  + M  AG+
Sbjct: 259 RKAGNYEKARKIFGLMRE---RGVPQSTV-TYNSLMSFETN---YKEVSKTYDQMQRAGL 311

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+ ++++ LINA   A   E+A+ +FEEML AG  P  +  NILL A   +   D+A  
Sbjct: 312 RPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQART 371

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           +F+S    +       D    T  +S        +  N  +      +    K+  F+P 
Sbjct: 372 VFKSMRRDRCT----PDICSYTTMLS--------AYVNASDMEGAEKFFRRLKQDGFEPN 419

Query: 515 TTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             TY  L+K  A  ++  ++     EM+  G+  N   +T ++DA G + +   A+
Sbjct: 420 VVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMMDAYGKNKDFGSAV 475



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 32/235 (13%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313
           P+  +   +I +    G+Y K+R I+  +R + V  +   +NSLM+    + K   + Y 
Sbjct: 246 PDQKMFHMMIYMYRKAGNYEKARKIFGLMRERGVPQSTVTYNSLMSFET-NYKEVSKTYD 304

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL-------------------- 353
            MQ+ G+  D+ SY +L+ A   A     A  ++ E+                       
Sbjct: 305 QMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG 364

Query: 354 ---EAKGVLK--------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
              +A+ V K         D+ +Y+T++  + +A   + A K    +   G  PN +T+ 
Sbjct: 365 MVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVVTYG 424

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           +LI   A    +E+ M  +EEM   G + N      ++ A  +   F  A   F+
Sbjct: 425 TLIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMMDAYGKNKDFGSAVFWFK 479



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301
           + YD  ++    P++     +I+  G      ++ A++E++    V      +N L++  
Sbjct: 301 KTYDQMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAF 360

Query: 302 AHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           A    +     V+K+M++     D+ SY  +L A   A +   A++ +   + L+  G  
Sbjct: 361 AISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEKFF---RRLKQDG-F 416

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           + +V TY T++K +A     +  ++  E+M   G+  N   ++++++A         A+ 
Sbjct: 417 EPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMMDAYGKNKDFGSAVF 476

Query: 420 LFEEMLQAGCEPNSQCCNILL 440
            F+EM   G  P+ +  NILL
Sbjct: 477 WFKEMGFCGVPPDRKATNILL 497


>gi|212274745|ref|NP_001130291.1| uncharacterized protein LOC100191385 [Zea mays]
 gi|194688762|gb|ACF78465.1| unknown [Zea mays]
 gi|223949231|gb|ACN28699.1| unknown [Zea mays]
 gi|414874010|tpg|DAA52567.1| TPA: salt-inducible protein [Zea mays]
          Length = 716

 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 107/221 (48%), Gaps = 2/221 (0%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F    + FG+  D       +   ++    PN+++   +++  G  G    +R ++E+
Sbjct: 294 VAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLFEE 353

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q V  N     +L  +   A   +  L+++  M++L + AD    N LL  C   G 
Sbjct: 354 MIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADSILCNTLLSMCADVGL 413

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A++++ E+K  E + V K D ++Y+ ++ ++        AL++  +ML  G+ PN +
Sbjct: 414 VAEAEQLFNEMKDPECRDVPKPDKWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIM 473

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           +++ +I     A  ++QA+ + E  L+ G +P+ + C  LL
Sbjct: 474 SYTIVIQCLGKARRIQQAVEVLESGLEKGLKPDDRLCGCLL 514



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 126/313 (40%), Gaps = 50/313 (15%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV-FNSLMNVNAHDLKFTLEV---YKNMQ 316
           T+I     C  + K+   +E + + +  L   V ++++++V A  L    EV   +   +
Sbjct: 227 TLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQ-LGMKEEVLALFDRAR 285

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
             G   D  ++ +L K    AG+    Q ++ E++ +     +K ++F Y+ +++     
Sbjct: 286 GSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVG----IKPNIFVYNALLEALGKT 341

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
               +A  + E+M+  GV PN  T ++L      A     A+ L+++M +     +S  C
Sbjct: 342 GKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADSILC 401

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           N LL  C +      A +LF                    + + + E +D          
Sbjct: 402 NTLLSMCADVGLVAEAEQLF--------------------NEMKDPECRD---------- 431

Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556
           VP     S+         T   NI      TD      L  EM   G+ PN +S+TI+I 
Sbjct: 432 VPKPDKWSY---------TAMINIYGSNGDTD--SALQLFAEMLKGGIEPNIMSYTIVIQ 480

Query: 557 ACGGSGNVEGALQ 569
             G +  ++ A++
Sbjct: 481 CLGKARRIQQAVE 493



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 99/263 (37%), Gaps = 52/263 (19%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           DL  TL+ +  +Q+ G  A  +  + LL    L  +   +  +   ++ L A G   LD 
Sbjct: 130 DLAGTLDAF-FLQQQGQGAAPSPSDALLLLNYLHPSWRKSLSLLAWLRALPA-GAFPLDT 187

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
             ++  +K    A+ W  A ++  DML AGV  + IT+S+LI A        +A+  FE 
Sbjct: 188 IFFNVALKSLRAARQWPHAERLALDMLDAGVPLDNITYSTLITAARRCRQFAKAVEWFER 247

Query: 424 MLQA-GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
           M  A G  P+    + +L    +    +    LF                    DR    
Sbjct: 248 MYAADGVLPDEVTYSAVLDVYAQLGMKEEVLALF--------------------DRA--- 284

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMR 540
                                   +   +KP    + +L K      DY  ++ +  EMR
Sbjct: 285 ------------------------RGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMR 320

Query: 541 TVGLSPNHISWTILIDACGGSGN 563
            VG+ PN   +  L++A G +G 
Sbjct: 321 EVGIKPNIFVYNALLEALGKTGK 343


>gi|356529805|ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Glycine max]
          Length = 1092

 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 126/320 (39%), Gaps = 57/320 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTL 309
           PN++    +ID C   G   K+   Y  +RS+NV  +  VFN+L+       A D  F +
Sbjct: 528 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGALDRAFDV 587

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
                 +   +  D  +   LLKAC  AG    A+E+Y  V+    KG  ++    Y+  
Sbjct: 588 LAEMTAETQPIDPDHVTIGALLKACTKAGQVERAKEVYKMVQKYNIKGCPEV----YTIA 643

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +   +    W+ A  V  DM   G+ P+ I  S+LI+   +A  ++ A  + +E  + G 
Sbjct: 644 INSCSQTGDWEFAHTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEARKGGI 703

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
                  + L+ AC  A  + +A  L+                                 
Sbjct: 704 LIGIMSYSSLMGACSNARNWQKALELYE-------------------------------- 731

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPN 547
                          + K      T +T N L+ A C      KAL  + EM+ +GL PN
Sbjct: 732 ---------------YLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFEMKGLGLRPN 776

Query: 548 HISWTILIDACGGSGNVEGA 567
            I+++ILI A     ++E A
Sbjct: 777 SITFSILIVASEKKDDMEAA 796



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P +Y     I+ C   GD+  +  +Y D+  + +  +    ++L++V  H  K     +V
Sbjct: 637 PEVYTI--AINSCSQTGDWEFAHTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDV 694

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            +  +K G++  + SY+ L+ AC  A N   A E+Y  +K L+    L + V T + ++ 
Sbjct: 695 LQEARKGGILIGIMSYSSLMGACSNARNWQKALELYEYLKSLK----LTITVSTVNALLT 750

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
              D   +Q AL+V  +M   G+ PN+IT+S LI A      +E A  L     + G  P
Sbjct: 751 ALCDGDQFQKALEVLFEMKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSLAKKDGVVP 810

Query: 432 NSQCCNILLQACVEACQFDRA 452
           N   C  ++  C    +F++A
Sbjct: 811 NLIMCRCIIGMCQR--RFEKA 829



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 16/247 (6%)

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           ++++N+L+  C  + ++    E   +V  L     L+ D   Y+T++   A +    +  
Sbjct: 460 LSTFNMLMSVCASSQDS----EGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMF 515

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           +V   M+++GV PN  T+ +LI+ CA AG V +A   +  M     +P+    N L+ AC
Sbjct: 516 EVFHKMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAAC 575

Query: 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
            ++   DRAF +    T ++TQ       D +   I  +     ++ T            
Sbjct: 576 AQSGALDRAFDVLAEMT-AETQ-----PIDPDHVTIGAL----LKACTKAGQVERAKEVY 625

Query: 504 SFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561
              ++++ K     Y I + +C    D+     + N+M   G+ P+ I  + LID  G +
Sbjct: 626 KMVQKYNIKGCPEVYTIAINSCSQTGDWEFAHTVYNDMTQKGILPDEIFLSALIDVAGHA 685

Query: 562 GNVEGAL 568
             ++ A 
Sbjct: 686 KKLDAAF 692


>gi|219884651|gb|ACL52700.1| unknown [Zea mays]
          Length = 716

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 107/221 (48%), Gaps = 2/221 (0%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F    + FG+  D       +   ++    PN+++   +++  G  G    +R ++E+
Sbjct: 294 VAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLFEE 353

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q V  N     +L  +   A   +  L+++  M++L + AD    N LL  C   G 
Sbjct: 354 MIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADSILCNTLLSMCADVGL 413

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A++++ E+K  E + V K D ++Y+ ++ ++        AL++  +ML  G+ PN +
Sbjct: 414 VAEAEQLFNEMKGPECRDVPKPDKWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIM 473

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           +++ +I     A  ++QA+ + E  L+ G +P+ + C  LL
Sbjct: 474 SYTIVIQCLGKARRIQQAVEVLESGLEKGLKPDDRLCGCLL 514



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 125/313 (39%), Gaps = 50/313 (15%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV-FNSLMNVNAHDLKFTLEV---YKNMQ 316
           T+I     C  + K+   +E + + +  L   V ++++++V A  L    EV   +   +
Sbjct: 227 TLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQ-LGMKEEVLALFDRAR 285

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
             G   D  ++ +L K    AG+    Q ++ E++ +     +K ++F Y+ +++     
Sbjct: 286 GSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVG----IKPNIFVYNALLEALGKT 341

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
               +A  + E+M+  GV PN  T ++L      A     A+ L+++M +     +S  C
Sbjct: 342 GKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADSILC 401

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           N LL  C +      A +LF                    + +   E +D          
Sbjct: 402 NTLLSMCADVGLVAEAEQLF--------------------NEMKGPECRD---------- 431

Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556
           VP     S+         T   NI      TD      L  EM   G+ PN +S+TI+I 
Sbjct: 432 VPKPDKWSY---------TAMINIYGSNGDTD--SALQLFAEMLKGGIEPNIMSYTIVIQ 480

Query: 557 ACGGSGNVEGALQ 569
             G +  ++ A++
Sbjct: 481 CLGKARRIQQAVE 493



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 7/162 (4%)

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKL-GVMADMASYNILLKACCLA 337
           D+    V L+   +++L+       +F   +E ++ M    GV+ D  +Y+ +L      
Sbjct: 212 DMLDAGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQL 271

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G   + +E+          G  K D   ++ + K+F +A  +     V ++M   G+ PN
Sbjct: 272 G---MKEEVLALFDRARGSG-WKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPN 327

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
              +++L+ A    G    A +LFEEM+  G EPN++    L
Sbjct: 328 IFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTAL 369



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 99/263 (37%), Gaps = 52/263 (19%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           DL  TL+ +  +Q+ G  A  +  + LL    L  +   +  +   ++ L A G   LD 
Sbjct: 130 DLAGTLDAF-FLQQQGQGAAPSPSDALLLLNYLHPSWRKSLSLLAWLRALPA-GAFPLDT 187

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
             ++  +K    A+ W  A ++  DML AGV  + IT+S+LI A        +A+  FE 
Sbjct: 188 IFFNVALKSLRAARQWPHAERLALDMLDAGVPLDNITYSTLITAARRCRQFAKAVEWFER 247

Query: 424 MLQA-GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
           M  A G  P+    + +L    +    +    LF                    DR    
Sbjct: 248 MYAADGVLPDEVTYSAVLDVYAQLGMKEEVLALF--------------------DRA--- 284

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMR 540
                                   +   +KP    + +L K      DY  ++ +  EMR
Sbjct: 285 ------------------------RGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMR 320

Query: 541 TVGLSPNHISWTILIDACGGSGN 563
            VG+ PN   +  L++A G +G 
Sbjct: 321 EVGIKPNIFVYNALLEALGKTGK 343


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 146/339 (43%), Gaps = 30/339 (8%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           AL   D   +    P +    T+++  G+C  G    +  + + +       N   +  +
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVN--GLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPV 234

Query: 298 MNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           +NV   +      +E+ + M++  +  D   Y+I++   C  G+   A  ++ E   +E 
Sbjct: 235 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE---MEI 291

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           KG  K D+ TY+T++  F +A  W    K+  DM+   ++PN +T+S LI++    G + 
Sbjct: 292 KG-FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLR 350

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
           +A  L +EM+Q G  PN+   N L+        F +  RL  +  +    ++ G D D  
Sbjct: 351 EADQLLKEMMQRGIAPNTITYNSLIDG------FCKENRLEEAIQMVDLMISKGCDPDIM 404

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK---PTTTTYNILMKACCTD--YY 530
           T  I    +     I +              +  S +     T TYN L++  C      
Sbjct: 405 TFNILINGYCKANRIDDGLELF---------REMSLRGVIANTVTYNTLVQGFCQSGKLE 455

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             K L  EM +  + P+ +S+ IL+D    +G +E AL+
Sbjct: 456 VAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALE 494



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 101/456 (22%), Positives = 198/456 (43%), Gaps = 50/456 (10%)

Query: 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL 186
           G++   V ++ ++ E G  P E+  G    ++   C+    SG+  + + L+  +EE  +
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVM---CK----SGQTALAMELLRKMEERNI 259

Query: 187 PVKELDEEFRIVQLCVNKP---DVNLAIRYACIVPRADIL--------FCNFVREFGKKR 235
            +  +     I  LC +       NL         +ADI+        FCN     G+  
Sbjct: 260 KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNA----GRWD 315

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295
           D    LR  D  K+ +S PN+     +ID     G   ++  + +++  + +  N   +N
Sbjct: 316 DGAKLLR--DMIKRKIS-PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYN 372

Query: 296 SLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           SL++     + L+  +++   M   G   D+ ++NIL+   C A       E++   + +
Sbjct: 373 SLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF---REM 429

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
             +GV+  +  TY+T+V+ F  +   ++A K+ ++M+S  V P+ +++  L++   + G 
Sbjct: 430 SLRGVIA-NTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGE 488

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
           +E+A+ +F ++ ++  E +     I++     A + D A+ LF S  L   ++    D  
Sbjct: 489 LEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKL----DAR 544

Query: 474 GNTDRISNMEHKDKQSITNT--PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR 531
                IS +  KD  S  +          H           P   TYNIL++A   D   
Sbjct: 545 AYNIMISELCRKDSLSKADILFRKMTEEGH----------APDELTYNILIRAHLGDDDA 594

Query: 532 VKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
             A  L+ EM++ G  P  +S   ++     SG ++
Sbjct: 595 TTAAELIEEMKSSGF-PADVSTVKMVINMLSSGELD 629



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/297 (20%), Positives = 114/297 (38%), Gaps = 20/297 (6%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A+ + + S+ +  +IY  + ++N       L +       + KLG   D   +N LL   
Sbjct: 109 ALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGL 168

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           CL      A E+   +  +  K  L     T +T+V           A+ + + M+  G 
Sbjct: 169 CLECRVSEALELVDRMVEMGHKPTL----ITLNTLVNGLCLNGKVSDAVVLIDRMVETGF 224

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PN +T+  ++N    +G    AM L  +M +   + ++   +I++    +    D AF 
Sbjct: 225 QPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFN 284

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           LF    +   +  +   Y+       N    D  +                 KR    P 
Sbjct: 285 LFNEMEIKGFKADIIT-YNTLIGGFCNAGRWDDGA----------KLLRDMIKR-KISPN 332

Query: 515 TTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             T+++L+ +   +        L+ EM   G++PN I++  LID       +E A+Q
Sbjct: 333 VVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQ 389


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/354 (20%), Positives = 136/354 (38%), Gaps = 87/354 (24%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313
           P +    T++    + G    +R I  +++S+    ++  +N +++   ++ + + EV +
Sbjct: 259 PTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRAS-EVLR 317

Query: 314 NMQKLGVMADMASYNILLKACCLAG----------------------------------N 339
            M+ +G++ D  SYNIL++ C   G                                  N
Sbjct: 318 EMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMEN 377

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            + A EI   ++ +  KG++ LD  TY+ ++  +      + A  + ++M++ G+ P   
Sbjct: 378 KIEAAEIL--IREIREKGIV-LDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQF 434

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++SLI          +A  LFE+++  G +P+    N L+         DRAF L +  
Sbjct: 435 TYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEM 494

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                                           R +  P   TYN
Sbjct: 495 -----------------------------------------------DRMNIDPDDVTYN 507

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            LM+  C +  +   + LM EM+  G+ P+HIS+  LI      G+ + A   R
Sbjct: 508 CLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVR 561



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 148/367 (40%), Gaps = 49/367 (13%)

Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           ++ ILF   VR + + R +  A+  +   K+    P    C  I+ +         +   
Sbjct: 154 KSTILFDFMVRFYCQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVF 213

Query: 279 YEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           Y D+    +  N+Y FN ++NV      LK        M+  G+   + +YN L++   L
Sbjct: 214 YADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSL 273

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G    A+ I  E+K   +KG  + D+ TY+ I+    +      A +V  +M   G+ P
Sbjct: 274 RGRIEGARMIISEMK---SKG-FQPDLQTYNPILSWMCNEGR---ASEVLREMKGIGLVP 326

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           ++++++ LI  C+N G +E A    +EM++ G  P     N L+       + + A  L 
Sbjct: 327 DSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILI 386

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN--TPNFVPNSHYSSFDKRFSF--- 511
           R                         E ++K  + +  T N V N +    D + +F   
Sbjct: 387 R-------------------------EIREKGIVLDSVTYNIVINGYCQHGDAKKAFALH 421

Query: 512 --------KPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGS 561
                   KPT  TY  L+   C      +A  L  ++   G+ P+ +    L+D    +
Sbjct: 422 DEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAT 481

Query: 562 GNVEGAL 568
           GN++ A 
Sbjct: 482 GNMDRAF 488



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 11/167 (6%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           ++E +  + +  ++ + N+LM+        D  F+L   K M ++ +  D  +YN L++ 
Sbjct: 455 LFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSL--LKEMDRMNIDPDDVTYNCLMRG 512

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C  G    A+E+ GE+K    +G+ K D  +Y+T++  ++     + A  V+++MLS G
Sbjct: 513 LCGEGKFEEARELMGEMKR---RGI-KPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLG 568

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNIL 439
             P  +T+++L+   +     E A  L  EM   G  PN S  C+++
Sbjct: 569 FNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSVI 615



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P++ +  T++D     G+  ++ ++ +++   N+  +   +N LM     + KF    E+
Sbjct: 466 PDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEAREL 525

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M++ G+  D  SYN L+      G+T  A  +  E+  L     L     TY+ ++K
Sbjct: 526 MGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTL----LTYNALLK 581

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
             +  +  ++A ++  +M S G+ PN  ++ S+I A + +
Sbjct: 582 GLSKNQDGELAEELLREMKSEGIVPNDSSFCSVIEAMSKS 621


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 154/357 (43%), Gaps = 60/357 (16%)

Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLS---SPNMYICRTIIDVCGICGDYMKS 275
           + DIL   ++      R    A RA +  ++ LS   S N +    +ID     G  +K 
Sbjct: 41  QGDILLYGYL--INALRKTRQARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKG 98

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
             ++ ++ +  +  N+ V++SL+N       L+  + ++  M   G+ A++ +YN L+ A
Sbjct: 99  LKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHA 158

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C  G   L +E       +  +G+L  DV T++T++   +     Q A K+ E M+  G
Sbjct: 159 SCRFG---LWKEATRTFSQMVGEGILP-DVVTFTTLIDHLSKKGKVQEAYKIFELMIKQG 214

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             PN +T++SL+N       ++ A+ LFE M++ G + +    N L+     + + + A 
Sbjct: 215 EAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAM 274

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
            LFR                        M++++                          P
Sbjct: 275 TLFRK-----------------------MQYEE------------------------LTP 287

Query: 514 TTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           + TTY IL+KA   +      K L N M+  G SP+  ++T+L+D    +G +E A+
Sbjct: 288 SITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAI 344



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 126/277 (45%), Gaps = 38/277 (13%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           I+P   + F   +    KK  +  A + ++   K   +PN+    ++++  G+C  +   
Sbjct: 180 ILPDV-VTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLN--GLCLHHQMD 236

Query: 276 RAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
            A+  +E +  + + +++  +N+L+N    +   +  + +++ MQ   +   + +Y ILL
Sbjct: 237 HAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILL 296

Query: 332 KACCLAGNTVLAQEIY------GEVKHLEAKGVL------------KLDVF--------- 364
           KA    G    A+E++      G+   L+   VL             +DVF         
Sbjct: 297 KALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYK 356

Query: 365 ----TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
                YS ++     A+ W+ A+++ +++ + G+ PN +T++ +IN     G + +A  L
Sbjct: 357 PSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERL 416

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           F +M ++GCE +    N +++  ++  Q  +A    +
Sbjct: 417 FVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLK 453



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/352 (19%), Positives = 133/352 (37%), Gaps = 94/352 (26%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL-- 309
           PN+ +  ++I+  G+C  G   ++  +++++ SQ +  N+  +NSL++ +    +F L  
Sbjct: 112 PNVIVYSSLIN--GLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASC---RFGLWK 166

Query: 310 ---EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG-EVKHLEAKGV------- 358
                +  M   G++ D+ ++  L+      G    A +I+   +K  EA  +       
Sbjct: 167 EATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLL 226

Query: 359 -----------------------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
                                  +K+DV +Y+T++  +  +   + A+ +   M    +T
Sbjct: 227 NGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELT 286

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFR 454
           P+  T++ L+ A    G +  A  LF  M   G  P+     +LL   C   C  + A  
Sbjct: 287 PSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGC-IEEAID 345

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           +FRS                                                K   +KP+
Sbjct: 346 VFRSL-----------------------------------------------KSIKYKPS 358

Query: 515 TTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
              Y+IL+        +     + +E+ TVGL PN +++ I+I+     G +
Sbjct: 359 IRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKL 410



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           K G   ++ + + L+K  C  G  + A E++ ++     +G    D+  Y  ++      
Sbjct: 2   KSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQG----DILLYGYLINALRKT 57

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
           +  + A+++   MLS   + N  T+  +I++    GL  + + +F EM+  G  PN    
Sbjct: 58  RQARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVY 117

Query: 437 NILLQACVEACQFDRAFRLF 456
           + L+       +   A  LF
Sbjct: 118 SSLINGLCRVGKLREAVNLF 137


>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
 gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
          Length = 647

 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 156/351 (44%), Gaps = 34/351 (9%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A RA+D+         ++    +I      G   ++  + E ++   +      +N++++
Sbjct: 7   ARRAFDSGIADRYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVID 66

Query: 300 V---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                  DL+FTL  ++ M + G+  D  ++N LL AC  AG+   A+ ++ E+ HL + 
Sbjct: 67  ACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSG 126

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
                D++TY+T V         ++A +V  DM +  + PN +T+S+L++  +     ++
Sbjct: 127 ----RDIYTYNTFVDAICKCGNMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDE 182

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL--------FRSWTLSKTQVAL 468
           A+ L E+M   G + +  C N LL   V+  ++D    +            T++   +  
Sbjct: 183 ALKLREKMKSLGIQLDRVCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLIN 242

Query: 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNS-----------HYSSFDKRFSFKPTTTT 517
           G    G  D ++ +  +D ++    P+ +  S           H  +F+    FK +   
Sbjct: 243 GYGKQGRLDMVAFLV-QDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLK 301

Query: 518 YNILMKACCTDYYR-------VKALMNEMRTVGLSPNHISWTILIDACGGS 561
            ++++ +   D            +L++EM  +G+ PN +++  +IDA G S
Sbjct: 302 ADVVLFSSFIDTLAKNGLVECALSLLDEMIKMGIKPNVVTYNTIIDAFGKS 352



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/217 (19%), Positives = 102/217 (47%), Gaps = 12/217 (5%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           + +  + + + +  +GK+  L          +    +P++    T+ID+    G +  + 
Sbjct: 230 IEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAF 289

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            +Y D +   +  ++ +F+S ++  A +  ++  L +   M K+G+  ++ +YN ++ A 
Sbjct: 290 NVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEMIKMGIKPNVVTYNTIIDA- 348

Query: 335 CLAGNTVLAQEIYGEVKHLEAKG---VLKLDVFTY----STIVKVFADAKWWQMALKVKE 387
               + +L +E  G +  +   G   V   +  T     +T V++    + +   L++ +
Sbjct: 349 -FGKSKILTEEDPGNMGIVGVYGGQIVRATNPVTRGGRSATDVRMRRSQELF-FILELFQ 406

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            M+  GV PN +T+S+++NAC+     E A  L E++
Sbjct: 407 KMVQQGVRPNVVTFSAILNACSRCNNFEDAALLLEQL 443


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 142/335 (42%), Gaps = 63/335 (18%)

Query: 245 DASKKHLS----SPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLM 298
           DA+++ ++     P+ Y   T+I   G+CG    S A  + ED+  +    ++  +  L+
Sbjct: 151 DAARRLVADMPVEPDAYTYNTLIR--GLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILL 208

Query: 299 NVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                    K  +++   M   G   D+ +YN++L   C  G    A E    +K+L + 
Sbjct: 209 EATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEF---LKNLPSY 265

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  + +  +Y+ ++K    A+ W+ A K+ E+M   G  PN +T++ LI+     GLVE 
Sbjct: 266 GC-EPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEP 324

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476
           AM + E+M Q GC PNS   N LL A      F +  ++ ++    +  V+ G       
Sbjct: 325 AMEVLEQMPQYGCTPNSLSYNPLLHA------FCKQKKIHKAMEFVELMVSRG------- 371

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA-- 534
                                               P   +YN L+ A C +     A  
Sbjct: 372 ----------------------------------CYPDIVSYNTLLTALCRNGEVDVAIE 397

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L+++++  G SP  IS+  +ID    +G  + AL+
Sbjct: 398 LLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALE 432



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 114/277 (41%), Gaps = 42/277 (15%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+  YN ++   C AG    A+ +  ++        ++ D +TY+T+++          A
Sbjct: 133 DVMVYNAMVAGYCGAGQLDAARRLVADMP-------VEPDAYTYNTLIRGLCGRGRTSNA 185

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           L V EDM   G  P+ +T++ L+ A       +QAM L +EM   GC P+    N++L  
Sbjct: 186 LAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNG 245

Query: 443 CVEACQFDRAFRLFRSW--------TLSKTQVALG----EDYDGNTDRISNMEHKDKQSI 490
             +  + + A    ++         T+S   V  G    E ++     +  M HK     
Sbjct: 246 ICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKG---- 301

Query: 491 TNTPNFVPNSHYSSFDKR----------------FSFKPTTTTYNILMKACCTDYYRVKA 534
              PN V  +   SF  R                +   P + +YN L+ A C      KA
Sbjct: 302 -CPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKA 360

Query: 535 L--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +  +  M + G  P+ +S+  L+ A   +G V+ A++
Sbjct: 361 MEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIE 397



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 6/181 (3%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACC 335
           + E +     T N   +N L++      K    +E  + M   G   D+ SYN LL A C
Sbjct: 328 VLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALC 387

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G   +A E+  ++K      VL     +Y+T++     A   + AL++ ++M S G+ 
Sbjct: 388 RNGEVDVAIELLHQLKDKGCSPVL----ISYNTVIDGLTKAGKTKEALELLDEMTSKGLQ 443

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ IT+S++ +       +E+A+  F ++   G  P +   N +L    +  +   A  L
Sbjct: 444 PDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDL 503

Query: 456 F 456
           F
Sbjct: 504 F 504



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 11/186 (5%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           + M SR  Y D+ S N  L     N  ++V        +E+   ++  G    + SYN +
Sbjct: 365 ELMVSRGCYPDIVSYNTLLTALCRNGEVDV-------AIELLHQLKDKGCSPVLISYNTV 417

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +     AG T  A E+  E   + +KG L+ D+ TYSTI          + A++    + 
Sbjct: 418 IDGLTKAGKTKEALELLDE---MTSKG-LQPDIITYSTIASGLCREDRIEEAVRTFCKVQ 473

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
             G+ P    +++++           A+ LF  M+ +GC PN     IL++         
Sbjct: 474 DMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVK 533

Query: 451 RAFRLF 456
            A  LF
Sbjct: 534 EARELF 539


>gi|384248722|gb|EIE22205.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 506

 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 4/204 (1%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314
           N+ +  T+++VC   G   ++ AI+  + +  V L++  +N  M   + +  ++   +  
Sbjct: 165 NVVLYTTLMNVCRRGGQPERAMAIFRTMETDGVQLDVVAYNQAMASCSWEQAWS--CFNV 222

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKLDVFTYSTIVKV 372
           M++ GV  +  SYN LL AC   G    A E +  ++   AK  G ++    TY+T++  
Sbjct: 223 MRRAGVQPNTRSYNALLAACERDGEADRALEAFARMEREAAKTYGYVEPSAVTYNTLISA 282

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
              A  +  AL+V   M + G TP++ T  SL++A   AG    A+  F+E   AG  PN
Sbjct: 283 CGKAGKYAEALEVAAVMRTRGHTPDSFTICSLVSAAGGAGEWRSALATFQEFCAAGGRPN 342

Query: 433 SQCCNILLQACVEACQFDRAFRLF 456
           +   N L++A  +  Q  RA  +F
Sbjct: 343 AAAYNALIRALGQGGQPARALAVF 366



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 127/296 (42%), Gaps = 36/296 (12%)

Query: 287 VTLNIYVFNSLMNVNAHDLKFT---LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            T + +++  L++++A         LE +  M    +  D+ ++N  + A   AG+    
Sbjct: 55  TTADRFLYTRLLSMSARQPNGAVKALEFFDRMCAARIRPDVVAFNAAIGAAGKAGDWERV 114

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVF-ADAKWWQMALKVKEDMLSAGVTPNTITWS 402
             +Y +++     GV K DV+T+S +     A    W+ ALK  + M S+G+  N + ++
Sbjct: 115 LRLYADMQQ---SGV-KPDVWTFSALTAACQACGNRWKDALKFLDQMESSGIKGNVVLYT 170

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF------ 456
           +L+N C   G  E+AM +F  M   G + +     +     + +C +++A+  F      
Sbjct: 171 TLMNVCRRGGQPERAMAIFRTMETDGVQLDV----VAYNQAMASCSWEQAWSCFNVMRRA 226

Query: 457 --RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
             +  T S   +    + DG  DR      + ++    T  +V              +P+
Sbjct: 227 GVQPNTRSYNALLAACERDGEADRALEAFARMEREAAKTYGYV--------------EPS 272

Query: 515 TTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             TYN L+ AC     Y     +   MRT G +P+  +   L+ A GG+G    AL
Sbjct: 273 AVTYNTLISACGKAGKYAEALEVAAVMRTRGHTPDSFTICSLVSAAGGAGEWRSAL 328



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 17/194 (8%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLM---NVNAHDLKFTLEVYKNMQKLGVMADMASY 327
           D+ +   +Y D++   V  +++ F++L        +  K  L+    M+  G+  ++  Y
Sbjct: 110 DWERVLRLYADMQQSGVKPDVWTFSALTAACQACGNRWKDALKFLDQMESSGIKGNVVLY 169

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             L+  C   G    A  I+   + +E  GV +LDV  Y+  +   +    W+ A     
Sbjct: 170 TTLMNVCRRGGQPERAMAIF---RTMETDGV-QLDVVAYNQAMASCS----WEQAWSCFN 221

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC------EPNSQCCNILLQ 441
            M  AGV PNT ++++L+ AC   G  ++A+  F  M +         EP++   N L+ 
Sbjct: 222 VMRRAGVQPNTRSYNALLAACERDGEADRALEAFARMEREAAKTYGYVEPSAVTYNTLIS 281

Query: 442 ACVEACQFDRAFRL 455
           AC +A ++  A  +
Sbjct: 282 ACGKAGKYAEALEV 295



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 82/182 (45%), Gaps = 7/182 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P+     T+I  CG  G Y ++  +   +R++  T + +   SL++    A + +  L  
Sbjct: 271 PSAVTYNTLISACGKAGKYAEALEVAAVMRTRGHTPDSFTICSLVSAAGGAGEWRSALAT 330

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH-----LEAKGVLKLDVFTY 366
           ++     G   + A+YN L++A    G    A  ++  ++               +  ++
Sbjct: 331 FQEFCAAGGRPNAAAYNALIRALGQGGQPARALAVFNGMRSELPPAPGRAPAPPPNARSW 390

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +  +        W+  L++ +DM  +G+ P+  T  S+I+AC  AG  E+A  +F+ M Q
Sbjct: 391 AAAIGACRACGRWRDVLRLYQDMCDSGLAPDGHTLQSVISACERAGAWEEADAVFQRMEQ 450

Query: 427 AG 428
           AG
Sbjct: 451 AG 452


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 135/329 (41%), Gaps = 24/329 (7%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           KK  LVSA    +  +     PN+     +ID     G   ++R + +++  + + LN  
Sbjct: 26  KKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAV 85

Query: 293 VFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +N L++    D K    L ++ +M   G   D+ ++N L+   C        +E  G  
Sbjct: 86  GYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF---EEALGLY 142

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + +  +GV+  +  TY+T++  F      Q ALK+  DML  G   + IT++ LI A   
Sbjct: 143 QDMLLEGVIA-NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCR 201

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
           AG +E+ + LFE+M+  G  PN+  CNIL+           A    R          L  
Sbjct: 202 AGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDM----IHRGLTP 257

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYNILMKACCTD 528
           D       I+ +    +               + FDK       P   TYN L+   C +
Sbjct: 258 DIVTYNSLINGLCKTGRAQ----------EALNLFDKLQVEGICPDAITYNTLISWHCKE 307

Query: 529 --YYRVKALMNEMRTVGLSPNHISWTILI 555
             +     L++     G  PN ++W IL+
Sbjct: 308 GMFDDAHLLLSRGVDSGFIPNEVTWYILV 336



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 49/245 (20%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+FTY+T++       +   A ++  +M   G  PN IT++ LI+     G +E+A ++ 
Sbjct: 13  DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 72

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--------------------L 461
           +EM   G   N+   N L+ A  +  +   A  +F   +                    +
Sbjct: 73  DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKV 132

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT------- 514
           +K + ALG   D   + +          I NT  +  N+   +F +R + +         
Sbjct: 133 NKFEEALGLYQDMLLEGV----------IANTITY--NTLIHAFLRRGAMQEALKLVNDM 180

Query: 515 --------TTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
                     TYN L+KA C   +  +  AL  +M + GL+PN+IS  ILI+    +GN+
Sbjct: 181 LFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNI 240

Query: 565 EGALQ 569
           + AL+
Sbjct: 241 QHALE 245



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 513 PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           P   TYN L+   C   Y V A  LMNEM+  G  PN I++TILID     G +E A
Sbjct: 12  PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEA 68



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 14/187 (7%)

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           + E MLS G  P+  T+++LI      G +  A  L  EM   GCEPN     IL+    
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
           +  + + A  +     +S   +AL  +  G    IS +   +K  + +  N   +     
Sbjct: 61  KEGRLEEARNVLDE--MSGKGLAL--NAVGYNCLISALCKDEK--VQDALNMFGDMSSK- 113

Query: 505 FDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
                  KP   T+N L+   C    +     L  +M   G+  N I++  LI A    G
Sbjct: 114 -----GCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRG 168

Query: 563 NVEGALQ 569
            ++ AL+
Sbjct: 169 AMQEALK 175


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 164/357 (45%), Gaps = 36/357 (10%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           AL+ +   ++    P +     ++DV G  G  + +  A+ E++R+  V  + +  ++++
Sbjct: 108 ALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVI 167

Query: 299 NVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                D  L   +  +++++  G +  + +YN LL+    AGN   A  +   +K +E  
Sbjct: 168 AACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRV---LKEMEDS 224

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  + D  TY+ +   +A A +++ A K  + M S G+ PNT T+++++ A AN G V++
Sbjct: 225 GC-QPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDE 283

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS---------KTQVA 467
           A+ LF+ M + G  PN    N++     +  +F     +    + S          T +A
Sbjct: 284 ALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLA 343

Query: 468 L-----GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK---------- 512
           +      EDY   T  ++ M+    +   +T N + +++     + ++FK          
Sbjct: 344 VCGKRGMEDY--VTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGF 401

Query: 513 -PTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
            P  TTYN L+       D+   ++++++M   G  PN  S+++L+      GN  G
Sbjct: 402 TPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAG 458



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 125/307 (40%), Gaps = 56/307 (18%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN---AHDLKFTLEVYKNMQK 317
           T++      G Y ++  ++ +LR Q V   I  +N +++V           + + + M+ 
Sbjct: 94  TVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRA 153

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            GV  D  + + ++ AC   G   L  +     + L+A+G +   V TY+ +++VF  A 
Sbjct: 154 AGVEPDDFTASTVIAAC---GRDGLLDQAVAFFEDLKARGHVPC-VVTYNALLQVFGKAG 209

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
            +  AL+V ++M  +G  P+ +T++ L    A AG  E+A    + M   G  PN+   N
Sbjct: 210 NYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYN 269

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
            ++ A     + D A  LF                    DR+                  
Sbjct: 270 TVMTAYANVGRVDEALALF--------------------DRM------------------ 291

Query: 498 PNSHYSSFDKRFSFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
                    K+  + P   TYN++  M    + +  +  ++ EM   G +PN ++W  ++
Sbjct: 292 ---------KKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTML 342

Query: 556 DACGGSG 562
             CG  G
Sbjct: 343 AVCGKRG 349



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/398 (20%), Positives = 164/398 (41%), Gaps = 66/398 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   ++ FGK  +   ALR     +     P+      +       G + ++    + 
Sbjct: 196 VTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDT 255

Query: 282 LRSQNVTLNIYVFNSLM--------------------------NVNAHDL---------K 306
           + S+ +  N + +N++M                          NVN ++L         +
Sbjct: 256 MTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSR 315

Query: 307 FT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           FT  LE+ + M + G   +  ++N +L  C   G   +   +   +  +++ GV +L   
Sbjct: 316 FTAMLEMLEEMSRSGCTPNRVTWNTMLAVC---GKRGMEDYVTRVLNGMKSCGV-ELSRD 371

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY+T++  +        A K+ ++M+S+G TP   T+++L+N  +  G    A  +  +M
Sbjct: 372 TYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKM 431

Query: 425 LQAGCEPNSQCCNILLQ--------ACVEACQFD-RAFRLFRSWTLSKTQVALG------ 469
           L+ G +PN Q  ++LLQ        A +E+ + +     +F SW + +T V         
Sbjct: 432 LKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRL 491

Query: 470 EDYDGNTDRISNMEHKDKQSITNT--PNFVPNSHYSS----FD--KRFSFKPTTTTYNIL 521
           E  +     +    +K    I N+    +  N  YS     FD  K+    P   TYN L
Sbjct: 492 EGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSL 551

Query: 522 MK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           M   A   + +  + ++ ++++  + P+ +S+  +I+ 
Sbjct: 552 MDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVING 589



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 110/241 (45%), Gaps = 10/241 (4%)

Query: 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
             I P   IL    +  F K R L    +A+   K     P++ I  +++ +    G Y 
Sbjct: 469 GTIFPSWVILRTLVIANF-KCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYS 527

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+  +++ ++   ++ ++  +NSLM++ A  ++     ++ K ++   V  D+ SYN ++
Sbjct: 528 KATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVI 587

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C  G    AQ I  E   + A G+    V TY T+V  +A  + +  A +V   M+ 
Sbjct: 588 NGFCKQGLIKEAQRILSE---MIADGMAPC-VVTYHTLVGGYASLEMFNEAREVVNYMIH 643

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFD 450
             + P  +T+  ++++   A   ++A     E+  +  + N  Q    +L+A ++  QF 
Sbjct: 644 HNLKPMELTYRRVVDSYCKAKRYDEAREFLSEI--SDTDQNFDQKLQHMLEARIKDAQFG 701

Query: 451 R 451
           R
Sbjct: 702 R 702


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 158/360 (43%), Gaps = 33/360 (9%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295
           L SA R +D+      +PN+Y    ++  +CG  G   ++ +I  D+R      N+  +N
Sbjct: 171 LTSARRFFDSMLSDGVAPNVYTYNILVRALCGR-GHRKEALSILRDMRGAGCGPNVVTYN 229

Query: 296 SLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           +L+     A ++     +   M++ G+  ++ ++N ++   C AG    A++++ E+   
Sbjct: 230 TLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEM--- 286

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
             +  L  D  +Y+T+V  +  A     AL V  +M   G+ P+ +T++SLI+    AG 
Sbjct: 287 -VREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGN 345

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV------A 467
           +E+A+ L  +M + G + N      L+    +    D A    R     + +       A
Sbjct: 346 LERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNA 405

Query: 468 LGEDY------DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK--------- 512
           L   Y      D   + +  ME K  +    T + + +++  + D   +F+         
Sbjct: 406 LINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKG 465

Query: 513 --PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             P   TY+ L++  C +     A  L   M  +GL P+  ++T LID     GNVE AL
Sbjct: 466 VLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESAL 525



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 116/255 (45%), Gaps = 17/255 (6%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+   M+  G+  D+ +Y+ ++ A C   +T  A E+    + +  KGVL  D  TYS++
Sbjct: 421 ELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELN---QQMLEKGVLP-DAITYSSL 476

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           ++V    K    A  + ++M+  G+ P+  T++SLI+     G VE A+ L ++M++AG 
Sbjct: 477 IRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGV 536

Query: 430 EPNSQCCNILLQACVEACQFDRAFR-LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            P+    ++L+    ++ +   A + LF+ +   +  +     YD         E K   
Sbjct: 537 LPDVVTYSVLINGLSKSARAMEAQQLLFKLY--HEDPIPANTKYDALMHCCRKAELKSVL 594

Query: 489 SI------TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMR 540
           ++          N     + S  D+ ++     + Y++L+   C     +KAL    +M 
Sbjct: 595 ALLKGFCMKGLMNEADKVYQSMLDRNWNLD--GSVYSVLIHGHCRAGNVMKALSFHKQML 652

Query: 541 TVGLSPNHISWTILI 555
             G +PN  S   LI
Sbjct: 653 QGGFAPNSTSTISLI 667



 Score = 45.8 bits (107), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 87/193 (45%), Gaps = 15/193 (7%)

Query: 268 ICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMAD 323
           +CG+   S A  +++++    +  + + + SL++ +  +  ++  L ++  M K GV+ D
Sbjct: 480 LCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPD 539

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYS----------TIVKV 372
           + +Y++L+     +   + AQ++  ++ H +      K D   +            ++K 
Sbjct: 540 VVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKG 599

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           F        A KV + ML      +   +S LI+    AG V +A+   ++MLQ G  PN
Sbjct: 600 FCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPN 659

Query: 433 SQCCNILLQACVE 445
           S     L++   E
Sbjct: 660 STSTISLIRGLFE 672


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 137/320 (42%), Gaps = 36/320 (11%)

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE----VY 312
           Y+C+         GD   +R+++  ++    T +I  +NSL  ++ H     L+    ++
Sbjct: 65  YLCKE--------GDLEMARSLFTQMKEAGFTPDIVTYNSL--IDGHGKLGLLDECICIF 114

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M+      D+ +YN L+   C       A E   E+K   A G LK +V TYST +  
Sbjct: 115 EQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMK---ANG-LKPNVVTYSTFIDA 170

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           F      Q A+K   DM    +TPN  T++SLI+A   AG + +A+ L EE+LQAG + N
Sbjct: 171 FCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLN 230

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK--DKQSI 490
                 LL    E  +   A  +FR+         L      N +  + + H     + +
Sbjct: 231 VVTYTALLDGLCEEGRMKEAEEVFRAM--------LNAGVAPNQETYTALVHGFIKAKEM 282

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNH 548
               + +         K    KP    Y  ++   C +      K L+ E++  G++ N 
Sbjct: 283 EYAKDILKEM------KEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNA 336

Query: 549 ISWTILIDACGGSGNVEGAL 568
           + +T L+DA   SG    AL
Sbjct: 337 VIYTTLMDAYFKSGQATEAL 356



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 157/357 (43%), Gaps = 25/357 (7%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K+ DL  A   +   K+   +P++    ++ID  G  G   +   I+E ++  +   ++ 
Sbjct: 68  KEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVI 127

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +N+L+N       +    E    M+  G+  ++ +Y+  + A C  G    A + + ++
Sbjct: 128 TYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDM 187

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + +     L  + FTY++++     A     ALK+ E++L AG+  N +T+++L++    
Sbjct: 188 RRV----ALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCE 243

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--------LS 462
            G +++A  +F  ML AG  PN +    L+   ++A + + A  + +           L 
Sbjct: 244 EGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLL 303

Query: 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
              +  G   +   +    +  + K+S  NT   +   + +  D  F     T    +L 
Sbjct: 304 YGTILWGLCNESRLEEAKLLIGEIKESGINTNAVI---YTTLMDAYFKSGQATEALTLLE 360

Query: 523 KA-------CCTDYYRV-KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           +        C  + + V K L +EM   G+ P+ I++T LID     GN++ AL  R
Sbjct: 361 EMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLR 417



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 112/262 (42%), Gaps = 53/262 (20%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E +  M+K  V     S N LL      G   L+++ +   K + A G+ K  VFTY+ +
Sbjct: 7   ECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFF---KDMGAAGI-KRSVFTYNIM 62

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         +MA  +   M  AG TP+ +T++SLI+     GL+++ + +FE+M  A C
Sbjct: 63  IDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADC 122

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +P+    N L+  C   C+F+R  + F                           H+ K +
Sbjct: 123 DPDVITYNALIN-CF--CKFERMPKAFEFL------------------------HEMKAN 155

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPN 547
                                 KP   TY+  + A C +    +A+    +MR V L+PN
Sbjct: 156 --------------------GLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPN 195

Query: 548 HISWTILIDACGGSGNVEGALQ 569
             ++T LIDA   +GN+  AL+
Sbjct: 196 EFTYTSLIDANCKAGNLAEALK 217



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 101/483 (20%), Positives = 199/483 (41%), Gaps = 70/483 (14%)

Query: 114 EMVASGIVKSI-----------REGRIDCVVGVLKKLNELGVAPL-----ELFDGSGFKL 157
           +M A+GI +S+           +EG ++    +  ++ E G  P       L DG G   
Sbjct: 46  DMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLG 105

Query: 158 LKNEC----QRLLDSG---EVEMFVGLMEVLEEF-RLPVK-ELDEEFRIVQLCVNKPDVN 208
           L +EC    +++ D+    +V  +  L+    +F R+P   E   E +   L   KP+V 
Sbjct: 106 LLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGL---KPNV- 161

Query: 209 LAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268
                        + +  F+  F K+  L  A++ +   ++   +PN +   ++ID    
Sbjct: 162 -------------VTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCK 208

Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMAS 326
            G+  ++  + E++    + LN+  + +L++    +  +K   EV++ M   GV  +  +
Sbjct: 209 AGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQET 268

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           Y  L+     A     A++I  E+K    +  +K D+  Y TI+    +    + A  + 
Sbjct: 269 YTALVHGFIKAKEMEYAKDILKEMK----EKCIKPDLLLYGTILWGLCNESRLEEAKLLI 324

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
            ++  +G+  N + +++L++A   +G   +A+ L EEML           +++   C   
Sbjct: 325 GEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEML-----------DLVDGLCKNN 373

Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
           C F+ A +LF    L K  +     Y    D   NM+H + Q   N  +          +
Sbjct: 374 C-FEVAKKLFDEM-LDKGMMPDKIAYTALID--GNMKHGNLQEALNLRD-------RMIE 422

Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
                     T  I   +      + + L++EM   G+ P+ + +  LI      G V+ 
Sbjct: 423 IGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDE 482

Query: 567 ALQ 569
           AL+
Sbjct: 483 ALE 485


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 113/225 (50%), Gaps = 13/225 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN+    T+ID  G C  G+  KSR +   L       +I+ F+S+++    A  ++  L
Sbjct: 495 PNLVTFNTLID--GYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDAL 552

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
             +  M   G+  +  +YNIL+ + C+ G+   + ++   ++ ++  G+   DVF+++ +
Sbjct: 553 GCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKL---LRKMQTDGI-NPDVFSFNAL 608

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           ++ F      + A K+   MLS G+ P+  T+ + I     +G   +A  LF  M   GC
Sbjct: 609 IQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGC 668

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRS---WTLSKTQVALGED 471
            P+S  CNI+L A V+  QF+ A ++ ++   W +     A+ ED
Sbjct: 669 MPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGILVNFAAISED 713



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 117/299 (39%), Gaps = 35/299 (11%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           V ++L+  N+ DL +    ++ M       D  +YNIL+   C +G   +  E    VK 
Sbjct: 223 VIDALVKSNSLDLAYL--KFQQMSADNCKPDRFTYNILIHGVCRSG---VVDEALRLVKQ 277

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +E  G    +VFTY+ ++  F +AK    A +V E M +  V+P+  T  S I+      
Sbjct: 278 MEGLGY-SPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVFRCV 336

Query: 413 LVEQAMHLFEEMLQAGCEPNSQ--------CC----NILLQACVEACQFDRAFRLFRSWT 460
              +A  L  E ++   EP  Q        CC    N+  +A     +F +      S T
Sbjct: 337 APNKAFELAIEFIER--EPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIGHKPDSAT 394

Query: 461 LSKTQVALGEDYDGNT-----DRISNMEHKDK--------QSITNTPNFVPNSHYSSFDK 507
            +     L + +D N      DR      K          +++         +HY +   
Sbjct: 395 FNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMV 454

Query: 508 RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           +        +YN+++   C      KA     EM+  G+ PN +++  LID     G +
Sbjct: 455 KDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEI 513



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 4/158 (2%)

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
            ++E+ K+++  G   +     IL+ +    G      EI+G++  L      +L    Y
Sbjct: 165 LSVELLKDIKASGYRINEELLCILIGSWGRLGLAKYCDEIFGQISFLGISPSTRL----Y 220

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + ++     +    +A    + M +    P+  T++ LI+    +G+V++A+ L ++M  
Sbjct: 221 NAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEG 280

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
            G  PN     IL+     A + D AFR+  +    K 
Sbjct: 281 LGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKV 318



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 12/150 (8%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----NAHDLKF 307
           SPN      +I    I GD  +S  +   +++  +  +++ FN+L+          D K 
Sbjct: 564 SPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAK- 622

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
             +++ +M  LG++ D  +Y   +K  C +G    A+E++     +EA G +  D FT +
Sbjct: 623 --KLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELF---LSMEANGCMP-DSFTCN 676

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            I+        ++ A K+ +     G+  N
Sbjct: 677 IILDALVKQDQFEAAQKIAKTCSEWGILVN 706


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 150/348 (43%), Gaps = 39/348 (11%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLK 306
           SPN+Y    +I   G C  G+  K    + ++       N+  +N+L++    +   D  
Sbjct: 7   SPNVYTYNILIR--GFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEA 64

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
           F L   K+M   G+  ++ SYN+++   C  G+   A EI  E+ +   KG    D  TY
Sbjct: 65  FGL--LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGY---KGFTP-DEVTY 118

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++  +     +  AL +  +M+  GV+P+ +T+++LIN+   A  + +AM  F++M  
Sbjct: 119 NTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRI 178

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGN--TDRISN 481
            G  PN +    L+         + A+R+    T    S + V       G+   +R+  
Sbjct: 179 RGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEE 238

Query: 482 MEHKDKQSITN--TPNFVPNS-------HYSSFDKRFSFK---------PTTTTYNILMK 523
                ++ +     P+ V  S            D+ F  K         P   TY+ L++
Sbjct: 239 ALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ 298

Query: 524 ACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             C      +A  L  EM  +GL P+  ++T LI+A    G++  AL 
Sbjct: 299 GLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALH 346



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 147/335 (43%), Gaps = 17/335 (5%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K R+L  A+  +D  +     PN     T+ID     G   ++  I  ++     + ++ 
Sbjct: 162 KARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVV 221

Query: 293 VFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +N+ ++ +     ++  L V + M + G+  D+ SY+ ++   C  G    A ++  E 
Sbjct: 222 TYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQE- 280

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
             +  KGV   D  TYS++++   + +    A  + ++ML  G+ P+  T+++LINA   
Sbjct: 281 --MVEKGV-SPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCV 337

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G + +A+HL +EM+  G  P++   ++L+    +  +   A RL       ++ V    
Sbjct: 338 EGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEES-VPSDV 396

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF------SFKPTTTTYNILMKA 524
            YD   +  SN+E K   ++     F         D+ F      + KP    YN+++  
Sbjct: 397 TYDTLIENCSNIEFKSVVALIK--GFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHG 454

Query: 525 CCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
            C      KA  L  EM   G  P+ ++   LI A
Sbjct: 455 HCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKA 489



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 112/280 (40%), Gaps = 35/280 (12%)

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           V  ++ +YNIL++  C  G        +GE   +E  G L  +V TY+T++  +      
Sbjct: 6   VSPNVYTYNILIRGFCSVGELQKGLGCFGE---MERNGCLP-NVVTYNTLIDAYCKMGRI 61

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
             A  + + M S G+ PN I+++ +IN     G +++A  + EEM   G  P+    N L
Sbjct: 62  DEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTL 121

Query: 440 LQACVEACQFDRAFRLFRSWTLSK------TQVALGEDYDGNTDRISNMEHKDKQSITNT 493
           L    +   F +A  +      +       T  AL        +    ME  D+  I   
Sbjct: 122 LNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIR-- 179

Query: 494 PNFVPNSH-YSSFDKRFS-------------------FKPTTTTYNILMKACCTDYYRVK 533
               PN   Y++    FS                   F P+  TYN  +   C      +
Sbjct: 180 -GLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEE 238

Query: 534 AL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           AL  + EM   GL+P+ +S++ +I      G ++ A Q +
Sbjct: 239 ALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMK 278



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 25/194 (12%)

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M+ + V+PN  T++ LI    + G +++ +  F EM + GC PN    N L+ A  +  +
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 449 FDRAFRLFRSWTLSKTQVAL--------GEDYDGNTDR----ISNMEHKDKQSITNTPNF 496
            D AF L +S +    Q  L        G   +G+       +  M +K       T N 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 497 VPNSH--YSSFDK---------RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVG 543
           + N +    +F +         R    P+  TY  L+ + C   +  R     ++MR  G
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 544 LSPNHISWTILIDA 557
           L PN  ++T LID 
Sbjct: 181 LRPNERTYTTLIDG 194


>gi|224031359|gb|ACN34755.1| unknown [Zea mays]
          Length = 504

 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 107/221 (48%), Gaps = 2/221 (0%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F    + FG+  D       +   ++    PN+++   +++  G  G    +R ++E+
Sbjct: 82  VAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLFEE 141

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q V  N     +L  +   A   +  L+++  M++L + AD    N LL  C   G 
Sbjct: 142 MIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADSILCNTLLSMCADVGL 201

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A++++ E+K  E + V K D ++Y+ ++ ++        AL++  +ML  G+ PN +
Sbjct: 202 VAEAEQLFNEMKDPECRDVPKPDKWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIM 261

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           +++ +I     A  ++QA+ + E  L+ G +P+ + C  LL
Sbjct: 262 SYTIVIQCLGKARRIQQAVEVLESGLEKGLKPDDRLCGCLL 302



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 126/313 (40%), Gaps = 50/313 (15%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV-FNSLMNVNAHDLKFTLEV---YKNMQ 316
           T+I     C  + K+   +E + + +  L   V ++++++V A  L    EV   +   +
Sbjct: 15  TLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQ-LGMKEEVLALFDRAR 73

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
             G   D  ++ +L K    AG+    Q ++ E++ +     +K ++F Y+ +++     
Sbjct: 74  GSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVG----IKPNIFVYNALLEALGKT 129

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
               +A  + E+M+  GV PN  T ++L      A     A+ L+++M +     +S  C
Sbjct: 130 GKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADSILC 189

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           N LL  C +      A +LF                    + + + E +D          
Sbjct: 190 NTLLSMCADVGLVAEAEQLF--------------------NEMKDPECRD---------- 219

Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556
           VP     S+         T   NI      TD      L  EM   G+ PN +S+TI+I 
Sbjct: 220 VPKPDKWSY---------TAMINIYGSNGDTD--SALQLFAEMLKGGIEPNIMSYTIVIQ 268

Query: 557 ACGGSGNVEGALQ 569
             G +  ++ A++
Sbjct: 269 CLGKARRIQQAVE 281


>gi|298705285|emb|CBJ48975.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 674

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 127/312 (40%), Gaps = 20/312 (6%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           T+I  CG  G +  + ++ +++           F S M     A      L +   MQ+ 
Sbjct: 220 TVISACGKSGQWSLAVSLLDEMSDMGCPPGPVTFASAMLACERARQWHHVLRIMDQMQED 279

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
            V  D  +Y   + A    G          E   +++ GV K DV T S  +   AD   
Sbjct: 280 EVWVDKYAYTTAIHAAGQLGKWARCVRYLDE---MDSNGVAK-DVVTVSVAISACADKGQ 335

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           W  A K+ EDML  G+TPN IT++SL+      G  E+A+ + + M   G  PN +  ++
Sbjct: 336 WAQAEKLLEDMLDDGLTPNVITYTSLMVVLRRGGQHERAIKILDLMRSKGVMPNVRTYSV 395

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
            + AC +A ++ RA  L +   + +  V+  E       R       D   ++   + + 
Sbjct: 396 AIAACADAKEWRRALALLKE--MEREGVSPNEISYNTAIRACG----DAGQLSEALDLM- 448

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILID 556
                  + R   K +  TY   + AC    D+     L+  MR   + PN I +  +I 
Sbjct: 449 ----DEMESR-GVKASVVTYGTAVAACQRAADWKMALELLAAMRREQIEPNEIVYGGIIK 503

Query: 557 ACGGSGNVEGAL 568
           AC  +G    AL
Sbjct: 504 ACCAAGQASKAL 515



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 106/252 (42%), Gaps = 52/252 (20%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +PN+    +++ V    G + ++  I + +RS+ V  N+  ++  +    +A + +  L 
Sbjct: 352 TPNVITYTSLMVVLRRGGQHERAIKILDLMRSKGVMPNVRTYSVAIAACADAKEWRRALA 411

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + K M++ GV  +  SYN  ++AC  AG    A ++  E   +E++GV K  V TY T V
Sbjct: 412 LLKEMEREGVSPNEISYNTAIRACGDAGQLSEALDLMDE---MESRGV-KASVVTYGTAV 467

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV---------------- 414
                A  W+MAL++   M    + PN I +  +I AC  AG                  
Sbjct: 468 AACQRAADWKMALELLAAMRREQIEPNEIVYGGIIKACCAAGQASKALVDADQIEEAIQL 527

Query: 415 ------------------------------EQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
                                         ++A+ LF+EM      P  QC   +++AC 
Sbjct: 528 FNKLQARRNCSVTIHSYTPLVDALTRELRWQEAIMLFQEMEDRKIMPTVQCYTSVVRACE 587

Query: 445 EACQFDRAFRLF 456
            + Q+D A RL 
Sbjct: 588 RSGQYDVALRLL 599



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 153/357 (42%), Gaps = 11/357 (3%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P   + F + +    + R     LR  D  ++     + Y   T I   G  G + +   
Sbjct: 247 PPGPVTFASAMLACERARQWHHVLRIMDQMQEDEVWVDKYAYTTAIHAAGQLGKWARCVR 306

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACC 335
             +++ S  V  ++   +  ++  A   ++    ++ ++M   G+  ++ +Y  L+    
Sbjct: 307 YLDEMDSNGVAKDVVTVSVAISACADKGQWAQAEKLLEDMLDDGLTPNVITYTSLMVVLR 366

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    A +I   +  + +KGV+  +V TYS  +   ADAK W+ AL + ++M   GV+
Sbjct: 367 RGGQHERAIKI---LDLMRSKGVMP-NVRTYSVAIAACADAKEWRRALALLKEMEREGVS 422

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN I++++ I AC +AG + +A+ L +EM   G + +       + AC  A  +  A  L
Sbjct: 423 PNEISYNTAIRACGDAGQLSEALDLMDEMESRGVKASVVTYGTAVAACQRAADWKMALEL 482

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH-YSSFDKRFSFKPT 514
             +  + + Q+   E   G   +      +  +++ +          ++    R +   T
Sbjct: 483 LAA--MRREQIEPNEIVYGGIIKACCAAGQASKALVDADQIEEAIQLFNKLQARRNCSVT 540

Query: 515 TTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             +Y  L+ A   +    +A+M   EM    + P    +T ++ AC  SG  + AL+
Sbjct: 541 IHSYTPLVDALTRELRWQEAIMLFQEMEDRKIMPTVQCYTSVVRACERSGQYDVALR 597



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/343 (19%), Positives = 144/343 (41%), Gaps = 32/343 (9%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDL-RSQNVTLNIYVFNSLMNVNAH--DLKFTLE 310
           PN+     +I  C       ++  I+ ++ + + +  N++ + +L++  A   + + ++ 
Sbjct: 107 PNVVSYNNVITACANAKKQKRAEGIFREMTKERGIRPNVFTYGALISACAKRGNWEDSVN 166

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
             + M++ G+  +   Y+ ++ AC  +     A ++   ++ +   G+L + V TY+T++
Sbjct: 167 YLEQMRQSGLAPNAVIYSTVISACERSDQWQKAVKL---LRTMRRDGILPVTV-TYNTVI 222

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                +  W +A+ + ++M   G  P  +T++S + AC  A      + + ++M +    
Sbjct: 223 SACGKSGQWSLAVSLLDEMSDMGCPPGPVTFASAMLACERARQWHHVLRIMDQMQEDEVW 282

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEH--- 484
            +       + A  +  ++ R  R      S  ++K  V +        D+    +    
Sbjct: 283 VDKYAYTTAIHAAGQLGKWARCVRYLDEMDSNGVAKDVVTVSVAISACADKGQWAQAEKL 342

Query: 485 -KDKQSITNTPNFVP-----------NSHYSSFD-----KRFSFKPTTTTYNILMKAC-- 525
            +D      TPN +              H  +       +     P   TY++ + AC  
Sbjct: 343 LEDMLDDGLTPNVITYTSLMVVLRRGGQHERAIKILDLMRSKGVMPNVRTYSVAIAACAD 402

Query: 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             ++ R  AL+ EM   G+SPN IS+   I ACG +G +  AL
Sbjct: 403 AKEWRRALALLKEMEREGVSPNEISYNTAIRACGDAGQLSEAL 445



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 119/288 (41%), Gaps = 21/288 (7%)

Query: 287 VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLA 343
           V  N+  +N+++    NA   K    +++ M K  G+  ++ +Y  L+ AC   GN    
Sbjct: 105 VEPNVVSYNNVITACANAKKQKRAEGIFREMTKERGIRPNVFTYGALISACAKRGNW--- 161

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
           ++    ++ +   G L  +   YST++     +  WQ A+K+   M   G+ P T+T+++
Sbjct: 162 EDSVNYLEQMRQSG-LAPNAVIYSTVISACERSDQWQKAVKLLRTMRRDGILPVTVTYNT 220

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           +I+AC  +G    A+ L +EM   GC P        + AC  A Q+    R+       +
Sbjct: 221 VISACGKSGQWSLAVSLLDEMSDMGCPPGPVTFASAMLACERARQWHHVLRIMDQMQEDE 280

Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
             V    D    T  I       K        +     Y              T ++ + 
Sbjct: 281 VWV----DKYAYTTAIHAAGQLGK--------WARCVRYLDEMDSNGVAKDVVTVSVAIS 328

Query: 524 ACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           AC     + + + L+ +M   GL+PN I++T L+      G  E A++
Sbjct: 329 ACADKGQWAQAEKLLEDMLDDGLTPNVITYTSLMVVLRRGGQHERAIK 376



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 85/181 (46%), Gaps = 9/181 (4%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           SPN     T I  CG  G   ++  + +++ S+ V  ++  + + +     A D K  LE
Sbjct: 422 SPNEISYNTAIRACGDAGQLSEALDLMDEMESRGVKASVVTYGTAVAACQRAADWKMALE 481

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNT----VLAQEIYGEVK---HLEAKGVLKLDV 363
           +   M++  +  +   Y  ++KACC AG      V A +I   ++    L+A+    + +
Sbjct: 482 LLAAMRREQIEPNEIVYGGIIKACCAAGQASKALVDADQIEEAIQLFNKLQARRNCSVTI 541

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            +Y+ +V        WQ A+ + ++M    + P    ++S++ AC  +G  + A+ L ++
Sbjct: 542 HSYTPLVDALTRELRWQEAIMLFQEMEDRKIMPTVQCYTSVVRACERSGQYDVALRLLDD 601

Query: 424 M 424
           M
Sbjct: 602 M 602


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 133/321 (41%), Gaps = 59/321 (18%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           +PN+    ++ID  G+C  G    ++ +++ +  + +  N+  +NSL++     + +   
Sbjct: 249 TPNVITYSSLID--GLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSA 306

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L + + M   G + D+ +YN L+   C  G    A  ++G++K   AK     DV TYS 
Sbjct: 307 LLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMK---AK-FCNPDVITYSC 362

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F   +   MA  + +DML   V P+ +T+S+L+    NAGLV+ A  L EEM+ + 
Sbjct: 363 LIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASD 422

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           C P+      L+    +  +   A R+ +       Q                       
Sbjct: 423 CSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQ----------------------- 459

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
                                   P   TY  L+ A C       A  L+ EM   G+ P
Sbjct: 460 ------------------------PNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQP 495

Query: 547 NHISWTILIDACGGSGNVEGA 567
           N I++  LI    G+G++E A
Sbjct: 496 NVITYRSLIGGFCGTGDLEEA 516



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 110/266 (41%), Gaps = 34/266 (12%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M+K G + +  +YN+L+   C           Y  +K ++  G L  +V TYST++ 
Sbjct: 30  FAKMKKKGTVPNEWTYNVLINGFCKVHKV---HRAYLLLKEMKESG-LAPNVVTYSTVIH 85

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F        A K+   M+  G  PN +T+++L++     GL+++A  L +EM + G +P
Sbjct: 86  GFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQP 145

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWT--------LSKTQVALGEDYDGNTDRISNME 483
           +    + L+    +  + D A ++F   +        ++ + +  G    G  D    + 
Sbjct: 146 DKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLF 205

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRT 541
            K +++                    S +P   T+  LM   C        + ++  M  
Sbjct: 206 EKMREN--------------------SCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 245

Query: 542 VGLSPNHISWTILIDACGGSGNVEGA 567
              +PN I+++ LID    +G V  A
Sbjct: 246 RNCTPNVITYSSLIDGLCKTGQVRDA 271



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 148/354 (41%), Gaps = 28/354 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IY 279
           + +   +  F ++  + +A + +    ++   PN+    T++   G+C + +   A  + 
Sbjct: 78  VTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS--GLCRNGLMDEAYELL 135

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           +++R + +  + + +++LM        +   L+V+++        D+ +Y+ L+   C  
Sbjct: 136 DEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKT 195

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A +++ +++    +   + DV T++ ++         Q A +V E M     TPN
Sbjct: 196 GRLDEACKLFEKMR----ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN 251

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            IT+SSLI+     G V  A  +F+ M+  G EPN    N L+         D A  L  
Sbjct: 252 VITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLME 311

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF-KPTTT 516
             T +              D I+     D    T      P ++    D +  F  P   
Sbjct: 312 EMTATGCL----------PDIITYNTLIDGLCKTGR---APEANRLFGDMKAKFCNPDVI 358

Query: 517 TYNILMKACCTDYYRV---KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           TY+ L+   C    R+   + L ++M    + P+ ++++ L++    +G V+ A
Sbjct: 359 TYSCLIGGFCK-LERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDA 411



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 6/152 (3%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +R +++D+  Q V  ++  F++L+    NA  +     + + M       D+ +Y  L+ 
Sbjct: 376 ARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 435

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G  V A+ +   +K +  +G  + +V TY+ ++  F  A    +A K+ E+M+  
Sbjct: 436 GFCKVGRMVEARRV---LKRMAKRGC-QPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGN 491

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           GV PN IT+ SLI      G +E+A  + E +
Sbjct: 492 GVQPNVITYRSLIGGFCGTGDLEEARKMLERL 523



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 78/212 (36%), Gaps = 53/212 (25%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +V T++ ++     A     A      M   G  PN  T++ LIN       V +A  L 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
           +EM ++G  PN    + ++       + D A++LFR                        
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFR------------------------ 101

Query: 482 MEHKDKQSITN--TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMN 537
                 Q + N   PN V                   TYN L+   C +    +A  L++
Sbjct: 102 ------QMVENGCMPNLV-------------------TYNTLLSGLCRNGLMDEAYELLD 136

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           EMR  GL P+  S+  L+     +G ++ AL+
Sbjct: 137 EMRERGLQPDKFSYDTLMAGLCKTGKIDMALK 168



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 14/209 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           + + V  F K   +V A R      K    PN+     +ID     G    +  + E++ 
Sbjct: 430 YTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMV 489

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL----GVMADMASYNILLKACCLA 337
              V  N+  + SL+       DL+   E  K +++L       ADM +Y +++   C  
Sbjct: 490 GNGVQPNVITYRSLIGGFCGTGDLE---EARKMLERLERDENCKADMFAYRVMMDGLCRT 546

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM-LSAGVTP 396
           G    A E+   +K  ++    + D+  Y  +++     K    A++V E+M LS    P
Sbjct: 547 GRMSAALELLEAIK--QSGTPPRHDI--YVALIRGLCQGKELGKAMEVLEEMTLSRKSRP 602

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEML 425
           N   + ++I   A  G  E+A  L +E+L
Sbjct: 603 NAEAYEAVIQELAREGRHEEANALADELL 631


>gi|302768505|ref|XP_002967672.1| hypothetical protein SELMODRAFT_88400 [Selaginella moellendorffii]
 gi|300164410|gb|EFJ31019.1| hypothetical protein SELMODRAFT_88400 [Selaginella moellendorffii]
          Length = 717

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 9/227 (3%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295
           D +  L A    K   + PN     T I  C   G   ++R I +++ +Q V  N+  +N
Sbjct: 373 DAMQLLVAMQQEKTSAAMPNEVTFTTAIRACAKMGLLDEARVILQEMATQKVAANVVTYN 432

Query: 296 SLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +L+         D+K  LE+ ++M++ GV  D+ SYN L+     AG+   A  ++  ++
Sbjct: 433 TLLQGVCVFPITDMKRALEIVEDMKEAGVELDVVSYNTLINGYLEAGDNEQALAVFTRMR 492

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM-LSAGVTPNTITWSSLINACAN 410
             EAK  +     TY T++K FA +   ++ +KV   M L   V  + + W++LI+A A 
Sbjct: 493 --EAK--VPASKVTYGTLMKAFARSGRTELVVKVFTQMALDPRVRVDVVAWNTLIDAYAR 548

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           AGL + A    E+M   G  P +   N L++    +  F +   L++
Sbjct: 549 AGLEQDATRALEDMKSRGFSPTNATYNTLVKTYGRSRNFGQLILLWK 595



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 24/190 (12%)

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+T  +++ +NACAN G +E+A  L+E M   G + N+   N++++      + D+  ++
Sbjct: 229 PDTGAFNAALNACANIGNLERAEQLWELMPAFGVKANTLTFNVMIKLYARVEKLDKLEQI 288

Query: 456 FRSW-------------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
             +              +L    V LGE      + I      + +     P  +P    
Sbjct: 289 LHTMADADVDPDATTFNSLVAAFVGLGE--LSLAESIVQSLRGEGEHQKRVPALLPKLRE 346

Query: 503 SSFDKRFSFKPTTTTYNILMKAC-----CTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
            S      F+P   TY  LMK        +D  ++   M + +T    PN +++T  I A
Sbjct: 347 HS----AKFQPDVRTYTTLMKGYVQHNRVSDAMQLLVAMQQEKTSAAMPNEVTFTTAIRA 402

Query: 558 CGGSGNVEGA 567
           C   G ++ A
Sbjct: 403 CAKMGLLDEA 412



 Score = 45.8 bits (107), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 23/210 (10%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK---VF-- 373
             M +  ++   ++AC   G    A+ I  E+    A   +  +V TY+T+++   VF  
Sbjct: 388 AAMPNEVTFTTAIRACAKMGLLDEARVILQEM----ATQKVAANVVTYNTLLQGVCVFPI 443

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
            D K    AL++ EDM  AGV  + +++++LIN    AG  EQA+ +F  M +A    + 
Sbjct: 444 TDMK---RALEIVEDMKEAGVELDVVSYNTLINGYLEAGDNEQALAVFTRMREAKVPASK 500

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
                L++A   + + +   ++F       TQ+AL  D     D ++     D  +    
Sbjct: 501 VTYGTLMKAFARSGRTELVVKVF-------TQMAL--DPRVRVDVVAWNTLIDAYARAGL 551

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
                 +      + FS  PT  TYN L+K
Sbjct: 552 EQDATRALEDMKSRGFS--PTNATYNTLVK 579


>gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
 gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
          Length = 704

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 121/239 (50%), Gaps = 7/239 (2%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           D+ +   +  +G+  ++  A   YD ++      +     T+I + G+ G+Y     +YE
Sbjct: 249 DVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYE 308

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++++  +  N+ ++N L++    A        +YK M K G     A+Y  LL+A   A 
Sbjct: 309 EMKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRAR 368

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TPN 397
               A  +Y E+K    KG L+L+V  Y+T++ + AD  +   A+++ +DM S+G  +P+
Sbjct: 369 YGEDALIVYKEMKE---KG-LQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPD 424

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           + T+SS+I   +  G V +A  +  +M++AG +PN      L+Q   +A + D   R F
Sbjct: 425 SWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTF 483



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 27/230 (11%)

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+  +KVF   +  + A K+ E+M++ GV P+ +T+S++I+      L  +A+  FE+M 
Sbjct: 182 YNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFSTIISCARLCSLPSKAVEWFEKMP 241

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLF-----RSWTLSKTQVALG---EDYDGNTD 477
              C P+    + ++ A   A   D AF L+      +W +     +         GN D
Sbjct: 242 SFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYD 301

Query: 478 RISNMEHKDKQSITNTPNFV--------------PNSHYSSFDK--RFSFKPTTTTYNIL 521
              N+ +++ ++I   PN V              P    + + +  +  F P+  TY  L
Sbjct: 302 GCLNV-YEEMKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL 360

Query: 522 MKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           ++A     Y   AL+   EM+  GL  N I +  L+  C   G V  A++
Sbjct: 361 LRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVE 410



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 130/312 (41%), Gaps = 33/312 (10%)

Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMAS 326
           C D   +  ++E++ ++ V  +   F+++++           +E ++ M       D  +
Sbjct: 192 CRDMEGAEKLFEEMINRGVKPDNVTFSTIISCARLCSLPSKAVEWFEKMPSFDCNPDDVT 251

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           Y+ ++ A   AGN  +A  +Y   +        ++D  T+ST++K+   A  +   L V 
Sbjct: 252 YSTMIDAYGRAGNVDMAFSLYDRARTEN----WRIDPATFSTMIKIHGVAGNYDGCLNVY 307

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           E+M + G+ PN + ++ L++A   A    Q   +++EM++ G  P+      LL+A   A
Sbjct: 308 EEMKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRA 367

Query: 447 CQFDRAFRLFRSW---------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
              + A  +++            L  T +A+  D  G  +    +    K S T +P+  
Sbjct: 368 RYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADV-GYVNEAVEIFQDMKSSGTCSPD-- 424

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
                      ++F    T Y     +C       + ++N+M   G  PN    T LI  
Sbjct: 425 ----------SWTFSSMITIY-----SCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQC 469

Query: 558 CGGSGNVEGALQ 569
            G +  V+  ++
Sbjct: 470 YGKAKRVDDVVR 481


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 162/404 (40%), Gaps = 87/404 (21%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLN 290
           ++ D + A R +D   +    P + I   +I   G+CG+   S A  ++  +R+  +  N
Sbjct: 205 RQGDFLKAFRLFDEMIEKKIFPTVVIYTILIR--GLCGESRISEAESMFRTMRNSGMLPN 262

Query: 291 IYVFNSLMNVN---AHDLKFTLEVYKNMQKLGVMA------------------------- 322
           +Y +N++M+     AH +K  LE+Y  M   G++                          
Sbjct: 263 LYTYNTMMDGYCKIAH-VKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFL 321

Query: 323 -DMAS---------YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
            DMAS         YN L+   C AGN   A  ++ E++  E    +  DVFTYS ++K 
Sbjct: 322 IDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE----ILPDVFTYSILIKG 377

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                  + A  + ++M   G  PN +T+++LI+     G +E+A+ +  +M + G EPN
Sbjct: 378 LCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPN 437

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTL--------SKTQVALGEDYDGNTDRISNMEH 484
               + L+    +A + + A  L+    +        + T +  G   DGNT     + H
Sbjct: 438 IITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRL-H 496

Query: 485 KDKQSITNTPN----------FVPNSHYSSFDKRFSFKPTTTT----------------- 517
           K+ Q     PN             +   S   K F  K  T T                 
Sbjct: 497 KEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNH 556

Query: 518 --YNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
             Y  L++  CTD   ++     ++MR  GL P+  +  ++I  
Sbjct: 557 VMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQG 600



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 120/320 (37%), Gaps = 55/320 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P M  C  ++D     G +     +Y D+ ++  + N+  + +L++      D      +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M +  +   +  Y IL++  C       A+ ++   + +   G+L  +++TY+T++ 
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMF---RTMRNSGMLP-NLYTYNTMMD 271

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +      + AL++  +ML  G+ PN +T+  LI+       +  A     +M   G  P
Sbjct: 272 GYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           N    N L+    +A     A  L                                    
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSL------------------------------------ 355

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHI 549
                     +S  +K     P   TY+IL+K  C          L+ EM+  G  PN +
Sbjct: 356 ----------HSEIEKH-EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAV 404

Query: 550 SWTILIDACGGSGNVEGALQ 569
           ++  LID     GN+E A++
Sbjct: 405 TYNTLIDGYCKEGNMEKAIE 424


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 140/306 (45%), Gaps = 28/306 (9%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   K+ A+ +++ S  +  N   ++ L+N  ++ HD      ++++M K G+  D A Y
Sbjct: 442 GKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIY 501

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N+L++A C  GN   A  I+  +K    K  ++    T+  I++ FA A   + AL   +
Sbjct: 502 NLLVEAFCKMGNMDRAIRIFERMK----KERMQPSNRTFRPIIEGFAVAGDMKRALDTLD 557

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            M  +G  P  +T+++LI+       VE+A+ + ++M  AG  PN     I+++    + 
Sbjct: 558 LMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASG 617

Query: 448 QFDRAFRLFRSWTLS--KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF--VPNSHYS 503
              +AF  F     S  K  V + E       +   M+     ++T   +F  +P +   
Sbjct: 618 DIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ--SALAVTREMSFQKIPRN--- 672

Query: 504 SFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561
                      T  YNIL+       D +    LM +M+  G+ PN  ++T  I+AC  +
Sbjct: 673 -----------TFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKA 721

Query: 562 GNVEGA 567
           G+++ A
Sbjct: 722 GDMQRA 727



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 105/228 (46%), Gaps = 6/228 (2%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            V  F K  ++  A+R ++  KK    P+    R II+   + GD  ++    + +R   
Sbjct: 504 LVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSG 563

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
               +  +N+L++  +  H ++  + V   M   G+  +  +Y I+++    +G+   A 
Sbjct: 564 CAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAF 623

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           E + ++K    +  LKLDV+ Y T+++    +   Q AL V  +M    +  NT  ++ L
Sbjct: 624 EYFTKIK----ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 679

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           I+  A  G V +A  L ++M + G  PN       + AC +A    RA
Sbjct: 680 IDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRA 727



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 150/376 (39%), Gaps = 94/376 (25%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327
           GD   +RA +E++R++ +  N +VF SL++  A   D++  L   + M+  G+   + +Y
Sbjct: 267 GDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLEMTVVTY 326

Query: 328 NILL-----------------------------------KACCLAGNTVLAQEIYGEVKH 352
           +IL+                                    A C +GN   A+E+   V+ 
Sbjct: 327 SILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEEL---VRE 383

Query: 353 LEAKGV----------------------------------LKLDVFTYSTIVKVFADAKW 378
           +E  G+                                   +  + +Y  ++ ++     
Sbjct: 384 MEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGK 443

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              AL V ++M S G+  N  T+S LIN   +      A  +FE+M+++G +P+    N+
Sbjct: 444 VPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNL 503

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR--ISNME-HKDKQSITNTPN 495
           L++A  +    DRA R+F      + Q +        T R  I       D +   +T +
Sbjct: 504 LVEAFCKMGNMDRAIRIFERMKKERMQPS------NRTFRPIIEGFAVAGDMKRALDTLD 557

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTI 553
            +         +R    PT  TYN L+      +   R  +++++M   G++PN  ++TI
Sbjct: 558 LM---------RRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTI 608

Query: 554 LIDACGGSGNVEGALQ 569
           ++     SG++  A +
Sbjct: 609 IMRGYAASGDIGKAFE 624



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 90/182 (49%), Gaps = 6/182 (3%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           +R +    D+  A   +   K+     ++YI  T++  C   G    + A+  ++  Q +
Sbjct: 610 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKI 669

Query: 288 TLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             N +++N L++  A   D+    ++ K M++ G+  ++ ++   + ACC AG+   A+ 
Sbjct: 670 PRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAEN 729

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +  E+    A   LK +V T++T++K +A       ALK  E+M SAG+ P+   +  L+
Sbjct: 730 VIQEM----ADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLV 785

Query: 406 NA 407
            +
Sbjct: 786 TS 787



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +PN +    I+      GD  K+   +  ++   + L++Y++ +L+     +  ++  L 
Sbjct: 600 APNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALA 659

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M    +  +   YNIL+      G+   A ++   +K ++  G+   ++ T+++ +
Sbjct: 660 VTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADL---MKQMKEDGIPP-NIHTFTSYI 715

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A   Q A  V ++M   G+ PN  T+++LI   A   L ++A+  FEEM  AG +
Sbjct: 716 NACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLK 775

Query: 431 PNSQCCNILL 440
           P+    + L+
Sbjct: 776 PDEAAYHCLV 785


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 152/351 (43%), Gaps = 42/351 (11%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           +FG+   ++S +      +K    P++     ++D     GD   + A+ + + S+ +  
Sbjct: 174 QFGEVDTVISEM------EKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKP 227

Query: 290 NIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
            +  +NS++     + ++    EV++ M   GV  D+ S+N+L+   C AG    A   Y
Sbjct: 228 GLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFY 287

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            E++       +  DV ++S ++ +F        A +   +M   G+ P+ + ++ +I  
Sbjct: 288 KEMRGRR----VTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGG 343

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT------- 460
              AGL+ +A+ + +EM+  GC P+    N LL    +  +   A  L            
Sbjct: 344 FCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPD 403

Query: 461 -LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
             + T +  G   DGN ++   ++  D  S                D+R   +P   TYN
Sbjct: 404 LCTFTTLIHGYCRDGNIEKA--LQFFDTIS----------------DQR--LRPDIVTYN 443

Query: 520 ILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            L+   C   D  +   L ++M +  + PNH++++ILID+    G V+ A 
Sbjct: 444 TLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAF 494



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 125/301 (41%), Gaps = 32/301 (10%)

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCL 336
           Y  + S N  +N Y  N +++     L+F     V   M+K  V  D+ ++N+++ A   
Sbjct: 147 YRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFR 206

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           AG+   A  +   +  + +KG+ K  + TY++++K       W  A +V   M + GV P
Sbjct: 207 AGDVEAAMAL---IDSMVSKGI-KPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAP 262

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA---F 453
           +  +++ LI     AG +E+A+  ++EM      P+    + L+       + D A    
Sbjct: 263 DVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYL 322

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDR---ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
           R  R + L    V       G       +  +  +D+                     F 
Sbjct: 323 REMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVA------------------FG 364

Query: 511 FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             P   TYN L+   C +     A  L+NEM+  G+ P+  ++T LI      GN+E AL
Sbjct: 365 CLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKAL 424

Query: 569 Q 569
           Q
Sbjct: 425 Q 425



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/243 (20%), Positives = 115/243 (47%), Gaps = 10/243 (4%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMK 274
           VP     F   +  + +  ++  AL+ +D        P++    T+ID  G+C  GD  K
Sbjct: 400 VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLID--GMCRQGDLGK 457

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +  +++D+ S+ +  N   ++ L++ +     +         M   G++ ++ +YN ++K
Sbjct: 458 ANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIK 517

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C +GN    Q+   +++H +    +  D+ TY+T++  +        A  + + M + 
Sbjct: 518 GYCRSGNVSKGQQFLPKMRHDK----VMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENE 573

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            V P+ +T++ +I+  +  G +++A  ++++M   G EP+      ++   V A    ++
Sbjct: 574 NVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKS 633

Query: 453 FRL 455
           F+L
Sbjct: 634 FQL 636



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/344 (19%), Positives = 148/344 (43%), Gaps = 25/344 (7%)

Query: 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183
           +R GR D    V + ++  GVAP    D   F +L     R   +GE+E  +   + +  
Sbjct: 240 LRNGRWDKAREVFRAMDACGVAP----DVRSFNMLIGGFCR---AGELEEALRFYKEMRG 292

Query: 184 FRLPVKELDEEFRIVQLCVNKPDVNLAIRYA------CIVPRADILFCNFVREFGKKRDL 237
            R+   ++     ++ L   + +++ A  Y        ++P   +++   +  F +   +
Sbjct: 293 RRV-TPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDG-VIYTMVIGGFCRAGLM 350

Query: 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFN 295
           + ALR  D        P++    T+++  G+C +   S A  +  +++ + V  ++  F 
Sbjct: 351 LEALRVRDEMVAFGCLPDVVTYNTLLN--GLCKERRLSDAEELLNEMKERGVPPDLCTFT 408

Query: 296 SLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           +L++    D  ++  L+ +  +    +  D+ +YN L+   C  G+   A E++ ++   
Sbjct: 409 TLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSR 468

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
           E    +  +  TYS ++    +      A    ++M++ G+ PN +T++S+I     +G 
Sbjct: 469 E----IFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGN 524

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           V +      +M      P+    N L+   V+  +   AF L +
Sbjct: 525 VSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLK 568


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 119/231 (51%), Gaps = 15/231 (6%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTL 289
           G+ +D   A + +D  ++   S N+    T+I   G+C +   + A  + + ++S  +  
Sbjct: 282 GRTKD---AFKVFDEMRERGVSCNIVTYNTLIG--GLCREMKANEANEVMDQMKSDGINP 336

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  +N+L++       L   L + ++++  G+   + +YNIL+   C  G+T  A ++ 
Sbjct: 337 NLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKV- 395

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             VK +E +G+ K    TY+ ++  FA +   + A++++  M   G+TP+  T+S LI+ 
Sbjct: 396 --VKEMEERGI-KPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHG 452

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCN-ILLQACVEACQFDRAFRLFR 457
               G + +A  LF+ M++   EPN    N ++L  C E   + RA RLFR
Sbjct: 453 FCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSY-RALRLFR 502



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 150/361 (41%), Gaps = 51/361 (14%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           E  K  DL+  LR +  S      PN+ I  T+ID C   G+  K++ ++ ++    +  
Sbjct: 178 EIEKSFDLLVELREFGFS------PNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVA 231

Query: 290 NIYVFNSLMNVNAHDL------KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
           N + +  L+    H L      K   E+Y+ MQ+ GV  ++ +YN ++   C  G T  A
Sbjct: 232 NEWTYTVLI----HGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDA 287

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            +++ E++    +GV   ++ TY+T++           A +V + M S G+ PN IT+++
Sbjct: 288 FKVFDEMRE---RGV-SCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNT 343

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-----RS 458
           LI+       + +A+ L  ++   G  P+    NIL+    +      A ++      R 
Sbjct: 344 LIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERG 403

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDK-QSITNTPNFVPNSH-YSSFDKRF------- 509
              SK    +  D    +D   NME   + +S        P+ H YS     F       
Sbjct: 404 IKPSKVTYTILIDTFARSD---NMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMN 460

Query: 510 ------------SFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILI 555
                        F+P    YN ++   C +   YR   L  EM    L PN  S+  +I
Sbjct: 461 EASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMI 520

Query: 556 D 556
           +
Sbjct: 521 E 521



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 136/331 (41%), Gaps = 45/331 (13%)

Query: 282 LRSQNVTLNIYVFNSLMN------VNAHDLKFTLEV----------YKNMQKLGVMADMA 325
           ++SQ++  +IY FN +++       N  +   T  V          + N  K+ V+ D+ 
Sbjct: 105 VQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIKVVLDVY 164

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           S+ I++K CC AG    + ++  E++          +V  Y+T++         + A  +
Sbjct: 165 SFGIVIKGCCEAGEIEKSFDLLVELREFG----FSPNVVIYTTLIDGCCKKGEIEKAKDL 220

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             +M   G+  N  T++ LI+     G+ +Q   ++E+M + G  PN    N ++    +
Sbjct: 221 FFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCK 280

Query: 446 ACQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN--S 500
             +   AF++F   R   +S   V       G    +   E  +      +    PN  +
Sbjct: 281 DGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLIT 340

Query: 501 HYSSFD------------------KRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMR 540
           + +  D                  K     P+  TYNIL+   C   D      ++ EM 
Sbjct: 341 YNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEME 400

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQCR 571
             G+ P+ +++TILID    S N+E A+Q R
Sbjct: 401 ERGIKPSKVTYTILIDTFARSDNMEKAIQLR 431



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 102/225 (45%), Gaps = 21/225 (9%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           FC  VR+ GK   L   L++   S      P++     +  V G C  GD   +  + ++
Sbjct: 348 FCG-VRKLGKALSLCRDLKSRGLS------PSLVTYNIL--VSGFCKKGDTSGAGKVVKE 398

Query: 282 LRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  +   +  L++  A   +++  +++  +M++LG+  D+ +Y++L+   C+ G 
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGR 458

Query: 340 TVLAQEIYGEV--KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
              A  ++  +  K  E   V+      Y+T+V  +        AL++  +M    + PN
Sbjct: 459 MNEASRLFKSMVEKKFEPNEVI------YNTMVLGYCKEGSSYRALRLFREMEEKELPPN 512

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
             ++  +I         ++A  L E+M+ +G  P+    N++ +A
Sbjct: 513 VASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPSDSILNLISRA 557


>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 145/352 (41%), Gaps = 55/352 (15%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           L  + +  F K  D   AL+    ++    S       +II      G  +++ A++E+L
Sbjct: 273 LVNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEAEALFEEL 332

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           R   +      +N+L+   V    LK    +   M+K GV  D  +Y++L+ A   AG  
Sbjct: 333 RQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRW 392

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A+ +  E++     G ++ + F +S ++  + D   WQ   +V ++M S GV P+   
Sbjct: 393 ESARIVLKEME----TGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQF 448

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++ +I+       ++ AM  F+ ML  G EP+    N L+      C+  R         
Sbjct: 449 YNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDC---HCKHGR--------- 496

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
                                             + V    + + ++R    P  TTYNI
Sbjct: 497 ----------------------------------HIVAEEMFEAMERRGCL-PCATTYNI 521

Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           ++ +      +  +K L+ +M++ G+ PN ++ T L+D  G SG    A++C
Sbjct: 522 MINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIEC 573



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 157/389 (40%), Gaps = 62/389 (15%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +R + I PR    +   ++ + K   L  A       +K   SP+ +    +ID     G
Sbjct: 332 LRQSGIKPRTKA-YNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAG 390

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
            +  +R + +++ + +V  N +VF+ L+    +  + + T +V K M+ +GV  D   YN
Sbjct: 391 RWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYN 450

Query: 329 I-----------------------------------LLKACCLAGNTVLAQEIYGEVKHL 353
           +                                   L+   C  G  ++A+E++   + +
Sbjct: 451 VVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF---EAM 507

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
           E +G L     TY+ ++  + D + W    ++   M S G+ PN +T ++L++    +G 
Sbjct: 508 ERRGCLPCAT-TYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGR 566

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDRAFRLFRSWTLSKTQVALGE 470
              A+   EEM   G +P+S   N L+ A  +   + Q   AFR+  S  L  + +AL  
Sbjct: 567 FNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNS 626

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTD 528
             +   +     + +D ++               + K    KP   TY  LMKA      
Sbjct: 627 LINAFGE-----DRRDAEAFA----------VLQYMKENGVKPDVVTYTTLMKALIRVDK 671

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDA 557
           + +V  +  EM   G  P+  + ++L  A
Sbjct: 672 FQKVPGVYEEMIMSGCKPDRKARSMLRSA 700



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 145/320 (45%), Gaps = 48/320 (15%)

Query: 274 KSRAIYED-LRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNIL 330
           +S  +YE  L SQ  TL    +N+L+   A  +D++  L +   M++ G  +D  +Y+++
Sbjct: 181 RSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLISRMRQDGYQSDFVNYSLV 240

Query: 331 LKAC--CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           +++   C   ++V+ Q +Y E++    +  L+LDV   + I+  FA +     AL++   
Sbjct: 241 IQSLTRCNKIDSVMLQRLYKEIE----RDKLELDVQLVNDIIMGFAKSGDPSRALQLLGM 296

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
             + G++  T T  S+I+A AN+G   +A  LFEE+ Q+G +P ++  N LL+  V+   
Sbjct: 297 AQATGLSAKTATLVSIISALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGP 356

Query: 449 FDRAFRLF-----RSWTLSKTQVALGEDYDGNTDR-------ISNMEHKDKQSITNTPN- 495
              A  +      R  +  +   +L  D   N  R       +  ME  D Q     PN 
Sbjct: 357 LKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQ-----PNS 411

Query: 496 FVPNSHYSSFDKR---------------FSFKPTTTTYNILM----KACCTDYYRVKALM 536
           FV +   + +  R                  KP    YN+++    K  C D+       
Sbjct: 412 FVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH--AMTTF 469

Query: 537 NEMRTVGLSPNHISWTILID 556
           + M + G+ P+ ++W  LID
Sbjct: 470 DRMLSEGIEPDRVTWNTLID 489


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 146/307 (47%), Gaps = 27/307 (8%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVNAHDLKF-TLEVYKNMQKLGVMA 322
           G C  GD  ++ A+++D   + +  +I ++N+L+  ++   L    L++   M + G + 
Sbjct: 339 GFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLP 398

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           ++ +YN+++   C  G    A  +   V    AKG    D+FTY+T++  +        A
Sbjct: 399 NIWTYNLVINGLCKMGCVSDASHL---VDDAIAKGCPP-DIFTYNTLIDGYCKQLKLDSA 454

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            ++   M S G+TP+ IT+++L+N    AG  E+ M +F+ M + GC PN    NI++ +
Sbjct: 455 TEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDS 514

Query: 443 CVEACQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
             +A + + A  L    +S  L    V+ G  + G   +I +++   +            
Sbjct: 515 LCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFC-KIGDIDGAYQL----------- 562

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
             +   +K++    TT TYNI++ A         A  L + M+  G  P++ ++ ++ID 
Sbjct: 563 --FRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDG 620

Query: 558 CGGSGNV 564
               GN+
Sbjct: 621 FCKMGNI 627



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 120/298 (40%), Gaps = 32/298 (10%)

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           + S N  +NI V     N  AH      +VY  M+  GV +D+ +Y I +K+ C      
Sbjct: 111 VHSHNAIMNILVEFGYHN-QAH------KVYMRMRDRGVQSDVYTYTIRIKSFCKTARPY 163

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  +   +  L        +   Y T+V    D+     A ++ ++ML+  + P+ + +
Sbjct: 164 AALRLLRNMPELGCDS----NAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAF 219

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           + L++     GLV ++  L  ++L+ G  PN    NI +Q        DRA R       
Sbjct: 220 NKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVR------- 272

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNT-------PNFVPNSHYSSFDKRF-SFKP 513
             ++V   E+Y     ++ N   +      N+          V +++    D  F  FKP
Sbjct: 273 -NSRVVEAEEY---LRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKP 328

Query: 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              TY  L+   C   D  R  A+  +    GL P+ + +  LI      G +  ALQ
Sbjct: 329 DEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQ 386



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 46/213 (21%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P+++   T+ID  G C       A  +   + SQ +T ++  +N+L+N    A   +  +
Sbjct: 433 PDIFTYNTLID--GYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVM 490

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF----- 364
           E++K M++ G   ++ +YNI++ + C A     A ++ GE+K   +KG LK DV      
Sbjct: 491 EIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMK---SKG-LKPDVVSFGTL 546

Query: 365 -------------------------------TYSTIVKVFADAKWWQMALKVKEDMLSAG 393
                                          TY+ IV  F++     MA+K+   M ++G
Sbjct: 547 FTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSG 606

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
             P+  T+  +I+     G + Q      E ++
Sbjct: 607 CDPDNYTYRVVIDGFCKMGNITQGYKFLLENME 639


>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
          Length = 481

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 153/333 (45%), Gaps = 24/333 (7%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           FC  +R++ + + +  A+ A++  +K+   PN+     ++       +  K++ ++E++R
Sbjct: 135 FCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMR 194

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            +  T +   ++ L+       +L    EV++ M   G   D+ +Y+I++   C AG   
Sbjct: 195 DR-FTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRV- 252

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
              E  G V+ ++   + K   F YS +V  +      + A+    +M  +G+  +   +
Sbjct: 253 --DEALGIVRSMDP-SICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVF 309

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           +SLI A   A  ++    + +EM   G  PNS+ CNI+L+  +E  + D AF +FR    
Sbjct: 310 NSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFR---- 365

Query: 462 SKTQVALGEDYDGNTDRISNM-EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
            K       D D  T  I    E K+ ++         +  +    K+  F P+  T+++
Sbjct: 366 -KMIKVCEPDADTYTMVIKMFCEKKEMET--------ADKVWKYMRKKGVF-PSMHTFSV 415

Query: 521 LMKACCTDYYRVKA--LMNEMRTVGLSPNHISW 551
           L+   C +    KA  L+ EM  +G+ P+ +++
Sbjct: 416 LINGLCEERTTQKACVLLEEMIEMGIRPSGVTF 448


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 141/310 (45%), Gaps = 33/310 (10%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMA 322
           G+C  GD  ++  ++ + +++++  ++ V+NSL+        +   L+V   M + G   
Sbjct: 263 GLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHP 322

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+ +YNI++   C  GN   A  +  +      KG L  DVFT++T++  +        A
Sbjct: 323 DIWTYNIVINGLCKMGNISDAAVVMNDAI---VKGYLP-DVFTFNTMIDGYCKRLKLDSA 378

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           L++ E M   G+ P+ IT++S++N    AG  ++    FEEM+  GC PN+   NIL++ 
Sbjct: 379 LQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIEN 438

Query: 443 CVEACQFDRA----FRLFRSW----TLSKTQVALG----EDYDGNTDRISNMEHKDKQSI 490
             +  Q + A     R+ +      T+S   +  G     D DG       ++ K   + 
Sbjct: 439 FCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSAT 498

Query: 491 TNTPNFVPNSHYSSFDKRFS-----------FKPTTTTYNILMKACC--TDYYRVKALMN 537
            +T N +  ++ S  + + +           +KP   TY +L+   C   +  R    + 
Sbjct: 499 ADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLA 558

Query: 538 EMRTVGLSPN 547
           EM + G  P+
Sbjct: 559 EMVSKGFVPS 568



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 150/393 (38%), Gaps = 38/393 (9%)

Query: 196 RIVQLCV-NKPDVNLAIRYACIVPRADI---LFCNFVREFGKKRDLVSALRAYDASKKHL 251
           RI   C+  +P V L +  +      D+    +C  VR          A   +D   +  
Sbjct: 51  RIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRD 110

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
             P++     ++      GD M+S A+   +  + +++N +  N  +        L+  +
Sbjct: 111 VFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAV 170

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            + ++M    +  D+ +YN L++  C        QE    ++ +  +G +  D FTY+TI
Sbjct: 171 ALVESMDAY-IAPDVVTYNTLMRGLCKDSKV---QEAAQYLRRMMNQGCIP-DDFTYNTI 225

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +      Q A ++ +D +  G  P+ +T+ SLIN     G VE+A+ LF E      
Sbjct: 226 IDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDL 285

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH-KDKQ 488
           +P+    N L++          A ++            +   Y+   + +  M +  D  
Sbjct: 286 KPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWT-YNIVINGLCKMGNISDAA 344

Query: 489 SITN---TPNFVP-----NSHYSSFDKR---------------FSFKPTTTTYNILMKAC 525
            + N      ++P     N+    + KR               +   P   TYN ++   
Sbjct: 345 VVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGL 404

Query: 526 CT--DYYRVKALMNEMRTVGLSPNHISWTILID 556
           C       V     EM   G  PN I++ ILI+
Sbjct: 405 CKAGKAKEVNETFEEMILKGCRPNAITYNILIE 437



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 120/302 (39%), Gaps = 32/302 (10%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           + ++L+N   HD     +VY  M   GV  D  ++ + +K+ C+ G   +A  +   ++ 
Sbjct: 16  IMDALVNTAYHDQAH--KVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRL---LRS 70

Query: 353 LEAKGVLKLDVFTYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
           L  +G   +    Y T+V+ ++A    +  A  + ++ML   V P+  T++++++A    
Sbjct: 71  LPERGC-DVKPLAYCTVVRGLYAHGHGYD-ARHLFDEMLRRDVFPDVATFNNVLHALCQK 128

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-------TLSKT 464
           G + ++  L  ++L+ G   N   CNI ++   E  + + A  L  S         ++  
Sbjct: 129 GDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDVVTYN 188

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR---------------F 509
            +  G   D      +    +         +F  N+    + KR                
Sbjct: 189 TLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFK 248

Query: 510 SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            F P   TY  L+   C   D  R   L NE +   L P+ + +  L+      G +  A
Sbjct: 249 GFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHA 308

Query: 568 LQ 569
           LQ
Sbjct: 309 LQ 310


>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 156/365 (42%), Gaps = 59/365 (16%)

Query: 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266
           +N   RY+  V   +++  N +R   KK DL   L  +D  ++   SP+ Y   T+I   
Sbjct: 124 INEVARYSPSVFAYNVVLRNVLR--AKKWDLAHGL--FDEMRQRALSPDRYTYSTLITSF 179

Query: 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADM 324
           G  G + +S    + +    V+ ++ ++++L+ ++    D    + ++  +++ G+  D+
Sbjct: 180 GKAGMFDESLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGITPDL 239

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            +YN ++      G   L +E    V  +   GVL  D  +YST++ V+ + + +  AL 
Sbjct: 240 VAYNSMINVF---GKARLFREARMLVHEMREVGVLP-DTVSYSTLLSVYVENEKFVEALS 295

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           V  +M  A  + + +T + +I+      +V++A  LF  M + G EPN    N LL+   
Sbjct: 296 VFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYG 355

Query: 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
           EA  F  A  LFR                        M+ K+                  
Sbjct: 356 EAELFGEAIHLFRL-----------------------MQRKE------------------ 374

Query: 505 FDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSG 562
                  +    TYN ++K         KA  L+ EM+  G+ PN I+++ +I   G +G
Sbjct: 375 ------IEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAG 428

Query: 563 NVEGA 567
            ++ A
Sbjct: 429 KLDRA 433



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 150/315 (47%), Gaps = 33/315 (10%)

Query: 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN 208
           +FD S F L + E  R+  SG++ ++  L+E+                  +LC     ++
Sbjct: 184 MFDESLFWLQQMEQDRV--SGDLVLYSNLIELSR----------------KLCDYSKAIS 225

Query: 209 LAIRY--ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266
           + +R   + I P   + + + +  FGK R    A       ++    P+     T++ V 
Sbjct: 226 IFMRLKRSGITPDL-VAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYSTLLSVY 284

Query: 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-DL-KFTLEVYKNMQKLGVMADM 324
                ++++ +++ ++   N +L++   N +++V    D+ K    ++ +M+K+G+  ++
Sbjct: 285 VENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNV 344

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHL---EAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            SYN LLK    A       E++GE  HL     +  ++ +V TY+T++K++  +   + 
Sbjct: 345 VSYNTLLKVYGEA-------ELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEK 397

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A  + ++M   G+ PN IT+S++I+    AG +++A  LF+++  +G E +      ++ 
Sbjct: 398 ATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIV 457

Query: 442 ACVEACQFDRAFRLF 456
           A   A     A RL 
Sbjct: 458 AYERAGLVAHAKRLL 472



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 98/208 (47%), Gaps = 6/208 (2%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
            V AL  +    +   S ++  C  +IDV G      ++  ++  +R   +  N+  +N+
Sbjct: 290 FVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNT 349

Query: 297 LMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           L+ V      F   + +++ MQ+  +  ++ +YN ++K   + G ++  ++    V+ ++
Sbjct: 350 LLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIK---IYGKSLEHEKATNLVQEMQ 406

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            +G+ + +  TYSTI+ ++  A     A  + + + S+GV  + + + ++I A   AGLV
Sbjct: 407 KRGI-EPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLV 465

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQA 442
             A  L  ++      P      IL +A
Sbjct: 466 AHAKRLLHDLKCPDIIPRDTAIKILARA 493



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 117/275 (42%), Gaps = 46/275 (16%)

Query: 221 DILFCNFVREFGKKRDLV-SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           D++ CN + +   + D+V  A R + + +K    PN+    T++ V G    + ++  ++
Sbjct: 308 DLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLF 367

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLA 337
             ++ + +  N+  +N+++ +    L+      + + MQK G+  +  +Y+ ++     A
Sbjct: 368 RLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKA 427

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A  ++   + L + GV ++D   Y T++  +  A     A ++  D+      P+
Sbjct: 428 GKLDRAAMLF---QKLRSSGV-EIDQVLYQTMIVAYERAGLVAHAKRLLHDL----KCPD 479

Query: 398 TITWSSLINACANAGLVEQA-----------------------------------MHLFE 422
            I   + I   A AG +E+A                                   + +FE
Sbjct: 480 IIPRDTAIKILARAGRIEEATWVFRQAFDAGEVKDISVFRCMIELFSRNKRPANVVEVFE 539

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           +M  AG  P+S    ++L A  +  +F++A  ++R
Sbjct: 540 KMRGAGYFPDSDVIALVLNAYGKLREFEKADAVYR 574


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 190/463 (41%), Gaps = 59/463 (12%)

Query: 151 DGSGFKL-LKNEC---QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD 206
           D  GF+  L++ C   + L+ SG V     L+  L + +LPV   D + R +++     D
Sbjct: 171 DSCGFRFTLRSYCVLMRSLIVSGFVSPARLLLIRLIDRKLPVLFGDPKNRHIEIASAMAD 230

Query: 207 VNLAIRYACIVPRADIL---FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263
           +N        V   D+L   +C   R  G  R+ +   R + A+K     P +  C  ++
Sbjct: 231 LNEVGESGVAVAAVDLLIHVYCTQFRNVGF-RNAIGVFR-FLANKGVF--PTVKTCTFLL 286

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVM 321
                  +  KS  ++E +R Q V+ ++Y+F++ +N       ++  ++++ +M+KLGV 
Sbjct: 287 SSLVKANELEKSYWVFETMR-QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVS 345

Query: 322 ADMASYNILLKACCLAGN-----------------------TVLAQEIYGEVKHLEAKGV 358
            ++ +YN L+   C  GN                       +VL   +    K  EA  V
Sbjct: 346 PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSV 405

Query: 359 LKLDV---FT-----YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           LK  +   FT     Y+T++  +        AL+++ DM+S G+ PN++T +S+I     
Sbjct: 406 LKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCK 465

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G +EQA  + EEML  G   N      ++       +F+ A R  R   L   +   G 
Sbjct: 466 IGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGL 525

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
                       +H D   +           +   +K F     TT  N L+   C    
Sbjct: 526 LTTLVGGLCKEGKHSDAVEL----------WFRLLEKGFGANLVTT--NALIHGLCKTGN 573

Query: 531 RVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
             +A  L+ +M   G   + I++  LI  C   G VE   + R
Sbjct: 574 MQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLR 616



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 155/368 (42%), Gaps = 39/368 (10%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAI 278
           ++++   +  + K  +L  ALR          +PN     +II   G C  G   ++  I
Sbjct: 418 EVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQ--GFCKIGQMEQAECI 475

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCL 336
            E++ S+  ++N   F ++++    + +F   L   + M    +  +      L+   C 
Sbjct: 476 LEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCK 535

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G    A E++   + LE KG    ++ T + ++         Q A+++ + ML  G   
Sbjct: 536 EGKHSDAVELW--FRLLE-KG-FGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVL 591

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           + IT+++LI+ C   G VE+   L  EM++ G EP++   N+L+       + D A  L+
Sbjct: 592 DKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLW 651

Query: 457 ---RSWTLSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPNS-HYSSFDKRF- 509
              +S  L       G   DG    D+I   E    + +T   N   NS  Y++  + + 
Sbjct: 652 NECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ--NLELNSVVYNTLIRAYC 709

Query: 510 -------SFK-----------PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549
                  +FK           PTT TY+ L+   C        K L++EMR  GL PN +
Sbjct: 710 RNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVV 769

Query: 550 SWTILIDA 557
            +T LI  
Sbjct: 770 CYTALIGG 777



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 119/299 (39%), Gaps = 47/299 (15%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGV 320
           + G+C  G+  ++  + + +  +   L+   +N+L++    + K     ++   M K G+
Sbjct: 565 IHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGI 624

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGE------VKHLEAKGV---------------- 358
             D  +YN+L+   C  G    A  ++ E      V ++   GV                
Sbjct: 625 EPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEK 684

Query: 359 ---------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
                    L+L+   Y+T+++ +        A K+ +DM S G+ P T T+SSLI+   
Sbjct: 685 LFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMC 744

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
           N G +E A  L +EM + G  PN  C   L+    +  Q D+   + +  +         
Sbjct: 745 NIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMS--------- 795

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
             YD + ++I+     D  S +          +    K     P T TYN+L    C +
Sbjct: 796 -SYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGK--GIVPDTVTYNVLTNGFCKE 851



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/156 (19%), Positives = 76/156 (48%), Gaps = 6/156 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G+ +++  +++D+RS+ +      ++SL++   N   ++    +   M+K G++ ++  Y
Sbjct: 712 GNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCY 771

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             L+   C  G       +  E+   +    +  +  TY+ ++  ++ +   + A K+  
Sbjct: 772 TALIGGYCKLGQMDKVVNVLQEMSSYD----IHPNKITYTVMIDGYSKSGDMKTAAKLLH 827

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
           +M+  G+ P+T+T++ L N     G +E+   L E+
Sbjct: 828 EMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAED 863


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 131/314 (41%), Gaps = 20/314 (6%)

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKN 314
           + C T++  CG  G   ++R  +  L+S+        +N+L++V      F+  L V   
Sbjct: 294 FTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSE 353

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M++     D  +YN ++ A   AG     +E    +  + +KG++  +  TY+TI+  + 
Sbjct: 354 MEENNCPPDAVTYNEVVAAYVRAG---FHEEGAVVIDAMASKGIMP-NAVTYTTIINAYG 409

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                  AL++ + M+  G  PN  T+++++       L E+ M +   M   GC PN  
Sbjct: 410 RVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHI 469

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             N +L  C +        ++FR             D D     IS            + 
Sbjct: 470 TWNTMLAMCGKKGMHKYVNQVFREM----KNCGFEPDRDTFNTLIS------AYGRCGSN 519

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWT 552
           N     H       FS  P   TYN L+ A     D+   ++++ +MR  G  P+  S++
Sbjct: 520 NDAAKMHEEMIKAGFS--PCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYS 577

Query: 553 ILIDACGGSGNVEG 566
           +++ +    GNV+G
Sbjct: 578 LMVHSYAKGGNVKG 591



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 37/220 (16%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K R L    RA+ A +KH   P++ +C                          N  L+I+
Sbjct: 620 KCRSLTGMERAFQALQKHGYKPDLVLC--------------------------NSMLSIF 653

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
             N++ +  AH      E+ + +   G+  D+ ++N L+      G+   A+E+   ++ 
Sbjct: 654 AKNNMYD-RAH------EMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEV---LRM 703

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           L+  G  K D+ +Y+T++K F      Q  +++  +M S GV P   T+++ I+  A  G
Sbjct: 704 LQTSGG-KPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQG 762

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           +  +   +   M+   C PN     I+     +A ++D A
Sbjct: 763 MFTEINDVISYMIVHNCRPNELTYKIVADGYCKARRYDEA 802



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 104/250 (41%), Gaps = 54/250 (21%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AKWWQM 381
           D+ +Y  +L A    G    A EI+   + +   G L   + TY+ ++ V+    + W  
Sbjct: 221 DVRAYTTILHAYSRTGKYHRAIEIF---ERMNESG-LSPSLVTYNVMLDVYGKMGRSWDK 276

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
            L++ ++M S G+  +  T S++++AC   GL+++A   F  +   G +P +   N LL 
Sbjct: 277 ILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLH 336

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              +A  F  A  +                       +S ME        N P       
Sbjct: 337 VFGKAGIFSEALSV-----------------------LSEMEE------NNCP------- 360

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACG 559
                      P   TYN ++ A     +  +   +++ M + G+ PN +++T +I+A G
Sbjct: 361 -----------PDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYG 409

Query: 560 GSGNVEGALQ 569
             G+++ AL+
Sbjct: 410 RVGDIDKALE 419



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/279 (17%), Positives = 113/279 (40%), Gaps = 42/279 (15%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           I+P A + +   +  +G+  D+  AL  +D   +    PN+     ++ + G      + 
Sbjct: 394 IMPNA-VTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEM 452

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKA 333
             I   ++    + N   +N+++ +       K+  +V++ M+  G   D  ++N L+ A
Sbjct: 453 MKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISA 512

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
               G+   A +++ E+     K      + TY+ ++   A    W+ A  V  DM + G
Sbjct: 513 YGRCGSNNDAAKMHEEM----IKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKG 568

Query: 394 VTPNTITWSSLINACANAG------LVEQAMH---------------------------- 419
             P+  ++S ++++ A  G      ++E++++                            
Sbjct: 569 FRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGME 628

Query: 420 -LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             F+ + + G +P+   CN +L    +   +DRA  + R
Sbjct: 629 RAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLR 667


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 140/349 (40%), Gaps = 24/349 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           F   V    KK    SAL   +        PN+     +ID  G C  G   ++  I  +
Sbjct: 385 FSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILID--GFCKKGQLEEAGLILRE 442

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + ++  +LN   +N+L++      K    L+++  M   G   D+ ++N L+   C    
Sbjct: 443 MLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDE 502

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  +Y   + +  +GV+   V T++T++  F      Q ALK+  DML  G   + I
Sbjct: 503 MEDALALY---RDMVLEGVIANSV-TFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEI 558

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++ LI A    G VE+ + LFEEM++ G  P+   CNIL+     A +   A    R  
Sbjct: 559 TYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDM 618

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                      D       I+ +  + +  I    N                +P + TYN
Sbjct: 619 ----IHRGFSPDIVTYNSLINGLCKRGR--IQEALNLFEKLQAE------GIQPDSITYN 666

Query: 520 ILMKACCTDYYRVKALMNEMRTV--GLSPNHISWTILIDACGGSGNVEG 566
            L+   C +     A     R V  G  PN ++W IL+   G   N EG
Sbjct: 667 TLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGKQSNSEG 715



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 127/286 (44%), Gaps = 23/286 (8%)

Query: 290 NIYVFNSLMNVNAHDLKF---TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           N+  FN+L+N    + +    T  VY  M   G + D+ +++ L+   C  G    A E+
Sbjct: 345 NVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALEL 404

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
              V  ++AKG  K ++ TY+ ++  F      + A  +  +ML+ G + NT+ +++LI+
Sbjct: 405 ---VNDMDAKGC-KPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALIS 460

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           A    G + +A+ +F EM   GC+P+    N L+       + + A  L+R   L   + 
Sbjct: 461 ALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVL---EG 517

Query: 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP-TTTTYNILMKAC 525
            +      NT   + +   + Q      N          D  F   P    TYN L+KA 
Sbjct: 518 VIANSVTFNTLIHAFLRRGEIQEALKLVN----------DMLFRGCPLDEITYNGLIKAL 567

Query: 526 CTDYYRVK--ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           C      K   L  EM   GL+P+ I+  ILI+    +G V  AL+
Sbjct: 568 CKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALE 613



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 119/295 (40%), Gaps = 42/295 (14%)

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            RS NV L++ V  +  +V ++       V+ +M   GV  +  ++ +++KA C+     
Sbjct: 175 FRSYNVVLDVLVVGNCPSVASN-------VFYDMLSKGVSPNDYTFGLVMKALCMVNEVD 227

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  +   ++ +   G +  +   Y T++   +       ALK+ E+M   G  P+  T+
Sbjct: 228 NACLL---LRDMTKHGCVP-NSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTF 283

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           +++I        V +   L + M+  G  PN      L+    + C+ D A  L     L
Sbjct: 284 NTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQAL-----L 338

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS-----FDKRFS--FKPT 514
           SK                 N+ H +    T    FV N   +      +DK  +  + P 
Sbjct: 339 SKVPGP-------------NVVHFN----TLVNGFVRNGRLNEATAFVYDKMINNGYVPD 381

Query: 515 TTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             T++ L+   C    +     L+N+M   G  PN  ++TILID     G +E A
Sbjct: 382 VFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEA 436


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 190/463 (41%), Gaps = 59/463 (12%)

Query: 151 DGSGFKL-LKNEC---QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD 206
           D  GF+  L++ C   + L+ SG V     L+  L + +LPV   D + R +++     D
Sbjct: 104 DSCGFRFTLRSYCVLMRSLIVSGFVSPARLLLIRLIDRKLPVLFGDPKNRHIEIASAMAD 163

Query: 207 VNLAIRYACIVPRADIL---FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263
           +N        V   D+L   +C   R  G  R+ +   R + A+K     P +  C  ++
Sbjct: 164 LNEVGESGVAVAAVDLLIHVYCTQFRNVGF-RNAIGVFR-FLANKGVF--PTVKTCTFLL 219

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVM 321
                  +  KS  ++E +R Q V+ ++Y+F++ +N       ++  ++++ +M+KLGV 
Sbjct: 220 SSLVKANELEKSYWVFETMR-QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVS 278

Query: 322 ADMASYNILLKACCLAGN-----------------------TVLAQEIYGEVKHLEAKGV 358
            ++ +YN L+   C  GN                       +VL   +    K  EA  V
Sbjct: 279 PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSV 338

Query: 359 LKLDV---FT-----YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           LK  +   FT     Y+T++  +        AL+++ DM+S G+ PN++T +S+I     
Sbjct: 339 LKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCK 398

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G +EQA  + EEML  G   N      ++       +F+ A R  R   L   +   G 
Sbjct: 399 IGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGL 458

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
                       +H D   +           +   +K F     TT  N L+   C    
Sbjct: 459 LTTLVGGLCKEGKHSDAVEL----------WFRLLEKGFGANLVTT--NALIHGLCKTGN 506

Query: 531 RVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
             +A  L+ +M   G   + I++  LI  C   G VE   + R
Sbjct: 507 MQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLR 549



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 153/368 (41%), Gaps = 39/368 (10%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAI 278
           ++++   +  + K  +L  ALR          +PN     +II   G C  G   ++  I
Sbjct: 351 EVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQ--GFCKIGQMEQAECI 408

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCL 336
            E++ S+  ++N   F ++++    + +F   L   + M    +  +      L+   C 
Sbjct: 409 LEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCK 468

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G    A E++     L  KG    ++ T + ++         Q A+++ + ML  G   
Sbjct: 469 EGKHSDAVELW---FRLLEKG-FGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVL 524

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           + IT+++LI+ C   G VE+   L  EM++ G EP++   N+L+       + D A  L+
Sbjct: 525 DKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLW 584

Query: 457 ---RSWTLSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPNS-HYSSFDKRF- 509
              +S  L       G   DG    D+I   E    + +T   N   NS  Y++  + + 
Sbjct: 585 NECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ--NLELNSVVYNTLIRAYC 642

Query: 510 -------SFK-----------PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549
                  +FK           PTT TY+ L+   C        K L++EMR  GL PN +
Sbjct: 643 RNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVV 702

Query: 550 SWTILIDA 557
            +T LI  
Sbjct: 703 CYTALIGG 710



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 131/328 (39%), Gaps = 49/328 (14%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMA 322
           G+C  G+  ++  + + +  +   L+   +N+L++    + K     ++   M K G+  
Sbjct: 500 GLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEP 559

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGE------VKHLEAKGV------------------ 358
           D  +YN+L+   C  G    A  ++ E      V ++   GV                  
Sbjct: 560 DTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLF 619

Query: 359 -------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
                  L+L+   Y+T+++ +        A K+ +DM S G+ P T T+SSLI+   N 
Sbjct: 620 TELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNI 679

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
           G +E A  L +EM + G  PN  C   L+    +  Q D+   + +  +           
Sbjct: 680 GRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMS----------S 729

Query: 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR 531
           YD + ++I+     D  S +          +    K     P T TYN+L    C +   
Sbjct: 730 YDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGK--GIVPDTVTYNVLTNGFCKEGKI 787

Query: 532 VKA--LMNEMRTVGLSPNHISWTILIDA 557
            +   + + M   GL  + I++T L+  
Sbjct: 788 EEGFKICDYMSQEGLPLDEITYTTLVHG 815


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 133/307 (43%), Gaps = 28/307 (9%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE----VYKNMQKLGVMADMA 325
           GD   +R+++  ++    T +I  +NSL  ++ H     L+    +++ M+      D+ 
Sbjct: 269 GDLEMARSLFTQMKEAGFTPDIVTYNSL--IDGHGKLGLLDECICIFEQMKDADCDPDVI 326

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +YN L+   C       A E   E+K   A G LK +V TYST +  F      Q A+K 
Sbjct: 327 TYNALINCFCKFERMPKAFEFLHEMK---ANG-LKPNVVTYSTFIDAFCKEGMLQEAIKF 382

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             DM    +TPN  T++SLI+A   AG + +A+ L EE+LQAG + N      LL    E
Sbjct: 383 FVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCE 442

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK--DKQSITNTPNFVPNSHYS 503
             +   A  +FR+         L      N +  + + H     + +    + +      
Sbjct: 443 EGRMKEAEEVFRA--------MLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEM--- 491

Query: 504 SFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561
              K    KP    Y  ++   C +      K L+ E++  G++ N + +T L+DA   S
Sbjct: 492 ---KEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKS 548

Query: 562 GNVEGAL 568
           G    AL
Sbjct: 549 GQATEAL 555



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 146/357 (40%), Gaps = 37/357 (10%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YED 281
           FC F R       +  A       K +   PN+    T ID    C + M   AI  + D
Sbjct: 335 FCKFER-------MPKAFEFLHEMKANGLKPNVVTYSTFID--AFCKEGMLQEAIKFFVD 385

Query: 282 LRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R   +T N + + SL++ N  A +L   L++ + + + G+  ++ +Y  LL   C  G 
Sbjct: 386 MRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGR 445

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+E++   + +   GV   +  TY+ +V  F  AK  + A  + ++M    + P+ +
Sbjct: 446 MKEAEEVF---RAMLNAGVAP-NQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLL 501

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            + +++    N   +E+A  L  E+ ++G   N+     L+ A  ++ Q   A  L    
Sbjct: 502 LYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEM 561

Query: 460 T---LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
               L  T+V      DG               +  +       H+         +P   
Sbjct: 562 LDLGLIATEVTYCALIDG---------------LCKSGLVQEAMHHFGRMSEIGLQPNVA 606

Query: 517 TYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            Y  L+   C +  +   K L +EM   G+ P+ I++T LID     GN++ AL  R
Sbjct: 607 VYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLR 663



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 111/262 (42%), Gaps = 53/262 (20%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E +  M+K  V     S N LL      G   L+++ +   K + A G+ K  VFTY+ +
Sbjct: 206 ECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFF---KDMGAAGI-KRSVFTYNIM 261

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         +MA  +   M  AG TP+ +T++SLI+     GL+++ + +FE+M  A C
Sbjct: 262 IDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADC 321

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +P+    N L+      C+F+R  + F                           H+ K +
Sbjct: 322 DPDVITYNALINC---FCKFERMPKAFE------------------------FLHEMKAN 354

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPN 547
                                 KP   TY+  + A C +    +A+    +MR V L+PN
Sbjct: 355 --------------------GLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPN 394

Query: 548 HISWTILIDACGGSGNVEGALQ 569
             ++T LIDA   +GN+  AL+
Sbjct: 395 EFTYTSLIDANCKAGNLAEALK 416



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 103/518 (19%), Positives = 205/518 (39%), Gaps = 93/518 (17%)

Query: 114 EMVASGIVKSI-----------REGRIDCVVGVLKKLNELGVAPL-----ELFDGSGFKL 157
           +M A+GI +S+           +EG ++    +  ++ E G  P       L DG G   
Sbjct: 245 DMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLG 304

Query: 158 LKNEC----QRLLDSG---EVEMFVGLMEVLEEF-RLP-VKELDEEFRIVQLCVNKPDVN 208
           L +EC    +++ D+    +V  +  L+    +F R+P   E   E +   L   KP+V 
Sbjct: 305 LLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGL---KPNV- 360

Query: 209 LAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268
                        + +  F+  F K+  L  A++ +   ++   +PN +   ++ID    
Sbjct: 361 -------------VTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCK 407

Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----------------------------- 299
            G+  ++  + E++    + LN+  + +L++                             
Sbjct: 408 AGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQET 467

Query: 300 --------VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
                   + A ++++  ++ K M++  +  D+  Y  +L   C       A+ + GE+K
Sbjct: 468 YTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIK 527

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
               +  +  +   Y+T++  +  +     AL + E+ML  G+    +T+ +LI+    +
Sbjct: 528 ----ESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKS 583

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
           GLV++AMH F  M + G +PN      L+    +   F+ A +LF    L K  +     
Sbjct: 584 GLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDE-MLDKGMMPDKIA 642

Query: 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR 531
           Y    D   NM+H + Q   N  +          +          T  I   +      +
Sbjct: 643 YTALID--GNMKHGNLQEALNLRD-------RMIEIGMELDLHAYTALIWGLSHSGQVQK 693

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            + L++EM   G+ P+ + +  LI      G V+ AL+
Sbjct: 694 ARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALE 731


>gi|302781402|ref|XP_002972475.1| hypothetical protein SELMODRAFT_97561 [Selaginella moellendorffii]
 gi|300159942|gb|EFJ26561.1| hypothetical protein SELMODRAFT_97561 [Selaginella moellendorffii]
          Length = 406

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 138/286 (48%), Gaps = 36/286 (12%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++++M+K  V  +  +YN L+ + C  G    A+  +  +K          D FTY+ ++
Sbjct: 70  IFESMRKNLVRPNTQTYNFLISSLCSLGKMAEARWRFSYMKK-----YCDPDEFTYAALI 124

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F      ++ L++ E+ML+ G+ PN   ++ +++A + +G  EQ + LFE M++  C 
Sbjct: 125 NGFCKCMDTEVTLELLEEMLARGLRPNLALFNMMMDAHSRSGKHEQVIALFERMVEHECR 184

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI--SNMEHKDKQ 488
           P+ +   +L++A   + + D AF   + +  S+    LG  Y+   +R+  +N  H   +
Sbjct: 185 PDPKSYRVLVEAFAVSGRIDEAFGFVQRYADSENAPHLGA-YNTLMNRLGKANKAHAALE 243

Query: 489 ---SITNTPNFVP------------------NSHYSSFDK-RFSFKPTTTTYNILM---- 522
               I + PN+ P                  +  +S + K R  F+P   +YN L+    
Sbjct: 244 IFYKIKDRPNYKPDLVTYNVLIDLLGKVGKIDECWSCYQKMRLHFQPDIFSYNTLLGRLG 303

Query: 523 KACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           +A   D +   +++++M   G+  + I++ IL++    +GN++ AL
Sbjct: 304 RAGRVDLF--ASVLDDMSRDGVQQDRITYAILVEGYARAGNLDVAL 347



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 91/208 (43%), Gaps = 10/208 (4%)

Query: 249 KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLK 306
           +H   P+    R +++   + G   ++    +         ++  +N+LMN    A+   
Sbjct: 180 EHECRPDPKSYRVLVEAFAVSGRIDEAFGFVQRYADSENAPHLGAYNTLMNRLGKANKAH 239

Query: 307 FTLEV-YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK-HLEAKGVLKLDVF 364
             LE+ YK   +     D+ +YN+L+      G        Y +++ H +       D+F
Sbjct: 240 AALEIFYKIKDRPNYKPDLVTYNVLIDLLGKVGKIDECWSCYQKMRLHFQP------DIF 293

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++     A    +   V +DM   GV  + IT++ L+   A AG ++ A+   EEM
Sbjct: 294 SYNTLLGRLGRAGRVDLFASVLDDMSRDGVQQDRITYAILVEGYARAGNLDVALAYLEEM 353

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRA 452
             +G  P      +L+ + ++A +F  A
Sbjct: 354 KSSGFSPTPSALEVLVNSLLKAGRFGAA 381



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 5/131 (3%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y+ M +L    D+ SYN LL     AG      +++  V    ++  ++ D  TY+ +V+
Sbjct: 281 YQKM-RLHFQPDIFSYNTLLGRLGRAGRV----DLFASVLDDMSRDGVQQDRITYAILVE 335

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +A A    +AL   E+M S+G +P       L+N+   AG    A  + +EM      P
Sbjct: 336 GYARAGNLDVALAYLEEMKSSGFSPTPSALEVLVNSLLKAGRFGAAEAVVQEMAAINGGP 395

Query: 432 NSQCCNILLQA 442
             +     L A
Sbjct: 396 GKKIVTGTLAA 406


>gi|359477372|ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containing protein At3g23020
           [Vitis vinifera]
          Length = 881

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 103/215 (47%), Gaps = 21/215 (9%)

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           L+ KG  +L+V  Y+ ++++   A+ W     + ++M+S G+TP   T+ +LI+  +  G
Sbjct: 186 LKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGG 245

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
           L E+A+H  + M + G EP+     +++Q   +A +F +A + F++W+L KT   L ++ 
Sbjct: 246 LTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLGKT---LKDEG 302

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRV 532
             +    ++      Q      ++  N+   ++ K    +  + T+  +++         
Sbjct: 303 KTSEPTATSAVESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLRE-------- 354

Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                     G+ PN +++  +I  CG  G +E A
Sbjct: 355 ----------GIIPNTVTFNTMIHICGNHGQLEEA 379



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 99/218 (45%), Gaps = 22/218 (10%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLG 319
           ++ + G    +    ++++++ S+ +T     + +L++V +     +  L     M K G
Sbjct: 202 MLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLDRMNKQG 261

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIY------------GEVKHLEAKGVLK------- 360
           +  D  +  ++++    AG    A++ +            G+     A   ++       
Sbjct: 262 MEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLGKTLKDEGKTSEPTATSAVESASQPHV 321

Query: 361 -LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
            L  +TY+T++  +  A   + A      ML  G+ PNT+T++++I+ C N G +E+A  
Sbjct: 322 CLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAAS 381

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           L ++M +  C P+++  NIL+    +    DRA   F+
Sbjct: 382 LMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFK 419



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 14/203 (6%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-----HDLKFTLEVYKNMQ 316
           +I   GI   Y K+  + + + +  V  + + +NSL+ + A     H  KF L     MQ
Sbjct: 539 MIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYL---MKMQ 595

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  +++D   Y  ++ +    G   +A+ ++ E+        ++ DV  Y  ++  FAD 
Sbjct: 596 ETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGYN----VQPDVVVYGILINAFADV 651

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPNSQC 435
              + A+     + +AG+  N + ++SLI      G +E+A   + +MLQA    P+   
Sbjct: 652 GNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAY-KMLQASEVGPDVYS 710

Query: 436 CNILLQACVEACQFDRAFRLFRS 458
            N ++    E     +A  +F S
Sbjct: 711 SNCMIDLYSERSMVKQAEEIFES 733



 Score = 38.5 bits (88), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 72/155 (46%), Gaps = 6/155 (3%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  +GK   L  A   +    +    PN     T+I +CG  G   ++ ++ + + 
Sbjct: 328 YNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKME 387

Query: 284 SQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
                 +   +N L++++A  +++      +K M++  +  D+ SY  LL A  +  + V
Sbjct: 388 ELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSIR-HLV 446

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
              EI   V  ++ +G L++D FT S + +++ +A
Sbjct: 447 GEAEIL--VSEMDERG-LEIDEFTQSALTRMYIEA 478


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 145/324 (44%), Gaps = 40/324 (12%)

Query: 249 KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLK 306
           + L +PN++    +ID     GD  ++RA+   +++   + ++  +NSL++      +L+
Sbjct: 187 EQLPAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELE 246

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
              ++   M+  G   D+ +YN L+   C  G    A   + E+K    +GV+  +V T+
Sbjct: 247 EVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKR---EGVMA-NVVTF 302

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           ST V  F      + A+K+   M   G+ PN +T++ L++    AG ++ A+ L  EM+Q
Sbjct: 303 STFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQ 362

Query: 427 AGCEPNSQCCNILLQA-CVEA--CQFDRAFRL-----FRSWTLSKTQVALGEDYDGNTDR 478
            G   N     +L+   C E    + +  FRL      R+  L  T +  G     N++R
Sbjct: 363 QGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSER 422

Query: 479 ISNM--EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKA 534
             ++  E KDK                        +   + Y  L+   C        K+
Sbjct: 423 ALSLLSEMKDK----------------------GMELDVSLYGALIWGLCNLQKLDEAKS 460

Query: 535 LMNEMRTVGLSPNHISWTILIDAC 558
           L+N+M   GL PN++ +T ++DAC
Sbjct: 461 LLNKMDECGLKPNNVIYTNIMDAC 484



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 88/411 (21%), Positives = 174/411 (42%), Gaps = 26/411 (6%)

Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP-DVNLAIRYACIVPRADIL 223
           L D G ++  V  +  + E R+P          + LC+ +     LA R    +P  ++ 
Sbjct: 138 LADRGLLDDAVLALARVRELRVPPNT--RTCNHILLCLARERSSELAWRLFEQLPAPNVF 195

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
             N + +F  K   ++  RA  A  K +  SP++    ++ID  G CG+  +   +  ++
Sbjct: 196 TFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEM 255

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           R      ++  +N+L+N       ++     +  M++ GVMA++ +++  + A C  G  
Sbjct: 256 RGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMV 315

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A +++ +++    KG +K +  TY+ +V     A     AL +  +M+  GV  N +T
Sbjct: 316 REAMKLFAQMR---MKG-MKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVT 371

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++ L++     G V +A  +F  M +AG   N      L+         +RA  L     
Sbjct: 372 YTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMK 431

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDK-QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
               ++ +   Y      + N++  D+ +S+ N  +                KP    Y 
Sbjct: 432 DKGMELDVSL-YGALIWGLCNLQKLDEAKSLLNKMD------------ECGLKPNNVIYT 478

Query: 520 ILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            +M AC          AL+ +M   G  PN +++  L+D    +G+++ A+
Sbjct: 479 NIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAI 529



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/373 (20%), Positives = 151/373 (40%), Gaps = 31/373 (8%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F  FV  F K   +  A++ +   +     PN      ++D     G    +  +  +
Sbjct: 300 VTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNE 359

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q V LN+  +  L++    + K     +V++ M++ G+ A+   Y  L+    +  N
Sbjct: 360 MVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKN 419

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           +  A  +  E+K    KG ++LDV  Y  ++    + +    A  +   M   G+ PN +
Sbjct: 420 SERALSLLSEMKD---KG-MELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNV 475

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++++++AC  A    +A+ L ++M+ +G  PN      L+    +A   D A   F   
Sbjct: 476 IYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKM 535

Query: 460 --------TLSKTQVALGEDYDGNTDRISNM--EHKDK-QSITNTP-NFVPNSHYSSFDK 507
                     + T +  G   +G  D+   +  E  DK  S+ N     + + H    + 
Sbjct: 536 VDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNL 595

Query: 508 RFSFKPTTTTYNILMKACCTDY-------------YRVKALMNEMRTVGLSPNHISWTIL 554
           + +F       N  ++     Y                + +++EM   G++P+ + +  L
Sbjct: 596 QDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCL 655

Query: 555 IDACGGSGNVEGA 567
           I+ C   GN+E A
Sbjct: 656 INKCQKLGNMEEA 668



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 33/204 (16%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN  I   I+D C       ++ A+ + +       NI  + +L++    A  +   +  
Sbjct: 472 PNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISH 531

Query: 312 YKNMQKLGVMADMASYNILLKACCLAG--------------------NTVLAQEIYGEVK 351
           +  M  LG+  ++ +Y  L+   C  G                    N V    + G +K
Sbjct: 532 FNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLK 591

Query: 352 H--------LEAKGV---LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
                    L+AK +   L+LD++ Y+  V  F +    Q A +V  +M+  G+TP+ + 
Sbjct: 592 QGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVV 651

Query: 401 WSSLINACANAGLVEQAMHLFEEM 424
           ++ LIN C   G +E+A  L  EM
Sbjct: 652 YNCLINKCQKLGNMEEAAILQNEM 675


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 145/345 (42%), Gaps = 41/345 (11%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           ++ F K+  L    + ++    +  SP+      +ID     G   ++  +YE++ S  +
Sbjct: 15  LKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGL 74

Query: 288 TLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             +IY +NSL+N    +  +K  +E++K M + G   D+ +Y+ ++   C  G    A E
Sbjct: 75  EPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALE 134

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +   + H   +     +   Y+ ++      +  + A K+ E+M S G  P+ IT+++++
Sbjct: 135 M---LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTIL 191

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW------ 459
           +     G V +A   F+ M   G  P+    N LL A  +  + D A +LF+        
Sbjct: 192 SGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYM 251

Query: 460 --TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
             T++   + LG     N D    M  K   S                       P   T
Sbjct: 252 PDTVTYNSILLGLARKSNMDEAEEMFKKMVAS--------------------GCAPNGAT 291

Query: 518 YNILMKACC-----TDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           Y+I++   C      D ++V   + EM  +G  P+ +++ IL+D 
Sbjct: 292 YSIVLSGHCRAKKVDDAHKV---LEEMSKIGAVPDVVTYNILLDG 333



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/369 (20%), Positives = 156/369 (42%), Gaps = 36/369 (9%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI---YE 280
           + + +  F K+  +  A+  +    +    P++    TII   G+C     + A+   + 
Sbjct: 81  YNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIIS--GLCKTGKVTEALEMLFH 138

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +  +  + N   +N+L+N    D  ++   ++ + M   G + D  +YN +L   C  G
Sbjct: 139 KMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMG 198

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A++ +     + ++G    DV  Y+ ++           A+K+ +D+++ G  P+T
Sbjct: 199 KVSEAKQFF---DSMPSRG-YSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDT 254

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +T++S++   A    +++A  +F++M+ +GC PN    +I+L     A + D A ++   
Sbjct: 255 VTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEE 314

Query: 459 WT---LSKTQVALGEDYDG--NTDRISNMEHKDKQSITN--TPNFVPNS----------- 500
            +        V      DG   T+ +          + N   P+ V  S           
Sbjct: 315 MSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNK 374

Query: 501 -HYSS--FDKRFSFK--PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTI 553
            H +   FD+    K  P   T+NILM   C        K L+++M   G +P+++++  
Sbjct: 375 VHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNT 434

Query: 554 LIDACGGSG 562
           L++     G
Sbjct: 435 LMNGLRKQG 443



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 13/208 (6%)

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
           +T+  ++K F      +   K+ E ML  G++P+ I ++ LI+  A  G V++A  L+EE
Sbjct: 9   YTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEE 68

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M+  G EP+    N LL A  +  +   A  LF++      +     D    +  IS + 
Sbjct: 69  MVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTM----AEKGFEPDVVTYSTIISGLC 124

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRT 541
              K  +T     +    +   ++  S    T  YN L+   C D    R   L+ EM +
Sbjct: 125 KTGK--VTEALEML---FHKMIERGCS--ANTVAYNALINGLCKDENIERAYKLLEEMAS 177

Query: 542 VGLSPNHISWTILIDACGGSGNVEGALQ 569
            G  P++I++  ++      G V  A Q
Sbjct: 178 KGYVPDNITYNTILSGLCRMGKVSEAKQ 205


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 143/322 (44%), Gaps = 13/322 (4%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           P+++   ++I   G C  G +  +  + +++  + ++ ++  +N+L+N    + KF    
Sbjct: 288 PDLFTYNSMI--VGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAA 345

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+Y  M   G++ +  +YN ++   C       A++++    +L A      DVFT++T+
Sbjct: 346 ELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMF----YLMATKGCSPDVFTFTTL 401

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +  AK     +++  +M   G+  NT+T+++LI+     G +  A+ L ++M+ +G 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 461

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            P+   CN LL    +  +   A  +F++   SK  +     ++G    +          
Sbjct: 462 CPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGL 521

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
           I           Y     R    P T TY+ ++   C      +A  +   M +   SPN
Sbjct: 522 INEGKFLEAEELYEEMPHR-GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 580

Query: 548 HISWTILIDACGGSGNVEGALQ 569
            +++  LI+    +G V+  L+
Sbjct: 581 VVTFNTLINGYCKAGRVDDGLE 602



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 121/269 (44%), Gaps = 29/269 (10%)

Query: 309 LEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
           L + + M+++  ++ ++  Y+ ++ + C  G    AQ ++ E   ++ KG+   D+FTY+
Sbjct: 239 LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE---MQEKGIFP-DLFTYN 294

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           +++  F  +  W  A ++ ++ML   ++P+ +T+++LINA    G   +A  L++EML  
Sbjct: 295 SMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPR 354

Query: 428 GCEPNSQCCNILLQACVEACQFDRA---FRLFRSWTLSKTQVALGEDYDG--NTDRISNM 482
           G  PN+   N ++    +  + D A   F L  +   S          DG     RI + 
Sbjct: 355 GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDD- 413

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMR 540
                + +   P             R      T TYN L+   C   D      L  +M 
Sbjct: 414 ---GMELLHEMP-------------RRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMI 457

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQ 569
           + G+ P+ ++   L+D    +G ++ AL+
Sbjct: 458 SSGVCPDIVTCNTLLDGLCDNGKLKDALE 486



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 19/177 (10%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL---- 318
           G C  GD   +  + + + S  V  +I   N+L++   +   LK  LE++K MQK     
Sbjct: 439 GFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDL 498

Query: 319 -------GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
                  GV  D+ +YNIL+      G  + A+E+Y E+ H   +G++  D  TYS+++ 
Sbjct: 499 DASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH---RGIVP-DTITYSSMID 554

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
                     A ++   M S   +PN +T+++LIN    AG V+  + LF EM + G
Sbjct: 555 GLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRG 611



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 108/277 (38%), Gaps = 30/277 (10%)

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             + +Y+ M++  +  D+ S+NIL+K  C       A   +G++  L     L  DV T+
Sbjct: 97  LVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLG----LHPDVVTF 152

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++           AL     M      PN +T+++L+N     G + +A+ L + M++
Sbjct: 153 TTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMME 212

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI-SNMEHK 485
            G +P       ++    +      A  L R        +     Y    D +  +  H 
Sbjct: 213 DGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHS 272

Query: 486 DKQSITNT-------PN-FVPNSHYSSF--DKRFS-------------FKPTTTTYNILM 522
           D Q++          P+ F  NS    F    R+S               P   TYN L+
Sbjct: 273 DAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332

Query: 523 KACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
            A   +  ++    L +EM   G+ PN I++  +ID 
Sbjct: 333 NAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDG 369



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 22/256 (8%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----- 270
           I+P   I + + +  F K+  L +A   +        SP+++   T+ID  G CG     
Sbjct: 356 IIPNT-ITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLID--GYCGAKRID 412

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           D M+   +  ++  + +  N   +N+L++      DL   L++ + M   GV  D+ + N
Sbjct: 413 DGME---LLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCN 469

Query: 329 ILLKACCLAGNTVLAQEIYGEVKH----LEA----KGVLKLDVFTYSTIVKVFADAKWWQ 380
            LL   C  G    A E++  ++     L+A     GV + DV TY+ ++    +   + 
Sbjct: 470 TLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGV-EPDVLTYNILICGLINEGKFL 528

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A ++ E+M   G+ P+TIT+SS+I+       +++A  +F  M      PN    N L+
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 588

Query: 441 QACVEACQFDRAFRLF 456
               +A + D    LF
Sbjct: 589 NGYCKAGRVDDGLELF 604



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 138/332 (41%), Gaps = 33/332 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SP++     +I+     G + ++  +Y+++  + +  N   +NS+++       L    +
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAED 381

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M   G   D+ ++  L+   C A       E+  E+     +G++  +  TY+T++
Sbjct: 382 MFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPR---RGLVA-NTVTYNTLI 437

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA--- 427
             F        AL + + M+S+GV P+ +T ++L++   + G ++ A+ +F+ M ++   
Sbjct: 438 HGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMD 497

Query: 428 --------GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
                   G EP+    NIL+   +   +F  A  L+      +  V     Y    D +
Sbjct: 498 LDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMP-HRGIVPDTITYSSMIDGL 556

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK---ALM 536
                 D+ +            + S   + SF P   T+N L+   C    RV     L 
Sbjct: 557 CKQSRLDEAT----------QMFVSMGSK-SFSPNVVTFNTLINGYCK-AGRVDDGLELF 604

Query: 537 NEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            EM   G+  + I +  LI      GN+ GAL
Sbjct: 605 CEMGRRGIVADAIIYITLIYGFRKVGNINGAL 636


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 134/284 (47%), Gaps = 31/284 (10%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           DL+FTL  ++ M K G+  D  ++N LL AC   G+   A+ ++ E+ HL   G+ + D+
Sbjct: 32  DLRFTLGYFRQMLKDGLCPDRKTFNSLLAACSRVGHLEDARAVFDEMIHL---GIGR-DI 87

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
           +TY+T +         ++A++V  DM + GV PN +T+S+LI+  +     E+A+ L E+
Sbjct: 88  YTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEK 147

Query: 424 MLQAGCEPNSQCCNILLQACVEACQF-------DRAFRL-FRSWTLSKTQVALGEDYDGN 475
           M     + +  C N LL   V+A ++       D    L     T++   +  G    G 
Sbjct: 148 MKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGR 207

Query: 476 TDRISNMEHKDKQSITNTPNFVPNS-----------HYSSFDKRFSFKPTTTTYNILMKA 524
            D +S +  +D +     P+ +  S           H  +F+    FK +    ++++ +
Sbjct: 208 LDIVSILV-QDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFS 266

Query: 525 CCTDYYR-------VKALMNEMRTVGLSPNHISWTILIDACGGS 561
              D            +L+N+M  +G+ PN +++  +IDA G S
Sbjct: 267 SFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKS 310



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 130/307 (42%), Gaps = 42/307 (13%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           PN+    T+ID       Y ++  + E ++S  + L+   +N+L+ +     K+     V
Sbjct: 120 PNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANV 179

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M++LG+  D  +YN L+      G   +   +   V+ +  +GV    V TYST++ 
Sbjct: 180 CDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSIL---VQDMRKRGVAP-SVLTYSTLID 235

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +++ A     A  V  D   +G+ P+ + +SS I+  A  GL+E A+ L  +M + G +P
Sbjct: 236 IYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKP 295

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED-----------YDGNTDRIS 480
           N    N ++ A                    K++V + +D           Y G   R++
Sbjct: 296 NVVTYNAIIDA------------------FGKSKVMMEDDSEVGDMGIVGVYGGQIVRVA 337

Query: 481 NMEHKDKQSITNTPNFVPNSHY---SSFDK--RFSFKPTTTTYNILMKAC--CTDYYRVK 533
           N   +  +S T+         +     F K  +   +P   T++ ++ AC  C  +    
Sbjct: 338 NPVSRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNSFEDAA 397

Query: 534 ALMNEMR 540
            L+ ++R
Sbjct: 398 LLLEQLR 404



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 108/221 (48%), Gaps = 18/221 (8%)

Query: 217 VPRADILFCNFVREFGK--KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           + +  + + + +  +GK  + D+VS L   D  K+ ++ P++    T+ID+    G +  
Sbjct: 188 IEKDTVTYNSLINGYGKQGRLDIVSIL-VQDMRKRGVA-PSVLTYSTLIDIYSKAGMHGD 245

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLK 332
           +  +Y D +   +  ++ +F+S ++  A +  +++ L +  +M ++G+  ++ +YN ++ 
Sbjct: 246 AFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIID 305

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV----KVFADAKWWQ-----MAL 383
           A    G + +  E   EV  +   GV    +   +  V    +   D +  +       L
Sbjct: 306 AF---GKSKVMMEDDSEVGDMGIVGVYGGQIVRVANPVSRGGRSATDVRMRRSQELFFIL 362

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           ++ + M+  GV PN +T+S+++NAC+     E A  L E++
Sbjct: 363 ELFQKMVQQGVRPNVVTFSAILNACSRCNSFEDAALLLEQL 403



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 34/213 (15%)

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGL-VEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           + V E M  AG+ P T++++++I+AC   G+ +   +  F +ML+ G  P+ +  N LL 
Sbjct: 1   MGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLA 60

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRI---SNMEHK-----DKQSI 490
           AC      + A  +F         + +G D   Y+   D I    NME       D ++ 
Sbjct: 61  ACSRVGHLEDARAVFD----EMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAK 116

Query: 491 TNTPNFVPNS----HYSSFD------------KRFSFKPTTTTYNILMK--ACCTDYYRV 532
              PN V  S     YS  +            K    +     YN L+        Y  +
Sbjct: 117 GVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEI 176

Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
             + +EM  +G+  + +++  LI+  G  G ++
Sbjct: 177 ANVCDEMEELGIEKDTVTYNSLINGYGKQGRLD 209


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 156/350 (44%), Gaps = 27/350 (7%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
           F   +  +G+      A+  +++ K++   PN+     +ID CG  G ++ +    ++++
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEM 330

Query: 283 RSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           +   V  +   FNSL+ V +     +    ++  M    +  D+ SYN LL A C  G  
Sbjct: 331 QRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQM 390

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
            LA EI   +  +  K ++  +V +YST++  FA A  +  AL +  +M   G+  + ++
Sbjct: 391 DLAFEI---LAQMPVKRIMP-NVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVS 446

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +++L++     G  E+A+ +  EM   G + +    N LL    +  ++D   ++F   T
Sbjct: 447 YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVF---T 503

Query: 461 LSKTQVALGE--DYDGNTDRISNME-HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
             K +  L     Y    D  S    +K+   I           +  F K    +     
Sbjct: 504 EMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEI-----------FREF-KSAGLRADVVL 551

Query: 518 YNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           Y+ L+ A C +     A  L++EM   G+SPN +++  +IDA G S  ++
Sbjct: 552 YSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMD 601



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 139/306 (45%), Gaps = 29/306 (9%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           PN+    T+ID     G + ++  ++ ++R   + L+   +N+L+++       +  L++
Sbjct: 407 PNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDI 466

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M  +G+  D+ +YN LL      G     ++++ E+K    + VL  ++ TYST++ 
Sbjct: 467 LREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKR---EHVLP-NLLTYSTLID 522

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            ++    ++ A+++  +  SAG+  + + +S+LI+A    GLV  A+ L +EM + G  P
Sbjct: 523 GYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISP 582

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG--EDYDGN---------TDRIS 480
           N    N ++ A   +   DR+       +L  +  AL    + +GN         T   +
Sbjct: 583 NVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESN 642

Query: 481 NMEHKD----KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKA 534
           N   KD     Q ++         H      +   KP   T++ ++ AC  C  +     
Sbjct: 643 NRTTKDCEEGMQELSCILEVFRKMH------QLEIKPNVVTFSAILNACSRCNSFEDASM 696

Query: 535 LMNEMR 540
           L+ E+R
Sbjct: 697 LLEELR 702


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 7/199 (3%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           TI+DV        K+  ++  LR +  +++   +N ++N          TLEV K M + 
Sbjct: 160 TILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVER 218

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  ++ +YN +LK    AG    A E + E+K    K   ++DV TY+T+V  F  A  
Sbjct: 219 GINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMK----KRDCEIDVVTYTTVVHGFGVAGE 274

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            + A  V ++M+  GV P+  T++++I        VE A+ +FEEM++ G EPN    N+
Sbjct: 275 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 334

Query: 439 LLQACVEACQFDRAFRLFR 457
           L++    A +F R   L +
Sbjct: 335 LIRGLFHAGEFSRGEELMQ 353



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 115/264 (43%), Gaps = 23/264 (8%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           ++++ NM + G   D+AS+N +L   C +     A E++  +     +G   +D  TY+ 
Sbjct: 140 VKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL-----RGRFSVDTVTYNV 194

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I+  +   K     L+V ++M+  G+ PN  T+++++     AG +  A   F EM +  
Sbjct: 195 ILNGWCLIKRTPKTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRD 254

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           CE +      ++     A +  RA  +F          ++   Y+     I  +  KD  
Sbjct: 255 CEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA-TYNA---MIQVLCKKD-- 308

Query: 489 SITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGL 544
              N  N V       F++  R  ++P  TTYN+L++      ++ R + LM  M   G 
Sbjct: 309 ---NVENAV-----VMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGC 360

Query: 545 SPNHISWTILIDACGGSGNVEGAL 568
            PN  ++ ++I        VE AL
Sbjct: 361 EPNFQTYNMMIRYYSECSEVEKAL 384



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 92/192 (47%), Gaps = 6/192 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLE 310
           +PN+    T++      G    +   + +++ ++  +++  + ++++    A ++K    
Sbjct: 221 NPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARN 280

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+  M + GV+  +A+YN +++  C   N   A  ++ E+     +   + +V TY+ ++
Sbjct: 281 VFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEM----VRRGYEPNVTTYNVLI 336

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +    A  +    ++ + M + G  PN  T++ +I   +    VE+A+ LFE+M    C 
Sbjct: 337 RGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCL 396

Query: 431 PNSQCCNILLQA 442
           PN    NIL+  
Sbjct: 397 PNLDTYNILISG 408


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 124/279 (44%), Gaps = 29/279 (10%)

Query: 204 KPD-------VNLAIRYACIVPRADILFCNFVREFGKKRDLVS----------------A 240
           KPD       +N  ++   ++P   I   N VR  G + D ++                A
Sbjct: 286 KPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISACSRASNLEEA 345

Query: 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300
            + +D  + H   P+++    +I V G CG   K+  ++ DL S+    +   +NSL+  
Sbjct: 346 AKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYA 405

Query: 301 NAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358
            A +  ++   E+++ M K+G   D  +YN ++      G   LA ++Y   + +++ G 
Sbjct: 406 FAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLY---RDMQSSG- 461

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
              D  TY+ ++           A  V  +ML+ GV P   T+S+LI   A AG   +A 
Sbjct: 462 RNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALICGYAKAGKPVEAE 521

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             F+ ML++G  P+    +++L   +   +  RA  L++
Sbjct: 522 ETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAMTLYK 560



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 127/290 (43%), Gaps = 27/290 (9%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           D M+ R    DL S N  +N  +    M  N       +E+   +++ G+  D  +YN L
Sbjct: 278 DLMRERGCKPDLVSFNTLINARLKAGAMMPN-----LAIELLNEVRRSGLRPDTITYNTL 332

Query: 331 LKACCLAGNTVLAQEIYG--EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           + AC  A N   A +++   E  H +       D++TY+ ++ V+        A ++  D
Sbjct: 333 ISACSRASNLEEAAKVFDDMEAHHCQP------DLWTYNAMISVYGRCGLSGKAEQLFND 386

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           + S G  P+ ++++SL+ A A  G VE+   ++EEM++ G   +    N ++    +  Q
Sbjct: 387 LESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQ 446

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
            + A +L+R    S            N D ++     D  S+  T      +   S    
Sbjct: 447 NELALQLYRDMQSSGR----------NPDAVTYTVLID--SLGKTNKIAEAAGVMSEMLN 494

Query: 509 FSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILID 556
              KPT  TY+ L+         V+A    + M   G+ P+H+++++++D
Sbjct: 495 TGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLD 544



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 112/276 (40%), Gaps = 38/276 (13%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V+ +M+  G+ A  + Y  ++   C  G    A  +   +   E+ G+L  ++  Y  +
Sbjct: 728 QVFSDMRFCGIKASESLYESMVLLYCKMGFPETAHHL---IDFAESDGILLNNISLYVNV 784

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           ++ +   K WQ A  V  ++    +T +   W++LI A A +G  E+A  +F  M++ G 
Sbjct: 785 IEAYGRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCYERARAIFNTMMRDGP 844

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFR-----SWTLSKTQVALGED---YDGNTDRISN 481
            P     N LLQA +   + D  + + +      + +SK+ + L  D     GN   +  
Sbjct: 845 SPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILLMLDAFARAGNIFEVKK 904

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRF--------------------SFKPTTTTYNIL 521
           + H  K +      + P  H      R                      FKP  + +N +
Sbjct: 905 IYHGMKAA-----GYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSV 959

Query: 522 MK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
           +K      D+ +   +   ++  GL P+  ++  LI
Sbjct: 960 LKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLI 995



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/322 (19%), Positives = 127/322 (39%), Gaps = 42/322 (13%)

Query: 262  IIDVCGICGDYMKSRAIYEDLRSQNV--TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG 319
            ++D     G+  + + IY  +++     T+++Y   + +      ++    +   M++ G
Sbjct: 889  MLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAG 948

Query: 320  VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
               D++ +N +LK      +     ++Y  +K    +  L+ D  TY+T++ ++      
Sbjct: 949  FKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIK----EDGLEPDEDTYNTLIVMYCRDHRP 1004

Query: 380  QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
            +    +  +M  AG+ P   T+ SL+ +     LVEQA  LFEE+   GC+ +    + +
Sbjct: 1005 EEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTM 1064

Query: 440  LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
            ++    +    +A RLF                       S M+    +    T + +  
Sbjct: 1065 MKIYRNSGSHSKAERLF-----------------------SMMKDAGVEPTIATMHLLMV 1101

Query: 500  SHYSSFDKRFS------FKPTTTTYNILMKACCTDYYRVKALMN-------EMRTVGLSP 546
            S+ SS   + +       K T +  + L  +   D Y      N       +M+  GL P
Sbjct: 1102 SYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGDYNIGIQKLIQMKKEGLEP 1161

Query: 547  NHISWTILIDACGGSGNVEGAL 568
            +H  WT  I A   S     A+
Sbjct: 1162 DHRIWTCFIRAASLSRRTSEAI 1183



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 94/213 (44%), Gaps = 8/213 (3%)

Query: 231  FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
            F +  ++    + Y   K     P M++ R +  +           A+  ++       +
Sbjct: 893  FARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPD 952

Query: 291  IYVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            + ++NS+  M V   D + T++VY+ +++ G+  D  +YN L+   C        +E + 
Sbjct: 953  LSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHR---PEEGFS 1009

Query: 349  EVKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             +  +   G+  KLD  TY ++V  F   +  + A ++ E++ S G   +   + +++  
Sbjct: 1010 LMHEMRVAGLEPKLD--TYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKI 1067

Query: 408  CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
              N+G   +A  LF  M  AG EP     ++L+
Sbjct: 1068 YRNSGSHSKAERLFSMMKDAGVEPTIATMHLLM 1100



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 91/222 (40%), Gaps = 38/222 (17%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG--LVEQAMHL 420
           V  Y+ ++ V+A    +    ++ + M   G  P+ +++++LINA   AG  +   A+ L
Sbjct: 254 VQVYNAMMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIEL 313

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS----------WTLSKTQVALGE 470
             E+ ++G  P++   N L+ AC  A   + A ++F            WT +      G 
Sbjct: 314 LNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGR 373

Query: 471 -DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD- 528
               G  +++                      ++  + R  F P   +YN L+ A   + 
Sbjct: 374 CGLSGKAEQL----------------------FNDLESR-GFFPDAVSYNSLLYAFAREG 410

Query: 529 -YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              +VK +  EM  +G   + +++  +I   G  G  E ALQ
Sbjct: 411 NVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQ 452



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 122/317 (38%), Gaps = 55/317 (17%)

Query: 255  NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVY 312
            N+ +   +I+  G    + K+ ++  +LR + +T++  V+N+L+   A     +    ++
Sbjct: 777  NISLYVNVIEAYGRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCYERARAIF 836

Query: 313  KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
              M + G    + + N LL+A  + G      E+Y  V+ L+  G  K+   +   ++  
Sbjct: 837  NTMMRDGPSPTVDTINGLLQALIVDGRL---DELYVVVQELQDMG-FKISKSSILLMLDA 892

Query: 373  FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
            FA A       K+   M +AG  P    +  +    +    V     +  EM +AG +P+
Sbjct: 893  FARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPD 952

Query: 433  SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
                N +L+  V    F +  ++++                    RI             
Sbjct: 953  LSIWNSVLKMYVAIEDFRKTIQVYQ--------------------RI------------- 979

Query: 493  TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK--ALMNEMRTVGLSPNHIS 550
                          K    +P   TYN L+   C D+   +  +LM+EMR  GL P   +
Sbjct: 980  --------------KEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDT 1025

Query: 551  WTILIDACGGSGNVEGA 567
            +  L+ + G    VE A
Sbjct: 1026 YKSLVASFGKQQLVEQA 1042


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 159/333 (47%), Gaps = 28/333 (8%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           K  +L +A+   +  K+    PN++   ++ID  G+C  G + K + +  ++ + N+  N
Sbjct: 215 KDINLDAAINLLNEMKQKNIPPNIFTYNSLID--GLCKLGQWEKVKTLLSEMVNLNINPN 272

Query: 291 IYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           ++ F+ L++    + K     EV ++M + GV  D+ +Y+ ++   CL G    A+ ++ 
Sbjct: 273 VHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFN 332

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
               L  KG+ K ++F+YS ++  +   K    A+++  ++   G+ P+T+T+S++++  
Sbjct: 333 V---LRDKGI-KPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGL 388

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468
              G +  A  +F+EML+ G  P+    + LL    +    + A  LF     ++    +
Sbjct: 389 IEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNI 448

Query: 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK--PTTTTYNILMKACC 526
                  T  I+ +   D+         V  +H + F+K  S    P   TYN+++   C
Sbjct: 449 S----FYTVVINGLCKNDR---------VREAH-AIFEKLPSIGLIPDVRTYNVMITGFC 494

Query: 527 TD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
            +  +  VK ++ +M   G   N+I++ +++  
Sbjct: 495 REGLFDEVKGILRKMEDNGCPANNITYNVIMQG 527



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 53/262 (20%)

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
           TL + + M++     D+ +Y+I++ A C   N   A  +  E+K       +  ++FTY+
Sbjct: 187 TLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKN----IPPNIFTYN 242

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           +++        W+    +  +M++  + PN  T+S LI+     G VE A  +   M++ 
Sbjct: 243 SLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEK 302

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
           G EP+    + ++       Q DRA R+F                            +DK
Sbjct: 303 GVEPDIITYSAIMDGYCLRGQVDRARRVFNVL-------------------------RDK 337

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
                                   KP   +Y+IL+   C      KA  L  E+   GL 
Sbjct: 338 ----------------------GIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLK 375

Query: 546 PNHISWTILIDACGGSGNVEGA 567
           P+ ++++ ++      G +  A
Sbjct: 376 PDTVTYSTILHGLIEVGRIGDA 397



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 114/278 (41%), Gaps = 56/278 (20%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           +F +++N+  +    +L  ++ M+ LG+    +  NI+  + CL      A  +      
Sbjct: 68  LFKTMINMKHYSAVVSL--FREMRILGIPISDSILNIVTNSYCLRHRIDCAFSVL----P 121

Query: 353 LEAKGVLKLDVFTYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
           +  K  +  +V T++T++  +FA+ K     +  K+ +      PN + + +++N  +  
Sbjct: 122 IYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKR 181

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
           G  E+ + L   M Q   +P+ +  +I++ A  +    D A  L                
Sbjct: 182 GHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINL---------------- 225

Query: 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DY 529
                  ++ M+ K      N P                  P   TYN L+   C    +
Sbjct: 226 -------LNEMKQK------NIP------------------PNIFTYNSLIDGLCKLGQW 254

Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            +VK L++EM  + ++PN  +++ILID     G VE A
Sbjct: 255 EKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDA 292



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 79/216 (36%), Gaps = 49/216 (22%)

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +G  K DV TYS ++           A+ +  +M    + PN  T++SLI+     G  E
Sbjct: 196 QGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWE 255

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
           +   L  EM+     PN    +IL+    +  + + A                       
Sbjct: 256 KVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDA----------------------- 292

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVK 533
            D +  M H  ++ +                     +P   TY+ +M   C      R +
Sbjct: 293 -DEV--MRHMIEKGV---------------------EPDIITYSAIMDGYCLRGQVDRAR 328

Query: 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            + N +R  G+ PN  S++ILI+      N+  A+Q
Sbjct: 329 RVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQ 364



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 44/256 (17%), Positives = 100/256 (39%), Gaps = 39/256 (15%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++     I+D   + G   ++R ++  LR + +  NI+ ++ L+N      +L   +++
Sbjct: 306 PDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQL 365

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-----------GVLK 360
           +  + + G+  D  +Y+ +L      G    A++I+ E+  +              G  K
Sbjct: 366 FGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFK 425

Query: 361 L--------------------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
                                ++  Y+ ++         + A  + E + S G+ P+  T
Sbjct: 426 YGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRT 485

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++ +I      GL ++   +  +M   GC  N+   N+++Q       F R+ ++    +
Sbjct: 486 YNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQG------FFRSNKISEIVS 539

Query: 461 LSKTQVALGEDYDGNT 476
             K     G  +D  T
Sbjct: 540 FMKEMAGRGFSFDATT 555


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 122/284 (42%), Gaps = 31/284 (10%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y +M   G + +  +Y  LL++ C A     A+ ++   + + A+G    +VF+YS ++ 
Sbjct: 40  YNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVF---RGMAAQGC-SPNVFSYSILIA 95

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                +    A ++  +M+  G  PN +T+ SL++     G +++A+ LF  M+  GC P
Sbjct: 96  GLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPP 155

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISNME 483
           +    N+L+    +      A+RLF             +   +  G    G   R+ ++ 
Sbjct: 156 DGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSL- 214

Query: 484 HKDKQSITNTPN-FVPNSHYSSFDK---------------RFSFKPTTTTYNILMKACCT 527
            KD       PN F  N+    F K                    P   +YN LM+  C+
Sbjct: 215 FKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCS 274

Query: 528 --DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               +  + L+ EM   G+ P+ +S+ ILID    SG ++ A++
Sbjct: 275 KGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIK 318



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 117/236 (49%), Gaps = 9/236 (3%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P   +++   +  F KK D+  A R ++   +    P ++   +++      G++ + ++
Sbjct: 154 PPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQS 213

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++D+  Q    NI+ FN+L++      D+     ++  M+ LG   D+ SYN L++  C
Sbjct: 214 LFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMC 273

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    AQ +  E+     +  +  D+ +Y+ ++  ++ +     A+K+  ++  +G+ 
Sbjct: 274 SKGKPHEAQRLLREM----IRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLE 329

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           P+  ++S++I+    AG V  A  +F++M+  G  P++    +++   +  C+ +R
Sbjct: 330 PDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAA---VVIPLVIGLCRGER 382



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 108/206 (52%), Gaps = 6/206 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P+  +   +ID     GD  ++  ++E++  +     ++ +NSL++  +   +F     +
Sbjct: 155 PDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSL 214

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +K+M + G + ++ ++N LL   C  G+ V A  ++ E++ L        DV +Y+T+++
Sbjct: 215 FKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPP----DVVSYNTLMR 270

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                     A ++  +M+ +GV P+ ++++ LI+  + +G ++ A+ LF E+ ++G EP
Sbjct: 271 GMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEP 330

Query: 432 NSQCCNILLQACVEACQFDRAFRLFR 457
           ++   + ++     A +   AF +F+
Sbjct: 331 DAFSYSTIIDCLCRAGKVGAAFVVFK 356



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 6/175 (3%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  + SL++       LK  ++++  M   G   D   YN+L+      G+   A  ++
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLF 180

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            E+  LE KG +   VFTY++++  F+    +     + +DML  G  PN  T+++L++ 
Sbjct: 181 EEM--LE-KGCIP-TVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
               G + +A  LF EM   GC P+    N L++      +   A RL R    S
Sbjct: 237 FCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRS 291



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 81/219 (36%), Gaps = 25/219 (11%)

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            +Y+ +++V A +           DML AG  PNT T+  L+ +   A   E+A  +F  
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ---VALGEDYDG------ 474
           M   GC PN    +IL+       + D A  L         Q   V  G    G      
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 475 ---NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK-----------PTTTTYNI 520
                D  S M ++         N + +      D   +++           PT  TYN 
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 521 LMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           L+       ++ RV++L  +M   G  PN  ++  L+D 
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 38/182 (20%)

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            T++++ L+   A +G  +     + +ML AGC PN+     LL++  +A +F+ A  +F
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 457 R------------SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
           R            S+++    +  G+  D   + ++ M              +   H   
Sbjct: 76  RGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEM--------------IDGGH--- 118

Query: 505 FDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSG 562
                  +P   TY  L+   C      +A  L + M   G  P+ + + +LID     G
Sbjct: 119 -------QPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKG 171

Query: 563 NV 564
           ++
Sbjct: 172 DM 173


>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g77360, mitochondrial; Flags: Precursor
 gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 153/333 (45%), Gaps = 24/333 (7%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           FC  +R++ + + +  A+ A++  +K+   PN+     ++       +  K++ ++E++R
Sbjct: 171 FCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMR 230

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            +  T +   ++ L+       +L    EV++ M   G   D+ +Y+I++   C AG   
Sbjct: 231 DR-FTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRV- 288

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
              E  G V+ ++   + K   F YS +V  +      + A+    +M  +G+  +   +
Sbjct: 289 --DEALGIVRSMDP-SICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVF 345

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           +SLI A   A  ++    + +EM   G  PNS+ CNI+L+  +E  + D AF +FR    
Sbjct: 346 NSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFR---- 401

Query: 462 SKTQVALGEDYDGNTDRISNM-EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
            K       D D  T  I    E K+ ++         +  +    K+  F P+  T+++
Sbjct: 402 -KMIKVCEPDADTYTMVIKMFCEKKEMET--------ADKVWKYMRKKGVF-PSMHTFSV 451

Query: 521 LMKACCTDYYRVKA--LMNEMRTVGLSPNHISW 551
           L+   C +    KA  L+ EM  +G+ P+ +++
Sbjct: 452 LINGLCEERTTQKACVLLEEMIEMGIRPSGVTF 484


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 127/285 (44%), Gaps = 26/285 (9%)

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E++  + +  +IY +N L+    N   L   ++++   +  G+++++ +Y I+++  C A
Sbjct: 547 EEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKA 606

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
                 + ++ E+  L  K  ++L+   Y+ I+K          AL++ E+M S G+ PN
Sbjct: 607 NRIEDVENLFNEL--LSKK--MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPN 662

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             T+SSLI+   N GLVE A HL +EM + G  PN  C   L+    +  Q D A   + 
Sbjct: 663 CATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWL 722

Query: 458 ---SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
              S+ +   +       DG   ++ NME  +   I                K     P 
Sbjct: 723 EMISFNIHPNKFTYTVMIDGYC-KLGNMEKANNLLIKM--------------KESGIVPD 767

Query: 515 TTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
             TYN+L    C   D      + ++M T GL  + I++T L+  
Sbjct: 768 VVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 812



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 127/293 (43%), Gaps = 30/293 (10%)

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           V A++ +   EV++ M + G   D+ S+  ++ A C  G    A E++ +++ L     +
Sbjct: 220 VKANEFEKCCEVFRVMSE-GACPDVFSFTNVINALCKGGKMENAIELFMKMEKLG----I 274

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             +V TY+ I+           A ++KE M   GV PN  T+ +LIN        ++  H
Sbjct: 275 SPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNH 334

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL---FRSWTLSKTQVALGEDYDG-- 474
           + +EM+ +G  PN    N L+    +    + A ++     S  ++ T V L     G  
Sbjct: 335 VLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFC 394

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFD---KRF---------------SFKPTTT 516
            +D+I + E+  ++ +++  +  P++ YS      K+F               +F+P+  
Sbjct: 395 KSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDL 454

Query: 517 TYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              +L+   C D   ++A  L   +   G   + ++   LI    G+G +  A
Sbjct: 455 LLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEA 507



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 18/260 (6%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E++  + + G  A   + N L+   C AG    A  I   VK +  +G L +D  TY+ +
Sbjct: 474 ELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRI---VKEMLERG-LPMDRITYNAL 529

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  F +    +   +++E+M   G+ P+  T++ L+    N G ++ A+ L++E   +G 
Sbjct: 530 ILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGL 589

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
             N     I+++   +A + +    LF      K ++      +     I    H    +
Sbjct: 590 ISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMEL------NSIVYNIIIKAHCQNGN 643

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPN 547
           +      + N       K     P   TY+ L+   C        K L++EMR  G  PN
Sbjct: 644 VAAALQLLENM------KSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPN 697

Query: 548 HISWTILIDACGGSGNVEGA 567
            + +T LI      G ++ A
Sbjct: 698 VVCYTALIGGYCKLGQMDTA 717



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 132/309 (42%), Gaps = 22/309 (7%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV 320
           VCG+C  G ++++  ++  L  +    +    N+L++    A  L     + K M + G+
Sbjct: 460 VCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGL 519

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             D  +YN L+   C  G     +  +   + +  +G+ + D++TY+ +++   +     
Sbjct: 520 PMDRITYNALILGFCNEGK---VEGCFRLREEMTKRGI-QPDIYTYNFLLRGLCNVGKLD 575

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A+K+ ++  ++G+  N  T+  ++     A  +E   +LF E+L    E NS   NI++
Sbjct: 576 DAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIII 635

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
           +A  +      A +L  +    K++  L      N    S++ H     + N        
Sbjct: 636 KAHCQNGNVAAALQLLENM---KSKGILP-----NCATYSSLIH----GVCNIGLVEDAK 683

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
           H     ++  F P    Y  L+   C        ++   EM +  + PN  ++T++ID  
Sbjct: 684 HLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGY 743

Query: 559 GGSGNVEGA 567
              GN+E A
Sbjct: 744 CKLGNMEKA 752



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 70/185 (37%), Gaps = 49/185 (26%)

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           ++S G  P+  +++++INA    G +E A+ LF +M + G  PN    N ++    +  +
Sbjct: 234 VMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGR 293

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
            D AF L    T+   Q                                           
Sbjct: 294 LDNAFELKEKMTVKGVQ------------------------------------------- 310

Query: 509 FSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
               P   TY  L+        + +V  +++EM   G +PN + +  LID     GN+EG
Sbjct: 311 ----PNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEG 366

Query: 567 ALQCR 571
           AL+ +
Sbjct: 367 ALKIK 371


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 161/379 (42%), Gaps = 37/379 (9%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAI 278
           ++++   +  FGK  ++    + +D  K+    P+     ++I   G+C  G  +++R +
Sbjct: 357 NVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIH--GLCQAGKVVEARKL 414

Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           + ++ S+ +  +   + +L++    A ++K    ++  M + G+  ++ +Y  L+   C 
Sbjct: 415 FSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCK 474

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G   +A E+  E   +  KG L+ +V TY+ ++         + A+K+ E+M  AG  P
Sbjct: 475 CGEVDIANELLHE---MSEKG-LQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFP 530

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +TIT++++++A    G + +A  L   ML  G +P     N+L+     +   +   RL 
Sbjct: 531 DTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLI 590

Query: 457 RSWTLSK-------------TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
           + W L K              Q  +  +     +    M  +     TNT N +   H  
Sbjct: 591 K-WMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCK 649

Query: 504 SFDKRFS-----------FKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHIS 550
           + + + +           F  T  +YN L+K       +   + L  EMRT G       
Sbjct: 650 ARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEI 709

Query: 551 WTILIDACGGSGNVEGALQ 569
           + I +D     GN E  L+
Sbjct: 710 YDIFVDVNYEEGNWENTLE 728



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 153/367 (41%), Gaps = 69/367 (18%)

Query: 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTI 262
           N PDV   + Y+ IV      +C  V + GK   L+  L+     +K L  PN Y   +I
Sbjct: 283 NVPDV---VSYSVIVDG----YCQ-VEQLGKVLKLMEELQ-----RKGLK-PNQYTYNSI 328

Query: 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE--VYKNMQKLGV 320
           I      G  +++  +   +++Q +  +  V+ +L++        ++E  ++  M++  +
Sbjct: 329 ISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKI 388

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
           + D  +Y  ++   C AG  V A++++ E   + +KG LK D  TY+ ++  +  A   +
Sbjct: 389 VPDFVTYTSMIHGLCQAGKVVEARKLFSE---MLSKG-LKPDEVTYTALIDGYCKAGEMK 444

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A  +   M+  G+TPN +T+++L++     G V+ A  L  EM + G +PN    N L+
Sbjct: 445 EAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALI 504

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
               +    ++A +L     L+                                      
Sbjct: 505 NGLCKVGNIEQAVKLMEEMDLA-------------------------------------- 526

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
                     F P T TY  +M A C   +  +   L+  M   GL P  +++ +L++  
Sbjct: 527 ---------GFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGF 577

Query: 559 GGSGNVE 565
             SG +E
Sbjct: 578 CMSGMLE 584



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 112/270 (41%), Gaps = 19/270 (7%)

Query: 301 NAHD-LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           N+ D ++    V++   ++GV  +  SYNI+L   C  G     +E +  +  +E +G +
Sbjct: 228 NSFDGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGK---VKEAHSLLIQMEFRGNV 284

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             DV +YS IV  +   +     LK+ E++   G+ PN  T++S+I+     G V +A  
Sbjct: 285 P-DVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQ 343

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           +   M      P++     L+    ++      ++LF      K    +  D+   T  I
Sbjct: 344 VLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKK----IVPDFVTYTSMI 399

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMN 537
             +    K         V      S       KP   TY  L+   C   +     +L N
Sbjct: 400 HGLCQAGK--------VVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHN 451

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           +M   GL+PN +++T L+D     G V+ A
Sbjct: 452 QMVEKGLTPNVVTYTALVDGLCKCGEVDIA 481



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 6/204 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P+     TI+D     G+  K+  +   +  + +   I  FN LMN    +  L+    +
Sbjct: 530 PDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERL 589

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            K M   G+M +  ++N L+K  C+  N     EIY   K + A+GV+  D  TY+ ++K
Sbjct: 590 IKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIY---KGMHAQGVVP-DTNTYNILIK 645

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               A+  + A  + ++M+  G +    +++SLI         E+A  LFEEM   G   
Sbjct: 646 GHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIA 705

Query: 432 NSQCCNILLQACVEACQFDRAFRL 455
             +  +I +    E   ++    L
Sbjct: 706 EKEIYDIFVDVNYEEGNWENTLEL 729


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 134/333 (40%), Gaps = 59/333 (17%)

Query: 245 DASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--V 300
           D  K     P+ Y   ++I   G+C  G   ++  I E ++   +      +N+L++   
Sbjct: 295 DIMKNRGVEPDSYTYGSLI--SGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYC 352

Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
           N  DL         M +  ++  +++YN+L+ A  L G      E  G +K +   G++ 
Sbjct: 353 NKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKM---DEADGMIKDMGDSGIVP 409

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            D  TY+ ++  +      + A  + ++M+S G+ P  +T++SLI   +    ++ A  L
Sbjct: 410 -DSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDL 468

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
           FE++++ G  P+    N L+         DRAF L +                       
Sbjct: 469 FEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEM--------------------- 507

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNE 538
                DK++I                      P   TYN LM+  C +      + L+ E
Sbjct: 508 -----DKRNIV---------------------PDEVTYNTLMQGRCREGKVEEARELLKE 541

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           M+  G+ P+HIS+  LI      G++  A   R
Sbjct: 542 MKRRGIRPDHISYNTLISGYSKRGDINDAFTIR 574



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 128/298 (42%), Gaps = 43/298 (14%)

Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           C D MK + +   + + N  L+++     + +N  +  + L  Y  M +L + + + ++N
Sbjct: 188 CFDMMKEKGVVPKIETFNAMLSLF-----LKLNQTETVWVL--YAEMFRLKIKSTVYTFN 240

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           I++   C  G    A++  G +++L   GV K +V TY+T++  +      + A  V + 
Sbjct: 241 IMINVLCKEGKLKKAKDFIGSMENL---GV-KPNVVTYNTVIHGYCSRGRVEGARMVLDI 296

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M + GV P++ T+ SLI+     G +E+A  + E+M + G  P +   N L+        
Sbjct: 297 MKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGD 356

Query: 449 FDRAFRLFRSWTLSKTQVALGEDY---------DGNTDRISNMEHKDKQSITNTPNFVPN 499
             +AF  +R   + +  +     Y         +G  D    M      S       VP+
Sbjct: 357 LVKAFG-YRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDS-----GIVPD 410

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILI 555
           S                TYNIL+   C      KA  L +EM + G+ P  +++T LI
Sbjct: 411 S---------------ITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLI 453



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 109/265 (41%), Gaps = 24/265 (9%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            E +  M++ GV+  + ++N +L        T     +Y E+  L+ K      V+T++ 
Sbjct: 186 FECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKST----VYTFNI 241

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++ V       + A      M + GV PN +T++++I+   + G VE A  + + M   G
Sbjct: 242 MINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRG 301

Query: 429 CEPNSQCCNILLQACVEACQFDRA---FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
            EP+S     L+    +  + + A       +   L  T V      DG           
Sbjct: 302 VEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDG----------- 350

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVG 543
                 N  + V    Y     R +  PT +TYN+L+ A   +    +A  ++ +M   G
Sbjct: 351 ----YCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSG 406

Query: 544 LSPNHISWTILIDACGGSGNVEGAL 568
           + P+ I++ ILI+     GN + A 
Sbjct: 407 IVPDSITYNILINGYCRCGNAKKAF 431



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 89/190 (46%), Gaps = 6/190 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + + + +    K+  + +A   ++   +  +SP++ +   +ID     G+  ++ A+ ++
Sbjct: 447 VTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKE 506

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +N+  +   +N+LM     + K     E+ K M++ G+  D  SYN L+      G+
Sbjct: 507 MDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGD 566

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  I  E+  +     L     TY+ +++     +   +A ++ ++M+S G+TP+  
Sbjct: 567 INDAFTIRDEMLSIGFNPTL----LTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDS 622

Query: 400 TWSSLINACA 409
           T+ SLI    
Sbjct: 623 TYFSLIEGIG 632


>gi|298714808|emb|CBJ25707.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1273

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 155/366 (42%), Gaps = 43/366 (11%)

Query: 223  LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
            L CN   ++ K  +++S +      K     PN      +I +CG  GD  ++ A  E  
Sbjct: 725  LACN---DWDKAEEILSMM------KSRAIKPNEVTYTELISICGRSGDVHQALAQLERA 775

Query: 283  RSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLG---VMADMASYNILLKACCLA 337
            R   ++ N+  +N+ ++V A   ++   L + + MQ  G   +  D+ ++N ++ AC  A
Sbjct: 776  RRNGLSPNLINYNACVDVCAKTGEVDRALALLEQMQTSGDPALTPDLVTFNSVINACAKA 835

Query: 338  GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            G+  L   ++ E+K   A G LK D+ +++  +         + AL + + M S G+ P+
Sbjct: 836  GDWALTLWLFSEIK---AAG-LKADIQSFNAALDACTKGSNPEAALALLKRMKSQGLEPD 891

Query: 398  TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             I++ S I AC   G    A+ L  +M Q G EP     N++++       +  A  L +
Sbjct: 892  AISYQSAILACRAGGDGASAVMLLRDMEQQGLEPRDADYNLVIETVGREGDWAGALELLK 951

Query: 458  SWTLSKTQ-------VALGEDYDGNTDRISNMEHKDKQSITNTPN-FVPNSHYSSFDK-- 507
            S               A+G    G    ++    ++ + +  TP  F  NS  S   +  
Sbjct: 952  SMKAEGIAADAYTYGAAVGACAKGRNPDLARALLEEMKDLGLTPTRFCWNSIISVHSRTG 1011

Query: 508  ------------RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHIS-WT 552
                        + S     TT++ +M  C    D+     L+ EM   GL PN    +T
Sbjct: 1012 NTTAAMTLMDEMKQSMPCDETTFSAMMHGCAQTRDWDAAGRLLEEMNAAGLKPNDACYYT 1071

Query: 553  ILIDAC 558
            +L+ AC
Sbjct: 1072 LLVAAC 1077



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 134/338 (39%), Gaps = 40/338 (11%)

Query: 267  GICGDYMKSRAIYE-------DLRSQNVTLNIYVFNS-LMNVNAHDLKFTLEVYKNMQKL 318
            GIC D      ++E       + RSQ ++ NI  F + +  +  +D     E+   M+  
Sbjct: 684  GICMDAYAKAGLWEKALELLAEARSQGLSPNIVTFTTAVRGLACNDWDKAEEILSMMKSR 743

Query: 319  GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
             +  +  +Y  L+  C  +G+     +   +++     G L  ++  Y+  V V A    
Sbjct: 744  AIKPNEVTYTELISICGRSGDV---HQALAQLERARRNG-LSPNLINYNACVDVCAKTGE 799

Query: 379  WQMALKVKEDMLSAG---VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
               AL + E M ++G   +TP+ +T++S+INACA AG     + LF E+  AG + + Q 
Sbjct: 800  VDRALALLEQMQTSGDPALTPDLVTFNSVINACAKAGDWALTLWLFSEIKAAGLKADIQS 859

Query: 436  CNILLQACVEACQFDRAFRLF---RSWTLSKTQVA---------LGEDYDGNTDRISNME 483
             N  L AC +    + A  L    +S  L    ++          G D       + +ME
Sbjct: 860  FNAALDACTKGSNPEAALALLKRMKSQGLEPDAISYQSAILACRAGGDGASAVMLLRDME 919

Query: 484  HKDKQSITNTPNFVPNSHYSSFD-----------KRFSFKPTTTTYNILMKACCTDYYR- 531
             +  +      N V  +     D           K         TY   + AC       
Sbjct: 920  QQGLEPRDADYNLVIETVGREGDWAGALELLKSMKAEGIAADAYTYGAAVGACAKGRNPD 979

Query: 532  -VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
              +AL+ EM+ +GL+P    W  +I     +GN   A+
Sbjct: 980  LARALLEEMKDLGLTPTRFCWNSIISVHSRTGNTTAAM 1017



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 131/318 (41%), Gaps = 53/318 (16%)

Query: 270 GDYMKSRAIYEDLRSQNVT-----LNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMA 322
           GD+  + A+ + +   +VT      ++  FN  M     A + +    V   +Q  G+ A
Sbjct: 619 GDWRNAIALIDVMTRASVTDKDAGPDVVCFNYAMTACAKAGECELAHRVLSRIQACGLAA 678

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           ++ SY I + A   AG    A E+  E +   ++G L  ++ T++T V+  A    W  A
Sbjct: 679 NLVSYGICMDAYAKAGLWEKALELLAEAR---SQG-LSPNIVTFTTAVRGLA-CNDWDKA 733

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            ++   M S  + PN +T++ LI+ C  +G V QA+   E   + G  PN    N  +  
Sbjct: 734 EEILSMMKSRAIKPNEVTYTELISICGRSGDVHQALAQLERARRNGLSPNLINYNACVDV 793

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN---TPNFVPN 499
           C +  + DRA  L                       +  M+     ++T    T N V N
Sbjct: 794 CAKTGEVDRALAL-----------------------LEQMQTSGDPALTPDLVTFNSVIN 830

Query: 500 SHYSSFD-----------KRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSP 546
           +   + D           K    K    ++N  + AC   ++     AL+  M++ GL P
Sbjct: 831 ACAKAGDWALTLWLFSEIKAAGLKADIQSFNAALDACTKGSNPEAALALLKRMKSQGLEP 890

Query: 547 NHISWTILIDAC--GGSG 562
           + IS+   I AC  GG G
Sbjct: 891 DAISYQSAILACRAGGDG 908



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/326 (20%), Positives = 125/326 (38%), Gaps = 37/326 (11%)

Query: 262  IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLG 319
            +I+  G  GD+  +  + + ++++ +  + Y + + +   A   +      + + M+ LG
Sbjct: 933  VIETVGREGDWAGALELLKSMKAEGIAADAYTYGAAVGACAKGRNPDLARALLEEMKDLG 992

Query: 320  VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
            +      +N ++      GNT  A  +  E+K       +  D  T+S ++   A  + W
Sbjct: 993  LTPTRFCWNSIISVHSRTGNTTAAMTLMDEMKQ-----SMPCDETTFSAMMHGCAQTRDW 1047

Query: 380  QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
              A ++ E+M +AG+ PN   + +L+ A   AG +  A  L + M + G  P+      L
Sbjct: 1048 DAAGRLLEEMNAAGLKPNDACYYTLLVAACRAGELRLAEGLIKGMRKDGAAPDLYSYTTL 1107

Query: 440  LQACVEACQFDRAFRLFRSWTLSKT-------QVALGEDYDGNTD---------RISNME 483
              AC     +  A RL  S  +            AL     G  +         R   +E
Sbjct: 1108 SAACGRFHDWRMALRLIESMKIDGIPATKKIYAAALAACGRGEAEIAEILLEMMRSQGVE 1167

Query: 484  HKDKQSITNTPNFVPNSHYSSFDKRFSF---------KPTTTTYNILMKAC--CTDYYRV 532
              D   +  +   V        DK              P    +N  ++AC    D    
Sbjct: 1168 LDD---VGRSHALVAFGRGGRPDKALVLMDDIREKGPPPNLQCFNGAIEACALADDIDGG 1224

Query: 533  KALMNEMRTVGLSPNHISWTILIDAC 558
             +L+ EM   G+ PN +S+  L+ AC
Sbjct: 1225 ISLLAEMGRAGIVPNGVSFRSLVSAC 1250



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 88/219 (40%), Gaps = 26/219 (11%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-----PNTITWSSLINACANAGLV 414
           +L   +YS  +K  A    W+ A+ + + M  A VT     P+ + ++  + ACA AG  
Sbjct: 602 RLTSASYSPALKSAAQVGDWRNAIALIDVMTRASVTDKDAGPDVVCFNYAMTACAKAGEC 661

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGED 471
           E A  +   +   G   N     I + A  +A  +++A  L    RS  LS   V     
Sbjct: 662 ELAHRVLSRIQACGLAANLVSYGICMDAYAKAGLWEKALELLAEARSQGLSPNIVTF--- 718

Query: 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDY 529
               T  +  +   D         +       S  K  + KP   TY  L+  C    D 
Sbjct: 719 ----TTAVRGLACND---------WDKAEEILSMMKSRAIKPNEVTYTELISICGRSGDV 765

Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           ++  A +   R  GLSPN I++   +D C  +G V+ AL
Sbjct: 766 HQALAQLERARRNGLSPNLINYNACVDVCAKTGEVDRAL 804



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 7/229 (3%)

Query: 217  VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
            +P  +  F   +    + RD  +A R  +        PN     T++      G+   + 
Sbjct: 1027 MPCDETTFSAMMHGCAQTRDWDAAGRLLEEMNAAGLKPNDACYYTLLVAACRAGELRLAE 1086

Query: 277  AIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
             + + +R      ++Y + +L       HD +  L + ++M+  G+ A    Y   L AC
Sbjct: 1087 GLIKGMRKDGAAPDLYSYTTLSAACGRFHDWRMALRLIESMKIDGIPATKKIYAAALAAC 1146

Query: 335  CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
               G   +A+ +   ++ + ++GV +LD    S  +  F        AL + +D+   G 
Sbjct: 1147 GR-GEAEIAEIL---LEMMRSQGV-ELDDVGRSHALVAFGRGGRPDKALVLMDDIREKGP 1201

Query: 395  TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
             PN   ++  I ACA A  ++  + L  EM +AG  PN      L+ AC
Sbjct: 1202 PPNLQCFNGAIEACALADDIDGGISLLAEMGRAGIVPNGVSFRSLVSAC 1250



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/79 (22%), Positives = 37/79 (46%)

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           +   ++     + W  A+ +  ++  AG+ P   T+S +I  C  +G +E+A  + + M+
Sbjct: 103 FERAIQALGAGRKWAEAVGLMSEVEEAGMVPGEDTYSGVIRDCCKSGRIEEATRMLDAMI 162

Query: 426 QAGCEPNSQCCNILLQACV 444
             G +P     N +L  C 
Sbjct: 163 SKGYKPPQGVVNTVLDTCT 181


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 127/285 (44%), Gaps = 26/285 (9%)

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E++  + +  +IY +N L+    N   L   ++++   +  G+++++ +Y I+++  C A
Sbjct: 524 EEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKA 583

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
                 + ++ E+  L  K  ++L+   Y+ I+K          AL++ E+M S G+ PN
Sbjct: 584 NRIEDVENLFNEL--LSKK--MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPN 639

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             T+SSLI+   N GLVE A HL +EM + G  PN  C   L+    +  Q D A   + 
Sbjct: 640 CATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWL 699

Query: 458 ---SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
              S+ +   +       DG   ++ NME  +   I                K     P 
Sbjct: 700 EMISFNIHPNKFTYTVMIDGYC-KLGNMEKANNLLIKM--------------KESGIVPD 744

Query: 515 TTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
             TYN+L    C   D      + ++M T GL  + I++T L+  
Sbjct: 745 VVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 789



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 127/293 (43%), Gaps = 30/293 (10%)

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           V A++ +   EV++ M + G   D+ S+  ++ A C  G    A E++ +++ L     +
Sbjct: 197 VKANEFEKCCEVFRVMSE-GACPDVFSFTNVINALCKGGKMENAIELFMKMEKLG----I 251

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             +V TY+ I+           A ++KE M   GV PN  T+ +LIN        ++  H
Sbjct: 252 SPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNH 311

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL---FRSWTLSKTQVALGEDYDG-- 474
           + +EM+ AG  PN    N L+    +    + A ++     S  ++ T V L     G  
Sbjct: 312 ILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFC 371

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFD---KRF---------------SFKPTTT 516
            +D+I + E+  ++ +++  +  P++ YS      K+F               +F+P+  
Sbjct: 372 KSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDL 431

Query: 517 TYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              +L+   C D   ++A  L   +   G   + ++   LI    G+G +  A
Sbjct: 432 LLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEA 484



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 18/260 (6%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E++  + + G  A   + N L+   C AG    A  I   VK +  +G L +D  TY+ +
Sbjct: 451 ELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRI---VKEMLERG-LPMDRITYNAL 506

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  F +    +   +++E+M   G+ P+  T++ L+    N G ++ A+ L++E   +G 
Sbjct: 507 ILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGL 566

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
             N     I+++   +A + +    LF      K ++      +     I    H    +
Sbjct: 567 ISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMEL------NSIVYNIIIKAHCQNGN 620

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPN 547
           +      + N       K     P   TY+ L+   C        K L++EMR  G  PN
Sbjct: 621 VAAALQLLENM------KSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPN 674

Query: 548 HISWTILIDACGGSGNVEGA 567
            + +T LI      G ++ A
Sbjct: 675 VVCYTALIGGYCKLGQMDTA 694



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 132/309 (42%), Gaps = 22/309 (7%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV 320
           VCG+C  G ++++  ++  L  +    +    N+L++    A  L     + K M + G+
Sbjct: 437 VCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGL 496

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             D  +YN L+   C  G     +  +   + +  +G+ + D++TY+ +++   +     
Sbjct: 497 PMDRITYNALILGFCNEGK---VEGCFRLREEMTKRGI-QPDIYTYNFLLRGLCNVGKLD 552

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A+K+ ++  ++G+  N  T+  ++     A  +E   +LF E+L    E NS   NI++
Sbjct: 553 DAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIII 612

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
           +A  +      A +L  +    K++  L      N    S++ H     + N        
Sbjct: 613 KAHCQNGNVAAALQLLENM---KSKGILP-----NCATYSSLIH----GVCNIGLVEDAK 660

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
           H     ++  F P    Y  L+   C        ++   EM +  + PN  ++T++ID  
Sbjct: 661 HLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGY 720

Query: 559 GGSGNVEGA 567
              GN+E A
Sbjct: 721 CKLGNMEKA 729



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 70/185 (37%), Gaps = 49/185 (26%)

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           ++S G  P+  +++++INA    G +E A+ LF +M + G  PN    N ++    +  +
Sbjct: 211 VMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGR 270

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
            D AF L    T+   Q                                           
Sbjct: 271 LDNAFELKEKMTVKGVQ------------------------------------------- 287

Query: 509 FSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
               P   TY  L+        + +V  +++EM   G +PN + +  LID     GN+EG
Sbjct: 288 ----PNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEG 343

Query: 567 ALQCR 571
           AL+ +
Sbjct: 344 ALKIK 348


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 150/329 (45%), Gaps = 32/329 (9%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTL 309
           PN++    +I+     G   K+R + ED++    + N+  +N+L++    +  +   +  
Sbjct: 221 PNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKA 280

Query: 310 E-VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           + V K M +  V  ++ ++NIL+       N   + +++ E+   +    +K +V +Y++
Sbjct: 281 DAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQD----VKPNVISYNS 336

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++    +      A+ +++ M+SAGV PN IT+++LIN      ++++A+ +F  +   G
Sbjct: 337 LINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQG 396

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD---GNTDRISNMEHK 485
             P ++  N+L+ A  +  + D  F L            +G  Y+       R  N+E  
Sbjct: 397 AVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGT-YNCLIAGLCRNGNIEAA 455

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFK-PTTTTYNILMKACCTDYYRVKA--LMNEMRTV 542
            K                 FD+  S   P   T++ILM+  C      KA  L+ EM  +
Sbjct: 456 KKL----------------FDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKM 499

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P H+++ I++      GN++ A   R
Sbjct: 500 GLKPRHLTYNIVMKGYCKEGNLKAATNMR 528



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 135/331 (40%), Gaps = 39/331 (11%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN+     +ID      +   S  +++++  Q+V  N+  +NSL+N   N   +   + 
Sbjct: 293 SPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAIS 352

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +   M   GV  ++ +YN L+   C       A +++G VK   A    ++    Y+ ++
Sbjct: 353 MRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRM----YNMLI 408

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +           +KE+M   G+ P+  T++ LI      G +E A  LF+++   G  
Sbjct: 409 DAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL- 467

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWT--------LSKTQVALGEDYDGNTDRISNM 482
           P+    +IL++      +  +A  L +  +        L+   V  G   +GN    +NM
Sbjct: 468 PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNM 527

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMR 540
                               +  +K    +    +YN+L++          A  L+NEM 
Sbjct: 528 R-------------------TQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEML 568

Query: 541 TVGLSPNHISWTILIDACGGSG---NVEGAL 568
             GL PN I++ I+ +     G   ++EG L
Sbjct: 569 EKGLVPNRITYEIVKEEMVDQGFVPDIEGHL 599


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 108/219 (49%), Gaps = 6/219 (2%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           AL+  +  ++    P++    T+I  C    +  ++ A++ D+ S     +++ +N++++
Sbjct: 305 ALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMIS 364

Query: 300 VNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
           V       +   E++K ++  G   D  +YN LL A    GNT   ++I  E+     K 
Sbjct: 365 VYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEM----VKR 420

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
               D  TY+TI+ ++        A+++  DM S+G  P+ +T++ LI++   A  VE+A
Sbjct: 421 GFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEA 480

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            ++  EML AG +P     + L+ A  +A + + A   F
Sbjct: 481 ANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETF 519



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 110/241 (45%), Gaps = 7/241 (2%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R DI+  N  +    ++ +L  A+  +   + H   P+++    +I V G C    K+  
Sbjct: 318 RPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEE 377

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++++L S+    +   +NSL+   + +   +   ++ + M K G   D  +YN ++    
Sbjct: 378 LFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYG 437

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    A +IY ++K          D  TY+ ++     A   + A  V  +ML AGV 
Sbjct: 438 KQGRHDQAMQIYRDMK----SSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVK 493

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P   T+S+LI A A AG  E+A   F  M ++G +P+    +++L   +   +  +A  L
Sbjct: 494 PTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGL 553

Query: 456 F 456
           +
Sbjct: 554 Y 554



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 133/293 (45%), Gaps = 22/293 (7%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMADMA 325
           G + K + + + +R +    ++  FN+L+N      A +    L++   +++ G+  D+ 
Sbjct: 263 GRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDII 322

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +YN L+ AC    N   A  ++ +++    +     D++TY+ ++ V+      + A ++
Sbjct: 323 TYNTLISACSRESNLEEAVAVFSDMESHRCQP----DLWTYNAMISVYGRCARARKAEEL 378

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            +++ S G  P+ +T++SL+ A +  G  E+   + EEM++ G   +    N ++    +
Sbjct: 379 FKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGK 438

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
             + D+A +++R    S            N D ++     D     +      N      
Sbjct: 439 QGRHDQAMQIYRDMKSSGR----------NPDAVTYTVLIDSLGKASKVEEAANVMSEML 488

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILID 556
           D     KPT  TY+ L+ A      R +A    N MR  G+ P+ +++++++D
Sbjct: 489 DA--GVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLD 539



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 108/261 (41%), Gaps = 38/261 (14%)

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           A    LA EI+       A+  +   V  Y+ ++ V+A    +    ++ + M   G  P
Sbjct: 228 ANQEALAVEIFAR-----AESSVGDTVQVYNAMMGVYARNGRFSKVKELLDLMRERGCVP 282

Query: 397 NTITWSSLINACANAGLVEQ--AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           + +++++LINA   +G +E   A+ L  E+ ++G  P+    N L+ AC      + A  
Sbjct: 283 DLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVA 342

Query: 455 LFRSWTLSKTQVALGEDYD------GNTDRISNMEHKDKQSITNTPNFVPNS-HYSSFDK 507
           +F      + Q  L   Y+      G   R    E   K+    +  F P++  Y+S   
Sbjct: 343 VFSDMESHRCQPDLW-TYNAMISVYGRCARARKAEELFKE--LESKGFFPDAVTYNSLLY 399

Query: 508 RFS-------------------FKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSP 546
            FS                   F     TYN  I M      + +   +  +M++ G +P
Sbjct: 400 AFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNP 459

Query: 547 NHISWTILIDACGGSGNVEGA 567
           + +++T+LID+ G +  VE A
Sbjct: 460 DAVTYTVLIDSLGKASKVEEA 480



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYST 368
           +++ +M+  GV +    Y  ++   C      L +  +  + H E  G+ L  D+  Y  
Sbjct: 723 QIFSDMRFNGVESSECLYQGMVSVYC---RMDLPETAHHLLYHAEKNGIILDNDISVYID 779

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           IV+ +   K WQ A  +   +       +   W++LI+A A +G  E+A  +F  M++ G
Sbjct: 780 IVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMRDG 839

Query: 429 CEPNSQCCNILLQACV 444
             P     N LLQA +
Sbjct: 840 PSPTVDSVNGLLQALI 855



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/177 (19%), Positives = 82/177 (46%), Gaps = 6/177 (3%)

Query: 254  PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
            P +   R++I        Y ++  ++E+LRS    L+   ++ +M     + D +    +
Sbjct: 1017 PKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENL 1076

Query: 312  YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
               M++ G+   +++ ++L+ +   +G    A+ +   +K+L   GV+ LD   YS+++ 
Sbjct: 1077 LAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENV---LKNLRTTGVV-LDTLPYSSVID 1132

Query: 372  VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
             +     ++  ++   +M  AG+ P+   W+  I A   +    +A+ L   +  AG
Sbjct: 1133 AYLKKGDFKAGIEKLTEMKEAGIEPDHRIWTCFIRAATLSEGTNEAIVLLNALQDAG 1189



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 116/300 (38%), Gaps = 55/300 (18%)

Query: 262  IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLG 319
            I++  G    + K+ ++   LR +   ++  V+N+L++  A     +    ++  M + G
Sbjct: 780  IVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMRDG 839

Query: 320  VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
                + S N LL+A  +        E+Y  ++ L+  G LK+   +    ++ FA A   
Sbjct: 840  PSPTVDSVNGLLQALIVDRRL---NELYVVIQELQDMG-LKISKSSILLTLEAFAQAGNL 895

Query: 380  QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
                K+   M +AG  P    +  ++        V     +  EM +AG +P+ Q CN +
Sbjct: 896  FEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSI 955

Query: 440  LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
            L+  +    F                 ++G  Y               Q I +       
Sbjct: 956  LKLYLGIEDFK----------------SMGIIY---------------QKIQDA------ 978

Query: 500  SHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK--ALMNEMRTVGLSPNHISWTILIDA 557
                      S KP   TYN L+   C D    +  +LMN+MR++GL P   ++  LI A
Sbjct: 979  ----------SLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITA 1028



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 112/305 (36%), Gaps = 71/305 (23%)

Query: 310  EVYKNMQKLGVMADMASYNILLKACCL----------------AG--------NTVLAQE 345
            ++Y  M+  G    M  Y I+L+  C                 AG        N++L  +
Sbjct: 900  KIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSIL--K 957

Query: 346  IYGEVKHLEAKGV---------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            +Y  ++  ++ G+         LK D  TY+T++ ++   +  +    +   M S G+ P
Sbjct: 958  LYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEP 1017

Query: 397  NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
               T+ SLI A     + EQA  LFEE+   G                   + DRAF   
Sbjct: 1018 KLDTYRSLITAFNKQRMYEQAEELFEELRSNG------------------YKLDRAFYHL 1059

Query: 457  RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS------ 510
                + KT    G D+    + ++ M+    +   +T + +  S+  S     +      
Sbjct: 1060 ----MMKTYRTSG-DHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKN 1114

Query: 511  FKPTTTTYNILMKACCTDYYRVKA-------LMNEMRTVGLSPNHISWTILIDACGGSGN 563
             + T    + L  +   D Y  K         + EM+  G+ P+H  WT  I A   S  
Sbjct: 1115 LRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPDHRIWTCFIRAATLSEG 1174

Query: 564  VEGAL 568
               A+
Sbjct: 1175 TNEAI 1179



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 39/200 (19%), Positives = 86/200 (43%), Gaps = 12/200 (6%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           TII + G  G + ++  IY D++S     +   +  L++    A  ++    V   M   
Sbjct: 431 TIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDA 490

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           GV   + +Y+ L+ A   AG    A+E +  ++    +  +K D   YS ++  F     
Sbjct: 491 GVKPTLHTYSALICAYAKAGKREEAEETFNCMR----RSGIKPDRLAYSVMLDFFLRFNE 546

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-AGCEPNSQCCN 437
            + A+ +  +M+  G TP+   +  +++A     + +    +  +M + +G  P      
Sbjct: 547 MKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDMEELSGMNP-----Q 601

Query: 438 ILLQACVEACQFDRAFRLFR 457
           ++    V+   +D A ++ +
Sbjct: 602 VISSVLVKGGCYDHAAKMLK 621



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/226 (18%), Positives = 96/226 (42%), Gaps = 37/226 (16%)

Query: 254  PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLK----FTL 309
            P++ IC +I+ +     D+     IY+ ++  ++  +   +N+L+ +   D +    F+L
Sbjct: 947  PDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSL 1006

Query: 310  EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK------------------ 351
                 M+ LG+   + +Y  L+ A         A+E++ E++                  
Sbjct: 1007 --MNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTY 1064

Query: 352  -----HLEAKGVLKL--------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
                 H +A+ +L +         + T   ++  +  +   + A  V +++ + GV  +T
Sbjct: 1065 RTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDT 1124

Query: 399  ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
            + +SS+I+A    G  +  +    EM +AG EP+ +     ++A  
Sbjct: 1125 LPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPDHRIWTCFIRAAT 1170


>gi|168049701|ref|XP_001777300.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671276|gb|EDQ57830.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 291

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 99/196 (50%), Gaps = 12/196 (6%)

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           MK +    DL + N  +N+YV   +       L   L ++K M   G+  D+ SY+ILL 
Sbjct: 71  MKQKDCRPDLSTYNTIMNMYVKTDV------GLTKVLSLFKEMCLQGIQPDVVSYDILLA 124

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE---DM 389
           AC    +   AQ I+  +K  + +G+ K  V TY++++ V+A+A  +    ++     +M
Sbjct: 125 ACAPKQHVKEAQRIFDTMK--KRRGI-KPTVVTYTSLITVYANAGIYSSPNQLCPLFGEM 181

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
           ++    PN  T++SLIN+C   G VE+A  +FE M + G +PN    N L+    E  + 
Sbjct: 182 VAEKCQPNVKTFTSLINSCRKGGHVEEAQTIFEAMKEYGVKPNVVTYNALINVYTERGEQ 241

Query: 450 DRAFRLFRSWTLSKTQ 465
           D A R+F     S  Q
Sbjct: 242 DGAQRVFLQMVQSGLQ 257



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 20/222 (9%)

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           ++ +G  +LD   Y+TI+     +    +A K+  DM    V  +T+ ++SL++A   +G
Sbjct: 1   MQLQGWCRLDPHLYTTIIDTLGSSGCLDLAKKIFSDM-DDSVKKDTVLYNSLLHAYCKSG 59

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-CQFDRAFRLFRSWTLSKTQVALGED 471
            VE A  LF  M Q  C P+    N ++   V+      +   LF+   L   Q  +   
Sbjct: 60  QVETANELFNSMKQKDCRPDLSTYNTIMNMYVKTDVGLTKVLSLFKEMCLQGIQPDV-VS 118

Query: 472 YDGNTDRISNMEH-KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK-----AC 525
           YD      +  +H K+ Q I           + +  KR   KPT  TY  L+        
Sbjct: 119 YDILLAACAPKQHVKEAQRI-----------FDTMKKRRGIKPTVVTYTSLITVYANAGI 167

Query: 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            +   ++  L  EM      PN  ++T LI++C   G+VE A
Sbjct: 168 YSSPNQLCPLFGEMVAEKCQPNVKTFTSLINSCRKGGHVEEA 209


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 151/328 (46%), Gaps = 31/328 (9%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           G + DL   + A   +K+ +  PN+    T+ID     G + ++  ++ ++R  N+ L+ 
Sbjct: 387 GGQMDLAFEILAQMPAKRIM--PNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDR 444

Query: 292 YVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             +N+L+++       +  L++ + M  +G+  D+ +YN LL      G     ++++ E
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAE 504

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +K    + VL  ++ TYST++  ++    ++ A++V  +  SAG+  + + +S+LI+A  
Sbjct: 505 MKR---EHVLP-NLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALC 560

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
             GLV  A+ L +EM + G  PN    N ++ A   +   +R+       +L  +  AL 
Sbjct: 561 KNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSADYSNGGSLPFSSSALS 620

Query: 470 E--DYDGN---------TDRISNMEHKD----KQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           E  + +GN         T   +N   KD     Q ++         H      +   KP 
Sbjct: 621 ELTETEGNRVIQLFGQLTSEGNNRMTKDCKEGMQELSCILEVFRKMH------QLEIKPN 674

Query: 515 TTTYNILMKAC--CTDYYRVKALMNEMR 540
             T++ ++ AC  C  +     L+ E+R
Sbjct: 675 VVTFSAILNACSRCNSFEDASMLLEELR 702



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 151/353 (42%), Gaps = 33/353 (9%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   +  +G+      A+  +++ K++   PN+     +ID CG  G   K  A + D  
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEM 330

Query: 284 SQN-VTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            +N V  +   FNSL+ V +     +    ++  M    +  D+ SYN LL A C  G  
Sbjct: 331 QRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQM 390

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
            LA EI   +  + AK ++  +V +YST++  FA A  +  AL +  +M    +  + ++
Sbjct: 391 DLAFEI---LAQMPAKRIMP-NVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVS 446

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---- 456
           +++L++     G  E+A+ +  EM   G + +    N LL    +  ++D   ++F    
Sbjct: 447 YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMK 506

Query: 457 RSWTLSK--TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           R   L    T   L + Y         ME                  +  F K    +  
Sbjct: 507 REHVLPNLLTYSTLIDGYSKGGLYKEAME-----------------VFREF-KSAGLRAD 548

Query: 515 TTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
              Y+ L+ A C +     A  L++EM   G+SPN +++  +IDA G S  +E
Sbjct: 549 VVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATME 601



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/213 (19%), Positives = 90/213 (42%), Gaps = 19/213 (8%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           +GK+       + +   K+    PN+    T+ID     G Y ++  ++ + +S  +  +
Sbjct: 489 YGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRAD 548

Query: 291 IYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLA----------- 337
           + ++++L++    +  +   + +   M K G+  ++ +YN ++ A   +           
Sbjct: 549 VVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSADYSN 608

Query: 338 -GNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMA----LKVKEDMLS 391
            G+   +     E+   E   V++L    T     ++  D K         L+V   M  
Sbjct: 609 GGSLPFSSSALSELTETEGNRVIQLFGQLTSEGNNRMTKDCKEGMQELSCILEVFRKMHQ 668

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
             + PN +T+S+++NAC+     E A  L EE+
Sbjct: 669 LEIKPNVVTFSAILNACSRCNSFEDASMLLEEL 701


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 122/273 (44%), Gaps = 41/273 (15%)

Query: 222 ILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           +++ + +R F   G+K D     + +    +    P++ +  T +D     GD  K RAI
Sbjct: 497 VVYTSLIRNFFMHGRKED---GHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAI 553

Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           +ED++      ++  ++ L++    A   + T  ++  M++ G   D  +YN ++   C 
Sbjct: 554 FEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCK 613

Query: 337 AGNTVLAQEIYGEVK--------------------------------HLEAKGVLKLDVF 364
           +G    A E+  E+K                                  ++KG+ +L+V 
Sbjct: 614 SGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGI-ELNVI 672

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            YS+++  F        A  + E+M+  G+TPN  TW+SL++A   A  + +A+  F+ M
Sbjct: 673 VYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSM 732

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +  C PN+   +IL+       ++++AF  ++
Sbjct: 733 KEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQ 765



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 115/255 (45%), Gaps = 15/255 (5%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP     + + +    K   L  A   ++ +K      N+ +  ++ID  G  G   ++ 
Sbjct: 632 VPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAY 691

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            I E++  + +T N+Y +NSLM+  V A ++   L  +++M+++    +  +Y+IL+   
Sbjct: 692 LILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGL 751

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C       A   + E++    K  L  +V TY+T++   A       A  + E   + G 
Sbjct: 752 CRVQKYNKAFVFWQEMQ----KQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGG 807

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-----CVEACQF 449
           TP+  ++++LI   ++A    +A H+FEE    GC  N + C  LL A     C+E    
Sbjct: 808 TPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLLDALNKAECLEQAAV 867

Query: 450 ----DRAFRLFRSWT 460
               +   R F  WT
Sbjct: 868 VGFGENTVRHFFQWT 882



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/421 (22%), Positives = 178/421 (42%), Gaps = 51/421 (12%)

Query: 38  FPLASSSSLSSIPTVHSSQTALLSTVRRDLSSR---------------NDYYADMASKLA 82
           F LASS++ S  P    +  A+L  +  DL++                N   AD+ S L 
Sbjct: 100 FFLASSAA-SPHPLPADAYNAVLPFLSHDLAAMEKVLEEMSVLGYGVPNPACADLVSALV 158

Query: 83  KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142
           +  RL++     E V+ +   + KF    S   V  G +   R+   +  + +L+++ E+
Sbjct: 159 RTRRLDD----AERVIAAMRRL-KFRPAFSAYTVLIGAMAEARQP--ERALELLRQMQEV 211

Query: 143 GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202
           G          G  L     + L   G VE   G + +++E +     L+ +  +  +C+
Sbjct: 212 GYE-------VGVPLFTTLVRALAREGRVE---GALALVDEVKGSC--LEPDIVLYNVCI 259

Query: 203 N----KPDVNLAIRY-----ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS 253
           +      +V++A ++     +  +   D+ + + +    K   L  A   +   +   + 
Sbjct: 260 DCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAV 319

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P  Y   T+I   G  G +  +  + + L+ +    ++  FNS++       K    L +
Sbjct: 320 PCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTL 379

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M+K     + ++YNI++   C+AG    A  I  E++H      L  ++ T + +V 
Sbjct: 380 FEAMKK-DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEH----AGLFPNLLTVNIMVD 434

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               AK ++ A ++ E     G  PN++T+ SLI+     G V+ A  LFE ML  G   
Sbjct: 435 RLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNA 494

Query: 432 N 432
           N
Sbjct: 495 N 495



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 105/243 (43%), Gaps = 10/243 (4%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           V  F K   L  A    +  K     P +    +IID         ++  ++E+ +S+ +
Sbjct: 608 VDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGI 667

Query: 288 TLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            LN+ V++SL++    V   D  +   + + M K G+  ++ ++N L+ A   A     A
Sbjct: 668 ELNVIVYSSLIDGFGKVGRIDEAYL--ILEEMMKKGLTPNVYTWNSLMDALVKAEEINEA 725

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
              +  +K ++       + +TYS ++      + +  A    ++M   G+ PN +T+++
Sbjct: 726 LICFQSMKEMKCSP----NTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTT 781

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           +I   A  G +  A  LFE     G  P++   N L++    A +   A+ +F    L  
Sbjct: 782 MIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKG 841

Query: 464 TQV 466
            ++
Sbjct: 842 CRI 844



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 147/398 (36%), Gaps = 72/398 (18%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           + Y   VP    LF   VR   ++  +  AL   D  K     P++ +    ID  G  G
Sbjct: 211 VGYEVGVP----LFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAG 266

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN 328
           +   +   + +L+SQ +  +   + S++ V   A  L    E++  M+    +    +YN
Sbjct: 267 NVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYN 326

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK---------------------LDVF--- 364
            ++     AG     +  Y  +  L+ +G +                      L +F   
Sbjct: 327 TMIMGYGSAGQF---ENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAM 383

Query: 365 ---------TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
                    TY+ I+ +   A   + A  ++++M  AG+ PN +T + +++    A   E
Sbjct: 384 KKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFE 443

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
            A  +FE   Q GC PNS     L+    +    D A+RLF +         L   ++ N
Sbjct: 444 PAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENM--------LDTGHNAN 495

Query: 476 ----TDRISNM----EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC-- 525
               T  I N       +D   I    N            R   +P  T  N  M     
Sbjct: 496 PVVYTSLIRNFFMHGRKEDGHKIFKEMN------------RRGCQPDLTLLNTYMDCVFK 543

Query: 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
             D  + +A+  +++  G  P+  S++ILI     +G 
Sbjct: 544 AGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQ 581


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 150/319 (47%), Gaps = 27/319 (8%)

Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----NAHDLKFTLEVYKNM 315
           I V G+C  G   ++  + ED++   V+ N+  +N+L++          +     + K M
Sbjct: 160 IVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEM 219

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
              G+  +  +YNIL+   C   N   A  ++GE   ++ +G L+ +V TY+ ++     
Sbjct: 220 VAKGICPNEVTYNILIDGFCKDENVSGAMRVFGE---MQRQG-LRPNVVTYNILINGLCS 275

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
                 A+ +++ M+S+ + PN +T + LIN       V +A++LF +M + G +PN+  
Sbjct: 276 DGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMT 335

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK-DKQSITNTP 494
              L+ A  +  + + AF L+ +  + +        Y+     I+ +  K D ++  +  
Sbjct: 336 YTTLIDAYCKDGRMEDAFALY-NMMIDRGIFPEVSTYNC---LIAGLCRKGDVKAARSLM 391

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWT 552
           N + +   S+            TYNIL+ + C      KA  L++EM   GL+P+H+++ 
Sbjct: 392 NEMVSKKLSA---------DVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYN 442

Query: 553 ILIDACGGSGNVEGALQCR 571
            L+D     GN+  AL  R
Sbjct: 443 TLMDGYCREGNLRAALIVR 461



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 76/355 (21%), Positives = 132/355 (37%), Gaps = 80/355 (22%)

Query: 253 SPNMYICRTIIDVCGIC-----GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--L 305
           SPN+    T+ID  G C     G   K+ AI +++ ++ +  N   +N L++    D  +
Sbjct: 187 SPNVITYNTLID--GYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENV 244

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE----------VKH--- 352
              + V+  MQ+ G+  ++ +YNIL+   C  G    A  +  +          V H   
Sbjct: 245 SGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVL 304

Query: 353 -------------------LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
                              +E +GV   +  TY+T++  +      + A  +   M+  G
Sbjct: 305 INGFCKNKTVNEAINLFNDMEKQGV-DPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRG 363

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + P   T++ LI      G V+ A  L  EM+      +    NIL+ +  +  +  +A 
Sbjct: 364 IFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAV 423

Query: 454 RLFRSW---TLSKTQVALGEDYDGNTDR---------ISNMEHKDKQSITNTPNFVPNSH 501
           +L        L+ + V      DG              + ME K KQ+            
Sbjct: 424 KLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQA------------ 471

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTIL 554
                          T+N+L+K  C          L+NEM   GL PN  ++ I+
Sbjct: 472 ------------NVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEII 514



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  F K + +  A+  ++  +K    PN     T+ID     G    + A+Y  +  + 
Sbjct: 304 LINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRG 363

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +   +  +N L+       D+K    +   M    + AD+ +YNIL+ + C  G +  A 
Sbjct: 364 IFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAV 423

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           ++  E   +  KG L     TY+T++  +      + AL V+  M   G   N +T + L
Sbjct: 424 KLLDE---MFEKG-LNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVL 479

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
           I      G +E A  L  EML+ G  PN     I+ +  +E
Sbjct: 480 IKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMME 520


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/465 (21%), Positives = 195/465 (41%), Gaps = 54/465 (11%)

Query: 132 VVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL 191
           +V ++K L++ G     +F      L  N     LD   +E+ V ++    ++ +  K L
Sbjct: 146 LVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHHVIEILVRILGRESQYSVAAKLL 205

Query: 192 DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL 251
           D+        +   D  L +R           +   +  + +      A+  ++  K+  
Sbjct: 206 DK--------IPLQDYMLDVR----------AYTTILHAYSRTGKYEKAINLFERMKEMG 247

Query: 252 SSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFT 308
            SP +     I+DV G  G  + K   + E++RS+ +  + +  +++++  A +  L+  
Sbjct: 248 PSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREA 307

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            + +  ++  G      +YN LL+    AG    A  +  E++          D  TY+ 
Sbjct: 308 KDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPA----DSVTYNE 363

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +V  +A A + + A  V E M   GV PN IT++++I+A   AG  ++A+ LF  M +AG
Sbjct: 364 LVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAG 423

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRL---------FRSWTLSKTQVALGEDYDGNTDRI 479
           C PN+   N +L    +  + +   ++         F +     T +AL    +   D+ 
Sbjct: 424 CVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCG--NKGMDKF 481

Query: 480 SNMEHKDKQSITNTPNF-VPNSHYSSFDK---------------RFSFKPTTTTYNILMK 523
            N   ++ +S    P+    N+  S++ +               R  F    TTYN L+ 
Sbjct: 482 VNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLN 541

Query: 524 ACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
           A     D+   + ++++M++ G  P   S+++++      GN  G
Sbjct: 542 ALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLG 586



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 11/199 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +L  NF     K R L  + RA+   KKH   P+M I  +++ +      Y ++  I + 
Sbjct: 609 LLLANF-----KCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQS 663

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    +  ++  +NSLM+  V   +     E+ K ++K  +  D+ SYN ++K  C  G 
Sbjct: 664 IHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKG- 722

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             L QE    +  +  +G+ +  +FTY+T V  +     +     V E M      PN +
Sbjct: 723 --LMQEAVRMLSEMTERGI-RPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRPNEL 779

Query: 400 TWSSLINACANAGLVEQAM 418
           T+  +++    AG   +AM
Sbjct: 780 TFKMVVDGYCRAGKYSEAM 798



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 92/201 (45%), Gaps = 6/201 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE--V 311
           P+  + RT++     C     S   +   +      ++ +FNS++++   +  +     +
Sbjct: 601 PSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGI 660

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            +++ + G+  D+ +YN L+      G    A+EI   +K LE K  LK D+ +Y+T++K
Sbjct: 661 LQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEI---LKTLE-KSQLKPDLVSYNTVIK 716

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F      Q A+++  +M   G+ P   T+++ ++     G+  +   + E M +  C P
Sbjct: 717 GFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRP 776

Query: 432 NSQCCNILLQACVEACQFDRA 452
           N     +++     A ++  A
Sbjct: 777 NELTFKMVVDGYCRAGKYSEA 797



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/316 (17%), Positives = 127/316 (40%), Gaps = 38/316 (12%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           PN     T+ID  G  G   ++  ++  ++      N   +N+++++     +    +++
Sbjct: 391 PNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKM 450

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
             +M+  G   + A++N +L  C   G       ++ E+K        + D  T++T++ 
Sbjct: 451 LCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCG----FEPDRDTFNTLIS 506

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +        A K+  +M  AG      T+++L+NA A  G      ++  +M   G +P
Sbjct: 507 AYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKP 566

Query: 432 NSQCCNILLQACVEACQFDRAFR---------LFRSWTLSKTQVALGEDYDGNTDRISNM 482
                +++LQ   +   +    R         +F SW L +T +            ++N 
Sbjct: 567 TETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLL------------LANF 614

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMR 540
           + +             +    +  K+  +KP    +N ++     +  Y + + ++  + 
Sbjct: 615 KCR---------ALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIH 665

Query: 541 TVGLSPNHISWTILID 556
             GL+P+ +++  L+D
Sbjct: 666 EDGLNPDLVTYNSLMD 681


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 110/211 (52%), Gaps = 6/211 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHD-LKFTLE 310
           +PN+    ++ID     G  +++  +++++  +++  NI  +NSL+N    HD L    +
Sbjct: 323 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQ 382

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M     + D+ +YN L+K  C A       E++ E+      G    +  TY+T++
Sbjct: 383 IFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG----NTVTYNTLI 438

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +    A    MA K+ + M+S GV P+ IT+S L++     G +E+A+ +FE + ++  E
Sbjct: 439 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 498

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           PN    NI+++   +A + +  + LF S +L
Sbjct: 499 PNIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 529



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 139/296 (46%), Gaps = 20/296 (6%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A+ + + ++    +++ + +++N      D+   L + K M+K  + A++  YN ++   
Sbjct: 207 ALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGL 266

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C   +   A +++ +   +E KG+ K DVFTY++++    +   W  A ++  DM+   +
Sbjct: 267 CKYKHMDDAFDLFNK---METKGI-KPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKI 322

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PN +T++SLI+A A  G + +A  LF+EM+Q   +PN    N L+      C  DR   
Sbjct: 323 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLING---FCMHDRLDE 379

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
             + +TL  ++  L +    NT  +     K K+       F   S              
Sbjct: 380 AQQIFTLMVSKDCLPDVVTYNT--LIKGFCKAKRVEEGMELFREMSQR-------GLVGN 430

Query: 515 TTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           T TYN L++      D    + +  +M + G+ P+ I+++IL+D     G +E AL
Sbjct: 431 TVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL 486



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 106/214 (49%), Gaps = 6/214 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P+++   ++I      G +  +  +  D+  + +  N+  FNSL++  A + K     ++
Sbjct: 289 PDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKL 348

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M +  +  ++ +YN L+   C+      AQ+I+     + +K  L  DV TY+T++K
Sbjct: 349 FDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIF---TLMVSKDCLP-DVVTYNTLIK 404

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F  AK  +  +++  +M   G+  NT+T+++LI     AG  + A  +F++M+  G  P
Sbjct: 405 GFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPP 464

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           +    +ILL    +  + ++A  +F     SK +
Sbjct: 465 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 498



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 121/260 (46%), Gaps = 45/260 (17%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYM-KSRAIY 279
           + F + +  F K+  L+ A + +D   +    PN+    ++I+  G C  D + +++ I+
Sbjct: 327 VTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLIN--GFCMHDRLDEAQQIF 384

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
             + S++   ++  +N+L+     A  ++  +E+++ M + G++ +  +YN L++    A
Sbjct: 385 TLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQA 444

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE---------- 387
           G+  +AQ+I+   K + + GV   D+ TYS ++         + AL V E          
Sbjct: 445 GDCDMAQKIF---KKMVSDGVPP-DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPN 500

Query: 388 ---------------------DMLSA----GVTPNTITWSSLINACANAGLVEQAMHLFE 422
                                D+  +    GV PN I ++++I+     GL E+A  LF 
Sbjct: 501 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFR 560

Query: 423 EMLQAGCEPNSQCCNILLQA 442
           EM + G  P+S C N L++A
Sbjct: 561 EMKEDGTLPDSGCYNTLIRA 580



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 133/308 (43%), Gaps = 36/308 (11%)

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVM 321
           D   + G+ +KSR             +I  F+ L++  A   KF   + + + MQ LG+ 
Sbjct: 64  DAVALFGEMVKSRPFP----------SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIP 113

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            +  +Y+ILL   C      LA  + G++  L  +     D+ T S+++  +   K    
Sbjct: 114 HNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEP----DIVTLSSLLNGYCHGKRISE 169

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A+ + + M+  G  P+T+T+++LI+         +A+ L + M+  GC+P+      ++ 
Sbjct: 170 AVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN 229

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              +    D A  L +     K +  +   Y+   D +   +H D               
Sbjct: 230 GLCKRGDIDLALSLLKKMEKGKIEANV-VIYNTIIDGLCKYKHMD-------------DA 275

Query: 502 YSSFDKRFS--FKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILID 556
           +  F+K  +   KP   TYN L+ +C  +Y R      L+++M    ++PN +++  LID
Sbjct: 276 FDLFNKMETKGIKPDVFTYNSLI-SCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLID 334

Query: 557 ACGGSGNV 564
           A    G +
Sbjct: 335 AFAKEGKL 342


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 141/314 (44%), Gaps = 36/314 (11%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMA 322
           G+C  GD  ++  ++ + +++ +  +I V+NSL+        +   L+V   M + G   
Sbjct: 335 GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHP 394

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+ +YNI++   C  GN   A  +  +      KG L  DVFT++T++  +        A
Sbjct: 395 DIQTYNIVINGLCKMGNISDATVVMNDAI---MKGYLP-DVFTFNTLIDGYCKRLKLDSA 450

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           L++ E M   G+ P+TIT++S++N    AG V +    F+EM+  GC PN    NIL++ 
Sbjct: 451 LQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIEN 510

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI-TNTPNFVPNSH 501
              + + + A ++     +  +Q  L               H D  S  T    F  N  
Sbjct: 511 FCRSNKMEEASKVI----VKMSQEGL---------------HPDAVSFNTLIYGFCRNGD 551

Query: 502 ----YSSFDK--RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTI 553
               Y  F K     +  T  T+N L+ A     + +  + + +EM + G   +  ++ +
Sbjct: 552 LEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRV 611

Query: 554 LIDACGGSGNVEGA 567
           LID    + NV+ A
Sbjct: 612 LIDGSCKTANVDRA 625



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 160/403 (39%), Gaps = 38/403 (9%)

Query: 195 FRIVQLCVN-KPDVNLAIRYACIVP-RADILFCNFVREFGKKRDLVSALRAYDASKKHLS 252
            R+   C+  +P  ++A+R    +P R  + +C  V           A + +D       
Sbjct: 126 IRLRSFCLTARP--HIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHV 183

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
            PN+     ++      GD +++  +   +  + +++N++ +N  +     A  L   + 
Sbjct: 184 FPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVR 243

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +   M+   V  D+ +YN L++  C      + QE    ++ +  +G L  D FTY+TI+
Sbjct: 244 LVDGMRAYAV-PDVVTYNTLIRGLC---KKSMPQEAMHYLRRMMNQGCLP-DDFTYNTII 298

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +      Q A ++ +D +  G  P+ +T+ SLIN     G VE+A+ LF E    G +
Sbjct: 299 DGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIK 358

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH-KDKQS 489
           P+    N L++          A ++            + + Y+   + +  M +  D   
Sbjct: 359 PDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDI-QTYNIVINGLCKMGNISDATV 417

Query: 490 ITNT-------PN-FVPNSHYSSFDKR---------------FSFKPTTTTYNILMKACC 526
           + N        P+ F  N+    + KR               +   P T TYN ++   C
Sbjct: 418 VMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLC 477

Query: 527 T--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                  V     EM   G  PN I++ ILI+    S  +E A
Sbjct: 478 KAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEA 520



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/347 (19%), Positives = 131/347 (37%), Gaps = 95/347 (27%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA--------------- 337
           + ++L++   HD     +VY  M   GV  D+ ++ I L++ CL                
Sbjct: 92  IMDALVDAAYHDQAH--KVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPH 149

Query: 338 ----------------GNTVLAQEIYGEVKH-----------------------LEAKGV 358
                           G+T  A++++ ++ H                       LEA  +
Sbjct: 150 RGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLL 209

Query: 359 L--------KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           L         +++FTY+  ++   +A     A+++ + M +  V P+ +T+++LI     
Sbjct: 210 LGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCK 268

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA------CVEACQF--DRAFRLFRSWTLS 462
             + ++AMH    M+  GC P+    N ++          EA +   D  F+ F    ++
Sbjct: 269 KSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVT 328

Query: 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
              +  G   +G+ +R   + ++ +                        KP    YN L+
Sbjct: 329 YCSLINGLCAEGDVERALELFNEAQAK--------------------GIKPDIVVYNSLV 368

Query: 523 KACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           K  C     + AL  MNEM   G  P+  ++ I+I+     GN+  A
Sbjct: 369 KGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDA 415



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/256 (20%), Positives = 104/256 (40%), Gaps = 45/256 (17%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVF 294
           ++ AL+  +   +    P++     +I+  G+C  G+   +  +  D   +    +++ F
Sbjct: 377 ILHALQVMNEMAEEGCHPDIQTYNIVIN--GLCKMGNISDATVVMNDAIMKGYLPDVFTF 434

Query: 295 NSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           N+L++     LK    L++ + M + G+  D  +YN +L   C AG      E + E   
Sbjct: 435 NTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQE--- 491

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +  KG    +  TY+ +++ F  +   + A KV   M   G+ P+ +++++LI      G
Sbjct: 492 MILKGC-HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNG 550

Query: 413 LVEQA-------------------------------MHL----FEEMLQAGCEPNSQCCN 437
            +E A                               MH+    F+EML  G   +S    
Sbjct: 551 DLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYR 610

Query: 438 ILLQACVEACQFDRAF 453
           +L+    +    DRA+
Sbjct: 611 VLIDGSCKTANVDRAY 626



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 101/214 (47%), Gaps = 12/214 (5%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           F   +  + K+  L SAL+  +   ++  +P+     ++++  G+C  G   +    +++
Sbjct: 434 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLN--GLCKAGKVNEVNETFQE 491

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +    N   +N L+     ++ ++   +V   M + G+  D  S+N L+   C  G+
Sbjct: 492 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGD 551

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  ++   + LE KG       T++T++  F+      MA K+ ++MLS G   ++ 
Sbjct: 552 LEGAYLLF---QKLEEKG-YSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSY 607

Query: 400 TWSSLIN-ACANAGLVEQAMHLFEEMLQAGCEPN 432
           T+  LI+ +C  A +    MHL  EM++ G  P+
Sbjct: 608 TYRVLIDGSCKTANVDRAYMHLV-EMIKKGFIPS 640


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 34/264 (12%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I++ + V  + +  D+  A   +   K+    PN+Y    +ID    CG   ++  ++ +
Sbjct: 248 IVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSE 307

Query: 282 LRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC---- 335
           +       N   FNSLM  +V A   +  L+VY  M++LG  AD  SYN L+++ C    
Sbjct: 308 MIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDEN 367

Query: 336 ---------------LAGNTVLAQEIYGEVKHL-EAKGVLKL-----------DVFTYST 368
                          +A N      I+G +  L +  G  ++           +  TY+ 
Sbjct: 368 LDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNI 427

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++++FAD+K   M LK+K++M  + V PN  T+  LI      G    A +L +EM++  
Sbjct: 428 LMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEMVEEK 487

Query: 429 C-EPNSQCCNILLQACVEACQFDR 451
           C +PN      +L+    A Q  +
Sbjct: 488 CLKPNLSIYETVLELLRNAGQLKK 511



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 143/331 (43%), Gaps = 34/331 (10%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           SSP  Y    +ID+ G    +  +  + + ++S+ V + +  F+ L+   V A      +
Sbjct: 141 SSPEPY--NEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAV 198

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
             +  M+  G   D  S++I++ + C       A+  +  +KH       + DV  Y+++
Sbjct: 199 HAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKH-----KFEPDVIVYTSL 253

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           V  +  A     A +V  DM  AGV PN  T+S +I++    G + +A  +F EM+ AGC
Sbjct: 254 VHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGC 313

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDR--- 478
           +PN+   N L++  V+A + ++  +++           T+S   +      D N D    
Sbjct: 314 DPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVK 373

Query: 479 -ISNMEHKDKQSITNTPNFV---------PNSHYSSFDKRFSFK--PTTTTYNILMK--A 524
            +  M  K      +T N +          N  +  + K    K  P T TYNILM+  A
Sbjct: 374 VLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFA 433

Query: 525 CCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
                  V  L  EM    + PN  ++ ILI
Sbjct: 434 DSKSIDMVLKLKKEMDESEVEPNVNTYRILI 464



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 19/241 (7%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           KKR    A   +D S KH   P++ +  +++      GD  K+  ++ D++   V  N+Y
Sbjct: 225 KKRRASEAELFFD-SLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVY 283

Query: 293 VFNSLMN--------VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
            ++ +++          AHD      V+  M   G   +  ++N L++    AG T    
Sbjct: 284 TYSIVIDSLCRCGQITRAHD------VFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVL 337

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           ++Y ++K L        D  +Y+ +++     +    A+KV + M+  GV PN  T++S+
Sbjct: 338 QVYNQMKRLGCAA----DTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSI 393

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
               A    V  A  ++ +M +  C PN+   NIL++   ++   D   +L +    S+ 
Sbjct: 394 FGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEV 453

Query: 465 Q 465
           +
Sbjct: 454 E 454


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 139/343 (40%), Gaps = 54/343 (15%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K  DL + +  ++   +    P++    T+ID     GD  ++R ++ D+ S+    N+ 
Sbjct: 49  KSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVV 108

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNMQK--LGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            ++ L+N       +    E+ + M +    V+ ++ +YN  L   C    T  A E+  
Sbjct: 109 TYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMR 168

Query: 349 EVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
            ++     G L++  D  T+ST++           A  V +DM++ G  PN IT+++L+N
Sbjct: 169 SLR----DGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 224

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
               A  +E+A  + E M+  G  P+    ++L+ A  +A + D A  L           
Sbjct: 225 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMA------ 278

Query: 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
                                 S   TPN                 P   T+NIL+   C
Sbjct: 279 ----------------------SRGCTPNV--------------LVPDKVTFNILIAGAC 302

Query: 527 T--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              ++ +  AL  EM    L P+ +++  LID    +G VE A
Sbjct: 303 KAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAA 345



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 135/327 (41%), Gaps = 64/327 (19%)

Query: 254 PNMYICRTIIDVCGIC-GDYM-KSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           PN+     +++  G+C  D M ++ A+ E +  + VT ++  ++ L++    A  +   L
Sbjct: 214 PNVITYNALVN--GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEAL 271

Query: 310 EVYKNMQKLG-----VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           E+   M   G     ++ D  ++NIL+   C AGN   A  ++ E   + AK  L+ DV 
Sbjct: 272 ELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEE---MVAKN-LQPDVM 327

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           T+  ++     A   + A  + + M + GV PN +T+++L++    +G +E+A    EEM
Sbjct: 328 TFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEM 387

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           + +GC P+S     L+ A   A + D A +L                             
Sbjct: 388 VSSGCVPDSITYGSLVYALCRASRTDDALQLVSEL------------------------- 422

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTV 542
                                 K F + P T TYNIL+          +A+  + EM   
Sbjct: 423 ----------------------KSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGK 460

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
           G  P+  ++         SGN+ G ++
Sbjct: 461 GHQPDSFTFAACFSGLHRSGNLAGTME 487



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 124/276 (44%), Gaps = 34/276 (12%)

Query: 324 MASYNILLKACCLAGNTVLAQEIY-GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           +A YNI+L++ C AG+T  A EI+ GE+    A+  +   + TY+TI+     +      
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEM----ARDGVAPTIVTYNTIINGLCKSNDLGAG 56

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +++ E+++  G  P+ +T+++LI++   AG +E+A  L  +M   GC PN    ++L+  
Sbjct: 57  MELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLING 116

Query: 443 CVEACQFDRAFRLFRSWTLSKTQV-----ALGEDYDG------NTDRISNMEHKDKQSIT 491
             +  + D A  L +  T     V           DG        +    M      S+ 
Sbjct: 117 LCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR 176

Query: 492 NTPNFVPNSHY--------------SSFDKRFS--FKPTTTTYNILMKACCT--DYYRVK 533
            +P+ V  S                S FD   +  + P   TYN L+   C      R  
Sbjct: 177 VSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAH 236

Query: 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           A++  M   G++P+ I++++L+DA   +  V+ AL+
Sbjct: 237 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALE 272



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 108/219 (49%), Gaps = 11/219 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTI---IDVCGIC--GDYMKSR 276
           I +   V  F K   +  AL           +PN+ +   +   I + G C  G++ ++ 
Sbjct: 252 ITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQAS 311

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A++E++ ++N+  ++  F +L++    A  ++   ++   M  LGV  ++ +YN L+   
Sbjct: 312 ALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGL 371

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C +G     +E    ++ + + G +  D  TY ++V     A     AL++  ++ S G 
Sbjct: 372 CKSGRI---EEACQFLEEMVSSGCVP-DSITYGSLVYALCRASRTDDALQLVSELKSFGW 427

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
            P+T+T++ L++    +G  EQA+ + EEM+  G +P+S
Sbjct: 428 DPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDS 466


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 146/335 (43%), Gaps = 34/335 (10%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           KK  LVSAL   +        PN+ I  TI+ + G C  G   ++  I   + ++ ++LN
Sbjct: 389 KKGYLVSALELLNEMVAKRFEPNV-ITYTIL-INGFCKQGRLEEAAEIVNSMSAKGLSLN 446

Query: 291 IYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
              +N L+     D  ++  L+++  M   G   D+ ++N L+   C       A  +Y 
Sbjct: 447 TVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYH 506

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           +   +  +GV+  +  TY+T+V  F      Q A K+ ++ML  G   + IT++ LI A 
Sbjct: 507 D---MFLEGVIA-NTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKAL 562

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468
              G VE+ + LFEEML  G  P    CNIL+       + + A +  +          L
Sbjct: 563 CKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDM----IHRGL 618

Query: 469 GED---YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMK 523
             D   Y+   + +  M H  + S             + F+K  S   +P   TYN L+ 
Sbjct: 619 TPDIVTYNSLINGLCKMGHVQEAS-------------NLFNKLQSEGIRPDAITYNTLIS 665

Query: 524 ACCTDYYRVKALMNEMRTV--GLSPNHISWTILID 556
             C +     A +   + V  G  PN ++W+ILI+
Sbjct: 666 RHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILIN 700



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 138/346 (39%), Gaps = 49/346 (14%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM------NVNAHDLKFTLEVY 312
           C  +ID  G  GD+     + + ++ + +     +F  +M       +     +  L+++
Sbjct: 102 CYLLIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMW 161

Query: 313 KNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
                 GV +      SYN++L          +A  ++ +   + ++GV    V+T+  +
Sbjct: 162 ------GVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYD---MLSRGV-SPTVYTFGVV 211

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +K          A  +  DM   G  PN++ + +LI+A      V +A+ L E+M    C
Sbjct: 212 MKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCC 271

Query: 430 EPNSQCCNILLQACVEACQFDRAFRL--------FRSWTLSKTQVALGEDYDGNTDRISN 481
           EP+ Q  N ++     A +   A +L        F +  L+   +  G    G  D    
Sbjct: 272 EPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARA 331

Query: 482 MEHKDKQSITNTPNFVPNSHYSSF--DKRF--------------SFKPTTTTYNILMKAC 525
           + +K    I N    + N+  S +    RF               ++P   T+NI++   
Sbjct: 332 LLNK----IPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGL 387

Query: 526 CTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               Y V A  L+NEM      PN I++TILI+     G +E A +
Sbjct: 388 VKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAE 433



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 120/310 (38%), Gaps = 33/310 (10%)

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            +S NV L+I V      V  +       V+ +M   GV   + ++ +++KA C+     
Sbjct: 170 FKSYNVVLDILVDGDCPRVAPN-------VFYDMLSRGVSPTVYTFGVVMKALCMVSEVD 222

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  +   ++ +   G +   V  Y T++    +      AL++ EDM      P+  T+
Sbjct: 223 SACSL---LRDMAKHGCVPNSVI-YQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTF 278

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-- 459
           + +I+    AG + +A  L + ML  G   ++     L+       Q D A  L      
Sbjct: 279 NDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN 338

Query: 460 -------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN-----FVPNSHYSSFDK 507
                  TL    VA G   +      +NM     +    T N      V   +  S  +
Sbjct: 339 PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALE 398

Query: 508 RFS------FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACG 559
             +      F+P   TY IL+   C      +A  ++N M   GLS N + +  LI A  
Sbjct: 399 LLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALC 458

Query: 560 GSGNVEGALQ 569
             GN+E ALQ
Sbjct: 459 KDGNIEEALQ 468



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 143/393 (36%), Gaps = 89/393 (22%)

Query: 249 KHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHD 304
           KH   PN  I +T+I    +C +   S A+   ED+       ++  FN +++    A  
Sbjct: 233 KHGCVPNSVIYQTLIH--ALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGR 290

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG---------------NTVLAQE-IYG 348
           +    ++   M   G   D  +Y  L+   C  G               NTVL    I G
Sbjct: 291 IHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISG 350

Query: 349 EV---KHLEAKGVL---------KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            V   +  EAK +L         + D +T++ ++       +   AL++  +M++    P
Sbjct: 351 YVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEP 410

Query: 397 NTITWSSLINA---------------------------------CA--NAGLVEQAMHLF 421
           N IT++ LIN                                  CA    G +E+A+ LF
Sbjct: 411 NVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLF 470

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM   GC+P+    N L+    +  + + A  L+    L        E    NT   + 
Sbjct: 471 GEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFL--------EGVIANTVTYNT 522

Query: 482 MEHK--DKQSITNTPNFVPNSHYSSFDKRFSFKP-TTTTYNILMKACCTDYYRVK--ALM 536
           + H    + SI      V        +  F   P    TYN L+KA C      K   L 
Sbjct: 523 LVHAFLMRDSIQQAFKLVD-------EMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLF 575

Query: 537 NEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            EM   G+ P  IS  ILI     +G V  AL+
Sbjct: 576 EEMLGKGIFPTIISCNILISGLCRTGKVNDALK 608



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 51/259 (19%), Positives = 104/259 (40%), Gaps = 43/259 (16%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLN 290
           K  ++  AL+ +         P++Y   ++I+  G+C ++    A+  Y D+  + V  N
Sbjct: 459 KDGNIEEALQLFGEMSGKGCKPDIYTFNSLIN--GLCKNHKMEEALSLYHDMFLEGVIAN 516

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
              +N+L++  +    ++   ++   M   G   D  +YN L+KA C  G     ++  G
Sbjct: 517 TVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAV---EKGLG 573

Query: 349 EVKHLEAKGV----------------------------------LKLDVFTYSTIVKVFA 374
             + +  KG+                                  L  D+ TY++++    
Sbjct: 574 LFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLC 633

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                Q A  +   + S G+ P+ IT+++LI+   + G+   A  L  + + +G  PN  
Sbjct: 634 KMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEV 693

Query: 435 CCNILLQACVEACQFDRAF 453
             +IL+   V+   +   F
Sbjct: 694 TWSILINYIVKKIPWGARF 712


>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Cucumis sativus]
          Length = 460

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 134/305 (43%), Gaps = 36/305 (11%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            I   LR++N+  N  +F +L+     AH ++  +E++  M        + S+N+LL   
Sbjct: 102 TILGHLRNRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTL 161

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
                   A EI+ +   ++     + +  +Y+ ++K +     W+ A  + ++ML  GV
Sbjct: 162 VDCDQFSKASEIFQQAYEMD----FRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGV 217

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+ +T++S +      G ++ A+ LF+ M + G  PN+    +L++      ++  A +
Sbjct: 218 QPSVVTYNSFLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKK 277

Query: 455 L-----FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
           L     F    L      +   + G T  I  ME     S+ N              K+ 
Sbjct: 278 LMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEME-----SLLNEM------------KKR 320

Query: 510 SFKPTTTTYNILMKACCT-----DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
             KP   TYNIL+   C      D Y+V   + +M+  G  PN  ++ ++ID    +G+ 
Sbjct: 321 RLKPDVVTYNILVNYLCKEGKVGDAYKV---LVKMQVGGCDPNAATYRMMIDGYCNAGDF 377

Query: 565 EGALQ 569
           +GA++
Sbjct: 378 DGAMK 382



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/195 (19%), Positives = 87/195 (44%), Gaps = 6/195 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
           G + ++  +++++  + V  ++  +NS + V     ++   L ++KNM + G   +  +Y
Sbjct: 200 GGWEQACNLFDEMLEKGVQPSVVTYNSFLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTY 259

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            +L++  C  G    A+++  +   +E  G  KL    Y  ++              +  
Sbjct: 260 ALLMEGWCFIGKYKEAKKLMFD---MEFHGC-KLRPVNYGVLMTHLGKTGNIDEMESLLN 315

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M    + P+ +T++ L+N     G V  A  +  +M   GC+PN+    +++     A 
Sbjct: 316 EMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAG 375

Query: 448 QFDRAFRLFRSWTLS 462
            FD A ++  +  +S
Sbjct: 376 DFDGAMKILNAMLMS 390



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 25/226 (11%)

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +YS+++   A ++ ++    +   + +  +  N   + +LI     A LVE+ + LF +M
Sbjct: 83  SYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFVALIQHYGKAHLVEKGIELFHQM 142

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRL--------FRSWTLSKTQVALGEDYDGNT 476
               C    Q  N+LL   V+  QF +A  +        FR  ++S   +  G    G  
Sbjct: 143 PSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMDFRPNSVSYNIMIKGWIKKGGW 202

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS-------FK--------PTTTTYNIL 521
           ++  N+  +  +          NS      ++         FK        P   TY +L
Sbjct: 203 EQACNLFDEMLEKGVQPSVVTYNSFLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALL 262

Query: 522 MKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           M+  C    Y   K LM +M   G     +++ +L+   G +GN++
Sbjct: 263 MEGWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVLMTHLGKTGNID 308


>gi|384253709|gb|EIE27183.1| hypothetical protein COCSUDRAFT_38919 [Coccomyxa subellipsoidea
           C-169]
          Length = 675

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 121/312 (38%), Gaps = 73/312 (23%)

Query: 279 YEDLRSQNV--TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           ++++RS+ +    + +  N L+N  + DL     +Y  +   G+     ++N LLKAC  
Sbjct: 192 FQEMRSRCIWSPQDTHTVNILLNALSSDLPAAFAMYNELMAGGLEPTRVTFNTLLKACMR 251

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
             N   A E+   ++    +G    +  TY+T +K  + +   + ALKV   M + G  P
Sbjct: 252 GQNAARADEVLAWMRERGCQG----NEHTYNTYIKAASYSGDVERALKVLPQMAADGCAP 307

Query: 397 NTITWSSLINACAN-----------AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
               W SLI AC             A  VE A+ L+ +M  +G  P    CN LL AC++
Sbjct: 308 TPAVWGSLIVACGKSPKVAPQPFGMARQVESALGLWRQMAASGTTPTVDNCNALLTACID 367

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
             Q +RA  ++RS                                               
Sbjct: 368 CDQGERALDIYRSM---------------------------------------------- 381

Query: 506 DKRFSFKPTTTTYNILMKAC---------CTDYYRVKALMNEMRTVGLSPNHISWTILID 556
            K    +P   TYN+ ++AC              +   L+ +MR  G++P+  + T ++ 
Sbjct: 382 -KDLGVEPDLVTYNLAVRACGGQSGSKLRSAQLDQAFQLLADMRAAGVAPDQQTVTSMLA 440

Query: 557 ACGGSGNVEGAL 568
            C  +G    AL
Sbjct: 441 LCAQAGAGRRAL 452



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 15/234 (6%)

Query: 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288
           + FG  R + SAL  +       ++P +  C  ++  C  C    ++  IY  ++   V 
Sbjct: 328 QPFGMARQVESALGLWRQMAASGTTPTVDNCNALLTACIDCDQGERALDIYRSMKDLGVE 387

Query: 289 LNIYVFN---------SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
            ++  +N         S   + +  L    ++  +M+  GV  D  +   +L  C  AG 
Sbjct: 388 PDLVTYNLAVRACGGQSGSKLRSAQLDQAFQLLADMRAAGVAPDQQTVTSMLALCAQAGA 447

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG--VTPN 397
              A  +Y EVK       +++DV   S ++         + AL V   M+     + PN
Sbjct: 448 GRRALALYEEVK----DSGIRIDVALQSALIAALGSEGLAEDALAVFRKMVWGPRRMKPN 503

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
             T+  +   C  AGLV++A+H +  M + G  P++     ++ A VEA   ++
Sbjct: 504 EHTYRLVTRICREAGLVKEALHAYRGMRRMGFRPSNAEWREMISAAVEAAMAEK 557



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 107/250 (42%), Gaps = 24/250 (9%)

Query: 227 FVREFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285
            +R + + R    ALRA+   +   + SP       I+ +  +  D   + A+Y +L + 
Sbjct: 175 LLRNYSRMRAPAFALRAFQEMRSRCIWSPQDTHTVNIL-LNALSSDLPAAFAMYNELMAG 233

Query: 286 NVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            +      FN+L+   +   +     EV   M++ G   +  +YN  +KA   +G+   A
Sbjct: 234 GLEPTRVTFNTLLKACMRGQNAARADEVLAWMRERGCQGNEHTYNTYIKAASYSGDVERA 293

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIV----------KVFADAKWWQMALKVKEDMLSAG 393
            ++   +  + A G         S IV          + F  A+  + AL +   M ++G
Sbjct: 294 LKV---LPQMAADGCAPTPAVWGSLIVACGKSPKVAPQPFGMARQVESALGLWRQMAASG 350

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC-------VEA 446
            TP     ++L+ AC +    E+A+ ++  M   G EP+    N+ ++AC       + +
Sbjct: 351 TTPTVDNCNALLTACIDCDQGERALDIYRSMKDLGVEPDLVTYNLAVRACGGQSGSKLRS 410

Query: 447 CQFDRAFRLF 456
            Q D+AF+L 
Sbjct: 411 AQLDQAFQLL 420



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 104/264 (39%), Gaps = 50/264 (18%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            ++  + +   T  +   N+L+   ++    +  L++Y++M+ LGV  D+ +YN+ ++AC
Sbjct: 341 GLWRQMAASGTTPTVDNCNALLTACIDCDQGERALDIYRSMKDLGVEPDLVTYNLAVRAC 400

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
                + L                 +LD                   A ++  DM +AGV
Sbjct: 401 GGQSGSKLRSA--------------QLD------------------QAFQLLADMRAAGV 428

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+  T +S++  CA AG   +A+ L+EE+  +G   +    + L+ A       + A  
Sbjct: 429 APDQQTVTSMLALCAQAGAGRRALALYEEVKDSGIRIDVALQSALIAALGSEGLAEDALA 488

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           +FR       ++   E       RI       K+++          H     +R  F+P+
Sbjct: 489 VFRKMVWGPRRMKPNEHTYRLVTRICREAGLVKEAL----------HAYRGMRRMGFRPS 538

Query: 515 TTTYNILMKACCTDYYRVKALMNE 538
              +  ++ A       V+A M E
Sbjct: 539 NAEWREMISAA------VEAAMAE 556


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 141/314 (44%), Gaps = 36/314 (11%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMA 322
           G+C  GD  ++  ++ + +++ +  +I V+NSL+        +   L+V   M + G   
Sbjct: 334 GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHP 393

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+ +YNI++   C  GN   A  +  +      KG L  DVFT++T++  +        A
Sbjct: 394 DIQTYNIVINGLCKMGNISDATVVMNDAI---MKGYLP-DVFTFNTLIDGYCKRLKLDSA 449

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           L++ E M   G+ P+TIT++S++N    AG V +    F+EM+  GC PN    NIL++ 
Sbjct: 450 LQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIEN 509

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI-TNTPNFVPNSH 501
              + + + A ++     +  +Q  L               H D  S  T    F  N  
Sbjct: 510 FCRSNKMEEASKVI----VKMSQEGL---------------HPDAVSFNTLIYGFCRNGD 550

Query: 502 ----YSSFDK--RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTI 553
               Y  F K     +  T  T+N L+ A     + +  + + +EM + G   +  ++ +
Sbjct: 551 LEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRV 610

Query: 554 LIDACGGSGNVEGA 567
           LID    + NV+ A
Sbjct: 611 LIDGSCKTANVDRA 624



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 160/403 (39%), Gaps = 38/403 (9%)

Query: 195 FRIVQLCVN-KPDVNLAIRYACIVP-RADILFCNFVREFGKKRDLVSALRAYDASKKHLS 252
            R+   C+  +P  ++A+R    +P R  + +C  V           A + +D       
Sbjct: 125 IRLRSFCLTARP--HIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHV 182

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
            PN+     ++      GD +++  +   +  + +++N++ +N  +     A  L   + 
Sbjct: 183 FPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVR 242

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +   M+   V  D+ +YN L++  C      + QE    ++ +  +G L  D FTY+TI+
Sbjct: 243 LVDGMRAYAV-PDVVTYNTLIRGLC---KKSMPQEAMHYLRRMMNQGCLP-DDFTYNTII 297

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +      Q A ++ +D +  G  P+ +T+ SLIN     G VE+A+ LF E    G +
Sbjct: 298 DGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIK 357

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH-KDKQS 489
           P+    N L++          A ++            + + Y+   + +  M +  D   
Sbjct: 358 PDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDI-QTYNIVINGLCKMGNISDATV 416

Query: 490 ITNT-------PN-FVPNSHYSSFDKR---------------FSFKPTTTTYNILMKACC 526
           + N        P+ F  N+    + KR               +   P T TYN ++   C
Sbjct: 417 VMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLC 476

Query: 527 T--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                  V     EM   G  PN I++ ILI+    S  +E A
Sbjct: 477 KAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEA 519



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/347 (19%), Positives = 131/347 (37%), Gaps = 95/347 (27%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA--------------- 337
           + ++L++   HD     +VY  M   GV  D+ ++ I L++ CL                
Sbjct: 91  IMDALVDAAYHDQAH--KVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPH 148

Query: 338 ----------------GNTVLAQEIYGEVKH-----------------------LEAKGV 358
                           G+T  A++++ ++ H                       LEA  +
Sbjct: 149 RGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLL 208

Query: 359 L--------KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           L         +++FTY+  ++   +A     A+++ + M +  V P+ +T+++LI     
Sbjct: 209 LGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCK 267

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA------CVEACQF--DRAFRLFRSWTLS 462
             + ++AMH    M+  GC P+    N ++          EA +   D  F+ F    ++
Sbjct: 268 KSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVT 327

Query: 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
              +  G   +G+ +R   + ++ +                        KP    YN L+
Sbjct: 328 YCSLINGLCAEGDVERALELFNEAQAK--------------------GIKPDIVVYNSLV 367

Query: 523 KACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           K  C     + AL  MNEM   G  P+  ++ I+I+     GN+  A
Sbjct: 368 KGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDA 414



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/256 (20%), Positives = 104/256 (40%), Gaps = 45/256 (17%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVF 294
           ++ AL+  +   +    P++     +I+  G+C  G+   +  +  D   +    +++ F
Sbjct: 376 ILHALQVMNEMAEEGCHPDIQTYNIVIN--GLCKMGNISDATVVMNDAIMKGYLPDVFTF 433

Query: 295 NSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           N+L++     LK    L++ + M + G+  D  +YN +L   C AG      E + E   
Sbjct: 434 NTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQE--- 490

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +  KG    +  TY+ +++ F  +   + A KV   M   G+ P+ +++++LI      G
Sbjct: 491 MILKGC-HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNG 549

Query: 413 LVEQA-------------------------------MHL----FEEMLQAGCEPNSQCCN 437
            +E A                               MH+    F+EML  G   +S    
Sbjct: 550 DLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYR 609

Query: 438 ILLQACVEACQFDRAF 453
           +L+    +    DRA+
Sbjct: 610 VLIDGSCKTANVDRAY 625



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 101/214 (47%), Gaps = 12/214 (5%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           F   +  + K+  L SAL+  +   ++  +P+     ++++  G+C  G   +    +++
Sbjct: 433 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLN--GLCKAGKVNEVNETFQE 490

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +    N   +N L+     ++ ++   +V   M + G+  D  S+N L+   C  G+
Sbjct: 491 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGD 550

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  ++   + LE KG       T++T++  F+      MA K+ ++MLS G   ++ 
Sbjct: 551 LEGAYLLF---QKLEEKG-YSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSY 606

Query: 400 TWSSLIN-ACANAGLVEQAMHLFEEMLQAGCEPN 432
           T+  LI+ +C  A +    MHL  EM++ G  P+
Sbjct: 607 TYRVLIDGSCKTANVDRAYMHLV-EMIKKGFIPS 639


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 146/338 (43%), Gaps = 28/338 (8%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYV 293
           D  + L  ++ S K       Y C  +++  G+C D   S+A  + + L +  +     +
Sbjct: 308 DSQTMLSLFEESVKKGVKIGAYTCSILLN--GLCKDGKISKAEEVLQTLVNSGLLQTTVI 365

Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L+N      DL+    +++ M+   +  D  +YN L+      G      E +  V 
Sbjct: 366 YNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGL---GKVERITEAHDLVI 422

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            +E  GV    V T++T++  +  A   +    +  DM   G+ PN +++ S++NA    
Sbjct: 423 EMEKNGV-NPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKN 481

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
           G + +A+ + ++M      P +Q  N ++ A +E    D+AF L      S    ++   
Sbjct: 482 GKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSI--- 538

Query: 472 YDGNTDRISNMEHKD--KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--T 527
                    N+  K   KQS  +    + +S      + +   P   +YN L+ ACC  +
Sbjct: 539 ------VTYNLLIKGLCKQSQISEAEELLDSL-----RNYGLAPDVISYNTLISACCYRS 587

Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           +  R   L  EM   G+ P+  ++ +L  + GG+G V 
Sbjct: 588 NTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVH 625



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 133/334 (39%), Gaps = 32/334 (9%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +++   +  + +  DL  A   +   K  L  P+      +I+  G      ++  +  +
Sbjct: 364 VIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIE 423

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    V  ++  FN+L++    A  L+    +  +MQ+ G+  ++ SY  ++ A C  G 
Sbjct: 424 MEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGK 483

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            + A  I   +  +  K VL      Y+ I+  + +      A  + E M S+GV P+ +
Sbjct: 484 ILEAVAI---LDDMFIKDVLP-GAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIV 539

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS- 458
           T++ LI        + +A  L + +   G  P+    N L+ AC      DRA  L +  
Sbjct: 540 TYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEM 599

Query: 459 WTLS-----KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
           W        +T   L     G   R+  ME               N +    DK     P
Sbjct: 600 WKCGIKPSPRTYRMLFSSL-GGAGRVHEME---------------NLYQQMLDK--DVVP 641

Query: 514 TTTTYNILMKAC--CTDYYRVKALMNEMRTVGLS 545
            +  YNI++ A   C +  +V+AL  EM   G++
Sbjct: 642 CSGIYNIMVDAYAKCGEESKVEALRKEMSDKGIA 675



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 108/263 (41%), Gaps = 30/263 (11%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D  ++N  ++AC +AG+     E  G ++ +   G    + F+Y+ ++     A     A
Sbjct: 151 DTFTWNKAVQACVVAGDL---DEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDA 207

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +K+ ++M    V PN IT++++I+     G +E    L+ +ML+ G +PN    N+LL  
Sbjct: 208 VKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSG 267

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDY----DGNT------DRISNMEHKDKQSITN 492
              A +      +      S+  V  G  Y    DG++        +S  E   K+ +  
Sbjct: 268 LCRAGRMGETAAVLDEMA-SRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKI 326

Query: 493 TP--------NFVPNSHYSSFDKRF------SFKPTTTTYNILMKACCT--DYYRVKALM 536
                         +   S  ++            TT  YN L+   C   D     ++ 
Sbjct: 327 GAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIF 386

Query: 537 NEMRTVGLSPNHISWTILIDACG 559
            +M++  + P+HI++  LI+  G
Sbjct: 387 QQMKSRLIRPDHITYNALINGLG 409



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 115/266 (43%), Gaps = 30/266 (11%)

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE-VKHLEAKGVLKLDVFTY 366
            ++++  M +  V+ +  +YN ++      G+      ++ + ++H      LK +V TY
Sbjct: 207 AVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRH-----GLKPNVITY 261

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + ++     A        V ++M S  + P+  T+S L +  +  G  +  + LFEE ++
Sbjct: 262 NVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVK 321

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNME 483
            G +  +  C+ILL    +  +  +A  + ++     L +T V      +G   +I ++E
Sbjct: 322 KGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYC-QIGDLE 380

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCTDYYRVKA--LMNEM 539
                             +S F +  S   +P   TYN L+          +A  L+ EM
Sbjct: 381 ----------------GAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEM 424

Query: 540 RTVGLSPNHISWTILIDACGGSGNVE 565
              G++P+  ++  LIDA G +G +E
Sbjct: 425 EKNGVNPSVETFNTLIDAYGRAGQLE 450


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 141/314 (44%), Gaps = 36/314 (11%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMA 322
           G+C  GD  ++  ++ + +++ +  +I V+NSL+        +   L+V   M + G   
Sbjct: 337 GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHP 396

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+ +YNI++   C  GN   A  +  +      KG L  DVFT++T++  +        A
Sbjct: 397 DIQTYNIVINGLCKMGNISDATVVMNDAI---MKGYLP-DVFTFNTLIDGYCKRLKLDSA 452

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           L++ E M   G+ P+TIT++S++N    AG V +    F+EM+  GC PN    NIL++ 
Sbjct: 453 LQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIEN 512

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI-TNTPNFVPNSH 501
              + + + A         SK  V + ++            H D  S  T    F  N  
Sbjct: 513 FCRSNKMEEA---------SKVIVKMSQE----------GLHPDAVSFNTLIYGFCRNGD 553

Query: 502 ----YSSFDK--RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTI 553
               Y  F K     +  T  T+N L+ A     + +  + + +EM + G   +  ++ +
Sbjct: 554 LEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRV 613

Query: 554 LIDACGGSGNVEGA 567
           LID    + NV+ A
Sbjct: 614 LIDGSCKTANVDRA 627



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 154/389 (39%), Gaps = 35/389 (8%)

Query: 208 NLAIRYACIVP-RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266
           ++A+R    +P R  + +C  V           A + +D        PN+     ++   
Sbjct: 140 HIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHAL 199

Query: 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADM 324
              GD +++  +   +  + +++N++ +N  +     A  L   + +   M+   V  D+
Sbjct: 200 CKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDV 258

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            +YN L++  C      + QE    ++ +  +G L  D FTY+TI+  +      Q A +
Sbjct: 259 VTYNTLIRGLC---KKSMPQEAMHYLRRMMNQGCLP-DDFTYNTIIDGYCKISMVQEATE 314

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           + +D +  G  P+ +T+ SLIN     G VE+A+ LF E    G +P+    N L++   
Sbjct: 315 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLC 374

Query: 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH-KDKQSITNT-------PN- 495
                  A ++            + + Y+   + +  M +  D   + N        P+ 
Sbjct: 375 LQGLILHALQVMNEMAEEGCHPDI-QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDV 433

Query: 496 FVPNSHYSSFDKR---------------FSFKPTTTTYNILMKACCT--DYYRVKALMNE 538
           F  N+    + KR               +   P T TYN ++   C       V     E
Sbjct: 434 FTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQE 493

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGA 567
           M   G  PN I++ ILI+    S  +E A
Sbjct: 494 MILKGCHPNPITYNILIENFCRSNKMEEA 522



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/347 (19%), Positives = 131/347 (37%), Gaps = 95/347 (27%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA--------------- 337
           + ++L++   HD     +VY  M   GV  D+ ++ I L++ CL                
Sbjct: 94  IMDALVDAAYHDQAH--KVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPH 151

Query: 338 ----------------GNTVLAQEIYGEVKH-----------------------LEAKGV 358
                           G+T  A++++ ++ H                       LEA  +
Sbjct: 152 RGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLL 211

Query: 359 L--------KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           L         +++FTY+  ++   +A     A+++ + M +  V P+ +T+++LI     
Sbjct: 212 LGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCK 270

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA------CVEACQF--DRAFRLFRSWTLS 462
             + ++AMH    M+  GC P+    N ++          EA +   D  F+ F    ++
Sbjct: 271 KSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVT 330

Query: 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
              +  G   +G+ +R   + ++ +                        KP    YN L+
Sbjct: 331 YCSLINGLCAEGDVERALELFNEAQAK--------------------GIKPDIVVYNSLV 370

Query: 523 KACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           K  C     + AL  MNEM   G  P+  ++ I+I+     GN+  A
Sbjct: 371 KGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDA 417



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/256 (20%), Positives = 104/256 (40%), Gaps = 45/256 (17%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVF 294
           ++ AL+  +   +    P++     +I+  G+C  G+   +  +  D   +    +++ F
Sbjct: 379 ILHALQVMNEMAEEGCHPDIQTYNIVIN--GLCKMGNISDATVVMNDAIMKGYLPDVFTF 436

Query: 295 NSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           N+L++     LK    L++ + M + G+  D  +YN +L   C AG      E + E   
Sbjct: 437 NTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQE--- 493

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +  KG    +  TY+ +++ F  +   + A KV   M   G+ P+ +++++LI      G
Sbjct: 494 MILKGC-HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNG 552

Query: 413 LVEQA-------------------------------MHL----FEEMLQAGCEPNSQCCN 437
            +E A                               MH+    F+EML  G   +S    
Sbjct: 553 DLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYR 612

Query: 438 ILLQACVEACQFDRAF 453
           +L+    +    DRA+
Sbjct: 613 VLIDGSCKTANVDRAY 628



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 100/214 (46%), Gaps = 12/214 (5%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           F   +  + K+  L SAL+  +   ++  +P+     ++++  G+C  G   +    +++
Sbjct: 436 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLN--GLCKAGKVNEVNETFQE 493

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +    N   +N L+     ++ ++   +V   M + G+  D  S+N L+   C  G+
Sbjct: 494 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGD 553

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
               +  Y   + LE KG       T++T++  F+      MA K+ ++MLS G   ++ 
Sbjct: 554 L---EGAYLLFQKLEEKG-YSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSY 609

Query: 400 TWSSLIN-ACANAGLVEQAMHLFEEMLQAGCEPN 432
           T+  LI+ +C  A +    MHL  EM++ G  P+
Sbjct: 610 TYRVLIDGSCKTANVDRAYMHLV-EMIKKGFIPS 642


>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
          Length = 905

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 152/372 (40%), Gaps = 71/372 (19%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDL 305
           KK L  P+      +I      GD   +RA +E++R++ +  N +VF SL++  A   D+
Sbjct: 289 KKLLHEPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 348

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACC------LAGNTVLAQEIYGEVKHLEAKGV- 358
           +  L   + M+  G+   + +Y+IL+           +GN   A+E+   V+ +E  G+ 
Sbjct: 349 RGALSCVEEMKSEGLELTIVTYSILISGFAKINDSHQSGNMERAEEL---VREMEEDGID 405

Query: 359 ---------------------------------LKLDVFTYSTIVKVFADAKWWQMALKV 385
                                             K  + +Y  ++ ++        AL +
Sbjct: 406 APIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSI 465

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            ++M S G+  N  T+S LIN   +      A  +FEEML++G +P+    N+L++A  +
Sbjct: 466 SKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCK 525

Query: 446 ACQFDRAFRLFRSWTLSKTQVA------LGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
               DRA  +       + Q +      + E Y    D  S ++  D             
Sbjct: 526 MGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLD------------- 572

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTDY--YRVKALMNEMRTVGLSPNHISWTILIDA 557
                  +R    PT  TYN L+      +   R  +++++M   G++PN  ++TI++  
Sbjct: 573 -----LMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRG 627

Query: 558 CGGSGNVEGALQ 569
              SG++  A +
Sbjct: 628 YAASGDIGKAFE 639



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 137/339 (40%), Gaps = 53/339 (15%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   K+ +I +++ S  +  N   ++ L+N  ++ HD      +++ M + G+  D A Y
Sbjct: 457 GKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIY 516

Query: 328 NILLKACCLAGN-------------------------TVLAQEIYGEVKH-LEAKGVLKL 361
           N+L++A C  GN                          +    + G++K  L+   +++ 
Sbjct: 517 NLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRR 576

Query: 362 D-----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
                 V TY+ ++         Q A+ V + M  AG+TPN  T++ ++   A +G + +
Sbjct: 577 SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGK 636

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK---TQVALGEDYD 473
           A   F ++ ++G + +      LL+AC ++ +   A  + R  +  K            D
Sbjct: 637 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILID 696

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYR 531
           G   R    E +D           PN H               TY   + ACC   D  R
Sbjct: 697 GWARRGDVWEAEDLMKQMKEDGVPPNIH---------------TYTSYINACCKAGDMQR 741

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
            + ++ EM  VGL PN  ++T LI         + AL+C
Sbjct: 742 AEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKC 780



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 114/273 (41%), Gaps = 41/273 (15%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  F K  ++  A+   +  +K    P+    R II+   + GD   +    + +R   
Sbjct: 519 LIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSG 578

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
               +  +N+L++  V  H ++  + V   M   G+  +  +Y I+++    +G+   A 
Sbjct: 579 CVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAF 638

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK------------------ 386
           E + ++K    +  LKLDV+ Y T+++    +   Q AL V                   
Sbjct: 639 EYFTKIK----ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 694

Query: 387 -------------EDMLSA----GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
                        ED++      GV PN  T++S INAC  AG +++A  + EEM+  G 
Sbjct: 695 IDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGL 754

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           +PN +    L++        DRA + F    L+
Sbjct: 755 KPNVKTYTTLIKGWARVSLPDRALKCFEEMKLA 787



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 94/192 (48%), Gaps = 6/192 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +PN +    I+      GD  K+   +  ++   + L++Y++ +L+     +  ++  L 
Sbjct: 615 TPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALA 674

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M    +  +   YNIL+      G+   A+++   +K ++  GV   ++ TY++ +
Sbjct: 675 VTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDL---MKQMKEDGVPP-NIHTYTSYI 730

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A   Q A KV E+M+  G+ PN  T+++LI   A   L ++A+  FEEM  AG +
Sbjct: 731 NACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLK 790

Query: 431 PNSQCCNILLQA 442
           P+    + L+ +
Sbjct: 791 PDEASYHCLVTS 802



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 91/182 (50%), Gaps = 6/182 (3%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           +R +    D+  A   +   K+     ++YI  T++  C   G    + A+  ++  Q +
Sbjct: 625 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKI 684

Query: 288 TLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             N +++N L++  A   D+    ++ K M++ GV  ++ +Y   + ACC AG+   A++
Sbjct: 685 PRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEK 744

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +  E+  +     LK +V TY+T++K +A       ALK  E+M  AG+ P+  ++  L+
Sbjct: 745 VIEEMVDVG----LKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV 800

Query: 406 NA 407
            +
Sbjct: 801 TS 802


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 149/338 (44%), Gaps = 24/338 (7%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           AL  +    K   +P+     T++D+    G++ ++ A++ D+ ++    + Y FN+++N
Sbjct: 448 ALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMIN 507

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                  +    E +  M++LG   D  +Y  L+   C  GN    +E +   + +E + 
Sbjct: 508 GFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNV---EEAFKVKEKMEKEA 564

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
           +L   +  Y++++     +K  +  + +  +M   G++PN +T+ +LI    + G +++A
Sbjct: 565 ILP-SIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKA 623

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
              + +M++ G  PN   C+ ++ +     + D A  L +   +    V L   Y    D
Sbjct: 624 FTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQK--MVNLDVFLDHGY---FD 678

Query: 478 RISNME--HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVK 533
           R+   +  + D Q I +T +           K FS  P +  YNI +   C        K
Sbjct: 679 RLHKADDGNLDSQKIADTLD--------ESSKSFSL-PNSVVYNIAIAGLCKSGKVDDAK 729

Query: 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            + + +   G SP++ ++  LI     +GNV  A   R
Sbjct: 730 KIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLR 767



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 95/195 (48%), Gaps = 12/195 (6%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-----NVNAHDLKF 307
           +PN+ IC  I+      G   ++  + + + + +V L+   F+ L      N+++  +  
Sbjct: 636 APNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIAD 695

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
           TL+      K   + +   YNI +   C +G    A++I+     L  +G    D FTY 
Sbjct: 696 TLD---ESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSS---LLLRG-FSPDNFTYC 748

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           T++  ++ A     A  ++++ML  G+ PN IT+++LIN    +G +++A  LF+++   
Sbjct: 749 TLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLK 808

Query: 428 GCEPNSQCCNILLQA 442
           G  PN    NIL+  
Sbjct: 809 GLAPNVISYNILIDG 823



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/382 (19%), Positives = 158/382 (41%), Gaps = 62/382 (16%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLN 290
           +K +  +A+  YD   +    P+++ C  +++    C D   + A+   +++      LN
Sbjct: 195 RKGESSNAILVYDHINRLGIVPDVFTCSIMVN--AYCKDGWVNVAVDFVKEMDYLGFELN 252

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           +  +NSL++  V+  D++    V K M + G++ +  +  +L+K  C       A+++  
Sbjct: 253 VVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLR 312

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG--------------- 393
           E++  E    + LD + Y  ++  +        A++++++ML+ G               
Sbjct: 313 EMERSEG---MVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGY 369

Query: 394 --------------------VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
                               + P + ++S+L++     GLV +A+ ++ EML+ G + N 
Sbjct: 370 CKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNV 429

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLS-KTQVALGE-DYDGNTDRISNMEHKDKQSIT 491
              N LL+       F+ A  +   W L  K  V   E  Y    D +  M         
Sbjct: 430 VTHNSLLKGLCRVGAFEDALHV---WHLMLKRGVTPDEVSYCTLLDLLFKM--------- 477

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHI 549
               F   + ++    R  +  +T  +N ++   C     ++A    N M+ +G  P+ +
Sbjct: 478 -GEFFRALALWNDILAR-GYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGV 535

Query: 550 SWTILIDACGGSGNVEGALQCR 571
           ++  LID     GNVE A + +
Sbjct: 536 TYRTLIDGYCKLGNVEEAFKVK 557



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 96/192 (50%), Gaps = 10/192 (5%)

Query: 245 DASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--V 300
           D S K  S PN  +    I + G+C  G    ++ I+  L  +  + + + + +L++   
Sbjct: 698 DESSKSFSLPNSVVYN--IAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYS 755

Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
            A ++     +   M K G+  ++ +YN L+   C +GN   AQ+++ ++ HL+    L 
Sbjct: 756 AAGNVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKL-HLKG---LA 811

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            +V +Y+ ++  +      + AL ++  ML  G++P+ IT+S+LI      G + +A +L
Sbjct: 812 PNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNL 871

Query: 421 FEEMLQAGCEPN 432
            +EM +   + N
Sbjct: 872 LDEMRELFADQN 883



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 145/402 (36%), Gaps = 110/402 (27%)

Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSR 276
           R+   F   +  F K   ++ A   ++  K+    P+    RT+ID  G C  G+  ++ 
Sbjct: 497 RSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLID--GYCKLGNVEEAF 554

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
            + E +  + +  +I ++NSL+            ++K+ +   VM        LL   CL
Sbjct: 555 KVKEKMEKEAILPSIELYNSLIG----------GLFKSKKTREVMD-------LLSEMCL 597

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G                    L  +V TY T++  + D      A     DM+  G  P
Sbjct: 598 KG--------------------LSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAP 637

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEML------------------------------- 425
           N I  S ++++    G +++A  L ++M+                               
Sbjct: 638 NVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTL 697

Query: 426 ----QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK------TQVALGEDYD-- 473
               ++   PNS   NI +    ++ + D A ++F S  L        T   L   Y   
Sbjct: 698 DESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAA 757

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCT--DY 529
           GN                       N  +S  D+  +    P   TYN L+   C   + 
Sbjct: 758 GNV----------------------NDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNL 795

Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            R + L +++   GL+PN IS+ ILID    +GN   AL  R
Sbjct: 796 DRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLR 837



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 129/334 (38%), Gaps = 31/334 (9%)

Query: 266 CGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMAD 323
           C  C      + + E  RS+ + L+ Y +  L++      K    + +   M  +G+  +
Sbjct: 299 CRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMN 358

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           +   N L+   C  G    A+ +   +   +    L+ + ++YST++  F        A+
Sbjct: 359 LFICNALINGYCKNGQVSEAERLLMRMVDWD----LEPESYSYSTLMDGFCREGLVTKAI 414

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
            V  +ML  G+  N +T +SL+      G  E A+H++  ML+ G  P+      LL   
Sbjct: 415 SVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLL 474

Query: 444 VEACQFDRAFRLFR---SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
            +  +F RA  L+    +    ++  A     +G       +E ++  +      F P+ 
Sbjct: 475 FKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDG 534

Query: 501 -----------HYSSFDKRFSFK---------PTTTTYNILMKAC--CTDYYRVKALMNE 538
                         + ++ F  K         P+   YN L+           V  L++E
Sbjct: 535 VTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSE 594

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
           M   GLSPN +++  LI      G ++ A    F
Sbjct: 595 MCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYF 628



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 49/176 (27%)

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A K+   +L  G +P+  T+ +LI+  + AG V  A  L +EML+ G  PN    N L+ 
Sbjct: 728 AKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITYNALIN 787

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              ++   DRA +LF    L                                        
Sbjct: 788 GLCKSGNLDRAQKLFDKLHLK--------------------------------------- 808

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILI 555
                      P   +YNIL+   C +    +A  L N+M   G+SP+ I+++ LI
Sbjct: 809 --------GLAPNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSALI 856



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 19/179 (10%)

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           W   ++V ED      +P    +  ++      G+++ A+H+F+ M + GC P+ + CN 
Sbjct: 134 WNELVRVFEDF---KFSPTV--FDMILKIYCEKGMIKNALHVFDNMGKLGCVPSLRSCNR 188

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           LL + V   +   A  ++           LG   D  T  I    +     +    +FV 
Sbjct: 189 LLSSLVRKGESSNAILVYDHIN------RLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVK 242

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILI 555
              Y        F+    TYN L+  C +  D  R + ++  M   G+  N ++ T+LI
Sbjct: 243 EMDY------LGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLI 295



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 52/148 (35%), Gaps = 39/148 (26%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           +K  L V+ NM KLG +  + S N LL +    G +  A  +Y  +  L           
Sbjct: 164 IKNALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRL----------- 212

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
                                       G+ P+  T S ++NA    G V  A+   +EM
Sbjct: 213 ----------------------------GIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEM 244

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRA 452
              G E N    N L+  CV     +RA
Sbjct: 245 DYLGFELNVVTYNSLIDGCVSIGDMERA 272


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 169/382 (44%), Gaps = 49/382 (12%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           F    +EF ++ D   +LR +   ++ +   PN +I   II + G  G   KS  I+E++
Sbjct: 109 FALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEM 168

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAG-N 339
            +  V  +++ + +L+N      ++  +LE+ + M+K  V   + +YN ++ +C   G N
Sbjct: 169 PTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLN 228

Query: 340 TVLAQEIYGEVKHL-----------------------EAKGVLKL--------DVFTYST 368
                 ++ E++H                        EA+ V +         D+ TY  
Sbjct: 229 WEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRN 288

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +V+ F      +   ++ ++M S+G  P+  +++ L+ A A+ G +  AM +F +M +A 
Sbjct: 289 LVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEAR 348

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           C PN+   ++LL       ++D    LF    +S T+  +G  Y+   +      +  K+
Sbjct: 349 CVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVG-TYNVLIEVFGEGGYF-KE 406

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSP 546
            +T   + V            + +P   TY  L+ AC     +   K ++  M   G+ P
Sbjct: 407 VVTLFHDMVEE----------NVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVP 456

Query: 547 NHISWTILIDACGGSGNVEGAL 568
           +  ++T +I+A G + + E AL
Sbjct: 457 STKAYTGVIEAYGQAASYEEAL 478



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 166/382 (43%), Gaps = 34/382 (8%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKS 275
           VPR+   +   +  +G+      +L   +  KK   +P++    T+I+ C   G ++   
Sbjct: 173 VPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGL 232

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAH-DLKFTLE-VYKNMQKLGVMADMASYNILLKA 333
            +++ ++R + +  +I  +N+L+N  A+  L    E V++ M + G++ D+ +Y  L++ 
Sbjct: 233 LSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVET 292

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
               G     +++   +K +E+ G L  D+ +Y+ +++ +A     + A+ V   M  A 
Sbjct: 293 F---GKLNKLEKVSELLKEMESSGNLP-DISSYNVLLEAYASKGDIRHAMGVFRQMQEAR 348

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             PN +T+S L+N     G  +    LF EM  +  EP+    N+L++   E   F    
Sbjct: 349 CVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVV 408

Query: 454 RLFRSWTLSKTQVALGEDYDG----------NTDRISNMEHKDKQSITNTPNFVPN---- 499
            LF        +  +G  Y+G          + D    + H D++ I  +          
Sbjct: 409 TLFHDMVEENVEPNMG-TYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEA 467

Query: 500 -SHYSSFDK---------RFSFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPN 547
               +S+++             KPT  TYN L  M A    Y   +A+M +M   G++ +
Sbjct: 468 YGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARD 527

Query: 548 HISWTILIDACGGSGNVEGALQ 569
             S+  +I+     G  E A++
Sbjct: 528 RDSFNGVIEGYRQGGQFEEAIK 549



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 107/247 (43%), Gaps = 14/247 (5%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           IVP     +   +  +G+      AL  ++   +  S P +    ++I++    G Y +S
Sbjct: 454 IVPSTKA-YTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKES 512

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKA 333
            AI   +    V  +   FN ++       +F   ++ Y  ++K     D  ++  +L  
Sbjct: 513 EAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSV 572

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C AG    ++E + E++   A G+L   V  Y  ++ V+A +  W  A +V ++M++  
Sbjct: 573 YCTAGLVDESEEQFREIR---ASGILP-SVMCYCMMIAVYARSNRWDDAYEVLDEMVTNK 628

Query: 394 VTPNTITWSSLINA----CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
           V+        ++       +N  +VE   ++F+++   GC    +  N LL+A     Q 
Sbjct: 629 VSNIHQVVGKMMKGDYDDYSNWQMVE---YVFDKLNSEGCGLGMRFYNTLLEALWWLGQK 685

Query: 450 DRAFRLF 456
           +RA R+ 
Sbjct: 686 ERAARVL 692



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/235 (17%), Positives = 102/235 (43%), Gaps = 9/235 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           PNM     +I  CG  G +  ++ I   +  + +  +   +  ++        +   L +
Sbjct: 421 PNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVM 480

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M ++G    + +YN L+      G   L +E    +  +   GV + D  +++ +++
Sbjct: 481 FNTMNEMGSKPTVETYNSLINMFARGG---LYKESEAIMWKMGESGVAR-DRDSFNGVIE 536

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +     ++ A+K   ++  A   P+  T+ ++++    AGLV+++   F E+  +G  P
Sbjct: 537 GYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESEEQFREIRASGILP 596

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKT---QVALGEDYDGNTDRISNME 483
           +  C  +++     + ++D A+ +      +K       +G+   G+ D  SN +
Sbjct: 597 SVMCYCMMIAVYARSNRWDDAYEVLDEMVTNKVSNIHQVVGKMMKGDYDDYSNWQ 651


>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
 gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
          Length = 669

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 14/226 (6%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--- 287
           + +  D  S ++     +   SSPN  I  T++      G   +++ ++ ++R+  V   
Sbjct: 258 YARAGDYQSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPT 317

Query: 288 --TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             TL+I V      V A+D  F  EVY+ ++  G   D+A YN L+KAC   G    A++
Sbjct: 318 PVTLSILV-EMYTRVGAYDQAF--EVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAED 374

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           I  E+K    +     D  TY T +  +A       A ++ + +++    P+T  ++ +I
Sbjct: 375 ILKEMK----RAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMI 430

Query: 406 NACANAGLVEQAMHLFEEMLQAG-CEPNSQCCNILLQACVEACQFD 450
            AC  AG +EQA  +F+EM+++G C P+ +   +LL +C+   + D
Sbjct: 431 RACKLAGEIEQASKIFDEMMESGCCSPDERVSGMLL-SCMAMAKSD 475



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 125/297 (42%), Gaps = 55/297 (18%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           S  + E++  + +  + Y F++L+N        +  L+ ++ M+  G++ D  +YN ++ 
Sbjct: 162 SEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVID 221

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
                G    A E+Y ++K +      KLD  TY  I  V+A A  +Q  +++ ++M  +
Sbjct: 222 MYGRVGRVNEAVELYEKLKSVN----WKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDS 277

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G +PN +  ++L+   + AG V QA  +F EM  +G  P     +IL++       +D+A
Sbjct: 278 GSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQA 337

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
           F ++ +                                                K   +K
Sbjct: 338 FEVYETL-----------------------------------------------KTEGWK 350

Query: 513 PTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                YN LMKAC       + + ++ EM+  G +P+H+++   ++     G V+ A
Sbjct: 351 CDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPA 407



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 6/224 (2%)

Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
           R    AL+ ++  K     P+     ++ID+ G  G   ++  +YE L+S N  L+   +
Sbjct: 192 RQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTY 251

Query: 295 NSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
            ++ NV   A D +  +++ + M+  G   +    N L+     AG    A++++ E++ 
Sbjct: 252 GAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMR- 310

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
               GV    V T S +V+++     +  A +V E + + G   +   ++SL+ AC   G
Sbjct: 311 --TSGVSPTPV-TLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGG 367

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            VEQA  + +EM +AGC P+       +         D A R+F
Sbjct: 368 RVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMF 411



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 117/243 (48%), Gaps = 7/243 (2%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           IVP  ++ + + +  +G+   +  A+  Y+  K      +      I +V    GDY   
Sbjct: 209 IVPD-EVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSI 267

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
             + +++R    + N  + N+LM     A  +    +V+  M+  GV     + +IL++ 
Sbjct: 268 MQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEM 327

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
               G    A E+Y   + L+ +G  K DV  Y++++K   +    + A  + ++M  AG
Sbjct: 328 YTRVGAYDQAFEVY---ETLKTEG-WKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAG 383

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             P+ +T+ + +N  A  G+V+ A  +F++++    +P++    ++++AC  A + ++A 
Sbjct: 384 CNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQAS 443

Query: 454 RLF 456
           ++F
Sbjct: 444 KIF 446



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 116/261 (44%), Gaps = 33/261 (12%)

Query: 310 EVYKNMQKLG-VMADMASYNILLKA---CCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVF 364
           EV K +QK G V A + S++  L A     +  N    ++     + L+A+  L +++ +
Sbjct: 85  EVLKIVQKTGNVEAALESWDKSLSAKNIVTVLNNINRWEKALAFFEWLKARPELYEINRY 144

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY+ ++K+  + +  +++ K+ E+M   G+ P+  T+S+LIN        E+A+  FE M
Sbjct: 145 TYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERM 204

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFR-----SWTLSKTQVALGEDYDGNTDRI 479
              G  P+    N ++       + + A  L+      +W L    V  G         I
Sbjct: 205 KSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLD--TVTYGA--------I 254

Query: 480 SNMEHK--DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKAL 535
           +N+  +  D QSI      + +S  S         P     N LM          + K +
Sbjct: 255 ANVYARAGDYQSIMQLVQEMRDSGSS---------PNAVIMNTLMGTLSKAGKVNQAKKV 305

Query: 536 MNEMRTVGLSPNHISWTILID 556
            NEMRT G+SP  ++ +IL++
Sbjct: 306 FNEMRTSGVSPTPVTLSILVE 326


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 118/250 (47%), Gaps = 10/250 (4%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           +IL C     + K+  +  A+  +   ++H  +PN+    T+IDV    G    +   +E
Sbjct: 380 NILIC----AYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFE 435

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +  + +T NI V+ SL++            E+   M   G+  +   +N ++ + C  G
Sbjct: 436 QMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEG 495

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
             + +++++     L  +  +K D+ TY+T++     A     A K+   M+S GV P+ 
Sbjct: 496 RVIESEKLF----DLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDI 551

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +T+ +LIN       ++ A+ LF+EM+ +G  PN    NI+LQ      +   A  L+ S
Sbjct: 552 VTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVS 611

Query: 459 WTLSKTQVAL 468
            T S TQ+ L
Sbjct: 612 ITKSGTQLEL 621



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 111/216 (51%), Gaps = 6/216 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           +PN+ +  ++I     C  + K+  +  ++  + + LN   FNS+++ +  + +   + +
Sbjct: 443 TPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 502

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M ++GV  D+ +YN L+  CCLAG    A ++   +  + + GV K D+ TY T++
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL---LASMVSVGV-KPDIVTYGTLI 558

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +        AL + ++M+S+GV+PN IT++ ++    +      A  L+  + ++G +
Sbjct: 559 NGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQ 618

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
                 NI+L    +    D A R+F++  L+  Q+
Sbjct: 619 LELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 654



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 130/310 (41%), Gaps = 48/310 (15%)

Query: 267 GICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMA 322
           G C       AI   + +RS  V  N+  ++SLMN    + + T   +++ +M K G+  
Sbjct: 280 GYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 339

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+A+Y  LL+     G  V   E++  +  +   G+ + D   ++ ++  +A  +    A
Sbjct: 340 DIATYRTLLQGYATKGALV---EMHALLDLMVRNGI-QPDHHVFNILICAYAKQEKVDQA 395

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           + V   M   G+ PN + + ++I+    +G V+ AM  FE+M+  G  PN      L+  
Sbjct: 396 MLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHG 455

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP--NFVPNS 500
                ++D+A  L                          +E  D+    NT   N + +S
Sbjct: 456 LCTCDKWDKAEELI-------------------------LEMLDRGICLNTIFFNSIIDS 490

Query: 501 HYSS---------FD--KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
           H            FD   R   KP   TYN L+  CC      +A  L+  M +VG+ P+
Sbjct: 491 HCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 550

Query: 548 HISWTILIDA 557
            +++  LI+ 
Sbjct: 551 IVTYGTLING 560



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 155/352 (44%), Gaps = 45/352 (12%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           S P++    T+++     GD  K+ + Y ++  + +  ++  ++S++     A  +   +
Sbjct: 197 SPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAM 256

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           EV   M K GVM D  +YN +L   C +G     +E  G +K + + GV + +V TYS++
Sbjct: 257 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQ---PKEAIGTLKKMRSDGV-EPNVVTYSSL 312

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+ + M   G+ P+  T+ +L+   A  G + +   L + M++ G 
Sbjct: 313 MNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYD-----GNT-DRIS 480
           +P+    NIL+ A  +  + D+A  +F   R   L+   V  G   D     G+  D + 
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 432

Query: 481 NMEHKDKQSITNTPNFVPNSHYSS---------------------FDKRFSFKPTTTTYN 519
             E    + +  TPN +    Y+S                      D+       T  +N
Sbjct: 433 YFEQMIDEGL--TPNIIV---YTSLIHGLCTCDKWDKAEELILEMLDRGICL--NTIFFN 485

Query: 520 ILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            ++ + C +   +++  L + M  +G+ P+ I++  LID C  +G ++ A +
Sbjct: 486 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATK 537



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 127/295 (43%), Gaps = 50/295 (16%)

Query: 311 VYKNMQKLGVMADMASYNILLKACC---------------------------LAGNTVL- 342
           V + M +LG + D+ SYN LLK  C                           ++ NTVL 
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209

Query: 343 -------AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
                  + + Y     +  +G+L  DV TYS+I+     A+    A++V   M+  GV 
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILP-DVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVM 268

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +T++S+++   ++G  ++A+   ++M   G EPN    + L+    +  +   A ++
Sbjct: 269 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKI 328

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           F S T        G + D  T R     +  K ++      +          R   +P  
Sbjct: 329 FDSMT------KRGLEPDIATYRTLLQGYATKGALVEMHALL------DLMVRNGIQPDH 376

Query: 516 TTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             +NIL+ A        +A++  ++MR  GL+PN + +  +ID    SG+V+ A+
Sbjct: 377 HVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM 431



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 6/164 (3%)

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           D R      ++  +N+++N      D       Y  M   G++ D+ +Y+ ++ A C A 
Sbjct: 191 DDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQ 250

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A E+   +  +   GV+  D  TY++I+  +  +   + A+   + M S GV PN 
Sbjct: 251 AMDKAMEV---LNTMVKNGVMP-DCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNV 306

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +T+SSL+N     G   +A  +F+ M + G EP+      LLQ 
Sbjct: 307 VTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG 350



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 126/315 (40%), Gaps = 39/315 (12%)

Query: 287 VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           VT  ++ +  L+     A  L        N+ K G   D  ++  LLK  C    T  A 
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE---DMLSAGVTPNTITW 401
           +I   ++ +   G +  DVF+Y+ ++K   D    Q AL++     D    G  P+ +++
Sbjct: 148 DIV--LRRMTELGCIP-DVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 204

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT- 460
           ++++N     G  ++A   + EML  G  P+    + ++ A  +A   D+A  +  +   
Sbjct: 205 NTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK 264

Query: 461 -------LSKTQVALGEDYDGNT-DRISNMEHKDKQSITNTPNFVPNSH----------- 501
                  ++   +  G    G   + I  +  K  +S    PN V  S            
Sbjct: 265 NGVMPDCMTYNSILHGYCSSGQPKEAIGTL--KKMRSDGVEPNVVTYSSLMNYLCKNGRS 322

Query: 502 ------YSSFDKRFSFKPTTTTYNILMKACCTDYYRVK--ALMNEMRTVGLSPNHISWTI 553
                 + S  KR   +P   TY  L++   T    V+  AL++ M   G+ P+H  + I
Sbjct: 323 TEARKIFDSMTKR-GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNI 381

Query: 554 LIDACGGSGNVEGAL 568
           LI A      V+ A+
Sbjct: 382 LICAYAKQEKVDQAM 396



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/268 (19%), Positives = 112/268 (41%), Gaps = 41/268 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I F + +    K+  ++ + + +D   +    P++    T+ID C + G   ++  +   
Sbjct: 482 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLAS 541

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S  V  +I  + +L+N       +   L ++K M   GV  ++ +YNI+L+       
Sbjct: 542 MVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRR 601

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV-------------KVFADAKWWQMALKVK 386
           T  A+E+Y  +     K   +L++ TY+ I+             ++F +     + L+ +
Sbjct: 602 TAAAKELYVSI----TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR 657

Query: 387 ------------------EDMLSA----GVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
                             +D+ +A    G+ P+  T+S +       G +E+   LF  M
Sbjct: 658 TFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSM 717

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRA 452
            + GC  +S+  N +++  ++     RA
Sbjct: 718 EENGCSADSRMLNSIVRKLLQRGDITRA 745


>gi|307106834|gb|EFN55079.1| hypothetical protein CHLNCDRAFT_134967 [Chlorella variabilis]
          Length = 668

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 121/289 (41%), Gaps = 64/289 (22%)

Query: 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           N L+N  A D+K        ++K GV+ D +++N LLKAC + G  V   E+   +  + 
Sbjct: 148 NLLLNSLAWDIKLQFVRCNQLRKEGVVPDASTFNTLLKAC-MRGRDVRRAEL--ALSWMR 204

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
             GV   D  TY+T++KVF+ AK ++  L V + M +AG  P    W SL+ AC+ AG +
Sbjct: 205 EDGVPP-DSVTYNTLIKVFSYAKDFERVLAVWKQMQAAGFAPTARLWGSLLMACSAAGQM 263

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNI-----LLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
           EQA   + EM Q   + N           ++ AC +A Q++RA   F      +   ALG
Sbjct: 264 EQAAIFWWEMKQLHSQGNGGVLTTDNVCAMMTACNDAGQYERALTAF------EEAKALG 317

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
              D                                         T  YNI ++AC T  
Sbjct: 318 VPMD-----------------------------------------TRAYNIALRACHTPG 336

Query: 530 YRVK--------ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
             ++        AL +E++  GL P+  ++  L   C  +     A+Q 
Sbjct: 337 KTMRQEQLLQAFALYDELKQRGLPPDTFTFGTLFALCAAARQGHCAMQA 385


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 147/336 (43%), Gaps = 59/336 (17%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           AL  +   K    SP+++   ++I   G+C    + ++ A+  ++ S N+  NI+ FN L
Sbjct: 254 ALDIFSYMKAKRISPDIFTYNSLIQ--GLCNFRRWKEASALLNEMTSLNIMPNIFTFNVL 311

Query: 298 MNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++    + K +    V+K M ++GV  D+ +Y+ L+    L    V A++++     +  
Sbjct: 312 VDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLF---DAMIT 368

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           KG  K D F+Y+ ++K +  AK    A ++  +M+  G+TP+ + +++LI+     G + 
Sbjct: 369 KGC-KPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLR 427

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
           +A  LF+ M   G  P+    ++LL    +     +AFRLFR                  
Sbjct: 428 EAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFR------------------ 469

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVK 533
                                V  S Y         KP    YNIL+ A C   +    +
Sbjct: 470 ---------------------VMQSTY--------LKPDIAMYNILIDAMCKFGNLKDAR 500

Query: 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            L +E+   GL PN   +T +I+     G ++ AL+
Sbjct: 501 KLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALE 536



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 121/298 (40%), Gaps = 41/298 (13%)

Query: 290 NIYVFNSLMNVNAH----DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
           +IY  + L++  +H    DL F+  V+  M KLG+  D  ++N L+   C  G    A E
Sbjct: 129 DIYTLSILIDCFSHLQRVDLAFS--VFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVE 186

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
            + +    EA G  +  V+TY+TI+           A  + + M  AG  PN +T++ LI
Sbjct: 187 FFDD---FEASGC-QPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILI 242

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           ++     LV +A+ +F  M      P+    N L+Q      ++  A  L    T     
Sbjct: 243 DSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIM 302

Query: 466 VALGE-----DYDGNTDRISNME--HKDKQSITNTPNFVPNSHYSSFDKRFSF------- 511
             +       D      ++S  +   K    +   P+ V    YSS    +S        
Sbjct: 303 PNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVT---YSSLMYGYSLRMEIVEA 359

Query: 512 ------------KPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILI 555
                       KP   +YNIL+K  C        K L NEM   GL+P+++++  LI
Sbjct: 360 RKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLI 417



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 53/257 (20%)

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           K M+  G+  D+ + +IL+          LA  ++ ++  L     L+ D  T++T++  
Sbjct: 119 KQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLG----LQPDAVTFNTLING 174

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                 +  A++  +D  ++G  P   T++++IN     G    A  LF++M +AGC+PN
Sbjct: 175 LCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPN 234

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
               NIL+ +  +    + A  +F S+  +K              RIS            
Sbjct: 235 VVTYNILIDSLCKDKLVNEALDIF-SYMKAK--------------RIS------------ 267

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHIS 550
                               P   TYN L++  C    +    AL+NEM ++ + PN  +
Sbjct: 268 --------------------PDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFT 307

Query: 551 WTILIDACGGSGNVEGA 567
           + +L+DA    G V  A
Sbjct: 308 FNVLVDAICKEGKVSEA 324



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 110/238 (46%), Gaps = 10/238 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIY 279
           + + + +  +  + ++V A + +DA       P+ +    +I   G C      +++ ++
Sbjct: 341 VTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIK--GYCKAKRIDEAKQLF 398

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
            ++  Q +T +   +N+L++       L+   +++KNM   G + D+ +Y++LL   C  
Sbjct: 399 NEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKE 458

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A  ++     +     LK D+  Y+ ++         + A K+  ++   G+ PN
Sbjct: 459 GYLGKAFRLF----RVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPN 514

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
              ++++IN     GL+++A+  F  M   GC P+    N++++  ++     RA +L
Sbjct: 515 VQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQL 572



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 87/188 (46%), Gaps = 6/188 (3%)

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           +++R +++ + ++    + + +N L+     A  +    +++  M   G+  D  +YN L
Sbjct: 357 VEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTL 416

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +   C  G    AQ+++   K++ + G L  D+FTYS ++  F    +   A ++   M 
Sbjct: 417 IHGLCQLGRLREAQDLF---KNMHSNGNLP-DLFTYSMLLDGFCKEGYLGKAFRLFRVMQ 472

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
           S  + P+   ++ LI+A    G ++ A  LF E+   G  PN Q    ++    +    D
Sbjct: 473 STYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLD 532

Query: 451 RAFRLFRS 458
            A   FR+
Sbjct: 533 EALEAFRN 540



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 121/293 (41%), Gaps = 49/293 (16%)

Query: 106 KFASMLSLEMVASGIVKSI-----------REGRIDCVVGVLKKLNELGVAP-----LEL 149
           K AS L  EM +  I+ +I           +EG++    GV K + E+GV P       L
Sbjct: 287 KEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSL 346

Query: 150 FDGSGFKLLKNECQRLLDSG-----EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204
             G   ++   E ++L D+      + + F     +L +     K +DE  ++    +++
Sbjct: 347 MYGYSLRMEIVEARKLFDAMITKGCKPDAFS--YNILIKGYCKAKRIDEAKQLFNEMIHQ 404

Query: 205 ---PD---VNLAIRYACIVPR---ADILFCN---------------FVREFGKKRDLVSA 240
              PD    N  I   C + R   A  LF N                +  F K+  L  A
Sbjct: 405 GLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKA 464

Query: 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300
            R +   +     P++ +   +ID     G+   +R ++ +L  Q +  N+ ++ +++N 
Sbjct: 465 FRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINN 524

Query: 301 NAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
              +  L   LE ++NM+  G   D  SYN++++      +   A ++ GE++
Sbjct: 525 LCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMR 577


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 147/340 (43%), Gaps = 39/340 (11%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           N +I  ++++     G   K+ A++ ++  + V L+   + +L++      +L    +V 
Sbjct: 488 NKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVG 547

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + + +  ++ D   YN+ +   C+ G +  A+     ++ +++ G LK D  TY+T++  
Sbjct: 548 QELTEKNLLPDAVVYNVFINCLCMLGKSKEAESF---LEEMQSTG-LKPDQVTYNTMIAA 603

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
            +       ALK+   M  + + PN IT+S+LI     AG VE+A +L  EM  +G  P 
Sbjct: 604 QSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPT 663

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED------------YDGNTDR-- 478
           S     +LQAC +  + D    +   W ++     L  D            Y+G T +  
Sbjct: 664 SLTHRRVLQACSQGRRSDLILEI-HEWMMN---AGLCADITVYNTLVRVLCYNGMTRKAM 719

Query: 479 --ISNMEHKDKQSITNTPNFVPNSHYSS--FDKRFS---------FKPTTTTYNILMKA- 524
             +  M  +     T T N +   H+ S   D  FS           P   T+N L+   
Sbjct: 720 VVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGL 779

Query: 525 -CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
                      ++NEM+  G+ P+++++ IL+   G   N
Sbjct: 780 ESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSN 819



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 137/322 (42%), Gaps = 20/322 (6%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           ++PN      +ID         +S ++  ++ S+ V +++ ++ +LM+    + K     
Sbjct: 310 AAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAK 369

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +++++        +  +Y +L+ A C AGN   A+++  E   +E K +   +V T+S+I
Sbjct: 370 DMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSE---MEEKSI-SPNVVTFSSI 425

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +       W   A     +M   G+ PN +T+ ++I+        E A+ ++ EML  G 
Sbjct: 426 INGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGV 485

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           E N    + L+    +  + ++A  LFR   +++  V L  D+   T  I          
Sbjct: 486 EVNKFIVDSLVNGLKKNGKIEKAEALFRE--MNERGVLL--DHVNYTTLI--------DG 533

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN 547
           +  T N              +  P    YN+ +   C        ++ + EM++ GL P+
Sbjct: 534 LFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPD 593

Query: 548 HISWTILIDACGGSGNVEGALQ 569
            +++  +I A    G    AL+
Sbjct: 594 QVTYNTMIAAQSREGKTAKALK 615



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 124/298 (41%), Gaps = 35/298 (11%)

Query: 289 LNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           L++  +NSL++      D++    V + M+  GV  D+  YN L+   C AG    A+++
Sbjct: 172 LDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDM 231

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
              V  ++  GV + +V TY+  +  +        A  + E+M+  GV P+ +T S+L+ 
Sbjct: 232 ---VDTMKRDGV-EPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVG 287

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-----RSWTL 461
                G   +A  LF EM + G  PN     +L+    +A + + +  L      R   +
Sbjct: 288 GLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVM 347

Query: 462 SKTQVALGEDY---DGNTDRISNMEHKDKQSITNTPNFV-----------------PNSH 501
                    D+   +G  D   +M  +   S  +TPN V                     
Sbjct: 348 DLIMYTALMDWLCKEGKIDEAKDM-FRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQV 406

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
            S  +++ S  P   T++ ++       +  KA   M EM+  G+ PN +++  +ID 
Sbjct: 407 LSEMEEK-SISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDG 463



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/326 (19%), Positives = 127/326 (38%), Gaps = 63/326 (19%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           AL+  +  K+    PN+    T+I      G   K++ +  ++ S   +        ++ 
Sbjct: 613 ALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQ 672

Query: 300 VNAHDLK--FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
             +   +    LE+++ M   G+ AD+  YN L++  C  G T  A  +   ++ +  +G
Sbjct: 673 ACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVV---LEEMSGRG 729

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
           +   D  T++ ++     +     A    + ML  G++PN  T+++L+    +AG + ++
Sbjct: 730 IAP-DTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGES 788

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
             +  EM + G EP++   +IL+    +      A RL+                     
Sbjct: 789 DMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLY--------------------- 827

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRV----- 532
               M  K                         F P  +TYN L+    +D+ +V     
Sbjct: 828 --CEMVGK------------------------GFLPKVSTYNALI----SDFSKVGMMSQ 857

Query: 533 -KALMNEMRTVGLSPNHISWTILIDA 557
            K L NEM+  G+ P   ++ IL+  
Sbjct: 858 AKELFNEMQNRGVLPTSCTYDILVSG 883



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 8/213 (3%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           G++ DL+  +  +  +    +   +Y   T++ V    G   K+  + E++  + +  + 
Sbjct: 677 GRRSDLILEIHEWMMNAGLCADITVY--NTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDT 734

Query: 292 YVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             FN+L+  +  +  L      Y  M   G+  ++A++N LL     AG    +  +  E
Sbjct: 735 ITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNE 794

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +K    K  ++    TY  +V  +        A+++  +M+  G  P   T+++LI+  +
Sbjct: 795 MK----KRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFS 850

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
             G++ QA  LF EM   G  P S   +IL+  
Sbjct: 851 KVGMMSQAKELFNEMQNRGVLPTSCTYDILVSG 883



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 12/210 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I F   +    K   L +A   YD    H  SPN+    T++      G   +S  +  +
Sbjct: 735 ITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNE 794

Query: 282 LRSQ-----NVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           ++ +     N+T +I V       N  +    + +Y  M   G +  +++YN L+     
Sbjct: 795 MKKRGIEPSNLTYDILVTGYGKQSNKVE---AVRLYCEMVGKGFLPKVSTYNALISDFSK 851

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G    A+E++ E+++   +GVL     TY  +V  ++  +      K  +DM   G +P
Sbjct: 852 VGMMSQAKELFNEMQN---RGVLPTSC-TYDILVSGWSKLRNGTEVRKFLKDMKEKGFSP 907

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +  T SS+  A +  G+  +A  L + + +
Sbjct: 908 SKGTLSSISRAFSKPGMSWEARRLLKNLYK 937


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 137/310 (44%), Gaps = 28/310 (9%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G+C  GD    R + +++ ++ V  N+  +N+ +       DL    E+   M+K GV  
Sbjct: 238 GLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVAC 297

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           ++ +Y +L+      G    AQ ++ E++    KG+ + DV+ Y++I+     +   + A
Sbjct: 298 NVVTYTLLIHGFSNIGKIEEAQRLFEEMRE---KGI-EADVYVYTSIISCNCRSGNVKRA 353

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           L + ++M   G+ P+  T+ +LI+    AG +E A  L  EM   G + N    N L+  
Sbjct: 354 LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDG 413

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNMEHKDKQSITNTPNFVPN 499
             E+   D A RL     +   +  L  D   Y+     +  +  KD+            
Sbjct: 414 YCESGMVDEALRL----QVVMEKKGLESDVFAYNSIASGLCKLNRKDE---------AKG 460

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
             +S  ++  S  P T ++  L+   C +  +   K +  EM   G  PN I++ +LID 
Sbjct: 461 LLFSMVERGVS--PNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDG 518

Query: 558 CGGSGNVEGA 567
               GN++ A
Sbjct: 519 YSKRGNMKEA 528



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 153/362 (42%), Gaps = 33/362 (9%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           +A+++  N F+  + K+ DL          +K   + N+     +I      G   +++ 
Sbjct: 261 KANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQR 320

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E++R + +  ++YV+ S+++ N  + ++K  L ++  M   G++    +Y  L+   C
Sbjct: 321 LFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVC 380

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            AG    AQ +   V  ++ KG+  L+   ++T++  + ++     AL+++  M   G+ 
Sbjct: 381 KAGQMEAAQML---VNEMQGKGI-DLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLE 436

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            +   ++S+ +        ++A  L   M++ G  PN+     L+    +   F  A R+
Sbjct: 437 SDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRV 496

Query: 456 FRSWTLSKTQVALGEDY----DGNTDRISNME--HKDKQSITNTPNFVPNSHYSSFDKRF 509
           FR     K  V     Y    DG + R  NM+  HK K  + N                 
Sbjct: 497 FREME-EKGNVPNIITYNVLIDGYSKR-GNMKEAHKLKDELENR---------------- 538

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              P   T   L+   C D     A  L +EM   GL PN +++T +I      G  E A
Sbjct: 539 GLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEA 598

Query: 568 LQ 569
            +
Sbjct: 599 FK 600



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 82/150 (54%), Gaps = 6/150 (4%)

Query: 285 QNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + V+ N   F +L+++   +  F     V++ M++ G + ++ +YN+L+      GN   
Sbjct: 468 RGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKE 527

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A ++  E   LE +G++  DV+T ++++          MALK+ ++M   G+ PN +T++
Sbjct: 528 AHKLKDE---LENRGLIP-DVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYT 583

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           ++I+  +  G  E+A  L++EM + G  P+
Sbjct: 584 AMISGLSKDGRSEEAFKLYDEMKETGLTPD 613



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 106/265 (40%), Gaps = 53/265 (20%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L  ++ M  L V   + S  I+L   C  G+  + +++  EV    AKGV K +V TY+ 
Sbjct: 214 LRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVA---AKGV-KANVVTYNA 269

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            ++ +          ++   M   GV  N +T++ LI+  +N G +E+A  LFEEM + G
Sbjct: 270 FIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKG 329

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            E +      ++     +    RA  LF                D  TD+          
Sbjct: 330 IEADVYVYTSIISCNCRSGNVKRALVLF----------------DEMTDK---------- 363

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
                   +P++H               TY  L+   C        + L+NEM+  G+  
Sbjct: 364 ------GLIPSAH---------------TYGALIHGVCKAGQMEAAQMLVNEMQGKGIDL 402

Query: 547 NHISWTILIDACGGSGNVEGALQCR 571
           N + +  LID    SG V+ AL+ +
Sbjct: 403 NPVIFNTLIDGYCESGMVDEALRLQ 427



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 101/208 (48%), Gaps = 14/208 (6%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYED--LRSQNVTLNIYVFNS----LMNVNAHDLKFT 308
           N  I  T+ID  G C   M   A+     +  + +  +++ +NS    L  +N  D    
Sbjct: 403 NPVIFNTLID--GYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKG 460

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L    +M + GV  +  S+  L+   C  GN V A+ ++ E   +E KG +  ++ TY+ 
Sbjct: 461 LLF--SMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFRE---MEEKGNVP-NIITYNV 514

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  ++     + A K+K+++ + G+ P+  T +SLI+     G V+ A+ LF+EM Q G
Sbjct: 515 LIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRG 574

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
             PN      ++    +  + + AF+L+
Sbjct: 575 LVPNVVTYTAMISGLSKDGRSEEAFKLY 602



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 83/167 (49%), Gaps = 18/167 (10%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--------VNAHD 304
           SPN     T+ID+    G++++++ ++ ++  +    NI  +N L++          AH 
Sbjct: 471 SPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHK 530

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           LK  LE        G++ D+ +   L+   C+ G   +A +++ E+     +G++  +V 
Sbjct: 531 LKDELE------NRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQ---RGLVP-NVV 580

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
           TY+ ++   +     + A K+ ++M   G+TP+   +SSL+ +  +A
Sbjct: 581 TYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSA 627


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 128/298 (42%), Gaps = 57/298 (19%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E +R      +++    L+N  A D       ++YK M KLGV+A++  YN+LL ACC
Sbjct: 158 VFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHACC 217

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +G+   A+++  E   +E K V   D+FTY+T++ ++        AL V++ M  AG++
Sbjct: 218 KSGDVEKAEKVLSE---MELKCVFP-DLFTYNTLISLYCKKGMHYEALSVQDRMEMAGIS 273

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+  T++SLI      G + +A+ LF ++      PN      L+         D A RL
Sbjct: 274 PDIFTYNSLIYGFCREGRMREAVQLFRDI--KDVTPNHVTYTSLIDGYCRVNDLDEALRL 331

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
                                          K+ ++                     PT 
Sbjct: 332 -------------------------------KEVMSEK----------------GLYPTV 344

Query: 516 TTYN-ILMKACCTDYYR-VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            TYN IL K C     R    L+NEM    + P++++   LI+A    G++  AL+ +
Sbjct: 345 ITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVK 402



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 92/190 (48%), Gaps = 8/190 (4%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD-LKF-TLEVY 312
           N+++   ++  C   GD  K+  +  ++  + V  +++ +N+L+++     + +  L V 
Sbjct: 205 NIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQ 264

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M+  G+  D+ +YN L+   C  G    A +++ ++K +    V      TY++++  
Sbjct: 265 DRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIKDVTPNHV------TYTSLIDG 318

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +        AL++KE M   G+ P  IT++S++      G +  A  L  EM +   EP+
Sbjct: 319 YCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPD 378

Query: 433 SQCCNILLQA 442
           +  CN L+ A
Sbjct: 379 NVTCNTLINA 388



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 15/223 (6%)

Query: 215 CIVPRADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GD 271
           C+ P  D+   N  +  + KK     AL   D  +    SP+++   ++I   G C  G 
Sbjct: 236 CVFP--DLFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLI--YGFCREGR 291

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNI 329
             ++  ++ D++  +VT N   + SL++     +DL   L + + M + G+   + +YN 
Sbjct: 292 MREAVQLFRDIK--DVTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNS 349

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           +L+  C  G    A  +  E+    ++  ++ D  T +T++  +      + ALKVK+ M
Sbjct: 350 ILRKLCEGGRLRDANILLNEM----SERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKM 405

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           + AG+  +  T+ +LI+    A  +++A  L   M+ AG  P+
Sbjct: 406 VGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPS 448



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 24/211 (11%)

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           S +V V+ ++K    A++V E M   G  P+    + L+N+ A   L +    ++++M++
Sbjct: 140 SWLVIVYGNSKMTHEAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVK 199

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G   N    N+LL AC ++   ++A ++     L   +    + +  NT  IS    K 
Sbjct: 200 LGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMEL---KCVFPDLFTYNT-LISLYCKK- 254

Query: 487 KQSITNTPNFVPNSHYSSFD-----KRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRT 541
                         HY +       +     P   TYN L+   C +  R++  +   R 
Sbjct: 255 ------------GMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCRE-GRMREAVQLFRD 301

Query: 542 V-GLSPNHISWTILIDACGGSGNVEGALQCR 571
           +  ++PNH+++T LID      +++ AL+ +
Sbjct: 302 IKDVTPNHVTYTSLIDGYCRVNDLDEALRLK 332


>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
 gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
          Length = 674

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 14/226 (6%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--- 287
           + +  D  S ++     +   SSPN  I  T++      G   +++ ++ ++R+  V   
Sbjct: 258 YARAGDYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPT 317

Query: 288 --TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             TL+I V      V A+D  F  EVY+ ++  G   D+A YN L+KAC   G    A++
Sbjct: 318 PVTLSILV-EMYTRVGAYDQAF--EVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAED 374

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           I  E+K    +     D  TY T +  +A       A ++ + +++    P+T  ++ +I
Sbjct: 375 ILKEMK----RAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMI 430

Query: 406 NACANAGLVEQAMHLFEEMLQAG-CEPNSQCCNILLQACVEACQFD 450
            AC  AG +EQA  +F+EM+++G C P+ +   +LL +C+   + D
Sbjct: 431 RACKLAGEIEQASKIFDEMMESGCCSPDERVSGMLL-SCMAMAKND 475



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 127/297 (42%), Gaps = 55/297 (18%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           S  + E++  + +  + Y F++L+N        +  L+ ++ M+  G++ D  +YN ++ 
Sbjct: 162 SEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVID 221

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
                G    A E+Y ++K +      KLD  TY  I  V+A A  +Q  +++ ++M  +
Sbjct: 222 MYGRVGRVNEAVELYEKLKSVN----WKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDS 277

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G +PN +  ++L+   + AG V QA  +F EM  +G  P     +IL++       +D+A
Sbjct: 278 GSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQA 337

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
           F ++ +    KT+                                             +K
Sbjct: 338 FEVYETL---KTE--------------------------------------------GWK 350

Query: 513 PTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                YN LMKAC       + + ++ EM+  G +P+H+++   ++     G V+ A
Sbjct: 351 CDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPA 407



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 6/224 (2%)

Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
           R    AL+ ++  K     P+     ++ID+ G  G   ++  +YE L+S N  L+   +
Sbjct: 192 RQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTY 251

Query: 295 NSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
            ++ NV   A D +  +++ + M+  G   +    N L+     AG    A++++ E++ 
Sbjct: 252 GAIANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMR- 310

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
               GV    V T S +V+++     +  A +V E + + G   +   ++SL+ AC   G
Sbjct: 311 --TSGVSPTPV-TLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGG 367

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            VEQA  + +EM +AGC P+       +         D A R+F
Sbjct: 368 RVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMF 411



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 116/261 (44%), Gaps = 33/261 (12%)

Query: 310 EVYKNMQKLG-VMADMASYNILLKA---CCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVF 364
           EV K +QK G V A + S++  L A     +  N    ++     + L+A+  L +++ +
Sbjct: 85  EVLKILQKTGNVEAALESWDKSLSAKNIVTVLNNINRWEKALAFFEWLKARPELYEINRY 144

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY+ ++K+  + +  +++ K+ E+M   G+ P+  T+S+LIN        E+A+  FE M
Sbjct: 145 TYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERM 204

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFR-----SWTLSKTQVALGEDYDGNTDRI 479
              G  P+    N ++       + + A  L+      +W L    V  G         I
Sbjct: 205 KSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLD--TVTYGA--------I 254

Query: 480 SNMEHK--DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKAL 535
           +N+  +  D QSI      + +S  S         P     N LM          + K +
Sbjct: 255 ANVYARAGDYQSIIQLVQEMRDSGSS---------PNAVIMNTLMGTLSKAGKVNQAKKV 305

Query: 536 MNEMRTVGLSPNHISWTILID 556
            NEMRT G+SP  ++ +IL++
Sbjct: 306 FNEMRTSGVSPTPVTLSILVE 326


>gi|298705959|emb|CBJ29080.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 692

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 142/344 (41%), Gaps = 54/344 (15%)

Query: 206 DVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK--HLSSPNMYICRTII 263
           D  + +      P  +  F + ++     +    AL   D  ++  +   P  Y C   I
Sbjct: 329 DDKVGVLLTAETPPGEKFFLSELKAAANTKSWERALNLLDGMREAGYAPHPGAYAC--AI 386

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD 323
             CG  G +  S A+ +++RS  V                            +   VMA 
Sbjct: 387 RACGKAGKWEHSLALMDEMRSSGVEPG-------------------------EGCNVMA- 420

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
                  LKAC  AG   L ++  G +K + A GV + +  T+   +K   DA  W+ AL
Sbjct: 421 -------LKACADAG---LWEKTLGMLKDMRASGVNRSES-TFVVAMKACGDAGRWEEAL 469

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
            V +DM   G+ P   T+++ + AC + G  EQA+ LF+EM   G  P  QC    ++AC
Sbjct: 470 AVMDDMRRDGIPPMETTYTTAMKACGSVGKWEQALKLFDEMKDIGIAPTEQCYTAAIRAC 529

Query: 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
            +A + ++A  L     L +   A G   + ++ R +   +       +    + ++   
Sbjct: 530 AKADKAEKASSL-----LLQMCSAPGVSTNMSSFRAAMDAYCRAGDWASALRLLEDA--- 581

Query: 504 SFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLS 545
              +R+  KP T     +++AC     + R  +L+ EMR+ G++
Sbjct: 582 ---RRYQLKPNTADLRTMVEACGKAEQHERALSLLEEMRSEGMN 622


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 134/329 (40%), Gaps = 57/329 (17%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV------ 341
           N  +FNSL++   NA D  +  ++ K M   G      +YNI + + C  G  +      
Sbjct: 176 NPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSIC-GGEELPSPDLL 234

Query: 342 -LAQEIYGE--------------------------------VKHLEAKGVLKLDVFTYST 368
            LA+++Y E                                +K +  KG +  D  TYS 
Sbjct: 235 ALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVP-DTSTYSK 293

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++    +A   + A  + ++M S GV P+  T++ LI++   AGL+EQA   F+EM   G
Sbjct: 294 VITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIG 353

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRIS 480
           C  N      LL A ++A Q  +A  +F           T++ + +  G    G   +  
Sbjct: 354 CSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKAC 413

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNE 538
            +  K    +  T + V +  Y       S  P   TY  L+   C  +  V A  L++ 
Sbjct: 414 EVYTK----LIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDA 469

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGA 567
           M + G  PNHI +  LID     G ++ A
Sbjct: 470 MLSNGCEPNHIIYDALIDGFCKVGKIDNA 498



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 134/321 (41%), Gaps = 39/321 (12%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++Y    +ID     G   ++R+ ++++RS   + N+  + +L++  + A  L    +
Sbjct: 320 NPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASD 379

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M   G   +  +Y+ L+   C AG    A E+Y ++                 T  
Sbjct: 380 IFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKL---------------IGTSD 424

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            V +D  +        E   +  + PN +T+ +LI+    A  V  A  L + ML  GCE
Sbjct: 425 NVGSDFYF--------EGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCE 476

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN    + L+    +  + D A  +F    L  ++          T  I  M  KD++  
Sbjct: 477 PNHIIYDALIDGFCKVGKIDNAQEVF----LRMSKCGYLPTVHTYTSLIDAM-FKDRR-- 529

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNH 548
            +    V +    S     S  P   TY  ++   C   +  +   L++ M   G SPN 
Sbjct: 530 LDLAMKVLSQMVES-----SCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNV 584

Query: 549 ISWTILIDACGGSGNVEGALQ 569
           +++T LID  G SG V+ +LQ
Sbjct: 585 VTYTALIDGLGKSGKVDLSLQ 605



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 110/235 (46%), Gaps = 15/235 (6%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           K R L  A++      +   +PN+     +ID  G+C  G+  K+  +   +  +  + N
Sbjct: 526 KDRRLDLAMKVLSQMVESSCTPNVVTYTAMID--GLCRIGECQKALKLLSMMEEKGCSPN 583

Query: 291 IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           +  + +L++    +  +  +L+++  M   G   +  +Y +L+  CC AG    A  +  
Sbjct: 584 VVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLS 643

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E+K       L+     Y ++V+ F+  K +  +L + E++ S G  P    +  LI+  
Sbjct: 644 EMKQTYWPKYLQ----GYCSVVQGFS--KKFIASLGLLEELESHGTVPIAPVYGLLIDNF 697

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNI---LLQACVEACQFDRAFRLFRSWT 460
           + AG +E+A+ L +EM++     N    ++   L+QA   A Q ++AF L+   T
Sbjct: 698 SKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEIT 752



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 6/188 (3%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           D + S   +E   + ++  N+  + +L++    AH +    E+   M   G   +   Y+
Sbjct: 424 DNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYD 483

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            L+   C  G    AQE++     +   G L   V TY++++      +   +A+KV   
Sbjct: 484 ALIDGFCKVGKIDNAQEVF---LRMSKCGYLP-TVHTYTSLIDAMFKDRRLDLAMKVLSQ 539

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M+ +  TPN +T++++I+     G  ++A+ L   M + GC PN      L+    ++ +
Sbjct: 540 MVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGK 599

Query: 449 FDRAFRLF 456
            D + +LF
Sbjct: 600 VDLSLQLF 607



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 12/214 (5%)

Query: 249 KHLSS--PNMYICRTIIDVCGICGDY--MKSRAIYEDLRSQNVTLNIYVFNSLMN--VNA 302
           KH  S  PN+     +ID  G+C  +  + ++ + + + S     N  ++++L++     
Sbjct: 435 KHTDSIAPNVVTYGALID--GLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKV 492

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
             +    EV+  M K G +  + +Y  L+ A        LA ++  ++     +     +
Sbjct: 493 GKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQM----VESSCTPN 548

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V TY+ ++         Q ALK+   M   G +PN +T+++LI+    +G V+ ++ LF 
Sbjct: 549 VVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFI 608

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +M   GC PN     +L+  C  A   D A  L 
Sbjct: 609 QMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLL 642



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 10/198 (5%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           K   +V A    DA   +   PN  I   +ID  G C  G    ++ ++  +        
Sbjct: 456 KAHKVVDAQELLDAMLSNGCEPNHIIYDALID--GFCKVGKIDNAQEVFLRMSKCGYLPT 513

Query: 291 IYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           ++ + SL++    D  L   ++V   M +     ++ +Y  ++   C  G     Q+   
Sbjct: 514 VHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGE---CQKALK 570

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            +  +E KG    +V TY+ ++     +    ++L++   M + G  PN +T+  LIN C
Sbjct: 571 LLSMMEEKGC-SPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHC 629

Query: 409 ANAGLVEQAMHLFEEMLQ 426
             AGL+++A  L  EM Q
Sbjct: 630 CAAGLLDEAHSLLSEMKQ 647



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 121/308 (39%), Gaps = 42/308 (13%)

Query: 294 FNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L+ V   A  +     V K M + G   D  +     +A C  G        + +  
Sbjct: 43  YNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGR-------WSDAL 95

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            +  +   KLD    + ++    +A  +  A+     M      PN +T+ +L+      
Sbjct: 96  VMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKK 155

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR------------SW 459
             +     +   M++ GC PN    N L+ +   A  +  A++L +            ++
Sbjct: 156 KQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAY 215

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSIT--------NTPNFVPN-SHYSSFDKRF- 509
            +    +  GE+   + D ++  E   ++ +         NT NF         FD  F 
Sbjct: 216 NIFIGSICGGEELP-SPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQ 274

Query: 510 --------SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACG 559
                    F P T+TY+ ++   C      KA  L  EM++VG++P+  ++TILID+  
Sbjct: 275 IIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFC 334

Query: 560 GSGNVEGA 567
            +G +E A
Sbjct: 335 KAGLIEQA 342


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 150/334 (44%), Gaps = 40/334 (11%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           +SP  Y    ++D+ G    +  +  + + ++S+ V + ++ F++L+   V A      +
Sbjct: 176 ASPEPY--NEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAV 233

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
             +  M+  G   DM +++I++ + C       AQ  +  +KH       + DV  Y+++
Sbjct: 234 HAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHR-----FEPDVVVYTSL 288

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           V  +  A     A +V  DM  AG+ PN  T+S +I++    G + +A  +F EM+ AGC
Sbjct: 289 VHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGC 348

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISN 481
           +PN+   N L++  V+A + ++  +++           T+S   +      D N +  + 
Sbjct: 349 DPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAK 408

Query: 482 ----MEHKDKQSITNTPNFV------------PNSHYSSFDKRFSFKPTTTTYNILMK-- 523
               M  K      +T NF+             +  Y+   K  + +P T TYNILM+  
Sbjct: 409 ILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARM-KELNCQPNTLTYNILMRMF 467

Query: 524 --ACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
             +  TD   V  +  EM    + PN  ++ ILI
Sbjct: 468 AESRSTDM--VLKMKKEMDESQVEPNVNTYRILI 499



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 115/264 (43%), Gaps = 34/264 (12%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +++ + V  + +  D+  A   +   K     PN+Y    +ID    CG   ++  ++ +
Sbjct: 283 VVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSE 342

Query: 282 LRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC---- 335
           +       N   FNSLM  +V A   +  L+VY  M++LG  AD  SYN ++++ C    
Sbjct: 343 MIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDEN 402

Query: 336 ---------------LAGNTVLAQEIYGEVKHL-EAKGVLKL-----------DVFTYST 368
                          +A N      I+G +  L +  G  ++           +  TY+ 
Sbjct: 403 LEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNI 462

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++++FA+++   M LK+K++M  + V PN  T+  LI+   +      A  L  EM++  
Sbjct: 463 LMRMFAESRSTDMVLKMKKEMDESQVEPNVNTYRILISMFCDMKHWNNAYKLMMEMVEEK 522

Query: 429 C-EPNSQCCNILLQACVEACQFDR 451
           C  PN      +L+   +A Q  +
Sbjct: 523 CLRPNLSVYETVLELLRKAGQLKK 546



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 109/252 (43%), Gaps = 19/252 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   +    KKR    A   +D S KH   P++ +  +++      GD  K+  ++ D
Sbjct: 249 VAFSIVISSLCKKRRANEAQSFFD-SLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSD 307

Query: 282 LRSQNVTLNIYVFNSLMN--------VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           ++   +  N+Y ++ +++          AHD      V+  M   G   +  ++N L++ 
Sbjct: 308 MKMAGIKPNVYTYSIVIDSLCRCGQITRAHD------VFSEMIDAGCDPNAVTFNSLMRV 361

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
              AG T    ++Y ++K L        D  +Y+ I++     +  + A K+   M+  G
Sbjct: 362 HVKAGRTEKVLKVYNQMKRLGCPA----DTISYNFIIESHCRDENLEEAAKILNLMVKKG 417

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           V PN  T++ +    A    V  A  ++  M +  C+PN+   NIL++   E+   D   
Sbjct: 418 VAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVL 477

Query: 454 RLFRSWTLSKTQ 465
           ++ +    S+ +
Sbjct: 478 KMKKEMDESQVE 489


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 144/319 (45%), Gaps = 32/319 (10%)

Query: 249 KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLK 306
           +HL +PN++    +ID     G+ +++RA++  +++   + ++  +NSL++      +L+
Sbjct: 192 EHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELE 251

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
               +   M+K G  AD+ +YN L+      G    A   +GE+K L   GV+  +V T 
Sbjct: 252 EVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRL---GVMA-NVVTL 307

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           ST V  F      + A+K+   M   G+ PN  T++SL++    AG ++ A+ L +EM+ 
Sbjct: 308 STFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVH 367

Query: 427 AGCEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
            G  PN     +++   C E                   +VA+ +D     +R     ++
Sbjct: 368 QGLVPNVVTYTVMVDGLCKEG------------------KVAVADDVLSLMERAGVKANE 409

Query: 486 DKQSITNTPNFVPNSHYSSFD-----KRFSFKPTTTTYNILMKACC--TDYYRVKALMNE 538
              +     +F+  +   + D     K    +   + Y  L+   C        K+L+++
Sbjct: 410 LLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHK 469

Query: 539 MRTVGLSPNHISWTILIDA 557
           M   GL PN + +T ++DA
Sbjct: 470 MDDCGLRPNTVIYTTIMDA 488



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 92/445 (20%), Positives = 177/445 (39%), Gaps = 57/445 (12%)

Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF 224
           L D G ++  V  +  + + R+P         +++L  N+    L  R    +P  ++  
Sbjct: 143 LADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQG-GLVRRLFEHLPAPNVFT 201

Query: 225 CNFVREF-GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
            N V +F  K+ +LV A   +   K    SP++    ++ID  G CG+  +   +  ++R
Sbjct: 202 FNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMR 261

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKF-----TLEVYKNMQKLGVMADMASYNILLKACCLAG 338
                 ++  +N+L+N  +   KF         +  M++LGVMA++ + +  + A C  G
Sbjct: 262 KSGCAADVVTYNALINCFS---KFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEG 318

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A +++ +++    +G++  + FTY+++V     A     A+ + ++M+  G+ PN 
Sbjct: 319 LVREAMKLFAQMR---VRGMMP-NEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNV 374

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +T++ +++     G V  A  +   M +AG + N      L+         +RA  L   
Sbjct: 375 VTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNE 434

Query: 459 -----------------WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
                            W L K Q           D   ++ HK           +  + 
Sbjct: 435 MKNKGMELDVSLYGTLIWGLCKVQ---------KLDEAKSLLHKMDDCGLRPNTVIYTTI 485

Query: 502 YSSFDKRF---------------SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGL 544
             +F K                   +P   TY  L+   C     Y   +  ++MR +GL
Sbjct: 486 MDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGL 545

Query: 545 SPNHISWTILIDACGGSGNVEGALQ 569
            PN   +T LID     G++  A+ 
Sbjct: 546 DPNVQVYTTLIDGFCKIGSLSKAVH 570



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 73/389 (18%), Positives = 150/389 (38%), Gaps = 63/389 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +    FV  F K+  +  A++ +   +     PN +   +++D     G    +  + ++
Sbjct: 305 VTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDE 364

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q +  N+  +  +++    + K  +  +V   M++ GV A+   Y  L+    +  N
Sbjct: 365 MVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKN 424

Query: 340 TVLAQEIYGEVKHL-----------------------EAKGVL-KLD-------VFTYST 368
           +  A ++  E+K+                        EAK +L K+D          Y+T
Sbjct: 425 SERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTT 484

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I+  F  A     A+ +   +  +G+ PN +T+ +LI+    AG + +A+  F++M + G
Sbjct: 485 IMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELG 544

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHK 485
            +PN Q    L+    +     +A  L        +S  +V      DG      +M+  
Sbjct: 545 LDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDG------HMKQG 598

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY-------RVKALMNE 538
           D Q               +F  +     T    ++    C    +         + +++E
Sbjct: 599 DLQ--------------GAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSE 644

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGA 567
           M   G++P+  ++  LI      GN+E A
Sbjct: 645 MIGTGITPDKTAYNCLIRKYQKLGNMEEA 673



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 157/367 (42%), Gaps = 44/367 (11%)

Query: 74  YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV 133
           Y  +     K GRL++ A+++   +V +G V    ++++  ++  G+ K   EG++    
Sbjct: 342 YTSLVDGTCKAGRLDD-AIVLLDEMVHQGLVP---NVVTYTVMVDGLCK---EGKVAVAD 394

Query: 134 GVLKKLNELGVAPLELFDGS---GFKLLKNECQRLLD------SGEVEMFVGLMEVLEEF 184
            VL  +   GV   EL   +   G  + KN  +R LD      +  +E+ V L   L   
Sbjct: 395 DVLSLMERAGVKANELLYTTLIHGHFMNKNS-ERALDLLNEMKNKGMELDVSLYGTLIWG 453

Query: 185 RLPVKELDEEFRIVQL---CVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241
              V++LDE   ++     C  +P+    + Y  I+   D  F     + GK+ + V+ L
Sbjct: 454 LCKVQKLDEAKSLLHKMDDCGLRPNT---VIYTTIM---DAFF-----KAGKESEAVALL 502

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
                S      PN+     +ID  G+C  G   ++ + ++ +R   +  N+ V+ +L++
Sbjct: 503 HKIPDSGLQ---PNVVTYCALID--GLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLID 557

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                  L   + +   M   G+  D   Y  L+      G+  L      + K +E   
Sbjct: 558 GFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGD--LQGAFALKAKMIETG- 614

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            L+LD++ Y+  +  F +    Q A  V  +M+  G+TP+   ++ LI      G +E+A
Sbjct: 615 -LQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEA 673

Query: 418 MHLFEEM 424
             L  EM
Sbjct: 674 SSLQNEM 680


>gi|440794290|gb|ELR15456.1| pentatricopeptide repeat domain/PPR repeatcontaining protein,
           partial [Acanthamoeba castellanii str. Neff]
          Length = 551

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 130/312 (41%), Gaps = 60/312 (19%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----NAHDLKFTL 309
           ++ I  T+I +    GD+ +  A+ + +R + +   +  + +L+       + H     L
Sbjct: 62  DVAIFSTLIKIFAAGGDWARCEALMQHMRDEKIKPTVVTYTNLLKYCERVESWHKAAEVL 121

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E  K  +  G+  D+  Y  ++  CC   +   A  +  E+++   +GV K ++FTY+++
Sbjct: 122 EQMK-AEAPGLKPDVVFYTAMVNVCCKRNDLTQALRVLAEMRN---EGV-KPNIFTYASL 176

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-G 428
           V +    K  + AL + E+M    + PN   ++SLIN C     +  AM LF++M +   
Sbjct: 177 VNICEREKNLKKALDLLEEMKDENIQPNVYIYTSLINVCEKKRDLVTAMKLFDDMTRLYR 236

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
             PN+   N LL  CVE    DR   +                                 
Sbjct: 237 IRPNTFTFNSLLNVCVEKRDLDRGMEVL-------------------------------- 264

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
           ++      VPN               T+T+N L   C       K   L+  M+T G+SP
Sbjct: 265 ALMRQHQVVPN---------------TSTFNSLASLCAKTGNAAKGLELLATMKTTGVSP 309

Query: 547 NHISWTILIDAC 558
           +++++T LI AC
Sbjct: 310 DNLTFTSLIAAC 321



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +C  V  + K  +++  ++A     K    P++     +++VC    D  ++  +  ++R
Sbjct: 107 YCERVESWHKAAEVLEQMKAEAPGLK----PDVVFYTAMVNVCCKRNDLTQALRVLAEMR 162

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           ++ V  NI+ + SL+N+     +LK  L++ + M+   +  ++  Y  L+  C    + V
Sbjct: 163 NEGVKPNIFTYASLVNICEREKNLKKALDLLEEMKDENIQPNVYIYTSLINVCEKKRDLV 222

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A +++ ++  L     ++ + FT+++++ V  + +     ++V   M    V PNT T+
Sbjct: 223 TAMKLFDDMTRLYR---IRPNTFTFNSLLNVCVEKRDLDRGMEVLALMRQHQVVPNTSTF 279

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           +SL + CA  G   + + L   M   G  P++     L+ AC
Sbjct: 280 NSLASLCAKTGNAAKGLELLATMKTTGVSPDNLTFTSLIAAC 321



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 94/238 (39%), Gaps = 29/238 (12%)

Query: 233 KKRDLVSALRAY-DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           KKRDLV+A++ + D ++ +   PN +   ++++VC    D  +   +   +R   V  N 
Sbjct: 217 KKRDLVTAMKLFDDMTRLYRIRPNTFTFNSLLNVCVEKRDLDRGMEVLALMRQHQVVPNT 276

Query: 292 YVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACC---LAGNTVLAQEI 346
             FNSL ++ A   +    LE+   M+  GV  D  ++  L+ AC      GN       
Sbjct: 277 STFNSLASLCAKTGNAAKGLELLATMKTTGVSPDNLTFTSLIAACRARDTEGNDAADTAD 336

Query: 347 YGEVKHLEAKGVLKL------------------DVFTYSTIVKVFADAKWWQMALKV--- 385
               +  E+     L                  D  T  T++ V   ++    AL+    
Sbjct: 337 STAAQARESTASPPLEQALSLLDRMQREFNVAPDNITLITLMSVCLRSRRLGYALRAYGQ 396

Query: 386 --KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
              E   +  +  +   +  L+N CA  G   + + +  +M  AG  P+ +  N  L+
Sbjct: 397 AKAELARNRALQLDKENYYELVNLCAKNGQWRRGLEIVSDMENAGLTPSVRIYNSFLR 454


>gi|357140623|ref|XP_003571864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Brachypodium distachyon]
          Length = 751

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 86/149 (57%), Gaps = 4/149 (2%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +++++ M +LG+     SYN +LKA    G   +A+ IY     + A GV   D+ TY+T
Sbjct: 196 VKLFRLMPELGITRTALSYNAVLKAILCRGREAMARRIYNA---MIADGVAP-DLSTYNT 251

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F  ++  + A++V  DM   GVTP+  T+++LINA    G +E A  +F+EM  AG
Sbjct: 252 LIWGFGLSEKMEAAVRVFGDMKGHGVTPDVTTYNNLINAWVRNGDLESARKVFDEMPGAG 311

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
            E NS   N++++  VEA + + A  LF+
Sbjct: 312 FERNSVSYNVMIKGYVEAKKVEEAVGLFK 340



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 4/130 (3%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +Y  M   GV  D+++YN L+    L+     A  ++G++K     GV   DV TY+ ++
Sbjct: 233 IYNAMIADGVAPDLSTYNTLIWGFGLSEKMEAAVRVFGDMK---GHGVTP-DVTTYNNLI 288

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +      + A KV ++M  AG   N+++++ +I     A  VE+A+ LF+EM + G  
Sbjct: 289 NAWVRNGDLESARKVFDEMPGAGFERNSVSYNVMIKGYVEAKKVEEAVGLFKEMGEKGLR 348

Query: 431 PNSQCCNILL 440
            + +    L+
Sbjct: 349 SSEKTFAALM 358



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 19/187 (10%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASY 327
           G+  K+   +  L  + V  +   FNSL+  +A +  L+   E+   M + GV  D  S+
Sbjct: 480 GNTKKAETFFRQLMKKGVD-DKLAFNSLIRGHAKEGVLEAAQEILAIMTRRGVPTDPISH 538

Query: 328 NILLKACCLAGNTVLAQEIYG---EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            +L+ +         A+       E  HL +  + K      S +V +F D +  Q A +
Sbjct: 539 TLLVDSFLKKNEPADAKTALDSMMEQGHLPSPALFK------SVMVALFDDGRV-QTASR 591

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           V   M+  GVT N      ++ A    G V++A+     M++ GC P+      L +  V
Sbjct: 592 VMRSMIEKGVTENMDMAHKILEALFMRGHVDEAIGRVNLMVENGCMPD------LDKLLV 645

Query: 445 EACQFDR 451
             CQ D+
Sbjct: 646 ALCQKDK 652


>gi|449458656|ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Cucumis sativus]
          Length = 1108

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 98/460 (21%), Positives = 183/460 (39%), Gaps = 81/460 (17%)

Query: 124 IREGRIDCVVGVLKKLNELGVAPL-ELFDGSGFKLLKNECQRLLDSGEVEMFVGLME--V 180
           ++ GR+   + +L+ + + G+  + +++ G  F    N C+      E   +  L++   
Sbjct: 429 LKGGRLHDCIRILQDMEKEGILDMNKIYHGKFF----NICKSKKAVQEAFQYTALIQNPT 484

Query: 181 LEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI-----LFCNFVREFGKKR 235
           L  F +          ++ +C +  D   A +   +V  A +     L+   +   GK  
Sbjct: 485 LSTFNM----------LMSVCASSQDSERAFQVVRLVQEAGMKADCKLYTTLISTCGKSG 534

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295
            + +    +         PN++    +ID C       K+  +Y  +RS+NV  +  VFN
Sbjct: 535 KVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGVYGIMRSKNVKPDRVVFN 594

Query: 296 SLMNV----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +L+       A D  F +      +   +  D  +   L+KAC  AG    A+E+Y  + 
Sbjct: 595 ALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKACANAGQVDRAREVYKMIH 654

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
             + KG  ++    Y+  V   + +  W  A  + +DM   GV P+ I  S+LI+   +A
Sbjct: 655 DYKIKGTPEV----YTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDEIFLSALIDVAGHA 710

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
           G ++ A  +  E    G        + L+ AC  A  + +A  L+             ED
Sbjct: 711 GKLDAAFEVLGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALY-------------ED 757

Query: 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR 531
                                              K    + T +T N L+ A  +D  +
Sbjct: 758 L----------------------------------KSMKLRLTVSTVNALITA-LSDGEQ 782

Query: 532 VKALMN---EMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           ++  M+   EM+ +GLSPN+I+++IL  A   + ++E AL
Sbjct: 783 LQMAMDILTEMKELGLSPNNITYSILTAASDRNNDLEIAL 822



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 8/194 (4%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLE 310
           +P +Y     ++ C    D+  +  IY+D+  + V  +    ++L++V  H   L    E
Sbjct: 661 TPEVYTI--AVNCCSQSCDWDFASNIYQDMTRKGVQPDEIFLSALIDVAGHAGKLDAAFE 718

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V    + LG+   + SY+ L+ AC  A N   A  +Y ++K ++    L+L V T + ++
Sbjct: 719 VLGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYEDLKSMK----LRLTVSTVNALI 774

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
              +D +  QMA+ +  +M   G++PN IT+S L  A      +E A+ L  +  + G  
Sbjct: 775 TALSDGEQLQMAMDILTEMKELGLSPNNITYSILTAASDRNNDLEIALMLLSQAKEDGIV 834

Query: 431 PNSQCCNILLQACV 444
           P       ++  C+
Sbjct: 835 PTLTMYRCIIGMCL 848


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 167/378 (44%), Gaps = 37/378 (9%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAI 278
           + ++   +  F  K DLVSA R +D  ++   + +     T+I+  G+C  G+  ++  +
Sbjct: 364 EAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLIN--GLCRAGELKEAEKV 421

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCL 336
            +++ ++ + ++   +  L++      K     +V+  M + GV  ++ +Y  L    C 
Sbjct: 422 LQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCK 481

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G+   A E+  E+ +   KG L+L+  TY++++     A +   A++   DM +AG+ P
Sbjct: 482 QGDVQAANELLHEMSN---KG-LELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKP 537

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +  T+++LI+A   +G +++A  L +EML  G +P     N+L+     + + +   +L 
Sbjct: 538 DVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLL 597

Query: 457 RSWTLSKT-------------QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
             W L K              Q  +G +    T+    M  ++ +   NT N +   H  
Sbjct: 598 -EWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCK 656

Query: 504 SFDKRFS-----------FKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHIS 550
           +   + +           F+ T ++Y+ L++       +   + L ++MR  G +     
Sbjct: 657 ARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDV 716

Query: 551 WTILIDACGGSGNVEGAL 568
           +   ID      N+E  L
Sbjct: 717 YNFYIDFNFNEDNLEATL 734



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 101/251 (40%), Gaps = 29/251 (11%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           ++ SYNILLK  C AG    A++++ E+           DV TY  ++  +      + A
Sbjct: 261 NVCSYNILLKVLCGAGRVEDARQLFDEM-------ASPPDVVTYGILIHGYCALGELENA 313

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +K+ +DM++ GV PN   ++S++    + G V  A+ + E+M+      +      +L  
Sbjct: 314 VKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSG 373

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM----EHKDKQSITNTPNFVP 498
                    A    R W     +  L  D    T  I+ +    E K+ + +        
Sbjct: 374 FCNKGDLVSA----RRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQ------ 423

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILID 556
                   +R        TY +L+   C      +A    N M   G++PN +++T L D
Sbjct: 424 ----EMLARRLDVD--EVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSD 477

Query: 557 ACGGSGNVEGA 567
                G+V+ A
Sbjct: 478 GLCKQGDVQAA 488



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 9/191 (4%)

Query: 242 RAYDASKKHLSS---PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           RA+D  ++ L +   P +     +++   + G     + + E +  +N+  N   +NSLM
Sbjct: 557 RAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLM 616

Query: 299 NVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                 +++K T E+YK M    V  +  +YNIL+K  C A +   AQ  + E   +  K
Sbjct: 617 KQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNE---MIEK 673

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  +L   +YS ++++    K +  A K+  DM   G T     ++  I+   N   +E 
Sbjct: 674 G-FRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEA 732

Query: 417 AMHLFEEMLQA 427
            + L +E+++A
Sbjct: 733 TLALCDELVEA 743



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 116/267 (43%), Gaps = 20/267 (7%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           +L+  +++  +M   GV  +   Y  ++   C  G    A  +  ++ H +    + LD 
Sbjct: 309 ELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHK----VILDE 364

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
             Y+T++  F +      A +  ++M   G+  + +T+++LIN    AG +++A  + +E
Sbjct: 365 AVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQE 424

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG-EDYDGNTDRISNM 482
           ML    + +     +L+    +  +   AF++    T+ +  VA     Y   +D +   
Sbjct: 425 MLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHN--TMVQRGVAPNVVTYTALSDGLC-- 480

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMR 540
           +  D Q+     + + N            +    TYN L+   C   Y  +A+  M +M 
Sbjct: 481 KQGDVQAANELLHEMSNK---------GLELNACTYNSLINGLCKAGYLDQAMRTMADMD 531

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGA 567
             GL P+  ++T LIDA   SG ++ A
Sbjct: 532 AAGLKPDVYTYTTLIDALCKSGELDRA 558


>gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 567

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 114/270 (42%), Gaps = 53/270 (19%)

Query: 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
           ++ +K  + V + M   G++ D ASY  L+   C  GN   A ++   V+ +E  G    
Sbjct: 110 SNKMKKAIRVMEMMISCGIIPDAASYTFLVNHLCKRGNVGYAMQL---VEKMEDSGY-PA 165

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +  TY+T+VK          +L+  + ++  G+ PN  T+SSL+ A      V +AM L 
Sbjct: 166 NTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLL 225

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
           +E++  G +PN    N+LL    +  + + A RLF+                       N
Sbjct: 226 DEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFK-----------------------N 262

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEM 539
           +  K                         F P   +YNIL+++ C +  +     L+ EM
Sbjct: 263 LPSK------------------------GFSPNVVSYNILLRSLCYEGRWEEANELLAEM 298

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGALQ 569
                SP+ +++ ILI +    G +E ALQ
Sbjct: 299 NGRERSPSIVTYNILIGSLAFHGKIEQALQ 328



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 131/280 (46%), Gaps = 41/280 (14%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           ++ + +++ + M+  G  A+  +YN L+K  C+ GN   + +    +  L  KG++  + 
Sbjct: 147 NVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQF---LDRLMQKGLVP-NA 202

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
           FTYS++++     +    A+++ +++++ G  PN ++++ L+      G +E+A+ LF+ 
Sbjct: 203 FTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKN 262

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-------RSWTLSKTQVALGE-DYDGN 475
           +   G  PN    NILL++     +++ A  L        RS ++    + +G   + G 
Sbjct: 263 LPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRERSPSIVTYNILIGSLAFHGK 322

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL 535
            ++   ++  D+  +                    FKPT T+YN ++   C +  +V+A+
Sbjct: 323 IEQA--LQVIDEMMMG------------------PFKPTATSYNPIIARLCKE-GKVEAV 361

Query: 536 MN---EMRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
           +N   +M     SPN  ++  +   C      EG +Q  F
Sbjct: 362 VNCLDQMIFGRCSPNEGTFNAIAVLC-----YEGKVQEAF 396



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/411 (19%), Positives = 161/411 (39%), Gaps = 67/411 (16%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNE-CQRLLDSGEVEMFVGLMEVLEE 183
           +  ++   + V++ +   G+ P    D + +  L N  C+R    G V   + L+E +E+
Sbjct: 109 KSNKMKKAIRVMEMMISCGIIP----DAASYTFLVNHLCKR----GNVGYAMQLVEKMED 160

Query: 184 FRLPVKELDEEFRIVQLCVNKPDVNLAIRY------ACIVPRADILFCNFVREFGKKRDL 237
              P   +     +  LC++  ++N ++++        +VP A   + + +    K+R +
Sbjct: 161 SGYPANTVTYNTLVKGLCMHG-NLNKSLQFLDRLMQKGLVPNA-FTYSSLLEAAYKERGV 218

Query: 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
             A+R  D        PN+     ++   G+C    K   I E +R              
Sbjct: 219 NEAMRLLDEIIAKGGQPNLVSYNVLL--TGLC----KEGRIEEAIR-------------- 258

Query: 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                        ++KN+   G   ++ SYNILL++ C  G    A E+  E+   E   
Sbjct: 259 -------------LFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRERSP 305

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
                + TY+ ++   A     + AL+V ++M+     P   +++ +I      G VE  
Sbjct: 306 ----SIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAV 361

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
           ++  ++M+   C PN    N +   C E  +   AF L +S   +K   ++ + Y G   
Sbjct: 362 VNCLDQMIFGRCSPNEGTFNAIAVLCYEG-KVQEAFSLIQSLG-NKQNSSIHDYYKGVVS 419

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
                       +    N  P         ++ F P + TY+ L++  C +
Sbjct: 420 -----------CLCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIE 459


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 141/324 (43%), Gaps = 56/324 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNAHDLKF-TLE 310
           +PN Y   T+I      G   ++  +++++ ++  V     ++N+L+       K  T  
Sbjct: 105 APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL 164

Query: 311 VYKN-MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +Y++ M + GV   +A+YN+L+ A  + G    A E+   V+ +  KG L  DVFTY+ +
Sbjct: 165 LYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL---VEEMGGKG-LAPDVFTYNIL 220

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + AL++ E+M   GV    +T++SLI A +  G V++   LF+E ++ G 
Sbjct: 221 INGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGI 280

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            P+    N L+ +   +   DRAF +            +GE           ME K    
Sbjct: 281 RPDLVLYNALINSHSTSGNIDRAFEI------------MGE-----------MEKK---- 313

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN 547
                                  P   TYN LM+  C        + L++EM   G+ P+
Sbjct: 314 --------------------RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPD 353

Query: 548 HISWTILIDACGGSGNVEGALQCR 571
            +++  LI      G+V+ AL+ R
Sbjct: 354 LVTYNTLISGYSMKGDVKDALRIR 377



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 101/204 (49%), Gaps = 10/204 (4%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFT 308
           +P+++    +I+  G C  G+  K+  I+E++  + V   +  + SL+        ++ T
Sbjct: 211 APDVFTYNILIN--GHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQET 268

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            +++    + G+  D+  YN L+ +   +GN   A EI GE   +E K +   DV TY+T
Sbjct: 269 DKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE---MEKKRIAPDDV-TYNT 324

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +++          A K+ ++M   G+ P+ +T+++LI+  +  G V+ A+ +  EM+  G
Sbjct: 325 LMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKG 384

Query: 429 CEPNSQCCNILLQACVEACQFDRA 452
             P     N L+Q   +  Q D A
Sbjct: 385 FNPTLLTYNALIQGLCKNGQGDDA 408



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 110/263 (41%), Gaps = 59/263 (22%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++ +M +L +     ++NI+L+  C AG    A E+  ++    A         TY+T++
Sbjct: 28  LFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNA--------VTYNTVI 79

Query: 371 KVFADAKWWQMALKVKEDMLS-AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG- 428
             F      Q AL +  +M    G+ PN  T+ ++I+     G V++A+ +F+EML  G 
Sbjct: 80  AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 139

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            +P +   N L+    +  + D A  L+R   + +  VA+                    
Sbjct: 140 VKPEAVMYNALIGGYCDQGKLDTAL-LYRDRMVER-GVAM-------------------- 177

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
                                    T  TYN+L+ A   D    +A  L+ EM   GL+P
Sbjct: 178 -------------------------TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAP 212

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
           +  ++ ILI+     GNV+ AL+
Sbjct: 213 DVFTYNILINGHCKEGNVKKALE 235



 Score = 42.0 bits (97), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 34/188 (18%), Positives = 81/188 (43%), Gaps = 6/188 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + + + +    KK  +    + +D + +    P++ +   +I+     G+  ++  I  +
Sbjct: 250 VTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 309

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  +   +N+LM        +    ++   M K G+  D+ +YN L+    + G+
Sbjct: 310 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGD 369

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  I  E+ +   KG     + TY+ +++          A  + ++M+  G+TP+  
Sbjct: 370 VKDALRIRNEMMN---KG-FNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 425

Query: 400 TWSSLINA 407
           T+ SLI  
Sbjct: 426 TYISLIEG 433


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 150/333 (45%), Gaps = 24/333 (7%)

Query: 240 ALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNS 296
           A+  +D  +K ++  P+     T+I   G+C +   ++A  I+E+ R     L+++ ++S
Sbjct: 387 AIELWDLLEKDVACIPDTVTFGTLIH--GLCQNGFANKAFTIFEEARVSGKQLDVFSYSS 444

Query: 297 LMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           ++N   N   L   ++VY+ M K G   +   YN L+   C    T  A  IY ++    
Sbjct: 445 MINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKM---- 500

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
           A       V TY+T++     A+ +Q A  V  +M+  G TP+  T+ SLI    +   +
Sbjct: 501 ADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKI 560

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG 474
           + A+ +++++L  G + +    NIL+     A + D A  +F      K        Y+ 
Sbjct: 561 DDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNT 620

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRV 532
             D +    + DK +          + ++S  +    +P   +YN  +K  C+    +  
Sbjct: 621 LMDGLYETGYIDKAA----------TLWTSITED-GLEPDIISYNTRIKGLCSCDRIHEG 669

Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
             L++E+ + G+ P  I+W IL+ A    G ++
Sbjct: 670 IQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 151/378 (39%), Gaps = 58/378 (15%)

Query: 233 KKRDLVSALRAYDA-SKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTL 289
           K  +    +R +D   K   + PN+     ++D  G+C  G + +   ++E + + N+  
Sbjct: 240 KAGEFEKVMRVWDKLVKDPGARPNLATYNVMLD--GLCKFGRFKEVGEVWERMVANNLQP 297

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           ++  +  L++    + D+     VY  + K G++ D A YN L+K  C AG    A + +
Sbjct: 298 DVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFW 357

Query: 348 GE---------------VKHLEAKGVLK----------------LDVFTYSTIVKVFADA 376
                            +K L   G++                  D  T+ T++      
Sbjct: 358 DSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQN 417

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
            +   A  + E+   +G   +  ++SS+IN   N G +  A+ ++E+M + GC+PNS   
Sbjct: 418 GFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIY 477

Query: 437 NILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
           N L+    +  +   A R++        S T +     Y+   D +   E K +++ +  
Sbjct: 478 NALISGFCQVYRTSDAVRIYSKMADNGCSPTVIT----YNTLIDGLCKAE-KYQEASSVA 532

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISW 551
              V N           F P  TTY  L++   +D     AL    ++   GL  + +  
Sbjct: 533 REMVEN----------GFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMH 582

Query: 552 TILIDACGGSGNVEGALQ 569
            ILI     +G V+ AL 
Sbjct: 583 NILIHGLCSAGKVDEALH 600



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 102/252 (40%), Gaps = 48/252 (19%)

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
           LG    + S+N LL A   A     A   +  + H      +  ++ TY+ +++      
Sbjct: 113 LGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARG 172

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
               A+ + + +    V P+ IT+S+L+   A    ++ A+ L +EM ++G +P+  C N
Sbjct: 173 DLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYN 232

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
            LL  C +A +F++  R++                    D++     KD  +        
Sbjct: 233 ALLGGCFKAGEFEKVMRVW--------------------DKLV----KDPGA-------- 260

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILI 555
                         +P   TYN+++   C    +  V  +   M    L P+ I++ ILI
Sbjct: 261 --------------RPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILI 306

Query: 556 DACGGSGNVEGA 567
                SG+V+GA
Sbjct: 307 HGLCRSGDVDGA 318



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 7/209 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVNAHD-LKFTLE 310
           +PN+     ++      GD  ++  +++ LR + V  +   +++LM  +   D L   L+
Sbjct: 155 APNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALD 214

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE-VKHLEAKGVLKLDVFTYSTI 369
           +   M + GV  D+  YN LL  C  AG       ++ + VK   A+  L     TY+ +
Sbjct: 215 LLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLA----TYNVM 270

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +        ++   +V E M++  + P+ IT+  LI+    +G V+ A  ++ E+++ G 
Sbjct: 271 LDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGL 330

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRS 458
             ++   N L++   +A +   A++ + S
Sbjct: 331 VIDAAMYNSLVKGFCQAGRVQEAWKFWDS 359


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 161/364 (44%), Gaps = 36/364 (9%)

Query: 221 DILFCNF-VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRA 277
           D+   NF +    K  +   A++ ++  +    +P+++   T+I   G+C  G+  K+R 
Sbjct: 96  DVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVIS--GLCKSGNLEKARE 153

Query: 278 IYEDL--RSQNVTLNIYVFNSLMNVNA---HDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           + E++  R      +I  +N+L+N       D++  LE+   M+  G   D+ +YN ++ 
Sbjct: 154 LLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIH 213

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           A C+AG  V A EI   +           D+ T++T++  F  A     AL+V E+M   
Sbjct: 214 ALCVAGRVVEAAEILKTMS-------CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRE 266

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            + P+ IT++ L+N     G V+ A +L EE+++ G  P+      L+    ++ + + A
Sbjct: 267 NILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEA 326

Query: 453 FRLFRSWTLSKTQVALGEDYDGN------TDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
            +L +  +  +    L E    N      T  I         SI+   + +     S   
Sbjct: 327 HKLVKEMSAREI---LAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLI-----SDLV 378

Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDACGGSGN 563
            R  + P   TYN L+   C    RV+    L +EM ++G  PN ++   ++      G 
Sbjct: 379 AR-GYVPDVVTYNTLIDGLCK-ANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGR 436

Query: 564 VEGA 567
           V+ A
Sbjct: 437 VDDA 440



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 139/318 (43%), Gaps = 36/318 (11%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLG 319
           ++D+    G   ++  +Y+DL     + N+  F  L+  N  A      LE  + + +  
Sbjct: 33  LLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFS 92

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           V  D+  +N L+      GN   A +++   +++E+  V   D+FTY+T++     +   
Sbjct: 93  VAPDVYIFNFLIHGLFKDGNPDQAVKLF---ENMESSRV-NPDIFTYNTVISGLCKSGNL 148

Query: 380 QMALKVKEDMLSAG--VTPNTITWSSLINA--CANAGLVEQAMHLFEEMLQAGCEPNSQC 435
           + A ++ E+M+  G    P+ +T+++LINA  C + G VE+A+ + + M  AG  P+   
Sbjct: 149 EKARELLEEMIRRGGKSAPDIVTYNTLINAGICKD-GDVEEALEILDGMKLAGPAPDVIT 207

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
            N ++ A   A +   A  + ++ + S   V      DG     + M  +  + +     
Sbjct: 208 YNSIIHALCVAGRVVEAAEILKTMSCSPDLVTFNTLLDGFCK--AGMLPRALEVLEEMC- 264

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACC------TDYYRVKALMNEMRTVGLSPNHI 549
                       R +  P   TY IL+   C        +Y    L+ E+   G  P+ I
Sbjct: 265 ------------RENILPDVITYTILVNGLCRVGQVQVAFY----LLEEIVRQGYIPDVI 308

Query: 550 SWTILIDACGGSGNVEGA 567
           ++T L+D    SG +E A
Sbjct: 309 AYTSLVDGLCKSGEIEEA 326



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 31/217 (14%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           K DV +Y+ ++ +   +       KV +D+L +G +PN +T+  LI     AG   +A+ 
Sbjct: 24  KHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALE 83

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ--------VALGED 471
               + +    P+    N L+    +    D+A +LF +   S+          V  G  
Sbjct: 84  FLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLC 143

Query: 472 YDGNTDRISN-MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA-CCTDY 529
             GN ++    +E   ++   + P+ V                   TYN L+ A  C D 
Sbjct: 144 KSGNLEKARELLEEMIRRGGKSAPDIV-------------------TYNTLINAGICKDG 184

Query: 530 YRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNV 564
              +AL  ++ M+  G +P+ I++  +I A   +G V
Sbjct: 185 DVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRV 221



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 18/208 (8%)

Query: 258 ICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYK 313
           I  TI+ V G+C  G    +  + E++  Q    ++  + SL++    + +++   ++ K
Sbjct: 273 ITYTIL-VNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVK 331

Query: 314 NMQKLGVMADMAS---------YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            M    ++A+M S         YNI+L      G+   A  +   +  L A+G +  DV 
Sbjct: 332 EMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSL---ISDLVARGYVP-DVV 387

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY+T++     A   + A  + ++M S G  PN +T  S++      G V+ A  L  EM
Sbjct: 388 TYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEM 447

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRA 452
            +    PN      L+    ++ + D A
Sbjct: 448 SRKRHAPNVVVYTSLIDGLCKSDRMDDA 475


>gi|356563451|ref|XP_003549976.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 714

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 7/206 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL--MNVNAHDLKFTLEV 311
           P+      I+DV    G   +  ++YE  R+     +   F+ L  M   A D      V
Sbjct: 257 PDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYV 316

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M+ +GV  ++  YN LL+A   AG  V A+ ++ E+  L   G++  +  T + ++K
Sbjct: 317 FQEMESVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEMIEL---GIVPNEK-TLTAVIK 372

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-AGCE 430
           ++  A+W + AL++ + M   G   + I +++L+N CA+ GLVE+A  LF +M Q A C+
Sbjct: 373 IYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSAHCK 432

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
           P+S     +L         D+A +LF
Sbjct: 433 PDSWSYTAMLNIYGSQGDVDKAMKLF 458



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I F    + FG+  D       +   +     PN+ +  T+++  G  G  + +R ++E+
Sbjct: 295 ITFSVLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEE 354

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    +  N     +++ +   A   +  LE+++ M++ G   D   YN LL  C   G 
Sbjct: 355 MIELGIVPNEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGL 414

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ ++ ++K        K D ++Y+ ++ ++        A+K+  +M  +GV  N +
Sbjct: 415 VEEAETLFRDMKQ---SAHCKPDSWSYTAMLNIYGSQGDVDKAMKLFNEMCKSGVELNVM 471

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            ++ LI     A   +  + +F   ++ G +P+ + C  LL
Sbjct: 472 GFTCLIQCLGRATEFDDLVRVFGISVERGIKPDDRLCGCLL 512



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M K  +M D  +Y+ +L      G     +E+    +   A G  K D  T+S + K
Sbjct: 247 FERMYKTSLMPDEVTYSAILDVYARLGK---VEEVISLYERGRATG-WKPDPITFSVLGK 302

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +F +A  +     V ++M S GV PN + +++L+ A   AG    A  LFEEM++ G  P
Sbjct: 303 MFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEMIELGIVP 362

Query: 432 NSQCCNILLQ 441
           N +    +++
Sbjct: 363 NEKTLTAVIK 372



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 91/245 (37%), Gaps = 53/245 (21%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN+ +K+        L +E+     H      + LD  TYSTI+        +  A+   
Sbjct: 192 YNVTMKSLRFGKQFGLIEEL----AHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWF 247

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           E M    + P+ +T+S++++  A  G VE+ + L+E     G +P+    ++L +   EA
Sbjct: 248 ERMYKTSLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEA 307

Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
                                   DYDG       ME     S+   PN V         
Sbjct: 308 G-----------------------DYDGIRYVFQEME-----SVGVQPNLV--------- 330

Query: 507 KRFSFKPTTTTYNILMKACCTDYYRV--KALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
                      YN L++A       V  + L  EM  +G+ PN  + T +I   G +   
Sbjct: 331 ----------VYNTLLEAMGKAGKPVFARGLFEEMIELGIVPNEKTLTAVIKIYGKARWS 380

Query: 565 EGALQ 569
             AL+
Sbjct: 381 RDALE 385


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 195/459 (42%), Gaps = 66/459 (14%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           REGR+   V +L ++ E G+ P ++  G+   ++   C+     G+    + L+  +EE 
Sbjct: 189 REGRVVEAVALLDRMVEDGLQPNQITYGT---IVDGMCKM----GDTVSALNLLRKMEEV 241

Query: 185 RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244
                      RI      KP+V   + Y+ I+   D L+ +     G++ D   A   +
Sbjct: 242 S----------RI------KPNV---VIYSAII---DGLWKD-----GRQTD---AQNLF 271

Query: 245 DASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302
              ++   SPN++    +I+  G C  G + +++ +  ++  + ++ ++  F+ L+N   
Sbjct: 272 SEMQEKGISPNLFTYNCMIN--GFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALV 329

Query: 303 HDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
            + KF    E+Y  M   G++ +  +YN ++           A+ ++    +L A     
Sbjct: 330 KEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMF----YLMATKGCS 385

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            DV T+S ++  +  AK     +K+  +M   G+  NTIT+++LI+     G +  A+ L
Sbjct: 386 PDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDL 445

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
            +EM+ +G  PN   CN LL       +   A  +F+    SK  +     +        
Sbjct: 446 LQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPF-------- 497

Query: 481 NMEHKDKQS-------ITNTPNFVPNSH-YSSFDKRFSFKPTTTTYNILMKACCTDYYRV 532
           N    D Q+       + N   F      Y     R    P T TYN ++   C      
Sbjct: 498 NDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHR-GLVPDTITYNSVIDGLCKQSRLD 556

Query: 533 KA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +A  + + M + G SP+ +++T LI+     G V   L+
Sbjct: 557 EATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLE 595



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 153/379 (40%), Gaps = 36/379 (9%)

Query: 202 VNKPDVNLAI-------RYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254
           + +PDV +++       R  C +    IL    ++ F     L  AL  +    K    P
Sbjct: 89  MERPDVVISLHRKMEMRRIPCNIYSFTIL----IKCFCSCSKLPFALSTFGKITKLGFHP 144

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVY 312
           ++    T++   G+C +   S A++     Q    N+  F +LMN    + +    + + 
Sbjct: 145 SLVTFSTLLH--GLCVEDRVSEALH--FFHQICKPNVIAFTTLMNGLCREGRVVEAVALL 200

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M + G+  +  +Y  ++   C  G+TV A  +   ++ +E    +K +V  YS I+  
Sbjct: 201 DRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNL---LRKMEEVSRIKPNVVIYSAIIDG 257

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                    A  +  +M   G++PN  T++ +IN   ++G   +A  L  EM +    P+
Sbjct: 258 LWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPD 317

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
               ++L+ A V+  +F  A  L+    L +  +     Y+   D  S     D      
Sbjct: 318 VVTFSVLINALVKEGKFFEAEELYNEM-LPRGIIPNTITYNSMIDGFSKQNRLDAAE--- 373

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHI 549
                    Y    K  S  P   T++IL+   C    RV     L++EM   GL  N I
Sbjct: 374 ------RMFYLMATKGCS--PDVITFSILIDGYC-GAKRVDDGMKLLHEMSRRGLVANTI 424

Query: 550 SWTILIDACGGSGNVEGAL 568
           ++T LI      GN+  AL
Sbjct: 425 TYTTLIHGFCQLGNLNAAL 443



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 109/230 (47%), Gaps = 27/230 (11%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSS---PNMYICRTIIDVCGIC--GDYMKSR 276
           I +   +  F +  +L +AL   D  ++ +SS   PN+  C T++D  G+C  G    + 
Sbjct: 424 ITYTTLIHGFCQLGNLNAAL---DLLQEMISSGVCPNVVTCNTLLD--GLCNNGKLKDAL 478

Query: 277 AIYEDLRSQNVTLN-----------IYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMAD 323
            +++ ++   + L+           +  +N L+    ++ KF+   E+Y+ M   G++ D
Sbjct: 479 EMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPD 538

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
             +YN ++   C       A +++     + +KG    DV T++T++  +         L
Sbjct: 539 TITYNSVIDGLCKQSRLDEATQMF---DSMGSKG-FSPDVVTFTTLINGYCKVGRVGDGL 594

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           +V  +M   G+  N IT+ +LI+     G +  A+ +F+EM+ +G  P++
Sbjct: 595 EVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDT 644



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 86/186 (46%), Gaps = 14/186 (7%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMY------ICRTIIDVCGIC--GDYMKSRAIYEDLR 283
           GK +D +   +    SK  L + + +      +    I +CG+   G + ++  +YE++ 
Sbjct: 472 GKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMP 531

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            + +  +   +NS+++       L    +++ +M   G   D+ ++  L+   C  G   
Sbjct: 532 HRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVG 591

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
              E++ E+     +G++  +  TY T++  F        AL + ++M+S+GV P+TIT 
Sbjct: 592 DGLEVFCEMGR---RGIVA-NAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITI 647

Query: 402 SSLINA 407
            +++  
Sbjct: 648 RNMLTG 653


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 97/468 (20%), Positives = 196/468 (41%), Gaps = 60/468 (12%)

Query: 132 VVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL 191
           +V ++K L++ G     +F      L  N     LD   +E+FV ++    ++ +  K L
Sbjct: 139 LVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLL 198

Query: 192 DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL 251
           D+               + ++   +  RA   +   +  + +      A+  ++  K+  
Sbjct: 199 DK---------------IPLQEYLLDVRA---YTTILHAYSRTGKYEKAIDLFERMKEMG 240

Query: 252 SSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFT 308
            SP +     I+DV G  G  + K   + +++RS+ +  + +  +++++  A +  L+  
Sbjct: 241 PSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREA 300

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            E +  ++  G      +YN LL+    AG    A  +  E++          D  TY+ 
Sbjct: 301 KEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPA----DSVTYNE 356

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +V  +  A + + A  V E M   GV PN IT++++I+A   AG  ++A+ LF  M +AG
Sbjct: 357 LVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAG 416

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF------------RSWTLSKTQVALGEDYDGNT 476
           C PN+   N +L    +  + +   ++              +W    T +AL    +   
Sbjct: 417 CVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWN---TMLALCG--NKGM 471

Query: 477 DRISNMEHKDKQSITNTPNF-VPNSHYSSFDK---------------RFSFKPTTTTYNI 520
           D+  N   ++ +S    P+    N+  S++ +               R  F    TTYN 
Sbjct: 472 DKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNA 531

Query: 521 LMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
           L+ A     D+   + ++++M++ G  P   S+++++      GN  G
Sbjct: 532 LLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLG 579



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 11/199 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +L  NF     K R L  + RA+   KKH   P+M I  +++ +      Y ++  I E 
Sbjct: 602 LLLANF-----KCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILES 656

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R   ++ ++  +NSLM+  V   +     E+ K ++K  +  D+ SYN ++K  C  G 
Sbjct: 657 IREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRG- 715

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             L QE    +  +  +G+ +  +FTY+T V  +     +     V E M      PN +
Sbjct: 716 --LMQEAVRMLSEMTERGI-RPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNEL 772

Query: 400 TWSSLINACANAGLVEQAM 418
           T+  +++    AG   +AM
Sbjct: 773 TFKMVVDGYCRAGKYSEAM 791



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE--V 311
           P+  + RT++     C     S   +   +      ++ +FNS++++   +  +     +
Sbjct: 594 PSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGI 653

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            +++++ G+  D+ +YN L+      G    A+EI   +K LE K  LK D+ +Y+T++K
Sbjct: 654 LESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEI---LKTLE-KSQLKPDLVSYNTVIK 709

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F      Q A+++  +M   G+ P   T+++ ++     G+  +   + E M +  C P
Sbjct: 710 GFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRP 769

Query: 432 NSQCCNILLQACVEACQFDRA 452
           N     +++     A ++  A
Sbjct: 770 NELTFKMVVDGYCRAGKYSEA 790



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/316 (17%), Positives = 129/316 (40%), Gaps = 38/316 (12%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           PN     T+ID  G  G   ++  ++  ++      N   +N+++++     +    +++
Sbjct: 384 PNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKM 443

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
             +M+  G   + A++N +L  C   G       ++ E+K        + D  T++T++ 
Sbjct: 444 LCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCG----FEPDRDTFNTLIS 499

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +        A K+  +M  AG      T+++L+NA A  G      ++  +M   G +P
Sbjct: 500 AYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKP 559

Query: 432 NSQCCNILLQACVEACQF---------DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
                +++LQ   +   +          +  ++F SW L +T +            ++N 
Sbjct: 560 TETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLL------------LANF 607

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMR 540
           + +             +    +  K+  +KP    +N ++     +  Y + + ++  +R
Sbjct: 608 KCR---------ALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIR 658

Query: 541 TVGLSPNHISWTILID 556
             GLSP+ +++  L+D
Sbjct: 659 EDGLSPDLVTYNSLMD 674


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 118/250 (47%), Gaps = 10/250 (4%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           +IL C     + K+  +  A+  +   ++H  +PN+    T+IDV    G    +   +E
Sbjct: 380 NILIC----AYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFE 435

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +  + +T NI V+ SL++            E+   M   G+  +   +N ++ + C  G
Sbjct: 436 QMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEG 495

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
             + +++++     L  +  +K D+ TY+T++     A     A K+   M+S GV P+ 
Sbjct: 496 RVIESEKLF----DLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDI 551

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +T+ +LIN       ++ A+ LF+EM+ +G  PN    NI+LQ      +   A  L+ S
Sbjct: 552 VTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVS 611

Query: 459 WTLSKTQVAL 468
            T S TQ+ L
Sbjct: 612 ITKSGTQLEL 621



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 111/216 (51%), Gaps = 6/216 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           +PN+ +  ++I     C  + K+  +  ++  + + LN   FNS+++ +  + +   + +
Sbjct: 443 TPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 502

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M ++GV  D+ +YN L+  CCLAG    A ++   +  + + GV K D+ TY T++
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL---LASMVSVGV-KPDIVTYGTLI 558

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +        AL + ++M+S+GV+PN IT++ ++    +      A  L+  + ++G +
Sbjct: 559 NGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQ 618

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
                 NI+L    +    D A R+F++  L+  Q+
Sbjct: 619 LELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 654



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 130/310 (41%), Gaps = 48/310 (15%)

Query: 267 GICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMA 322
           G C       AI   + +RS  V  N+  ++SLMN    + + T   +++ +M K G+  
Sbjct: 280 GYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 339

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+A+Y  LL+     G  V   E++  +  +   G+ + D   ++ ++  +A  +    A
Sbjct: 340 DIATYRTLLQGYATKGALV---EMHALLDLMVRNGI-QPDHHVFNILICAYAKQEKVDQA 395

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           + V   M   G+ PN + + ++I+    +G V+ AM  FE+M+  G  PN      L+  
Sbjct: 396 MLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHG 455

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF--VPNS 500
                ++D+A  L                          +E  D+    NT  F  + +S
Sbjct: 456 LCTCDKWDKAEELI-------------------------LEMLDRGICLNTIFFNSIIDS 490

Query: 501 HYSS---------FD--KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
           H            FD   R   KP   TYN L+  CC      +A  L+  M +VG+ P+
Sbjct: 491 HCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 550

Query: 548 HISWTILIDA 557
            +++  LI+ 
Sbjct: 551 IVTYGTLING 560



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 153/345 (44%), Gaps = 35/345 (10%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           S P++    T+++     GD  K+ + Y ++  + +  ++  ++S++     A  +   +
Sbjct: 197 SPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAM 256

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           EV   M K GVM D  +YN +L   C +G     +E  G +K + + GV + +V TYS++
Sbjct: 257 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQ---PKEAIGTLKKMRSDGV-EPNVVTYSSL 312

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+ + M   G+ P+  T+ +L+   A  G + +   L + M++ G 
Sbjct: 313 MNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYD-----GNT-DRIS 480
           +P+    NIL+ A  +  + D+A  +F   R   L+   V  G   D     G+  D + 
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 432

Query: 481 NMEHKDKQSITNTPNFVPNSHY-------SSFDKRFSFK---------PTTTTYNILMKA 524
             E    + +  TPN +  +           +DK                T  +N ++ +
Sbjct: 433 YFEQMIDEGL--TPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDS 490

Query: 525 CCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            C +   +++  L + M  +G+ P+ I++  LID C  +G ++ A
Sbjct: 491 HCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEA 535



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 127/295 (43%), Gaps = 50/295 (16%)

Query: 311 VYKNMQKLGVMADMASYNILLKACC---------------------------LAGNTVL- 342
           V + M +LG + D+ SYN LLK  C                           ++ NTVL 
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209

Query: 343 -------AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
                  + + Y     +  +G+L  DV TYS+I+     A+    A++V   M+  GV 
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILP-DVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVM 268

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +T++S+++   ++G  ++A+   ++M   G EPN    + L+    +  +   A ++
Sbjct: 269 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKI 328

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           F S T        G + D  T R     +  K ++      +          R   +P  
Sbjct: 329 FDSMT------KRGLEPDIATYRTLLQGYATKGALVEMHALL------DLMVRNGIQPDH 376

Query: 516 TTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             +NIL+ A        +A++  ++MR  GL+PN + +  +ID    SG+V+ A+
Sbjct: 377 HVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM 431



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 6/164 (3%)

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           D R      ++  +N+++N      D       Y  M   G++ D+ +Y+ ++ A C A 
Sbjct: 191 DDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQ 250

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A E+   +  +   GV+  D  TY++I+  +  +   + A+   + M S GV PN 
Sbjct: 251 AMDKAMEV---LNTMVKNGVMP-DCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNV 306

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +T+SSL+N     G   +A  +F+ M + G EP+      LLQ 
Sbjct: 307 VTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG 350



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 126/315 (40%), Gaps = 39/315 (12%)

Query: 287 VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           VT  ++ +  L+     A  L        N+ K G   D  ++  LLK  C    T  A 
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE---DMLSAGVTPNTITW 401
           +I   ++ +   G +  DVF+Y+ ++K   D    Q AL++     D    G  P+ +++
Sbjct: 148 DIV--LRRMTELGCIP-DVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 204

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT- 460
           ++++N     G  ++A   + EML  G  P+    + ++ A  +A   D+A  +  +   
Sbjct: 205 NTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK 264

Query: 461 -------LSKTQVALGEDYDGNT-DRISNMEHKDKQSITNTPNFVPNSH----------- 501
                  ++   +  G    G   + I  +  K  +S    PN V  S            
Sbjct: 265 NGVMPDCMTYNSILHGYCSSGQPKEAIGTL--KKMRSDGVEPNVVTYSSLMNYLCKNGRS 322

Query: 502 ------YSSFDKRFSFKPTTTTYNILMKACCTDYYRVK--ALMNEMRTVGLSPNHISWTI 553
                 + S  KR   +P   TY  L++   T    V+  AL++ M   G+ P+H  + I
Sbjct: 323 TEARKIFDSMTKR-GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNI 381

Query: 554 LIDACGGSGNVEGAL 568
           LI A      V+ A+
Sbjct: 382 LICAYAKQEKVDQAM 396



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/268 (19%), Positives = 112/268 (41%), Gaps = 41/268 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I F + +    K+  ++ + + +D   +    P++    T+ID C + G   ++  +   
Sbjct: 482 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLAS 541

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S  V  +I  + +L+N       +   L ++K M   GV  ++ +YNI+L+       
Sbjct: 542 MVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRR 601

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV-------------KVFADAKWWQMALKVK 386
           T  A+E+Y  +     K   +L++ TY+ I+             ++F +     + L+ +
Sbjct: 602 TAAAKELYVSI----TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR 657

Query: 387 ------------------EDMLSA----GVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
                             +D+ +A    G+ P+  T+S +       G +E+   LF  M
Sbjct: 658 TFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSM 717

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRA 452
            + GC  +S+  N +++  ++     RA
Sbjct: 718 EENGCSADSRMLNSIVRKLLQRGDITRA 745


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 168/413 (40%), Gaps = 46/413 (11%)

Query: 181 LEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD------------------I 222
           + ++   V  L ++  +  L  N   +N+ I   C++   D                  I
Sbjct: 103 MRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTII 162

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYE 280
            F   +    K  +   AL  +D        P++Y   TII+  G+C  G+   +  + +
Sbjct: 163 TFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIIN--GLCKMGETAAAAGLIK 220

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +       ++  +++L++    D  +   L+++  M+  G+   + SY  L++  C   
Sbjct: 221 KMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFS 280

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A  +  E+  L     +  D+ T+S ++ +F        A  V + M   GV PN 
Sbjct: 281 RWKEASAMLNEMTSLN----IMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNV 336

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           IT++SL++  +    V +A  LF+ M+  GC+P+    +IL+       + D A +LF  
Sbjct: 337 ITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNE 396

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQ--SITNTPNFVPNSHYSSFDKRFSFKPTTT 516
                    + +    NT   + + H   Q   +        + H + +       P   
Sbjct: 397 M--------IHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGY------LPDLC 442

Query: 517 TYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           TY++L++  C   Y  KA  L   M+   L PN + +TILID+   SGN+  A
Sbjct: 443 TYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHA 495



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 155/345 (44%), Gaps = 34/345 (9%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIY 279
           + +   +    K R +  AL  +   K    SP +    ++I   G+C    + ++ A+ 
Sbjct: 232 VTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQ--GLCSFSRWKEASAML 289

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE---VYKNMQKLGVMADMASYNILLKACCL 336
            ++ S N+  +I  F+ L+++   +    LE   V K M ++GV  ++ +YN L+    L
Sbjct: 290 NEMTSLNIMPDIVTFSLLIDIFCKEGN-VLEAQGVLKTMTEMGVEPNVITYNSLMHGYSL 348

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
               V A++++     +  +G  K DVF+YS ++  +   K    A ++  +M+  G+TP
Sbjct: 349 QMEVVEARKLFDV---MITRGC-KPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTP 404

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           NT+++++LI+A    G + +A  LF++M   G  P+    ++LL+   +     +AFRLF
Sbjct: 405 NTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLF 464

Query: 457 RSW--TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF--SFK 512
           R+   T  K  + +      +  +  N+ H  K                 F + F    +
Sbjct: 465 RAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKL----------------FSELFVHGLQ 508

Query: 513 PTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
           P    Y  ++   C +    +AL    +M   G  PN  S+ ++I
Sbjct: 509 PDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVII 553



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/236 (18%), Positives = 113/236 (47%), Gaps = 6/236 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I + + +  +  + ++V A + +D        P+++    +I+   +     +++ ++ +
Sbjct: 337 ITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNE 396

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q +T N   + +L++       L+   E++K+M   G + D+ +Y++LL+  C  G 
Sbjct: 397 MIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGY 456

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  ++  ++       LK ++  Y+ ++     +     A K+  ++   G+ P+  
Sbjct: 457 LGKAFRLFRAMQ----GTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQ 512

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            ++++IN     GL+++A+  F +M + GC PN    N++++  ++     RA +L
Sbjct: 513 IYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQL 568



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           +EG +    GVLK + E+GV P  +   S           L+    ++M     EV+E  
Sbjct: 313 KEGNVLEAQGVLKTMTEMGVEPNVITYNS-----------LMHGYSLQM-----EVVEAR 356

Query: 185 RLPVKELDEEFRIVQLCVNKPDV---NLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241
           +L       +  I + C  KPDV   ++ I   C+V R D                  A 
Sbjct: 357 KL------FDVMITRGC--KPDVFSYSILINGYCMVKRID-----------------EAK 391

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-- 299
           + ++       +PN     T+I      G   ++R +++D+ +     ++  ++ L+   
Sbjct: 392 QLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGF 451

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
                L     +++ MQ   +  ++  Y IL+ + C +GN   A++++ E   L   G L
Sbjct: 452 CKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSE---LFVHG-L 507

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           + DV  Y+TI+           AL+    M   G  PN  +++ +I          +A+ 
Sbjct: 508 QPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQ 567

Query: 420 LFEEMLQAG 428
           L  EM   G
Sbjct: 568 LIGEMRDKG 576


>gi|242037347|ref|XP_002466068.1| hypothetical protein SORBIDRAFT_01g000640 [Sorghum bicolor]
 gi|241919922|gb|EER93066.1| hypothetical protein SORBIDRAFT_01g000640 [Sorghum bicolor]
          Length = 722

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 97/189 (51%), Gaps = 2/189 (1%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           PN+++   +++  G  G    +R ++E++  Q V  N     +L  +   A   +  L++
Sbjct: 332 PNIFVYNALLEALGKTGKPGLARNLFEEMVEQGVDPNARTLTALAKIYGRARWGRDALQL 391

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M++L + AD    N LL  C   G    A++++ E+K  E + V K D ++Y+ ++ 
Sbjct: 392 WDKMRELKLPADNILCNTLLSMCADVGLVNEAEQLFNEMKDPECRDVPKPDKWSYTAMIN 451

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           ++        AL++  +ML  G+ PN ++++ +I     A  ++QA+ + E  L+ G +P
Sbjct: 452 IYGSNGDTDRALQLFGEMLKGGIEPNIMSYTIVIQCLGKAQRIQQAVEVLEAGLEKGLKP 511

Query: 432 NSQCCNILL 440
           + + C  LL
Sbjct: 512 DDRLCGCLL 520



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 126/303 (41%), Gaps = 35/303 (11%)

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKL-GVMADMASYNILLKACCLA 337
           D+    V L+   +++L+       +F   +E ++ M    GV+ D  +Y+ +L      
Sbjct: 218 DMLDAGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQL 277

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G   + +E+          G  K D   ++ + K+F +A  ++    V ++M   G+ PN
Sbjct: 278 G---MKEEVLALFDRARGSG-WKPDHVAFAVLAKMFGEAGDYEGIQFVFKEMTEVGIKPN 333

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
              +++L+ A    G    A +LFEEM++ G +PN++    L +    A     A +L+ 
Sbjct: 334 IFVYNALLEALGKTGKPGLARNLFEEMVEQGVDPNARTLTALAKIYGRARWGRDALQLWD 393

Query: 458 SW---------TLSKTQVALGEDYD--GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
                       L  T +++  D       +++ N E KD +        VP     S+ 
Sbjct: 394 KMRELKLPADNILCNTLLSMCADVGLVNEAEQLFN-EMKDPEC-----RDVPKPDKWSY- 446

Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
                   T   NI      TD  R   L  EM   G+ PN +S+TI+I   G +  ++ 
Sbjct: 447 --------TAMINIYGSNGDTD--RALQLFGEMLKGGIEPNIMSYTIVIQCLGKAQRIQQ 496

Query: 567 ALQ 569
           A++
Sbjct: 497 AVE 499



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 76/210 (36%), Gaps = 50/210 (23%)

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  +LD   ++  +K    A+ W  A ++  DML AGV  + IT+S+LI A        +
Sbjct: 187 GAFQLDTIFFNVALKSLRAARQWPHAERLALDMLDAGVPLDNITYSTLITAARRCRQFAK 246

Query: 417 AMHLFEEMLQA-GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
           A+  FE M  A G  P+    + +L    +    +    LF                   
Sbjct: 247 AVEWFERMYAADGVLPDEVTYSAVLDVYAQLGMKEEVLALF------------------- 287

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVK 533
            DR                            +   +KP    + +L K      DY  ++
Sbjct: 288 -DRA---------------------------RGSGWKPDHVAFAVLAKMFGEAGDYEGIQ 319

Query: 534 ALMNEMRTVGLSPNHISWTILIDACGGSGN 563
            +  EM  VG+ PN   +  L++A G +G 
Sbjct: 320 FVFKEMTEVGIKPNIFVYNALLEALGKTGK 349


>gi|449445409|ref|XP_004140465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
 gi|449518107|ref|XP_004166085.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
          Length = 578

 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 144/320 (45%), Gaps = 38/320 (11%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV---YKNMQKLGVMADMASYNILLKAC 334
           + E +R      N++    L+N  A D + T  V   YK M ++GV+ ++  YN+L+ AC
Sbjct: 142 VLEYMRLHGFKPNLHACTVLLNSLAKD-RLTDTVWKSYKKMIRVGVVPNIHIYNVLIHAC 200

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C +G+   A+++  E   +E K V   D++TY+T++ +++       AL V++ M  AGV
Sbjct: 201 CKSGDVEKAEQLVCE---MELKSVFP-DLYTYNTLISLYSRKSLHYEALCVQDRMERAGV 256

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           +P+ +T++SLI      G + +A+ LF E+      PN      L+        F+ A R
Sbjct: 257 SPDIVTYNSLIYGFCKEGKMREAVKLFREI--KDVSPNHVTYTTLIDGYCRVNDFEEALR 314

Query: 455 LFRSWTLSKTQVAL-------------GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
           L +        + +             G   D N   ++ M  +  +    T N + N++
Sbjct: 315 LCKVMEAKGLHLGVATYNSVLRKLCEEGRIRDAN-KLLNEMGERKVEPDNVTCNTLINAY 373

Query: 502 YSSFDKRFSFKPTTT-----------TYNILMKACC--TDYYRVKALMNEMRTVGLSPNH 548
               D + + K  +            TY  L+   C   D    K L+  M  VGLSP +
Sbjct: 374 CKIGDMKSALKVKSKMLDAGLQLDSFTYKALIHGFCWVRDMESAKELLFCMLDVGLSPGY 433

Query: 549 ISWTILIDACGGSGNVEGAL 568
            +++ L+D     GN EGA+
Sbjct: 434 CTYSWLVDGYCELGN-EGAI 452



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 121/265 (45%), Gaps = 31/265 (11%)

Query: 203 NKPDVN------LAIRYA-CIVPRADILFCNFVREFGKKRDLV----------------S 239
           + PDVN      L I Y  C +P+  I    ++R  G K +L                 +
Sbjct: 114 DNPDVNAHILSWLMIIYVNCKMPQDAIQVLEYMRLHGFKPNLHACTVLLNSLAKDRLTDT 173

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
             ++Y    +    PN++I   +I  C   GD  K+  +  ++  ++V  ++Y +N+L++
Sbjct: 174 VWKSYKKMIRVGVVPNIHIYNVLIHACCKSGDVEKAEQLVCEMELKSVFPDLYTYNTLIS 233

Query: 300 VNAH-DLKF-TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
           + +   L +  L V   M++ GV  D+ +YN L+   C  G    A +++ E+K +    
Sbjct: 234 LYSRKSLHYEALCVQDRMERAGVSPDIVTYNSLIYGFCKEGKMREAVKLFREIKDVSPNH 293

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
           V      TY+T++  +     ++ AL++ + M + G+     T++S++      G +  A
Sbjct: 294 V------TYTTLIDGYCRVNDFEEALRLCKVMEAKGLHLGVATYNSVLRKLCEEGRIRDA 347

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQA 442
             L  EM +   EP++  CN L+ A
Sbjct: 348 NKLLNEMGERKVEPDNVTCNTLINA 372



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 26/210 (12%)

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           S ++ ++ + K  Q A++V E M   G  PN    + L+N+ A   L +     +++M++
Sbjct: 124 SWLMIIYVNCKMPQDAIQVLEYMRLHGFKPNLHACTVLLNSLAKDRLTDTVWKSYKKMIR 183

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G  PN    N+L+ AC ++   ++A +L     L   +    + Y  NT  IS    K 
Sbjct: 184 VGVVPNIHIYNVLIHACCKSGDVEKAEQLVCEMEL---KSVFPDLYTYNT-LISLYSRK- 238

Query: 487 KQSITNTPNFVPNSHYSSF---DK--RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEM 539
                       + HY +    D+  R    P   TYN L+   C +    +A  L  E+
Sbjct: 239 ------------SLHYEALCVQDRMERAGVSPDIVTYNSLIYGFCKEGKMREAVKLFREI 286

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           + V  SPNH+++T LID      + E AL+
Sbjct: 287 KDV--SPNHVTYTTLIDGYCRVNDFEEALR 314



 Score = 46.2 bits (108), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 117/272 (43%), Gaps = 24/272 (8%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYE 280
           L   F +E GK R+ V   R          SPN     T+ID  G C   D+ ++  + +
Sbjct: 266 LIYGFCKE-GKMREAVKLFREIKDV-----SPNHVTYTTLID--GYCRVNDFEEALRLCK 317

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            + ++ + L +  +NS++     +  ++   ++   M +  V  D  + N L+ A C  G
Sbjct: 318 VMEAKGLHLGVATYNSVLRKLCEEGRIRDANKLLNEMGERKVEPDNVTCNTLINAYCKIG 377

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           +   A ++  + K L+A   L+LD FTY  ++  F   +  + A ++   ML  G++P  
Sbjct: 378 DMKSALKV--KSKMLDAG--LQLDSFTYKALIHGFCWVRDMESAKELLFCMLDVGLSPGY 433

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            T+S L++     G     + L +E L  G   +   C  L++      +   A +++ +
Sbjct: 434 CTYSWLVDGYCELGNEGAIISLLDEFLTKGYCVDLSVCRALIRRLCHQERVGFAEKIYST 493

Query: 459 WTLSK--------TQVALGEDYDGNTDRISNM 482
             L          T +A     DG ++ +S M
Sbjct: 494 MHLRGVSGDSVIYTSLAYAYWKDGKSNLVSEM 525


>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Cucumis sativus]
          Length = 962

 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 105/212 (49%), Gaps = 6/212 (2%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           +KR +  A +  D       SPN +   TI+      GD  K+   +  LR + + L++Y
Sbjct: 638 EKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVY 697

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            + +L+     +  ++  L V K M    +  +   YNIL+      G+   A ++   +
Sbjct: 698 TYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADL---M 754

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + ++ +GV + D+ TY++ +   + A   Q A K  E+M S GV PN  T+++LIN  A 
Sbjct: 755 QQMKREGV-QPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWAR 813

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           A L E+A+  FEEM  +G +P+    + L+ +
Sbjct: 814 ASLPEKALSCFEEMKLSGLKPDRAVYHCLMTS 845



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 8/242 (3%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   +  F +K ++  AL  +D  +     P ++    +I          K+  I +++ 
Sbjct: 594 FMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMT 653

Query: 284 SQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              V+ N + + ++M+  A   D       +  ++  G+  D+ +Y  LLKACC +G   
Sbjct: 654 LAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRM- 712

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AKWWQMALKVKEDMLSAGVTPNTIT 400
             Q      K + A+ + + + F Y+ ++  +A     W+ A  + + M   GV P+  T
Sbjct: 713 --QSALAVTKEMSAQNIPR-NTFIYNILIDGWARRGDIWEAA-DLMQQMKREGVQPDIHT 768

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++S INAC+ AG +++A    EEM   G +PN +    L+     A   ++A   F    
Sbjct: 769 YTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMK 828

Query: 461 LS 462
           LS
Sbjct: 829 LS 830



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 132/313 (42%), Gaps = 24/313 (7%)

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNM 315
           I  T++D   + GD  K   ++E  +   +  ++  +  L+N+ A   K +  LEV K M
Sbjct: 453 IYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEM 512

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           +  G+  +M +Y++L+       +   A  I+ ++     K  +K DV  Y+ I+  F  
Sbjct: 513 EHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDL----IKDGIKPDVVLYNNIITAFCG 568

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
                 A+   ++M      P T T+  +I+  A  G +++A+ +F+ M  +GC P    
Sbjct: 569 MGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHT 628

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
            N L+   VE  + ++A ++    TL+            N    + + H    S+ +T  
Sbjct: 629 YNALILGLVEKRKMEKAEQILDEMTLAGVSP--------NEHTYTTIMH-GYASLGDT-- 677

Query: 496 FVPNSHYSSFDK--RFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISW 551
                 ++ F K      +    TY  L+KACC       AL    EM    +  N   +
Sbjct: 678 ---GKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIY 734

Query: 552 TILIDACGGSGNV 564
            ILID     G++
Sbjct: 735 NILIDGWARRGDI 747



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 149/363 (41%), Gaps = 70/363 (19%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327
           GD  ++R  +E +R++ +  + +V+ +L++  A   D++  L   + M++ G+   + +Y
Sbjct: 325 GDMHRARETFEKMRARGIEPSSHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTY 384

Query: 328 NILLKACCLAGNTVLA----QE-----------IYGE-----------------VKHLEA 355
           +IL+      GN   A    QE           IYG                  V+ +E 
Sbjct: 385 SILVSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEE 444

Query: 356 KGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
           +G+   +D+  Y T++  +         L V E     G+ P+ IT+  LIN  A  G V
Sbjct: 445 EGIDAPIDI--YHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKV 502

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS--KTQVALGEDY 472
            +A+ + +EM  AG + N +  ++L+   ++   +  AF +F        K  V L  + 
Sbjct: 503 SKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNI 562

Query: 473 D------GNTDR----ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK---------- 512
                  G  DR    +  M+ +  +  T T  F+P  H   F ++   K          
Sbjct: 563 ITAFCGMGKMDRAVCTVKEMQKQRHKPTTRT--FMPIIH--GFARKGEMKKALDVFDMMR 618

Query: 513 -----PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
                PT  TYN L+          KA  +++EM   G+SPN  ++T ++      G+  
Sbjct: 619 MSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTG 678

Query: 566 GAL 568
            A 
Sbjct: 679 KAF 681



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 139/346 (40%), Gaps = 33/346 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++     +I++    G   K+  + +++    +  N+  ++ L+N  +   D      
Sbjct: 483 NPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFA 542

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +++++ K G+  D+  YN ++ A C  G    A     E++    K   +    T+  I+
Sbjct: 543 IFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTR----TFMPII 598

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             FA     + AL V + M  +G  P   T+++LI        +E+A  + +EM  AG  
Sbjct: 599 HGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVS 658

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG------NTDRI-SNME 483
           PN      ++          +AF  F        Q+ +   Y+        + R+ S + 
Sbjct: 659 PNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDV-YTYEALLKACCKSGRMQSALA 717

Query: 484 HKDKQSITNTP--NFVPN----------SHYSSFD-----KRFSFKPTTTTYNILMKAC- 525
              + S  N P   F+ N            + + D     KR   +P   TY   + AC 
Sbjct: 718 VTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACS 777

Query: 526 -CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
              D  R    + EM++VG+ PN  ++T LI+    +   E AL C
Sbjct: 778 KAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSC 823



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 101/235 (42%), Gaps = 6/235 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +L+ N +  F     +  A+      +K    P       II      G+  K+  +++ 
Sbjct: 557 VLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDM 616

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R       ++ +N+L+   V    ++   ++   M   GV  +  +Y  ++      G+
Sbjct: 617 MRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGD 676

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A   +     L  +G L+LDV+TY  ++K    +   Q AL V ++M +  +  NT 
Sbjct: 677 TGKA---FTYFTKLRDEG-LQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTF 732

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            ++ LI+  A  G + +A  L ++M + G +P+       + AC +A    RA +
Sbjct: 733 IYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATK 787



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           +PR   ++   +  + ++ D+  A       K+    P+++   + I+ C   GD  ++ 
Sbjct: 727 IPRNTFIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRAT 786

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
              E+++S  V  N+  + +L+N    A   +  L  ++ M+  G+  D A Y+ L+
Sbjct: 787 KTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLM 843



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           Y +++      G+   A+E +   + + A+G+ +     Y+ ++  +A  +  + AL   
Sbjct: 314 YGLMVNYYTRRGDMHRARETF---EKMRARGI-EPSSHVYTNLIHAYAVGRDMEEALSCV 369

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
             M   G+  + +T+S L++  A  G  E A H F+E  +     N+     ++ A  + 
Sbjct: 370 RKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQR 429

Query: 447 CQFDRAFRLFR 457
           C  D+A  L R
Sbjct: 430 CNMDKAEALVR 440


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 148/349 (42%), Gaps = 43/349 (12%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           A RA+ A+ +   SP+++    +I   G+C  G   K+  + +D+R+  +  ++  +N++
Sbjct: 169 AERAFKAALRRRVSPDLFTFNIVIS--GLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTI 226

Query: 298 MNV-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           ++       A  +     + K M + G+  +  ++N+L+   C   NT  A  ++ E+K 
Sbjct: 227 IDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQ 286

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
              +G+    V TYS +V         +  +K+ ++M   G+ PN  T +S++N     G
Sbjct: 287 ---QGIAA-SVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKG 342

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
           ++  A    + M Q   +PN     IL+               +R     K  +A+ E  
Sbjct: 343 MMTDAEGWIDSMEQKNVKPNVVTYTILVDG-------------YRRLDKMKDALAVKEAM 389

Query: 473 DGNTDRISNMEHKDKQSITN--TPNFVPNSHYSSFD------KRFSFKPTTTTYNILMKA 524
            G   R           I N     F  N  + S        +    +    TYN+L+ A
Sbjct: 390 SGKGVR-------PNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGA 442

Query: 525 CCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            C      KA  L++EM  VGL P H+++  +I+     GN++ A + R
Sbjct: 443 LCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIR 491



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 182/433 (42%), Gaps = 40/433 (9%)

Query: 26  RNKPNKHPVTKLFPLASSSSLSSIPTVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDG 85
           R++P+   V +L      S+L +   V  ++ A  + +RR +S     +  + S L K G
Sbjct: 145 RHRPSAFSVNRLL-----SALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTG 199

Query: 86  RLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145
           +L +   + + +           S+++   +  G  K  R GR+  V  +LK++ E G++
Sbjct: 200 QLRKAGDVAKDIRAW----GLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGIS 255

Query: 146 PLELFDGSGFKLLKNE-CQRLLDSGEVEMF-----VGLMEVLEEFRLPVKELDEEFRI-- 197
           P E+     F +L N  C+    +  V +F      G+   +  +   V  L  E ++  
Sbjct: 256 PNEVT----FNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEE 311

Query: 198 -VQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM 256
            V+L     D+ L    A +         + +  F KK  +  A    D+ ++    PN+
Sbjct: 312 GVKLVDEMKDLGLVPNLATL--------NSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNV 363

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKN 314
                ++D          + A+ E +  + V  N  ++N L+       D +    +   
Sbjct: 364 VTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDE 423

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV--FTYSTIVKV 372
           M+  GV AD+ +YN+L+ A C+ G      E+   VK L+   ++ L+    TY+TI+  
Sbjct: 424 MRMKGVRADIVTYNVLIGALCVKG------EVRKAVKLLDEMLMVGLEPVHLTYNTIING 477

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           + +    + A +++  M       N +T++  I      G +E+   L  EML+ G  PN
Sbjct: 478 YCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPN 537

Query: 433 SQCCNILLQACVE 445
               + + +  +E
Sbjct: 538 GVTYDTIKEGMME 550



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 127/340 (37%), Gaps = 94/340 (27%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           SPN      +++  G C D   + A+  +E+++ Q +  ++  +++L+    +   ++  
Sbjct: 255 SPNEVTFNVLVN--GYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEG 312

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +++   M+ LG++ ++A+ N +L   C  G    A+   G +  +E K V K +V TY+ 
Sbjct: 313 VKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAE---GWIDSMEQKNV-KPNVVTYTI 368

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNT------------------------------ 398
           +V  +      + AL VKE M   GV PN                               
Sbjct: 369 LVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKG 428

Query: 399 -----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
                +T++ LI A    G V +A+ L +EML  G EP     N ++    E      A+
Sbjct: 429 VRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAY 488

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
            +                        + ME   K++                        
Sbjct: 489 EIR-----------------------TRMEKGKKRA------------------------ 501

Query: 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISW 551
              TYN+ +K  C          L+NEM   GL PN +++
Sbjct: 502 NVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTY 541


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 108/269 (40%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K   + YK + + G  A +  +NI++   C  G    AQ ++  +     K  L+  V 
Sbjct: 117 FKLVWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAI----TKWGLRPSVV 172

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +++T++  +          ++K  M ++GV P+  T+S LIN       V++A  LF EM
Sbjct: 173 SFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEM 232

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +    D A  ++                            
Sbjct: 233 LDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIY---------------------------- 264

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                   F P   TYN L+   C   D  +V+AL++EM   
Sbjct: 265 --KQMLSQ-----------------GFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMN 305

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ I++T LID C   G++E A + R
Sbjct: 306 GLKPDKITYTTLIDGCCKEGDLETAFEFR 334



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 10/190 (5%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G+  +++++++ +    +  ++  FN+LMN  +   DL     +   M   GV  D+ +Y
Sbjct: 150 GEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTY 209

Query: 328 NILLKACCLAGNTVLAQEIYGEV--KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           ++L+   C       A E++ E+  + L   GV      T++T++ V         A+++
Sbjct: 210 SVLINGLCKESKVDEANELFNEMLDRGLVPNGV------TFTTLIDVHCKNGMVDSAMEI 263

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + MLS G +P+ IT+++LI      G ++Q   L +EM   G +P+      L+  C +
Sbjct: 264 YKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCK 323

Query: 446 ACQFDRAFRL 455
               + AF  
Sbjct: 324 EGDLETAFEF 333



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 151/360 (41%), Gaps = 33/360 (9%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DI +F   +  + +   +  A++ +  +KKH        CR +++       +     
Sbjct: 63  RSDIYVFSGLMTAYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWD 122

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            Y+++       ++Y FN +M+      +++    V+  + K G+   + S+N L+    
Sbjct: 123 FYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++  +ML  G+ 
Sbjct: 183 RLGD---LDEGFRLKSAMHASGV-QPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLV 238

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++LI+     G+V+ AM ++++ML  G  P+    N L+    +     +   L
Sbjct: 239 PNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRAL 298

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKD---KQSITNTPNFVPNSHYSSFDKRF--- 509
               +++  +           D+I+     D   K+    T           F KR    
Sbjct: 299 IDEMSMNGLK----------PDKITYTTLIDGCCKEGDLETA--------FEFRKRMIKE 340

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           S +     Y  L+   C +     A  +  EM +VGL P++ ++T++I+     G+V  A
Sbjct: 341 SIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTA 400



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 6/180 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN     T+IDV    G    +  IY+ + SQ  + ++  +N+L+       DLK    +
Sbjct: 239 PNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRAL 298

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M   G+  D  +Y  L+  CC  G+     E   E +    K  ++LD   Y+ +V 
Sbjct: 299 IDEMSMNGLKPDKITYTTLIDGCCKEGDL----ETAFEFRKRMIKESIRLDNVAYTALVS 354

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                     A K+  +MLS G+ P+  T++ +IN     G V  A  L +EM + G  P
Sbjct: 355 GLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVP 414


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/399 (21%), Positives = 167/399 (41%), Gaps = 61/399 (15%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           +R  G++     AL+  D       S ++  C TI+      G Y ++ A++E ++   +
Sbjct: 204 IRILGRESKYSIALKLLDKIPIDKYSLDVRACTTILHAYSRNGKYKQAIAMFERMKDCGL 263

Query: 288 TLNIYVFNSLMNVNA---HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           + ++  +N +++V           L++   M+  G+  D  + + ++ AC   G    A+
Sbjct: 264 SPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINEAK 323

Query: 345 EIYGEVK-----------------------HLEAKGVLK--------LDVFTYSTIVKVF 373
           E + E+K                       + EA  +LK        LD  TY+ +V  +
Sbjct: 324 EFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAY 383

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
             A +++    V + M   GV PN +T++++INA   AG   +A+ LF +M ++GC PN 
Sbjct: 384 VRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNV 443

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLS---------KTQVALGEDYDGNTDRISNMEH 484
              N +L    +  + +   ++     ++          T +A+  D  G    ++++  
Sbjct: 444 CTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGD-KGKHKFVNHVFR 502

Query: 485 KDKQSITNTPNFVPNSHYSSFDK---------------RFSFKPTTTTYNILMKACCT-- 527
           + K           N+  S++ +               +  F P  TTYN L+ A     
Sbjct: 503 EMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRG 562

Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
           D+   ++++ +MR  G  PN  S+++++      GNV G
Sbjct: 563 DWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRG 601



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 96/207 (46%), Gaps = 18/207 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313
           P+  + RT+I     C         +E+L       ++ +FNS++++ A +      +Y+
Sbjct: 616 PSWVLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKN-----NMYE 670

Query: 314 NMQKL-------GVMADMASYNILLKACCLAGNTVLAQEIY-GEVKHLEAKGVLKLDVFT 365
             QK+       G+  D+ +YN L+      G    A+EI  G +K  E+      D+ +
Sbjct: 671 RAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESP-----DLVS 725

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+TI+K F      Q A++V  +M + G+ P   T+++ ++  A  G+  +   +   M+
Sbjct: 726 YNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMI 785

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRA 452
           Q  C+PN     I++    +A ++  A
Sbjct: 786 QKNCKPNELTYKIIVDGYCKARKYQDA 812



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 6/181 (3%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301
           RA++   K+   P+M I  +++ +      Y +++ + + +R   +  ++  +NSLMN+ 
Sbjct: 639 RAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMY 698

Query: 302 AH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           A   +     E+ K + K G   D+ SYN ++K  C  G   L QE    +  +  +G+ 
Sbjct: 699 ARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQG---LMQEAIRVMSEMTTRGIC 755

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
              +FTY+T V  +A    +    +V   M+     PN +T+  +++    A   + AM 
Sbjct: 756 PC-IFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKARKYQDAMD 814

Query: 420 L 420
            
Sbjct: 815 F 815



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 64/345 (18%), Positives = 135/345 (39%), Gaps = 56/345 (16%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           ++P A + +   +  +G+    V AL+ ++  KK    PN+    +I+ + G      + 
Sbjct: 404 VMPNA-VTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEM 462

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
             I  D+R      N   +N+L+ +  +    KF   V++ M+  G      ++N L+ A
Sbjct: 463 IKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISA 522

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
               G+ + A ++Y E+     K        TY+ ++   A    W+ A  V  DM + G
Sbjct: 523 YGRCGSELDAAKMYDEM----MKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKG 578

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             PN  ++S +++  A  G V     + +++                             
Sbjct: 579 FKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDG-------------------------- 612

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
           ++F SW L +T +      +     +  ME   ++ + N                  +KP
Sbjct: 613 QIFPSWVLLRTLILA----NFKCRAVRGMERAFEELMKN-----------------GYKP 651

Query: 514 TTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILID 556
               +N ++     +  Y R + +++ +R  GL P+ +++  L++
Sbjct: 652 DMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMN 696



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 99/233 (42%), Gaps = 33/233 (14%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKL 318
           T+I   G CG  + +  +Y+++     T     +N+L+N  A   D K    V  +M+  
Sbjct: 518 TLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNK 577

Query: 319 GVMADMASYNILLKACCLAGNTV----LAQEIYG---------------------EVKHL 353
           G   +  S++++L      GN      + ++IY                       V+ +
Sbjct: 578 GFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILANFKCRAVRGM 637

Query: 354 E------AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
           E       K   K D+  +++++ +FA    ++ A K+ + +  +G+ P+ +T++SL+N 
Sbjct: 638 ERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNM 697

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
            A  G   +A  + + ++++G  P+    N +++          A R+    T
Sbjct: 698 YARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMT 750


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 137/310 (44%), Gaps = 28/310 (9%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G+C  GD    R + +++ ++ V  N+  +N+ +       DL    E+   M+K GV  
Sbjct: 234 GLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVAC 293

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           ++ +Y +L+      G    AQ ++ E++    KG+ + DV+ Y++I+     +   + A
Sbjct: 294 NVVTYTLLIHGFSNIGKIEEAQRLFEEMRE---KGI-EADVYVYTSIISCNCRSGNVKRA 349

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           L + ++M   G+ P+  T+ +LI+    AG +E A  L  EM   G + N    N L+  
Sbjct: 350 LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDG 409

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNMEHKDKQSITNTPNFVPN 499
             E+   D A RL     +   +  L  D   Y+     +  +  KD+            
Sbjct: 410 YCESGMVDEALRL----QVVMEKKGLESDVFAYNSIASGLCKLNRKDE---------AKG 456

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
             +S  ++  S  P T ++  L+   C +  +   K +  EM   G  PN I++ +LID 
Sbjct: 457 LLFSMVERGVS--PNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDG 514

Query: 558 CGGSGNVEGA 567
               GN++ A
Sbjct: 515 YSKRGNMKEA 524



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 153/362 (42%), Gaps = 33/362 (9%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           +A+++  N F+  + K+ DL          +K   + N+     +I      G   +++ 
Sbjct: 257 KANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQR 316

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E++R + +  ++YV+ S+++ N  + ++K  L ++  M   G++    +Y  L+   C
Sbjct: 317 LFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVC 376

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            AG    AQ +   V  ++ KG+  L+   ++T++  + ++     AL+++  M   G+ 
Sbjct: 377 KAGQMEAAQML---VNEMQGKGI-DLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLE 432

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            +   ++S+ +        ++A  L   M++ G  PN+     L+    +   F  A R+
Sbjct: 433 SDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRV 492

Query: 456 FRSWTLSKTQVALGEDY----DGNTDRISNME--HKDKQSITNTPNFVPNSHYSSFDKRF 509
           FR     K  V     Y    DG + R  NM+  HK K  + N                 
Sbjct: 493 FREME-EKGNVPNIITYNVLIDGYSKR-GNMKEAHKLKDELENR---------------- 534

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              P   T   L+   C D     A  L +EM   GL PN +++T +I      G  E A
Sbjct: 535 GLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEA 594

Query: 568 LQ 569
            +
Sbjct: 595 FK 596



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 82/150 (54%), Gaps = 6/150 (4%)

Query: 285 QNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + V+ N   F +L+++   +  F     V++ M++ G + ++ +YN+L+      GN   
Sbjct: 464 RGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKE 523

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A ++  E   LE +G++  DV+T ++++          MALK+ ++M   G+ PN +T++
Sbjct: 524 AHKLKDE---LENRGLIP-DVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYT 579

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           ++I+  +  G  E+A  L++EM + G  P+
Sbjct: 580 AMISGLSKDGRSEEAFKLYDEMKETGLTPD 609



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 53/263 (20%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L  ++ M  L V   + S  I+L   C  G+  + +++  EV    AKGV K +V TY+ 
Sbjct: 210 LRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVA---AKGV-KANVVTYNA 265

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            ++ +          ++   M   GV  N +T++ LI+  +N G +E+A  LFEEM + G
Sbjct: 266 FIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKG 325

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            E +      ++     +    RA  LF                D  TD+          
Sbjct: 326 IEADVYVYTSIISCNCRSGNVKRALVLF----------------DEMTDK---------- 359

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
                   +P++H               TY  L+   C        + L+NEM+  G+  
Sbjct: 360 ------GLIPSAH---------------TYGALIHGVCKAGQMEAAQMLVNEMQGKGIDL 398

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
           N + +  LID    SG V+ AL+
Sbjct: 399 NPVIFNTLIDGYCESGMVDEALR 421



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 101/208 (48%), Gaps = 14/208 (6%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYED--LRSQNVTLNIYVFNS----LMNVNAHDLKFT 308
           N  I  T+ID  G C   M   A+     +  + +  +++ +NS    L  +N  D    
Sbjct: 399 NPVIFNTLID--GYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKG 456

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L    +M + GV  +  S+  L+   C  GN V A+ ++ E   +E KG +  ++ TY+ 
Sbjct: 457 LLF--SMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFRE---MEEKGNVP-NIITYNV 510

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  ++     + A K+K+++ + G+ P+  T +SLI+     G V+ A+ LF+EM Q G
Sbjct: 511 LIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRG 570

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
             PN      ++    +  + + AF+L+
Sbjct: 571 LVPNVVTYTAMISGLSKDGRSEEAFKLY 598



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 83/167 (49%), Gaps = 18/167 (10%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--------VNAHD 304
           SPN     T+ID+    G++++++ ++ ++  +    NI  +N L++          AH 
Sbjct: 467 SPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHK 526

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           LK  LE        G++ D+ +   L+   C+ G   +A +++ E+     +G++  +V 
Sbjct: 527 LKDELE------NRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQ---RGLVP-NVV 576

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
           TY+ ++   +     + A K+ ++M   G+TP+   +SSL+ +  +A
Sbjct: 577 TYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSA 623


>gi|212275340|ref|NP_001130930.1| uncharacterized protein LOC100192035 [Zea mays]
 gi|195614146|gb|ACG28903.1| hypothetical protein [Zea mays]
 gi|219885707|gb|ACL53228.1| unknown [Zea mays]
 gi|413935208|gb|AFW69759.1| hypothetical protein ZEAMMB73_548432 [Zea mays]
          Length = 748

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 125/266 (46%), Gaps = 17/266 (6%)

Query: 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250
           L+   R++   ++ P V+  I  A    RAD L   F R F  +R   S   A  A    
Sbjct: 88  LENSIRLLSPTLDAPLVHGVISGAASAGRAD-LALQFFR-FAYRRGGFSPEGATFA---- 141

Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310
           L  P +   R +     +  D M S ++  D  +    ++ Y   ++        +  ++
Sbjct: 142 LLVPALASRRMLNHARCLVLDTMPSFSVAPDEPTLAALISAYGRAAIP-------QEAVK 194

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +++ M  +GV     SYN +LKA    G   +A+ IY     + A GV   DV TY+T++
Sbjct: 195 LFRMMPNIGVPRTALSYNAVLKAILCRGREAMARRIY---NAMIADGVAP-DVSTYNTLI 250

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F   K  + A++V  DM   GVTP+  T+++L+NA   AG +E A  +F+EM   G E
Sbjct: 251 WGFGLCKKMETAVRVFGDMKGHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMAGEGTE 310

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
            NS   N++++  VE  + + A  LF
Sbjct: 311 RNSVSYNVMIKGYVEGNRVEEAVALF 336



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 8/185 (4%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A R Y+A      +P++    T+I   G+C     +  ++ D++   VT ++  +N+L+N
Sbjct: 227 ARRIYNAMIADGVAPDVSTYNTLIWGFGLCKKMETAVRVFGDMKGHGVTPDVTTYNTLLN 286

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
             V A DL+   +V+  M   G   +  SYN+++K   + GN V  +E       +  KG
Sbjct: 287 AWVRAGDLESARKVFDEMAGEGTERNSVSYNVMIKG-YVEGNRV--EEAVALFAEMAEKG 343

Query: 358 VLKLDVFTYSTIVKVFADAKWW-QMALKVKEDMLSAGVTP-NTITWSSLINACANAGLVE 415
            L+L   T++ ++    D +     A K  +DM    +TP +   +  L+     AG ++
Sbjct: 344 -LRLSEKTFAALMPGLCDDQGRVAEARKAVDDMAERRLTPKDKSVFLRLVTTLCKAGDLD 402

Query: 416 QAMHL 420
            A+ +
Sbjct: 403 GALEV 407



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 96/204 (47%), Gaps = 15/204 (7%)

Query: 254 PNMYICRTIIDVCGIC------GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDL 305
           PN+ + RT +    +       G    +R IY  + +  V  ++  +N+L+        +
Sbjct: 200 PNIGVPRTALSYNAVLKAILCRGREAMARRIYNAMIADGVAPDVSTYNTLIWGFGLCKKM 259

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           +  + V+ +M+  GV  D+ +YN LL A   AG+   A++++ E   +  +G  +  V +
Sbjct: 260 ETAVRVFGDMKGHGVTPDVTTYNTLLNAWVRAGDLESARKVFDE---MAGEGTERNSV-S 315

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEM 424
           Y+ ++K + +    + A+ +  +M   G+  +  T+++L+   C + G V +A    ++M
Sbjct: 316 YNVMIKGYVEGNRVEEAVALFAEMAEKGLRLSEKTFAALMPGLCDDQGRVAEARKAVDDM 375

Query: 425 LQAGCEPNSQCCNILLQACVEACQ 448
            +    P  +  ++ L+     C+
Sbjct: 376 AERRLTPKDK--SVFLRLVTTLCK 397


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 150/333 (45%), Gaps = 24/333 (7%)

Query: 240 ALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNS 296
           A+  +D  +K ++  P+     T+I   G+C +   ++A  I+E+ R     L+++ ++S
Sbjct: 387 AIELWDLLEKDVACIPDTVTFGTLIH--GLCQNGFANKAFTIFEEARVSGKQLDVFSYSS 444

Query: 297 LMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           ++N   N   L   ++VY+ M K G   +   YN L+   C    T  A  IY ++    
Sbjct: 445 MINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKM---- 500

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
           A       V TY+T++     A+ +Q A  V  +M+  G TP+  T+ SLI    +   +
Sbjct: 501 ADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKI 560

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG 474
           + A+ +++++L  G + +    NIL+     A + D A  +F      K        Y+ 
Sbjct: 561 DDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNT 620

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRV 532
             D +    + DK +          + ++S  +    +P   +YN  +K  C+    +  
Sbjct: 621 LMDGLYETGYIDKAA----------TLWTSITED-GLEPDIISYNTRIKGLCSCDRIHEG 669

Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
             L++E+ + G+ P  I+W IL+ A    G ++
Sbjct: 670 IQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 151/378 (39%), Gaps = 58/378 (15%)

Query: 233 KKRDLVSALRAYDA-SKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTL 289
           K  +    +R +D   K   + PN+     ++D  G+C  G + +   ++E + + N+  
Sbjct: 240 KAGEFEKVMRVWDKLVKDPGARPNLATYNVMLD--GLCKFGRFKEVGEVWERMVANNLQP 297

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           ++  +  L++    + D+     VY  + K G++ D A YN L+K  C AG    A + +
Sbjct: 298 DVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFW 357

Query: 348 GE---------------VKHLEAKGVLK----------------LDVFTYSTIVKVFADA 376
                            +K L   G++                  D  T+ T++      
Sbjct: 358 DSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQN 417

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
            +   A  + E+   +G   +  ++SS+IN   N G +  A+ ++E+M + GC+PNS   
Sbjct: 418 GFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIY 477

Query: 437 NILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
           N L+    +  +   A R++        S T +     Y+   D +   E K +++ +  
Sbjct: 478 NALISGFCQVYRTSDAVRIYSKMADNGCSPTVIT----YNTLIDGLCKAE-KYQEASSVA 532

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISW 551
              V N           F P  TTY  L++   +D     AL    ++   GL  + +  
Sbjct: 533 REMVEN----------GFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMH 582

Query: 552 TILIDACGGSGNVEGALQ 569
            ILI     +G V+ AL 
Sbjct: 583 NILIHGLCSAGKVDEALH 600



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 48/252 (19%)

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
           LG    + S+N LL A   A     A   +  + H      +  ++ TY+ +++      
Sbjct: 113 LGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARG 172

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
               A+ + + +    V P+ IT+S+L+   A    ++ A+ L +EM ++  +P+  C N
Sbjct: 173 DLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYN 232

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
            LL  C +A +F++  R++                    D++     KD  +        
Sbjct: 233 ALLGGCFKAGEFEKVMRVW--------------------DKLV----KDPGA-------- 260

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILI 555
                         +P   TYN+++   C    +  V  +   M    L P+ I++ ILI
Sbjct: 261 --------------RPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILI 306

Query: 556 DACGGSGNVEGA 567
                SG+V+GA
Sbjct: 307 HGLCRSGDVDGA 318


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 179/396 (45%), Gaps = 46/396 (11%)

Query: 189 KELDEEFRIVQLCVN---KPDV---NLAIRYACIVPRAD------------------ILF 224
           K  DE +RI+    N   KPDV    + I+  C   R                    + +
Sbjct: 279 KRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTY 338

Query: 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284
              + +FG   D  S +  ++A K    + N+     +ID     G   ++  ++++++ 
Sbjct: 339 ITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQ 398

Query: 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + +    Y +NSL++  + A      LE++K+M   G   +  ++ + +     +G ++ 
Sbjct: 399 KGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIK 458

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A + Y   + +++KG++  DV   + ++   A +    MA +V  ++ + GV+P+TIT++
Sbjct: 459 AIQRY---ELMKSKGIVP-DVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYT 514

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
            +I  C+ A   ++A+ +F +M++  C P+    N L+    +A + D A+R+F  + L 
Sbjct: 515 MMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIF--YQLK 572

Query: 463 KTQVALGEDYDGNTDR-ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
           +  +   E  DG  +  ++ +  + K  +    + +   ++S      ++ P   TYN +
Sbjct: 573 EMNL---EPTDGTYNTLLAGLGREGK--VKEVMHLLEEMYHS------NYPPNLITYNTI 621

Query: 522 MKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
           +   C +     AL  +  M T G  P+  S+  +I
Sbjct: 622 LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVI 657



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 135/342 (39%), Gaps = 53/342 (15%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           FGK+RD+ + L      + H   PN+Y     I V G                       
Sbjct: 240 FGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLG----------------------- 276

Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
                      A        +   M+  G   D+ ++ +L++  C AG    A++++ ++
Sbjct: 277 ----------QAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKM 326

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K    K   K D  TY T++  F D    Q  +++   M + G   N + ++++I+A   
Sbjct: 327 K----KSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQ 382

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G V +A+ +F+EM Q G  P     N L+   ++A +F  A  LF+   +       G 
Sbjct: 383 VGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIH------GP 436

Query: 471 DYDGNTDRI-SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD- 528
             +G T  +  N   K  +SI     +          K     P     N ++       
Sbjct: 437 KPNGYTHVLFINYYGKSGESIKAIQRY-------ELMKSKGIVPDVVAGNAVLFGLAKSG 489

Query: 529 -YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
                K + +E++ +G+SP+ I++T++I  C  +   + A++
Sbjct: 490 RLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVK 531



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           + ++C  I  +C      +++  + +  +S  V+L   ++NSL+   V+ + +     ++
Sbjct: 755 DFFLCPLIKHLCKQ-KKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLF 813

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M++LG   D  +YN+LL A    G ++  +E+    + +  KG     V TY+TI+  
Sbjct: 814 AEMKELGCGPDEFTYNLLLDA---MGKSMRIEEMLKVQEEMHRKGYESTYV-TYNTIISG 869

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
              ++  + A+ +  +++S G +P   T+  L++    AG +E A +LF EML+ GC+ N
Sbjct: 870 LVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKAN 929

Query: 433 SQCCNILLQACVEACQFDRAFRLFR 457
               NILL     A   ++   LF+
Sbjct: 930 CTIYNILLNGHRIAGNTEKVCHLFQ 954



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +LF N+   +GK  + + A++ Y+  K     P++     ++      G    ++ ++ +
Sbjct: 444 VLFINY---YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHE 500

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           L++  V+ +   +  ++   +   KF   ++++ +M +   + D+ + N L+     AG 
Sbjct: 501 LKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGR 560

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  I+ ++K +     L+    TY+T++         +  + + E+M  +   PN I
Sbjct: 561 GDEAWRIFYQLKEMN----LEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 616

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           T++++++     G V  A+ +   M   GC P+    N ++   V+  +++ AF +F
Sbjct: 617 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIF 673



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/344 (19%), Positives = 139/344 (40%), Gaps = 45/344 (13%)

Query: 236 DLVSALRAYD-----------ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284
           D++ ALR+ D           A++K   +     C  ++++    G       +++ ++ 
Sbjct: 94  DVIHALRSADGPAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEVFDVMQR 153

Query: 285 QNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           Q V  N+  F ++      +  L+        M++ G++ +  +YN L+     +G    
Sbjct: 154 QIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDRE 213

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A E+Y   + +   GV+   V TYS ++  F   +  +  L +  +M + GV PN  +++
Sbjct: 214 ALEVY---RVMMVDGVVP-SVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYT 269

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
             I     A   ++A  +  +M   GC+P+     +L+Q   +A +   A  +F  W + 
Sbjct: 270 ICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVF--WKMK 327

Query: 463 KTQVALGEDYDGNTDRISNM-------EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           K+        D   DR++ +       ++ D QS+    N +    Y+            
Sbjct: 328 KS--------DQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYND---------NV 370

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
             Y  ++ A C     +    + +EM+  G+ P   S+  LI  
Sbjct: 371 VAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISG 414



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 99/234 (42%), Gaps = 28/234 (11%)

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           L+K  C     + A E+   VK  ++ GV  L    Y++++    D     +A  +  +M
Sbjct: 761 LIKHLCKQKKALEAHEL---VKKFKSFGV-SLKTGLYNSLICGLVDENLIDIAEGLFAEM 816

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
              G  P+  T++ L++A   +  +E+ + + EEM + G E      N ++   V++ + 
Sbjct: 817 KELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRL 876

Query: 450 DRAFRLF---RSWTLSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
           ++A  L+    S   S T    G   DG     RI + E+   + +              
Sbjct: 877 EQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEML-------------- 922

Query: 505 FDKRFSFKPTTTTYNILMKA--CCTDYYRVKALMNEMRTVGLSPNHISWTILID 556
               +  K   T YNIL+       +  +V  L  +M   G++P+  S+TI+ID
Sbjct: 923 ---EYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIID 973



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 57/323 (17%), Positives = 138/323 (42%), Gaps = 22/323 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P++    ++ID     G   ++  I+  L+  N+      +N+L+     +  +K  + +
Sbjct: 543 PDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHL 602

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M       ++ +YN +L   C  G    A ++   +  +  KG +  D+ +Y+T++ 
Sbjct: 603 LEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDM---LYSMTTKGCIP-DLSSYNTVIY 658

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE-MLQAGCE 430
                + +  A  +   M    + P+  T  +++ +    GL+++A+H+ ++  LQ G +
Sbjct: 659 GLVKEERYNEAFSIFCQMKKV-LIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSK 717

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
            +   C+ L++  ++    +++     +  ++ + + L + +         ++H  KQ  
Sbjct: 718 TDRSSCHSLMEGILKKAGIEKSIEF--AEIIASSGITLDDFF-----LCPLIKHLCKQKK 770

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNH 548
               + +         K F     T  YN L+     +      + L  EM+ +G  P+ 
Sbjct: 771 ALEAHELVKKF-----KSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDE 825

Query: 549 ISWTILIDACGGSGNVEGALQCR 571
            ++ +L+DA G S  +E  L+ +
Sbjct: 826 FTYNLLLDAMGKSMRIEEMLKVQ 848


>gi|225427240|ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 7/206 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL--MNVNAHDLKFTLEV 311
           P+      I+DV    G   +  ++YE  R+     +   F  L  M   A D      V
Sbjct: 267 PDEVTYSAILDVYAKLGKVEEVLSLYERGRASGWKPDPIAFAVLGKMFGEAGDYDGIRYV 326

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M+ LGV  ++  YN LL+A   AG   LA+ ++ E   +   GV+  D  T + +VK
Sbjct: 327 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEE---MVGSGVIP-DAKTLTALVK 382

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCE 430
           ++  A+W + AL++ E M S G   + I +++L++ CA+ GL E+A  LFE+M ++  C 
Sbjct: 383 IYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFEDMKKSEHCR 442

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
           P+S     +L         DRA +LF
Sbjct: 443 PDSWSYTAMLNIYGSGGNVDRAMQLF 468



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN+ +K+        L +E+  E   + + GV +LD  TYSTI+        +  A+K  
Sbjct: 202 YNVTMKSLRFGRQFQLIEELANE---MISTGV-ELDNITYSTIITCAKRCNLFDKAVKWF 257

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           E M   G+ P+ +T+S++++  A  G VE+ + L+E    +G +P+     +L +   EA
Sbjct: 258 ERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYERGRASGWKPDPIAFAVLGKMFGEA 317

Query: 447 CQFD 450
             +D
Sbjct: 318 GDYD 321



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 100/231 (43%), Gaps = 19/231 (8%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKL 318
           TII     C  + K+   +E +    +  +   ++++++V A    ++  L +Y+  +  
Sbjct: 239 TIITCAKRCNLFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYERGRAS 298

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  ++ +L K    AG+    + +  E+K L   GV + ++  Y+T+++    A  
Sbjct: 299 GWKPDPIAFAVLGKMFGEAGDYDGIRYVLQEMKSL---GV-QPNLVVYNTLLEAMGKAGK 354

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
             +A  + E+M+ +GV P+  T ++L+     A     A+ L+E M   G   +    N 
Sbjct: 355 PGLARSLFEEMVGSGVIPDAKTLTALVKIYGKARWARDALELWERMRSNGWPMDFILYNT 414

Query: 439 LLQACVEACQFDRAFRLFR-----------SWTLSKTQVALGEDYDGNTDR 478
           LL  C +    + A +LF            SW+ +      G    GN DR
Sbjct: 415 LLSMCADLGLEEEAEKLFEDMKKSEHCRPDSWSYTAMLNIYGS--GGNVDR 463



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 36/212 (16%), Positives = 85/212 (40%), Gaps = 49/212 (23%)

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           ++ + +  ++   Y+  +K     + +Q+  ++  +M+S GV  + IT+S++I       
Sbjct: 189 IKTQNLFPMETIFYNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTIITCAKRCN 248

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
           L ++A+  FE M + G  P+    + +L    +                           
Sbjct: 249 LFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKL-------------------------- 282

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYY 530
            G  + + ++  + + S                     +KP    + +L K      DY 
Sbjct: 283 -GKVEEVLSLYERGRAS--------------------GWKPDPIAFAVLGKMFGEAGDYD 321

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
            ++ ++ EM+++G+ PN + +  L++A G +G
Sbjct: 322 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 353


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 126/290 (43%), Gaps = 39/290 (13%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +VY  M   G+  ++ ++N ++K  C  G    A+ I G + H  A      D FTY+++
Sbjct: 188 DVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACP----DTFTYTSL 243

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +          +A ++ + M+  G  PN++T+S+LIN   + G +E+AM + EEM+  G 
Sbjct: 244 IIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGI 303

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISN 481
           EP      I + +  +A +   A +L              + T +  G   DG  +    
Sbjct: 304 EPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIG 363

Query: 482 MEHKDKQSITNTPNFVPNS-HYSSF------DKRFSFK-------------PTTTTYNIL 521
           + HK           VP +  YS+       + RF                P T TYN++
Sbjct: 364 VYHK-----MLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVI 418

Query: 522 MKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +K  C+  Y  +  A+ ++M   G SPN I++ I+I      G +  A++
Sbjct: 419 IKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMR 468



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/339 (20%), Positives = 138/339 (40%), Gaps = 34/339 (10%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A++     KK    PN+     +I      G +  +  +Y  + +  +      +++L+N
Sbjct: 326 AVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALIN 385

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
               + +F   L +++ M     + +  +YN+++K  C  G    A  I+ ++     K 
Sbjct: 386 QLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQM----LKA 441

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
               +V TY+ I+ ++    +   A+++ E M   G+  +T T+++LI+  +  G +E A
Sbjct: 442 GPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHA 501

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT-QVALGEDYD--- 473
             LF EM++ G  PN    N ++   +   + D A  LF  W + ++  V     Y+   
Sbjct: 502 FSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALF--WKMVESGNVPSSGTYNMMI 559

Query: 474 ---GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
                T+RIS  E+   + +                      P   TY   +   C +  
Sbjct: 560 SGFSKTNRISEAENFCGKMVKQ-----------------GLLPNVITYTSFIDGLCKNGR 602

Query: 531 RVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              A  + +EM+     PN  +++ LID     G  E A
Sbjct: 603 TSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDA 641



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 80/383 (20%), Positives = 149/383 (38%), Gaps = 75/383 (19%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           +VP A + +   + +   +    +AL  ++    H S PN      II   G C  G   
Sbjct: 373 LVPTA-VTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIK--GFCSIGYIQ 429

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           K+ AI++ +     + N+  +N ++++      F      N  +L  M            
Sbjct: 430 KATAIFDQMLKAGPSPNVITYNIIIHI-----YFKQGYMNNAMRLLEM------------ 472

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
             + GN                   LKLD +TY+ ++  F+     + A  +  +M+  G
Sbjct: 473 --MKGNG------------------LKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHG 512

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA- 452
           ++PN +T++++IN       V+ A+ LF +M+++G  P+S   N+++    +  +   A 
Sbjct: 513 ISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAE 572

Query: 453 ---FRLFRSWTL----SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN-SHYSS 504
               ++ +   L    + T    G   +G T     + H+ K+      ++ PN   YSS
Sbjct: 573 NFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKR-----DYFPNLCTYSS 627

Query: 505 FDKRF---------------SFKPTTTTYNILMKACCTDY--YRVKALMNEMRTVGLSPN 547
                                 +P   TY  L++  C     Y    L+  M+  GL P+
Sbjct: 628 LIDGLCQEGQAEDAERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPS 687

Query: 548 -HISWTILIDACGGSGNVEGALQ 569
             I   +L+  C     VE AL+
Sbjct: 688 EEIYRALLVGQCKNL-EVESALK 709



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 72/354 (20%), Positives = 136/354 (38%), Gaps = 29/354 (8%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A   +D   K   SPN+     II +    G    +  + E ++   + L+ + + +L++
Sbjct: 431 ATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLIS 490

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                  L+    ++  M + G+  ++ +YN ++           A  ++   K +E+  
Sbjct: 491 GFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFW--KMVESGN 548

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
           V      TY+ ++  F+       A      M+  G+ PN IT++S I+     G    A
Sbjct: 549 VPSSG--TYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLA 606

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW---------TLSKTQVAL 468
             +F EM +    PN    + L+    +  Q + A RL             TL +     
Sbjct: 607 FKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPNVDTYTTLVRGLCGK 666

Query: 469 GEDYDGNTDRISNMEHKDKQS---------ITNTPNFVPNSHYSSFDKRFS--FKPTTTT 517
           G  Y+ +   + +M+ K  Q          +    N    S    FD   +  F+P  + 
Sbjct: 667 GRCYEAD-QLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSD 725

Query: 518 YNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           Y  L+ A C   +R KA  +   M     + + + WT+L+D     G  + +L+
Sbjct: 726 YKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLE 779


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 168/374 (44%), Gaps = 44/374 (11%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICR-----TIIDVCGICGDYMKSRAIYED 281
           FV+  G++     AL  ++  +KH    + +  R     +I+ V G       +  ++E 
Sbjct: 147 FVKALGRQGKWKKALEVFEWIRKH----DCFKLRGVATASILSVLGNHEQLPAALELFES 202

Query: 282 LRS-QNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAG 338
           L+  ++ +L++Y + SL+++ +   +F   + +++ MQ+ G   +  +YN++L      G
Sbjct: 203 LKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRG 262

Query: 339 NTV-LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           ++    Q ++ E+K LE    +  D +TY+T++         Q AL++ ++M  AG  PN
Sbjct: 263 DSWDRIQSLFQEMKDLE----ISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPN 318

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +T+++L++     G+ ++A  L  EM  AG  PN    N L+ A   A   D A  L +
Sbjct: 319 RVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKK 378

Query: 458 SWTLSK-------TQVALGEDYDGNTDRISNMEHKDKQSITN-TPNFVPNS----HYSSF 505
           S  LSK       T   L   ++        +E   +   TN TPN V  +     Y   
Sbjct: 379 SL-LSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRM 437

Query: 506 DKR------FSF------KPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISW 551
           +K       F F       P   T+N L+K+   C     V  +  EM+  G  P   ++
Sbjct: 438 EKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTF 497

Query: 552 TILIDACGGSGNVE 565
            ILI+  G  G V+
Sbjct: 498 NILIECYGRCGYVD 511



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 157/355 (44%), Gaps = 27/355 (7%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           +  +C  +  F +      AL  +   +K   +PN+     +ID+ G          +++
Sbjct: 389 EFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFK 448

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            ++ +N T ++  +NSL+    N   L     V++ M++ G M  + ++NIL++     G
Sbjct: 449 FMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCG 508

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               + +IY   K L   G L+  V T++ ++   A    WQ   KV ++M  AG+  + 
Sbjct: 509 YVDYSVDIY---KGLLRTG-LQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSD 564

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ--CCNILLQACVEACQFDRAFRLF 456
              + LI++ AN+G   Q     +E+ ++  +P S   C   +L  C   C  D      
Sbjct: 565 ACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYC--KCGMD------ 616

Query: 457 RSWTLSKTQVALGEDYD-GNTDRISNMEHKDKQSITNTPNFVPNS-HYSSFDKRFSFKPT 514
                ++ Q+AL + YD G++  I         S+     ++  +       ++   KP 
Sbjct: 617 -----NEAQLALNQLYDNGHSPDIKVF--NAMISMCAKRGWIERAVKLLEEIRKAQLKPD 669

Query: 515 TTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             TYN LM     +  YY+ + +M+EMR  G +PN I++  L+ +    G ++ A
Sbjct: 670 GVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDA 724



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 101/206 (49%), Gaps = 8/206 (3%)

Query: 241 LRAY-DASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           LR Y D  +K    P +  +C+T +     CG   +++     L     + +I VFN+++
Sbjct: 583 LRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMI 642

Query: 299 NVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           ++ A    ++  +++ + ++K  +  D  +YN L+      G    A+E+  E++    +
Sbjct: 643 SMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMR----R 698

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
                ++ TY+T++  +        A +V  DM++A V P+  T+++L+ + ++ GL ++
Sbjct: 699 AGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKE 758

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQA 442
           A+ + E M + GC+P       LL  
Sbjct: 759 ALSVIEYMTEHGCQPTQITFKALLDG 784



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 51/95 (53%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  ++ ++ + A   W + A+K+ E++  A + P+ +T++ L++     G+  +A  + 
Sbjct: 634 DIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVM 693

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            EM +AG  PN    N LL +  +  + D A R+F
Sbjct: 694 SEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVF 728


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 130/310 (41%), Gaps = 44/310 (14%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           + E +    ++ ++Y +++L+       +     +V   M++ G   +  +YN+L+   C
Sbjct: 231 VREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLC 290

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +G     +E +G  K +E  G++  D FTY  ++     ++    A  + ++M  A + 
Sbjct: 291 RSGAV---EEAFGFKKDMEDYGLVP-DGFTYGALINGLCKSRRSNEAKALLDEMSCAELK 346

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN + +++LI+     G  ++A  + +EM+ AG +PN    + L++   +  Q DRA  L
Sbjct: 347 PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLL 406

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK--- 512
            +                        M     +  T T N +   H+    K+ +F+   
Sbjct: 407 LK-----------------------QMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLS 443

Query: 513 --------PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSG 562
                   P   TY+I++   C      KA  L+ EM T GL PN   +  LI      G
Sbjct: 444 EMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREG 503

Query: 563 NVEGALQCRF 572
           NV  +L C  
Sbjct: 504 NV--SLACEI 511



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 105/494 (21%), Positives = 194/494 (39%), Gaps = 80/494 (16%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL---------KNECQRLLDS---GEVE 172
           R G ++   G  K + + G+ P    DG  +  L          NE + LLD     E++
Sbjct: 291 RSGAVEEAFGFKKDMEDYGLVP----DGFTYGALINGLCKSRRSNEAKALLDEMSCAELK 346

Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCV------NKPDVNLAIRYACIV---PRADIL 223
             V +   L +  +     DE F++++  V      NK   +  +R  C +    RA +L
Sbjct: 347 PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLL 406

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
               VR+   + D ++     +   +H S  + +                    +  ++ 
Sbjct: 407 LKQMVRD-SHRPDTITYNLIIEGHFRHHSKKDAF-------------------RLLSEME 446

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           +  ++ N+Y ++ +++    + + +   ++ + M   G+  +   Y  L+   C  GN  
Sbjct: 447 NAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVS 506

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
           LA EI+ ++  +    VL  D++ Y++++   +     + + K    M   G+ PN  T+
Sbjct: 507 LACEIFDKMTKVN---VLP-DLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTY 562

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           S LI+     G +E A  L + ML  G +PN      LL++  ++   ++    F+S  +
Sbjct: 563 SGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKS--M 620

Query: 462 SKTQVALGEDYDG----NTDRISNMEHKDK-QSITNTPNFVPNSH-YSSF--------DK 507
               V L     G    N     NME   +  S       VP+ H YSS         D+
Sbjct: 621 LDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADR 680

Query: 508 RFSF-----------KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTIL 554
             +F            P    YN L+   C   D    + + N +   GL PN +++T L
Sbjct: 681 EKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 740

Query: 555 IDACGGSGNVEGAL 568
           ID     G++  A 
Sbjct: 741 IDGSCKVGDISNAF 754



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 107/244 (43%), Gaps = 14/244 (5%)

Query: 224 FCNFVREFGKKRDLVSA----LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           +   +  + K  DL SA     R  D   K    PN  I   +++      D  K  + +
Sbjct: 562 YSGLIHGYLKNGDLESAEQLVQRMLDTGLK----PNDVIYIDLLESYFKSDDIEKVSSTF 617

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           + +  Q V L+  ++  L++   ++ +++    V   ++K G + D+  Y+ L+   C  
Sbjct: 618 KSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLC-- 675

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
             T   ++ +G +  +  KGV   ++  Y+ ++     +     A  V   +L+ G+ PN
Sbjct: 676 -KTADREKAFGILDEMSKKGV-DPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 733

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +T++SLI+     G +  A +L+ EML  G  P++   ++L   C  A   ++A  L  
Sbjct: 734 CVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIE 793

Query: 458 SWTL 461
              L
Sbjct: 794 EMFL 797



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 115/295 (38%), Gaps = 53/295 (17%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           EV   M+  G+   +   N LLK    A     A  +  +V+       +  DV+TYST+
Sbjct: 195 EVVLMMRDRGMAPSIRCCNALLKDLLRAD----AMALLWKVREFMVGAGISPDVYTYSTL 250

Query: 370 VKVFADAKWWQMALKV-----------------------------------KEDMLSAGV 394
           ++ +   + +  A KV                                   K+DM   G+
Sbjct: 251 IEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGL 310

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+  T+ +LIN    +    +A  L +EM  A  +PN      L+   +     D AF+
Sbjct: 311 VPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFK 370

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           + +    +  Q      YD     +  M   D+ S+      V +SH          +P 
Sbjct: 371 MIKEMVAAGVQPN-KITYDNLVRGLCKMGQMDRASLL-LKQMVRDSH----------RPD 418

Query: 515 TTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           T TYN++++     + +  A  L++EM   G+SPN  +++I+I     SG  E A
Sbjct: 419 TITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKA 473



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 6/141 (4%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +++V++SL++      D +    +   M K GV  ++  YN L+   C +G+   A+ ++
Sbjct: 663 DVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVF 722

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             +    AKG++  +  TY++++           A  +  +ML+ G+TP+   +S L   
Sbjct: 723 NSIL---AKGLVP-NCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTG 778

Query: 408 CANAGLVEQAMHLFEEMLQAG 428
           C++AG +EQAM L EEM   G
Sbjct: 779 CSSAGDLEQAMFLIEEMFLRG 799


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 149/344 (43%), Gaps = 30/344 (8%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           DIL   ++RE G  +D   +L  +     +  +P++Y C  I+      G+ +   +  +
Sbjct: 167 DILIRVYLRE-GMIQD---SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLK 222

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAG 338
           ++  + +  ++  FN L+NV   +  F    Y  + M+K G    + +YN +L   C  G
Sbjct: 223 EMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKG 282

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A E+   + H+++KGV   DV TY+ ++     +        +  DM    + PN 
Sbjct: 283 RFKAAIEL---LDHMKSKGV-DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNE 338

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-- 456
           +T+++LIN  +N G V  A  L  EML  G  PN    N L+   +    F  A ++F  
Sbjct: 339 VTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYM 398

Query: 457 -RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
             +  L+ ++V+ G   DG               +     F     +    KR       
Sbjct: 399 MEAKGLTPSEVSYGVLLDG---------------LCKNAEFDLARGFYMRMKRNGVCVGR 443

Query: 516 TTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
            TY  ++   C + +  +A  L+NEM   G+ P+ ++++ LI+ 
Sbjct: 444 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALING 487



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 145/321 (45%), Gaps = 22/321 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P++     +I+V    G + KS  + + +        I  +N++++      +F   +E+
Sbjct: 231 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 290

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
             +M+  GV AD+ +YN+L+   C +        +  +++    K ++  +  TY+T++ 
Sbjct: 291 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMR----KRMIHPNEVTYNTLIN 346

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F++     +A ++  +MLS G++PN +T+++LI+   + G  ++A+ +F  M   G  P
Sbjct: 347 GFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTP 406

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE-DYDGNTDRISNMEHKDKQSI 490
           +     +LL    +  +FD A   +    + +  V +G   Y G  D +      D+  +
Sbjct: 407 SEVSYGVLLDGLCKNAEFDLARGFY--MRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVV 464

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNH 548
                 +        D      P   TY+ L+   C    +   K ++  +  VGLSPN 
Sbjct: 465 -----LLNEMSKDGID------PDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNG 513

Query: 549 ISWTILIDACGGSGNVEGALQ 569
           I ++ LI  C   G ++ A++
Sbjct: 514 IIYSTLIYNCCRMGCLKEAIR 534



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 108/251 (43%), Gaps = 10/251 (3%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           I+P      C  +  +G   + + A   +D   K    P  +   +++   G+C  G   
Sbjct: 579 ILPNTVSFDC-LINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLK--GLCKGGHLR 635

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           ++    + L +    ++  ++N+L+     + +L   + ++  M +  ++ D  +Y  L+
Sbjct: 636 EAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLI 695

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C  G TV+A       K  EA+G +  +   Y+  V     A  W+  +  +E M +
Sbjct: 696 SGLCRKGKTVIAILF---AKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDN 752

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G TP+ +T +++I+  +  G +E+   L  EM      PN    NILL    +      
Sbjct: 753 LGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVST 812

Query: 452 AFRLFRSWTLS 462
           +F L+RS  L+
Sbjct: 813 SFLLYRSIILN 823



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 139/354 (39%), Gaps = 43/354 (12%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305
           +K +  PN     T+I+     G  + +  +  ++ S  ++ N   FN+L++  ++  + 
Sbjct: 330 RKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 389

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           K  L+++  M+  G+     SY +LL   C      LA+  Y  +K     GV  +   T
Sbjct: 390 KEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR---NGVC-VGRIT 445

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+ ++       +   A+ +  +M   G+ P+ +T+S+LIN     G  + A  +   + 
Sbjct: 446 YTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIY 505

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI------ 479
           + G  PN    + L+  C        A R++ +  L       G   D  T  +      
Sbjct: 506 RVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILE------GHTRDHFTFNVLVTSLC 559

Query: 480 ---SNMEHKDKQSITNTPNFVPNS------------------HYSSFDK--RFSFKPTTT 516
                 E ++      +   +PN+                   +S FD+  +    PT  
Sbjct: 560 KAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFF 619

Query: 517 TYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           TY  L+K  C   +  +A   +  +  V  + + + +  L+ A   SGN+  A+
Sbjct: 620 TYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAV 673



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 103/269 (38%), Gaps = 57/269 (21%)

Query: 305  LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            L+  L++ K     GV  D  ++N+L+  CC  G    A ++   VK + + G+  LD  
Sbjct: 845  LEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDL---VKVMTSLGI-SLDKD 900

Query: 365  TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            T   +V V      +Q +  V  +M   G++P +  +  LIN     G ++ A  + EEM
Sbjct: 901  TCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEM 960

Query: 425  LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
            +     P +   + +++A  +  + D A  L R                           
Sbjct: 961  IAHKICPPNVAESAMVRALAKCGKADEATLLLR--------------------------- 993

Query: 485  KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV-- 542
                                F  +    PT  ++  LM  CC +   ++AL  E+R V  
Sbjct: 994  --------------------FMLKMKLVPTIASFTTLMHLCCKNGNVIEAL--ELRVVMS 1031

Query: 543  --GLSPNHISWTILIDACGGSGNVEGALQ 569
              GL  + +S+ +LI      G++  A +
Sbjct: 1032 NCGLKLDLVSYNVLITGLCAKGDMALAFE 1060



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 315  MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
            M K+ ++  +AS+  L+  CC  GN + A E+    + + +   LKLD+ +Y+ ++    
Sbjct: 995  MLKMKLVPTIASFTTLMHLCCKNGNVIEALEL----RVVMSNCGLKLDLVSYNVLITGLC 1050

Query: 375  DAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
                  +A ++ E+M   G   N  T+ +LI  
Sbjct: 1051 AKGDMALAFELYEEMKGDGFLANATTYKALIRG 1083


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 154/345 (44%), Gaps = 37/345 (10%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN+ I  T+ID C   GD  ++R  ++ +    +  N Y F  L+N        K   +
Sbjct: 194 SPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFD 253

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +++ M+  G+  ++ +YN L+   C  G    A +++ E++    +GV + +V TY+T++
Sbjct: 254 LFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRE---RGV-EANVVTYNTLI 309

Query: 371 KVFA-DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
                + + W+ A K+ + M  A V+PN IT+++LI    + G +++A  L +++   G 
Sbjct: 310 GGMCREERVWE-AEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGL 368

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKD 486
            P+    NIL++   +A  +     L R      +S ++V      D    R+  ME K 
Sbjct: 369 SPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYV-RLQEME-KA 426

Query: 487 KQSITNTPNF--VPNSHYSSF--------------DKRF------SFKPTTTTYNILMKA 524
            Q  ++   F  VP+ +                   K F        +P+   YN ++  
Sbjct: 427 FQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHG 486

Query: 525 CCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            C +   YR   L+ EM   GL PN  S++ +I      G  E A
Sbjct: 487 YCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEA 531



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 125/302 (41%), Gaps = 29/302 (9%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE-VYKNMQKLGVMADMASYNILLK 332
           K+   + ++  + +     +FNSL+        F    ++ N  K  V  D+ S+ I++K
Sbjct: 111 KALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNELKERVKFDVYSFGIMIK 170

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
            CC  GN   + ++ G ++ +     L  +V  Y+T++         + A    + M   
Sbjct: 171 GCCENGNLDKSFQLLGLLQDMG----LSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEM 226

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G+  N  T++ LIN     GL +    LFE+M   G  PN    N L+       +  RA
Sbjct: 227 GLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRA 286

Query: 453 FRLF---RSWTLSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
           F LF   R   +    V       G    +R+   E    Q                  K
Sbjct: 287 FDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQM-----------------K 329

Query: 508 RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           + +  P   TYN L+   C   +  +  +L++++++ GLSP+ +++ ILI+    +GN +
Sbjct: 330 KAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWK 389

Query: 566 GA 567
           G 
Sbjct: 390 GV 391



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 110/245 (44%), Gaps = 51/245 (20%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           A +  D  KK   SPN+    T+I   G C  G+  K+ ++ + L+S  ++ ++  +N L
Sbjct: 321 AEKLVDQMKKAAVSPNLITYNTLIG--GFCDVGNLDKASSLLDQLKSNGLSPSLVTYNIL 378

Query: 298 MN-------------------------------------VNAHDLKFTLEVYKNMQKLGV 320
           +                                      V   +++   ++Y +M+K G+
Sbjct: 379 IEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGL 438

Query: 321 MADMASYNILLKACCLAGNTVLAQEIY---GEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
           + D+  Y +L+   C+ GN   + +++   GE+ H+E   V+      Y+T++  +    
Sbjct: 439 VPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEM-HVEPSDVI------YNTMIHGYCKED 491

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
               AL++  +M + G+ PN  ++SS+I      G  E+A  L ++M++   +P++   N
Sbjct: 492 NSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASILN 551

Query: 438 ILLQA 442
           ++ +A
Sbjct: 552 MISKA 556


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 153/360 (42%), Gaps = 65/360 (18%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDA-----SKKHLSSPNMYICRTIIDVCGIC--GDYMK 274
           + F   +    K R +  AL  ++      S   L  P++    T+ID  G+C  G   +
Sbjct: 341 VTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLID--GLCKVGRQEE 398

Query: 275 SRAIYEDLRSQNVTL-NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
              + E +RSQ   + N   +N L++    A  ++   E++  M K GV  ++ + N L+
Sbjct: 399 GLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLV 458

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C  G    A E + E   ++ KG LK +  TY+ +++ F +    + A+++ ++ML 
Sbjct: 459 DGMCKHGRINGAVEFFNE---MQGKG-LKGNAVTYTALIRAFCNVNNIEKAMELFDEMLE 514

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           AG +P+ I + +LI+  + AG +++A  +  +M +AG  P+    N+L+       + D 
Sbjct: 515 AGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDE 574

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           A+ + +                        ME+                           
Sbjct: 575 AYEMLKE-----------------------MENA------------------------GI 587

Query: 512 KPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           KP   TYN L+   +   D+     LM +M   GL P  +++  LI A   +GN++ A++
Sbjct: 588 KPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMK 647



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 105/242 (43%), Gaps = 7/242 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +R F    ++  A+  +D   +   SP+  +  T+I      G   ++  +   
Sbjct: 487 VTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSK 546

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++    + +I  FN L+N     + L    E+ K M+  G+  D  +YN L+      G+
Sbjct: 547 MKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGD 606

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTPNT 398
              A  +   +K +  +G++   V TY  ++  +        A+K+  DM S   V PNT
Sbjct: 607 FSTAHRL---MKKMVKEGLVP-TVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNT 662

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           + ++ LIN+      V+ A+ L ++M   G +PN+   N + +   E     +AF L   
Sbjct: 663 VIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDR 722

Query: 459 WT 460
            T
Sbjct: 723 MT 724


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 7/194 (3%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           TI+DV        K+  ++  LR +  +++   +N ++N           LEV K M + 
Sbjct: 166 TILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWCLIKRTPKALEVLKEMVER 224

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  ++ +YN +LK    AG    A E + E+K  + +    +DV TY+T+V  F  A  
Sbjct: 225 GINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCE----IDVVTYTTVVHGFGVAGE 280

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            + A  V ++M+  GV P+  T++++I        VE A+ +FEEM++ G EPN    N+
Sbjct: 281 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 340

Query: 439 LLQACVEACQFDRA 452
           L++    A +F R 
Sbjct: 341 LIRGLFHAGEFSRG 354



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 23/264 (8%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           ++++ NM + G   D+AS+N +L   C +     A E++  +     +G   +D  TY+ 
Sbjct: 146 VKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL-----RGRFSVDTVTYNV 200

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I+  +   K    AL+V ++M+  G+ PN  T+++++     AG +  A   F EM +  
Sbjct: 201 ILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRD 260

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           CE +      ++     A +  RA  +F          ++   Y+     I  +  KD  
Sbjct: 261 CEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA-TYNA---MIQVLCKKD-- 314

Query: 489 SITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGL 544
              N  N V       F++  R  ++P  TTYN+L++      ++ R + LM  M   G 
Sbjct: 315 ---NVENAV-----VMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGC 366

Query: 545 SPNHISWTILIDACGGSGNVEGAL 568
            PN  ++ ++I        VE AL
Sbjct: 367 EPNFQTYNMMIRYYSECSEVEKAL 390



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 92/192 (47%), Gaps = 6/192 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLE 310
           +PN+    T++      G    +   + +++ ++  +++  + ++++    A ++K    
Sbjct: 227 NPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARN 286

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+  M + GV+  +A+YN +++  C   N   A  ++ E+     +   + +V TY+ ++
Sbjct: 287 VFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEM----VRRGYEPNVTTYNVLI 342

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +    A  +    ++ + M + G  PN  T++ +I   +    VE+A+ LFE+M    C 
Sbjct: 343 RGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCL 402

Query: 431 PNSQCCNILLQA 442
           PN    NIL+  
Sbjct: 403 PNLDTYNILISG 414



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/189 (20%), Positives = 94/189 (49%), Gaps = 9/189 (4%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           T++   G+ G+  ++R +++++  + V  ++  +N+++ V     +++  + +++ M + 
Sbjct: 270 TVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR 329

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   ++ +YN+L++    AG     +E+   ++ +E +G  + +  TY+ +++ +++   
Sbjct: 330 GYEPNVTTYNVLIRGLFHAGEFSRGEEL---MQRMENEGC-EPNFQTYNMMIRYYSECSE 385

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ---AMHLFEEMLQAGCEPNSQC 435
            + AL + E M S    PN  T++ LI+        E    A  L  EM++ G  P    
Sbjct: 386 VEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFT 445

Query: 436 CNILLQACV 444
            N +L   +
Sbjct: 446 FNRVLNGLL 454


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 134/319 (42%), Gaps = 55/319 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++    ++ID  G      ++  +++++ S+ + L+   + +L+   + A  +     
Sbjct: 101 TPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASS 160

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           VYK M   G + D+ + + ++   C AG    A  I+   K +EA+G+   +V  YS ++
Sbjct: 161 VYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIF---KSMEARGLAPNEV-VYSALI 216

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A+    AL++   M  A  TP+TIT++ LI+    +G V  A   F+EML+AGC+
Sbjct: 217 HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCK 276

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P+    NIL+    +A                           GNTD    +   D  S 
Sbjct: 277 PDVYTYNILISGFCKA---------------------------GNTDAACGV-FDDMSSS 308

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNH 548
             +PN V                   TY  L+   C      KA +    M+  G  P+ 
Sbjct: 309 RCSPNVV-------------------TYGTLISGLCKRRQLTKASLYYQHMKERGCPPDS 349

Query: 549 ISWTILIDACGGSGNVEGA 567
             ++ L+D    SG +EG 
Sbjct: 350 FVYSSLVDGLCKSGKLEGG 368



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 10/216 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + +   +R   +   +  A   Y         P++    T+ID  G+C  G    +  I+
Sbjct: 140 VCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMID--GLCKAGRIGAAVRIF 197

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           + + ++ +  N  V+++L++    A  +   LE+   M+K     D  +YNIL+   C +
Sbjct: 198 KSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKS 257

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G+   A+  + E+  LEA    K DV+TY+ ++  F  A     A  V +DM S+  +PN
Sbjct: 258 GDVAAARAFFDEM--LEAG--CKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPN 313

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
            +T+ +LI+       + +A   ++ M + GC P+S
Sbjct: 314 VVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDS 349



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 166/406 (40%), Gaps = 55/406 (13%)

Query: 74  YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV 133
           Y  +   LAK+ +++E   ++E +  + G     A+  +L    +G+ K    GR++  +
Sbjct: 37  YTTIVDWLAKNKKIQEAVALMEKIT-ANGCTPTIATYNAL---LNGLCKM---GRLEEAI 89

Query: 134 GVLKKLNELGVAP-----LELFDGSG--------FKLLKNECQRLLDSGEVEMFVGLMEV 180
            +L+K+ + G  P       L DG G        +KL K    R L    V     +  +
Sbjct: 90  DLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGL 149

Query: 181 LEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSA 240
           L+  ++P      +    Q CV  PDV              +     +    K   + +A
Sbjct: 150 LQAGKIPQASSVYKTMTSQGCV--PDV--------------VTLSTMIDGLCKAGRIGAA 193

Query: 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI------YEDLRSQNVTLNIYVF 294
           +R + + +    +PN  +   +I   G+C    K+R +         ++    T +   +
Sbjct: 194 VRIFKSMEARGLAPNEVVYSALIH--GLC----KARKMDCALEMLAQMKKAFCTPDTITY 247

Query: 295 NSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           N L++    + D+      +  M + G   D+ +YNIL+   C AGNT  A  ++ ++  
Sbjct: 248 NILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSS 307

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
                    +V TY T++      +    A    + M   G  P++  +SSL++    +G
Sbjct: 308 SRCSP----NVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSG 363

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            +E    LF+EM ++G   NSQ    L+    +A + D A  LF +
Sbjct: 364 KLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNA 408



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 112/269 (41%), Gaps = 33/269 (12%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +++IL+     AG  + A  +  E           +D+ TY+TIV   A  K  Q A+ +
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQET----TTNGCTIDIHTYTTIVDWLAKNKKIQEAVAL 56

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            E + + G TP   T+++L+N     G +E+A+ L  +++  GC P+      L+    +
Sbjct: 57  MEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGK 116

Query: 446 ACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
             +   A++LF+          T+  T +  G    G   + S++ +K   S    P+ V
Sbjct: 117 KKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSV-YKTMTSQGCVPDVV 175

Query: 498 PNSH-----------------YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNE 538
             S                  + S + R    P    Y+ L+   C       AL  + +
Sbjct: 176 TLSTMIDGLCKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQ 234

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGA 567
           M+    +P+ I++ ILID    SG+V  A
Sbjct: 235 MKKAFCTPDTITYNILIDGLCKSGDVAAA 263



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 118/296 (39%), Gaps = 37/296 (12%)

Query: 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
           M + AH L    E   N    G   D+ +Y  ++    LA N  + QE    ++ + A G
Sbjct: 14  MLIQAHSL--AQETTTN----GCTIDIHTYTTIVDW--LAKNKKI-QEAVALMEKITANG 64

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
                + TY+ ++         + A+ +   ++  G TP+ +T++SLI+         +A
Sbjct: 65  CTP-TIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEA 123

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS---KTQVALGEDYDG 474
             LF+EM   G   ++ C   L++  ++A +  +A  ++++ T        V L    DG
Sbjct: 124 YKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDG 183

Query: 475 --NTDRISNMEH--KDKQSITNTPNFVPNSH-----------------YSSFDKRFSFKP 513
                RI       K  ++    PN V  S                   +   K F   P
Sbjct: 184 LCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC-TP 242

Query: 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            T TYNIL+   C   D    +A  +EM   G  P+  ++ ILI     +GN + A
Sbjct: 243 DTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAA 298


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1080

 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 179/396 (45%), Gaps = 46/396 (11%)

Query: 189 KELDEEFRIVQLCVN---KPDV---NLAIRYACIVPRAD------------------ILF 224
           K  DE +RI+    N   KPDV    + I+  C   R                    + +
Sbjct: 244 KRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTY 303

Query: 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284
              + +FG   D  S +  ++A K    + N+     +ID     G   ++  ++++++ 
Sbjct: 304 ITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQ 363

Query: 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + +    Y +NSL++  + A      LE++K+M   G   +  ++ + +     +G ++ 
Sbjct: 364 KGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIK 423

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A + Y   + +++KG++  DV   + ++   A +    MA +V  ++ + GV+P+TIT++
Sbjct: 424 AIQRY---ELMKSKGIVP-DVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYT 479

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
            +I  C+ A   ++A+ +F +M++  C P+    N L+    +A + D A+R+F  + L 
Sbjct: 480 MMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIF--YQLK 537

Query: 463 KTQVALGEDYDGNTDR-ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
           +  +   E  DG  +  ++ +  + K  +    + +   ++S      ++ P   TYN +
Sbjct: 538 EMNL---EPTDGTYNTLLAGLGREGK--VKEVMHLLEEMYHS------NYPPNLITYNTI 586

Query: 522 MKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
           +   C +     AL  +  M T G  P+  S+  +I
Sbjct: 587 LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVI 622



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 141/316 (44%), Gaps = 29/316 (9%)

Query: 255  NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
            + ++C  I  +C      +++  + +  +S  V+L   ++NSL+   V+ + +     ++
Sbjct: 720  DFFLCPLIKHLCK-QKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLF 778

Query: 313  KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
              M++LG   D  +YN+LL A    G ++  +E+    + +  KG     V TY+TI+  
Sbjct: 779  AEMKELGCGPDEFTYNLLLDA---MGKSMRIEEMLKVQEEMHRKGYESTYV-TYNTIISG 834

Query: 373  FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
               ++  + A+ +  +++S G +P   T+  L++    AG +E A +LF EML+ GC+ N
Sbjct: 835  LVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKAN 894

Query: 433  SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
                NILL     A   ++   LF+                   D+  N + K    I +
Sbjct: 895  CTIYNILLNGHRIAGNTEKVCHLFQDM----------------VDQGINPDIKSYTIIID 938

Query: 493  T--PNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
            T       N   + F +      +P   TYN+L+          +A  L NEM+  G+ P
Sbjct: 939  TLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVP 998

Query: 547  NHISWTILIDACGGSG 562
            N  ++  LI   G +G
Sbjct: 999  NLYTYNSLILHLGKAG 1014



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 135/342 (39%), Gaps = 53/342 (15%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           FGK+RD+ + L      + H   PN+Y     I V G                       
Sbjct: 205 FGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLG----------------------- 241

Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
                      A        +   M+  G   D+ ++ +L++  C AG    A++++ ++
Sbjct: 242 ----------QAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKM 291

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K    K   K D  TY T++  F D    Q  +++   M + G   N + ++++I+A   
Sbjct: 292 K----KSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQ 347

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G V +A+ +F+EM Q G  P     N L+   ++A +F  A  LF+   +       G 
Sbjct: 348 VGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIH------GP 401

Query: 471 DYDGNTDRI-SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD- 528
             +G T  +  N   K  +SI     +          K     P     N ++       
Sbjct: 402 KPNGYTHVLFINYYGKSGESIKAIQRY-------ELMKSKGIVPDVVAGNAVLFGLAKSG 454

Query: 529 -YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
                K + +E++ +G+SP+ I++T++I  C  +   + A++
Sbjct: 455 RLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVK 496



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 6/226 (2%)

Query: 233  KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
            K R L  A+  Y        SP       ++D     G    +  ++ ++       N  
Sbjct: 837  KSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCT 896

Query: 293  VFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            ++N L+N +  A + +    ++++M   G+  D+ SY I++   C AG        + ++
Sbjct: 897  IYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQL 956

Query: 351  KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
              +     L+ D+ TY+ ++     +K  + A+ +  +M   G+ PN  T++SLI     
Sbjct: 957  LEMG----LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1012

Query: 411  AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            AG   +A  ++EE+L  G +PN    N L++    +   D A+  +
Sbjct: 1013 AGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAY 1058



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 85/168 (50%), Gaps = 6/168 (3%)

Query: 268  ICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMA 325
            I G+  K   +++D+  Q +  +I  +  +++    A  L   L  ++ + ++G+  D+ 
Sbjct: 907  IAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLI 966

Query: 326  SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
            +YN+L+      G +   +E       ++ KG++  +++TY++++     A     A K+
Sbjct: 967  TYNLLIDGL---GKSKRLEEAVSLFNEMQKKGIVP-NLYTYNSLILHLGKAGKAAEAGKM 1022

Query: 386  KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
             E++L+ G  PN  T+++LI   + +G  + A   +  M+  GC PNS
Sbjct: 1023 YEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNS 1070



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +LF N+   +GK  + + A++ Y+  K     P++     ++      G    ++ ++ +
Sbjct: 409 VLFINY---YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHE 465

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           L++  V+ +   +  ++   +   KF   ++++ +M +   + D+ + N L+     AG 
Sbjct: 466 LKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGR 525

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  I+ ++K +     L+    TY+T++         +  + + E+M  +   PN I
Sbjct: 526 GDEAWRIFYQLKEMN----LEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 581

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           T++++++     G V  A+ +   M   GC P+    N ++   V+  +++ AF +F
Sbjct: 582 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIF 638



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 32/252 (12%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M++ G++ +  +YN L+     +G    A E+Y   + +   GV+   V TYS ++  F 
Sbjct: 151 MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVY---RVMMVDGVVP-SVRTYSVLMVAFG 206

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
             +  +  L +  +M + GV PN  +++  I     A   ++A  +  +M   GC+P+  
Sbjct: 207 KRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVI 266

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM-------EHKDK 487
              +L+Q   +A +   A  +F  W + K+        D   DR++ +       ++ D 
Sbjct: 267 THTVLIQVLCDAGRISDAKDVF--WKMKKS--------DQKPDRVTYITLLDKFGDNGDS 316

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLS 545
           QS+    N +    Y+              Y  ++ A C     +    + +EM+  G+ 
Sbjct: 317 QSVMEIWNAMKADGYND---------NVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIV 367

Query: 546 PNHISWTILIDA 557
           P   S+  LI  
Sbjct: 368 PEQYSYNSLISG 379



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 18/262 (6%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           EV+  MQ+  V A++ ++  +     + G    A      +  ++  G++ L+ +TY+ +
Sbjct: 111 EVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPV---ALPVMKEAGIV-LNAYTYNGL 166

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           V     + + + AL+V   M+  GV P+  T+S L+ A      VE  + L  EM   G 
Sbjct: 167 VYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGV 226

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +PN     I ++   +A +FD A+R+     L+K +   G   D  T  +      D   
Sbjct: 227 KPNVYSYTICIRVLGQAKRFDEAYRI-----LAKMENE-GCKPDVITHTVLIQVLCDAGR 280

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN 547
           I++  +           K+   KP   TY  L+       D   V  + N M+  G + N
Sbjct: 281 ISDAKDVFWKM------KKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDN 334

Query: 548 HISWTILIDACGGSGNVEGALQ 569
            +++T +IDA    G V  AL+
Sbjct: 335 VVAYTAVIDALCQVGRVFEALE 356



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 57/323 (17%), Positives = 138/323 (42%), Gaps = 22/323 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P++    ++ID     G   ++  I+  L+  N+      +N+L+     +  +K  + +
Sbjct: 508 PDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHL 567

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M       ++ +YN +L   C  G    A ++   +  +  KG +  D+ +Y+T++ 
Sbjct: 568 LEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDM---LYSMTTKGCIP-DLSSYNTVIY 623

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE-MLQAGCE 430
                + +  A  +   M    + P+  T  +++ +    GL+++A+H+ ++  LQ G +
Sbjct: 624 GLVKEERYNEAFSIFCQMKKV-LIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSK 682

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
            +   C+ L++  ++    +++     +  ++ + + L + +         ++H  KQ  
Sbjct: 683 TDRSSCHSLMEGILKKAGIEKSIEF--AEIIASSGITLDDFF-----LCPLIKHLCKQKK 735

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNH 548
               + +         K F     T  YN L+     +      + L  EM+ +G  P+ 
Sbjct: 736 ALEAHELVKKF-----KSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDE 790

Query: 549 ISWTILIDACGGSGNVEGALQCR 571
            ++ +L+DA G S  +E  L+ +
Sbjct: 791 FTYNLLLDAMGKSMRIEEMLKVQ 813



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 6/156 (3%)

Query: 253  SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
            +P++     IID     G        +  L    +  ++  +N L++    +  L+  + 
Sbjct: 927  NPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVS 986

Query: 311  VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            ++  MQK G++ ++ +YN L+     AG    A ++Y E   L  KG  K +VFTY+ ++
Sbjct: 987  LFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEE---LLTKG-WKPNVFTYNALI 1042

Query: 371  KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
            + ++ +     A      M+  G  PN+ T+  L N
Sbjct: 1043 RGYSVSGSTDSAYAAYGRMIVGGCLPNSSTYMQLPN 1078


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 145/313 (46%), Gaps = 23/313 (7%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++    ++ID  G      ++  +++++  + + L+   + +L+   +    +     
Sbjct: 53  TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASS 112

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           VYK M   G + D+ + + ++     AG    A  I+   K +EA+G+   +V  YS ++
Sbjct: 113 VYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIF---KSMEARGLAPNEVV-YSALI 168

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A+    AL++   M  A  TP+TIT++ LI+    +G VE A   F+EML+AGC+
Sbjct: 169 HGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCK 228

Query: 431 PNSQCCNILLQACVEACQFDRA-FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           P+    NIL+    +A   D A   L +  T++   + +   Y    D ++    K +++
Sbjct: 229 PDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDI-HTYTAIVDWLAK-NKKIEEA 286

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV---GLSP 546
           +        N             PT  TYN L+   C    R++  ++ +R +   G +P
Sbjct: 287 VALMEKITAN----------GCTPTIATYNALLNGLC-KMGRLEEAIDLLRKIVDNGCTP 335

Query: 547 NHISWTILIDACG 559
           + +++T LID  G
Sbjct: 336 DVVTYTSLIDGLG 348



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 107/491 (21%), Positives = 196/491 (39%), Gaps = 75/491 (15%)

Query: 125 REGRIDCVVGVLKKLNELGVAP-----LELFDGSG--------FKLLKNECQRLLDSGEV 171
           + GR++  + +L+K+ + G  P       L DG G        +KL K    R L    V
Sbjct: 33  KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTV 92

Query: 172 EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231
                + E+L+  ++P      +      CV  PDV              +     +   
Sbjct: 93  CYTALIRELLQTGKIPQASSVYKTMTSHGCV--PDV--------------VTLSTMIDGL 136

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI------YEDLRSQ 285
            K   + +A+R + + +    +PN  +   +I   G+C    K+R +         ++  
Sbjct: 137 SKAGRIGAAVRIFKSMEARGLAPNEVVYSALIH--GLC----KARKMDCALEMLAQMKKA 190

Query: 286 NVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
             T +   +N L++    + D++     +  M + G   D+ +YNIL+   C AGNT  A
Sbjct: 191 FCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAA 250

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
                +   +       +D+ TY+ IV   A  K  + A+ + E + + G TP   T+++
Sbjct: 251 SHSLAQETTING---CTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNA 307

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           L+N     G +E+A+ L  +++  GC P+      L+    +  +   A++LF+   L  
Sbjct: 308 LLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRG 367

Query: 464 TQV------ALGEDY--DGNTDRISNMEHKDKQSITNTPNFVPNSH-------------- 501
             +      AL  +    G   + S++ +K   S    P+ V  S               
Sbjct: 368 LALDTVCYTALIRELLQTGKIPQASSV-YKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAA 426

Query: 502 ---YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILID 556
              + S + R    P    Y+ L+   C       AL  + +M+    +P+ I++ ILID
Sbjct: 427 VRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILID 485

Query: 557 ACGGSGNVEGA 567
               SG+VE A
Sbjct: 486 GLCKSGDVEAA 496



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 105/213 (49%), Gaps = 6/213 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++    ++ID  G      ++  +++++  + + L+   + +L+   +    +     
Sbjct: 334 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASS 393

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           VYK M   G + D+ + + ++     AG    A  I+   K +EA+G+   +V  YS ++
Sbjct: 394 VYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIF---KSMEARGLAPNEVV-YSALI 449

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A+    AL++   M  A  TP+TIT++ LI+    +G VE A   F+EML+AGC+
Sbjct: 450 HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCK 509

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           P+    NIL+    +A   D A  +F   + S+
Sbjct: 510 PDVYTYNILISGFCKAGNTDAACGVFDDMSSSR 542



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 6/209 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +RE  +   +  A   Y     H   P++    T+ID     G    +  I++ 
Sbjct: 373 VCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKS 432

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + ++ +  N  V+++L++    A  +   LE+   M+K     D  +YNIL+   C +G+
Sbjct: 433 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGD 492

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+  + E+  LEA    K DV+TY+ ++  F  A     A  V +DM S+  + N +
Sbjct: 493 VEAARAFFDEM--LEAG--CKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVV 548

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAG 428
           T+ +LI+       + +A   F+ M + G
Sbjct: 549 TYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 84/190 (44%), Gaps = 6/190 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   ++ ++Y+ + S     ++   +++++    A  +   + ++K+M+  G+  +   Y
Sbjct: 386 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVY 445

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           + L+   C A     A E+  ++K    K     D  TY+ ++     +   + A    +
Sbjct: 446 SALIHGLCKARKMDCALEMLAQMK----KAFCTPDTITYNILIDGLCKSGDVEAARAFFD 501

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +ML AG  P+  T++ LI+    AG  + A  +F++M  + C  N      L+    +  
Sbjct: 502 EMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRR 561

Query: 448 QFDRAFRLFR 457
           Q  +A   F+
Sbjct: 562 QLTKASLYFQ 571


>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 145/343 (42%), Gaps = 23/343 (6%)

Query: 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL----LKNECQRLLDSGEVEMFVGLME 179
           I   R+D +     KL   G+ P  +    GF L     K E  + LD   + M  G   
Sbjct: 192 IGSDRVDLIADHFDKLCRGGIEPSGV-SAHGFVLDALFCKGEVTKALDFHRLVMERG--- 247

Query: 180 VLEEFRLPVKELDEEFRIVQLCVNKPDVN---LAIRYACIVPRADILFCNFVREFGKKRD 236
               FR+ +   ++  +   L V++ +V    L++   C      + FC  +  F K+ +
Sbjct: 248 ----FRVGIVSCNKVLK--GLSVDQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGE 301

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           +  A   +   ++    P++    T+ID     G       ++     + V L++ VF+S
Sbjct: 302 MDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSS 361

Query: 297 LMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
            ++V   + DL     VYK M   G+  ++ +Y IL+K  C  G    A  +YG++    
Sbjct: 362 TIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQI---- 417

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            K  ++  + TYS+++  F      +    + EDM+  G  P+ + +  L++  +  GL+
Sbjct: 418 LKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLM 477

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             AM    +ML      N    N L+       +FD A ++FR
Sbjct: 478 LHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFR 520



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/356 (19%), Positives = 138/356 (38%), Gaps = 61/356 (17%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + + + +  F K  +L S    Y+   K    P++ I   ++D     G  + +      
Sbjct: 427 VTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVK 486

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK------A 333
           +  Q++ LN+ VFNSL++      +F   L+V++ M   G+  D+A++  +++      A
Sbjct: 487 MLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEDA 546

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C      +  +++     L  +  +  D+   + ++ +       + A K   +++   
Sbjct: 547 FCKHMKPTIGLQLF----DLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGK 602

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + P+ +T++++I    +   +++A  +FE +      PN+    IL+    +    D A 
Sbjct: 603 MEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAI 662

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
           R+F                       S M  K                          KP
Sbjct: 663 RMF-----------------------SIMAEKGS------------------------KP 675

Query: 514 TTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              TY  LM   +   D      L  EM+  G+SP+ +S++I+ID     G V+ A
Sbjct: 676 NAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEA 731



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 45/253 (17%), Positives = 110/253 (43%), Gaps = 20/253 (7%)

Query: 195 FRIVQLCVNKPDVNLAIRYACIVPRADIL---FCNFVREFGKKRDLVSALRAYDASKKHL 251
           FR++ +   KPDV         V R  I+   FC  ++           L+ +D  +++ 
Sbjct: 519 FRLMGIYGIKPDVATF----TTVMRVSIMEDAFCKHMKP-------TIGLQLFDLMQRNK 567

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTL 309
            S ++ +C  +I +   C     +   + +L    +  +I  +N+++    +   L    
Sbjct: 568 ISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAE 627

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +++ ++      +  +  IL+   C   +   A  ++     + A+   K +  TY  +
Sbjct: 628 RIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFS----IMAEKGSKPNAVTYGCL 683

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  F+ +   + + K+ E+M   G++P+ +++S +I+     G V++A ++F + + A  
Sbjct: 684 MDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKL 743

Query: 430 EPNSQCCNILLQA 442
            P+     IL++ 
Sbjct: 744 LPDVVAYAILIRG 756



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 80/187 (42%), Gaps = 11/187 (5%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           D M+   I  D+   NV +++           H ++   + + N+ +  +  D+ +YN +
Sbjct: 561 DLMQRNKISADIAVCNVVIHLLF-------KCHRIEDASKFFNNLIEGKMEPDIVTYNTM 613

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +   C       A+ I+ E+  +   G    +  T + ++ V         A+++   M 
Sbjct: 614 ICGYCSLRRLDEAERIF-ELLKVTPFGP---NTVTLTILIHVLCKNNDMDGAIRMFSIMA 669

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
             G  PN +T+  L++  + +  +E +  LFEEM + G  P+    +I++    +  + D
Sbjct: 670 EKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVD 729

Query: 451 RAFRLFR 457
            A  +F 
Sbjct: 730 EATNIFH 736


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 106/228 (46%), Gaps = 6/228 (2%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  F K  ++  A+R  +  +K    P+    R II+   + GD  ++  I + +R   
Sbjct: 528 LIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSG 587

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
               +  +N+L++  +  + ++  + V   M   G+  +  +Y I+++     G+   A 
Sbjct: 588 CAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAF 647

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           E + ++K    +G LKLDV+ Y T+++    +   Q AL V  +M S  +  NT  ++ L
Sbjct: 648 EYFTKIK----EGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNIL 703

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           I+  A  G V +A  L ++M + G  PN       + AC +A    RA
Sbjct: 704 IDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 751



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 144/356 (40%), Gaps = 53/356 (14%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++     +I++    G   K+ AI +++ S  +  N   ++ L++  ++ HD      
Sbjct: 449 TPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFR 508

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE----------------VKHLE 354
           +++ M K G+  D A YN+L++A C  GN   A  I  +                ++   
Sbjct: 509 IFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFA 568

Query: 355 AKGVLK-----LD----------VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             G +K     LD          V TY+ ++         + A+ V   M  AG+TPN  
Sbjct: 569 VAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEH 628

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR-- 457
           T++ ++   A  G + +A   F ++ + G + +      LL+AC ++ +   A  + R  
Sbjct: 629 TYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREM 688

Query: 458 -SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
            S  +++         DG   R    E  D           PN H               
Sbjct: 689 SSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIH--------------- 733

Query: 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           TY   + ACC   D  R + +++EM  VGL PN  ++T LI     +   + AL+C
Sbjct: 734 TYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKC 789



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/381 (19%), Positives = 144/381 (37%), Gaps = 104/381 (27%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327
           GD   +RA +E++R++ +  N +VF SL++  A   D++  L   + M+  G+   + +Y
Sbjct: 291 GDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMKAEGIELTIVTY 350

Query: 328 NILL-----------------------------------KACCLAGNTVLAQEIYGEVKH 352
           +IL+                                    A C +GN   A+E+   V  
Sbjct: 351 SILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNIIHAHCQSGNMDRAEEL---VHE 407

Query: 353 LEAKGV----------------------------------LKLDVFTYSTIVKVFADAKW 378
           +E  G+                                      + +Y  ++ ++     
Sbjct: 408 MEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGK 467

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A+ + ++M S+G+  N  T+S LI+   +      A  +FEEML++G +P+    N+
Sbjct: 468 VAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNL 527

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQ--------VALGEDYDGNTDRISNMEHKDKQSI 490
           L++A  +    DRA R+       + Q        +  G    G+  R  ++        
Sbjct: 528 LIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDI-------- 579

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNH 548
                           +R    PT  TYN L+          R  +++N+M   G++PN 
Sbjct: 580 ------------LDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNE 627

Query: 549 ISWTILIDACGGSGNVEGALQ 569
            ++TI++     +G++  A +
Sbjct: 628 HTYTIIMRGYAATGDIAKAFE 648



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 90/182 (49%), Gaps = 6/182 (3%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           +R +    D+  A   +   K+     ++YI  T++  C   G    + A+  ++ SQ +
Sbjct: 634 MRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKI 693

Query: 288 TLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             N +V+N L++  A   D+    ++ K M++ GV  ++ +Y   + ACC AG+   AQ 
Sbjct: 694 ARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQT 753

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +  E+  +  K  LK    TY+T++K +A A     ALK  E+M  AG+ P+   +  L+
Sbjct: 754 VIDEMSDVGLKPNLK----TYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLV 809

Query: 406 NA 407
            +
Sbjct: 810 TS 811



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 91/190 (47%), Gaps = 6/190 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +PN +    I+      GD  K+   +  ++   + L++Y++ +L+     +  ++  L 
Sbjct: 624 TPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALA 683

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M    +  +   YNIL+      G+   A ++   +K ++  GV   ++ TY++ +
Sbjct: 684 VTREMSSQKIARNTFVYNILIDGWARRGDVWEAADL---MKQMKEDGVPP-NIHTYTSYI 739

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A   Q A  V ++M   G+ PN  T+++LI   A A L ++A+  FEEM  AG +
Sbjct: 740 NACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLK 799

Query: 431 PNSQCCNILL 440
           P+    + L+
Sbjct: 800 PDEAAYHCLV 809


>gi|194690470|gb|ACF79319.1| unknown [Zea mays]
          Length = 671

 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 125/266 (46%), Gaps = 17/266 (6%)

Query: 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250
           L+   R++   ++ P V+  I  A    RAD L   F R F  +R   S   A  A    
Sbjct: 11  LENSIRLLSPTLDAPLVHGVISGAASAGRAD-LALQFFR-FAYRRGGFSPEGATFA---- 64

Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310
           L  P +   R +     +  D M S ++  D  +    ++ Y   ++        +  ++
Sbjct: 65  LLVPALASRRMLNHARCLVLDTMPSFSVAPDEPTLAALISAYGRAAIP-------QEAVK 117

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +++ M  +GV     SYN +LKA    G   +A+ IY     + A GV   DV TY+T++
Sbjct: 118 LFRMMPNIGVPRTALSYNAVLKAILCRGREAMARRIY---NAMIADGVAP-DVSTYNTLI 173

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F   K  + A++V  DM   GVTP+  T+++L+NA   AG +E A  +F+EM   G E
Sbjct: 174 WGFGLCKKMETAVRVFGDMKGHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMAGEGTE 233

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
            NS   N++++  VE  + + A  LF
Sbjct: 234 RNSVSYNVMIKGYVEGNRVEEAVALF 259



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 8/185 (4%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A R Y+A      +P++    T+I   G+C     +  ++ D++   VT ++  +N+L+N
Sbjct: 150 ARRIYNAMIADGVAPDVSTYNTLIWGFGLCKKMETAVRVFGDMKGHGVTPDVTTYNTLLN 209

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
             V A DL+   +V+  M   G   +  SYN+++K   + GN V  +E       +  KG
Sbjct: 210 AWVRAGDLESARKVFDEMAGEGTERNSVSYNVMIKG-YVEGNRV--EEAVALFAEMAEKG 266

Query: 358 VLKLDVFTYSTIVKVFADAKWW-QMALKVKEDMLSAGVTP-NTITWSSLINACANAGLVE 415
            L+L   T++ ++    D +     A K  +DM    +TP +   +  L+     AG ++
Sbjct: 267 -LRLSEKTFAALMPGLCDDQGRVAEARKAVDDMAERRLTPKDKSVFLRLVTTLCKAGDLD 325

Query: 416 QAMHL 420
            A+ +
Sbjct: 326 GALEV 330



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 96/204 (47%), Gaps = 15/204 (7%)

Query: 254 PNMYICRTIIDVCGIC------GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDL 305
           PN+ + RT +    +       G    +R IY  + +  V  ++  +N+L+        +
Sbjct: 123 PNIGVPRTALSYNAVLKAILCRGREAMARRIYNAMIADGVAPDVSTYNTLIWGFGLCKKM 182

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           +  + V+ +M+  GV  D+ +YN LL A   AG+   A++++ E   +  +G  +  V +
Sbjct: 183 ETAVRVFGDMKGHGVTPDVTTYNTLLNAWVRAGDLESARKVFDE---MAGEGTERNSV-S 238

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEM 424
           Y+ ++K + +    + A+ +  +M   G+  +  T+++L+   C + G V +A    ++M
Sbjct: 239 YNVMIKGYVEGNRVEEAVALFAEMAEKGLRLSEKTFAALMPGLCDDQGRVAEARKAVDDM 298

Query: 425 LQAGCEPNSQCCNILLQACVEACQ 448
            +    P  +  ++ L+     C+
Sbjct: 299 AERRLTPKDK--SVFLRLVTTLCK 320


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 134/319 (42%), Gaps = 55/319 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++    ++ID  G      ++  +++++  + + L+   + +L+   + A  +     
Sbjct: 232 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASS 291

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           VYK M   G + D+ + + ++   C AG    A  I+   K +EA+G+   +V  YS ++
Sbjct: 292 VYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIF---KSMEARGLAPNEV-VYSALI 347

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A+    AL++   M  A  TP+TIT++ LI+    +G VE A   F+EML+AGC+
Sbjct: 348 HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCK 407

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P+    NIL+    +A                           GNTD    +   D  S 
Sbjct: 408 PDVYTYNILVSGFCKA---------------------------GNTDAACGV-FDDMSSS 439

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNH 548
             +PN V                   TY  L+   C      KA +    M+  G  P+ 
Sbjct: 440 HCSPNVV-------------------TYGTLISGLCKRRQLTKASLYFQHMKERGCPPDS 480

Query: 549 ISWTILIDACGGSGNVEGA 567
             ++ L+D    SG +EG 
Sbjct: 481 FVYSSLVDGLCKSGKLEGG 499



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 10/216 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + +   +R   +   +  A   Y         P++    T+ID  G+C  G    +  I+
Sbjct: 271 VCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMID--GLCKAGRIGAAVRIF 328

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           + + ++ +  N  V+++L++    A  +   LE+   M+K     D  +YNIL+   C +
Sbjct: 329 KSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKS 388

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G+   A+  + E+  LEA    K DV+TY+ +V  F  A     A  V +DM S+  +PN
Sbjct: 389 GDVEAARAFFDEM--LEAG--CKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPN 444

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
            +T+ +LI+       + +A   F+ M + GC P+S
Sbjct: 445 VVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDS 480



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 131/311 (42%), Gaps = 30/311 (9%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL---GVM 321
           G+C  G  + +   +E   +   T++I+ + ++++  A + K   +    M+K+   G  
Sbjct: 139 GLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQ-DAVALMEKITANGCT 197

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
             +A+YN LL   C  G     +E    ++ +   G    DV TY++++      K    
Sbjct: 198 PTIATYNALLNGLCKMGRL---EEAIDLLRKIVDNGCTP-DVVTYTSLIDGLGKEKRSFE 253

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A K+ ++M   G+  +T+ +++LI     AG + QA  +++ M   GC P+    + ++ 
Sbjct: 254 AYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMID 313

Query: 442 ACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
              +A +   A R+F+S     L+  +V     Y      +      D            
Sbjct: 314 GLCKAGRIGAAVRIFKSMEARGLAPNEVV----YSALIHGLCKARKMD----------CA 359

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILID 556
               +   K F   P T TYNIL+   C   D    +A  +EM   G  P+  ++ IL+ 
Sbjct: 360 LEMLAQMKKAFC-TPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVS 418

Query: 557 ACGGSGNVEGA 567
               +GN + A
Sbjct: 419 GFCKAGNTDAA 429



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 132/317 (41%), Gaps = 45/317 (14%)

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGN 339
           D+ + NV +  Y         A + +    V + M++  GV   + ++N++L   C +G 
Sbjct: 93  DVETWNVLITGYCL-------AREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGK 145

Query: 340 TVLAQEIYGEVKHLEAKGV--LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            + A +      H E        +D+ TY+ IV   A  K  Q A+ + E + + G TP 
Sbjct: 146 VLAAMD------HFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPT 199

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             T+++L+N     G +E+A+ L  +++  GC P+      L+    +  +   A++LF+
Sbjct: 200 IATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFK 259

Query: 458 SW--------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH-------- 501
                     T+  T +  G    G   + S++ +K   S    P+ V  S         
Sbjct: 260 EMALRGLVLDTVCYTALIRGLLQAGKIPQASSV-YKTMTSQGCVPDVVTLSTMIDGLCKA 318

Query: 502 ---------YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHIS 550
                    + S + R    P    Y+ L+   C       AL  + +M+    +P+ I+
Sbjct: 319 GRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTIT 377

Query: 551 WTILIDACGGSGNVEGA 567
           + ILID    SG+VE A
Sbjct: 378 YNILIDGLCKSGDVEAA 394



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 86/201 (42%), Gaps = 17/201 (8%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V T + ++ VFA  K  + A  + ++ L+    P+  TW+ LI     A   E+A  +  
Sbjct: 59  VHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIR 118

Query: 423 EMLQA-GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
           EM +  G  P+ +  N++L    ++ +   A   F + T +   + +   Y    D ++ 
Sbjct: 119 EMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDI-HTYTAIVDWLAK 177

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRT 541
              K + ++        N             PT  TYN L+   C    R++  ++ +R 
Sbjct: 178 -NKKIQDAVALMEKITAN----------GCTPTIATYNALLNGLC-KMGRLEEAIDLLRK 225

Query: 542 V---GLSPNHISWTILIDACG 559
           +   G +P+ +++T LID  G
Sbjct: 226 IVDNGCTPDVVTYTSLIDGLG 246


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 122/284 (42%), Gaps = 31/284 (10%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y +M   G + +  +Y  LL++ C A     A+ ++   + + A+G    +VF+YS ++ 
Sbjct: 40  YNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVF---RGMAAQGC-SPNVFSYSILIA 95

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                +    A ++  +M+  G  PN +T+ SL++     G +++A+ LF  M+  GC P
Sbjct: 96  GLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPP 155

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISNME 483
           +    N+L+    +      A+RLF             +   +  G    G   R+ ++ 
Sbjct: 156 DGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSL- 214

Query: 484 HKDKQSITNTPN-FVPNSHYSSFDK---------------RFSFKPTTTTYNILMKACCT 527
            KD       PN F  N+    F K                    P   +YN L++  C+
Sbjct: 215 FKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCS 274

Query: 528 --DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               +  + L+ EM   G+ P+ +S+ ILID    SG ++ A++
Sbjct: 275 KGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIK 318



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 117/236 (49%), Gaps = 9/236 (3%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P   +++   +  F KK D+  A R ++   +    P ++   +++      G++ + ++
Sbjct: 154 PPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQS 213

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++D+  Q    NI+ FN+L++      D+     ++  M+ LG   D+ SYN L++  C
Sbjct: 214 LFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMC 273

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    AQ +  E+     +  +  D+ +Y+ ++  ++ +     A+K+  ++  +G+ 
Sbjct: 274 SKGKPHEAQRLLREM----IRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLE 329

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           P+  ++S++I+    AG V  A  +F++M+  G  P++    +++   +  C+ +R
Sbjct: 330 PDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAA---VVIPLVIGLCRGER 382



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 108/206 (52%), Gaps = 6/206 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P+  +   +ID     GD  ++  ++E++  +     ++ +NSL++  +   +F     +
Sbjct: 155 PDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSL 214

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +K+M + G + ++ ++N LL   C  G+ V A  ++ E++ L        DV +Y+T+++
Sbjct: 215 FKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPP----DVVSYNTLIR 270

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                     A ++  +M+ +GV P+ ++++ LI+  + +G ++ A+ LF E+ ++G EP
Sbjct: 271 GMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEP 330

Query: 432 NSQCCNILLQACVEACQFDRAFRLFR 457
           ++   + ++     A +   AF +F+
Sbjct: 331 DAFSYSTIIDCLCRAGKVGAAFVVFK 356



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 6/175 (3%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  + SL++       LK  ++++  M   G   D   YN+L+      G+   A  ++
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLF 180

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            E+  LE KG +   VFTY++++  F+    +     + +DML  G  PN  T+++L++ 
Sbjct: 181 EEM--LE-KGCIP-TVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
               G + +A  LF EM   GC P+    N L++      +   A RL R    S
Sbjct: 237 FCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRS 291



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 25/219 (11%)

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            +Y+ +++V A +           DML+AG  PNT T+  L+ +   A   E+A  +F  
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ---VALGEDYDG------ 474
           M   GC PN    +IL+       + D A  L         Q   V  G    G      
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 475 ---NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK-----------PTTTTYNI 520
                D  S M ++         N + +      D   +++           PT  TYN 
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 521 LMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           L+       ++ RV++L  +M   G  PN  ++  L+D 
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 38/182 (20%)

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            T++++ L+   A +G  +     + +ML AGC PN+     LL++  +A +F+ A  +F
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 457 R------------SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
           R            S+++    +  G+  D   + ++ M              +   H   
Sbjct: 76  RGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEM--------------IDGGH--- 118

Query: 505 FDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSG 562
                  +P   TY  L+   C      +A  L + M   G  P+ + + +LID     G
Sbjct: 119 -------QPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKG 171

Query: 563 NV 564
           ++
Sbjct: 172 DM 173


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           TI+DV        K+  ++  LR +  +++   +N ++N           LEV K M + 
Sbjct: 166 TILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWCLIKRTPKALEVLKEMVER 224

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  ++ +YN +LK    AG    A E + E+K    K   ++DV TY+T+V  F  A  
Sbjct: 225 GINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMK----KRDCEIDVVTYTTVVHGFGVAGE 280

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            + A  V ++M+  GV P+  T++++I        VE A+ +FEEM++ G EPN    N+
Sbjct: 281 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 340

Query: 439 LLQACVEACQFDRAFRLFR 457
           L++    A +F R   L +
Sbjct: 341 LIRGLFHAGEFSRGEELMQ 359



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 23/264 (8%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           ++++ NM + G   D+AS+N +L   C +     A E++  +     +G   +D  TY+ 
Sbjct: 146 VKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL-----RGRFSVDTVTYNV 200

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I+  +   K    AL+V ++M+  G+ PN  T+++++     AG +  A   F EM +  
Sbjct: 201 ILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRD 260

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           CE +      ++     A +  RA  +F          ++   Y+     I  +  KD  
Sbjct: 261 CEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA-TYNA---MIQVLCKKD-- 314

Query: 489 SITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGL 544
              N  N V       F++  R  ++P  TTYN+L++      ++ R + LM  M   G 
Sbjct: 315 ---NVENAV-----VMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGC 366

Query: 545 SPNHISWTILIDACGGSGNVEGAL 568
            PN  ++ ++I        VE AL
Sbjct: 367 EPNFQTYNMMIRYYSECSEVEKAL 390



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 92/192 (47%), Gaps = 6/192 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLE 310
           +PN+    T++      G    +   + +++ ++  +++  + ++++    A ++K    
Sbjct: 227 NPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARN 286

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+  M + GV+  +A+YN +++  C   N   A  ++ E+     +   + +V TY+ ++
Sbjct: 287 VFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEM----VRRGYEPNVTTYNVLI 342

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +    A  +    ++ + M + G  PN  T++ +I   +    VE+A+ LFE+M    C 
Sbjct: 343 RGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCL 402

Query: 431 PNSQCCNILLQA 442
           PN    NIL+  
Sbjct: 403 PNLDTYNILISG 414


>gi|302775192|ref|XP_002971013.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
 gi|300160995|gb|EFJ27611.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
          Length = 413

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 6/236 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +C  V  F +      AL AY             I R ++ VC   G ++ +   ++++ 
Sbjct: 136 YCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQGRWLVALTFFKEML 195

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
                  I  +N LM     A   +  L++   M+  GV  D  + N +L     A    
Sbjct: 196 ESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLIAAREFD 255

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A   +  VK       +KLD   Y+ I+     +K W+ AL + ++M   G+ PN +T+
Sbjct: 256 RAMLFFHSVK----SSGMKLDREVYNVILVACQKSKNWEAALSLVQEMEQTGIAPNEVTF 311

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             L+ AC NA  VE A+ L+E M Q  C PN+     L++AC +   + +A  ++R
Sbjct: 312 GPLLVACENAKQVEVALRLYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNIYR 367



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 150/361 (41%), Gaps = 60/361 (16%)

Query: 232 GKKRDLVSALRAYDASKK--HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           G++R     L      K+  H ++ N  I   + D     GD   + AI+E ++   V  
Sbjct: 6   GRRRTAFKVLEWLSDRKRGIHANAYNSLITGLMKD-----GDEADAIAIFERMKHDRVAP 60

Query: 290 NIYVFNSLMNV--------NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            +Y + ++M          +AH +   L V+ +++      D+A YN +L A    G   
Sbjct: 61  TLYTYTAVMRALSHVQGWESAHRMFSELVVHGSLK-----PDVAMYNTMLAA---YGRGH 112

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
             + +    + ++ +G ++ +V TY  +V  F       +AL     M S G+      +
Sbjct: 113 KLERVLQTWERMQKEGCVE-NVGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIY 171

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
             L+  CA  G    A+  F+EML++GC+P     N+L++A  +A               
Sbjct: 172 RGLVCVCATQGRWLVALTFFKEMLESGCKPTIVTYNVLMRALGKA--------------- 216

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS--FDKRFSF-------- 511
            K ++ L        D +  M+         T N V N   ++  FD+   F        
Sbjct: 217 GKWEIVL--------DLLPRMKASGVAPDFYTVNAVLNGLIAAREFDRAMLFFHSVKSSG 268

Query: 512 -KPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            K     YN+++ AC    ++    +L+ EM   G++PN +++  L+ AC  +  VE AL
Sbjct: 269 MKLDREVYNVILVACQKSKNWEAALSLVQEMEQTGIAPNEVTFGPLLVACENAKQVEVAL 328

Query: 569 Q 569
           +
Sbjct: 329 R 329



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 88/212 (41%), Gaps = 36/212 (16%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P +     ++   G  G +     +   +++  V  + Y  N+++N  + A +    +  
Sbjct: 201 PTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLIAAREFDRAMLF 260

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           + +++  G+  D   YN++L AC  + N   A  +   V+ +E  G+   +V T+  ++ 
Sbjct: 261 FHSVKSSGMKLDREVYNVILVACQKSKNWEAALSL---VQEMEQTGIAPNEV-TFGPLLV 316

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE--------- 422
              +AK  ++AL++ E M      PNT   +SLI AC    + +QA +++          
Sbjct: 317 ACENAKQVEVALRLYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNIYRVSSPNVYVY 376

Query: 423 ---------------------EMLQAGCEPNS 433
                                 M++ GC+ N+
Sbjct: 377 NALIDAYCRSQKYHLAKKVDRRMIEEGCQRNN 408


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 136/324 (41%), Gaps = 56/324 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMN--VNAHDLKFTL 309
           +P+ Y   T+I      G    +  +++++ ++  V  N  ++N+L+    +  +L+  L
Sbjct: 180 APDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVAL 239

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
                M   GV   +A+YN+ +    + G    A E +  V+ +  KG L  D FTY+ +
Sbjct: 240 RYRGEMVDRGVSMTVATYNLFVHTLFMEGR---AAEAHALVEEMGEKG-LAPDAFTYNIL 295

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +      + A+K+ E M+  G+    +T++SLI+A +  G+V++   LF + ++ G 
Sbjct: 296 INGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGI 355

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            P+    N L+ +       DRAF +                          M   +K+ 
Sbjct: 356 RPDLFMYNALINSHCTGGDMDRAFEI--------------------------MGEMEKKR 389

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN 547
           IT                     P   TYN LM+  C        + L+ EM   G+ P+
Sbjct: 390 IT---------------------PDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPD 428

Query: 548 HISWTILIDACGGSGNVEGALQCR 571
            +S+  LI      G+++ A++ R
Sbjct: 429 LVSYNTLISGYSMKGDIKDAVKVR 452



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 92/184 (50%), Gaps = 6/184 (3%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKL 318
           ++I    + G   ++  ++ D   + +  +++++N+L+N +    D+    E+   M+K 
Sbjct: 329 SLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKK 388

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
            +  D  +YN L++  CL G      E  G ++ +  +G+ + D+ +Y+T++  ++    
Sbjct: 389 RITPDDVTYNTLMRGLCLLGRL---DEARGLIEEMTKRGI-QPDLVSYNTLISGYSMKGD 444

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            + A+KV+++M+  G  P  +T++++I      G    A  L +EM+  G  P+      
Sbjct: 445 IKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYIS 504

Query: 439 LLQA 442
           L++ 
Sbjct: 505 LIEG 508



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 127/298 (42%), Gaps = 26/298 (8%)

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +  S ++Y  L+S ++ +     + L++       F L  + ++ +L +     ++NI+L
Sbjct: 66  HTTSLSLYSRLKSLSLPIPTASLHPLLSSLPPAPAFVL--FADIFRLRLPLSTTTFNIML 123

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           +  C AG  V A E+  ++    A         TY+T++  F      Q  +++  +M  
Sbjct: 124 RHLCTAGKPVRALELLRQMPSPNA--------VTYNTVIAGFCARGRVQAGIEIMREMRE 175

Query: 392 -AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPNSQCCNILLQACVEACQF 449
             G+ P+  T++++I+     G VE A  +F+EML  G  EPN+   N L+    +    
Sbjct: 176 RGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNL 235

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
           + A R +R   + +        Y+     +  ME +  ++         ++      ++ 
Sbjct: 236 EVALR-YRGEMVDRGVSMTVATYNLFVHTLF-MEGRAAEA---------HALVEEMGEK- 283

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
              P   TYNIL+   C +    KA  +   M   G+    +++T LI A    G V+
Sbjct: 284 GLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQ 341



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 96/194 (49%), Gaps = 10/194 (5%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFT 308
           +P+ +    +I+  G C  G   K+  ++E +  + +   +  + SL++  +    ++ T
Sbjct: 286 APDAFTYNILIN--GYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQET 343

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
             ++ +  + G+  D+  YN L+ + C  G+   A EI GE   +E K +   DV TY+T
Sbjct: 344 DRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGE---MEKKRITPDDV-TYNT 399

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +++          A  + E+M   G+ P+ +++++LI+  +  G ++ A+ + +EM+  G
Sbjct: 400 LMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKG 459

Query: 429 CEPNSQCCNILLQA 442
             P     N +++ 
Sbjct: 460 FNPTLLTYNAMIKG 473


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 131/310 (42%), Gaps = 44/310 (14%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           + E +    ++ ++Y +++L+       +     +V   M++ G   +  +YN+L+   C
Sbjct: 104 VREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLC 163

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +G     +E +G  K +E  G++  D FTY  ++     ++    A  + ++M  A + 
Sbjct: 164 RSGAV---EEAFGFKKDMEDYGLVP-DGFTYGALINGLCKSRRSNEAKALLDEMSCAELK 219

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN + +++LI+     G  ++A  + +EM+ AG +PN    + L++   +  Q DRA  L
Sbjct: 220 PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLL 279

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK--- 512
            +                        M     +  T T N +   H+   +K+ +F+   
Sbjct: 280 LK-----------------------QMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLS 316

Query: 513 --------PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSG 562
                   P   TY+I++   C      KA  L+ EM T GL PN   +  LI      G
Sbjct: 317 EMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREG 376

Query: 563 NVEGALQCRF 572
           NV  +L C  
Sbjct: 377 NV--SLACEI 384



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 112/511 (21%), Positives = 190/511 (37%), Gaps = 114/511 (22%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL---------KNECQRLLDS---GEVE 172
           R G ++   G  K + + G+ P    DG  +  L          NE + LLD     E++
Sbjct: 164 RSGAVEEAFGFKKDMEDYGLVP----DGFTYGALINGLCKSRRSNEAKALLDEMSCAELK 219

Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCV------NKPDVNLAIRYACIV---PRADIL 223
             V +   L +  +     DE F++++  V      NK   +  +R  C +    RA +L
Sbjct: 220 PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLL 279

Query: 224 FCNFVREFGKKRDLV---------------SALRAYDASKKHLSSPNMYICRTIIDVCGI 268
               VR+  +   +                 A R     +    SPN+Y    +I   G+
Sbjct: 280 LKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIH--GL 337

Query: 269 C--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADM 324
           C  G+  K+  + E++ ++ +  N +V+  L++    +   +L  E++  M K+ V+ D+
Sbjct: 338 CQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDL 397

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
             YN L                                +F  S + +V    K++     
Sbjct: 398 YCYNSL--------------------------------IFGLSKVGRVEESTKYFA---- 421

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
               M   G+ PN  T+S LI+     G +E A  L + ML  G +PN      LL++  
Sbjct: 422 ---QMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF 478

Query: 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDG----NTDRISNMEHKDK-QSITNTPNFVPN 499
           ++   ++    F+S  +    V L     G    N     NME   +  S       VP+
Sbjct: 479 KSDDIEKVSSTFKS--MLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPD 536

Query: 500 SH-YSSF--------DKRFSF-----------KPTTTTYNILMKACCT--DYYRVKALMN 537
            H YSS         D+  +F            P    YN L+   C   D    + + N
Sbjct: 537 VHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFN 596

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            +   GL PN +++T LID     G++  A 
Sbjct: 597 SILAKGLVPNCVTYTSLIDGSCKVGDISNAF 627



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 107/244 (43%), Gaps = 14/244 (5%)

Query: 224 FCNFVREFGKKRDLVSA----LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           +   +  + K  DL SA     R  D   K    PN  I   +++      D  K  + +
Sbjct: 435 YSGLIHGYLKNGDLESAEQLVQRMLDTGLK----PNDVIYIDLLESYFKSDDIEKVSSTF 490

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           + +  Q V L+  ++  L++   ++ +++    V   ++K G + D+  Y+ L+   C  
Sbjct: 491 KSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLC-- 548

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
             T   ++ +G +  +  KGV   ++  Y+ ++     +     A  V   +L+ G+ PN
Sbjct: 549 -KTADREKAFGILDEMSKKGV-DPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 606

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +T++SLI+     G +  A +L+ EML  G  P++   ++L   C  A   ++A  L  
Sbjct: 607 CVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIE 666

Query: 458 SWTL 461
              L
Sbjct: 667 EMFL 670



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 6/141 (4%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +++V++SL++      D +    +   M K GV  ++  YN L+   C +G+   A+ ++
Sbjct: 536 DVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVF 595

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             +    AKG++  +  TY++++           A  +  +ML+ G+TP+   +S L   
Sbjct: 596 NSIL---AKGLVP-NCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTG 651

Query: 408 CANAGLVEQAMHLFEEMLQAG 428
           C++AG +EQAM L EEM   G
Sbjct: 652 CSSAGDLEQAMFLIEEMFLRG 672



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 72/193 (37%), Gaps = 51/193 (26%)

Query: 381 MAL--KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           MAL  KV+E M+ AG++P+  T+S+LI A       + A  +  EM + GC  N+   N+
Sbjct: 98  MALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNV 157

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           L+     +   + AF   +            EDY                        VP
Sbjct: 158 LIAGLCRSGAVEEAFGFKKDM----------EDY----------------------GLVP 185

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILID 556
           +                 TY  L+   C        KAL++EM    L PN + +  LID
Sbjct: 186 DGF---------------TYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLID 230

Query: 557 ACGGSGNVEGALQ 569
                GN + A +
Sbjct: 231 GFMREGNADEAFK 243


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 149/344 (43%), Gaps = 30/344 (8%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           DIL   ++RE G  +D   +L  +     +  +P++Y C  I+      G+ +   +  +
Sbjct: 127 DILIRVYLRE-GMIQD---SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLK 182

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAG 338
           ++  + +  ++  FN L+NV   +  F    Y  + M+K G    + +YN +L   C  G
Sbjct: 183 EMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKG 242

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A E+   + H+++KGV   DV TY+ ++     +        +  DM    + PN 
Sbjct: 243 RFKAAIEL---LDHMKSKGV-DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNE 298

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-- 456
           +T+++LIN  +N G V  A  L  EML  G  PN    N L+   +    F  A ++F  
Sbjct: 299 VTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYM 358

Query: 457 -RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
             +  L+ ++V+ G   DG               +     F     +    KR       
Sbjct: 359 MEAKGLTPSEVSYGVLLDG---------------LCKNAEFDLARGFYMRMKRNGVCVGR 403

Query: 516 TTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
            TY  ++   C + +  +A  L+NEM   G+ P+ ++++ LI+ 
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALING 447



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 145/321 (45%), Gaps = 22/321 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P++     +I+V    G + KS  + + +        I  +N++++      +F   +E+
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
             +M+  GV AD+ +YN+L+   C +        +  +++    K ++  +  TY+T++ 
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMR----KRMIHPNEVTYNTLIN 306

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F++     +A ++  +MLS G++PN +T+++LI+   + G  ++A+ +F  M   G  P
Sbjct: 307 GFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTP 366

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE-DYDGNTDRISNMEHKDKQSI 490
           +     +LL    +  +FD A   +    + +  V +G   Y G  D +      D+  +
Sbjct: 367 SEVSYGVLLDGLCKNAEFDLARGFY--MRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVV 424

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNH 548
                 +        D      P   TY+ L+   C    +   K ++  +  VGLSPN 
Sbjct: 425 -----LLNEMSKDGID------PDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNG 473

Query: 549 ISWTILIDACGGSGNVEGALQ 569
           I ++ LI  C   G ++ A++
Sbjct: 474 IIYSTLIYNCCRMGCLKEAIR 494



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 108/251 (43%), Gaps = 10/251 (3%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           I+P      C  +  +G   + + A   +D   K    P  +   +++   G+C  G   
Sbjct: 539 ILPNTVSFDC-LINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLK--GLCKGGHLR 595

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           ++    + L +    ++  ++N+L+     + +L   + ++  M +  ++ D  +Y  L+
Sbjct: 596 EAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLI 655

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C  G TV+A       K  EA+G +  +   Y+  V     A  W+  +  +E M +
Sbjct: 656 SGLCRKGKTVIAILF---AKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDN 712

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G TP+ +T +++I+  +  G +E+   L  EM      PN    NILL    +      
Sbjct: 713 LGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVST 772

Query: 452 AFRLFRSWTLS 462
           +F L+RS  L+
Sbjct: 773 SFLLYRSIILN 783



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 139/354 (39%), Gaps = 43/354 (12%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305
           +K +  PN     T+I+     G  + +  +  ++ S  ++ N   FN+L++  ++  + 
Sbjct: 290 RKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 349

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           K  L+++  M+  G+     SY +LL   C      LA+  Y  +K     GV  +   T
Sbjct: 350 KEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR---NGVC-VGRIT 405

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+ ++       +   A+ +  +M   G+ P+ +T+S+LIN     G  + A  +   + 
Sbjct: 406 YTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIY 465

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI------ 479
           + G  PN    + L+  C        A R++ +  L       G   D  T  +      
Sbjct: 466 RVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILE------GHTRDHFTFNVLVTSLC 519

Query: 480 ---SNMEHKDKQSITNTPNFVPNS------------------HYSSFDK--RFSFKPTTT 516
                 E ++      +   +PN+                   +S FD+  +    PT  
Sbjct: 520 KAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFF 579

Query: 517 TYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           TY  L+K  C   +  +A   +  +  V  + + + +  L+ A   SGN+  A+
Sbjct: 580 TYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAV 633



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 103/269 (38%), Gaps = 57/269 (21%)

Query: 305  LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            L+  L++ K     GV  D  ++N+L+  CC  G    A ++   VK + + G+  LD  
Sbjct: 805  LEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDL---VKVMTSLGI-SLDKD 860

Query: 365  TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            T   +V V      +Q +  V  +M   G++P +  +  LIN     G ++ A  + EEM
Sbjct: 861  TCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEM 920

Query: 425  LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
            +     P +   + +++A  +  + D A  L R                           
Sbjct: 921  IAHKICPPNVAESAMVRALAKCGKADEATLLLR--------------------------- 953

Query: 485  KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV-- 542
                                F  +    PT  ++  LM  CC +   ++AL  E+R V  
Sbjct: 954  --------------------FMLKMKLVPTIASFTTLMHLCCKNGNVIEAL--ELRVVMS 991

Query: 543  --GLSPNHISWTILIDACGGSGNVEGALQ 569
              GL  + +S+ +LI      G++  A +
Sbjct: 992  NCGLKLDLVSYNVLITGLCAKGDMALAFE 1020



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 315  MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
            M K+ ++  +AS+  L+  CC  GN + A E+    + + +   LKLD+ +Y+ ++    
Sbjct: 955  MLKMKLVPTIASFTTLMHLCCKNGNVIEALEL----RVVMSNCGLKLDLVSYNVLITGLC 1010

Query: 375  DAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
                  +A ++ E+M   G   N  T+ +LI  
Sbjct: 1011 AKGDMALAFELYEEMKGDGFLANATTYKALIRG 1043


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 90/441 (20%), Positives = 174/441 (39%), Gaps = 71/441 (16%)

Query: 147 LELFDGSGFKLLKNECQRLLD-----SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201
             L   S F++  + C  LLD     +  V ++    E+LE +  P K       I + C
Sbjct: 176 FRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILE-YGFPPKVQYYNILINKFC 234

Query: 202 VNKP--DVNL---AIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM 256
                 D  L    IR   + P   + F   +    K R+L    R     +++   P++
Sbjct: 235 KEGSIRDAKLIFNEIRKRGLRP-TTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDV 293

Query: 257 YICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           +    +I   G+C  G    +  ++++++ + +  N   F +L++    +  +   +  Y
Sbjct: 294 FTYSVLIH--GLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTY 351

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M  +GV  D+  YN LL   C  G+   A+++  E+K +     +K D  TY+T++  
Sbjct: 352 HQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVG----MKPDKITYTTLIDG 407

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +      + A+++++ M   GV  + + +++LI+     G V  A     EM++AG +P+
Sbjct: 408 YCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPD 467

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
                +++    +       F+L +   +                               
Sbjct: 468 DATYTMVIDGYCKKGNVKMGFKLLKEMQI------------------------------- 496

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHIS 550
                 N H          KP   TYN+LM   C       A  L+  M  +G++P+ I+
Sbjct: 497 ------NGH----------KPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDIT 540

Query: 551 WTILIDACGGSGNVEGALQCR 571
           + IL++    +G  E  L+ R
Sbjct: 541 YNILLEGHCKNGKAEDLLKLR 561



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 124/273 (45%), Gaps = 19/273 (6%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           I F   +    + R + SA+  Y         P++ +  T+++  G+C  GD  K+R + 
Sbjct: 329 ITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLN--GLCKVGDVNKARKLV 386

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           ++++   +  +   + +L++      DL+  +E+ K M + GV+ D  ++  L+   C  
Sbjct: 387 DEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRD 446

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A+    E+  +EA   +K D  TY+ ++  +      +M  K+ ++M   G  P 
Sbjct: 447 GRVRDAERTLREM--VEAG--MKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPG 502

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            IT++ L+N     G ++ A  L E ML  G  P+    NILL+     C+  +A  L +
Sbjct: 503 VITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEG---HCKNGKAEDLLK 559

Query: 458 SWTLSKTQVALGEDYDGNTDRIS--NMEHKDKQ 488
                + +  L  DY   T  +S  N   KD+Q
Sbjct: 560 ----LRNEKGLIVDYAYYTSLVSEYNKSLKDRQ 588


>gi|302757297|ref|XP_002962072.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
 gi|300170731|gb|EFJ37332.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
          Length = 413

 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 6/236 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +C  V  F +      AL AY             I R ++ VC   G ++ +   ++++ 
Sbjct: 136 YCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQGRWLVALTFFKEML 195

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
                  I  +N LM     A   +  L++   M+  GV  D  + N +L     A    
Sbjct: 196 ESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLIAAREFD 255

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A   +  VK       +KLD   Y+ I+     +K W+ AL + ++M   G+ PN +T+
Sbjct: 256 RAMLFFHSVK----SSGMKLDREVYNVILVACQKSKNWEAALSLVQEMEQTGIAPNEVTF 311

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             L+ AC NA  VE A+ L+E M Q  C PN+     L++AC +   + +A  ++R
Sbjct: 312 GPLLVACENAKQVEVALRLYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNIYR 367



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 148/357 (41%), Gaps = 52/357 (14%)

Query: 232 GKKRDLVSALRAYDASKK--HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           G++R     L      K+  H ++ N  I   + D     GD   + AI+E ++   V  
Sbjct: 6   GRRRTAFKVLEWLSDRKRGIHANAYNSLITGLMKD-----GDEADAIAIFERMKQDRVAP 60

Query: 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA----DMASYNILLKACCLAGNTVLAQE 345
            +Y + ++M   AH ++     ++   +L V      D+A YN +L A    G     + 
Sbjct: 61  TLYTYTAVMRALAH-VQGWESAHRMFSELVVHGSLKPDVAMYNTMLAA---YGRGHKLER 116

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +    + +  +G ++ +V TY  +V  F       +AL     M S G+      +  L+
Sbjct: 117 VLQTWERMRKEGCVE-NVGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLV 175

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
             CA  G    A+  F+EML++GC+P     N+L++A  +A                K +
Sbjct: 176 CVCATQGRWLVALTFFKEMLESGCKPTIVTYNVLMRALGKA---------------GKWE 220

Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS--FDKRFSF---------KPT 514
           + L        D +  M+         T N V N   ++  FD+   F         K  
Sbjct: 221 IVL--------DLLPRMKASGVAPDFYTVNAVLNGLIAAREFDRAMLFFHSVKSSGMKLD 272

Query: 515 TTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              YN+++ AC    ++    +L+ EM   G++PN +++  L+ AC  +  VE AL+
Sbjct: 273 REVYNVILVACQKSKNWEAALSLVQEMEQTGIAPNEVTFGPLLVACENAKQVEVALR 329



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 88/212 (41%), Gaps = 36/212 (16%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P +     ++   G  G +     +   +++  V  + Y  N+++N  + A +    +  
Sbjct: 201 PTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLIAAREFDRAMLF 260

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           + +++  G+  D   YN++L AC  + N   A  +   V+ +E  G+   +V T+  ++ 
Sbjct: 261 FHSVKSSGMKLDREVYNVILVACQKSKNWEAALSL---VQEMEQTGIAPNEV-TFGPLLV 316

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE--------- 422
              +AK  ++AL++ E M      PNT   +SLI AC    + +QA +++          
Sbjct: 317 ACENAKQVEVALRLYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNIYRVSSPNVYVY 376

Query: 423 ---------------------EMLQAGCEPNS 433
                                 M++ GC+ N+
Sbjct: 377 NALIDAYCRSQKYHLAKKVDRRMIEEGCQRNN 408


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 163/396 (41%), Gaps = 53/396 (13%)

Query: 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263
           KPD+     Y C++             + K +++  A       KK   + N Y+C  I+
Sbjct: 404 KPDIQ---TYNCLI-----------EGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIV 449

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVM 321
           +    CGD  ++  +++++ S  +  NI ++ +++     + +F   +++   M+  G+ 
Sbjct: 450 NGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLS 509

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            D+  YN ++   C AG     +E    +  + AKG LK +V+TY   +  +  A   Q 
Sbjct: 510 PDVFCYNTVIIGFCKAGKM---EEGKSYLVEMIAKG-LKPNVYTYGAFIHGYCRAGEMQA 565

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A +   +ML +G+ PN +  + LI+     G   +A   F  ML  G  P+ Q  ++L+ 
Sbjct: 566 AERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIH 625

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM-----------EHKDKQSI 490
              +  +   A  +F S  L K  V    D    T  ISN+            H D    
Sbjct: 626 GLSKNGKLQEAMGVF-SELLDKGLVP---DVFTYTSLISNLCKEGDLKAAFELHDDMCKK 681

Query: 491 TNTPNFVPNS----------HYSSFDKRFSFKP------TTTTYNILMKACCTDYYRVKA 534
              PN V  +            +   + F   P       + TY+ ++   C      +A
Sbjct: 682 GINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEA 741

Query: 535 --LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             L + M+ VG+ P+   +  LID C  +GN E AL
Sbjct: 742 FQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKAL 777



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 148/352 (42%), Gaps = 66/352 (18%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
           F+  + +  ++ +A R++        +PN  IC  +ID  G C D   ++A  +      
Sbjct: 553 FIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLID--GYCKDGNTTKAFAK------ 604

Query: 287 VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
                                    ++ M   GV+ D+ ++++L+    L+ N  L QE 
Sbjct: 605 -------------------------FRCMLDQGVLPDVQTHSVLIHG--LSKNGKL-QEA 636

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
            G    L  KG++  DVFTY++++         + A ++ +DM   G+ PN +T+++LIN
Sbjct: 637 MGVFSELLDKGLVP-DVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALIN 695

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL----- 461
                G + +A  LF+ + + G   NS   + ++    ++     AF+LF    L     
Sbjct: 696 GLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPP 755

Query: 462 -SKTQVAL--GEDYDGNTDR-ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
            S    AL  G    GNT++ +S      ++ I +TP F      +  D  F        
Sbjct: 756 DSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAF-----NALIDGFFKLGKLIEA 810

Query: 518 YNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           Y                L+ +M    ++PNH+++TILI+     GN++ A Q
Sbjct: 811 YQ---------------LVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQ 847



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 13/238 (5%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           + + +    K+ DL +A   +D   K   +PN+     +I+  G+C  G+  K+R +++ 
Sbjct: 655 YTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALIN--GLCKLGEIAKARELFDG 712

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  N   +++++     + +L    +++  M+ +GV  D   Y  L+  CC AGN
Sbjct: 713 IPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGN 772

Query: 340 TVLAQEIY-GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           T  A  ++ G V+    +G+     F  + I   F   K  + A ++ EDM+   +TPN 
Sbjct: 773 TEKALSLFLGMVE----EGIASTPAFN-ALIDGFFKLGKLIE-AYQLVEDMVDNHITPNH 826

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +T++ LI      G +++A  LF EM +    PN      LL       +    F LF
Sbjct: 827 VTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLF 884



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 53/319 (16%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++Y    +I+     G   + + +  D+  +    N+  ++ ++     A D+   LE+
Sbjct: 230 PDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALEL 289

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            ++M   G++ D   Y  L+   C    +   + +  E+  +     LK D   Y+ ++ 
Sbjct: 290 KRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMG----LKPDHVAYTALIN 345

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F        A +VKE+M +  +  NT T+ +LI+     G +E+A  LF EM   G +P
Sbjct: 346 GFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKP 405

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           + Q  N L++   +    ++A+ L                          +E K +    
Sbjct: 406 DIQTYNCLIEGYYKVQNMEKAYELL-------------------------IEIKKE---- 436

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC-CTDYYRVKALMNEMRTVGLSPNHIS 550
              N   N++                  I+   C C D  R   L  EM + GL PN + 
Sbjct: 437 ---NLTANAYMCG--------------AIVNGLCHCGDLTRANELFQEMISWGLKPNIVI 479

Query: 551 WTILIDACGGSGNVEGALQ 569
           +T ++      G  E A++
Sbjct: 480 YTTIVKGLVKEGRFEEAIK 498



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 46/192 (23%)

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           ++  KV + ML A + P+  T+++LINA    G VE+  H+  +M + GC PN    +++
Sbjct: 215 ELFWKVYKGMLGA-IVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVV 273

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
           +     A   D A  L                               K+S+ N      N
Sbjct: 274 IAGLCRAGDVDEALEL-------------------------------KRSMANKGLLPDN 302

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
             Y++    F  +  +T                K++++EM T+GL P+H+++T LI+   
Sbjct: 303 YIYATLIDGFCRQKRST--------------EGKSMLDEMYTMGLKPDHVAYTALINGFV 348

Query: 560 GSGNVEGALQCR 571
              ++ GA Q +
Sbjct: 349 KQSDIGGAFQVK 360



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/321 (19%), Positives = 136/321 (42%), Gaps = 24/321 (7%)

Query: 254 PNMYICRTIIDVCGICGDY--MKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P+ YI  T+ID  G C      + +++ +++ +  +  +   + +L+N  V   D+    
Sbjct: 300 PDNYIYATLID--GFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAF 357

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V + M    +  +  +Y  L+   C  G+   A++++ E+  +     +K D+ TY+ +
Sbjct: 358 QVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMG----IKPDIQTYNCL 413

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           ++ +   +  + A ++  ++    +T N     +++N   + G + +A  LF+EM+  G 
Sbjct: 414 IEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGL 473

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +PN      +++  V+  +F+ A ++     + K Q    + +  NT  I   +    + 
Sbjct: 474 KPNIVIYTTIVKGLVKEGRFEEAIKIL---GVMKDQGLSPDVFCYNTVIIGFCKAGKMEE 530

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN 547
                     S+      +   KP   TY   +   C   +    +    EM   G++PN
Sbjct: 531 --------GKSYLVEMIAK-GLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPN 581

Query: 548 HISWTILIDACGGSGNVEGAL 568
            +  T LID     GN   A 
Sbjct: 582 DVICTDLIDGYCKDGNTTKAF 602



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 6/195 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G  +++  + ED+   ++T N   +  L+  +    ++K   +++  MQK  VM ++ +Y
Sbjct: 805 GKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTY 864

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             LL      G      E++     + A+G+ K D   +S +V        W  ALK+ +
Sbjct: 865 TSLLHGYNRIGRR---SEMFSLFDEMVARGI-KPDDLAWSVMVDAHLKEGNWIKALKLVD 920

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           DMLS GV      ++ LI+A      + + + + +E+ + G + +   C  L+     A 
Sbjct: 921 DMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAG 980

Query: 448 QFDRAFRLFRSWTLS 462
           + D A R+  S   S
Sbjct: 981 RTDEALRVLESMVRS 995



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 100/246 (40%), Gaps = 25/246 (10%)

Query: 333 ACC-------LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           ACC       L GN V   E++ +V +    G +  DV+TY+ ++  +      +    V
Sbjct: 199 ACCNSLSKDLLKGNRV---ELFWKV-YKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHV 254

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             DM   G  PN +T+S +I     AG V++A+ L   M   G  P++     L+     
Sbjct: 255 LFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDG--- 311

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
            C+  R+    +S       + L  D+   T  I+      KQS       V    ++  
Sbjct: 312 FCRQKRSTE-GKSMLDEMYTMGLKPDHVAYTALINGFV---KQSDIGGAFQVKEEMFAR- 366

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
                 K  T TY  L+   C   D  + + L +EM  +G+ P+  ++  LI+      N
Sbjct: 367 ----KIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQN 422

Query: 564 VEGALQ 569
           +E A +
Sbjct: 423 MEKAYE 428


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 149/344 (43%), Gaps = 30/344 (8%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           DIL   ++RE G  +D   +L  +     +  +P++Y C  I+      G+ +   +  +
Sbjct: 127 DILIRVYLRE-GMIQD---SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLK 182

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAG 338
           ++  + +  ++  FN L+NV   +  F    Y  + M+K G    + +YN +L   C  G
Sbjct: 183 EMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKG 242

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A E+   + H+++KGV   DV TY+ ++     +        +  DM    + PN 
Sbjct: 243 RFKAAIEL---LDHMKSKGV-DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNE 298

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-- 456
           +T+++LIN  +N G V  A  L  EML  G  PN    N L+   +    F  A ++F  
Sbjct: 299 VTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYM 358

Query: 457 -RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
             +  L+ ++V+ G   DG               +     F     +    KR       
Sbjct: 359 MEAKGLTPSEVSYGVLLDG---------------LCKNAEFDLARGFYMRMKRNGVCVGR 403

Query: 516 TTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
            TY  ++   C + +  +A  L+NEM   G+ P+ ++++ LI+ 
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALING 447



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 145/321 (45%), Gaps = 22/321 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P++     +I+V    G + KS  + + +        I  +N++++      +F   +E+
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
             +M+  GV AD+ +YN+L+   C +        +  +++    K ++  +  TY+T++ 
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMR----KRMIHPNEVTYNTLIN 306

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F++     +A ++  +MLS G++PN +T+++LI+   + G  ++A+ +F  M   G  P
Sbjct: 307 GFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTP 366

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE-DYDGNTDRISNMEHKDKQSI 490
           +     +LL    +  +FD A   +    + +  V +G   Y G  D +      D+  +
Sbjct: 367 SEVSYGVLLDGLCKNAEFDLARGFY--MRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVV 424

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNH 548
                 +        D      P   TY+ L+   C    +   K ++  +  VGLSPN 
Sbjct: 425 -----LLNEMSKDGID------PDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNG 473

Query: 549 ISWTILIDACGGSGNVEGALQ 569
           I ++ LI  C   G ++ A++
Sbjct: 474 IIYSTLIYNCCRMGCLKEAIR 494



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 108/251 (43%), Gaps = 10/251 (3%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           I+P      C  +  +G   + + A   +D   K    P  +   +++   G+C  G   
Sbjct: 539 ILPNTVSFDC-LINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLK--GLCKGGHLR 595

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           ++    + L +    ++  ++N+L+     + +L   + ++  M +  ++ D  +Y  L+
Sbjct: 596 EAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLI 655

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C  G TV+A       K  EA+G +  +   Y+  V     A  W+  +  +E M +
Sbjct: 656 SGLCRKGKTVIAILF---AKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDN 712

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G TP+ +T +++I+  +  G +E+   L  EM      PN    NILL    +      
Sbjct: 713 LGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVST 772

Query: 452 AFRLFRSWTLS 462
           +F L+RS  L+
Sbjct: 773 SFLLYRSIILN 783



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 139/354 (39%), Gaps = 43/354 (12%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305
           +K +  PN     T+I+     G  + +  +  ++ S  ++ N   FN+L++  ++  + 
Sbjct: 290 RKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 349

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           K  L+++  M+  G+     SY +LL   C      LA+  Y  +K     GV  +   T
Sbjct: 350 KEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR---NGVC-VGRIT 405

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+ ++       +   A+ +  +M   G+ P+ +T+S+LIN     G  + A  +   + 
Sbjct: 406 YTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIY 465

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI------ 479
           + G  PN    + L+  C        A R++ +  L       G   D  T  +      
Sbjct: 466 RVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILE------GHTRDHFTFNVLVTSLC 519

Query: 480 ---SNMEHKDKQSITNTPNFVPNS------------------HYSSFDK--RFSFKPTTT 516
                 E ++      +   +PN+                   +S FD+  +    PT  
Sbjct: 520 KAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFF 579

Query: 517 TYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           TY  L+K  C   +  +A   +  +  V  + + + +  L+ A   SGN+  A+
Sbjct: 580 TYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAV 633



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 103/269 (38%), Gaps = 57/269 (21%)

Query: 305  LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            L+  L++ K     GV  D  ++N+L+  CC  G    A ++   VK + + G+  LD  
Sbjct: 805  LEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDL---VKVMTSLGI-SLDKD 860

Query: 365  TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            T   +V V      +Q +  V  +M   G++P +  +  LIN     G ++ A  + EEM
Sbjct: 861  TCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEM 920

Query: 425  LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
            +     P +   + +++A  +  + D A  L R                           
Sbjct: 921  IAHKICPPNVAESAMVRALAKCGKADEATLLLR--------------------------- 953

Query: 485  KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV-- 542
                                F  +    PT  ++  LM  CC +   ++AL  E+R V  
Sbjct: 954  --------------------FMLKMKLVPTIASFTTLMHLCCKNGNVIEAL--ELRVVMS 991

Query: 543  --GLSPNHISWTILIDACGGSGNVEGALQ 569
              GL  + +S+ +LI      G++  A +
Sbjct: 992  NCGLKLDLVSYNVLITGLCAKGDMALAFE 1020



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 315  MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
            M K+ ++  +AS+  L+  CC  GN + A E+    + + +   LKLD+ +Y+ ++    
Sbjct: 955  MLKMKLVPTIASFTTLMHLCCKNGNVIEALEL----RVVMSNCGLKLDLVSYNVLITGLC 1010

Query: 375  DAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
                  +A ++ E+M   G   N  T+ +LI  
Sbjct: 1011 AKGDMALAFELYEEMKGDGFLANATTYKALIRG 1043


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 117/273 (42%), Gaps = 41/273 (15%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  F K  ++  A+R  +  +K    P+    R II+   + GD  ++  I + +R   
Sbjct: 520 LIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSG 579

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
               +  +N+L++  +  + ++  + V   M   G+  +  +Y I+++     G+   A 
Sbjct: 580 CAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAF 639

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA------------ 392
           E + ++K    +G LKLDV+ Y T+++    +   Q AL V  +M +             
Sbjct: 640 EYFTKIK----EGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNIL 695

Query: 393 -----------------------GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
                                  GV PN  T++S INAC  AG +++A  + EEM   G 
Sbjct: 696 IDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGL 755

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           +PN +    L++   +A   DRA + F    L+
Sbjct: 756 KPNLKTYTTLIKGWAKASLPDRALKSFEEMKLA 788



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 140/339 (41%), Gaps = 55/339 (16%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   K+ AI +++ S  +  N   ++ L++  ++ HD      +++ M K G+  D A Y
Sbjct: 458 GKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIY 517

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N+L++A C  GN   A  I  +++    K  ++     +  I++ FA A   + AL + +
Sbjct: 518 NLLIEAFCKMGNMDRAIRILEKMQ----KERMQPSNRAFRPIIEGFAVAGDMKRALNILD 573

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            M  +G  P  +T+++LI+       VE+A+ +  +M  AG  PN     I+++      
Sbjct: 574 LMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANG 633

Query: 448 QFDRAFRLFRSW-------------TL-------SKTQVALGEDYDGNTDRISNMEHKDK 487
              +AF  F                TL        + Q AL    + +T +I+       
Sbjct: 634 DIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIAR------ 687

Query: 488 QSITNTPNFVPNSHYSSFDKRF---------------SFKPTTTTYNILMKACCT--DYY 530
               NT  FV N     + +R                   P   TY   + ACC   D  
Sbjct: 688 ----NT--FVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQ 741

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           R + ++ EM  VGL PN  ++T LI     +   + AL+
Sbjct: 742 RAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALK 780



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/381 (19%), Positives = 144/381 (37%), Gaps = 104/381 (27%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327
           GD   +RA +E++R++ +  N +VF SL++  A   D++  L   + M+  G+   + +Y
Sbjct: 283 GDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGVLSCVEEMKAEGIELTIVTY 342

Query: 328 NILL-----------------------------------KACCLAGNTVLAQEIYGEVKH 352
           +I++                                    A C +GN   A+E+   V+ 
Sbjct: 343 SIIIAGFAKINDAQSADNLFKEAKAKLGDLNGIIYSNIIHAHCQSGNMDRAEEL---VRE 399

Query: 353 LEAKGV----------------------------------LKLDVFTYSTIVKVFADAKW 378
           +E  G+                                      + +Y  ++ ++     
Sbjct: 400 MEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYIKIGK 459

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A+ + ++M S G+  N  T+S LI+   +      A  +FEEML++G +P+    N+
Sbjct: 460 VTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNL 519

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQ--------VALGEDYDGNTDRISNMEHKDKQSI 490
           L++A  +    DRA R+       + Q        +  G    G+  R  N+        
Sbjct: 520 LIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNI-------- 571

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNH 548
                           +R    PT  TYN L+          R  +++N+M   G++PN 
Sbjct: 572 ------------LDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNE 619

Query: 549 ISWTILIDACGGSGNVEGALQ 569
            ++TI++     +G++  A +
Sbjct: 620 HTYTIIMRGYAANGDIGKAFE 640



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 92/190 (48%), Gaps = 6/190 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +PN +    I+      GD  K+   +  ++   + L++Y++ +L+     +  ++  L 
Sbjct: 616 TPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALA 675

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M    +  +   YNIL+      G+   A ++   +K ++  GV   ++ TY++ +
Sbjct: 676 VTREMSTQKIARNTFVYNILIDGWARRGDVWEAADL---MKQMKEDGVPP-NIHTYTSYI 731

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A   Q A KV E+M   G+ PN  T+++LI   A A L ++A+  FEEM  AG +
Sbjct: 732 NACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLK 791

Query: 431 PNSQCCNILL 440
           P+    + L+
Sbjct: 792 PDEAAYHCLV 801



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 6/182 (3%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           +R +    D+  A   +   K+     ++YI  T++  C   G    + A+  ++ +Q +
Sbjct: 626 MRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKI 685

Query: 288 TLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             N +V+N L++  A   D+    ++ K M++ GV  ++ +Y   + ACC AG+   AQ+
Sbjct: 686 ARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQK 745

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +  E+  +  K  LK    TY+T++K +A A     ALK  E+M  AG+ P+   +  L+
Sbjct: 746 VIEEMADVGLKPNLK----TYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLV 801

Query: 406 NA 407
            +
Sbjct: 802 TS 803


>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 109/238 (45%), Gaps = 13/238 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  +    K   L  AL  Y   ++   SP+ +    II+  G  G    +  ++ +
Sbjct: 450 VTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCE 509

Query: 282 LRSQNVTLNIYVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q    N+  +N +  +   A +    LE+Y++MQ  G   D  +Y+I+++     G+
Sbjct: 510 MVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGH 569

Query: 340 TVLAQEIYGEVKH---LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
              A+ I+ E+K    +  + V  L V  +  +  V    +W+Q        ML+AG+ P
Sbjct: 570 LEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQA-------MLNAGLCP 622

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-CQFDRAF 453
           N  T +SL++A      +  A +L + ML+ G +P+ Q   +LL  C EA   FD  F
Sbjct: 623 NVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLLLSCCTEARSSFDMGF 680



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 127/297 (42%), Gaps = 38/297 (12%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           T++ + G    +     +  ++       N+  +N L++    A+ L   + V+  MQ+ 
Sbjct: 384 TMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEA 443

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  +Y  L+     AG   +A  +Y +++       L  D FTYS I+     A  
Sbjct: 444 GCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAH----LSPDTFTYSVIINCLGKAGH 499

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A K+  +M+  G  PN +T++ +I   A A     A+ L+ +M  AG +P+    +I
Sbjct: 500 LTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSI 559

Query: 439 LLQACVEACQFDRAFRLF-----RSWTLSKTQVALGEDYDGNTDRISNMEHKDK--QSIT 491
           +++        + A  +F     ++W   +    L  D  G   ++ N+E   +  Q++ 
Sbjct: 560 VMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWG---KVGNVEKSWEWYQAML 616

Query: 492 NT---PNFVP--NSHYSSFDK---------------RFSFKPTTTTYNILMKACCTD 528
           N    PN VP  NS  S+F +               R   +P+  TY +L+ +CCT+
Sbjct: 617 NAGLCPN-VPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLLL-SCCTE 671



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 36/228 (15%)

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           L+ +   K D  TY+T+V +   A+ +    K+  +M+  G  PN +T++ LI++   A 
Sbjct: 369 LKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRAN 428

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            + +A+ +F+ M +AGC+P+      L+    +A   D A  +++               
Sbjct: 429 YLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQ--------------- 473

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPN-----SHYSSFDKRF------SFKPTTTTYNIL 521
                    M+       T T + + N      H +S  K F         P   TYNI+
Sbjct: 474 --------KMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIM 525

Query: 522 --MKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             ++A   +Y     L  +M+  G  P+ ++++I+++  G  G++E A
Sbjct: 526 IALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEA 573


>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 482

 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 149/329 (45%), Gaps = 24/329 (7%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           FC  +R++ + + +  A+ A++  +K+   PN+     ++       +  K++ I+E++R
Sbjct: 136 FCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEIFENMR 195

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            +  T +   ++ L+       +L    EV++ M   G + D+ +Y+I++   C AG   
Sbjct: 196 DR-FTPDSKTYSILLEGWGKEPNLPKAREVFREMVDAGSLPDIVTYSIMVDILCKAGRV- 253

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
              E  G V+ ++   + K   F YS +V  +      + A+    +M  +G+  +   +
Sbjct: 254 --DEALGIVRSMDP-SICKPTTFIYSVLVHTYGTETRLEEAVDTFLEMERSGMKADVAVF 310

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           +SLI A      ++    + +EM   G  PNS+ CNI+L+  ++  + D AF +FR    
Sbjct: 311 NSLIGAFCKTNRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIDRGEKDEAFDVFR---- 366

Query: 462 SKTQVALGEDYDGNTDRISNM-EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
            K       D D  T  I    E K+ ++            +    K+  F P+  T+++
Sbjct: 367 -KMIKVCEPDADTYTMMIKMFCEKKEMETADKV--------WKYMRKKGVF-PSMHTFSV 416

Query: 521 LMKACCTDYYRVKA--LMNEMRTVGLSPN 547
           L+   C +    KA  L+ EM  +G+ P+
Sbjct: 417 LINGLCEEPNTQKACVLLEEMIEMGIRPS 445


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 122/259 (47%), Gaps = 16/259 (6%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           +P  D +F   +R + K   L  A+ A+   ++   SPN+    T+ID+    G    + 
Sbjct: 291 IPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAV 350

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL-------GVMADMASYNI 329
           + +  + S+ ++ +I  F SL+    H L  T+  +K ++KL       G+  +    N 
Sbjct: 351 SHFSQMVSEGLSPDIITFTSLI----HGL-CTIGEWKKVEKLSFEMINRGIHPNAIFLNT 405

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           ++ + C  G  + A + + ++ H+   GV K DV +Y+ ++  +        ++K+   M
Sbjct: 406 IMDSLCKEGRVLEAHDFFDQIIHV---GV-KPDVVSYTILIDGYCLDGKMDESIKLLGRM 461

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
           +S G+ P+ +T+S+L+N     G V+ A+ L+ EM     +PN+   NI+L     A + 
Sbjct: 462 VSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRV 521

Query: 450 DRAFRLFRSWTLSKTQVAL 468
             A   +     S  Q+ +
Sbjct: 522 VAAREFYMKIVDSGIQLGI 540



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 92/476 (19%), Positives = 182/476 (38%), Gaps = 106/476 (22%)

Query: 109 SMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPL-----ELFDG--SGFKLLKNE 161
           ++LS  MV +G+ K   EG +D    +  ++   G  P       + DG      + K E
Sbjct: 138 NVLSYNMVINGLFK---EGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAE 194

Query: 162 C--QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV---NLAIRYACI 216
              Q++ D G++E  V L++ +    L                 +PDV   +L I Y C 
Sbjct: 195 AVLQQMFDKGQLEEAVRLLKKMSGGGL-----------------QPDVVTYSLLIDYYCK 237

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           + R     C   R              +D+  +   +P+ Y  RT++      G  +   
Sbjct: 238 IGR-----CTEARNI------------FDSMVRRGQNPDAYTYRTLLHGYATKGALVDMH 280

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            +   +    + L  +VFN L+   A +  L   +  +  M++ G   ++ +Y  ++   
Sbjct: 281 DLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDIL 340

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C AG     ++       + ++G L  D+ T+++++        W+   K+  +M++ G+
Sbjct: 341 CKAGRV---EDAVSHFSQMVSEG-LSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGI 396

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PN I  ++++++    G V +A   F++++  G +P+     IL+       + D + +
Sbjct: 397 HPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIK 456

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           L          V++G                                          +P 
Sbjct: 457 LLGRM------VSIG-----------------------------------------LRPD 469

Query: 515 TTTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             TY+ L+   C +  RV    AL  EM +  + PN I++ I++     +G V  A
Sbjct: 470 NVTYSALLNGYCKN-GRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAA 524



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 137/327 (41%), Gaps = 48/327 (14%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD---------LKFTLEVYKNMQKLGV---MADMA 325
           ++++L  +  + +++ FN ++ V AH              + ++  M ++GV     D  
Sbjct: 36  LFDELLPRARSASVHAFNRVLTVVAHGDSSSSQRHGAALAVSLFNTMAQVGVNKLATDAC 95

Query: 326 SYNILLKACCLAG--NTVLAQEIYGE--VKHLEAKGVLKL--DVFTYSTIVKVFADAKWW 379
           ++ IL++  C  G  +  L +E  G     H+ A        +V +Y+ ++         
Sbjct: 96  TFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMVINGLFKEGEV 155

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANA----------------GLVEQAMHLFEE 423
             A  +  +ML  G  PN +T++S+I+    A                G +E+A+ L ++
Sbjct: 156 DKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKK 215

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M   G +P+    ++L+    +  +   A  +F S       V  G++ D  T R     
Sbjct: 216 MSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSM------VRRGQNPDAYTYRTLLHG 269

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN--EMRT 541
           +  K ++ +  + +      +   +         +NIL++A   +    KA+    EMR 
Sbjct: 270 YATKGALVDMHDLL------ALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQ 323

Query: 542 VGLSPNHISWTILIDACGGSGNVEGAL 568
            G SPN +++T +ID    +G VE A+
Sbjct: 324 KGFSPNVVTYTTVIDILCKAGRVEDAV 350



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 83/178 (46%), Gaps = 6/178 (3%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A+Y ++ S++V  N   +N +++   +A  +    E Y  +   G+   + +YNI+L   
Sbjct: 491 ALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGL 550

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C       A  ++  ++  E     +L+V T++ ++           A  +   +L +G+
Sbjct: 551 CENSFVDEALRMFQGLRSKE----FQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGL 606

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            P+ I +  +I +    GL+E++  LF  M + GC  NS+  N +++  +E     RA
Sbjct: 607 VPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRA 664


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 133/297 (44%), Gaps = 34/297 (11%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASY 327
           ++ +++ I+ ++  Q V  ++  F+SLM V   N H L   L  +++M+K G++ D   Y
Sbjct: 86  NFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRH-LDQALVYFRDMKKFGLVPDNVIY 144

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            +L+   C  GN + A +I  E+  LE   VL  DV  Y+TI+      K    A K+ +
Sbjct: 145 TVLMHGYCRNGNMLEALKIRDEM--LEQGCVL--DVIAYNTILNGLCKEKMLTDADKLFD 200

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M+  G  P+  T+++LI+     G + +A+ LF  M Q   +P+    N L+    +  
Sbjct: 201 EMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVG 260

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
           + ++A  L                +DG   R     H     + N   +    H S   +
Sbjct: 261 EMEKASEL----------------WDGMISRKIFPNHITYGILINA--YCSVGHVSEAFR 302

Query: 508 RF------SFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILID 556
            +        KPT  T N ++K  C   D  +    +  M   G++P+HIS+  LI+
Sbjct: 303 LWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 107/223 (47%), Gaps = 10/223 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           F + +  F + R L  AL  +   KK    P+  I   ++   G C  G+ +++  I ++
Sbjct: 109 FSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMH--GYCRNGNMLEALKIRDE 166

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q   L++  +N+++N    +   T   +++  M + G + D  ++  L+   C  GN
Sbjct: 167 MLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGN 226

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  ++G +        +K D+  Y+T++  F      + A ++ + M+S  + PN I
Sbjct: 227 MTKALSLFGTMTQRN----IKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHI 282

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           T+  LINA  + G V +A  L++ M++ G +P    CN +++ 
Sbjct: 283 TYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKG 325



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 120/258 (46%), Gaps = 20/258 (7%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M  +G+  D  +YN LL   C   N   A+EI+GE+     +GV+  D+ ++S+++ VF+
Sbjct: 62  MLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLR---QGVVP-DLVSFSSLMAVFS 117

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAGCEPNS 433
             +    AL    DM   G+ P+ + ++ L++  C N  ++E A+ + +EML+ GC  + 
Sbjct: 118 RNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLE-ALKIRDEMLEQGCVLDV 176

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
              N +L    +      A +LF        + AL + Y       + + H   Q    T
Sbjct: 177 IAYNTILNGLCKEKMLTDADKLFDEMV---ERGALPDFY-----TFTTLIHGHCQDGNMT 228

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISW 551
                 S + +  +R + KP    YN L+   C   +  +   L + M +  + PNHI++
Sbjct: 229 KAL---SLFGTMTQR-NIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITY 284

Query: 552 TILIDACGGSGNVEGALQ 569
            ILI+A    G+V  A +
Sbjct: 285 GILINAYCSVGHVSEAFR 302



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 109/271 (40%), Gaps = 33/271 (12%)

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           M +YN L+ A C  G   L +E +  +  +  KG LK  +FTY+ I+        +  A 
Sbjct: 1   MVTYNTLIGAYCREG---LLEEAFEIMNSMADKG-LKPSLFTYNAIINGLCKKGRYARAK 56

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
            +  +ML+ G++P+T T+++L+          +A  +F EML+ G  P+    + L+   
Sbjct: 57  GILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVF 116

Query: 444 VEACQFDRA---FRLFRSWTLSKTQV---ALGEDYDGNTDRISNMEHKDK---------- 487
                 D+A   FR  + + L    V    L   Y  N + +  ++ +D+          
Sbjct: 117 SRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDV 176

Query: 488 ---QSITNTPNFVPNSHYSSFDKRF------SFKPTTTTYNILMKACCTDYYRVKA--LM 536
               +I N          +  DK F         P   T+  L+   C D    KA  L 
Sbjct: 177 IAYNTILN--GLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLF 234

Query: 537 NEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             M    + P+ +++  LID     G +E A
Sbjct: 235 GTMTQRNIKPDIVAYNTLIDGFCKVGEMEKA 265



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 85/209 (40%), Gaps = 49/209 (23%)

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY+T++  +      + A ++   M   G+ P+  T++++IN     G   +A  +  EM
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  P++   N LL   VE+C+ D           S+ +   GE              
Sbjct: 63  LNIGLSPDTTTYNTLL---VESCRRD---------NFSEAKEIFGEML------------ 98

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTV 542
             +Q +                      P   +++ LM     + +  +AL+   +M+  
Sbjct: 99  --RQGVV---------------------PDLVSFSSLMAVFSRNRHLDQALVYFRDMKKF 135

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+++ +T+L+     +GN+  AL+ R
Sbjct: 136 GLVPDNVIYTVLMHGYCRNGNMLEALKIR 164



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 89/178 (50%), Gaps = 10/178 (5%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           K++ L  A + +D   +  + P+ Y   T+I   G C  G+  K+ +++  +  +N+  +
Sbjct: 188 KEKMLTDADKLFDEMVERGALPDFYTFTTLIH--GHCQDGNMTKALSLFGTMTQRNIKPD 245

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           I  +N+L++      +++   E++  M    +  +  +Y IL+ A C  G+   A  ++ 
Sbjct: 246 IVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLW- 304

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
               +  KG+ K  + T +T++K +  +     A +    M++ GV P+ I++++LIN
Sbjct: 305 --DVMIEKGI-KPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 359


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 140/324 (43%), Gaps = 33/324 (10%)

Query: 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVY 312
           +Y    II+  G  G +  S  +   ++ + V+ +I  +N+++N  A    D +  L ++
Sbjct: 169 VYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLF 228

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M+  G+  D+ +YN LL AC   G   L  E     + +   G++  D+ TYS +V+ 
Sbjct: 229 AEMRHEGIQPDVITYNTLLGACAHRG---LGDEAEMVFRTMNESGIVP-DINTYSYLVQT 284

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           F      +   ++  +M   G  P+  +++ L+ A A  G +++AM +F +M  AGC  N
Sbjct: 285 FGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVAN 344

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
           +   ++LL    +  ++D    LF    +S T      D D  T  I             
Sbjct: 345 AATYSVLLNLYGKHGRYDDVRDLFLEMKVSNT------DPDAGTYNIL------------ 386

Query: 493 TPNFVPNSHYSSFDKRF------SFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGL 544
              F    ++      F      + +P   TY  L+ AC     Y   K ++  M   G+
Sbjct: 387 IQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGV 446

Query: 545 SPNHISWTILIDACGGSGNVEGAL 568
            P+  ++T +I+A G +   E AL
Sbjct: 447 VPSSKAYTGVIEAFGQAALYEEAL 470



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 162/375 (43%), Gaps = 34/375 (9%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
           +   +  +G+     ++L   +  K+   SP++    T+I+ C   G D+     ++ ++
Sbjct: 172 YTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEM 231

Query: 283 RSQNVTLNIYVFNSLMNVNAH-DLKFTLE-VYKNMQKLGVMADMASYNILLKACCLAGNT 340
           R + +  ++  +N+L+   AH  L    E V++ M + G++ D+ +Y+ L++     G  
Sbjct: 232 RHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTF---GKL 288

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
              +++   ++ +E  G L  D+ +Y+ +++ +A+    + A+ V   M +AG   N  T
Sbjct: 289 NRLEKVSELLREMECGGNLP-DITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAAT 347

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +S L+N     G  +    LF EM  +  +P++   NIL+Q   E   F     LF    
Sbjct: 348 YSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMA 407

Query: 461 LSKTQVALGEDYDGNTDRISNME-HKDKQSI---TNTPNFVPNSH-YSSFDKRF------ 509
               +  + + Y+G          ++D + I    N    VP+S  Y+   + F      
Sbjct: 408 EENVEPNM-QTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALY 466

Query: 510 -------------SFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTIL 554
                           PT  TYN L+ A      Y   +A+++ M   GL  +  S+  +
Sbjct: 467 EEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGV 526

Query: 555 IDACGGSGNVEGALQ 569
           I+A    G  E A++
Sbjct: 527 IEAFRQGGQYEEAVK 541



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 125/300 (41%), Gaps = 25/300 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           PNM     +I  CG  G Y  ++ I   +  + V  +   +  ++        +   L +
Sbjct: 413 PNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVM 472

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M ++G    + +YN L+ A    G   L +E    +  +   G LK DV +++ +++
Sbjct: 473 FNTMNEVGSNPTVETYNSLIHAFARGG---LYKEAEAILSRMNESG-LKRDVHSFNGVIE 528

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F     ++ A+K   +M  A   PN +T  ++++   +AGLV++    F+E+  +G  P
Sbjct: 529 AFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILP 588

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           +  C  ++L    +  + + A+ L  +     +S     +G+   G+ D  SN +     
Sbjct: 589 SVMCYCMMLALYAKNDRLNDAYNLIDAMITMRVSDIHQVIGQMIKGDFDDESNWQ----- 643

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA--CCTDYYRVKALMNEMRTVGLSP 546
            I        NS       RF        YN L++A  C     R   ++NE    GL P
Sbjct: 644 -IVEYVFDKLNSEGCGLGMRF--------YNALLEALWCMFQRERAARVLNEASKRGLFP 694



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 72/207 (34%), Gaps = 51/207 (24%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDML-SAGVTPNTITWSSLINACANAGLVEQAM 418
           KL +  ++ + K FA    WQ +L++ + M       PN    + +I      GL+++  
Sbjct: 95  KLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCR 154

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478
            +F+EM   G          ++ A     QF  +  L                     +R
Sbjct: 155 EVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGM---------------KQER 199

Query: 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---DYYRVKAL 535
           +S                                P+  TYN ++ AC     D+  +  L
Sbjct: 200 VS--------------------------------PSILTYNTVINACARGGLDWEGLLGL 227

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSG 562
             EMR  G+ P+ I++  L+ AC   G
Sbjct: 228 FAEMRHEGIQPDVITYNTLLGACAHRG 254


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 154/368 (41%), Gaps = 56/368 (15%)

Query: 232 GKKRDLVS--ALRAYDASKKHLSSPNMY-------------ICRTIIDVCGICGDYMKSR 276
           G   DL+S  +L    +   HL    MY             +  TI+ + G C + M S 
Sbjct: 320 GVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTIL-INGYCRNGMMSE 378

Query: 277 A--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           A  I + +  Q   L++  +N+++N       L     ++  M + GV+ D  ++  L+ 
Sbjct: 379 ALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIH 438

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  GN   A  ++G    +  +  +K D+ TY+ ++  F      + A ++  +M+S 
Sbjct: 439 GHCKEGNMGKALSLFG----IMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISR 494

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            + PN I+++ L+N   N G V +A  L++EM++ G +P    CN +++     C     
Sbjct: 495 KIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKG---YC----- 546

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF--- 509
               RS  LSK    LG+        IS     D  +     N      Y   DK F   
Sbjct: 547 ----RSGDLSKADEFLGK-------MISEGVGPDSITYNTLINGFVKGEY--MDKAFFLI 593

Query: 510 ------SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGS 561
                   +P   TYN+++   C      +A  ++ +M   G+ P+  ++T LI+     
Sbjct: 594 NKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQ 653

Query: 562 GNVEGALQ 569
            N++ A +
Sbjct: 654 DNLKEAFR 661



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 139/335 (41%), Gaps = 62/335 (18%)

Query: 273 MKSRAIYEDLRSQNVTLNIY--------VFNSLMNVNAHDLKFTL--------------- 309
           M+ + I+ D+ + N  +N Y         F  + +++   LK TL               
Sbjct: 211 MEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGR 270

Query: 310 -----EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
                 V+  M  +G+  D  +YN LL   C   N + A++I+ ++ H   +GV   D+ 
Sbjct: 271 YVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLH---RGV-SPDLI 326

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           ++S+++ V +       AL    DM ++G+ P+ + ++ LIN     G++ +A+ + ++M
Sbjct: 327 SFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKM 386

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--------LSKTQVALGEDYDGNT 476
           L+ GC  +    N +L    +      A  LF             + T +  G   +GN 
Sbjct: 387 LEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNM 446

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKA 534
            +  ++     Q                     + KP   TYNIL+   C  T+  +   
Sbjct: 447 GKALSLFGIMTQK--------------------NIKPDIVTYNILIDGFCKTTEMEKANE 486

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L NEM +  + PNHIS+ IL++     G V  A +
Sbjct: 487 LWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFR 521



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 124/302 (41%), Gaps = 34/302 (11%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +Y ++    + LN+Y  N ++N     H +        +M++ G+ AD+ +YN L+ A C
Sbjct: 172 VYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYC 231

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G   L  E +  +  +  KG LK  +FTY+ ++        +  A  V  +MLS G++
Sbjct: 232 REG---LLGEAFEVMNSMSGKG-LKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLS 287

Query: 396 PNTITWSS-LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           P+T T+++ L+ +C N   +E A  +F +ML  G  P+    + L+         D+A  
Sbjct: 288 PDTTTYNTLLVESCRNNNFLE-AKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALM 346

Query: 455 LFRSWTLSK------TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
            FR    S           L   Y  N      +E +DK                + D  
Sbjct: 347 YFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKML----------EQGCALD-- 394

Query: 509 FSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
                    YN ++   C         AL +EM   G+ P+  ++T LI      GN+  
Sbjct: 395 ------VVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGK 448

Query: 567 AL 568
           AL
Sbjct: 449 AL 450



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 129/310 (41%), Gaps = 61/310 (19%)

Query: 272 YMKSRAIYED------LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMAD 323
           Y+++R + E       LR +   ++I   NSL+   V    +    EVY  + + G+  +
Sbjct: 125 YVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELN 184

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           + + NI++ A C         ++   +  +E KG+   D+ TY+T++  +        A 
Sbjct: 185 VYTLNIMVNALCKDHKI---DDVKPFLIDMEQKGIFA-DIVTYNTLINAYCREGLLGEAF 240

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           +V   M   G+ P   T++++IN     G   +A  +F EML  G  P++   N LL   
Sbjct: 241 EVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLL--- 297

Query: 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
           VE+C+                      ++    D  S+M H+                  
Sbjct: 298 VESCR--------------------NNNFLEAKDIFSDMLHR------------------ 319

Query: 504 SFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGS 561
                    P   +++ L+     + +  +ALM   +M+T GL P+++ +TILI+    +
Sbjct: 320 ------GVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRN 373

Query: 562 GNVEGALQCR 571
           G +  AL+ R
Sbjct: 374 GMMSEALEIR 383



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 103/249 (41%), Gaps = 44/249 (17%)

Query: 224 FCNF---VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAI 278
           FC F   +    K+ ++  AL  +    +    P++     +ID  G C   +  K+  +
Sbjct: 430 FCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILID--GFCKTTEMEKANEL 487

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK---NMQKLGVMADMASYNILLKACC 335
           + ++ S+ +  N   +  L+N    +L F  E ++    M + G+   + + N ++K  C
Sbjct: 488 WNEMISRKIFPNHISYAILVN-GYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYC 546

Query: 336 LAGNTVLAQEIYGE--------------------------------VKHLEAKGVLKLDV 363
            +G+   A E  G+                                +  +E KG L+ DV
Sbjct: 547 RSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKG-LQPDV 605

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY+ I+  F      Q A  +   M+  G+ P+  T+++LIN   +   +++A    +E
Sbjct: 606 VTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDE 665

Query: 424 MLQAGCEPN 432
           MLQ G  P+
Sbjct: 666 MLQRGFVPD 674



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 84/201 (41%), Gaps = 15/201 (7%)

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
           +D   +  +++ +  A+         + +   G   +    +SL+      G V+ A  +
Sbjct: 113 VDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEV 172

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
           + E+ ++G E N    NI++ A  +  + D      + + +   Q  +  D       I+
Sbjct: 173 YNEIARSGIELNVYTLNIMVNALCKDHKIDDV----KPFLIDMEQKGIFADIVTYNTLIN 228

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNE 538
                 ++ +      V NS           KPT  TYN ++   C    Y R K + NE
Sbjct: 229 ---AYCREGLLGEAFEVMNSMSGK-----GLKPTLFTYNAVINGLCKKGRYVRAKGVFNE 280

Query: 539 MRTVGLSPNHISW-TILIDAC 558
           M ++GLSP+  ++ T+L+++C
Sbjct: 281 MLSIGLSPDTTTYNTLLVESC 301


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 140/324 (43%), Gaps = 56/324 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNAHDLKF-TLE 310
           +PN Y   T+I      G   ++  +++++ ++  V     ++N+L+       K  T  
Sbjct: 178 APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL 237

Query: 311 VYKN-MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +Y++ M + GV   +A+YN+L+ A  + G      E Y  V+ +  KG L  DVFTY+ +
Sbjct: 238 LYRDRMVERGVAMTVATYNLLVHALFMDGR---GTEAYELVEEMGGKG-LAPDVFTYNIL 293

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + AL++ E+M   GV    +T+++LI A +  G V++   LF+E ++ G 
Sbjct: 294 INGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGI 353

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            P+    N L+ +   +   DRAF +            +GE           ME K    
Sbjct: 354 RPDLVLYNALINSHSTSGNIDRAFEI------------MGE-----------MEKK---- 386

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN 547
                                  P   TYN LM+  C        + L++EM   G+ P+
Sbjct: 387 --------------------RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPD 426

Query: 548 HISWTILIDACGGSGNVEGALQCR 571
            +++  LI      G+V+ AL+ R
Sbjct: 427 LVTYNTLISGYSMKGDVKDALRIR 450



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 124/296 (41%), Gaps = 61/296 (20%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           +Y  ++S ++ ++    + L++       F L  + +M +L +     ++NI+L+  C A
Sbjct: 70  LYSRMKSLSLPISTASLHPLLSALPSAPAFAL--FADMFRLRLPLCTTTFNIMLRHLCSA 127

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS-AGVTP 396
           G    A E+  ++    A         TY+T++  F      Q AL +  +M    G+ P
Sbjct: 128 GKPARALELLRQMPRPNA--------VTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 179

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPNSQCCNILLQACVEACQFDRAFRL 455
           N  T+ ++I+     G V++A+ +F+EML  G  +P +   N L+    +  + D A  L
Sbjct: 180 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL-L 238

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           +R   + +  VA+                                             T 
Sbjct: 239 YRDRMVER-GVAM---------------------------------------------TV 252

Query: 516 TTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            TYN+L+ A   D    +A  L+ EM   GL+P+  ++ ILI+     GNV+ AL+
Sbjct: 253 ATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALE 308



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/175 (17%), Positives = 78/175 (44%), Gaps = 41/175 (23%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327
           G   ++  ++++   + +  ++ ++N+L+N ++   ++    E+   M+K  +  D  +Y
Sbjct: 336 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 395

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N L++  CL G    A+++  E+     +G+ + D+ TY+T++  ++     + AL+++ 
Sbjct: 396 NTLMRGLCLLGRVDEARKLIDEMTE---RGI-QPDLVTYNTLISGYSMKGDVKDALRIRN 451

Query: 388 DMLSA-----------------------------------GVTPNTITWSSLINA 407
           +M++                                    G+TP+  T+ SLI  
Sbjct: 452 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEG 506


>gi|387219047|gb|AFJ69232.1| hypothetical protein NGATSA_2004410 [Nannochloropsis gaditana
           CCMP526]
 gi|422293010|gb|EKU20311.1| hypothetical protein NGA_2004410 [Nannochloropsis gaditana CCMP526]
 gi|422293947|gb|EKU21247.1| hypothetical protein NGA_2004420 [Nannochloropsis gaditana CCMP526]
          Length = 1057

 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 166/369 (44%), Gaps = 44/369 (11%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNI 291
           KKR+  S  R +   ++ +  P++    + I  CG  G +  + ++  ++R+   + L  
Sbjct: 426 KKRNGASHHRRH---QRLVPEPDLVTYHSAIKACGHAGQWEHALSLLAEVRAARWIELEP 482

Query: 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
             +N+ +   A   +F  E    +++ G  +++ +YN  ++AC   G   LA ++   ++
Sbjct: 483 STYNAAIAACAKSGRFN-EALDLLKECGDASNVVTYNSAMQACSSGGRPDLAFQL---LQ 538

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            ++A GV + DV +Y+T+++  +      +A  V   M +AGV+   +T+++L+NACA  
Sbjct: 539 VMKANGV-EPDVVSYTTVMQRSSV----DVATSVLNRMRAAGVSVGVMTYNALLNACARE 593

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL------SKT- 464
           G    ++ + EEM      PN     + ++AC    Q+  A  +    T+      SK  
Sbjct: 594 GDWRTSLAMLEEMDHQSVAPNVVTYTLAMEACGRGGQWQAALEVLNEMTVRGVPLDSKAC 653

Query: 465 QVALG-----EDYDGNTDRISNMEHKDKQSITNTPNFVPNSH------YSSFDKRFSF-- 511
           Q A+      +D++     + ++  + +  I +  +    +        ++F +   +  
Sbjct: 654 QTAIDVCAKVQDWNKALSLLRDVSAQGRDGIGDQGSGKGGTKELYEKAMAAFGRAGEWEK 713

Query: 512 ---------KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560
                    +P     N+ M+AC     +     L+  M + G++P+  S+   I AC  
Sbjct: 714 VLWLLEGMDRPDQKVTNLAMRACAQAGRWEEAVGLLQNMTSKGIAPDQWSYNTAIHACAQ 773

Query: 561 SGNVEGALQ 569
           +GN E AL+
Sbjct: 774 AGNAEKALK 782



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 140/317 (44%), Gaps = 32/317 (10%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNV------------TLNIYVFNSLMNVNAHDLK 306
           C+T IDVC    D+ K+ ++  D+ +Q              T  +Y         A + +
Sbjct: 653 CQTAIDVCAKVQDWNKALSLLRDVSAQGRDGIGDQGSGKGGTKELYEKAMAAFGRAGEWE 712

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             L + + M +     D    N+ ++AC  AG     +E  G ++++ +KG+   D ++Y
Sbjct: 713 KVLWLLEGMDR----PDQKVTNLAMRACAQAGRW---EEAVGLLQNMTSKGIAP-DQWSY 764

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T +   A A   + ALK+ ++M   GV P+ +++++ ++ACA+ G VE ++ L EEM++
Sbjct: 765 NTAIHACAQAGNAEKALKLLKEMGQEGVVPDVVSYTTAMDACASVGDVETSLRLLEEMVK 824

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G  PN +  N ++ A   A Q   A  +        T+  L  D    T     M+   
Sbjct: 825 KGVHPNHRSFNAIMSAHGNAGQATEAIAVLG----LMTEHGLTPDVKSYT---LAMDICL 877

Query: 487 KQSITNTP-NFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLS 545
           +Q +       V   H +    R  F   +    I        +      ++EM   G  
Sbjct: 878 RQGLWQVALKIVERMHAT----RVRFDAISYGKAIHAAHLGEQWEVAVGFLDEMVESGWL 933

Query: 546 PNHISWTILIDACGGSG 562
           P+H S+T++++AC  +G
Sbjct: 934 PSHKSYTLVVEACRRAG 950



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 113/243 (46%), Gaps = 7/243 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLE 310
           +P+ +   T I  C   G+  K+  + +++  + V  ++  + + M+  A   D++ +L 
Sbjct: 758 APDQWSYNTAIHACAQAGNAEKALKLLKEMGQEGVVPDVVSYTTAMDACASVGDVETSLR 817

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + + M K GV  +  S+N ++ A   AG    A  + G    L  +  L  DV +Y+  +
Sbjct: 818 LLEEMVKKGVHPNHRSFNAIMSAHGNAGQATEAIAVLG----LMTEHGLTPDVKSYTLAM 873

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            +      WQ+ALK+ E M +  V  + I++   I+A       E A+   +EM+++G  
Sbjct: 874 DICLRQGLWQVALKIVERMHATRVRFDAISYGKAIHAAHLGEQWEVAVGFLDEMVESGWL 933

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P+ +   ++++AC  A +   A  + R W   K  +A      G    +++   +D +  
Sbjct: 934 PSHKSYTLVVEACRRAGESRLAEEVSRRWARDKESLARANRRRGGKG-LADTRRRDNRGK 992

Query: 491 TNT 493
           +N+
Sbjct: 993 SNS 995



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 29/231 (12%)

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE----VKHLEA 355
           VNA  L   L V K      V   +  Y ++++ C         QE + E    ++ +  
Sbjct: 187 VNAESLPLALAVVKMPH---VHPSVQQYTLVIQICAR-------QERWFEAVRLLRDMRT 236

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +G    D+  Y+ ++   A A  W+ AL +  +M  AGV P+ IT+++ I+ACA  G  +
Sbjct: 237 RGAPP-DLVAYTAVMDCCAKAGQWEAALTLIPEMKEAGVRPDRITYNTAIDACAKGGQWQ 295

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
           +A+    E L+   EPN    N  L +C +  ++  A  L     L + + A G   DG 
Sbjct: 296 RAL----EFLRGMEEPNLISYNSALDSCAKTGRWKEAVGL-----LEEMRQA-GRRKDGR 345

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
              +S+   +   +  NT N +P +  S    + S +P   +YN  ++AC 
Sbjct: 346 GSTVSDQTQEVGANQGNTTNTIPGNRGS----KPSIRPNIISYNTAIEACA 392



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 111/320 (34%), Gaps = 67/320 (20%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLG 319
           +++ C   GD+  S A+ E++  Q+V  N+  +   M         +  LEV   M   G
Sbjct: 586 LLNACAREGDWRTSLAMLEEMDHQSVAPNVVTYTLAMEACGRGGQWQAALEVLNEMTVRG 645

Query: 320 VMADMASYNILLKACCLAGN---------TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V  D  +    +  C    +          V AQ   G       KG  K     Y   +
Sbjct: 646 VPLDSKACQTAIDVCAKVQDWNKALSLLRDVSAQGRDGIGDQGSGKGGTK---ELYEKAM 702

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F  A  W+  L + E M      P+    +  + ACA AG  E+A+ L + M   G  
Sbjct: 703 AAFGRAGEWEKVLWLLEGM----DRPDQKVTNLAMRACAQAGRWEEAVGLLQNMTSKGIA 758

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P+    N  + AC +A   ++A +L +          +G++                   
Sbjct: 759 PDQWSYNTAIHACAQAGNAEKALKLLKE---------MGQE------------------- 790

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNH 548
                                 P   +Y   M AC +  D      L+ EM   G+ PNH
Sbjct: 791 -------------------GVVPDVVSYTTAMDACASVGDVETSLRLLEEMVKKGVHPNH 831

Query: 549 ISWTILIDACGGSGNVEGAL 568
            S+  ++ A G +G    A+
Sbjct: 832 RSFNAIMSAHGNAGQATEAI 851


>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
          Length = 870

 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 153/351 (43%), Gaps = 34/351 (9%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A RA+D          ++    +I      G   ++  + E ++   +      +N++++
Sbjct: 228 ARRAFDTGIAGSYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVID 287

Query: 300 V---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                  DL+FTL  ++ M + G+  D  ++N LL AC  AG+   A+ ++ E+ HL + 
Sbjct: 288 ACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSG 347

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
                D++TY+T V          +AL+V  DM +    PN +T+S+L++  +     ++
Sbjct: 348 ----RDIYTYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDE 403

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL--------FRSWTLSKTQVAL 468
           A+ L E+M     + +  C N LL   V+  ++D    +            T++   +  
Sbjct: 404 ALKLREKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLIN 463

Query: 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNS-----------HYSSFDKRFSFKPTTTT 517
           G    G  D ++ +  +D ++    P+ +  S           H  +F+    FK +   
Sbjct: 464 GYGKQGRLDMVAFLV-QDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLK 522

Query: 518 YNILMKACCTDYYR-------VKALMNEMRTVGLSPNHISWTILIDACGGS 561
            ++++ +   D            +L++EM  +G+ PN +++  +IDA G S
Sbjct: 523 ADVVLFSSFIDTLAKNGLVECALSLLDEMMKMGIKPNVVTYNTIIDAFGKS 573



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 142/313 (45%), Gaps = 20/313 (6%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           + PN+    T++D       Y ++  + E ++S  + L+   +N+L+ +     K+    
Sbjct: 381 AKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIA 440

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            V + M+KLG+  D  +YN L+      G   +   +   V+ + A+GV    V TYST+
Sbjct: 441 TVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFL---VQDMRAQGVAP-SVLTYSTL 496

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           + +++ A     A  V  D   +G+  + + +SS I+  A  GLVE A+ L +EM++ G 
Sbjct: 497 IDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEMMKMGI 556

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +PN    N ++ A      F ++ ++F         + +   Y G   R++N   +  +S
Sbjct: 557 KPNVVTYNTIIDA------FGKS-KIFTEEDSDIGDMGIVGVYGGQVVRVTNPVIRGGRS 609

Query: 490 ITNTPNFVPNSHY---SSFDK--RFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTV 542
            T+         +     F K  +   +P   T++ ++ AC  C  +     L+ ++R  
Sbjct: 610 ATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNSFEDAALLLEQLRLF 669

Query: 543 GLSPNHISWTILI 555
             S   +++ +L+
Sbjct: 670 DNSVYGVAYGLLM 682


>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like, partial [Cucumis sativus]
          Length = 564

 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 6/212 (2%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           +KR +  A +  D       SPN +   TI+      GD  K+ A +  LR + + L++Y
Sbjct: 240 EKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVY 299

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            + +L+     +  ++  L V K M    +  +   YNIL+      G+   A ++   +
Sbjct: 300 TYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADL---M 356

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + ++ +GV + D+ TY++ +   + A   Q A K  E+M S GV PN  T+++LIN  A 
Sbjct: 357 QQMKREGV-QPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWAR 415

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           A L E+A+  FEEM  +G +P+    + L+ +
Sbjct: 416 ASLPEKALSCFEEMKLSGLKPDRAVYHCLMTS 447



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 8/242 (3%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   +  F +K ++  AL  +D  +     P ++    +I          K+  I +++ 
Sbjct: 196 FMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMT 255

Query: 284 SQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              V+ N + + ++M+  A   D       +  ++  G+  D+ +Y  LLKACC +G   
Sbjct: 256 LAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRM- 314

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AKWWQMALKVKEDMLSAGVTPNTIT 400
             Q      K + A+ + + + F Y+ ++  +A     W+ A  + + M   GV P+  T
Sbjct: 315 --QSALAVTKEMSAQNIPR-NTFIYNILIDGWARRGDVWEAA-DLMQQMKREGVQPDIHT 370

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++S INAC+ AG +++A    EEM   G +PN +    L+     A   ++A   F    
Sbjct: 371 YTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMK 430

Query: 461 LS 462
           LS
Sbjct: 431 LS 432



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 131/311 (42%), Gaps = 20/311 (6%)

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNM 315
           I  T++D   + GD  K   ++E  +   +  ++  +  L+N+ A   K +  LEV K M
Sbjct: 55  IYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEM 114

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           +  G+  +M +Y++L+       +   A  I+ ++     K  +K DV  Y+ I+  F  
Sbjct: 115 EHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDL----IKDGIKPDVVLYNNIITAFCG 170

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
                 A+   ++M      P T T+  +I+  A  G +++A+ +F+ M  +GC P    
Sbjct: 171 MGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHT 230

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
            N L+   VE  + ++A ++    TL+            N    + + H    S+ +T  
Sbjct: 231 YNALILGLVEKRKMEKAEQILDEMTLAGVSP--------NEHTYTTIMH-GYASLGDTGK 281

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTI 553
                 Y +  +    +    TY  L+KACC       AL    EM    +  N   + I
Sbjct: 282 AFA---YFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNI 338

Query: 554 LIDACGGSGNV 564
           LID     G+V
Sbjct: 339 LIDGWARRGDV 349



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 139/346 (40%), Gaps = 33/346 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++     +I++    G   K+  + +++    +  N+  ++ L+N  +   D      
Sbjct: 85  NPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFA 144

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +++++ K G+  D+  YN ++ A C  G    A     E++    K   +    T+  I+
Sbjct: 145 IFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTR----TFMPII 200

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             FA     + AL V + M  +G  P   T+++LI        +E+A  + +EM  AG  
Sbjct: 201 HGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVS 260

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG------NTDRI-SNME 483
           PN      ++          +AF  F        Q+ +   Y+        + R+ S + 
Sbjct: 261 PNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDV-YTYEALLKACCKSGRMQSALA 319

Query: 484 HKDKQSITNTP--NFVPN----------SHYSSFD-----KRFSFKPTTTTYNILMKAC- 525
              + S  N P   F+ N            + + D     KR   +P   TY   + AC 
Sbjct: 320 VTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACS 379

Query: 526 -CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
              D  R    + EM++VG+ PN  ++T LI+    +   E AL C
Sbjct: 380 KAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSC 425



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 101/235 (42%), Gaps = 6/235 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +L+ N +  F     +  A+      +K    P       II      G+  K+  +++ 
Sbjct: 159 VLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDM 218

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R       ++ +N+L+   V    ++   ++   M   GV  +  +Y  ++      G+
Sbjct: 219 MRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGD 278

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A   +     L  +G L+LDV+TY  ++K    +   Q AL V ++M +  +  NT 
Sbjct: 279 TGKA---FAYFTKLRDEG-LQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTF 334

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            ++ LI+  A  G V +A  L ++M + G +P+       + AC +A    RA +
Sbjct: 335 IYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATK 389



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/309 (19%), Positives = 122/309 (39%), Gaps = 50/309 (16%)

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           +++ + ++ +LN  ++ +++       ++     + + M++ G+ A +  Y+ ++    +
Sbjct: 6   FQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTM 65

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G+      ++   K       L   V TY  ++ ++A       AL+V ++M  AG+  
Sbjct: 66  VGDEDKCLLVFERFKECG----LNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKH 121

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N  T+S LIN          A  +FE++++ G +P+    N ++ A     + DRA    
Sbjct: 122 NMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTV 181

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK---- 512
           +                         E + ++    T  F+P  H   F ++   K    
Sbjct: 182 K-------------------------EMQKQRHKPTTRTFMPIIH--GFARKGEMKKALD 214

Query: 513 -----------PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACG 559
                      PT  TYN L+          KA  +++EM   G+SPN  ++T ++    
Sbjct: 215 VFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYA 274

Query: 560 GSGNVEGAL 568
             G+   A 
Sbjct: 275 SLGDTGKAF 283



 Score = 42.0 bits (97), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           +PR   ++   +  + ++ D+  A       K+    P+++   + I+ C   GD  ++ 
Sbjct: 329 IPRNTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRAT 388

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
              E+++S  V  N+  + +L+N    A   +  L  ++ M+  G+  D A Y+ L+
Sbjct: 389 KTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLM 445


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 149/358 (41%), Gaps = 65/358 (18%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P +    T+I+  G+C  G++ ++  +++D+ ++    ++Y +N+++N      +     
Sbjct: 161 PTIVTFTTLIN--GLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAA 218

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            + K M++ G   +M +Y+ L+ + C      L  E      +++AKG+   D+FTY+++
Sbjct: 219 GLLKKMEEAGCQPNMVTYSTLIDSLC---RDRLVNEALDIFSYMKAKGI-SPDIFTYTSL 274

Query: 370 VKVFADAKWWQ-----------------------------------MALKVKEDMLSAGV 394
           ++       W+                                    AL V + M   GV
Sbjct: 275 IQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGV 334

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PN +T+SSL+   +    V +A  LF  M+  GC+PN    NIL+    +A + D A +
Sbjct: 335 EPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQ 394

Query: 455 LFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           LF       L+   V+      G        E +D        N   N +          
Sbjct: 395 LFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFR-----NMCTNGNL--------- 440

Query: 512 KPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            P   TY+IL+   C   Y  KA  L   M++  L PN + +TIL+ A   SGN + A
Sbjct: 441 -PDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDA 497



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 155/344 (45%), Gaps = 32/344 (9%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + +   +    + R +  AL  +   K    SP+++   ++I   G+C    + ++ A+ 
Sbjct: 234 VTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQ--GLCKFSRWKEASALL 291

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLA 337
            ++ S N+  +I  FN L++    + K +  L V K M ++GV  ++ +Y+ L+    L 
Sbjct: 292 NEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLW 351

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            + V A++++    H+      K ++F+Y+ ++  +  AK    A+++  +M+  G+TPN
Sbjct: 352 TDVVEARKLF----HVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPN 407

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +++++LI+     G + +A  LF  M   G  P+    +ILL    +     +AFRLFR
Sbjct: 408 NVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFR 467

Query: 458 SW--TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF--SFKP 513
           +   T  K  + +         +  N  HKD + +              F + F    +P
Sbjct: 468 AMQSTYLKPNLVMYTILVHAMCKSGN--HKDARKL--------------FSELFVQGLQP 511

Query: 514 TTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
               Y  ++   C +    +AL     M   G  P+ IS+ ++I
Sbjct: 512 HVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVII 555



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 122/300 (40%), Gaps = 41/300 (13%)

Query: 290 NIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
           NIY  +  MN    +   DL F+  V   + KLG+   + ++  L+   C  G    A E
Sbjct: 127 NIYTLSIFMNCFCQLQRVDLGFS--VLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVE 184

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           ++ +   + AKG  + DV+TY+TI+           A  + + M  AG  PN +T+S+LI
Sbjct: 185 LFDD---MVAKGC-QPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLI 240

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LS 462
           ++     LV +A+ +F  M   G  P+      L+Q   +  ++  A  L    T   + 
Sbjct: 241 DSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIM 300

Query: 463 KTQVALGEDYDG--NTDRISNMEH--KDKQSITNTPNFVPNSHYSSFDKRFSF------- 511
              V      D      ++S      K    +   PN V    YSS    +S        
Sbjct: 301 PDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVT---YSSLMYGYSLWTDVVEA 357

Query: 512 ------------KPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
                       KP   +YNIL+   C      +A  L NEM   GL+PN++S+  LI  
Sbjct: 358 RKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHG 417



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 103/224 (45%), Gaps = 10/224 (4%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYV 293
           D+V A + +         PN++    +I+  G C       A  ++ ++  Q +T N   
Sbjct: 353 DVVEARKLFHVMITKGCKPNIFSYNILIN--GYCKAKRIDEAMQLFNEMIHQGLTPNNVS 410

Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L++       L+   ++++NM   G + D+ +Y+ILL   C  G    A  ++  ++
Sbjct: 411 YNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQ 470

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
                  LK ++  Y+ +V     +   + A K+  ++   G+ P+   ++++IN     
Sbjct: 471 ----STYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKE 526

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           GL+++A+  F  M   GC P+    N++++  ++     RA  L
Sbjct: 527 GLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLL 570



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/258 (19%), Positives = 102/258 (39%), Gaps = 53/258 (20%)

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           K M+ +G+  ++ + +I +   C      L   +  +V  L     L+  + T++T++  
Sbjct: 117 KQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLG----LQPTIVTFTTLING 172

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                 +  A+++ +DM++ G  P+  T++++IN     G    A  L ++M +AGC+PN
Sbjct: 173 LCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPN 232

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
               + L+ +       + A  +F                                    
Sbjct: 233 MVTYSTLIDSLCRDRLVNEALDIF------------------------------------ 256

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHIS 550
                      S+ K     P   TY  L++  C  + +    AL+NEM ++ + P+ ++
Sbjct: 257 -----------SYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVT 305

Query: 551 WTILIDACGGSGNVEGAL 568
           + +L+D     G V  AL
Sbjct: 306 FNVLVDTFCKEGKVSEAL 323



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 55/264 (20%), Positives = 110/264 (41%), Gaps = 40/264 (15%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGS---GFKLLKN--ECQRLLDSGEVEMFVGLME 179
           +EG++   +GVLK + E+GV P  +   S   G+ L  +  E ++L     V +  G   
Sbjct: 315 KEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLF---HVMITKGCKP 371

Query: 180 VLEEFRLPV------KELDEEFRIVQ------LCVNKPDVNLAIRYACIVPR---ADILF 224
            +  + + +      K +DE  ++        L  N    N  I   C + +   A  LF
Sbjct: 372 NIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLF 431

Query: 225 CN---------------FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269
            N                +  F K+  L  A R + A +     PN+ +   ++      
Sbjct: 432 RNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKS 491

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASY 327
           G++  +R ++ +L  Q +  ++ ++ +++N    +  L   LE ++NM+  G   D  SY
Sbjct: 492 GNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISY 551

Query: 328 NILLKACCLAGNTVLAQEIYGEVK 351
           N++++      +   A  + GE++
Sbjct: 552 NVIIRGLLQHKDESRALLLVGEMR 575


>gi|115443739|ref|NP_001045649.1| Os02g0110400 [Oryza sativa Japonica Group]
 gi|41052925|dbj|BAD07836.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535180|dbj|BAF07563.1| Os02g0110400 [Oryza sativa Japonica Group]
 gi|215706484|dbj|BAG93340.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222622028|gb|EEE56160.1| hypothetical protein OsJ_05062 [Oryza sativa Japonica Group]
          Length = 747

 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 4/149 (2%)

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
           ++++++ M  LG+     SYN +LKA    G   +A+ IY  +        +  D+ TY+
Sbjct: 191 SVKLFRLMPDLGIARTALSYNAVLKAILCRGREAMARRIYNAM----IADAVTPDLSTYN 246

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           T++  F   K  + AL+V  DM   GVTP+  T+++L+NA   AG +E A  +F+EM  A
Sbjct: 247 TLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMPGA 306

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLF 456
           G   NS   N++++  VEA + + A  LF
Sbjct: 307 GFAQNSVSYNVMIKGYVEAGKVEEAVGLF 335



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +Y  M    V  D+++YN L+    L      A  ++G++K     GV   DV TY+T++
Sbjct: 229 IYNAMIADAVTPDLSTYNTLIWGFGLCKKMEAALRVFGDMKD---HGVTP-DVTTYNTLL 284

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
             +  A   + A KV ++M  AG   N+++++ +I     AG VE+A+ LF EM + G
Sbjct: 285 NAWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFSEMGEKG 342



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 8/191 (4%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A R Y+A      +P++    T+I   G+C     +  ++ D++   VT ++  +N+L+N
Sbjct: 226 ARRIYNAMIADAVTPDLSTYNTLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTLLN 285

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
             V A DL+   +V+  M   G   +  SYN+++K    AG     +E  G    +  KG
Sbjct: 286 AWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYVEAGKV---EEAVGLFSEMGEKG 342

Query: 358 VLKLDVFTYSTIVKVFADAKWWQM-ALKVKEDMLSAGVTP-NTITWSSLINACANAGLVE 415
            L+L   T++ ++    D +   + A K  +DM    +TP +   +  L+     AG ++
Sbjct: 343 -LRLSEKTFAALMPGLCDDEGRVVEARKAMDDMAERRLTPKDKSVFLRLVTTLCRAGDLD 401

Query: 416 QAMHLFEEMLQ 426
            A+ + ++  Q
Sbjct: 402 GALDVHQKSGQ 412



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 97/204 (47%), Gaps = 15/204 (7%)

Query: 254 PNMYICRTIIDVCGIC------GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDL 305
           P++ I RT +    +       G    +R IY  + +  VT ++  +N+L+        +
Sbjct: 199 PDLGIARTALSYNAVLKAILCRGREAMARRIYNAMIADAVTPDLSTYNTLIWGFGLCKKM 258

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           +  L V+ +M+  GV  D+ +YN LL A   AG+   A++++ E   +   G  +  V +
Sbjct: 259 EAALRVFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDE---MPGAGFAQNSV-S 314

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEM 424
           Y+ ++K + +A   + A+ +  +M   G+  +  T+++L+   C + G V +A    ++M
Sbjct: 315 YNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLSEKTFAALMPGLCDDEGRVVEARKAMDDM 374

Query: 425 LQAGCEPNSQCCNILLQACVEACQ 448
            +    P  +  ++ L+     C+
Sbjct: 375 AERRLTPKDK--SVFLRLVTTLCR 396



 Score = 38.9 bits (89), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 129/325 (39%), Gaps = 28/325 (8%)

Query: 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183
           +  G+++  VG+  ++ E G   L L + +   L+   C    D G V      M+ + E
Sbjct: 323 VEAGKVEEAVGLFSEMGEKG---LRLSEKTFAALMPGLCD---DEGRVVEARKAMDDMAE 376

Query: 184 FRLPVKELDEEFRIVQLCVNKPDVNLAI---------RYACIVPRADILFCNFVREFGKK 234
            RL  K+     R+V       D++ A+         ++  + PR   +    +   GK 
Sbjct: 377 RRLTPKDKSVFLRLVTTLCRAGDLDGALDVHQKSGQFKHVLVDPRQYGVLMESLCAGGKC 436

Query: 235 RDLVSALRAYDASKKHLSSPNMYICR-----TIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
              V  +      K  L SP   +        +I+     G+  K+   +  L  + V  
Sbjct: 437 DGAVEVMDEL-LEKGTLLSPKSPVLEGPAYNPVIEYLCSNGNTSKAETFFRQLMKKGVD- 494

Query: 290 NIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +   FNSL+  +A +   +   E+   M + GV  D  S+ +L+ +         A+   
Sbjct: 495 DKAAFNSLIRGHAKEGVPEAAQEILAIMTRRGVRTDPESHALLVDSFLKKNEPADAKTAL 554

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             +  +E   V    +F  S +V +F   +  Q A +V + M+  GVT N      ++ A
Sbjct: 555 DSM--MEQGHVPSPSLF-MSVMVALFNSGRV-QTASRVMKSMIEKGVTENMDMAHKILEA 610

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPN 432
               G VE+A+     M++ GC P+
Sbjct: 611 LFMRGHVEEAIGRVNLMVENGCLPD 635


>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g31840
 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 840

 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 106/238 (44%), Gaps = 6/238 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + FC  +  F K+ ++  A   +   ++    P++    T+ID     G       ++  
Sbjct: 287 VTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQ 346

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
              + V L++ VF+S ++V   + DL     VYK M   G+  ++ +Y IL+K  C  G 
Sbjct: 347 ALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGR 406

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  +YG++     K  ++  + TYS+++  F      +    + EDM+  G  P+ +
Sbjct: 407 IYEAFGMYGQI----LKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVV 462

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +  L++  +  GL+  AM    +ML      N    N L+       +FD A ++FR
Sbjct: 463 IYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFR 520



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 127/296 (42%), Gaps = 33/296 (11%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  F +L+N      ++    +++K M++ G+  D+ +Y+ L+     AG   +  +++
Sbjct: 285 NVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLF 344

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            +  H   KGV KLDV  +S+ + V+  +     A  V + ML  G++PN +T++ LI  
Sbjct: 345 SQALH---KGV-KLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKG 400

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKT 464
               G + +A  ++ ++L+ G EP+    + L+    +       F L+           
Sbjct: 401 LCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPD 460

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPN------FVPNS------HYSSFDKR---- 508
            V  G   DG + +   M H  + S+            V NS        + FD+     
Sbjct: 461 VVIYGVLVDGLSKQ-GLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVF 519

Query: 509 -----FSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
                +  KP   T+  +M+    +    +A  L   M  +GL P+ +++  LIDA
Sbjct: 520 RLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDA 575



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 156/354 (44%), Gaps = 24/354 (6%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           ++F + +  + K  DL +A   Y        SPN+ +  TI+ + G+C  G   ++  +Y
Sbjct: 357 VVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNV-VTYTIL-IKGLCQDGRIYEAFGMY 414

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
             +  + +  +I  ++SL++      +L+    +Y++M K+G   D+  Y +L+    L+
Sbjct: 415 GQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDG--LS 472

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
              ++   +   VK L     ++L+V  +++++  +     +  ALKV   M   G+ P+
Sbjct: 473 KQGLMLHAMRFSVKMLGQS--IRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPD 530

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             T+++++      G +E+A+ LF  M + G EP++     L+ A  +  +     +LF 
Sbjct: 531 VATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFD 590

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
               +K    +        + + ++  K    I +   F  N      +      P   T
Sbjct: 591 LMQRNKISADIAV-----CNVVIHLLFK-CHRIEDASKFFNNLIEGKME------PDIVT 638

Query: 518 YNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           YN ++   C+       + +   ++     PN ++ TILI     + +++GA++
Sbjct: 639 YNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIR 692



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/356 (19%), Positives = 144/356 (40%), Gaps = 32/356 (8%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + + + +  F K  +L S    Y+   K    P++ I   ++D     G  + +      
Sbjct: 427 VTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVK 486

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q++ LN+ VFNSL++      +F   L+V++ M   G+  D+A++  +++   + G 
Sbjct: 487 MLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGR 546

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  ++  +  +     L+ D   Y T++  F       + L++ + M    ++ +  
Sbjct: 547 LEEALFLFFRMFKMG----LEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIA 602

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
             + +I+       +E A   F  +++   EP+    N ++       + D A R+F   
Sbjct: 603 VCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELL 662

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF------KP 513
            ++         +  NT  ++ + H              N+      + FS       KP
Sbjct: 663 KVTP--------FGPNTVTLTILIHV----------LCKNNDMDGAIRMFSIMAEKGSKP 704

Query: 514 TTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              TY  LM   +   D      L  EM+  G+SP+ +S++I+ID     G V+ A
Sbjct: 705 NAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEA 760



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/221 (16%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +C  +  F K       L+ +D  +++  S ++ +C  +I +   C     +   + +L 
Sbjct: 569 YCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLI 628

Query: 284 SQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              +  +I  +N+++    +   L     +++ ++      +  +  IL+   C   +  
Sbjct: 629 EGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMD 688

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  ++     + A+   K +  TY  ++  F+ +   + + K+ E+M   G++P+ +++
Sbjct: 689 GAIRMFS----IMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSY 744

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           S +I+     G V++A ++F + + A   P+     IL++ 
Sbjct: 745 SIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRG 785



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 111/268 (41%), Gaps = 26/268 (9%)

Query: 195 FRIVQLCVNKPDV---NLAIRYACIVPRADILFCNFVREF--GKKRDLVSALRAYDASKK 249
           FR++ +   KPDV      +R + +  R +     F R F  G + D ++     DA  K
Sbjct: 519 FRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCK 578

Query: 250 HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL 309
           H+      I   + D+       M+   I  D+   NV +++           H ++   
Sbjct: 579 HMKPT---IGLQLFDL-------MQRNKISADIAVCNVVIHLLF-------KCHRIEDAS 621

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           + + N+ +  +  D+ +YN ++   C       A+ I+ E+  +   G    +  T + +
Sbjct: 622 KFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIF-ELLKVTPFGP---NTVTLTIL 677

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           + V         A+++   M   G  PN +T+  L++  + +  +E +  LFEEM + G 
Sbjct: 678 IHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGI 737

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFR 457
            P+    +I++    +  + D A  +F 
Sbjct: 738 SPSIVSYSIIIDGLCKRGRVDEATNIFH 765


>gi|218189906|gb|EEC72333.1| hypothetical protein OsI_05540 [Oryza sativa Indica Group]
          Length = 747

 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 4/149 (2%)

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
           ++++++ M  LG+     SYN +LKA    G   +A+ IY  +        +  D+ TY+
Sbjct: 191 SVKLFRLMPDLGIARTALSYNAVLKAILCRGREAMARRIYNAM----IADAVTPDLSTYN 246

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           T++  F   K  + AL+V  DM   GVTP+  T+++L+NA   AG +E A  +F+EM  A
Sbjct: 247 TLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMPGA 306

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLF 456
           G   NS   N++++  VEA + + A  LF
Sbjct: 307 GFAQNSVSYNVMIKGYVEAGKVEEAVGLF 335



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +Y  M    V  D+++YN L+    L      A  ++G++K     GV   DV TY+T++
Sbjct: 229 IYNAMIADAVTPDLSTYNTLIWGFGLCKKMEAALRVFGDMKD---HGVTP-DVTTYNTLL 284

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
             +  A   + A KV ++M  AG   N+++++ +I     AG VE+A+ LF EM + G
Sbjct: 285 NAWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFSEMGEKG 342



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 8/191 (4%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A R Y+A      +P++    T+I   G+C     +  ++ D++   VT ++  +N+L+N
Sbjct: 226 ARRIYNAMIADAVTPDLSTYNTLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTLLN 285

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
             V A DL+   +V+  M   G   +  SYN+++K    AG     +E  G    +  KG
Sbjct: 286 AWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYVEAGKV---EEAVGLFSEMGEKG 342

Query: 358 VLKLDVFTYSTIVKVFADAKWWQM-ALKVKEDMLSAGVTP-NTITWSSLINACANAGLVE 415
            L+L   T++ ++    D +   + A K  +DM    +TP +   +  L+     AG ++
Sbjct: 343 -LRLSEKTFAALMPGLCDDEGRVVEARKAMDDMAERRLTPKDKSVFLRLVTTLCRAGDLD 401

Query: 416 QAMHLFEEMLQ 426
            A+ + ++  Q
Sbjct: 402 GALDVHQKSGQ 412



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 97/204 (47%), Gaps = 15/204 (7%)

Query: 254 PNMYICRTIIDVCGIC------GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDL 305
           P++ I RT +    +       G    +R IY  + +  VT ++  +N+L+        +
Sbjct: 199 PDLGIARTALSYNAVLKAILCRGREAMARRIYNAMIADAVTPDLSTYNTLIWGFGLCKKM 258

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           +  L V+ +M+  GV  D+ +YN LL A   AG+   A++++ E   +   G  +  V +
Sbjct: 259 EAALRVFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDE---MPGAGFAQNSV-S 314

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEM 424
           Y+ ++K + +A   + A+ +  +M   G+  +  T+++L+   C + G V +A    ++M
Sbjct: 315 YNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLSEKTFAALMPGLCDDEGRVVEARKAMDDM 374

Query: 425 LQAGCEPNSQCCNILLQACVEACQ 448
            +    P  +  ++ L+     C+
Sbjct: 375 AERRLTPKDK--SVFLRLVTTLCR 396



 Score = 38.9 bits (89), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 129/325 (39%), Gaps = 28/325 (8%)

Query: 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183
           +  G+++  VG+  ++ E G   L L + +   L+   C    D G V      M+ + E
Sbjct: 323 VEAGKVEEAVGLFSEMGEKG---LRLSEKTFAALMPGLCD---DEGRVVEARKAMDDMAE 376

Query: 184 FRLPVKELDEEFRIVQLCVNKPDVNLAI---------RYACIVPRADILFCNFVREFGKK 234
            RL  K+     R+V       D++ A+         ++  + PR   +    +   GK 
Sbjct: 377 RRLTPKDKSVFLRLVTTLCRAGDLDGALDVHQKSGQFKHVLVDPRQYGVLMESLCAGGKC 436

Query: 235 RDLVSALRAYDASKKHLSSPNMYICR-----TIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
              V  +      K  L SP   +        +I+     G+  K+   +  L  + V  
Sbjct: 437 DGAVEVMDEL-LEKGTLLSPKSPVLEGPAYNPVIEYLCSNGNTSKAETFFRQLMKKGVD- 494

Query: 290 NIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +   FNSL+  +A +   +   E+   M + GV  D  S+ +L+ +         A+   
Sbjct: 495 DKAAFNSLIRGHAKEGVPEAAQEILAIMTRRGVRTDPESHALLVDSFLKKNEPADAKTAL 554

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             +  +E   V    +F  S +V +F   +  Q A +V + M+  GVT N      ++ A
Sbjct: 555 DSM--MEQGHVPSPSLF-MSVMVALFNGGRV-QTASRVMKSMIEKGVTENMDMAHKILEA 610

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPN 432
               G VE+A+     M++ GC P+
Sbjct: 611 LFMRGHVEEAIGRVNLMVENGCLPD 635


>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
           [Acanthamoeba castellanii str. Neff]
          Length = 559

 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 140/322 (43%), Gaps = 24/322 (7%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P M     +ID  G  GD  +    +ED+R Q +  N+ V+ S++       D+      
Sbjct: 131 PGMSTYTILIDAWGKAGDLRRMWQAWEDMREQGLRPNVVVYTSVIATLGKLGDVAAMERT 190

Query: 312 YKNMQKL---GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +  MQ+    GV  +  +YN ++ +    G   +  ++   V+ + A   L LD FT+S 
Sbjct: 191 FAEMQRSSGDGVEPNRTTYNAMVHSY---GQQQMMDKMEALVERMRADPGLGLDNFTHSA 247

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +V  ++ A     AL+  + + + G  P+   W+++++    AG  ++ +   ++M + G
Sbjct: 248 VVAAWSRAGRVDKALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKMKRLG 307

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG-EDYDGNTDRISNMEHKDK 487
            +P++   N ++ A  +A         F++  + +  VA   + Y+   D          
Sbjct: 308 VKPSTAVYNTIINAFGKARNIHSMMDTFKA--MRRDGVAADVKTYNTLID---------- 355

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLS 545
            +   T   V    +    KR   +PT  T   LM A      + +V  L++ M+  G +
Sbjct: 356 -TWAKTGKAVEAEKFYVLMKREGLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRA 414

Query: 546 PNHISWTILIDACGGSGNVEGA 567
           P+++ + +LID  G  G  E A
Sbjct: 415 PDNVVFNLLIDTYGRMGKPEEA 436



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 55/284 (19%), Positives = 119/284 (41%), Gaps = 28/284 (9%)

Query: 291 IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           + VF+ L+     A D +   +V ++M+++GV   M++Y IL+ A   AG+    + ++ 
Sbjct: 98  LAVFDVLLQGYGRAGDRQRLAQVQRDMREVGVRPGMSTYTILIDAWGKAGDL---RRMWQ 154

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKV---FADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
             + +  +G L+ +V  Y++++       D    +      +     GV PN  T+++++
Sbjct: 155 AWEDMREQG-LRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMV 213

Query: 406 NACANAGLVEQAMHLFEEM-LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
           ++     ++++   L E M    G   ++   + ++ A   A + D+A   F S   +  
Sbjct: 214 HSYGQQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSIAATGG 273

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILM 522
           Q +L   +      +      D+                + D  KR   KP+T  YN ++
Sbjct: 274 QPSL-HAWTAILHMLGTAGRSDEM-------------LRTLDKMKRLGVKPSTAVYNTII 319

Query: 523 KAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
            A     + + +      MR  G++ +  ++  LID    +G  
Sbjct: 320 NAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKA 363



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 2/110 (1%)

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV--FTYSTIVKVFADAKWWQMA 382
           A Y +L++ C       LA ++Y  ++           V    +  +++ +  A   Q  
Sbjct: 58  AKYEMLIEQCFEEKRPDLATQLYDHLRAETTTTQAAAPVPLAVFDVLLQGYGRAGDRQRL 117

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
            +V+ DM   GV P   T++ LI+A   AG + +    +E+M + G  PN
Sbjct: 118 AQVQRDMREVGVRPGMSTYTILIDAWGKAGDLRRMWQAWEDMREQGLRPN 167



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 91/238 (38%), Gaps = 43/238 (18%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           ++   +  FGK R++ S +  + A ++   + ++    T+ID     G  +++   Y  +
Sbjct: 314 VYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLM 373

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           + + +   +Y   SLM+    A   +  L +   M+K G   D   +N+L+         
Sbjct: 374 KREGLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRAPDNVVFNLLI--------- 424

Query: 341 VLAQEIYGEV-KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
               + YG + K  EA+ VL   +  Y                          G+   T 
Sbjct: 425 ----DTYGRMGKPEEAEKVLCGAMKEY--------------------------GIALETN 454

Query: 400 TWSSLINACANAGLVEQAMHLFEEM-LQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            ++S+I A A  G +++A      M      +P+ +    LL  C+ A    R  R+ 
Sbjct: 455 NFTSVIEAWARNGNLDKAEEWLHRMNTDYATKPDIKTLTTLLSFCIPAADVKRGRRVI 512


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 142/330 (43%), Gaps = 33/330 (10%)

Query: 250 HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLK 306
           H  S +++    +I+  G  G Y  S  + E ++ + V+ +I  +N+++N  A    D +
Sbjct: 172 HGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWE 231

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             L ++  M+  G+  D+ +YN LL AC    N  L  E     + +   GV+  D+ TY
Sbjct: 232 GLLGLFAEMRHEGIQPDIVTYNTLLCACS---NRGLGDEAEMVFRTMNEGGVVP-DITTY 287

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + +V  F          ++ ++M S G  P   +++ L+ A A  G +E A  +F  M +
Sbjct: 288 TYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQE 347

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
           AGC PN++  +ILL    +  ++D    LF                     ++SN E   
Sbjct: 348 AGCVPNAETYSILLGLYGKHGRYDEVRELFLEM------------------KVSNTEPDA 389

Query: 487 KQSITNTPNFVPNSHYSSFDKRF------SFKPTTTTYNILMKACCTD--YYRVKALMNE 538
               T    F    ++      F      + +P   TY  L+ AC     +   K ++  
Sbjct: 390 ATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLH 449

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           M   G+ P+  ++T +I+A G +   E AL
Sbjct: 450 MSEKGMIPSSKAYTGVIEAYGQAAMYEEAL 479



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/383 (21%), Positives = 154/383 (40%), Gaps = 34/383 (8%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKS 275
           V R+   +   +  +G+      +L   +  KK   SP++    T+I+ C   G D+   
Sbjct: 174 VSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGL 233

Query: 276 RAIYEDLRSQNVTLNIYVFNSLM-NVNAHDLKFTLE-VYKNMQKLGVMADMASYNILLKA 333
             ++ ++R + +  +I  +N+L+   +   L    E V++ M + GV+ D+ +Y  L+  
Sbjct: 234 LGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDT 293

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
                      E+   +K + + G +  ++ +Y+ +++ +A     + A  V   M  AG
Sbjct: 294 FGKLNRLDKVSEL---LKEMASTGNVP-EISSYNVLLEAYARIGNIEDATGVFRLMQEAG 349

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             PN  T+S L+      G  ++   LF EM  +  EP++   N L+    E   F    
Sbjct: 350 CVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVV 409

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNME-HKDKQSI---TNTPNFVPNSH-YSSFDKR 508
            LF        +  + E Y+G          H D + I    +    +P+S  Y+   + 
Sbjct: 410 TLFHDMAEENVEPNM-ETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEA 468

Query: 509 F-------------------SFKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSPN 547
           +                     KPT  TYN  I M A    Y   +A++ +M   G++  
Sbjct: 469 YGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGVARE 528

Query: 548 HISWTILIDACGGSGNVEGALQC 570
             S+  +I+     G  E A++ 
Sbjct: 529 RDSFNGVIEGFRQGGQFEEAIKA 551



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/270 (19%), Positives = 118/270 (43%), Gaps = 40/270 (14%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM----NVNAHDLKF 307
           + P+     T+IDV G  G + +   ++ D+  +NV  N+  +  L+        HD   
Sbjct: 385 TEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHD--D 442

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAG---------NTVLAQ------EIYGEVKH 352
             ++  +M + G++    +Y  +++A   A          NT+         E Y  + +
Sbjct: 443 AKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIY 502

Query: 353 LEAKG---------VLKLDVF-------TYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           + A+G         +LK+  F       +++ +++ F     ++ A+K   +M  + + P
Sbjct: 503 MFARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVP 562

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +  T  ++++    AGLV++++  F+E+  +G  PN  C  ++L    ++ +++ A+ L 
Sbjct: 563 DERTLEAVLSVYCIAGLVDESVEQFQEIKASGILPNVMCYCMMLAVYAKSDRWNEAYELL 622

Query: 457 RSWTL---SKTQVALGEDYDGNTDRISNME 483
                   S     +G+   G+ D  SN +
Sbjct: 623 DEMLTNRASNIHQVIGQMIKGDFDDDSNWQ 652



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 102/239 (42%), Gaps = 13/239 (5%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  +G+      AL   +   +  S P +    T+I +    G Y ++ AI   + 
Sbjct: 462 YTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMG 521

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              V      FN ++       +F   ++ Y  M+K  ++ D  +   +L   C+AG   
Sbjct: 522 DFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAG--- 578

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
           L  E   + + ++A G+L  +V  Y  ++ V+A +  W  A ++ ++ML+   +      
Sbjct: 579 LVDESVEQFQEIKASGILP-NVMCYCMMLAVYAKSDRWNEAYELLDEMLTNRASNIHQVI 637

Query: 402 SSLINAC----ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             +I       +N  +VE   ++F+++   GC    +  N LL+A     Q +RA R+ 
Sbjct: 638 GQMIKGDFDDDSNWQMVE---YVFDKLNSEGCGLGMRFYNTLLEALWWLGQKERAVRVL 693


>gi|307110307|gb|EFN58543.1| hypothetical protein CHLNCDRAFT_140648 [Chlorella variabilis]
          Length = 877

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 13/209 (6%)

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQ----NVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           +C T+I+VCG  GD  ++ A Y  +RS      +  +++ + + M   +   ++   L +
Sbjct: 252 LCTTLIEVCGRKGDTDRALAAYAQMRSSPKDSRMAPSVHAYTAAMRAASEGGRWEAALSI 311

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           + +MQ  G      +Y  ++ AC   G     Q+  G    + A GV + DV + + ++ 
Sbjct: 312 WDDMQAAGCKPTGHAYAAVISACAAGGQW---QKAVGLFDDMLAWGV-RPDVVSCTALIT 367

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ---AG 428
                  W+ A KV E ML + + PN  T+++LI A  NA   ++A+ + + M +    G
Sbjct: 368 ALGTDGQWERAEKVVEWMLRSEIKPNVRTYTALITALGNARQWDRALDIVKRMRRHAFGG 427

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
            EPNS   + LL+   E  ++  A R FR
Sbjct: 428 LEPNSYTYSALLKTMGEQGKWQMAERFFR 456



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 121/278 (43%), Gaps = 17/278 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN------VTLNIYVFNSLMN--VNAHDL 305
           P+  +C T++ VC   G    + ++Y+ +R+        +T +++ + + M   +    +
Sbjct: 172 PDDRLCTTLMRVCAQHGQAATALSLYDWMRTPGEEGGGGLTPSVFTYTAAMRAALTGSMM 231

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
              L+V+++        D      L++ C   G+T  A   Y +++       +   V  
Sbjct: 232 DRALQVWEDALAAKCEVDCRLCTTLIEVCGRKGDTDRALAAYAQMRSSPKDSRMAPSVHA 291

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+  ++  ++   W+ AL + +DM +AG  P    ++++I+ACA  G  ++A+ LF++ML
Sbjct: 292 YTAAMRAASEGGRWEAALSIWDDMQAAGCKPTGHAYAAVISACAAGGQWQKAVGLFDDML 351

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
             G  P+   C  L+ A     Q++RA ++   W L          Y      + N    
Sbjct: 352 AWGVRPDVVSCTALITALGTDGQWERAEKVV-EWMLRSEIKPNVRTYTALITALGNARQW 410

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
           D+       + V      +F      +P + TY+ L+K
Sbjct: 411 DRAL-----DIVKRMRRHAFG---GLEPNSYTYSALLK 440



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%)

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           W+ AL+V++ M +AG+ P+   +++LI AC  A   E+AM +  +M +AG   NS   ++
Sbjct: 779 WRAALRVRDRMAAAGLAPSVHVYNALIAACDRAHQYERAMEVARDMGRAGVPTNSVTQSL 838

Query: 439 LLQACVEACQ 448
           L   C E  +
Sbjct: 839 LDGVCKEGVR 848



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 88/224 (39%), Gaps = 35/224 (15%)

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE------PN 432
           W+ AL + E +L  G  P+    ++L+  CA  G    A+ L++ M   G E      P+
Sbjct: 155 WRRALMLHEWLLEIGYRPDDRLCTTLMRVCAQHGQAATALSLYDWMRTPGEEGGGGLTPS 214

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV------ALGE--DYDGNTDRI----S 480
                  ++A +     DRA +++     +K +V       L E     G+TDR     +
Sbjct: 215 VFTYTAAMRAALTGSMMDRALQVWEDALAAKCEVDCRLCTTLIEVCGRKGDTDRALAAYA 274

Query: 481 NMEH--KDKQSITNTPNFVPNSHYSSFDKRFSF-------------KPTTTTYNILMKAC 525
            M    KD +   +   +      +S   R+               KPT   Y  ++ AC
Sbjct: 275 QMRSSPKDSRMAPSVHAYTAAMRAASEGGRWEAALSIWDDMQAAGCKPTGHAYAAVISAC 334

Query: 526 CT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                + +   L ++M   G+ P+ +S T LI A G  G  E A
Sbjct: 335 AAGGQWQKAVGLFDDMLAWGVRPDVVSCTALITALGTDGQWERA 378



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%)

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           WQ A+ V +   + G  P    +  LI A +  G    A+ + + M  AG  P+    N 
Sbjct: 744 WQEAVAVLDRAQTLGFAPRDYAYCGLIAAHSFKGDWRAALRVRDRMAAAGLAPSVHVYNA 803

Query: 439 LLQACVEACQFDRAFRLFR 457
           L+ AC  A Q++RA  + R
Sbjct: 804 LIAACDRAHQYERAMEVAR 822


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 142/323 (43%), Gaps = 29/323 (8%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
           SPN+   + +I      G  M++      L   +V  ++Y+FN L++    D      ++
Sbjct: 59  SPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVK 118

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +++NM+   V  ++ +YN ++   C +GN   A+E+  E+  +   G    D+ TY+T++
Sbjct: 119 LFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEM--IRKGGKSAPDIVTYNTLI 176

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F  A   + A   +E M +AG+ P+ +T + L++     G VE+A+ + + M  AG  
Sbjct: 177 NAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPV 236

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P+    N ++ A   A +   A  + ++ + S   V      DG     + M  +  + +
Sbjct: 237 PDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCK--AGMLPRALEVL 294

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC------TDYYRVKALMNEMRTVGL 544
                            R +  P   TY IL+   C        +Y    L+ E+   G 
Sbjct: 295 EEMC-------------RENILPDVITYTILVNGLCRVGQVQVAFY----LLEEIVRQGY 337

Query: 545 SPNHISWTILIDACGGSGNVEGA 567
            P+ I++T L+D    SG +E A
Sbjct: 338 IPDVIAYTSLVDGLCKSGEIEEA 360



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 141/312 (45%), Gaps = 27/312 (8%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           S+P++    T+I+         ++ A  E +++  +  ++   N L++      D++  L
Sbjct: 165 SAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEAL 224

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+   M+  G + D+ +YN ++ A C+AG  V A EI   +           D+ T++T+
Sbjct: 225 EILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS-------CSPDLVTFNTL 277

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  F  A     AL+V E+M    + P+ IT++ L+N     G V+ A +L EE+++ G 
Sbjct: 278 LDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGY 337

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLS--KTQVALGEDYDGNTDRISNMEHKDK 487
            P+      L+    ++ + + A +L +  ++   +T V +         R  N+ HK +
Sbjct: 338 IPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNV-HKAR 396

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
           + +    +              +  P   TYNI++     D    KA  L++++   G  
Sbjct: 397 EILAEMVS-------------INMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYV 443

Query: 546 PNHISWTILIDA 557
           P+ +++  LID 
Sbjct: 444 PDVVTYNTLIDG 455



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 142/313 (45%), Gaps = 46/313 (14%)

Query: 290 NIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           +++ +N L+++   + H  + T +VYK++   G   ++ ++ IL++  C AG  + A E 
Sbjct: 26  DVHSYNHLLDILVKSGHHFR-TGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEF 84

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
              ++ L+   V   DV+ ++ ++  +F D    Q A+K+ E+M S+ V P  +T++++I
Sbjct: 85  ---LRALDEFSVAP-DVYIFNVLIHGLFKDGNPDQ-AVKLFENMESSRVKPEIVTYNTVI 139

Query: 406 NACANAGLVEQAMHLFEEMLQAGCE--PNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           +    +G +E+A  L EEM++ G +  P+    N L+ A      F RA R+  +    +
Sbjct: 140 SGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINA------FYRASRIREACAFRE 193

Query: 464 TQVALGEDYD------------GNTDRISNMEHKDKQSITN-TPNFVP-NS--------- 500
              A G + D             + D    +E  D   +    P+ +  NS         
Sbjct: 194 KMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAG 253

Query: 501 ---HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
                +   K  S  P   T+N L+   C      +AL  + EM    + P+ I++TIL+
Sbjct: 254 KVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILV 313

Query: 556 DACGGSGNVEGAL 568
           +     G V+ A 
Sbjct: 314 NGLCRVGQVQVAF 326



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 38/225 (16%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           K DV +Y+ ++ +   +       KV +D+L +G +PN +T+  LI     AG   +A+ 
Sbjct: 24  KHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALE 83

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ--------VALGED 471
               + +    P+    N+L+    +    D+A +LF +   S+ +        V  G  
Sbjct: 84  FLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLC 143

Query: 472 YDGNTDRISN-MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
             GN ++    +E   ++   + P+ V                   TYN L+ A    +Y
Sbjct: 144 KSGNLEKARELLEEMIRKGGKSAPDIV-------------------TYNTLINA----FY 180

Query: 531 RVK------ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           R        A   +M+  G++P+ ++  IL+      G+VE AL+
Sbjct: 181 RASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALE 225



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 91/198 (45%), Gaps = 10/198 (5%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           SP++    T++D  G C   M  RA  + E++  +N+  ++  +  L+N       ++  
Sbjct: 268 SPDLVTFNTLLD--GFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVA 325

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
             + + + + G + D+ +Y  L+   C +G     +E +  VK +  +G  +  V  YS+
Sbjct: 326 FYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEI---EEAHKLVKEMSVRGC-RTGVVMYSS 381

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +V  +  A     A ++  +M+S  + P   T++ ++      G + +A+ L  +++  G
Sbjct: 382 LVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARG 441

Query: 429 CEPNSQCCNILLQACVEA 446
             P+    N L+    +A
Sbjct: 442 YVPDVVTYNTLIDGLCKA 459



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 94/203 (46%), Gaps = 10/203 (4%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P++    +++D  G+C  G+  ++  + +++  +     + +++SL++    A ++    
Sbjct: 339 PDVIAYTSLVD--GLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAR 396

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+   M  + ++  + +YNI+L      G+   A  +   +  L A+G +  DV TY+T+
Sbjct: 397 EILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSL---ISDLVARGYVP-DVVTYNTL 452

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +     A   + A  + ++M S G  PN +T  S++      G V+ A  L  EM +   
Sbjct: 453 IDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRH 512

Query: 430 EPNSQCCNILLQACVEACQFDRA 452
            PN      L+    ++ + D A
Sbjct: 513 APNVVVYTSLIDGLCKSDRMDDA 535



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 41/221 (18%), Positives = 87/221 (39%), Gaps = 35/221 (15%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV 320
           V G C  G+  K+R I  ++ S N+   ++ +N ++   +    +   + +  ++   G 
Sbjct: 383 VSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGY 442

Query: 321 MADMASYNILL----------KAC----------CLAGNTVLAQEIYGEVKHLEAKGVLK 360
           + D+ +YN L+          +AC          C   +  L   ++G  +         
Sbjct: 443 VPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWS 502

Query: 361 L-----------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           L           +V  Y++++     +     A  V + M   GV  +   +  LI + +
Sbjct: 503 LVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMS 562

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
           + G V +AM +++EM+  G  P+      L +A +    F+
Sbjct: 563 HGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSVFE 603


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 179/396 (45%), Gaps = 46/396 (11%)

Query: 189 KELDEEFRIVQLCVN---KPDV---NLAIRYACIVPRAD------------------ILF 224
           K  DE +RI+    N   KPDV    + I+  C   R                    + +
Sbjct: 369 KRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTY 428

Query: 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284
              + +FG   D  S +  ++A K    + N+     +ID     G   ++  ++++++ 
Sbjct: 429 ITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQ 488

Query: 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + +    Y +NSL++  + A      LE++K+M   G   +  ++ + +     +G ++ 
Sbjct: 489 KGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIK 548

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A + Y   + +++KG++  DV   + ++   A +    MA +V  ++ + GV+P+TIT++
Sbjct: 549 AIQRY---ELMKSKGIVP-DVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYT 604

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
            +I  C+ A   ++A+ +F +M++  C P+    N L+    +A + D A+R+F  + L 
Sbjct: 605 MMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIF--YQLK 662

Query: 463 KTQVALGEDYDGNTDR-ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
           +  +   E  DG  +  ++ +  + K  +    + +   ++S      ++ P   TYN +
Sbjct: 663 EMNL---EPTDGTYNTLLAGLGREGK--VKEVMHLLEEMYHS------NYPPNLITYNTI 711

Query: 522 MKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
           +   C +     AL  +  M T G  P+  S+  +I
Sbjct: 712 LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVI 747



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 142/321 (44%), Gaps = 29/321 (9%)

Query: 255  NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
            + ++C  I  +C      +++  + +  +S  V+L   ++NSL+   V+ + +     ++
Sbjct: 845  DFFLCPLIKHLCKQ-KKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLF 903

Query: 313  KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
              M++LG   D  +YN+LL A    G ++  +E+    + +  KG     V TY+TI+  
Sbjct: 904  AEMKELGCGPDEFTYNLLLDA---MGKSMRIEEMLKVQEEMHRKGYESTYV-TYNTIISG 959

Query: 373  FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
               ++  + A+ +  +++S G +P   T+  L++    AG +E A +LF EML+ GC+ N
Sbjct: 960  LVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKAN 1019

Query: 433  SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
                NILL     A   ++   LF+                   D+  N + K    I +
Sbjct: 1020 CTIYNILLNGHRIAGNTEKVCHLFQDM----------------VDQGINPDIKSYTIIID 1063

Query: 493  T--PNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
            T       N   + F +      +P   TYN+L+          +A  L NEM+  G+ P
Sbjct: 1064 TLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVP 1123

Query: 547  NHISWTILIDACGGSGNVEGA 567
            N  ++  LI   G +G    A
Sbjct: 1124 NLYTYNSLILHLGKAGKAAEA 1144



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 136/342 (39%), Gaps = 53/342 (15%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           FGK+RD+ + L      + H   PN+Y     I V G                       
Sbjct: 330 FGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLG----------------------- 366

Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
                      A        +   M+  G   D+ ++ +L++  C AG    A++++ ++
Sbjct: 367 ----------QAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKM 416

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K    K   K D  TY T++  F D    Q  +++   M + G   N + ++++I+A   
Sbjct: 417 K----KSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQ 472

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G V +A+ +F+EM Q G  P     N L+   ++A +F  A  LF+   +       G 
Sbjct: 473 VGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIH------GP 526

Query: 471 DYDGNTDRI-SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM--KACCT 527
             +G T  +  N   K  +SI     +          K     P     N ++   A   
Sbjct: 527 KPNGYTHVLFINYYGKSGESIKAIQRY-------ELMKSKGIVPDVVAGNAVLFGLAKSG 579

Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
                K + +E++ +G+SP+ I++T++I  C  +   + A++
Sbjct: 580 RLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVK 621



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 6/226 (2%)

Query: 233  KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
            K R L  A+  Y        SP       ++D     G    +  ++ ++       N  
Sbjct: 962  KSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCT 1021

Query: 293  VFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            ++N L+N +  A + +    ++++M   G+  D+ SY I++   C AG        + ++
Sbjct: 1022 IYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQL 1081

Query: 351  KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
              +     L+ D+ TY+ ++     +K  + A+ +  +M   G+ PN  T++SLI     
Sbjct: 1082 LEMG----LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1137

Query: 411  AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            AG   +A  ++EE+L  G +PN    N L++    +   D A+  +
Sbjct: 1138 AGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAY 1183



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 268  ICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMA 325
            I G+  K   +++D+  Q +  +I  +  +++    A  L   L  ++ + ++G+  D+ 
Sbjct: 1032 IAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLI 1091

Query: 326  SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
            +YN+L+      G +   +E       ++ KG++  +++TY++++     A     A K+
Sbjct: 1092 TYNLLIDGL---GKSKRLEEAVSLFNEMQKKGIVP-NLYTYNSLILHLGKAGKAAEAGKM 1147

Query: 386  KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
             E++L+ G  PN  T+++LI   + +G  + A   +  M+  GC PN
Sbjct: 1148 YEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +LF N+   +GK  + + A++ Y+  K     P++     ++      G    ++ ++ +
Sbjct: 534 VLFINY---YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHE 590

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           L++  V+ +   +  ++   +   KF   ++++ +M +   + D+ + N L+     AG 
Sbjct: 591 LKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGR 650

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  I+ ++K +     L+    TY+T++         +  + + E+M  +   PN I
Sbjct: 651 GDEAWRIFYQLKEMN----LEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 706

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           T++++++     G V  A+ +   M   GC P+    N ++   V+  +++ AF +F
Sbjct: 707 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIF 763



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 140/345 (40%), Gaps = 47/345 (13%)

Query: 236 DLVSALRAYD-----------ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284
           D++ ALR+ D           A++K   +     C  ++++    G       +++ ++ 
Sbjct: 184 DVIHALRSADGPAEALERFRSAARKPRVAQTTASCNYMLELMRGHGRVGDMAEVFDVMQR 243

Query: 285 QNVTLNIYVFNSL---MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           Q V  N+  F ++   + V    L+        M++ G++ +  +YN L+     +G   
Sbjct: 244 QIVKANVGTFAAIFGGLGVEG-GLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDR 302

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A E+Y   + +   GV+   V TYS ++  F   +  +  L +  +M + GV PN  ++
Sbjct: 303 EALEVY---RVMMVDGVVP-SVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSY 358

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           +  I     A   ++A  +  +M   GC+P+     +L+Q   +A +   A  +F  W +
Sbjct: 359 TICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVF--WKM 416

Query: 462 SKTQVALGEDYDGNTDRISNM-------EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
            K+        D   DR++ +       ++ D QS+    N +    Y+           
Sbjct: 417 KKS--------DQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYND---------N 459

Query: 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
              Y  ++ A C     +    + +EM+  G+ P   S+  LI  
Sbjct: 460 VVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISG 504



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 58/323 (17%), Positives = 138/323 (42%), Gaps = 22/323 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P++    ++ID     G   ++  I+  L+  N+      +N+L+     +  +K  + +
Sbjct: 633 PDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHL 692

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M       ++ +YN +L   C  G    A ++   +  +  KG +  D+ +Y+T++ 
Sbjct: 693 LEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDM---LYSMTTKGCIP-DLSSYNTVIY 748

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE-MLQAGCE 430
                + +  A  +   M    + P+  T  +++ +    GL+++A+H+ ++  LQ G +
Sbjct: 749 GLVKEERYNEAFSIFCQMKKV-LIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSK 807

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
            +   C+ L++  ++    +++     +  ++ + + L + +         ++H  KQ  
Sbjct: 808 TDRSSCHSLMEGILKKAGIEKSIEF--AEIIASSGITLDDFF-----LCPLIKHLCKQKK 860

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNH 548
                   +     F K F     T  YN L+     +      + L  EM+ +G  P+ 
Sbjct: 861 A----LEAHELVKKF-KSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDE 915

Query: 549 ISWTILIDACGGSGNVEGALQCR 571
            ++ +L+DA G S  +E  L+ +
Sbjct: 916 FTYNLLLDAMGKSMRIEEMLKVQ 938



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 7/216 (3%)

Query: 253  SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
            +P++     IID     G        +  L    +  ++  +N L++    +  L+  + 
Sbjct: 1052 NPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVS 1111

Query: 311  VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            ++  MQK G++ ++ +YN L+     AG    A ++Y E   L  KG  K +VFTY+ ++
Sbjct: 1112 LFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEE---LLTKG-WKPNVFTYNALI 1167

Query: 371  KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            + ++ +     A      M+  G  PN+ T SS  ++    G V + +        A  E
Sbjct: 1168 RGYSVSGSTDSAYAAYGRMIVGGCLPNSSTDSSNCSSPEAVGTVRKQITSHRSYHNAK-E 1226

Query: 431  PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
            P ++    L + C+       A ++   W +    V
Sbjct: 1227 PTTKAWRWLSKGCLRRAAAGNAQQIADGWRMHNHSV 1262


>gi|298706415|emb|CBJ29411.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 125/286 (43%), Gaps = 21/286 (7%)

Query: 190 ELDEEFRI--------VQLCVNKPDVNLAIRYACIVP----RADILFCNF-VREFGKKRD 236
           E D+E ++        +  C N      A+     +P    R +++ CN  ++ +G+   
Sbjct: 37  EEDDEIKLDVVAYSAAITACANGGRWQEAVAILSDMPNVGVRPNVISCNAAIKAWGEAGQ 96

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
              AL       K   SP+     T I   G+ G   +++ +  ++    +   +  +NS
Sbjct: 97  WQHALSILRGMSKAGLSPDAISYNTAISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNS 156

Query: 297 LMNVNAH----DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
            +   A       +  + + K+M   GV  D  +YN L+ AC   G    A  +   +K 
Sbjct: 157 AIAAIARGGGGQWRQAVALVKHMSLAGVTPDSITYNSLIVACGKGGQWKQALSV---LKG 213

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           ++ +G L  D+  YS  +    +A  W+ ++ +  +  S G+TP+ + +++ + ACA+A 
Sbjct: 214 MKKQG-LSCDIIGYSAAISACGEAGQWEYSVGLLAEAKSLGITPDLVAYTAAVTACADAN 272

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
             ++A  L +EML AG  P++     L+ A     Q+ +A  +  S
Sbjct: 273 QRDKATFLLKEMLSAGIRPDAAAFTSLIAALGHDGQWTQAVEILES 318



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 104/258 (40%), Gaps = 54/258 (20%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M  LG+   + SY+I L AC   G     QE    ++ +E    +KLDV  YS  +   A
Sbjct: 1   MPGLGIRPSVESYSIGLTACAKGGRW---QEALVLLREMEEDDEIKLDVVAYSAAITACA 57

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           +   WQ A+ +  DM + GV PN I+ ++ I A   AG  + A+ +   M +AG  P++ 
Sbjct: 58  NGGRWQEAVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAI 117

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             N  + A   A Q ++A  L                       +S M            
Sbjct: 118 SYNTAISALGVAGQSEQAQEL-----------------------MSEM------------ 142

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACC----TDYYRVKALMNEMRTVGLSPNHIS 550
                        R   +PT  TYN  + A        + +  AL+  M   G++P+ I+
Sbjct: 143 ------------SRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSLAGVTPDSIT 190

Query: 551 WTILIDACGGSGNVEGAL 568
           +  LI ACG  G  + AL
Sbjct: 191 YNSLIVACGKGGQWKQAL 208



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 6/182 (3%)

Query: 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADM 324
           G  G + ++ A+ + +    VT +   +NSL+         K  L V K M+K G+  D+
Sbjct: 164 GGGGQWRQAVALVKHMSLAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDI 223

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
             Y+  + AC  AG    +  +  E K L     +  D+  Y+  V   ADA     A  
Sbjct: 224 IGYSAAISACGEAGQWEYSVGLLAEAKSLG----ITPDLVAYTAAVTACADANQRDKATF 279

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           + ++MLSAG+ P+   ++SLI A  + G   QA+ + E M + G   N+   N L+ +  
Sbjct: 280 LLKEMLSAGIRPDAAAFTSLIAALGHDGQWTQAVEILESMPKMGAPRNAMVYNALITSWA 339

Query: 445 EA 446
            A
Sbjct: 340 NA 341


>gi|440793601|gb|ELR14780.1| PPR repeat/pentatricopeptide repeat domain containing protein,
           partial [Acanthamoeba castellanii str. Neff]
          Length = 610

 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/352 (20%), Positives = 152/352 (43%), Gaps = 52/352 (14%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----DLKFT 308
           P++++   ++   G  G+  K++  + +++   +T  ++ +NS++   A       ++  
Sbjct: 116 PDVFVLTALVSALGRAGEVGKAQYFFNEIQRLGMTPTLHSYNSMIMAFARAGRIDKVRDM 175

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           LEV   M+  G+  D+ +Y  ++   C AG    A + + E++ +  +  LK+    YS 
Sbjct: 176 LEV---MKHKGIEPDVRTYTEIINNSCKAGRVAEAYQTFIEMQDVGVQPDLKV----YSA 228

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F+       A ++KE+M + G+  + IT+S +++  A    + +   + E M +  
Sbjct: 229 LIAGFSHVGDHLKAQQLKEEMEALGLEASMITYSGMLSGLARNRQLTEMERVIEAMKKRN 288

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV------------ALGEDYDGNT 476
             PN++    L+    +    D+AF + ++    K +             A  +D +   
Sbjct: 289 MVPNARALGDLINRMSDTMPMDQAFNMAQALVQKKVEANADVWHALLRVCAKADDVEKGI 348

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHY----SSFDK---------------RFSFKPTTTT 517
             +  M        +++P  V  S Y     +F K               +   KP  + 
Sbjct: 349 RILDVMR-------SHSPELVSASSYCVLIDTFAKAGRVSRGATLLAHMRKHKIKPDVSI 401

Query: 518 YNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           YN+ ++     T Y +   +   M+  G+ P+H +++ILIDA G +G  E A
Sbjct: 402 YNVFIEGAMRETGYSKALQVFELMKAEGVRPSHTTFSILIDAAGHAGRPEEA 453



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 116/534 (21%), Positives = 206/534 (38%), Gaps = 86/534 (16%)

Query: 50  PTVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVE--SVVVSEGNVSK- 106
           P + S+  ALL  ++R      D   D+ +++ + G + +  ++    S +   G V K 
Sbjct: 83  PFICSALIALLGKLQR-----TDAALDLVTRMTQQGYVPDVFVLTALVSALGRAGEVGKA 137

Query: 107 ---FASMLSLEMVA------SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF-K 156
              F  +  L M        S I+   R GRID V  +L+ +   G+ P    D   + +
Sbjct: 138 QYFFNEIQRLGMTPTLHSYNSMIMAFARAGRIDKVRDMLEVMKHKGIEP----DVRTYTE 193

Query: 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV--------KELDEEFRIVQLCVNKPDVN 208
           ++ N C+    +   + F+ + +V  +  L V          + +  +  QL      + 
Sbjct: 194 IINNSCKAGRVAEAYQTFIEMQDVGVQPDLKVYSALIAGFSHVGDHLKAQQLKEEMEALG 253

Query: 209 LAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268
           L            I +   +    + R L    R  +A KK    PN    R + D+   
Sbjct: 254 LEASM--------ITYSGMLSGLARNRQLTEMERVIEAMKKRNMVPN---ARALGDLINR 302

Query: 269 CGDYMKSRAIY---EDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGV-MA 322
             D M     +   + L  + V  N  V+++L+ V   A D++  + +   M+     + 
Sbjct: 303 MSDTMPMDQAFNMAQALVQKKVEANADVWHALLRVCAKADDVEKGIRILDVMRSHSPELV 362

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
             +SY +L+     AG       +   ++    K  +K DV  Y+  ++       +  A
Sbjct: 363 SASSYCVLIDTFAKAGRVSRGATLLAHMR----KHKIKPDVSIYNVFIEGAMRETGYSKA 418

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           L+V E M + GV P+  T+S LI+A  +AG  E+A   F  M      P++   N L++A
Sbjct: 419 LQVFELMKAEGVRPSHTTFSILIDAAGHAGRPEEAEAHFAAM-GTSPRPDTNNYNSLIEA 477

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
                Q D+A R+  S  L  T      D  G+TD                         
Sbjct: 478 LARNGQLDKAERVLDSL-LRHTHTT---DNRGSTD------------------------- 508

Query: 503 SSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTIL 554
              D     +PT  +++ L+  C    D  R + L  +MR   ++P+ I+   L
Sbjct: 509 ---DHVGLARPTAKSFSSLLGFCLERKDVVRARRLAEKMRRASVAPDAIAQRQL 559


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 142/327 (43%), Gaps = 14/327 (4%)

Query: 250 HLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305
            +  PN+    T+++  G+C  G  +++ A+ + +    +  N   + ++++      D 
Sbjct: 75  QMCKPNVVTFTTLMN--GLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 132

Query: 306 KFTLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
              L + + M++L  +  D+  Y+ ++      G    AQ ++ E   ++ KG+   D+ 
Sbjct: 133 VSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIE---MQDKGIFP-DIV 188

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TYS ++  F  +  W  A ++ ++ML   ++P+ +T+S LINA    G +  A  L +EM
Sbjct: 189 TYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEM 248

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           + +G  PN   CN LL    ++ +   A  +F++   S   +     ++G    +     
Sbjct: 249 ISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNI 308

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTV 542
                I           Y     R    P T TY+ ++   C      +A  + + M + 
Sbjct: 309 LISGLINEGKFLEAEELYEEMPHR-GIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSK 367

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
             SPN +++  LI     +G V+  L+
Sbjct: 368 SFSPNIVTFNTLITGYCKAGMVDDGLE 394



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 17/194 (8%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SP++     +I+     GD   ++ + +++ S  V  N+   N+L++   ++  LK  LE
Sbjct: 219 SPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALE 278

Query: 311 VYKNMQKL-----------GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           ++K MQK            GV  D+ +YNIL+      G  + A+E+Y E+ H   +G++
Sbjct: 279 MFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH---RGIV 335

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             D  TYS+++           A ++ + M S   +PN +T+++LI     AG+V+  + 
Sbjct: 336 P-DTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLE 394

Query: 420 LFEEMLQAGCEPNS 433
           LF EM + G   N+
Sbjct: 395 LFCEMGRRGIVANA 408



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 94/201 (46%), Gaps = 11/201 (5%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G C  G + +++ + +++  + ++ ++  F+ L+N  V   DL    ++ + M   GV  
Sbjct: 196 GFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCP 255

Query: 323 DMASYNILLKACCLAGNTVLAQEIYG-------EVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           ++ + N LL   C +G    A E++        ++    A   ++ DV TY+ ++    +
Sbjct: 256 NVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLIN 315

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
              +  A ++ E+M   G+ P+T+T+SS+IN       +++A  +F+ M      PN   
Sbjct: 316 EGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVT 375

Query: 436 CNILLQACVEACQFDRAFRLF 456
            N L+    +A   D    LF
Sbjct: 376 FNTLITGYCKAGMVDDGLELF 396



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 29/256 (11%)

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
           L +  D+ S+NIL+K  C       A   +G++  L     L     T++T++       
Sbjct: 9   LQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTL----VTFNTLLHGLCVED 64

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
               AL    D+      PN +T+++L+N     G V +A+ L + M++ G +PN     
Sbjct: 65  RVSEAL----DLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYG 120

Query: 438 ILLQACVEACQFDRAFRLFR---SWTLSKTQVALGEDYDGNTDRI-SNMEHKDKQSITNT 493
            ++    +      A  L R     +  K  V +   Y    D +  +  H D Q++   
Sbjct: 121 TIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVI---YSAIIDGLWKDGRHTDAQNL--- 174

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISW 551
             F+       F       P   TY+ ++   C+   +   + L+ EM    +SP+ +++
Sbjct: 175 --FIEMQDKGIF-------PDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTF 225

Query: 552 TILIDACGGSGNVEGA 567
           + LI+A    G++  A
Sbjct: 226 SGLINALVKEGDLNSA 241


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 186/469 (39%), Gaps = 61/469 (13%)

Query: 114 EMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNEC---QRLLDS-G 169
           +MV +G+  S+     + V+G L +  +L  A   LF+    K L+ +      L+D  G
Sbjct: 241 DMVVAGLSPSVFT--YNMVIGCLAREGDLEAAR-SLFEEMKAKGLRPDIVTYNSLIDGYG 297

Query: 170 EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229
           +V M  G + V EE +    E              PDV   I Y  ++      FC F R
Sbjct: 298 KVGMLTGAVSVFEEMKDAGCE--------------PDV---ITYNSLIN----CFCKFER 336

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
                  +  A       K+    PN+    T+ID     G  +++   + D+    +  
Sbjct: 337 -------IPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQP 389

Query: 290 NIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N + + SL++ N    DL    ++   MQ+ GV  ++ +Y  LL   C  G    A+E++
Sbjct: 390 NEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELF 449

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
           G +  L+A   L   +  Y+++   +  AK  + A+ + E+M    + P+ + + + I  
Sbjct: 450 GAL--LKAGWTLNQQI--YTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWG 505

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKT 464
                 +E +M +  EM+  G   NS     L+ A  +  +   A  L +      +  T
Sbjct: 506 LCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKIT 565

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
            V  G   DG   +I  ++   +              Y     R   +P    Y  L+  
Sbjct: 566 VVTYGVLIDGLC-KIGLVQQAVR--------------YFDHMTRNGLQPNIMIYTALIDG 610

Query: 525 CCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            C +      K L NEM   G+SP+ + +T LID     GN   AL  R
Sbjct: 611 LCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLR 659



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 118/281 (41%), Gaps = 55/281 (19%)

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           VF++L NV  +   L+   + +  M K  V+  + S N LL     +    LA   +   
Sbjct: 183 VFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFF--- 239

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K +   G L   VFTY+ ++   A     + A  + E+M + G+ P+ +T++SLI+    
Sbjct: 240 KDMVVAG-LSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGK 298

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G++  A+ +FEEM  AGCEP+    N L+      C+F+R  + F              
Sbjct: 299 VGMLTGAVSVFEEMKDAGCEPDVITYNSLINC---FCKFERIPQAF-------------- 341

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
                 + +  M+ +  Q                        P   TY+ L+ A C    
Sbjct: 342 ------EYLHGMKQRGLQ------------------------PNVVTYSTLIDAFCKAGM 371

Query: 531 RVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            ++A     +M  VGL PN  ++T LIDA    G++  A +
Sbjct: 372 LLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFK 412



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 90/181 (49%), Gaps = 6/181 (3%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           + ++D+    ++ +++ +N ++   A   DL+    +++ M+  G+  D+ +YN L+   
Sbjct: 237 SFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGY 296

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A  ++ E+K    +     DV TY++++  F   +    A +    M   G+
Sbjct: 297 GKVGMLTGAVSVFEEMKDAGCEP----DVITYNSLINCFCKFERIPQAFEYLHGMKQRGL 352

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PN +T+S+LI+A   AG++ +A   F +M++ G +PN      L+ A  +    + AF+
Sbjct: 353 QPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFK 412

Query: 455 L 455
           L
Sbjct: 413 L 413



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 104/250 (41%), Gaps = 46/250 (18%)

Query: 245 DASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302
           + +KK+L  P++ +  T   + G+C   +   S A+  ++    +T N Y++ +L++   
Sbjct: 486 EMNKKNLK-PDLLLYGT--KIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYF 542

Query: 303 HDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
              K T  + + + MQ LG+   + +Y +L+   C  G   L Q+      H+   G L+
Sbjct: 543 KVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIG---LVQQAVRYFDHMTRNG-LQ 598

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA------------- 407
            ++  Y+ ++         + A  +  +ML  G++P+ + ++SLI+              
Sbjct: 599 PNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSL 658

Query: 408 -------------CANA---------GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
                        CA           G V+ A  L +EML+ G  P+   C  LL+   E
Sbjct: 659 RNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYE 718

Query: 446 ACQFDRAFRL 455
               + A  L
Sbjct: 719 LGDINEALAL 728


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 156/342 (45%), Gaps = 33/342 (9%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           P++    T+I      G    + A Y ++     + N+  +N+L+ ++    KFT  + V
Sbjct: 358 PDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAV 417

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           + +++  G + D+ ++N LL    + G   L  E+ G  K ++  G +  +  TY +++ 
Sbjct: 418 FDDLRSAGYVPDVVTWNTLL---SVFGQNGLDSEVSGVFKEMKKAGYIP-ERDTYVSLIS 473

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            ++    +  A+++ + M+ AG+ P+  T++++++A A  G  EQA  LF EM+   C+P
Sbjct: 474 SYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKP 533

Query: 432 NSQCCNILLQACVEACQFDR---------AFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
           +    + LL A   A + D+         A R+ R   L KT V +    +   +     
Sbjct: 534 DELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAF 593

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDK---------------RFSFKPTTTTYNILMK--AC 525
           +   ++  +   N + N+  S + K                 S   +  TYN LM   + 
Sbjct: 594 QELRRRRCSLDINVL-NAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSR 652

Query: 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             D  + ++++ E+++ G+ P+  S+  +I A G  G ++ A
Sbjct: 653 LGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEA 694



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/315 (19%), Positives = 128/315 (40%), Gaps = 56/315 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTL 309
           +P+      ++      G +  + A+++ +    V   +  +N + +  +      K  +
Sbjct: 181 APDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVV 240

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +  +M++ G+  D  +YN L+  C   G    A +++ E+K   A G  + D  T++++
Sbjct: 241 ALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMK---AAG-FEPDKVTFNSL 296

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           + V+  A+  + A+ V + M +AG TP+ +T++SLI+A    GL+E+A+ L +EM   G 
Sbjct: 297 LDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGM 356

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +P+      L+       + D A   +                                 
Sbjct: 357 KPDVVTYTTLISGLDRVGKIDAALATYSEMV----------------------------- 387

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPN 547
                             R    P   TYN L+K       +  + A+ +++R+ G  P+
Sbjct: 388 ------------------RNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPD 429

Query: 548 HISWTILIDACGGSG 562
            ++W  L+   G +G
Sbjct: 430 VVTWNTLLSVFGQNG 444



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 93/188 (49%), Gaps = 6/188 (3%)

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKN 314
           ++ +T++ V     +  ++   +++LR +  +L+I V N+++++   +  +K   EV   
Sbjct: 571 WLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSL 630

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M +  +    A+YN L+      G+    + I  E+K       ++ D ++Y+T++  + 
Sbjct: 631 MMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIK----SSGMRPDRYSYNTVIYAYG 686

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                + A ++  +M  +GV P+ +T++  I +     + E+A+ L   ++  GC PN +
Sbjct: 687 RKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNER 746

Query: 435 CCNILLQA 442
             N +LQ 
Sbjct: 747 TFNSILQG 754



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 94/186 (50%), Gaps = 6/186 (3%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K + + ED+ ++ +  + ++  +L+ VN   ++L  T + ++ +++     D+   N+L 
Sbjct: 553 KMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDI---NVLN 609

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
               + G   + +++  EV  L  +  +     TY++++ +++     +    +  ++ S
Sbjct: 610 AMVSIYGKNKMVKKV-EEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIKS 668

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           +G+ P+  +++++I A    G +++A  LF EM  +G +P+    NI +++ V    F+ 
Sbjct: 669 SGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEE 728

Query: 452 AFRLFR 457
           A  L R
Sbjct: 729 AIDLVR 734



 Score = 42.4 bits (98), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 91/207 (43%), Gaps = 6/207 (2%)

Query: 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
           YA  + R + L    V    K  +L    +A+   ++   S ++ +   ++ + G     
Sbjct: 562 YAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMV 621

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNIL 330
            K   +   +   ++  +   +NSLM++ +   D +    +   ++  G+  D  SYN +
Sbjct: 622 KKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTV 681

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           + A    G    A  ++ E+K     GV K D+ TY+  +K +     ++ A+ +   ++
Sbjct: 682 IYAYGRKGQMKEASRLFSEMK---CSGV-KPDIVTYNIFIKSYVANIMFEEAIDLVRYLV 737

Query: 391 SAGVTPNTITWSSLINACANAGLVEQA 417
           + G  PN  T++S++   +  G + +A
Sbjct: 738 TQGCRPNERTFNSILQGYSRHGRMVEA 764


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 142/327 (43%), Gaps = 14/327 (4%)

Query: 250 HLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305
            +  PN+    T+++  G+C  G  +++ A+ + +    +  N   + ++++      D 
Sbjct: 75  QMCKPNVVTFTTLMN--GLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 132

Query: 306 KFTLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
              L + + M++L  +  D+  Y+ ++      G    AQ ++ E   ++ KG+   D+ 
Sbjct: 133 VSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIE---MQDKGIFP-DIV 188

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TYS ++  F  +  W  A ++ ++ML   ++P+ +T+S LINA    G +  A  L +EM
Sbjct: 189 TYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEM 248

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           + +G  PN   CN LL    ++ +   A  +F++   S   +     ++G    +     
Sbjct: 249 ISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNI 308

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTV 542
                I           Y     R    P T TY+ ++   C      +A  + + M + 
Sbjct: 309 LISGLINEGKFLEAEELYEEMPHR-GIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSK 367

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
             SPN +++  LI     +G V+  L+
Sbjct: 368 SFSPNIVTFNTLITGYCKAGMVDDGLE 394



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 17/194 (8%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SP++     +I+     GD   ++ + +++ S  V  N+   N+L++   ++  LK  LE
Sbjct: 219 SPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALE 278

Query: 311 VYKNMQKL-----------GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           ++K MQK            GV  D+ +YNIL+      G  + A+E+Y E+ H   +G++
Sbjct: 279 MFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH---RGIV 335

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             D  TYS+++           A ++ + M S   +PN +T+++LI     AG+V+  + 
Sbjct: 336 P-DTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLE 394

Query: 420 LFEEMLQAGCEPNS 433
           LF EM + G   N+
Sbjct: 395 LFCEMGRRGIVANA 408



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 94/201 (46%), Gaps = 11/201 (5%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G C  G + +++ + +++  + ++ ++  F+ L+N  V   DL    ++ + M   GV  
Sbjct: 196 GFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCP 255

Query: 323 DMASYNILLKACCLAGNTVLAQEIYG-------EVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           ++ + N LL   C +G    A E++        ++    A   ++ DV TY+ ++    +
Sbjct: 256 NVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLIN 315

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
              +  A ++ E+M   G+ P+T+T+SS+IN       +++A  +F+ M      PN   
Sbjct: 316 EGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVT 375

Query: 436 CNILLQACVEACQFDRAFRLF 456
            N L+    +A   D    LF
Sbjct: 376 FNTLITGYCKAGMVDDGLELF 396



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/189 (19%), Positives = 94/189 (49%), Gaps = 11/189 (5%)

Query: 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           + A  A++  +  + + N+ I   I +     G ++++  +YE++  + +  +   ++S+
Sbjct: 290 IDATHAFNGVEPDVQTYNILISGLINE-----GKFLEAEELYEEMPHRGIVPDTVTYSSM 344

Query: 298 MN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           +N       L    +++ +M       ++ ++N L+   C AG      E++ E+     
Sbjct: 345 INGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGR--- 401

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +G++  +  TY T+++ F        +L + ++M+S+GV P+TIT  +++    +   ++
Sbjct: 402 RGIVA-NAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELK 460

Query: 416 QAMHLFEEM 424
           +A+ + EE+
Sbjct: 461 KALAMLEEL 469



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 106/256 (41%), Gaps = 29/256 (11%)

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
           L +  D+ S+NIL+K  C       A   +G++  L     L     T++T++       
Sbjct: 9   LQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTL----VTFNTLLHGLCVED 64

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
               AL    D+      PN +T+++L+N     G V +A+ L + M++ G +PN     
Sbjct: 65  RVSEAL----DLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYG 120

Query: 438 ILLQACVEACQFDRAFRLFRSW-TLS--KTQVALGEDYDGNTDRI-SNMEHKDKQSITNT 493
            ++    +      A  L R    LS  K  V +   Y    D +  +  H D Q++   
Sbjct: 121 TIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVI---YSAIIDGLWKDGRHTDAQNL--- 174

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISW 551
             F+       F       P   TY+ ++   C+   +   + L+ EM    +SP+ +++
Sbjct: 175 --FIEMQDKGIF-------PDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTF 225

Query: 552 TILIDACGGSGNVEGA 567
           + LI+A    G++  A
Sbjct: 226 SGLINALVKEGDLNSA 241


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 145/339 (42%), Gaps = 36/339 (10%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SP  Y    +ID+ G    +  +  + + ++++NV + +  F+ L+   V A      + 
Sbjct: 147 SPQPY--NEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEAVH 204

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            +  M+  G  AD+ +++ ++   C     V AQ  +  +KH       + DV  Y+++V
Sbjct: 205 AFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKH-----KFEPDVIVYTSLV 259

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +  A     A  V  +M  AG++PN  T+S +I+A   +G + +A  +F EML AGC 
Sbjct: 260 HGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCN 319

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL-----------GEDYDGNTDRI 479
           PNS   N L++  + A + ++  +++      +    L            +D  G   ++
Sbjct: 320 PNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHCKDDNLGEAIKV 379

Query: 480 SNMEHKDKQSITNTPNFVP-----------NSHYSSFD--KRFSFKPTTTTYNILMK--A 524
            N   K+     N  +F P           N  +  F   K    KP T TYNILM+  A
Sbjct: 380 LNSMAKN-DCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMFA 438

Query: 525 CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
                  +  L  EM    + PN  ++  LI    G G+
Sbjct: 439 VPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGH 477



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 113/246 (45%), Gaps = 11/246 (4%)

Query: 213 YACIVPRADIL-FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271
           Y C    ADI+ F N +    KKR  V A   +D + KH   P++ +  +++      GD
Sbjct: 212 YGC---NADIIAFSNVISILCKKRRAVEAQSFFD-NLKHKFEPDVIVYTSLVHGWCRAGD 267

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNI 329
             ++ +++ +++   ++ N+Y ++ +++      + T   +V+  M   G   +  ++N 
Sbjct: 268 ISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNN 327

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           L++    AG T    ++Y ++K L        D+ TY+ +++          A+KV   M
Sbjct: 328 LIRVHLRAGRTEKVLQVYNQMKRLRCAA----DLITYNFLIETHCKDDNLGEAIKVLNSM 383

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
                TPN  +++ +    A +  V  A  +F  M + GC+PN+   NIL++        
Sbjct: 384 AKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMFAVPKSA 443

Query: 450 DRAFRL 455
           D  F+L
Sbjct: 444 DMIFKL 449



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 6/238 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I++ + V  + +  D+  A   +   K    SPN+Y    +ID     G   ++  ++ +
Sbjct: 253 IVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAE 312

Query: 282 LRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +       N   FN+L+ V+  A   +  L+VY  M++L   AD+ +YN L++  C   N
Sbjct: 313 MLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHCKDDN 372

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++   +    AK     +  +++ I +  A ++    A ++   M   G  PNT+
Sbjct: 373 LGEAIKVLNSM----AKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTV 428

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           T++ L+   A     +    L +EM +   EPN      L+        ++ A+  FR
Sbjct: 429 TYNILMRMFAVPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWNHAYMFFR 486



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/237 (18%), Positives = 111/237 (46%), Gaps = 7/237 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   VR + +      A+ A++  + +  + ++     +I +       +++++ +++
Sbjct: 184 VTFSMLVRRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDN 243

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           L+ +    ++ V+ SL++    A D+     V++ M+  G+  ++ +Y+I++ A C +G 
Sbjct: 244 LKHK-FEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQ 302

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A +++ E+  L+A      +  T++ +++V   A   +  L+V   M       + I
Sbjct: 303 ITRAHDVFAEM--LDAG--CNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLI 358

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           T++ LI        + +A+ +   M +  C PN+   N + +   ++   + A R+F
Sbjct: 359 TYNFLIETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMF 415


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 157/360 (43%), Gaps = 33/360 (9%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295
           L SA R +D+      +PN+Y    +I  +CG  G   ++ +I  D+R      N+  +N
Sbjct: 131 LTSARRFFDSMLSDGVAPNVYTYNILIRALCGR-GHRKEALSILRDMRGAGCGPNVVTYN 189

Query: 296 SLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           +L+     A ++     +   M   G+  ++ ++N ++   C AG    A++++ E+   
Sbjct: 190 TLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEM--- 246

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
             +  L  D  +Y+T+V  +  A     AL V  +M   G+ P+ +T++SLI+    AG 
Sbjct: 247 -MREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGN 305

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF---RLFRSWTLSKTQV---A 467
           +E A+ L  +M + G + N      L+    +    D A    R  R   +  + V   A
Sbjct: 306 LEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNA 365

Query: 468 LGEDY------DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK--------- 512
           L   Y      D   + +  ME K  +    T + + +++  + D   +F+         
Sbjct: 366 LINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKG 425

Query: 513 --PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             P   TY+ L++  C +     A  L   M  +GL P+  ++T LID     GNVE AL
Sbjct: 426 VLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERAL 485



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 6/204 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++    ++I V    G+   +  +   +R + + +N   F +L++       L   L  
Sbjct: 288 PDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLA 347

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M++  +   +  YN L+   C+ G    A+E+  E   +EAKG LK DV TYSTI+ 
Sbjct: 348 VRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHE---MEAKG-LKPDVVTYSTIIS 403

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +        A ++ + ML  GV P+ IT+SSLI        +  A  LF+ M++ G +P
Sbjct: 404 AYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQP 463

Query: 432 NSQCCNILLQACVEACQFDRAFRL 455
           +      L+    +    +RA  L
Sbjct: 464 DEFTYTSLIDGHCKEGNVERALSL 487



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 135/299 (45%), Gaps = 19/299 (6%)

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R   +  ++  +N+L+N       +    E+   M+  G+  D+ +Y+ ++ A C   +
Sbjct: 351 MRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCD 410

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A E+    + +  KGVL  D  TYS++++V  + K    A  + ++M+  G+ P+  
Sbjct: 411 THSAFELN---QQMLEKGVLP-DAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEF 466

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR-LFRS 458
           T++SLI+     G VE+A+ L ++M++AG  P+    ++L+    ++ +   A + LF+ 
Sbjct: 467 TYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKL 526

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSI------TNTPNFVPNSHYSSFDKRFSFK 512
           +   +  +     YD         E K   ++          N     + S  D+ ++  
Sbjct: 527 Y--HEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLD 584

Query: 513 PTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              + Y++L+   C     +KAL    +M   G +PN  S   LI     +G V  A Q
Sbjct: 585 --GSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQ 641



 Score = 38.5 bits (88), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 34/242 (14%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           ++P A I + + +R   +++ L  A   +    K    P+ +   ++ID  G C  G+  
Sbjct: 426 VLPDA-ITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLID--GHCKEGNVE 482

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--------VNAHDLKFTL----EVYKNMQKLGVM 321
           ++ ++++ +    V  ++  ++ L+N        + A  L F L     +  N +   +M
Sbjct: 483 RALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALM 542

Query: 322 -----ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
                A++ S   LLK  C+ G    A ++Y  +          LD   YS ++     A
Sbjct: 543 HCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRN----WNLDGSVYSVLIHGHCRA 598

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                AL   + ML  G  PN+ +  SLI      G+V +A  + +++L         CC
Sbjct: 599 GNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLL--------NCC 650

Query: 437 NI 438
           ++
Sbjct: 651 SL 652


>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 109/238 (45%), Gaps = 13/238 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  +    K   L  AL  Y   ++   SP+ +    II+  G  G    +  ++ +
Sbjct: 459 VTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCE 518

Query: 282 LRSQNVTLNIYVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q    N+  +N +  +   A +    LE+Y++MQ  G   D  +Y+I+++     G+
Sbjct: 519 MVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGH 578

Query: 340 TVLAQEIYGEVKH---LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
              A+ I+ E+K    +  + V  L V  +  +  V    +W+Q        ML+AG+ P
Sbjct: 579 LEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQA-------MLNAGLCP 631

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-CQFDRAF 453
           N  T +SL++A      +  A +L + ML+ G +P+ Q   +LL  C EA   FD  F
Sbjct: 632 NVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLLLSCCTEARSSFDMGF 689



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 113/250 (45%), Gaps = 12/250 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  +G+   L  A+  +D  ++    P+     T+ID+    G    +  +Y+ 
Sbjct: 424 VTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQK 483

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++  +++ + + ++ ++N    A  L    +++  M   G + ++ +YNI++     A N
Sbjct: 484 MQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARN 543

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A E+Y ++++       + D  TYS +++V       + A  +  +M      P+  
Sbjct: 544 YPTALELYRDMQN----AGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEP 599

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +  L++     G VE++   ++ ML AG  PN   CN LL A      F R  RL  ++
Sbjct: 600 VYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSA------FLRVHRLSDAY 653

Query: 460 TLSKTQVALG 469
            L ++ + LG
Sbjct: 654 NLLQSMLRLG 663



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 127/297 (42%), Gaps = 38/297 (12%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           T++ + G    +     +  ++       N+  +N L++    A+ L   + V+  MQ+ 
Sbjct: 393 TMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEA 452

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  +Y  L+     AG   +A  +Y +++       L  D FTYS I+     A  
Sbjct: 453 GCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAH----LSPDTFTYSVIINCLGKAGH 508

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A K+  +M+  G  PN +T++ +I   A A     A+ L+ +M  AG +P+    +I
Sbjct: 509 LTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSI 568

Query: 439 LLQACVEACQFDRAFRLF-----RSWTLSKTQVALGEDYDGNTDRISNMEHKDK--QSIT 491
           +++        + A  +F     ++W   +    L  D  G   ++ N+E   +  Q++ 
Sbjct: 569 VMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWG---KVGNVEKSWEWYQAML 625

Query: 492 NT---PNFVP--NSHYSSFDK---------------RFSFKPTTTTYNILMKACCTD 528
           N    PN VP  NS  S+F +               R   +P+  TY +L+ +CCT+
Sbjct: 626 NAGLCPN-VPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLLL-SCCTE 680



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 36/228 (15%)

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           L+ +   K D  TY+T+V +   A+ +    K+  +M+  G  PN +T++ LI++   A 
Sbjct: 378 LKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRAN 437

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            + +A+ +F+ M +AGC+P+      L+    +A   D A  +++               
Sbjct: 438 YLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQ--------------- 482

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPN-----SHYSSFDKRF------SFKPTTTTYNIL 521
                    M+       T T + + N      H +S  K F         P   TYNI+
Sbjct: 483 --------KMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIM 534

Query: 522 --MKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             ++A   +Y     L  +M+  G  P+ ++++I+++  G  G++E A
Sbjct: 535 IALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEA 582


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 125/254 (49%), Gaps = 9/254 (3%)

Query: 211 IRYACIVPRADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269
           +R + I P  DI+  N  +    ++ +L  A++ Y+    H   P+++    +I V G C
Sbjct: 285 VRRSGIQP--DIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRC 342

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASY 327
           G   ++  +++DL S+    +   +NSL+   A +  +    E+ ++M K+G   D  +Y
Sbjct: 343 GMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTY 402

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N ++      G   LA ++Y ++K L  +     D  TY+ ++     A   + A +V  
Sbjct: 403 NTIIHMYGKRGQHDLAFQLYSDMK-LSGRSP---DAVTYTVLIDSLGKANMIKEAAEVMS 458

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +ML+A V P   T+S+LI   A AG   +A   F+ ML++G +P+    +++L   +   
Sbjct: 459 EMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFN 518

Query: 448 QFDRAFRLFRSWTL 461
           +  +A +L++   L
Sbjct: 519 ESGKAMKLYQEMVL 532



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 131/289 (45%), Gaps = 25/289 (8%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           D M+SR    DL S N  +N  + +  M  N       +E+   +++ G+  D+ +YN L
Sbjct: 246 DLMRSRGCEPDLVSFNTLINARLKSGTMVTN-----LAIELLNEVRRSGIQPDIITYNTL 300

Query: 331 LKACCLAGNTVLAQEIYGE-VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           + AC    N   A ++Y + V H       + D++TY+ ++ V+      + A ++ +D+
Sbjct: 301 ISACSRESNLEEAVKVYNDMVAHR-----CQPDLWTYNAMISVYGRCGMSREAGRLFKDL 355

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
            S G  P+ +T++SL+ A A  G V++   + E+M++ G   +    N ++    +  Q 
Sbjct: 356 ESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQH 415

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
           D AF+L+    LS            + D ++     D     N             + R 
Sbjct: 416 DLAFQLYSDMKLSGR----------SPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAR- 464

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILID 556
             KPT  T++ L+        RV+A    + M   G+ P+H+++++++D
Sbjct: 465 -VKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLD 512



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/426 (21%), Positives = 165/426 (38%), Gaps = 72/426 (16%)

Query: 207  VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266
            + LAI   C + R ++L  + +  +G     + A    D  ++H S  +  I   +I + 
Sbjct: 593  LRLAISQGCELDRENLL--SILGSYGSSGRHLEARELLDFLREHSSGSHQLINEALIIM- 649

Query: 267  GICGDYMKSRAIYEDLRSQNVTL---NIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVM 321
             +C  +    A+ E  ++++  L   +  ++ SL+     +  F    +++ +M+  GV 
Sbjct: 650  -LCKAHQLGDALREYGKARDFGLFCGSFTMYESLLLCCEENELFAEASQIFSDMRFYGVE 708

Query: 322  ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
                 Y  ++   C  G    A  +   +   E KG+L  DV  ++ +++ +   K WQ 
Sbjct: 709  PSDHLYRSMVVTYCKMGFPETAHYL---IDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQK 765

Query: 382  ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
            A  +   +       +   W++LI+A A +G  E+A  +F  M++ G  P     N L+Q
Sbjct: 766  AESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQ 825

Query: 442  ACVEACQFDRAFRLFR-----SWTLSKTQVALGED--------------YDG-------- 474
            A +   + D  + + +      + +SK+ + L  D              Y G        
Sbjct: 826  ALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFP 885

Query: 475  -------------NTDRISNME----------HKDKQSITNT--------PNFVPNSHYS 503
                            R+ ++E           K   SI N+         +F       
Sbjct: 886  TMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVY 945

Query: 504  SFDKRFSFKPTTTTYNILMKACCTDYYRVK--ALMNEMRTVGLSPNHISWTILIDACGGS 561
               +    KP   TYN L+   C D    +  +LM+EMR VGL P   ++  LI A G  
Sbjct: 946  QLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKL 1005

Query: 562  GNVEGA 567
              VE A
Sbjct: 1006 QMVEQA 1011



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 131/314 (41%), Gaps = 26/314 (8%)

Query: 262  IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLG 319
            ++D     G+  + + IY+ +++      ++++  ++ + A    ++    +   M+   
Sbjct: 858  MLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAR 917

Query: 320  VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
               D++ +N +LK     G+     +  G+V  L  +  LK D  TY+T++ ++   +  
Sbjct: 918  FKPDLSIWNSVLKLYTGIGDF----KKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRP 973

Query: 380  QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
            +  L +  +M   G+ P   T+ SLI+A     +VEQA  LFE +L   C+ +    +I+
Sbjct: 974  EEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIM 1033

Query: 440  LQACVEACQFDRAFRLFR-SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
            +             ++FR S   SK +  LG   +   +      H    S + +    P
Sbjct: 1034 M-------------KMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQ--P 1078

Query: 499  NSHYSSFD--KRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTIL 554
                   D  K      +T  Y+ ++ A     D+      + EM+  GL P+H  WT  
Sbjct: 1079 EEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCF 1138

Query: 555  IDACGGSGNVEGAL 568
            + A   S +   A+
Sbjct: 1139 VRAASLSQHTSEAI 1152



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 108/261 (41%), Gaps = 34/261 (13%)

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           A    LA EI+   +      V       Y+ ++ V+A    +    ++ + M S G  P
Sbjct: 201 ANQEALAVEIFARAEAASGNTVQ-----VYNAMMGVYARTGRFTKVQELLDLMRSRGCEP 255

Query: 397 NTITWSSLINACANAG--LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           + +++++LINA   +G  +   A+ L  E+ ++G +P+    N L+ AC      + A +
Sbjct: 256 DLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVK 315

Query: 455 LFRSWTLSKTQVALGEDYDG--------NTDRISNMEHKDKQSITNTPNFVP-NSHYSSF 505
           ++      + Q  L   Y+            R +    KD +S    P+ V  NS   +F
Sbjct: 316 VYNDMVAHRCQPDLW-TYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAF 374

Query: 506 DK---------------RFSFKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSPNH 548
            +               +  F     TYN  I M      +     L ++M+  G SP+ 
Sbjct: 375 AREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDA 434

Query: 549 ISWTILIDACGGSGNVEGALQ 569
           +++T+LID+ G +  ++ A +
Sbjct: 435 VTYTVLIDSLGKANMIKEAAE 455



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 82/177 (46%), Gaps = 6/177 (3%)

Query: 254  PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
            P++ I  +++ +    GD+ K+  +Y+ ++   +  +   +N+L+ +   D +    L +
Sbjct: 920  PDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSL 979

Query: 312  YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
               M+++G+   + +Y  L+ A         A+E++  +   E     KLD   Y  ++K
Sbjct: 980  MHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKEC----KLDRSFYHIMMK 1035

Query: 372  VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            +F ++     A K+   M  AGV P   T   L+ + + +G  E+A  + + +   G
Sbjct: 1036 MFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEG 1092


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 141/311 (45%), Gaps = 41/311 (13%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +++ +  D+  + +  N + + + +N+   + +++     +K+M   G++ +   Y IL+
Sbjct: 539 EAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILI 598

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           K  C  GNTV A   +   K +  KG++  D+  YS I+   +     + A+ V    L 
Sbjct: 599 KGHCDVGNTVEALSTF---KCMLEKGLIP-DIRAYSAIIHSLSKNGKTKEAMGVFLKFLK 654

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ--ACVEACQF 449
            GV P+   ++SLI+     G +E+A  L++EML  G  PN    N L+      ++   
Sbjct: 655 TGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNL 714

Query: 450 DRAFRLFRSWTLSKTQVALGEDY---------DGNTDRISNMEHKDKQSITNTPNFVPNS 500
             AF+LF    +SK     G  Y         +GN ++  ++ H+ +Q    +       
Sbjct: 715 TEAFKLFDE-MISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGS------- 766

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDAC 558
                          + +N L+ + C     ++A  L ++M    L+PN +++TILIDA 
Sbjct: 767 --------------LSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAY 812

Query: 559 GGSGNVEGALQ 569
           G +  +E A Q
Sbjct: 813 GKAEMMEEAEQ 823



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 152/345 (44%), Gaps = 35/345 (10%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEV 311
           P+ +    +ID      D  K+  +  +++++ +T + + ++ L++   H  DL+   EV
Sbjct: 414 PDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEV 473

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M + GV  ++  Y  L+KA        +A E+   +K + A GVL  D+F Y+ ++ 
Sbjct: 474 LDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIEL---LKIMIANGVLP-DLFCYNCLII 529

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               AK  + A  +  DM   G+ PN  T+ + IN  + +G ++ A   F++ML +G  P
Sbjct: 530 GLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVP 589

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS-NMEHKDKQSI 490
           N+    IL++   +      A   F+   L K  +     Y      +S N + K+   +
Sbjct: 590 NNVIYTILIKGHCDVGNTVEALSTFKC-MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGV 648

Query: 491 -------TNTPN-FVPNSHYSSFDKRFSFKPTTTTYN-----------ILMKACCTDYYR 531
                     P+ F+ NS  S F K    +  +  Y+           ++      DY  
Sbjct: 649 FLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGY 708

Query: 532 VKA--------LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            K+        L +EM + G+SP+   + ILID CG  GN+E AL
Sbjct: 709 CKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKAL 753



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 141/336 (41%), Gaps = 56/336 (16%)

Query: 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285
           N +R+  K   +    + Y +  +    P++Y    +I      GD +K + +  ++  +
Sbjct: 212 NLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE 271

Query: 286 NVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
               N++ +N+ +        +   LEV K M + G+  D  +Y +L+   C    +  A
Sbjct: 272 -CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEA 330

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
           + I+   + + + G L  + FTY+ ++  F      + AL++K++M++ G+  N +T+++
Sbjct: 331 KLIF---ESMPSSG-LNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNA 386

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           +I   A AG + +AM LF EML AG EP++   N+L+   +++    +A  L       K
Sbjct: 387 MIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARK 446

Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
                                                            P+  TY++L+ 
Sbjct: 447 -----------------------------------------------LTPSPFTYSVLIS 459

Query: 524 ACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
             C  +D  +   ++++M   G+ PN   +  LI A
Sbjct: 460 GLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKA 495



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 92/186 (49%), Gaps = 13/186 (6%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKF 307
           P++++  ++I   G C  GD  K+  +Y+++    +  NI V+N+L+N      + +L  
Sbjct: 659 PDVFLYNSLIS--GFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTE 716

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
             +++  M   G+  D   Y IL+  C   GN   A  ++ E +    K V  L  F  +
Sbjct: 717 AFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQ---KSVGSLSAF--N 771

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           +++  F        A ++ +DM+   +TPN +T++ LI+A   A ++E+A  LF +M   
Sbjct: 772 SLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETR 831

Query: 428 GCEPNS 433
              PN+
Sbjct: 832 NIIPNT 837



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 117/217 (53%), Gaps = 10/217 (4%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           +VP    L+ + +  F K+ D+  A + YD    +  +PN+ +  T+I+  G C  G+  
Sbjct: 657 VVPDV-FLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLT 715

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           ++  +++++ S+ ++ + Y++  L++      +L+  L ++   Q+  V   ++++N L+
Sbjct: 716 EAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFNSLI 774

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            + C  G  + A+E++ ++  ++ K  L  ++ TY+ ++  +  A+  + A ++  DM +
Sbjct: 775 DSFCKHGKVIEARELFDDM--VDKK--LTPNIVTYTILIDAYGKAEMMEEAEQLFLDMET 830

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
             + PNT+T++SL+ +    G   + + LF++M   G
Sbjct: 831 RNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARG 867



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 126/298 (42%), Gaps = 56/298 (18%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSS---PNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F+  + K  ++  A R +   K  LSS   PN  I   +I      G+ +++ + ++ + 
Sbjct: 562 FINLYSKSGEIQVAERYF---KDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCML 618

Query: 284 SQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            + +  +I  ++++++  + +   K  + V+    K GV+ D+  YN L+   C  G+  
Sbjct: 619 EKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIE 678

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM--ALKVKEDMLSAGVTPNTI 399
            A ++Y E+ H      +  ++  Y+T++  +   K   +  A K+ ++M+S G++P+  
Sbjct: 679 KASQLYDEMLH----NGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGY 734

Query: 400 TWSSLINACANAGLVEQAM----------------------------------HLFEEML 425
            +  LI+ C   G +E+A+                                   LF++M+
Sbjct: 735 IYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMV 794

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGN 475
                PN     IL+ A  +A   + A +LF           TL+ T + L  +  GN
Sbjct: 795 DKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGN 852



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 26/185 (14%)

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT----------- 460
           G + +A  +F   +  G  P   CCN L++  ++A      ++++ S             
Sbjct: 186 GFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTY 245

Query: 461 --LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN-SHYSSFDKRFSFK----- 512
             + K    +G+   G    +S ME + K ++     F+       + D+    K     
Sbjct: 246 TNVIKAHCKVGDVIKGKM-VLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMME 304

Query: 513 ----PTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
               P   TY +L+   C        K +   M + GL+PN  ++T LID     GN+E 
Sbjct: 305 KGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEE 364

Query: 567 ALQCR 571
           AL+ +
Sbjct: 365 ALRIK 369



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 94/212 (44%), Gaps = 6/212 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F + +  F K   ++ A   +D       +PN+     +ID  G      ++  ++ D+ 
Sbjct: 770 FNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDME 829

Query: 284 SQNVTLNIYVFNSLM-NVNAHDLKFTL-EVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           ++N+  N   + SL+ + N    +F +  ++K+M+  G+  D  +Y ++  A C  G ++
Sbjct: 830 TRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSL 889

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A ++    K L     L+ DVF    ++      K     L++  +M    ++ ++ T 
Sbjct: 890 EALKLLN--KSLVEGIKLEDDVF--DALIFHLCKEKQISTVLELLSEMGKEELSLSSKTC 945

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           ++L+     +G  ++A  +   M + G  P S
Sbjct: 946 NTLLLGFYKSGNEDEASKVLGVMQRLGWVPTS 977


>gi|357114648|ref|XP_003559110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Brachypodium distachyon]
          Length = 875

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 107/221 (48%), Gaps = 2/221 (0%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F    + FG+  D       +   ++    PN+++   +++  G  G    +R+++E+
Sbjct: 280 VAFAVLAKMFGEAGDYDGIQFVFREMREVGIKPNIFVYNALLEALGKTGKPGLARSLFEE 339

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + ++ V  N     ++  +   A   +  L++++ M++  + AD    N LL  C   G 
Sbjct: 340 MTAEGVEPNARTLTAVAKIYGRARWGRDALQLWEQMRQKKIPADSILCNTLLSMCADVGL 399

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A++++ E+K  E   V K D ++Y+ ++ ++   K    AL++  +ML+ G+ PN +
Sbjct: 400 VAEAEQLFEEMKDPELSDVPKPDKWSYTAMINIYGSIKDADRALQLFAEMLAEGIEPNIM 459

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           +++ +I        ++ A  + E  L+ G +P+ + C  LL
Sbjct: 460 SYTIVIQCLGKTNRIQDAAEVLEAGLERGLKPDDRLCGCLL 500



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 126/317 (39%), Gaps = 56/317 (17%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQN---VTLNIYVFNSLMNVNAHDLKFTLEV---YKN 314
           T+I     C  + K+   +E + S     V  +   ++++++V A  L+   EV   +  
Sbjct: 211 TLITAARRCRQFAKAVEWFERMYSPGGGGVLPDEVTYSAVLDVYAQ-LRMKEEVLALFDR 269

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
            +  G   D  ++ +L K    AG+    Q ++ E++ +     +K ++F Y+ +++   
Sbjct: 270 ARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFREMREVG----IKPNIFVYNALLEALG 325

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                 +A  + E+M + GV PN  T +++      A     A+ L+E+M Q     +S 
Sbjct: 326 KTGKPGLARSLFEEMTAEGVEPNARTLTAVAKIYGRARWGRDALQLWEQMRQKKIPADSI 385

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
            CN LL  C +      A +LF                          E KD + +++ P
Sbjct: 386 LCNTLLSMCADVGLVAEAEQLFE-------------------------EMKDPE-LSDVP 419

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWT 552
                            KP   +Y  ++       D  R   L  EM   G+ PN +S+T
Sbjct: 420 -----------------KPDKWSYTAMINIYGSIKDADRALQLFAEMLAEGIEPNIMSYT 462

Query: 553 ILIDACGGSGNVEGALQ 569
           I+I   G +  ++ A +
Sbjct: 463 IVIQCLGKTNRIQDAAE 479


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 155/350 (44%), Gaps = 42/350 (12%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
           SP+     T+++     G   ++RA+   ++   +      +N+L++  A    +K   +
Sbjct: 240 SPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATK 299

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V ++M   G   D+ +YN+L    C AG    A  +  E++ L   G    DV TY+T+V
Sbjct: 300 VVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERL---GTALPDVVTYNTLV 356

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 +    AL++ E+M   GV P  +T + ++ +    G +E+A+   E++ + G  
Sbjct: 357 DACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLA 416

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT--DRISNM----EH 484
           P+    N L+ A  +A    +AF      TL    V  G   D  T    + N+     +
Sbjct: 417 PDVITYNTLIDAYCKAGNVAKAF------TLMDEMVGKGLKMDTFTLNTVLYNLCKMKRY 470

Query: 485 KDKQSITNTP---NFVPN---------SHYSSFDKRFSFK-----------PTTTTYNIL 521
           +D + + ++P    FVP+         +++  ++   + +           P+ +TYN L
Sbjct: 471 EDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTL 530

Query: 522 MKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +K  C      +A+  +NE    GL P+  ++ I+I A    G++E A +
Sbjct: 531 IKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFR 580



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 99/518 (19%), Positives = 205/518 (39%), Gaps = 106/518 (20%)

Query: 58  ALLSTVRRD-LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVS--EGNVSKFASMLSLE 114
           ALL+ ++RD ++     Y  + S  A+ G +++   +VES+     E ++  +       
Sbjct: 264 ALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTY------N 317

Query: 115 MVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMF 174
           ++A G+ ++   G++D    +  ++  LG A   L D   +  L + C +   S +    
Sbjct: 318 VLAMGLCQA---GKVDEAFRLKDEMERLGTA---LPDVVTYNTLVDACFKWRCSSDA--- 368

Query: 175 VGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234
              + +LEE R      D+  +   +  N            IV          V+   K+
Sbjct: 369 ---LRLLEEMR------DKGVKPTLVTHN------------IV----------VKSLCKE 397

Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
             L  AL   +   +   +P++    T+ID     G+  K+  + +++  + + ++ +  
Sbjct: 398 GKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTL 457

Query: 295 NSLMNVNAHDLKF---TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           N+++  N   +K      E+  +  + G + D  SY  ++ A     N   A  ++ ++ 
Sbjct: 458 NTVL-YNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQM- 515

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            +E K  L   + TY+T++K     +  + A+    + +  G+ P+  T++ +I+A    
Sbjct: 516 -IERK--LIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKE 572

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
           G +E A     +M++   +P+   CN L+       + D+A +LF SW      V  G+ 
Sbjct: 573 GDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESW------VEKGKK 626

Query: 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DY 529
            D                                           TYN L+++ C   D 
Sbjct: 627 VD-----------------------------------------VITYNTLIQSMCKVGDV 645

Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                  ++M   GL P+  ++ +++ A   +G  E A
Sbjct: 646 DTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEA 683



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 87/182 (47%), Gaps = 6/182 (3%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++ +  + +  +I  +N+L+        LK  ++      + G++ D  +YNI++ A C
Sbjct: 511 LWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYC 570

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+   A   + ++     +   K DV T +T++           ALK+ E  +  G  
Sbjct: 571 KEGDLENAFRFHNKM----VENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKK 626

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            + IT+++LI +    G V+ A+H F++M   G +P++   N++L A  EA + + A  +
Sbjct: 627 VDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNM 686

Query: 456 FR 457
             
Sbjct: 687 LH 688



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 112/277 (40%), Gaps = 34/277 (12%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L ++  M +  ++  +++YN L+K  C        +E   ++     KG++  D  TY+ 
Sbjct: 509 LRLWDQMIERKLIPSISTYNTLIKGLCRMERL---KEAIDKLNEFVEKGLVP-DETTYNI 564

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I+  +      + A +    M+     P+ +T ++L+N     G +++A+ LFE  ++ G
Sbjct: 565 IIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKG 624

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV----------ALGEDYDGNTDR 478
            + +    N L+Q+  +    D A   F    +   Q           AL E   G ++ 
Sbjct: 625 KKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSE--AGRSEE 682

Query: 479 ISNMEHK--DKQSITNT---PNFVPNSHYSSFDKRFSFKPTT-----------TTYNILM 522
             NM HK  D   ++ +   P   P+S   +  K    KP              TY   +
Sbjct: 683 AHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERL 742

Query: 523 KACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
              CT       KA+++EM   G+  +  ++  L++ 
Sbjct: 743 NGLCTGGQLKEAKAVLDEMMQKGMPVDCSTYITLMEG 779



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 145/332 (43%), Gaps = 28/332 (8%)

Query: 120 IVKSI-REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLM 178
           +VKS+ +EG+++  +G L+K+ E G+AP  +   +   L+   C+    +G V     LM
Sbjct: 390 VVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNT---LIDAYCK----AGNVAKAFTLM 442

Query: 179 EVLEEFRLPVKELDEEFRIVQLCVNK-----PDVNLAIRYACIVPRADILFCNFVREFGK 233
           + +    L +        +  LC  K      ++  +      VP  ++ +   +  + K
Sbjct: 443 DEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPD-EVSYGTVMAAYFK 501

Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
           + +   ALR +D   +    P++    T+I   G+C       AI  D  ++ V   +  
Sbjct: 502 EYNPEPALRLWDQMIERKLIPSISTYNTLIK--GLCRMERLKEAI--DKLNEFVEKGLVP 557

Query: 294 FNSLMNVNAH------DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
             +  N+  H      DL+     +  M +     D+ + N L+   CL G    A +++
Sbjct: 558 DETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLF 617

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
              +    KG  K+DV TY+T+++          AL   +DM   G+ P+  T++ +++A
Sbjct: 618 ---ESWVEKGK-KVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSA 673

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
            + AG  E+A ++  ++  +G    S  C +L
Sbjct: 674 LSEAGRSEEAHNMLHKLADSGKLSQSFACPLL 705



 Score = 46.2 bits (108), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 89/205 (43%), Gaps = 7/205 (3%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  + K+ DL +A R ++   ++   P++  C T+++   + G   K+  ++E    + 
Sbjct: 565 IIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKG 624

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
             +++  +N+L+       D+   L  + +M+  G+  D  +YN++L A   AG +   +
Sbjct: 625 KKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRS---E 681

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI-TWSS 403
           E +  +  L   G L    F    +    AD    +      E   S     N + T+  
Sbjct: 682 EAHNMLHKLADSGKLS-QSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYME 740

Query: 404 LINACANAGLVEQAMHLFEEMLQAG 428
            +N     G +++A  + +EM+Q G
Sbjct: 741 RLNGLCTGGQLKEAKAVLDEMMQKG 765


>gi|12321310|gb|AAG50731.1|AC079041_24 PPR-repeat protein, putative [Arabidopsis thaliana]
          Length = 690

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 106/238 (44%), Gaps = 6/238 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + FC  +  F K+ ++  A   +   ++    P++    T+ID     G       ++  
Sbjct: 287 VTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQ 346

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
              + V L++ VF+S ++V   + DL     VYK M   G+  ++ +Y IL+K  C  G 
Sbjct: 347 ALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGR 406

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  +YG++     K  ++  + TYS+++  F      +    + EDM+  G  P+ +
Sbjct: 407 IYEAFGMYGQI----LKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVV 462

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +  L++  +  GL+  AM    +ML      N    N L+       +FD A ++FR
Sbjct: 463 IYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFR 520



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 127/296 (42%), Gaps = 33/296 (11%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  F +L+N      ++    +++K M++ G+  D+ +Y+ L+     AG   +  +++
Sbjct: 285 NVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLF 344

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            +  H   KGV KLDV  +S+ + V+  +     A  V + ML  G++PN +T++ LI  
Sbjct: 345 SQALH---KGV-KLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKG 400

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKT 464
               G + +A  ++ ++L+ G EP+    + L+    +       F L+           
Sbjct: 401 LCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPD 460

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPN------FVPNS------HYSSFDKR---- 508
            V  G   DG + +   M H  + S+            V NS        + FD+     
Sbjct: 461 VVIYGVLVDGLSKQ-GLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVF 519

Query: 509 -----FSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
                +  KP   T+  +M+    +    +A  L   M  +GL P+ +++  LIDA
Sbjct: 520 RLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDA 575



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 149/340 (43%), Gaps = 24/340 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           ++F + +  + K  DL +A   Y        SPN+ +  TI+ + G+C  G   ++  +Y
Sbjct: 357 VVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNV-VTYTIL-IKGLCQDGRIYEAFGMY 414

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
             +  + +  +I  ++SL++      +L+    +Y++M K+G   D+  Y +L+    L+
Sbjct: 415 GQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDG--LS 472

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
              ++   +   VK L     ++L+V  +++++  +     +  ALKV   M   G+ P+
Sbjct: 473 KQGLMLHAMRFSVKMLGQS--IRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPD 530

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             T+++++      G +E+A+ LF  M + G EP++     L+ A  +  +     +LF 
Sbjct: 531 VATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFD 590

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
               +K    +        + + ++  K  + I +   F  N      +      P   T
Sbjct: 591 LMQRNKISADIAV-----CNVVIHLLFKCHR-IEDASKFFNNLIEGKME------PDIVT 638

Query: 518 YNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILI 555
           YN ++   C+       + +   ++     PN ++ TILI
Sbjct: 639 YNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILI 678


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 114/266 (42%), Gaps = 30/266 (11%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           SYN++L+         +A  ++ +   + ++G+    V+T+  ++K F        A  +
Sbjct: 167 SYNVVLEILVAGNCPKVAPNVFYD---MLSRGI-SPTVYTFGVVMKAFCMVNEVDSACSL 222

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             DM   G  PN+I +  LI+A +    V +AM L EEM   GCEP+ Q  N ++    +
Sbjct: 223 LRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCK 282

Query: 446 ACQFDRAFRLFRSWTLSK-TQVALGEDY-------DGNTDRISNMEHKDKQSITNTPNFV 497
           A +   A +L     L   T  AL + Y        G  D    M  K     T   N +
Sbjct: 283 AGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTL 342

Query: 498 PNSHYSSFDKRF--------------SFKPTTTTYNILMKACCTDYYRVKAL--MNEMRT 541
            N +  S   RF               F+P   T+NI++   C   Y V AL  ++EM  
Sbjct: 343 INGYVVS--GRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVK 400

Query: 542 VGLSPNHISWTILIDACGGSGNVEGA 567
            G  PN I++TILID     G+ E A
Sbjct: 401 KGFEPNVITYTILIDGFCKQGHFEEA 426



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 138/331 (41%), Gaps = 26/331 (7%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           KK  LVSAL   D   K    PN+     +ID  G C  G + ++  +   + ++ ++LN
Sbjct: 384 KKGYLVSALEFLDEMVKKGFEPNVITYTILID--GFCKQGHFEEASKVVNSMSAKGLSLN 441

Query: 291 IYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
              +N L+     D K    L++Y  M   G   D+ ++N L+   C        +E  G
Sbjct: 442 TVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKM---EEALG 498

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
             + +  +GV+  +  TY+T++  F   +  Q A K+  +M   G   + IT++ LI A 
Sbjct: 499 LYRDMLLEGVIA-NTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKAL 557

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468
              G  E+ + L E+M      P+   CNIL+ +     + + A +  R       Q  L
Sbjct: 558 CKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDM----IQRGL 613

Query: 469 GEDYDGNTDRISNMEHKDK-QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
             D       I+ +    + Q   N  N +               P   TYN L+   C 
Sbjct: 614 TPDIVTYNSLINGLCKMGRFQEALNLFNGLQAK---------GIHPDAVTYNTLISRYCY 664

Query: 528 D--YYRVKALMNEMRTVGLSPNHISWTILID 556
           +  +     L+ +  + G  PN I+W+ILI+
Sbjct: 665 EGLFNDACQLLFKGVSNGFIPNEITWSILIN 695



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 135/311 (43%), Gaps = 29/311 (9%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE---VYKNMQKLGVM 321
           G+C  G   ++RA+   + + N  L    +N+L+N      +F      +YKNM   G  
Sbjct: 314 GLCRMGKVDEARAMLSKIPNPNTVL----YNTLINGYVVSGRFEEAKDLLYKNMVIAGFE 369

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            D  ++NI++   C  G  V A E   E+     K   + +V TY+ ++  F     ++ 
Sbjct: 370 PDAFTFNIMIDGLCKKGYLVSALEFLDEM----VKKGFEPNVITYTILIDGFCKQGHFEE 425

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A KV   M + G++ NT+ ++ LI A    G ++ A+ ++ EM   GC+P+    N L+ 
Sbjct: 426 ASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIY 485

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              +  + + A  L+R   L        E    NT   + + H   +        +  + 
Sbjct: 486 GLCKNDKMEEALGLYRDMLL--------EGVIANTVTYNTLIHAFLRL-----ELIQQAD 532

Query: 502 YSSFDKRFSFKP-TTTTYNILMKACCTDYYRVK--ALMNEMRTVGLSPNHISWTILIDAC 558
               + RF   P    TYN L+KA C      K   L+ +M    + P+  S  ILI++ 
Sbjct: 533 KLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSF 592

Query: 559 GGSGNVEGALQ 569
             +G V  ALQ
Sbjct: 593 CRTGKVNDALQ 603


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 141/331 (42%), Gaps = 65/331 (19%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLN 290
           K R +  AL  +   K    SPN++   ++I   G+C    + ++ A+  ++ S N+  N
Sbjct: 57  KDRRVNEALDIFSYMKAKGISPNIFTYNSLIQ--GLCNFSRWREASAMLNEMMSLNIMPN 114

Query: 291 IYVFNSLMNV-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
           I  F+ L+N+     N  + +    V K M ++GV  ++ +Y+ L+    L      A++
Sbjct: 115 IVTFSLLINIFCKEGNVFEAR---GVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARK 171

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           ++     +  KG  K DVF+Y+ ++  +  AK    A ++  +M+  G+TP+ +++++LI
Sbjct: 172 LF---DVMITKGC-KPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLI 227

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           +     G + +A  LF+ ML  G  P+    +ILL    +     +AFRLFR        
Sbjct: 228 DGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFR-------- 279

Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525
            A+   Y                                       KP    YNIL+ A 
Sbjct: 280 -AMQSTY--------------------------------------LKPNMVMYNILIDAM 300

Query: 526 CT--DYYRVKALMNEMRTVGLSPNHISWTIL 554
           C   +    + L +E+   GL PN   W + 
Sbjct: 301 CKSRNLKEARKLFSELFVQGLQPNMKHWKLF 331



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 144/326 (44%), Gaps = 34/326 (10%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--T 308
            P+++   TII+  G+C  G+ + +  +++ +       ++  ++++++    D +    
Sbjct: 7   QPDVHTYTTIIN--GLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 64

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L+++  M+  G+  ++ +YN L++  C       A  +  E+  L     +  ++ T+S 
Sbjct: 65  LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLN----IMPNIVTFSL 120

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++ +F        A  V + M   GV PN +T+SSL+N  +    V +A  LF+ M+  G
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDG--NTDRISNME 483
           C+P+    NIL+    +A +   A +LF       L+   V+     DG     R+    
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAH 240

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRT 541
              K  +TN                    P   TY+IL+   C   Y  KA  L   M++
Sbjct: 241 DLFKNMLTNGN-----------------LPDLCTYSILLDGFCKQGYLAKAFRLFRAMQS 283

Query: 542 VGLSPNHISWTILIDACGGSGNVEGA 567
             L PN + + ILIDA   S N++ A
Sbjct: 284 TYLKPNMVMYNILIDAMCKSRNLKEA 309



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 105/267 (39%), Gaps = 50/267 (18%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D+ +Y  ++   C  G TV A  ++   K +   G  + DV TYSTI+      + 
Sbjct: 5   GYQPDVHTYTTIINGLCKIGETVAAAGLF---KKMGEAGC-QPDVVTYSTIIDSLCKDRR 60

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              AL +   M + G++PN  T++SLI    N     +A  +  EM+     PN    ++
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           L+        F +   +F +  + KT   +G +                      PN V 
Sbjct: 121 LINI------FCKEGNVFEARGVLKTMTEMGVE----------------------PNVVT 152

Query: 499 NSH----YS----SFDKRFSF--------KPTTTTYNILMKACC--TDYYRVKALMNEMR 540
            S     YS     F+ R  F        KP   +YNIL+   C        K L NEM 
Sbjct: 153 YSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMI 212

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGA 567
             GL+P+ +S+  LID     G +  A
Sbjct: 213 HQGLTPDIVSYNTLIDGLCQLGRLREA 239



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 72/178 (40%), Gaps = 49/178 (27%)

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M++ G  P+  T++++IN     G    A  LF++M +AGC+P+    + ++ +  +  +
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
            + A  +F                                               S+ K 
Sbjct: 61  VNEALDIF-----------------------------------------------SYMKA 73

Query: 509 FSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
               P   TYN L++  C  + +    A++NEM ++ + PN +++++LI+     GNV
Sbjct: 74  KGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNV 131


>gi|428186270|gb|EKX55120.1| hypothetical protein GUITHDRAFT_53115, partial [Guillardia theta
           CCMP2712]
          Length = 363

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 135/328 (41%), Gaps = 42/328 (12%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   +    K  +   A+  Y   +     PN +    +I  C   G   K+  ++E 
Sbjct: 64  VTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFER 123

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++++ +  N+Y F + ++      D +  L++ + M   G+  ++ +Y+  + AC  A  
Sbjct: 124 MQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAAE 183

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+   G ++ +  + + K D+  YS ++     A  W+ A ++ + M   G+TP+ +
Sbjct: 184 ---ARPALGLLERMTNEKI-KPDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDVV 239

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +S+LI A   AG   +A+ +F+ M +AG  PN       + AC +A ++ R+  L    
Sbjct: 240 AYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLERM 299

Query: 460 TLSK------------TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
              K            + ++ G  +D     +  +E  + Q                   
Sbjct: 300 KADKLRPDAVAYNFVISALSRGGQWDAGLTLLQMLEEDEAQ------------------- 340

Query: 508 RFSFKPTTTTYNILMKACCTDYYRVKAL 535
                P  +TY  ++KAC  +    KAL
Sbjct: 341 -----PNISTYCTVIKACGDNGQWEKAL 363



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 112/286 (39%), Gaps = 30/286 (10%)

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV-----KHLEAKGVLKLD 362
            LEV K+++K G+     SYN  + A    G    A  ++  V     ++  A   L+ D
Sbjct: 3   ALEVLKSIEKEGLTPTRVSYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAARSLRPD 62

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
             T+ST +   A    WQ A+ +  +M + G+ PN  T+++LI AC   G V +A  +FE
Sbjct: 63  TVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFE 122

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ---------------VA 467
            M   G   N       + +C +   + RA +L         Q                A
Sbjct: 123 RMQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAA 182

Query: 468 LGEDYDGNTDRISNMEHKDK--------QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                 G  +R++N + K           +      + P +      KR    P    Y+
Sbjct: 183 EARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDVVAYS 242

Query: 520 ILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
            L++A     ++ R   +   M   G+ PN I++T  I AC  +G 
Sbjct: 243 TLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGE 288



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 510 SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           S +P T T++  + AC    ++ R   + +EM   G+ PN  ++  LI AC   G V  A
Sbjct: 58  SLRPDTVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKA 117

Query: 568 LQ 569
            +
Sbjct: 118 FE 119


>gi|302768873|ref|XP_002967856.1| hypothetical protein SELMODRAFT_169254 [Selaginella moellendorffii]
 gi|300164594|gb|EFJ31203.1| hypothetical protein SELMODRAFT_169254 [Selaginella moellendorffii]
          Length = 731

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 180/415 (43%), Gaps = 58/415 (13%)

Query: 178 MEVLEEF-RLPVKELDEEF--RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG-K 233
           +EVLEE  +    ++++ +  R  Q C  +  V  A RY  ++    +   N +      
Sbjct: 17  LEVLEEMEKKGTLDMNKVYHARFYQECKRQLAVEEAFRYTGLIKSPTLSTYNMLLSVCCN 76

Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL--RSQNVTLNI 291
             D+  A  A+ A K+    P+  I  T+I  C        S+A+  DL  +++N    +
Sbjct: 77  AGDMNGAFGAFAALKRAGFKPDCMIYTTLISTC--------SKALKTDLVFQARNPGPIL 128

Query: 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +  NS++           +VY+ M+ +GV A++ +Y  ++  C   G    A  IY    
Sbjct: 129 HWTNSVL----------AQVYREMESVGVEANLLTYGAIIDGCARTGELAKAFGIY---- 174

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTPNTITWSSLINACAN 410
            +     +K D   +++++     +   + A +V  ++ S   + PN +T  SLI+AC+ 
Sbjct: 175 RIMLSKKIKPDRVIFNSLINACGRSGAVKRAFEVFTELKSENPINPNHVTMCSLIDACSK 234

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
           AG  + A  ++  M + G     +     + AC  +   +RAF ++    + K  V   E
Sbjct: 235 AGDGDSAYEVYTMMRKRGIGGCPEPYTAAVHACSSSGNLERAFSIYDD--MKKDGVKPDE 292

Query: 471 -------DYDGNTDRIS----NMEHKDKQSITNTPNFVPN-----SHYSSFDKRF----- 509
                  D  G+  +I      ++  +K S+   P    +     S+  +++K       
Sbjct: 293 IFFSALIDVAGHASKIDCAFDVLQEVEKYSLVPGPVIFSSLMGVCSNTGNWEKAIFLYEN 352

Query: 510 ----SFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDAC 558
                 +P+ +T N LM A C       AL  + E++  G+SPN ++++IL++AC
Sbjct: 353 IQAVGIRPSVSTLNALMTALCRGKQFQNALQSLEELKEAGVSPNQLTYSILLEAC 407



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 107/229 (46%), Gaps = 10/229 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL--SSPNMYICRTIIDVCGICGDYMKSRAIY 279
           +  C+ +    K  D  SA   Y   +K      P  Y     +  C   G+  ++ +IY
Sbjct: 223 VTMCSLIDACSKAGDGDSAYEVYTMMRKRGIGGCPEPYT--AAVHACSSSGNLERAFSIY 280

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLA 337
           +D++   V  +   F++L++V  H  K     +V + ++K  ++     ++ L+  C   
Sbjct: 281 DDMKKDGVKPDEIFFSALIDVAGHASKIDCAFDVLQEVEKYSLVPGPVIFSSLMGVCSNT 340

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           GN   A  +Y   ++++A G+ +  V T + ++      K +Q AL+  E++  AGV+PN
Sbjct: 341 GNWEKAIFLY---ENIQAVGI-RPSVSTLNALMTALCRGKQFQNALQSLEELKEAGVSPN 396

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
            +T+S L+ AC        A++L+   +  G  PN   C+ ++  C+E 
Sbjct: 397 QLTYSILLEACEKENEAGIALNLYTHAIADGIVPNLAMCDNIIGICLEG 445



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 102/241 (42%), Gaps = 42/241 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNV--NAHDLKFTLE 310
           P+  I  ++I+ CG  G   ++  ++ +L+S+N +  N     SL++    A D     E
Sbjct: 184 PDRVIFNSLINACGRSGAVKRAFEVFTELKSENPINPNHVTMCSLIDACSKAGDGDSAYE 243

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           VY  M+K G+      Y   + AC  +GN   A  IY ++K    K  +K D   +S ++
Sbjct: 244 VYTMMRKRGIGGCPEPYTAAVHACSSSGNLERAFSIYDDMK----KDGVKPDEIFFSALI 299

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE-------- 422
            V   A     A  V +++    + P  + +SSL+  C+N G  E+A+ L+E        
Sbjct: 300 DVAGHASKIDCAFDVLQEVEKYSLVPGPVIFSSLMGVCSNTGNWEKAIFLYENIQAVGIR 359

Query: 423 ---------------------------EMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
                                      E+ +AG  PN    +ILL+AC +  +   A  L
Sbjct: 360 PSVSTLNALMTALCRGKQFQNALQSLEELKEAGVSPNQLTYSILLEACEKENEAGIALNL 419

Query: 456 F 456
           +
Sbjct: 420 Y 420



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 14/226 (6%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           +I F   +   G    +  A       +K+   P   I  +++ VC   G++ K+  +YE
Sbjct: 292 EIFFSALIDVAGHASKIDCAFDVLQEVEKYSLVPGPVIFSSLMGVCSNTGNWEKAIFLYE 351

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++++  +  ++   N+LM       +F   L+  + +++ GV  +  +Y+ILL+AC    
Sbjct: 352 NIQAVGIRPSVSTLNALMTALCRGKQFQNALQSLEELKEAGVSPNQLTYSILLEACEKEN 411

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
              +A  +Y    H  A G++  ++     I+ +  +     +   +    L++ V P  
Sbjct: 412 EAGIALNLY---THAIADGIVP-NLAMCDNIIGICLEG----IRSSIGPPKLASSVNP-- 461

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
             W    N   +   +  A+  F + L  G +P     + LL AC+
Sbjct: 462 -LWMVDDNQKPHGQWLSWALACFRQTLSGGAQPTLPVLSRLL-ACL 505


>gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g07740, mitochondrial-like [Cucumis sativus]
          Length = 460

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 133/305 (43%), Gaps = 36/305 (11%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            I   LR++N+  N  +F +L+     AH ++  +E++  M        + S+N+LL   
Sbjct: 102 TILGHLRNRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTL 161

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
                   A EI+ +   +      + +  +Y+ ++K +     W+ A  + ++ML  GV
Sbjct: 162 VDCDQFSKASEIFQQAYEMG----FRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGV 217

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+ +T++S +      G ++ A+ LF+ M + G  PN+    +L++      ++  A +
Sbjct: 218 QPSVVTYNSXLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKK 277

Query: 455 L-----FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
           L     F    L      +   + G T  I  ME     S+ N              K+ 
Sbjct: 278 LMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEME-----SLLNEM------------KKR 320

Query: 510 SFKPTTTTYNILMKACCT-----DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
             KP   TYNIL+   C      D Y+V   + +M+  G  PN  ++ ++ID    +G+ 
Sbjct: 321 RLKPDVVTYNILVNYLCKEGKVGDAYKV---LVKMQVGGCDPNAATYRMMIDGYCNAGDF 377

Query: 565 EGALQ 569
           +GA++
Sbjct: 378 DGAMK 382



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/195 (19%), Positives = 87/195 (44%), Gaps = 6/195 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
           G + ++  +++++  + V  ++  +NS + V     ++   L ++KNM + G   +  +Y
Sbjct: 200 GGWEQACNLFDEMLEKGVQPSVVTYNSXLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTY 259

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            +L++  C  G    A+++  +   +E  G  KL    Y  ++              +  
Sbjct: 260 ALLMEGWCFIGKYKEAKKLMFD---MEFHGC-KLRPVNYGVLMTHLGKTGNIDEMESLLN 315

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M    + P+ +T++ L+N     G V  A  +  +M   GC+PN+    +++     A 
Sbjct: 316 EMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAG 375

Query: 448 QFDRAFRLFRSWTLS 462
            FD A ++  +  +S
Sbjct: 376 DFDGAMKILNAMLMS 390



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 25/226 (11%)

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +YS+++   A ++ ++    +   + +  +  N   + +LI     A LVE+ + LF +M
Sbjct: 83  SYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFVALIQHYGKAHLVEKGIELFHQM 142

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRL--------FRSWTLSKTQVALGEDYDGNT 476
               C    Q  N+LL   V+  QF +A  +        FR  ++S   +  G    G  
Sbjct: 143 PSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMGFRPNSVSYNIMIKGWIKKGGW 202

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS-------FK--------PTTTTYNIL 521
           ++  N+  +  +          NS      ++         FK        P   TY +L
Sbjct: 203 EQACNLFDEMLEKGVQPSVVTYNSXLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALL 262

Query: 522 MKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           M+  C    Y   K LM +M   G     +++ +L+   G +GN++
Sbjct: 263 MEGWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVLMTHLGKTGNID 308


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 125/254 (49%), Gaps = 9/254 (3%)

Query: 211 IRYACIVPRADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269
           +R + I P  DI+  N  +    ++ +L  A++ Y+    H   P+++    +I V G C
Sbjct: 317 VRRSGIQP--DIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRC 374

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASY 327
           G   ++  +++DL S+    +   +NSL+   A +  +    E+ ++M K+G   D  +Y
Sbjct: 375 GMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTY 434

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N ++      G   LA ++Y ++K L  +     D  TY+ ++     A   + A +V  
Sbjct: 435 NTIIHMYGKRGQHDLAFQLYSDMK-LSGRSP---DAVTYTVLIDSLGKANMIKEAAEVMS 490

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +ML+A V P   T+S+LI   A AG   +A   F+ ML++G +P+    +++L   +   
Sbjct: 491 EMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFN 550

Query: 448 QFDRAFRLFRSWTL 461
           +  +A +L++   L
Sbjct: 551 ESGKAMKLYQEMVL 564



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 135/296 (45%), Gaps = 39/296 (13%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           D M+SR    DL S N  +N  + +  M  N       +E+   +++ G+  D+ +YN L
Sbjct: 278 DLMRSRGCEPDLVSFNTLINARLKSGTMVTN-----LAIELLNEVRRSGIQPDIITYNTL 332

Query: 331 LKACCLAGNTVLAQEIYGE-VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           + AC    N   A ++Y + V H       + D++TY+ ++ V+      + A ++ +D+
Sbjct: 333 ISACSRESNLEEAVKVYNDMVAHR-----CQPDLWTYNAMISVYGRCGMSREAGRLFKDL 387

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
            S G  P+ +T++SL+ A A  G V++   + E+M++ G   +    N ++    +  Q 
Sbjct: 388 ESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQH 447

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRI-------SNMEHKDKQSITNTPNFVPNSHY 502
           D AF+L+    LS      G   D  T  +       +NM  +  + ++   N       
Sbjct: 448 DLAFQLYSDMKLS------GRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLN------- 494

Query: 503 SSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILID 556
                    KPT  T++ L+        RV+A    + M   G+ P+H+++++++D
Sbjct: 495 ------AXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLD 544



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 91/426 (21%), Positives = 165/426 (38%), Gaps = 72/426 (16%)

Query: 207  VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266
            + LAI   C + R ++L  + +  +G     + A    D  ++H S  +  I   +I + 
Sbjct: 625  LRLAISQGCELDRENLL--SILGSYGSSGRHLEARELLDFLREHSSGSHQLINEALIIM- 681

Query: 267  GICGDYMKSRAIYEDLRSQNVTL---NIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVM 321
             +C  +    A+ E  ++++  L   +  ++ SL+     +  F    +++ +M+  GV 
Sbjct: 682  -LCKAHQLGDALREYGKARDFGLFCGSFTMYESLLLCCEENELFAEASQIFSDMRFYGVE 740

Query: 322  ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
                 Y  ++   C  G    A  +   +   E KG+L  DV  ++ +++ +   K WQ 
Sbjct: 741  PSDHLYRSMVVTYCKMGFPETAHYL---IDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQK 797

Query: 382  ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
            A  +   +       +   W++LI+A A +G  E+A  +F  M++ G  P     N L+Q
Sbjct: 798  AESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQ 857

Query: 442  ACVEACQFDRAFRLFR-----SWTLSKTQVALGED--------------YDG-------- 474
            A +   + D  + + +      + +SK+ + L  D              Y G        
Sbjct: 858  ALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFP 917

Query: 475  -------------NTDRISNME----------HKDKQSITNT--------PNFVPNSHYS 503
                            R+ ++E           K   SI N+         +F       
Sbjct: 918  TMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVY 977

Query: 504  SFDKRFSFKPTTTTYNILMKACCTDYYRVK--ALMNEMRTVGLSPNHISWTILIDACGGS 561
               +    KP   TYN L+   C D    +  +LM+EMR VGL P   ++  LI A G  
Sbjct: 978  QLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKL 1037

Query: 562  GNVEGA 567
              VE A
Sbjct: 1038 QMVEQA 1043



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 131/314 (41%), Gaps = 26/314 (8%)

Query: 262  IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLG 319
            ++D     G+  + + IY+ +++      ++++  ++ + A    ++    +   M+   
Sbjct: 890  MLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAX 949

Query: 320  VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
               D++ +N +LK     G+     +  G+V  L  +  LK D  TY+T++ ++   +  
Sbjct: 950  FKPDLSIWNSVLKLYTGIGDF----KKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRP 1005

Query: 380  QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
            +  L +  +M   G+ P   T+ SLI+A     +VEQA  LFE +L   C+ +    +I+
Sbjct: 1006 EEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIM 1065

Query: 440  LQACVEACQFDRAFRLFR-SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
            +             ++FR S   SK +  LG   +   +      H    S + +    P
Sbjct: 1066 M-------------KMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQ--P 1110

Query: 499  NSHYSSFD--KRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTIL 554
                   D  K      +T  Y+ ++ A     D+      + EM+  GL P+H  WT  
Sbjct: 1111 EEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCF 1170

Query: 555  IDACGGSGNVEGAL 568
            + A   S +   A+
Sbjct: 1171 VRAASLSQHTSEAI 1184



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 109/261 (41%), Gaps = 34/261 (13%)

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           A    LA EI+       A+      V  Y+ ++ V+A    +    ++ + M S G  P
Sbjct: 233 ANQEALAVEIFAR-----AEAAXGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEP 287

Query: 397 NTITWSSLINACANAG--LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           + +++++LINA   +G  +   A+ L  E+ ++G +P+    N L+ AC      + A +
Sbjct: 288 DLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVK 347

Query: 455 LFRSWTLSKTQVALGEDYDG--------NTDRISNMEHKDKQSITNTPNFVP-NSHYSSF 505
           ++      + Q  L   Y+            R +    KD +S    P+ V  NS   +F
Sbjct: 348 VYNDMVAHRCQPDLW-TYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAF 406

Query: 506 DK---------------RFSFKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSPNH 548
            +               +  F     TYN  I M      +     L ++M+  G SP+ 
Sbjct: 407 AREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDA 466

Query: 549 ISWTILIDACGGSGNVEGALQ 569
           +++T+LID+ G +  ++ A +
Sbjct: 467 VTYTVLIDSLGKANMIKEAAE 487


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 163/397 (41%), Gaps = 40/397 (10%)

Query: 194  EFRIVQLCVNKPDVNLAIRYACIVPR-----------------ADIL-FCNFVREFGKKR 235
            EF  V +C N    N+ I + C + R                  D++ +   V  + +  
Sbjct: 679  EFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFG 738

Query: 236  DLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
            +L    +  +  K+    PN YI  +II + C IC       A  E +R Q +  +  V+
Sbjct: 739  ELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR-QGILPDTVVY 797

Query: 295  NSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
             +L++      D++   + +  M    +  D+ +Y  ++   C  G+ V A +++ E   
Sbjct: 798  TTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE--- 854

Query: 353  LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
            +  KG L+ D  T++ ++  +  A   + A +V   M+ AG +PN +T+++LI+     G
Sbjct: 855  MFCKG-LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEG 913

Query: 413  LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
             ++ A  L  EM + G +PN    N ++    ++   + A +L          V   E  
Sbjct: 914  DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL----------VGEFEAA 963

Query: 473  DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YY 530
              N D ++     D    +   +           K    +PT  T+N+LM   C      
Sbjct: 964  GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK--GLQPTIVTFNVLMNGFCLHGMLE 1021

Query: 531  RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              + L+N M   G++PN  ++  L+       N++ A
Sbjct: 1022 DGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 1058



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 141/326 (43%), Gaps = 36/326 (11%)

Query: 274 KSRAIYEDLRSQNVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           ++R ++E + +  + L++    V+ + ++ + +     + V++   ++GV  ++ASYNI+
Sbjct: 636 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 695

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +   C  G     +E +  +  +E KG    DV +YST+V  +          K+ E M 
Sbjct: 696 IHFVCQLGRI---KEAHHLLLLMELKGYTP-DVISYSTVVNGYCRFGELDKVWKLIEVMK 751

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
             G+ PN+  + S+I        + +A   F EM++ G  P++     L+    +     
Sbjct: 752 RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIR 811

Query: 451 RAFRLF-----RSWT---LSKTQVALGEDYDGNTDRISNMEHK------DKQSITNTPNF 496
            A + F     R  T   L+ T +  G    G+      + H+      +  S+T T   
Sbjct: 812 AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE-- 869

Query: 497 VPNSHYSSFDKRFSFK-----------PTTTTYNILMKACCT--DYYRVKALMNEMRTVG 543
           + N +  +   + +F+           P   TY  L+   C   D      L++EM  +G
Sbjct: 870 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 929

Query: 544 LSPNHISWTILIDACGGSGNVEGALQ 569
           L PN  ++  +++    SGN+E A++
Sbjct: 930 LQPNIFTYNSIVNGLCKSGNIEEAVK 955



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 120/271 (44%), Gaps = 39/271 (14%)

Query: 222  ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
            + F   +  + K   +  A R ++   +   SPN+    T+ID  G+C  GD   +  + 
Sbjct: 865  VTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLID--GLCKEGDLDSANELL 922

Query: 280  EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
             ++    +  NI+ +NS++N    + +++  +++    +  G+ AD  +Y  L+ A C +
Sbjct: 923  HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 982

Query: 338  GNTVLAQEIYGEV--KHLE------------------------------AKGVLKLDVFT 365
            G    AQEI  E+  K L+                              AKG+   +  T
Sbjct: 983  GEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP-NATT 1041

Query: 366  YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
            ++++VK +      + A  + +DM S GV P+  T+ +L+     A  +++A  LF+EM 
Sbjct: 1042 FNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMK 1101

Query: 426  QAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
              G   +    ++L++  ++  +F  A  +F
Sbjct: 1102 GKGFSVSVSTYSVLIKGFLKRKKFLEAREVF 1132



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 6/170 (3%)

Query: 261  TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEVYKN-MQKL 318
            T++D     G+  K++ I +++  + +   I  FN LMN    H +    E   N M   
Sbjct: 974  TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK 1033

Query: 319  GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
            G+  +  ++N L+K  C+  N   A  IY   K + ++GV   D  TY  +VK    A+ 
Sbjct: 1034 GIAPNATTFNSLVKQYCIRNNLKAATAIY---KDMCSRGV-GPDGKTYENLVKGHCKARN 1089

Query: 379  WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
             + A  + ++M   G + +  T+S LI          +A  +F++M + G
Sbjct: 1090 MKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 1139


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 135/320 (42%), Gaps = 9/320 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P++     +I+   I G +  +  + +++  + +  ++  F++L+N    + KF    E+
Sbjct: 286 PDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEEL 345

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y  M    ++    +Y+ ++   C       A+ ++    +L        D+ T++T++ 
Sbjct: 346 YDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMF----YLTPTKGCSPDIITFNTLIA 401

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +  AK     +K+  +M  AG+  NTIT+++LI+     G +  A  L +EM+ +G  P
Sbjct: 402 GYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCP 461

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           N   CN LL    +  +   A  +F++   SK  +     ++G    +          I 
Sbjct: 462 NVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLIN 521

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHI 549
                     Y     R    P T TY+ ++   C      +A  + + M +   SP+ +
Sbjct: 522 EGKFLEAEELYEEMPHR-GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVV 580

Query: 550 SWTILIDACGGSGNVEGALQ 569
           ++  LI     +G V+  L+
Sbjct: 581 TFNTLITGYCKAGMVDDGLE 600



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 54/246 (21%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL---- 318
           G C  GD   ++ + +++ S  V  N+   N+L++   +   LK  LE++K MQK     
Sbjct: 437 GFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDI 496

Query: 319 -------GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
                  GV  D+ +YNIL+      G  + A+E+Y E+ H   +G++  D  TYS+++ 
Sbjct: 497 DASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPH---RGIVP-DTITYSSMID 552

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ--------------- 416
                     A ++ + M S   +P+ +T+++LI     AG+V+                
Sbjct: 553 GLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVA 612

Query: 417 --------------------AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
                               A+ +F+EM+ +G  P++     +L       + +RA  + 
Sbjct: 613 DAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAML 672

Query: 457 RSWTLS 462
               +S
Sbjct: 673 EDLQMS 678



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 137/330 (41%), Gaps = 32/330 (9%)

Query: 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADM 324
           G+C +   S A+  DL  Q    N+  F +LMN    + +    + +   M + G+  + 
Sbjct: 160 GLCVEDRISEAL--DLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQ 217

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            +Y  ++   C  G+TV A  +   ++ +E    +  +V  Y+TI+           A  
Sbjct: 218 ITYGTIVDGMCKMGDTVSALNL---LRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHN 274

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           +  +M    + P+ +T++ +IN    +G    A  L +EML+    P+    + L+ A V
Sbjct: 275 LFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFV 334

Query: 445 EACQFDRAFRLFRSW---TLSKTQVALGEDYDG--NTDRISNMEHKDKQSITN--TPNFV 497
           +  +F  A  L+      ++  + V      DG    +R+   EH    + T   +P+ +
Sbjct: 335 KEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDII 394

Query: 498 P-NSHYSSF--DKRF-------------SFKPTTTTYNILMKACCT--DYYRVKALMNEM 539
             N+  + +   KR                   T TY  L+   C   D    + L+ EM
Sbjct: 395 TFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEM 454

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            + G+ PN ++   L+D    +G ++ AL+
Sbjct: 455 ISSGVCPNVVTCNTLLDGLCDNGKLKDALE 484



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 101/252 (40%), Gaps = 23/252 (9%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           + ++K M+ L +  +  S+ IL+K  C       A   +G++  L         V T++T
Sbjct: 101 ISLHKKMEMLRMPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLG----FHPTVVTFNT 156

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++           AL    D+      PN +T+++L+N     G V +A+ L + ML+ G
Sbjct: 157 LLHGLCVEDRISEAL----DLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDG 212

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI-SNMEHKDK 487
            +PN      ++    +      A  L R        +     Y+   D +  +  H D 
Sbjct: 213 LQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDA 272

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLS 545
            ++     F+       F       P   TYN ++   C    +   + L+ EM    ++
Sbjct: 273 HNL-----FIEMQEKEIF-------PDIVTYNCMINGFCISGRWSDAEQLLQEMLERKIN 320

Query: 546 PNHISWTILIDA 557
           P+ ++++ LI+A
Sbjct: 321 PDVVTFSALINA 332


>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 158/358 (44%), Gaps = 24/358 (6%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKS 275
           P  +  F   +  F     +  A+  +D  KK    P+++    ++D  G+C  GD +  
Sbjct: 280 PCNNYCFNAVIHGFCHDGQVHKAIEVFDGMKKCGFVPDVHSYSILVD--GLCKQGDVLTG 337

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
             +  ++    +T N+  ++SL++    A  ++   E++K ++  G   D   Y+I+L  
Sbjct: 338 YYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHG 397

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
           CC   +  +  +++ ++ H         D + YS+++  +   +  + AL+V E M+S G
Sbjct: 398 CCQHLDLEICYDLWNDMVHHN----FVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDG 453

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + PN +T + L++  +N GL+ +A    +++ Q G  P+     +++      C+ ++  
Sbjct: 454 ICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHG---LCKVNKPN 510

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
            +   W +    +  G  Y  +T   S +     +++     F    +Y   D+    KP
Sbjct: 511 DM---WGIFADMIKRG--YVPDTVLYSIIIDGFVKALDLQEAF--RLYYKMVDE--GTKP 561

Query: 514 TTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              TY  L+   C D     V  L   M   GL+P+ I +T LI       N++ AL+
Sbjct: 562 NIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALE 619



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 6/188 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P+  +   IID      D  ++  +Y  +  +    NI+ + SL+N   HD K    + +
Sbjct: 526 PDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTL 585

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +K+M   G+  D   Y  L+   C   N   A EI+ E   +E +G L  D F Y+ ++ 
Sbjct: 586 FKHMIGEGLAPDRILYTSLIACYCKRSNMKAALEIFRE---METEG-LSADSFVYTCLIG 641

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F+       A    E+M++ G+TP  +T++ LI      G  ++AM ++  MLQAG  P
Sbjct: 642 GFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAMAMYNSMLQAGIAP 701

Query: 432 NSQCCNIL 439
           +++   IL
Sbjct: 702 DAKLSCIL 709



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 126/305 (41%), Gaps = 28/305 (9%)

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL----GVMADMASYN 328
           M +R++++D++S   + N+Y ++ LM++  H  K  LE    +       GV  + A+Y 
Sbjct: 193 MYARSLFDDMKSSGPSPNVYSYSVLMSMYTHGAKLCLEEALELLSEMEVEGVRPNAATYA 252

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
             L   C A      +  +  ++ L  +G    + + ++ ++  F        A++V + 
Sbjct: 253 TYLYGLCHAKQV---KSAWNFLQMLCQRG-YPCNNYCFNAVIHGFCHDGQVHKAIEVFDG 308

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M   G  P+  ++S L++     G V    ++  EM + G  PN    + LL     A +
Sbjct: 309 MKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGR 368

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRI---SNMEHKDKQSITNTPNFVPNSHYSSF 505
            + AF LF+     K Q   G  +D     I      +H D +   +  N + +      
Sbjct: 369 VELAFELFKRL---KDQ---GFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHH----- 417

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGN 563
               +F P    Y+ L+ A C      +AL     M + G+ PN ++ TIL+      G 
Sbjct: 418 ----NFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGL 473

Query: 564 VEGAL 568
           +  A 
Sbjct: 474 IGEAF 478



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 4/143 (2%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           +++ GV+  + +Y +++   C         +++G    +  +G +  D   YS I+  F 
Sbjct: 484 VRQFGVVPSLCTYRVIIHGLCKVNK---PNDMWGIFADMIKRGYVP-DTVLYSIIIDGFV 539

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            A   Q A ++   M+  G  PN  T++SLIN   +   + + M LF+ M+  G  P+  
Sbjct: 540 KALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPDRI 599

Query: 435 CCNILLQACVEACQFDRAFRLFR 457
               L+    +      A  +FR
Sbjct: 600 LYTSLIACYCKRSNMKAALEIFR 622


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+ + + G  A +  +NIL+   C  G+  +AQ ++  +     K  L+  V 
Sbjct: 106 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAI----TKWGLRPSVV 161

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  ML++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 162 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEM 221

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PNS     L+    +  + D A  ++                            
Sbjct: 222 LVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIY---------------------------- 253

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  +   L++EM   
Sbjct: 254 --KQMLSQ-----------------SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMK 294

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ I++T LID C   G+++ A + R
Sbjct: 295 GLKPDKITYTTLIDGCCKDGDLDTAFEHR 323



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 152/359 (42%), Gaps = 37/359 (10%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+D+ +F   +  + +   L  A+  Y  +++H        CR +++       +     
Sbjct: 52  RSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 111

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YE++       ++Y FN LM+      D++    V+  + K G+   + SYN L+    
Sbjct: 112 FYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYI 171

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 172 RLGD---LDEGFRLKSAMLASGV-QPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLV 227

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN++T+++LI+     G V+ AM ++++ML     P+    N L+    +     +A  L
Sbjct: 228 PNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 287

Query: 456 FRSWTL--------SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
               ++        + T +  G   DG+ D  +  EH+ +    NT              
Sbjct: 288 IDEMSMKGLKPDKITYTTLIDGCCKDGDLD--TAFEHRKRMIQENT-------------- 331

Query: 508 RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
               +     Y  L+   C +   V A  ++ EM +VGL P+  ++T++I+     G+V
Sbjct: 332 ----RLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 386



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +  IY+ + SQ+++ ++  +N+L+       DLK   
Sbjct: 228 PNSVTFTTLID--GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 285

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +   M   G+  D  +Y  L+  CC  G+   A E     K +  +   +LD   Y+ +
Sbjct: 286 HLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFE---HRKRMIQENT-RLDDVVYTAL 341

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +MLS G+ P+  T++ +IN     G V +   L +EM + G 
Sbjct: 342 ISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 401

Query: 430 EPNSQCCNILLQA 442
            P+    N+L+  
Sbjct: 402 VPSVVTYNVLMNG 414


>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 42/269 (15%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + K M+  G+  +  ++NIL+   C   N  +A +++ E   +  +GV K +V TY++++
Sbjct: 202 ILKEMKADGICPNEVTFNILIDGFCNDKNVSVAMKVFAE---MNRQGV-KPNVVTYNSLI 257

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
               +      A  +++ M+++ + PN IT ++L+N      +V+QA  LFE+M +    
Sbjct: 258 NGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRIT 317

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFR------------SWTLSKTQVALGEDYDGNTDR 478
           PN    NIL+ A  +    + AF L+R            ++      +    D +G  +R
Sbjct: 318 PNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNR 377

Query: 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALM 536
           +S M+ K                          K    TYNILM + C   +  +   L+
Sbjct: 378 VSEMDTK------------------------HLKADLITYNILMDSLCNKGEMKKTLRLL 413

Query: 537 NEMRTVGLSPNHISWTILIDACGGSGNVE 565
           +EM   GL P+ +++  +ID     GN+ 
Sbjct: 414 DEMCKKGLKPSQLTYNTMIDGYSKEGNLR 442



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 108/226 (47%), Gaps = 10/226 (4%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAI 278
           ++ F   +  F   +++  A++ +    +    PN+    ++I+  G+C  G   ++  +
Sbjct: 215 EVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLIN--GLCNNGKVNEATTL 272

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
            + + +  +  NI   N+L+N    +  +K   E++++M K  +  ++ +YNIL+ A C 
Sbjct: 273 RDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCK 332

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
             N   A  +Y   + +  KGV   DV TY+ ++         + A     +M +  +  
Sbjct: 333 DENMEDAFALY---RIMLGKGVYP-DVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKA 388

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           + IT++ L+++  N G +++ + L +EM + G +P+    N ++  
Sbjct: 389 DLITYNILMDSLCNKGEMKKTLRLLDEMCKKGLKPSQLTYNTMIDG 434


>gi|397621823|gb|EJK66480.1| hypothetical protein THAOC_12600 [Thalassiosira oceanica]
          Length = 820

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 155/371 (41%), Gaps = 50/371 (13%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDA---SKKHLS-SPNMYICRTIIDVCGICGDYMKSR 276
           +++   F R  G+ RD +SAL   +    S+ H + +P++ + +T++        + +  
Sbjct: 315 EVVITGFSRR-GRIRDALSALSRMEGQLDSEHHSNLNPSLSVYQTLLVSLASKQQFSQMN 373

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHD----LKFTLEVYKNMQK-LGVMADMASYNILL 331
            +   +R + V   +Y FN+L+ V A       +  + +    Q+  GV  D+ +Y   +
Sbjct: 374 TLLTSMRRRGVRPTVYTFNALLKVCASSKSPRWREAVSLLSQCQREPGVSPDIITYTSTM 433

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           +A         A +++  +K       ++LDVF Y+T +   A    W+ AL++ E+M  
Sbjct: 434 RALAKGKQARKALDLFRAMKDTG----IQLDVFAYTTTMDACAKTNNWKKALQLLEEMRE 489

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
             V PN +T+   +NAC N G  + A+ L + M  +G   NS   N  + A  +A + D 
Sbjct: 490 NNVPPNEVTYGVAVNACGNGGQWQTALSLLQTMNDSGMRINSITYNSAIAALSKAARLDA 549

Query: 452 AFRLFRSWTLSKTQVALGEDYD--------------------GNTDRISNMEHKDKQSIT 491
                  W   KTQ  LGE +                     G  +    + H+ K S T
Sbjct: 550 GPDPNVLW--EKTQHILGEMHSRGVRQDTFTYSSAISVCGSAGRWEEAVRLIHQMKDSGT 607

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISW 551
           N          +  +K  +F     T  I   A    +     L  EM+  GL+P+ +++
Sbjct: 608 NG---------TKRNKIVAF-----TSAITACANSKQWDPANQLFQEMKRDGLAPDLVAF 653

Query: 552 TILIDACGGSG 562
             LI A   +G
Sbjct: 654 NALIGAGMAAG 664



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 129/303 (42%), Gaps = 32/303 (10%)

Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230
           V  F  L++V    + P     E   ++  C  +P V+  I          I + + +R 
Sbjct: 388 VYTFNALLKVCASSKSP--RWREAVSLLSQCQREPGVSPDI----------ITYTSTMRA 435

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
             K +    AL  + A K      +++   T +D C    ++ K+  + E++R  NV  N
Sbjct: 436 LAKGKQARKALDLFRAMKDTGIQLDVFAYTTTMDACAKTNNWKKALQLLEEMRENNVPPN 495

Query: 291 IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN-------TV 341
              +   +N   N    +  L + + M   G+  +  +YN  + A   A          V
Sbjct: 496 EVTYGVAVNACGNGGQWQTALSLLQTMNDSGMRINSITYNSAIAALSKAARLDAGPDPNV 555

Query: 342 L---AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           L    Q I GE   + ++GV + D FTYS+ + V   A  W+ A+++   M  +G     
Sbjct: 556 LWEKTQHILGE---MHSRGV-RQDTFTYSSAISVCGSAGRWEEAVRLIHQMKDSGTNGTK 611

Query: 399 ----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
               + ++S I ACAN+   + A  LF+EM + G  P+    N L+ A + A + D  + 
Sbjct: 612 RNKIVAFTSAITACANSKQWDPANQLFQEMKRDGLAPDLVAFNALIGAGMAAGRPDEVYH 671

Query: 455 LFR 457
           L+R
Sbjct: 672 LWR 674


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 169/390 (43%), Gaps = 50/390 (12%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   V    K  D VSAL       +     N+ I   I+D     G+++K++ I+ +
Sbjct: 46  VTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTE 105

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  N+  +N +++      K++   ++ ++M +  +  D+ +++ L+ A    G 
Sbjct: 106 MHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGK 165

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVF----TYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
              A+E+Y E+        L+ ++F    TYS+++  F      + A  + + M+S G +
Sbjct: 166 VSGAEELYREM--------LRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCS 217

Query: 396 PNTITWSSLINACANA-----------GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           P+ IT ++LI+ C  A           G V  A  LF+EM+  G  P+   CN LL    
Sbjct: 218 PDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLC 277

Query: 445 EACQFDRAFRLFRSWTLSKTQVAL------------GEDYDGNTDRISNMEHKDKQSITN 492
           E  + ++A  +F+ +  SK  +              G   D   D  +++     ++   
Sbjct: 278 ENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVV 337

Query: 493 TPN-----FVPNSHYSSFDKRF------SFKPTTTTYNILMKACCTD--YYRVKALMNEM 539
           T N     FV   ++   +  +         P+T TYN ++   C        + +++ M
Sbjct: 338 TYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSM 397

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            + G SP+ ++++ LI     +G V+  L+
Sbjct: 398 VSEGCSPDVVTFSTLIKGYCKAGRVDDGLE 427



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 17/248 (6%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC---------GIC--G 270
           I + + +  F K   L  A   +D       SP++    T+ID C         G C  G
Sbjct: 186 ITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVG 245

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           +   ++ +++++ S  V+ +I   N+L+        L+  LE++K  QK  +  D A+ N
Sbjct: 246 NVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCN 305

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           I++   C  GN V   E +     L   GV + DV TY+ ++ VF     +  A  +  +
Sbjct: 306 IIINGMC-KGNKV--DEAWDLFNSLPVNGV-ETDVVTYNILIGVFVKEGNFLRAEDIYLE 361

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           ML  G+ P+T+T++S+++       +E+A  + + M+  GC P+    + L++   +A +
Sbjct: 362 MLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGR 421

Query: 449 FDRAFRLF 456
            D    LF
Sbjct: 422 VDDGLELF 429



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 103/233 (44%), Gaps = 10/233 (4%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKS 275
           P   + F   +    ++  ++ AL   D   +    P+     TI++  G+C  GD + +
Sbjct: 7   PANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVN--GMCKLGDTVSA 64

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKA 333
             +   +    +  N+ +++++++    D        ++  M + G+  ++ +YN ++  
Sbjct: 65  LNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDG 124

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C  G    A+++  ++        +  DV T+S ++  F        A ++  +ML   
Sbjct: 125 YCSYGKWSDAEQLLRDMIERN----IDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           + P TIT+SS+I+       +E A H+F+ M+  GC P+    N L+  C  A
Sbjct: 181 IFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRA 233



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 17/221 (7%)

Query: 221 DILFCNFVR----EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           DI+ CN +     E GK    +   + +  SK  L +     C  II+  G+C       
Sbjct: 265 DIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTAT---CNIIIN--GMCKGNKVDE 319

Query: 277 A--IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
           A  ++  L    V  ++  +N L+ V   +  F    ++Y  M   G++    +YN ++ 
Sbjct: 320 AWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVD 379

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C       A+++   V  + ++G    DV T+ST++K +  A      L++  +M   
Sbjct: 380 GFCKQNRLEEARQM---VDSMVSEGC-SPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQR 435

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           G+  +TIT+++LI+     G +  A  +FEEM+ +G  P++
Sbjct: 436 GLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDT 476



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 83/160 (51%), Gaps = 6/160 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G+++++  IY ++  + +  +   +NS+++     + L+   ++  +M   G   D+ ++
Sbjct: 350 GNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTF 409

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           + L+K  C AG      E++ E+     +G++  D  TY+ ++  F        A  + E
Sbjct: 410 STLIKGYCKAGRVDDGLELFSEMCQ---RGLVA-DTITYNALIHGFCKVGDLNGAQDIFE 465

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           +M+S+GV P+TIT+ S++        +++ + + E++ ++
Sbjct: 466 EMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDLQKS 505



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 18/183 (9%)

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M+  G   N +T+++L+N     G V QA+ L + M++ G +P++     ++    +   
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 449 FDRAFRLFRSWTLS--KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
              A  + R    S  K  V +   Y    DR+     KD   I     F        F 
Sbjct: 61  TVSALNMLRKMDESQIKANVVI---YSAIVDRLC----KDGNHIKAQNIFTEMHEKGIF- 112

Query: 507 KRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
                 P   TYN ++   C+   +   + L+ +M    + P+ ++++ LI+A    G V
Sbjct: 113 ------PNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKV 166

Query: 565 EGA 567
            GA
Sbjct: 167 SGA 169


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 151/341 (44%), Gaps = 28/341 (8%)

Query: 231 FGKKRDLVSALRAYD---ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           F KK DL  ALRA+D     K + S  +  +   II + G  G    +  ++  L+    
Sbjct: 147 FHKKFDL--ALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGF 204

Query: 288 TLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
           +L++Y + SL++  A+  ++   + V+K M++ G    + +YN++L      G      +
Sbjct: 205 SLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTP--WNK 262

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           I   V+ +++ G+   D +TY+T++         Q A +V E+M +AG + + +T+++L+
Sbjct: 263 ITSLVEKMKSDGIAP-DAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALL 321

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           +    +   ++AM +  EM+  G  P+    N L+ A       D A  L        T+
Sbjct: 322 DVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTK 381

Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILMK 523
                D    T  +S  E   K            S  S F+  +    KP   T+N  +K
Sbjct: 382 ----PDVFTYTTLLSGFERAGKVE----------SAMSIFEEMRNAGCKPNICTFNAFIK 427

Query: 524 ACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
                  +  +  + +E+   GLSP+ ++W  L+   G +G
Sbjct: 428 MYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNG 468



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + + + +  + +   L  A+   +   +  + P+++   T++      G    + +I+E+
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEE 409

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R+     NI  FN+ + +  +  KFT  ++++  +   G+  D+ ++N LL    + G 
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLL---AVFGQ 466

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             +  E+ G  K ++  G +  +  T++T++  ++    ++ A+ V   ML AGVTP+  
Sbjct: 467 NGMDSEVSGVFKEMKRAGFVP-ERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLS 525

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           T+++++ A A  G+ EQ+  +  EM    C+PN      LL A
Sbjct: 526 TYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHA 568



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 150/346 (43%), Gaps = 36/346 (10%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  F +   + SA+  ++  +     PN+      I + G  G + +   I++++ 
Sbjct: 387 YTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEIN 446

Query: 284 SQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
              ++ +I  +N+L+ V   N  D + +  V+K M++ G + +  ++N L+ A    G+ 
Sbjct: 447 VCGLSPDIVTWNTLLAVFGQNGMDSEVS-GVFKEMKRAGFVPERETFNTLISAYSRCGSF 505

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A  +Y   + +   GV   D+ TY+T++   A    W+ + KV  +M      PN +T
Sbjct: 506 EQAMTVY---RRMLDAGVTP-DLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELT 561

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC-------QFDRAF 453
           + SL++A AN   +     L EE+     EP +    +LL+  V  C       + +RAF
Sbjct: 562 YCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRA----VLLKTLVLVCSKCDLLPEAERAF 617

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
              +    S     L           S +    ++ +    N V +     + K   F P
Sbjct: 618 SELKERGFSPDITTLN----------SMVSIYGRRQMVAKANGVLD-----YMKERGFTP 662

Query: 514 TTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           +  TYN L  M +   D+ + + ++ E+   G+ P+ IS+  +I A
Sbjct: 663 SMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYA 708



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 105/236 (44%), Gaps = 7/236 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
           + + +  F        A+  +   ++    P +     I++V G  G  + K  ++ E +
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM 270

Query: 283 RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           +S  +  + Y +N+L+         +   +V++ M+  G   D  +YN LL    + G +
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLD---VYGKS 327

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
              +E    +  +   G     + TY++++  +A       A+++K  M   G  P+  T
Sbjct: 328 HRPKEAMKVLNEMVLNG-FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFT 386

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +++L++    AG VE AM +FEEM  AGC+PN    N  ++      +F    ++F
Sbjct: 387 YTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 110/242 (45%), Gaps = 41/242 (16%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +P+ Y   T+I  C     + ++  ++E++++   + +   +N+L++V   +H  K  ++
Sbjct: 276 APDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMK 335

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V   M   G    + +YN L+ A    G  +L + +  E+K+  A+   K DVFTY+T++
Sbjct: 336 VLNEMVLNGFSPSIVTYNSLISAYARDG--MLDEAM--ELKNQMAEKGTKPDVFTYTTLL 391

Query: 371 KVFADAKWWQMALKVKEDMLSAG-----------------------------------VT 395
             F  A   + A+ + E+M +AG                                   ++
Sbjct: 392 SGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLS 451

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +TW++L+      G+  +   +F+EM +AG  P  +  N L+ A      F++A  +
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511

Query: 456 FR 457
           +R
Sbjct: 512 YR 513



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE--V 311
           P   + +T++ VC  C    ++   + +L+ +  + +I   NS++++            V
Sbjct: 592 PRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGV 651

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M++ G    MA+YN L+     + +   ++EI   ++ + AKG+ K D+ +Y+T++ 
Sbjct: 652 LDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEI---LREILAKGI-KPDIISYNTVIY 707

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +      + A ++  +M ++G+ P+ IT+++ I + A   + E+A+ +   M++ GC P
Sbjct: 708 AYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRP 767

Query: 432 NSQCCNILLQACVEACQFDRAFRLF 456
           N    N ++    +  + D A +LF
Sbjct: 768 NQNTYNSIVDGYCKLNRKDEA-KLF 791



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 23/217 (10%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV-EQA 417
             LDV++Y++++  FA++  ++ A+ V + M   G  P  IT++ ++N     G    + 
Sbjct: 204 FSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKI 263

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
             L E+M   G  P++   N L+  C        A ++F          A G  YD  T 
Sbjct: 264 TSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMK------AAGFSYDKVTY 317

Query: 478 R----ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK 533
                +    H+ K+++      V N           F P+  TYN L+ A   D    +
Sbjct: 318 NALLDVYGKSHRPKEAMKVLNEMVLN----------GFSPSIVTYNSLISAYARDGMLDE 367

Query: 534 A--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           A  L N+M   G  P+  ++T L+     +G VE A+
Sbjct: 368 AMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 101/213 (47%), Gaps = 7/213 (3%)

Query: 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
             I PRA +L    V    K   L  A RA+   K+   SP++    +++ + G      
Sbjct: 588 GVIEPRA-VLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVA 646

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILL 331
           K+  + + ++ +  T ++  +NSLM +++    F  + E+ + +   G+  D+ SYN ++
Sbjct: 647 KANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVI 706

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            A C       A  I+ E+++    G++  DV TY+T +  +A    ++ A+ V   M+ 
Sbjct: 707 YAYCRNTRMRDASRIFSEMRN---SGIVP-DVITYNTFIGSYAADSMFEEAIGVVRYMIK 762

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            G  PN  T++S+++        ++A    E++
Sbjct: 763 HGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDL 795


>gi|297737146|emb|CBI26347.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 106/220 (48%), Gaps = 15/220 (6%)

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           L+ KG  +L+V  Y+ ++++   A+ W     + ++M+S G+TP   T+ +LI+  +  G
Sbjct: 186 LKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGG 245

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL---SKTQVALG 469
           L E+A+H  + M + G EP+     +++Q   +A +F +A + F++W+L   S+  V L 
Sbjct: 246 LTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLESASQPHVCLS 305

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-- 527
             Y  NT  + +   K  Q    +  F       ++  R    P T T+N ++  C    
Sbjct: 306 -SYTYNT--LIDTYGKAGQLREASDTF-------AWMLREGIIPNTVTFNTMIHICGNHG 355

Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                 +LM +M  +   P+  ++ ILI       N++ A
Sbjct: 356 QLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRA 395



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 97/199 (48%), Gaps = 3/199 (1%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLG 319
           ++ + G    +    ++++++ S+ +T     + +L++V +     +  L     M K G
Sbjct: 202 MLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLDRMNKQG 261

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKW 378
           +  D  +  ++++    AG    A++ +       A +  + L  +TY+T++  +  A  
Sbjct: 262 MEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLESASQPHVCLSSYTYNTLIDTYGKAGQ 321

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            + A      ML  G+ PNT+T++++I+ C N G +E+A  L ++M +  C P+++  NI
Sbjct: 322 LREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNI 381

Query: 439 LLQACVEACQFDRAFRLFR 457
           L+    +    DRA   F+
Sbjct: 382 LISLHAKHNNIDRAASYFK 400



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 14/203 (6%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-----HDLKFTLEVYKNMQ 316
           +I   GI   Y K+  + + + +  V  + + +NSL+ + A     H  KF L     MQ
Sbjct: 520 MIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYL---MKMQ 576

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  +++D   Y  ++ +    G   +A+ ++ E+        ++ DV  Y  ++  FAD 
Sbjct: 577 ETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGYN----VQPDVVVYGILINAFADV 632

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPNSQC 435
              + A+     + +AG+  N + ++SLI      G +E+A   + +MLQA    P+   
Sbjct: 633 GNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAY-KMLQASEVGPDVYS 691

Query: 436 CNILLQACVEACQFDRAFRLFRS 458
            N ++    E     +A  +F S
Sbjct: 692 SNCMIDLYSERSMVKQAEEIFES 714


>gi|15233137|ref|NP_191711.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183498|sp|Q9M316.1|PP292_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g61520, mitochondrial; Flags: Precursor
 gi|6850843|emb|CAB71082.1| putative protein [Arabidopsis thaliana]
 gi|332646696|gb|AEE80217.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 766

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 117/258 (45%), Gaps = 42/258 (16%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +YN L+   C AG    A+E+   +K  E    +K +V T +TIV          MA+  
Sbjct: 408 TYNCLIDGYCRAGKLETAKEVVSRMKEDE----IKPNVVTVNTIVGGMCRHHGLNMAVVF 463

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             DM   GV  N +T+ +LI+AC +   VE+AM+ +E+ML+AGC P+++    L+    +
Sbjct: 464 FMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQ 523

Query: 446 ACQFDRAFRLFR-------SWTLSKTQVALGEDYD-GNTDRI----SNMEHKDKQSITNT 493
             +   A R+         S  L    + +G   D  NT+++    ++ME + K      
Sbjct: 524 VRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGK------ 577

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISW 551
                             KP + TYN L+       D+  V+ +M +MR  GL P   ++
Sbjct: 578 ------------------KPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTY 619

Query: 552 TILIDACGGSGNVEGALQ 569
             +IDA    G ++ AL+
Sbjct: 620 GAVIDAYCSVGELDEALK 637



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 132/358 (36%), Gaps = 74/358 (20%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +PN      +ID     G    ++ +   ++   +  N+   N+++      H L   + 
Sbjct: 403 APNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVV 462

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA--------------- 355
            + +M+K GV  ++ +Y  L+ ACC   N  + + +Y   K LEA               
Sbjct: 463 FFMDMEKEGVKGNVVTYMTLIHACCSVSN--VEKAMYWYEKMLEAGCSPDAKIYYALISG 520

Query: 356 ------------------KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
                             +G   LD+  Y+ ++ +F D    +   ++  DM   G  P+
Sbjct: 521 LCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPD 580

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           +IT+++LI+        E    + E+M + G +P       ++ A     + D A +LF+
Sbjct: 581 SITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFK 640

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN--SHYSSFDKRFSFK--- 512
              L                      H      T   N + N  S   +F +  S K   
Sbjct: 641 DMGL----------------------HSKVNPNTVIYNILINAFSKLGNFGQALSLKEEM 678

Query: 513 ------PTTTTYNILMKACCTDYYRVKAL---MNEMRTVGLSPNHISWTILIDACGGS 561
                 P   TYN L K C  +  + + L   M+EM      PN I+  IL++   GS
Sbjct: 679 KMKMVRPNVETYNALFK-CLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGS 735


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+ + + G  A +  +NIL+   C  G+  +AQ ++  +     K  L+  V 
Sbjct: 123 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAI----TKWGLRPSVV 178

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  ML++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 179 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEM 238

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PNS     L+    +  + D A  ++                            
Sbjct: 239 LVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIY---------------------------- 270

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  +   L++EM   
Sbjct: 271 --KQMLSQ-----------------SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMK 311

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ I++T LID C   G+++ A + R
Sbjct: 312 GLKPDKITYTTLIDGCCKDGDLDTAFEHR 340



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 152/359 (42%), Gaps = 37/359 (10%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+D+ +F   +  + +   L  A+  Y  +++H        CR +++       +     
Sbjct: 69  RSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YE++       ++Y FN LM+      D++    V+  + K G+   + SYN L+    
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 189 RLGD---LDEGFRLKSAMLASGV-QPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLV 244

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN++T+++LI+     G V+ AM ++++ML     P+    N L+    +     +A  L
Sbjct: 245 PNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 304

Query: 456 FRSWTL--------SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
               ++        + T +  G   DG+ D  +  EH+ +    NT              
Sbjct: 305 IDEMSMKGLKPDKITYTTLIDGCCKDGDLD--TAFEHRKRMIQENT-------------- 348

Query: 508 RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
               +     Y  L+   C +   V A  ++ EM +VGL P+  ++T++I+     G+V
Sbjct: 349 ----RLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 403



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/347 (20%), Positives = 133/347 (38%), Gaps = 55/347 (15%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           C  P +   F   +  F K  D+  A   +DA  K    P++    T+++     GD  +
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
              +   + +  V  ++Y ++ L+N    + K     E++  M   G++ +  ++  L+ 
Sbjct: 196 GFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLID 255

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G   LA EIY                                       + MLS 
Sbjct: 256 GHCKNGRVDLAMEIY---------------------------------------KQMLSQ 276

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            ++P+ IT+++LI      G ++QA HL +EM   G +P+      L+  C +    D A
Sbjct: 277 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTA 336

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
           F   +      T++    D    T  IS +  ++ QS+                     K
Sbjct: 337 FEHRKRMIQENTRL----DDVVYTALISGL-CREGQSVDAEKMLREML-------SVGLK 384

Query: 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           P   TY +++   C   D ++   L+ EM+  G  P+ +++ +L++ 
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|357480587|ref|XP_003610579.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511634|gb|AES92776.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 706

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 118/239 (49%), Gaps = 7/239 (2%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           D+ +   +  +GK  D+  AL  YD ++            T+I + G+ G+Y     +YE
Sbjct: 251 DVTYSVMIDSYGKAGDIDMALNLYDRARTEKWRIEPATFSTLIKMYGVAGNYDGCLNVYE 310

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++++  V  N+ V+N+L++    A        +YK M    ++ + A+Y  LL A   A 
Sbjct: 311 EMKALGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEMINNDILPNRATYASLLHAYGRAR 370

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TPN 397
               A  +Y E++  E    + L+   Y++++ + AD  +  +A ++ EDM S+   +P+
Sbjct: 371 FCEDALVVYREMREKE----MDLNTHLYNSLLAMCADVGYTDLAFEIFEDMKSSDTCSPD 426

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           + T+SSLI   + +G V +A  +  EM+++G EP       L+Q   +A + D   + F
Sbjct: 427 SWTFSSLITIYSCSGRVSEAERMMNEMIESGFEPTIFVLTSLVQCYGKAKRTDDVVKTF 485



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 103/219 (47%), Gaps = 5/219 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   ++ +G   +    L  Y+  K     PN+ +  T++D  G      ++R IY+++ 
Sbjct: 289 FSTLIKMYGVAGNYDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEMI 348

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           + ++  N   + SL++    A   +  L VY+ M++  +  +   YN LL  C   G T 
Sbjct: 349 NNDILPNRATYASLLHAYGRARFCEDALVVYREMREKEMDLNTHLYNSLLAMCADVGYTD 408

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
           LA EI+ ++K   +      D +T+S+++ +++ +     A ++  +M+ +G  P     
Sbjct: 409 LAFEIFEDMK---SSDTCSPDSWTFSSLITIYSCSGRVSEAERMMNEMIESGFEPTIFVL 465

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           +SL+     A   +  +  F ++L  G EP+ + C  LL
Sbjct: 466 TSLVQCYGKAKRTDDVVKTFNQLLDMGIEPDDRFCGCLL 504



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 121/273 (44%), Gaps = 21/273 (7%)

Query: 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID 264
           P V   ++   I  R  IL+   ++ F K +DL  A + +    +    P+     TII 
Sbjct: 165 PFVLQYVQRKSIPTREVILYNVTLKVFRKCKDLDGAEKVFGEMLQRGVKPDNVTFSTIIS 224

Query: 265 VCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGV 320
               C  Y+  +A+  +E +       +   ++ +++    A D+   L +Y   +    
Sbjct: 225 CARSC--YLPDKAVEWFEKMPLFGCEPDDVTYSVMIDSYGKAGDIDMALNLYDRARTEKW 282

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             + A+++ L+K   +AGN      +Y E+K L   GV K ++  Y+T++     AK   
Sbjct: 283 RIEPATFSTLIKMYGVAGNYDGCLNVYEEMKAL---GV-KPNLVVYNTLLDAMGRAKRPW 338

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A  + ++M++  + PN  T++SL++A   A   E A+ ++ EM +   + N+   N LL
Sbjct: 339 QARTIYKEMINNDILPNRATYASLLHAYGRARFCEDALVVYREMREKEMDLNTHLYNSLL 398

Query: 441 QACVEACQFDRAFRLFR-----------SWTLS 462
             C +    D AF +F            SWT S
Sbjct: 399 AMCADVGYTDLAFEIFEDMKSSDTCSPDSWTFS 431



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 97/233 (41%), Gaps = 38/233 (16%)

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +++++ K +   +V  Y+  +KVF   K    A KV  +ML  GV P+ +T+S++I+   
Sbjct: 168 LQYVQRKSIPTREVILYNVTLKVFRKCKDLDGAEKVFGEMLQRGVKPDNVTFSTIISCAR 227

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-----RSWTLSKT 464
           +  L ++A+  FE+M   GCEP+    ++++ +  +A   D A  L+       W +   
Sbjct: 228 SCYLPDKAVEWFEKMPLFGCEPDDVTYSVMIDSYGKAGDIDMALNLYDRARTEKWRIEPA 287

Query: 465 QVA-------LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
             +       +  +YDG  +    M                        K    KP    
Sbjct: 288 TFSTLIKMYGVAGNYDGCLNVYEEM------------------------KALGVKPNLVV 323

Query: 518 YNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           YN L+ A       ++ + +  EM    + PN  ++  L+ A G +   E AL
Sbjct: 324 YNTLLDAMGRAKRPWQARTIYKEMINNDILPNRATYASLLHAYGRARFCEDAL 376


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 117/231 (50%), Gaps = 15/231 (6%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTL 289
           G+ +D   A + +D  ++   S N+    T+I   G+C +   + A  + + ++S  +  
Sbjct: 282 GRTKD---AFKLFDEMRERGVSCNIVTYNTLIG--GLCREMKANEANKVMDQMKSDGINP 336

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  +N+L++       L   L + ++++  G+   + +YNIL+   C  G+T  A ++ 
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKV- 395

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             VK +E +G+ K    TY+ ++  FA     + A++++  M   G+TP+  T+S LI+ 
Sbjct: 396 --VKEMEERGI-KPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHG 452

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCN-ILLQACVEACQFDRAFRLFR 457
               G + +A  LF+ M+    EPN    N ++L  C E   + RA RLFR
Sbjct: 453 FCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSY-RALRLFR 502



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 152/362 (41%), Gaps = 53/362 (14%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           E  K  DL+  LR +  S      PN+ I  T+ID C   G+  K++ ++ ++    +  
Sbjct: 178 EIEKSFDLLVELREFGFS------PNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVA 231

Query: 290 NIYVFNSLMNVNAHDL------KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
           N + +  L+    H L      K   E+Y+ MQ+ GV  ++ +YN ++   C  G T  A
Sbjct: 232 NEWTYTVLI----HGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDA 287

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            +++ E++    +GV   ++ TY+T++           A KV + M S G+ PN IT+++
Sbjct: 288 FKLFDEMRE---RGV-SCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNT 343

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--- 460
           LI+     G + +A+ L  ++   G  P+    NIL+    +      A ++ +      
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERG 403

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP----NFVPNSH-YSSFDKRFSFK--- 512
           +  +++     Y    D  + M++ +K     +P       P+ H YS     F  K   
Sbjct: 404 IKPSKIT----YTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQM 459

Query: 513 ----------------PTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTIL 554
                           P    YN ++   C +   YR   L  EM    L PN  S+  +
Sbjct: 460 NEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYM 519

Query: 555 ID 556
           I+
Sbjct: 520 IE 521



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 125/292 (42%), Gaps = 26/292 (8%)

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           V L++Y F  ++     A +++ + ++   +++ G   ++  Y  L+  CC  G    A+
Sbjct: 159 VDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAK 218

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           +++ E+     K  L  + +TY+ ++         +   ++ E M   GV PN  T++ +
Sbjct: 219 DLFFEM----GKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCV 274

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVE--ACQFDRAFRLFRSWTL 461
           +N     G  + A  LF+EM + G   N    N L+   C E  A + ++     +S  +
Sbjct: 275 MNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGI 334

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
           +   +      DG          K  ++++   +           K     P+  TYNIL
Sbjct: 335 NPNLITYNTLIDGFCGV-----GKLGKALSLCRDL----------KSRGLSPSLVTYNIL 379

Query: 522 MKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           +   C   D      ++ EM   G+ P+ I++TILID      N+E A+Q R
Sbjct: 380 VSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLR 431



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 19/223 (8%)

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
           E+K  + LDV+++  ++K   +A   + +  +  ++   G +PN + +++LI+ C   G 
Sbjct: 154 ESKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGE 213

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
           +E+A  LF EM + G   N     +L+    +     + F ++           L   Y 
Sbjct: 214 IEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNL---YT 270

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILMKACCTDYYR 531
            N   + N   KD ++            +  FD  +         TYN L+   C +   
Sbjct: 271 YNC--VMNQHCKDGRT---------KDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKA 319

Query: 532 VKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ-CR 571
            +A  +M++M++ G++PN I++  LID   G G +  AL  CR
Sbjct: 320 NEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCR 362



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKL 318
           I V G C  GD   +  + +++  + +  +   +  L++  A   +++  +++   M++L
Sbjct: 378 ILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEEL 437

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEV--KHLEAKGVLKLDVFTYSTIVKVFADA 376
           G+  D+ +Y++L+   C+ G    A  ++  +  K LE   V+      Y+T+V  +   
Sbjct: 438 GLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVI------YNTMVLGYCKE 491

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                AL++  +M    + PN  ++  +I         ++A  L E+M+  G +P+    
Sbjct: 492 GSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSIL 551

Query: 437 NILLQA 442
           N++ +A
Sbjct: 552 NLISRA 557


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 140/323 (43%), Gaps = 37/323 (11%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN  +  T+ID  G C    + +++ ++ D+    V   + V+NSLM+    + D +  L
Sbjct: 281 PNAVVFTTLID--GFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEAL 338

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +Y+ M +LG+  D  + +I+++  C  G   +A      V+     GV  L+   Y+ +
Sbjct: 339 SLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVRE---DGV-NLNAAAYNAL 394

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +      + AL     M   GV PN +++SSLI+  +  G ++ AM ++ EM+  G 
Sbjct: 395 IDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGI 454

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDG--NTDRISN--- 481
           EPN      L+    +    D AFR  +      +S   + +    DG    +R+ +   
Sbjct: 455 EPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVR 514

Query: 482 --MEHKDKQSITNTPNFVPNSHYSSFDKRFSFK-----PTTTTYNILMKACCTD--YYRV 532
             MEH            +  S   SF   F+ +     P +  Y  L+     D  +Y  
Sbjct: 515 FVMEHSG----------IKYSDIHSFFSNFTTEEEPLIPNSAIYMTLIYGLYLDGQHYEA 564

Query: 533 KALMNEMRTVGLSPNHISWTILI 555
             L + MR  G+  +  ++T+LI
Sbjct: 565 GKLFSYMRKSGMISDSFTYTLLI 587



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 105/270 (38%), Gaps = 53/270 (19%)

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           V A   +   E++  M + G++  + +YN L+ AC   G    AQE++ ++   +    +
Sbjct: 154 VKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQ----I 209

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             +V TY++++ V  +      A ++ + M  AG+ PN  T++ L++       V  A  
Sbjct: 210 DPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFV 269

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           L++E+L +G  PN+     L+    +A +F  A  +FR                      
Sbjct: 270 LYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDM-------------------- 309

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMN 537
                                       RF   PT   YN LM       D     +L  
Sbjct: 310 ---------------------------PRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQ 342

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           EM  +GL P+  + +I++      G ++ A
Sbjct: 343 EMTRLGLCPDEFTCSIVVRGLCDGGQIQVA 372


>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
 gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
          Length = 546

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 127/271 (46%), Gaps = 37/271 (13%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   +  +G+   L  A+      +     P++ I  T+I++ G   DY K+ +++  L+
Sbjct: 63  FSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLK 122

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTLE---VYKNMQKLGVMADMASYNILLKACCLAGNT 340
           +  +  +  ++NS++N+     KF  E   +   M++ G+M D  SY IL+ A   +   
Sbjct: 123 ASGIAPDKVIYNSMINLYGK-AKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKY 181

Query: 341 VLAQEIYGEVK-------------HLEAKGVLKL-------------------DVFTYST 368
           + A++++ E+K              ++  G L++                   +V TY+T
Sbjct: 182 LEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNT 241

Query: 369 IVKVFADAKWWQMALKVKEDMLS-AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           ++KV+ +A+    A  V   M +  GV PN IT+++++         E+AM L  +M Q 
Sbjct: 242 MIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQR 301

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           G EPN+   + L+    +  ++DRA  LF++
Sbjct: 302 GIEPNAVTYSTLISIYGKTGKYDRAAFLFKT 332



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/255 (20%), Positives = 109/255 (42%), Gaps = 44/255 (17%)

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
           G ++ +EA G+ K D+  +ST++++    K +  A  +   + ++G+ P+ + ++S+IN 
Sbjct: 81  GWLQEMEAGGI-KPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINL 139

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS--------- 458
              A   ++A  L  EM +AG  P++    IL+ A  E+ ++  A ++F           
Sbjct: 140 YGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLD 199

Query: 459 ------------------------WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
                                   W++SKT   LG   +  T       +K+ + ++   
Sbjct: 200 VTTCNMMIDVYGKLEMVRDAEELFWSMSKT---LGIQQNVVTYNTMIKVYKEAELLSEAF 256

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSPNHISWT 552
           N      +     +   +P   TYN  + +      + +   L+ +M+  G+ PN ++++
Sbjct: 257 NV-----FYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYS 311

Query: 553 ILIDACGGSGNVEGA 567
            LI   G +G  + A
Sbjct: 312 TLISIYGKTGKYDRA 326



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 104/202 (51%), Gaps = 12/202 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEV 311
           P+      +I+       Y++++ ++ +++++ + L++   N +++V      ++   E+
Sbjct: 163 PDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEEL 222

Query: 312 YKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + +M K LG+  ++ +YN ++K    A    L  E +    +++ KG ++ +V TY+TI+
Sbjct: 223 FWSMSKTLGIQQNVVTYNTMIKVYKEAE---LLSEAFNVFYYMQNKGGVEPNVITYNTIL 279

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            +       + A+++   M   G+ PN +T+S+LI+     G  ++A  LF+ + + G E
Sbjct: 280 FLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFE 339

Query: 431 PNSQCCNILLQACVEACQFDRA 452
            +     IL Q+ +    ++RA
Sbjct: 340 MD----EILYQSMI--VVYERA 355



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 24/235 (10%)

Query: 228 VREFGKKRDLVS---ALRAYDASKKHLSSPNMYI-------------CRTIIDVCGICGD 271
           ++E G   D VS    + AY  S+K+L +  +++             C  +IDV G    
Sbjct: 156 MKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEM 215

Query: 272 YMKSRAIYEDL-RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ-KLGVMADMASY 327
              +  ++  + ++  +  N+  +N+++ V   A  L     V+  MQ K GV  ++ +Y
Sbjct: 216 VRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITY 275

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N +L    L G T+  ++    V+ ++ +G+ + +  TYST++ ++     +  A  + +
Sbjct: 276 NTIL---FLHGLTLQHEKAMRLVRKMQQRGI-EPNAVTYSTLISIYGKTGKYDRAAFLFK 331

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            +   G   + I + S+I     AGLV  A  L EE+ Q    P     +IL +A
Sbjct: 332 TLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRDTAISILAKA 386



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 93/206 (45%), Gaps = 10/206 (4%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE-- 310
            PN+    TI+ + G+   + K+  +   ++ + +  N   +++L+++     K+     
Sbjct: 269 EPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAF 328

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++K +++ G   D   Y  ++     AG    A+ +  E+K        + D+    T +
Sbjct: 329 LFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELK--------QPDIVPRDTAI 380

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            + A A+  + A K+      AG    ++T+ S+I         + A+ +FE M ++G  
Sbjct: 381 SILAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFVRNKRSKNAIDVFENMRESGFL 440

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
           P+S+   +LL A  +  Q + A +L+
Sbjct: 441 PDSETTVVLLAAYGQLRQLEDAEKLY 466


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1429

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 121/269 (44%), Gaps = 22/269 (8%)

Query: 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVS----------------ALRAYDASKKH 250
           +N  ++   + P   I   N VR  G + D+++                A++ +D  + H
Sbjct: 252 INARLKAGAMTPNVAIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAH 311

Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFT 308
              P+++    +I V G CG   K+  ++++L S+    +   +NSL+   A +  +   
Sbjct: 312 YCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKV 371

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            E+   M ++G + D  +YN ++      G   LA ++Y ++K L  +     D  TY+ 
Sbjct: 372 KEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMK-LSGRTP---DAITYTV 427

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++     A     A  V  +ML+ GV P   T+S+LI   A AG   +A   F+ M ++G
Sbjct: 428 LIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSG 487

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
             P+    +++L   +   +  +A  L+R
Sbjct: 488 IRPDQLAYSVMLDVFLRFDEATKAMMLYR 516



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 140/302 (46%), Gaps = 24/302 (7%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQK 317
           ++ V    G + K + + + +R +    ++  FN+L+N      A      +E+   +++
Sbjct: 216 MMGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELLNEVRR 275

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            G+  D+ +YN L+ AC    N   A +++ +   +EA    + D++TY+ ++ V+    
Sbjct: 276 SGLRPDIITYNTLISACSRESNLEEAVKVFDD---MEAH-YCQPDLWTYNAMISVYGRCG 331

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
           +   A ++ +++ S G  P+ +T++SL+ A A  G V++   +  EM+Q G   +    N
Sbjct: 332 FSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYN 391

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT-DRISNMEHKDKQSITNTPNF 496
            ++    +  Q   A +L+R   LS           G T D I+     D  S+      
Sbjct: 392 TIIHMYGKQGQHGLALQLYRDMKLS-----------GRTPDAITYTVLID--SLGKANKM 438

Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTIL 554
           V  ++  S       KPT  TY+ L+        R++A    + MR  G+ P+ ++++++
Sbjct: 439 VEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVM 498

Query: 555 ID 556
           +D
Sbjct: 499 LD 500



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 109/274 (39%), Gaps = 30/274 (10%)

Query: 306 KFTLE---VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
           +FT E   ++ +M+  GV    + Y  ++   C  G    A  +  ++  +E     K+ 
Sbjct: 678 EFTAEASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAHYLI-DLAEIEGMPFDKIS 736

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           +     +++ +   K WQ A  +  ++       +   W++LI A A +G  EQA  +F 
Sbjct: 737 IDV--AVIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGCYEQARAVFN 794

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR-----SWTLSKTQVALGEDYDGNTD 477
            M++ G  P     N LLQA +   + +  + + +      + +SK+ + L  D      
Sbjct: 795 TMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLILDAFA--- 851

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKAL 535
           R+SN+    K              Y    K   + PT   Y I++   C       V+A+
Sbjct: 852 RVSNIAEAKK-------------IYQGM-KAAGYFPTMHLYRIMIGLLCKGKRVRDVEAM 897

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           + EM   G  P+   W  ++    G  +    +Q
Sbjct: 898 VTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQ 931



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 93/212 (43%), Gaps = 6/212 (2%)

Query: 231  FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
            F +  ++  A + Y   K     P M++ R +I +           A+  ++       +
Sbjct: 850  FARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPD 909

Query: 291  IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            + ++NS++ +     D + T+++Y+ +++ G+  D  +YN L+   C          +  
Sbjct: 910  LSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMH 969

Query: 349  EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            E++ +  +   KLD  TY +++  F   +    A ++ E++LS G   +   +  ++   
Sbjct: 970  EMRRIGLEP--KLD--TYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIY 1025

Query: 409  ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
             N+G   +A  L   M  AG EP     ++L+
Sbjct: 1026 RNSGNHSKAEKLLSMMKDAGVEPTIATMHLLM 1057



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/321 (19%), Positives = 127/321 (39%), Gaps = 40/321 (12%)

Query: 262  IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLG 319
            I+D      +  +++ IY+ +++      ++++  ++ +      ++    +   M++ G
Sbjct: 846  ILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAG 905

Query: 320  VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
               D++ +N +L+      +     +IY  +K    +  L+ D  TY+T++ ++      
Sbjct: 906  FRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIK----EDGLQPDEDTYNTLIVMYCRDHRP 961

Query: 380  QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
            +    +  +M   G+ P   T+ SLI A     LV  A  LFEE+L  G + +    +I+
Sbjct: 962  EEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIM 1021

Query: 440  LQACVEACQFDRAFRLFRSW----------TLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            ++    +    +A +L              T+    V+ G          S    + ++ 
Sbjct: 1022 MKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGS---------SGQPQEAEKV 1072

Query: 490  ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN 547
            +TN              K      +T  Y+ ++ A     DY      + EM+  GL P+
Sbjct: 1073 LTNL-------------KEMGLSLSTLPYSSVIDAYLKNKDYSVGIQKLVEMKKEGLEPD 1119

Query: 548  HISWTILIDACGGSGNVEGAL 568
            H  WT  I A   S +   A+
Sbjct: 1120 HRIWTCFIRAASLSEHTHDAI 1140



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 106/259 (40%), Gaps = 33/259 (12%)

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           A    LA EI+     + A+  +   V  Y+ ++ V+A    +     + + M   G  P
Sbjct: 189 ANQEALAVEIF-----IRAESTVDNTVQVYNAMMGVYARTGRFNKVQGMLDLMRERGCEP 243

Query: 397 NTITWSSLINACANAGLVEQ--AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           + +++++LINA   AG +    A+ L  E+ ++G  P+    N L+ AC      + A +
Sbjct: 244 DLVSFNTLINARLKAGAMTPNVAIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVK 303

Query: 455 LFRS----------WTLSKTQVALGE-DYDGNTDRI-SNMEHKD--KQSITNTPNFVPNS 500
           +F            WT +      G   + G  +++   +E K     ++T        +
Sbjct: 304 VFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFA 363

Query: 501 HYSSFDK---------RFSFKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSPNHI 549
              + DK         +  F     TYN  I M      +     L  +M+  G +P+ I
Sbjct: 364 REGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAI 423

Query: 550 SWTILIDACGGSGN-VEGA 567
           ++T+LID+ G +   VE A
Sbjct: 424 TYTVLIDSLGKANKMVEAA 442



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 114/302 (37%), Gaps = 55/302 (18%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLG 319
           +I+  G    + K+ ++  +LR +   ++  V+N+L+   A     +    V+  M + G
Sbjct: 741 VIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGCYEQARAVFNTMMRDG 800

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
               + S N LL+A  + G     +E+Y   + ++  G  ++   +   I+  FA     
Sbjct: 801 PSPTVDSINGLLQALIVDGRL---EELYVVTQEIQDMG-FQISKSSILLILDAFARVSNI 856

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
             A K+ + M +AG  P    +  +I        V     +  EM +AG  P+    N +
Sbjct: 857 AEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPDLSIWNSM 916

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
           L+       F +  ++++                    RI                    
Sbjct: 917 LRLYTGIDDFRKTVQIYQ--------------------RI-------------------- 936

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK--ALMNEMRTVGLSPNHISWTILIDA 557
                  K    +P   TYN L+   C D+   +  +LM+EMR +GL P   ++  LI A
Sbjct: 937 -------KEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAA 989

Query: 558 CG 559
            G
Sbjct: 990 FG 991



 Score = 39.3 bits (90), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 31/177 (17%), Positives = 81/177 (45%), Gaps = 6/177 (3%)

Query: 254  PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
            P +   +++I   G     + +  ++E+L S+   L+   ++ +M +  N+ +     ++
Sbjct: 978  PKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKL 1037

Query: 312  YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
               M+  GV   +A+ ++L+ +   +G    A+++   +K +     L L    YS+++ 
Sbjct: 1038 LSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMG----LSLSTLPYSSVID 1093

Query: 372  VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
             +   K + + ++   +M   G+ P+   W+  I A + +     A+ L + +  +G
Sbjct: 1094 AYLKNKDYSVGIQKLVEMKKEGLEPDHRIWTCFIRAASLSEHTHDAILLLQALQDSG 1150


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 145/312 (46%), Gaps = 26/312 (8%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV 320
           + G C  G+ MK+  ++++LRS  +   I  +N+L++      +L+   ++   M   G+
Sbjct: 381 IYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI 440

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             D+ +Y IL+   C  G+  +AQE + E+ H   +G L+LD + Y+T  ++  + K   
Sbjct: 441 APDIVTYTILVNGSCKMGSLSMAQEFFDEMLH---EG-LELDSYAYAT--RIVGELKLGD 494

Query: 381 M--ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A  ++E+ML+ G  P+ I ++ +++     G +E+A  L ++M+  G  P+      
Sbjct: 495 TSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTS 554

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           ++ A +E  +  +   +F    LSK     G      T  +    H  K  +     F+ 
Sbjct: 555 IIHAHLENGRLRKGREIFYE-MLSK-----GLTPSVVTYTVLIHGHAGKGRLERA--FI- 605

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILID 556
             ++S   ++    P   TYN L+   C      +A     EM   G+ PN  S+TILI+
Sbjct: 606 --YFSEMQEK-GILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILIN 662

Query: 557 ACGGSGNVEGAL 568
                GN + AL
Sbjct: 663 ENCNMGNWQEAL 674



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 112/259 (43%), Gaps = 34/259 (13%)

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           ++ D+ SYN L+   C  GN + A  ++ E++ +     L   + TY+T++         
Sbjct: 370 LLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSI----YLFPTIVTYNTLLDGLCRQGEL 425

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           ++A ++K +M++ G+ P+ +T++ L+N     G +  A   F+EML  G E +S      
Sbjct: 426 EVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATR 485

Query: 440 LQACVEACQFDRAFRL--------FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +   ++     RAF L        F    +    V  G    GN +  S +  K   S  
Sbjct: 486 IVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQK-MVSDG 544

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHI 549
             P++V                   TY  ++ A   +    + + +  EM + GL+P+ +
Sbjct: 545 VIPDYV-------------------TYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVV 585

Query: 550 SWTILIDACGGSGNVEGAL 568
           ++T+LI    G G +E A 
Sbjct: 586 TYTVLIHGHAGKGRLERAF 604



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 107/221 (48%), Gaps = 13/221 (5%)

Query: 242 RAYDASKKHLSS---PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           RA+   ++ L+    P++ I   ++D  G+C  G+  ++  + + + S  V  +   + S
Sbjct: 497 RAFSLQEEMLAKGFPPDLIIYNVVVD--GLCKLGNLEEASELLQKMVSDGVIPDYVTYTS 554

Query: 297 LMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           +++ +  +  L+   E++  M   G+   + +Y +L+      G    A   + E   ++
Sbjct: 555 IIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSE---MQ 611

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            KG+L  +V TY++++      +    A     +M+  G+ PN  +++ LIN   N G  
Sbjct: 612 EKGILP-NVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNW 670

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           ++A+ L+++ML  G +P+S   + LL+   + C+     +L
Sbjct: 671 QEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVRQL 711



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD  ++ ++ E++ ++    ++ ++N +++      +L+   E+ + M   GV+ D  +Y
Sbjct: 493 GDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTY 552

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             ++ A    G     +EI+ E   + +KG L   V TY+ ++   A     + A     
Sbjct: 553 TSIIHAHLENGRLRKGREIFYE---MLSKG-LTPSVVTYTVLIHGHAGKGRLERAFIYFS 608

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M   G+ PN IT++SLIN       ++QA + F EM++ G  PN     IL+       
Sbjct: 609 EMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMG 668

Query: 448 QFDRAFRLFR 457
            +  A  L++
Sbjct: 669 NWQEALSLYK 678



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 109/267 (40%), Gaps = 22/267 (8%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L V+  M K  +  D+ + N +L+   L    ++++ +  EV     +  +K  + TY+T
Sbjct: 184 LSVFDKMIKSRLSPDVKNCNRILR--ILRDKDLMSKAV--EVYRTMGEFGIKPTIVTYNT 239

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  +      Q  L +  +M   G  PN +T++ LIN  +  G  EQA  L  EML+ G
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTL--SKTQVALGEDYDGNTDRISNMEHKD 486
            + ++   N L+           A  L     L  +   VA    +     ++  M    
Sbjct: 300 LKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAM 359

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGL 544
           +Q      N              +  P   +YN L+   C     +KA  L +E+R++ L
Sbjct: 360 QQLSDMLAN--------------NLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYL 405

Query: 545 SPNHISWTILIDACGGSGNVEGALQCR 571
            P  +++  L+D     G +E A Q +
Sbjct: 406 FPTIVTYNTLLDGLCRQGELEVAQQLK 432


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/441 (20%), Positives = 173/441 (39%), Gaps = 71/441 (16%)

Query: 147 LELFDGSGFKLLKNECQRLLD-----SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201
             L   S F++  + C  LLD     +  V ++    E+LE +  P K       I + C
Sbjct: 176 FRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILE-YGFPPKVQYYNILINKFC 234

Query: 202 VNKP--DVNL---AIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM 256
                 D  L    IR   + P   + F   +    K R+L    R     +++   P++
Sbjct: 235 KEGSIRDAKLIFNEIRKRGLRP-TTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDV 293

Query: 257 YICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVY 312
           +    +I   G+C  G    +  ++++++ + +  N   F +L++      +    +  Y
Sbjct: 294 FTYSVLIH--GLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTY 351

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M  +GV  D+  YN LL   C  G+   A+++  E++ +     +K D  TY+T++  
Sbjct: 352 HQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVG----MKPDKITYTTLIDG 407

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +      + A+++++ M   GV  + + +++LI+     G V  A     EM++AG +P+
Sbjct: 408 YCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPD 467

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
                +++    +       F+L +   +                               
Sbjct: 468 DATYTMVIDGYCKKGNVKMGFKLLKEMQI------------------------------- 496

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHIS 550
                 N H          KP   TYN+LM   C       A  L+  M  +G++P+ I+
Sbjct: 497 ------NGH----------KPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDIT 540

Query: 551 WTILIDACGGSGNVEGALQCR 571
           + IL++    +G  E  L+ R
Sbjct: 541 YNILLEGHCKNGKAEDLLKLR 561



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 124/273 (45%), Gaps = 19/273 (6%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           I F   +    + R + SA+  Y         P++ +  T+++  G+C  GD  K+R + 
Sbjct: 329 ITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLN--GLCKVGDVNKARKLV 386

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           +++R   +  +   + +L++      DL+  +E+ K M + GV+ D  ++  L+   C  
Sbjct: 387 DEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRD 446

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A+    E+  +EA   +K D  TY+ ++  +      +M  K+ ++M   G  P 
Sbjct: 447 GRVRDAERTLREM--VEAG--MKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPG 502

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            IT++ L+N     G ++ A  L E ML  G  P+    NILL+     C+  +A  L +
Sbjct: 503 VITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEG---HCKNGKAEDLLK 559

Query: 458 SWTLSKTQVALGEDYDGNTDRIS--NMEHKDKQ 488
                + +  L  DY   T  +S  N   KD+Q
Sbjct: 560 ----LRNEKGLIVDYAYYTSLVSEYNKSLKDRQ 588


>gi|22327132|ref|NP_680234.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174514|sp|Q9LKU8.1|PP401_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g28460
 gi|9502149|gb|AAF88002.1| contains similarity to Pfam family PF01535 (Domain of unknown
           function), score=340.5, E=1.9e-98, N=2 [Arabidopsis
           thaliana]
 gi|15529206|gb|AAK97697.1| AT5g28460/F21B23_120 [Arabidopsis thaliana]
 gi|27363272|gb|AAO11555.1| At5g28460/F21B23_120 [Arabidopsis thaliana]
 gi|332006418|gb|AED93801.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 766

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 115/258 (44%), Gaps = 42/258 (16%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +YN L+   C AG    A+E+   +K  E    +K +V T +TIV          MA+  
Sbjct: 408 TYNCLIDGYCRAGKLETAKEVVSRMKEDE----IKPNVVTVNTIVGGMCRHHGLNMAVVF 463

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             DM   GV  N +T+ +LI+AC +   VE+AM+ +E+ML+AGC P+++    L+    +
Sbjct: 464 FMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQ 523

Query: 446 ACQFDRAFRLFR-------SWTLSKTQVALGEDYDGNT-----DRISNMEHKDKQSITNT 493
             +   A R+         S  L    + +G   D N      + +++ME + K      
Sbjct: 524 VRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGK------ 577

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISW 551
                             KP + TYN L+       D+  V+ +M +MR  GL P   ++
Sbjct: 578 ------------------KPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTY 619

Query: 552 TILIDACGGSGNVEGALQ 569
             +IDA    G ++ AL+
Sbjct: 620 GAVIDAYCSVGELDEALK 637



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 131/357 (36%), Gaps = 74/357 (20%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN      +ID     G    ++ +   ++   +  N+   N+++      H L   +  
Sbjct: 404 PNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVF 463

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA---------------- 355
           + +M+K GV  ++ +Y  L+ ACC   N  + + +Y   K LEA                
Sbjct: 464 FMDMEKEGVKGNVVTYMTLIHACCSVSN--VEKAMYWYEKMLEAGCSPDAKIYYALISGL 521

Query: 356 -----------------KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
                            +G   LD+  Y+ ++ +F D    +   ++  DM   G  P++
Sbjct: 522 CQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDS 581

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           IT+++LI+        E    + E+M + G +P       ++ A     + D A +LF+ 
Sbjct: 582 ITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD 641

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN--SHYSSFDKRFSFK---- 512
             L                      H      T   N + N  S   +F +  S K    
Sbjct: 642 MGL----------------------HSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMK 679

Query: 513 -----PTTTTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDACGGS 561
                P   TYN L K C  +  + +    LM+EM      PN I+  IL++   GS
Sbjct: 680 MKMVRPNVETYNALFK-CLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGS 735



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 9/208 (4%)

Query: 253 SPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           SP+  I   +I  +C +  D+   R + E L+    +L++  +N L+ +  + ++ +   
Sbjct: 508 SPDAKIYYALISGLCQVRRDHDAIRVV-EKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVY 566

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+  +M+K G   D  +YN L+      G     + +   ++ +   G L   V TY  +
Sbjct: 567 EMLTDMEKEGKKPDSITYNTLI---SFFGKHKDFESVERMMEQMREDG-LDPTVTTYGAV 622

Query: 370 VKVFADAKWWQMALKVKEDM-LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +  +        ALK+ +DM L + V PNT+ ++ LINA +  G   QA+ L EEM    
Sbjct: 623 IDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKM 682

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
             PN +  N L +   E  Q +   +L 
Sbjct: 683 VRPNVETYNALFKCLNEKTQGETLLKLM 710


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 123/262 (46%), Gaps = 32/262 (12%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           ++K  V AD+  Y+ ++ + C       A  +Y E   + AKG+   +V+T+S +V    
Sbjct: 138 LRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSE---MIAKGIFP-NVYTFSILVDALC 193

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
             +  + A+ +   M+  GV PN +T+ ++++       V +A+++F  M+Q G EPN  
Sbjct: 194 KDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVW 253

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQ---VALGEDYDG--NTDRIS-NMEHKDK- 487
           C NI++    +  + D A  LF+     K     V      DG     +IS ++E  D+ 
Sbjct: 254 CYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEM 313

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
           +SI  T + +                   TYN L+ A C +++  +A  L+ E++  G+ 
Sbjct: 314 RSIGKTVDII-------------------TYNSLLHALCKNHHLDQAITLVKEIKDQGIQ 354

Query: 546 PNHISWTILIDACGGSGNVEGA 567
           PN  ++T LID     G +E A
Sbjct: 355 PNVCTYTTLIDGLCKDGRLEDA 376



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 99/235 (42%), Gaps = 6/235 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   V    K R    A+       K    PN+     I+D   +     K+  I+  + 
Sbjct: 185 FSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMV 244

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            + V  N++ +N ++N       +   + ++K M    +  D+ +YNIL+   C  G   
Sbjct: 245 QEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKIS 304

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            + E+  E++ +       +D+ TY++++           A+ + +++   G+ PN  T+
Sbjct: 305 TSLELVDEMRSIGKT----VDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTY 360

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           ++LI+     G +E A  +F+E+L  G        N+++    +   FD A  L 
Sbjct: 361 TTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALL 415



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 104/221 (47%), Gaps = 10/221 (4%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSL 297
           AL  ++   +    PN++ C  II + G+C       A  +++++  + +  ++  +N L
Sbjct: 236 ALNIFNVMVQEGVEPNVW-CYNII-INGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNIL 293

Query: 298 MN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++       +  +LE+   M+ +G   D+ +YN LL A C   N  L Q I   VK ++ 
Sbjct: 294 IDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALC--KNHHLDQAI-TLVKEIKD 350

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +G+ + +V TY+T++         + A  + +++L+ G      T++ +IN     GL +
Sbjct: 351 QGI-QPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFD 409

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +A+ L   M    C P++     ++ A  E  +  +  +L 
Sbjct: 410 EALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLL 450



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 18/204 (8%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           KK+ +  A+  +        +P++     +ID  G+C  G    S  + +++RS   T++
Sbjct: 264 KKKRVDEAMNLFKEMHWKKINPDVVTYNILID--GLCKLGKISTSLELVDEMRSIGKTVD 321

Query: 291 IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT----VLAQ 344
           I  +NSL++     H L   + + K ++  G+  ++ +Y  L+   C  G      V+ Q
Sbjct: 322 IITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQ 381

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           EI  E  H+         V+TY+ ++        +  AL +   M      P+ +++ ++
Sbjct: 382 EILTEGYHIT--------VWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETI 433

Query: 405 INACANAGLVEQAMHLFEEMLQAG 428
           I A +  G   +   L   M+  G
Sbjct: 434 IYALSEKGETVKTNKLLCAMIVRG 457


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 132/310 (42%), Gaps = 46/310 (14%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKA 333
            + E++ S  +  NIY +   + V   D K   E Y+ M+++   G   D+ +Y +L+ A
Sbjct: 250 GLLEEMESMGLRPNIYTYTICIRVLGRDGKID-EAYRIMKRMDDDGCGPDVVTYTVLIDA 308

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C A     A  ++ ++K    K     D  TY T++  F+D        K+  +M + G
Sbjct: 309 LCTARKLDDAMCLFTKMKSSSHKP----DKVTYVTLLDKFSDCGHLDKVEKIWTEMEADG 364

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             P+ +T++ L+NA   AG + +A  L + M + G  PN    N L+   + A + D A 
Sbjct: 365 YAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDAL 424

Query: 454 RLF---RSWTLSKTQVA--LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
            LF    S  +  T     L  DY G +                     P     +F+K 
Sbjct: 425 DLFSNMESLGVEPTAYTYILLIDYHGKSGH-------------------PGKALETFEK- 464

Query: 509 FSFKPTTTTYNILMKACCTDYYRV---------KALMNEMRTVGLSPNHISWTILIDACG 559
              K      NI+  AC    Y +         KA+ NE+++ GL+P+ +++ +++    
Sbjct: 465 --MKARGIAPNIV--ACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYS 520

Query: 560 GSGNVEGALQ 569
             G V+ A++
Sbjct: 521 KVGQVDEAIK 530



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 123/265 (46%), Gaps = 30/265 (11%)

Query: 330  LLKACCLAGNTVLAQEIYGE-VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            ++K  C    T +A+ ++ +  K L  K  LK+    Y+ ++  F +    ++A  + E+
Sbjct: 760  IIKVLCKHKKTSVARNVFVKFTKELGVKPTLKV----YNLLIDGFLEVHNVEVAWNLFEE 815

Query: 389  MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
            M SAG  P+T T++SLI+A   +G + +   L++EML  GC+PN+   N+++   V++ +
Sbjct: 816  MKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNR 875

Query: 449  FDRAFRLFR---SWTLSKTQVALGEDYDG--NTDRISN-------MEHKDKQSITNTPNF 496
             D+A  L+    S   S T    G   DG   + R+ +       M H   +  +   N 
Sbjct: 876  LDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNI 935

Query: 497  VPNSHYS--------SFDKRF---SFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVG 543
            + N +           F KR      +P   +Y IL+   C       AL    +++  G
Sbjct: 936  LVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAG 995

Query: 544  LSPNHISWTILIDACGGSGNVEGAL 568
            L P+ +++ ++I+  G S   E AL
Sbjct: 996  LDPDLVAYNLMINGLGRSQRTEEAL 1020



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 115/279 (41%), Gaps = 20/279 (7%)

Query: 293  VFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            V+N L++  +  H+++    +++ M+  G   D  +YN L+ A   +G      E++   
Sbjct: 792  VYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKI---NELFDLY 848

Query: 351  KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
              +  +G  K +  TY+ ++     +     A+ +  +++S   +P   T+  LI+    
Sbjct: 849  DEMLTRGC-KPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLK 907

Query: 411  AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            +G ++ A  +F+ M+  GC PNS   NIL+    +    D A   F+       +  L +
Sbjct: 908  SGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDL-K 966

Query: 471  DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
             Y    D +      D              HY    K+    P    YN+++        
Sbjct: 967  SYTILVDILCIAGRVDDA-----------LHYFEKLKQAGLDPDLVAYNLMINGLGRSQR 1015

Query: 531  RVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              +A  L +EM+  G+ P+  ++  LI   G  G +E A
Sbjct: 1016 TEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEA 1054



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 76/148 (51%), Gaps = 4/148 (2%)

Query: 310  EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            E +K M K G+  D+ SY IL+   C+AG    A   + ++K    +  L  D+  Y+ +
Sbjct: 951  EFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLK----QAGLDPDLVAYNLM 1006

Query: 370  VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
            +     ++  + AL +  +M + G+ P+  T++SLI      G++E+A  ++EE+   G 
Sbjct: 1007 INGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGL 1066

Query: 430  EPNSQCCNILLQACVEACQFDRAFRLFR 457
            +PN    N L++    +   + A+ +++
Sbjct: 1067 KPNVFTYNALIRGYTLSGNSELAYGIYK 1094



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 14/213 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEV 311
           P  Y    +ID  G  G   K+   +E ++++ +  NI   N+ +   A    L     +
Sbjct: 437 PTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAM 496

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  ++  G+  D  +YN+++K     G    A ++  E+  ++ +     DV   ++++ 
Sbjct: 497 FNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEP----DVIVINSLID 552

Query: 372 VFADA----KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
               A    + WQM  +++E      + P  +T++ L+      G +++A+ LFE M   
Sbjct: 553 TLYKAGRVEEAWQMFCRMEE----MNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGH 608

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           GC PN+   N LL    +  + D A ++F   T
Sbjct: 609 GCSPNTITFNTLLDCLCKNDEVDLALKMFYKMT 641



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 94/438 (21%), Positives = 183/438 (41%), Gaps = 83/438 (18%)

Query: 74  YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV 133
           Y  +   L + G  +E A+ V   +VSEG      +  +L MVASG  ++I+      V+
Sbjct: 197 YNGLIHFLLQSGFCKE-ALEVYRRMVSEGLKPSLKTFSAL-MVASGKRRNIK-----TVM 249

Query: 134 GVLKKLNELGVAP--------LELFDGSG-----FKLLKNECQRLLDSG---EVEMFVGL 177
           G+L+++  +G+ P        + +    G     ++++K    R+ D G   +V  +  L
Sbjct: 250 GLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMK----RMDDDGCGPDVVTYTVL 305

Query: 178 MEVLEEFRLPVKELDEE---FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234
           ++ L       ++LD+    F  ++   +KPD               + +   + +F   
Sbjct: 306 IDAL----CTARKLDDAMCLFTKMKSSSHKPD--------------KVTYVTLLDKFSDC 347

Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
             L    + +   +    +P++     +++     G   ++  + + +R Q V  N++ +
Sbjct: 348 GHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTY 407

Query: 295 NSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY----- 347
           N+L++  + A+ L   L+++ NM+ LGV     +Y +L+     +G+   A E +     
Sbjct: 408 NTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKA 467

Query: 348 -----------------------GEVK----HLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
                                  GE K     L++ G L  D  TY+ ++K ++      
Sbjct: 468 RGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSG-LAPDSVTYNMMMKCYSKVGQVD 526

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A+K+  +M      P+ I  +SLI+    AG VE+A  +F  M +    P     NILL
Sbjct: 527 EAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILL 586

Query: 441 QACVEACQFDRAFRLFRS 458
               +  Q  +A +LF S
Sbjct: 587 AGLGKEGQIQKAVQLFES 604



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 6/228 (2%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           GK      AL  ++  K    +PN+  C   +      G   +++A++ +L+S  +  + 
Sbjct: 450 GKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDS 509

Query: 292 YVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             +N +M   +    +   +++   M K+    D+   N L+     AG    A +++  
Sbjct: 510 VTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCR 569

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           ++ +     L   V TY+ ++         Q A+++ E M   G +PNTIT+++L++   
Sbjct: 570 MEEMN----LAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLC 625

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
               V+ A+ +F +M    C P+    N ++   ++  Q   A  LF 
Sbjct: 626 KNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFH 673



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 24/263 (9%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+  MQ+  +  ++ +Y I+ K+  + G   L Q      K  EA  VL  + ++Y+ ++
Sbjct: 146 VFDLMQRQIIRRNVDTYLIIFKSLFIRGG--LRQAPSALEKMREAGFVL--NAYSYNGLI 201

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                + + + AL+V   M+S G+ P+  T+S+L+ A      ++  M L EEM   G  
Sbjct: 202 HFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLR 261

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNMEHKDK 487
           PN     I ++      + D A+R+ +           G D   Y    D +      D 
Sbjct: 262 PNIYTYTICIRVLGRDGKIDEAYRIMKRM----DDDGCGPDVVTYTVLIDALCTARKLDD 317

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLS 545
                T             K  S KP   TY  L+   + C    +V+ +  EM   G +
Sbjct: 318 AMCLFTKM-----------KSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYA 366

Query: 546 PNHISWTILIDACGGSGNVEGAL 568
           P+ +++TIL++A   +G +  A 
Sbjct: 367 PDVVTFTILVNALCKAGRINEAF 389



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 97/210 (46%), Gaps = 20/210 (9%)

Query: 233  KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY---------MKSRAIYEDLR 283
            K   L  A   +D    +   PN  I   +++  G  G           M    I  DL+
Sbjct: 907  KSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLK 966

Query: 284  SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            S  + ++I          A  +   L  ++ +++ G+  D+ +YN+++     +  T  A
Sbjct: 967  SYTILVDILCI-------AGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEA 1019

Query: 344  QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
              ++ E+++   +G++  D++TY++++         + A K+ E++   G+ PN  T+++
Sbjct: 1020 LSLFHEMQN---RGIVP-DLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNA 1075

Query: 404  LINACANAGLVEQAMHLFEEMLQAGCEPNS 433
            LI     +G  E A  ++++M+  GC+PN+
Sbjct: 1076 LIRGYTLSGNSELAYGIYKKMMVGGCDPNT 1105



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 94/198 (47%), Gaps = 8/198 (4%)

Query: 211  IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
            + Y C  P + I +   V  +GK   + +A   +    K    P++     ++D+  I G
Sbjct: 922  VHYGC-RPNSAI-YNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAG 979

Query: 271  DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN 328
                +   +E L+   +  ++  +N ++N    +   +  L ++  MQ  G++ D+ +YN
Sbjct: 980  RVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYN 1039

Query: 329  ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
             L+    + G    A +IY E++ +     LK +VFTY+ +++ +  +   ++A  + + 
Sbjct: 1040 SLILNLGIVGMIEEAGKIYEELQFIG----LKPNVFTYNALIRGYTLSGNSELAYGIYKK 1095

Query: 389  MLSAGVTPNTITWSSLIN 406
            M+  G  PNT T++ L N
Sbjct: 1096 MMVGGCDPNTGTFAQLPN 1113



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/220 (18%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 240  ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
            A   ++  K    +P+ +   ++ID  G  G   +   +Y+++ ++    N   +N +++
Sbjct: 809  AWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVIS 868

Query: 300  --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
              V ++ L   +++Y N+          ++  L+     +G    A E++  + H   + 
Sbjct: 869  NLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRP 928

Query: 358  VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
                +   Y+ +V  +        A +  + M+  G+ P+  +++ L++    AG V+ A
Sbjct: 929  ----NSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDA 984

Query: 418  MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +H FE++ QAG +P+    N+++     + + + A  LF 
Sbjct: 985  LHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFH 1024


>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
 gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
          Length = 546

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 127/271 (46%), Gaps = 37/271 (13%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   +  +G+   L  A+      +     P++ I  T+I++ G   DY K+ +++  L+
Sbjct: 63  FSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLK 122

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTLE---VYKNMQKLGVMADMASYNILLKACCLAGNT 340
           +  +  +  ++NS++N+     KF  E   +   M++ G+M D  SY IL+ A   +   
Sbjct: 123 ASGIAPDKVIYNSMINLYGK-AKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKY 181

Query: 341 VLAQEIYGEVK-------------HLEAKGVLKL-------------------DVFTYST 368
           + A++++ E+K              ++  G L++                   +V TY+T
Sbjct: 182 LEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNT 241

Query: 369 IVKVFADAKWWQMALKVKEDMLS-AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           ++KV+ +A+    A  V   M +  GV PN IT+++++         E+AM L  +M Q 
Sbjct: 242 MIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQR 301

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           G EPN+   + L+    +  ++DRA  LF++
Sbjct: 302 GIEPNAVTYSTLISIYGKTGKYDRAAFLFKT 332



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/255 (20%), Positives = 109/255 (42%), Gaps = 44/255 (17%)

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
           G ++ +EA G+ K D+  +ST++++    K +  A  +   + ++G+ P+ + ++S+IN 
Sbjct: 81  GWLQEMEAGGI-KPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINL 139

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS--------- 458
              A   ++A  L  EM +AG  P++    IL+ A  E+ ++  A ++F           
Sbjct: 140 YGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLD 199

Query: 459 ------------------------WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
                                   W++SKT   LG   +  T       +K+ + ++   
Sbjct: 200 VTTCNMMIDVYGKLEMVRDAEELFWSMSKT---LGIQQNVVTYNTMIKVYKEAELLSEAF 256

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSPNHISWT 552
           N      +     +   +P   TYN  + +      + +   L+ +M+  G+ PN ++++
Sbjct: 257 NV-----FYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYS 311

Query: 553 ILIDACGGSGNVEGA 567
            LI   G +G  + A
Sbjct: 312 TLISIYGKTGKYDRA 326



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 104/202 (51%), Gaps = 12/202 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEV 311
           P+      +I+       Y++++ ++ +++++ + L++   N +++V      ++   E+
Sbjct: 163 PDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEEL 222

Query: 312 YKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + +M K LG+  ++ +YN ++K    A    L  E +    +++ KG ++ +V TY+TI+
Sbjct: 223 FWSMSKTLGIQQNVVTYNTMIKVYKEAE---LLSEAFNVFYYMQNKGGVEPNVITYNTIL 279

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            +       + A+++   M   G+ PN +T+S+LI+     G  ++A  LF+ + + G E
Sbjct: 280 FLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFE 339

Query: 431 PNSQCCNILLQACVEACQFDRA 452
            +     IL Q+ +    ++RA
Sbjct: 340 MD----EILYQSMI--VVYERA 355



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 24/235 (10%)

Query: 228 VREFGKKRDLVS---ALRAYDASKKHLSSPNMYI-------------CRTIIDVCGICGD 271
           ++E G   D VS    + AY  S+K+L +  +++             C  +IDV G    
Sbjct: 156 MKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEM 215

Query: 272 YMKSRAIYEDL-RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ-KLGVMADMASY 327
              +  ++  + ++  +  N+  +N+++ V   A  L     V+  MQ K GV  ++ +Y
Sbjct: 216 VRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITY 275

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N +L    L G T+  ++    V+ ++ +G+ + +  TYST++ ++     +  A  + +
Sbjct: 276 NTIL---FLHGLTLQHEKAMRLVRKMQQRGI-EPNAVTYSTLISIYGKTGKYDRAAFLFK 331

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            +   G   + I + S+I     AGLV  A  L EE+ Q    P     +IL +A
Sbjct: 332 TLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRDTAISILAKA 386



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 93/206 (45%), Gaps = 10/206 (4%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE-- 310
            PN+    TI+ + G+   + K+  +   ++ + +  N   +++L+++     K+     
Sbjct: 269 EPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAF 328

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++K +++ G   D   Y  ++     AG    A+ +  E+K        + D+    T +
Sbjct: 329 LFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELK--------QPDIVPRDTAI 380

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            + A A+  + A K+      AG    ++T+ S+I         + A+ +FE M ++G  
Sbjct: 381 SILAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFMRNKRSKNAIDVFENMRESGFL 440

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
           P+S+   +LL A  +  Q + A +L+
Sbjct: 441 PDSETTVVLLAAYGQLRQLEDAEKLY 466


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 143/330 (43%), Gaps = 39/330 (11%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN+ I  T+ID C   GD M ++ ++  +    +  N + ++ LMN        +   +
Sbjct: 190 SPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQ 249

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +Y+NM + G++ +  +YN L+   C  G    A +++ E++    KG+    V TY+ ++
Sbjct: 250 MYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMRE---KGI-ACGVMTYNILI 305

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 K +  A+K+   +   G++PN +T++ LIN   + G ++ A+ LF ++  +G  
Sbjct: 306 GGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLS 365

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDK 487
           P     N L+    +      A  L +      +++++V     Y    D  + + + DK
Sbjct: 366 PTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVT----YTILIDAFARLNYTDK 421

Query: 488 ----QSITNTPNFVP--------------NSHYSSFDKRFS------FKPTTTTYNILMK 523
                S+      VP              N +     K F        +P +  YN ++ 
Sbjct: 422 ACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIH 481

Query: 524 ACCTD--YYRVKALMNEMRTVGLSPNHISW 551
             C +   YR   L+NEM   G+ PN  S+
Sbjct: 482 GYCKEGSSYRALRLLNEMVHSGMVPNVASF 511



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 124/301 (41%), Gaps = 60/301 (19%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK---NMQKLGVMADMASYNIL 330
           K+  I+  L+S+ V LN Y F  +M     +  + + V++    +++ G+  ++  Y  L
Sbjct: 142 KAWWIFNVLKSK-VVLNAYSF-GIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTL 199

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +  CC  G+ +LA+ ++ ++  L     L  +  TYS ++  F      +   ++ E+M 
Sbjct: 200 IDGCCKNGDVMLAKNLFCKMDRLG----LVPNQHTYSVLMNGFFKQGLQREGFQMYENMN 255

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
            +G+ PN   ++ LI+   N G+V++A  +F EM + G        NIL+       +F 
Sbjct: 256 RSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFG 315

Query: 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
            A +L                            HK                      +  
Sbjct: 316 EAVKLV---------------------------HK--------------------VNKVG 328

Query: 511 FKPTTTTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             P   TYNIL+   C D  ++     L N++++ GLSP  +++  LI       N+ GA
Sbjct: 329 LSPNIVTYNILINGFC-DVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGA 387

Query: 568 L 568
           L
Sbjct: 388 L 388



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY---GEVKHLEAKGVLKLDVFTY 366
           E++  M+K G++ D+ +Y++L+   C+ GN   A + +   GE+ HL+   V+      Y
Sbjct: 424 EMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEM-HLQPNSVI------Y 476

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++  +        AL++  +M+ +G+ PN  ++ S +         ++A  L  +M+ 
Sbjct: 477 NTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMIN 536

Query: 427 AGCEPN 432
           +G +P+
Sbjct: 537 SGLKPS 542


>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 151/336 (44%), Gaps = 24/336 (7%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           A+  +D  KK    P+++    ++D  G+C  GD +    +  ++    +T N+  ++SL
Sbjct: 302 AVEVFDGMKKCGFVPDVHSYSILVD--GLCKQGDVLTGYYMLVEMARNGITPNLVSYSSL 359

Query: 298 MN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++    A  ++   E++K ++  G   D   Y+I+L  CC   +  +  +++ ++ H   
Sbjct: 360 LHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHN- 418

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
                 D + YS+++  +   +  + AL+V E M+  G+ PN +T + L++  +N GL+ 
Sbjct: 419 ---FVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIG 475

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
           +A    +++ Q G  PN     +++      C+ ++   +   W +    +  G  Y  +
Sbjct: 476 EAFLFLDKVRQFGVVPNLCTYRVIING---LCKVNKPNDV---WGIFADMIKRG--YVPD 527

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVK 533
           T   S +     +++     F    +Y   D+    KP   TY  L+   C D     V 
Sbjct: 528 TVLYSIIIDGFVKALDLQEAF--RLYYKMVDE--GTKPNIFTYTSLINGLCHDDKLPEVM 583

Query: 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            L   M   GL+P+ I +T LI       N++ AL+
Sbjct: 584 TLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALE 619



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 6/188 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P+  +   IID      D  ++  +Y  +  +    NI+ + SL+N   HD K    + +
Sbjct: 526 PDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTL 585

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +K+M   G+  D   Y  L+   C   N   A EI+ E   +E +G L  D F Y+ ++ 
Sbjct: 586 FKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFRE---METEG-LSADSFVYTCLIG 641

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F+       A    E+M++ G+TP  +T++ LI      G  ++AM ++  MLQAG  P
Sbjct: 642 GFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGDEKKAMVMYNSMLQAGIAP 701

Query: 432 NSQCCNIL 439
           +++   IL
Sbjct: 702 DAKLSCIL 709



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 125/305 (40%), Gaps = 28/305 (9%)

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE----VYKNMQKLGVMADMASYN 328
           M  R++++D++    + NIY ++ LM++  H  K  LE    +   M+  GV  + A+Y 
Sbjct: 193 MYVRSLFDDMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEMEVEGVRPNAATYG 252

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
             L   C A      +  +  ++ L  +G    + + ++ ++  F        A++V + 
Sbjct: 253 TYLYGLCRAKQV---KSAWNFLQMLCQRGY-PCNSYCFNAVIHGFCHDGQVHKAVEVFDG 308

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M   G  P+  ++S L++     G V    ++  EM + G  PN    + LL     A +
Sbjct: 309 MKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGR 368

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRI---SNMEHKDKQSITNTPNFVPNSHYSSF 505
            + AF LF+     K Q   G  +D     I      +H D +   +  N + +      
Sbjct: 369 VELAFELFKRL---KDQ---GFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHH----- 417

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGN 563
               +F P    Y+ L+ A C      +AL     M   G+ PN ++ TIL+      G 
Sbjct: 418 ----NFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGL 473

Query: 564 VEGAL 568
           +  A 
Sbjct: 474 IGEAF 478



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 4/143 (2%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           +++ GV+ ++ +Y +++   C         +++G    +  +G +  D   YS I+  F 
Sbjct: 484 VRQFGVVPNLCTYRVIINGLCKVNK---PNDVWGIFADMIKRGYVP-DTVLYSIIIDGFV 539

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            A   Q A ++   M+  G  PN  T++SLIN   +   + + M LF+ M+  G  P+  
Sbjct: 540 KALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRI 599

Query: 435 CCNILLQACVEACQFDRAFRLFR 457
               L+    +      A  +FR
Sbjct: 600 LYTSLIACYCKRSNMKAALEIFR 622


>gi|145341746|ref|XP_001415964.1| pentatrichopeptide repeat (PPR) protein [Ostreococcus lucimarinus
           CCE9901]
 gi|144576187|gb|ABO94256.1| pentatrichopeptide repeat (PPR) protein [Ostreococcus lucimarinus
           CCE9901]
          Length = 632

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 14/228 (6%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A+R +D   +   +P      T +D     G   ++  ++  ++S  +      +N+L++
Sbjct: 224 AVRTFDELIEEGITPARQTYETALDSMARSGLLAQALEVFVQMKSNGLMPRKVTYNTLLS 283

Query: 300 --VNAHD--LKFTLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
             VNA    ++   E+++ MQ  G V  D ++Y++L+ A C AG   +A + +    H+ 
Sbjct: 284 ACVNAPQPRVEAAFEIFEEMQTKGNVTPDRSTYSLLIDAACKAGKPEMAFDAF---SHMR 340

Query: 355 AKGVLKLDVFTYSTIVKVFA-----DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
             G+ ++ V T + ++         D+   Q  L++ + M   GV P+ IT+ SLI  CA
Sbjct: 341 DSGI-EIQVGTLNRLIHAAGLNAKEDSTSVQATLELYDAMKKLGVEPDVITYGSLIATCA 399

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            A     A+ ++EEM  AG EPN    N+L+ A   A + + A   FR
Sbjct: 400 KARDAATAIKVYEEMRAAGVEPNRILFNVLINALGRANRSEEAMEYFR 447



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 113/254 (44%), Gaps = 24/254 (9%)

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
           A+Y+ L+ A   A    LA   + E   L  +G+      TY T +   A +     AL+
Sbjct: 206 AAYHTLIVAAHRANQHDLAVRTFDE---LIEEGITPARQ-TYETALDSMARSGLLAQALE 261

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGL--VEQAMHLFEEMLQAG-CEPNSQCCNILLQ 441
           V   M S G+ P  +T+++L++AC NA    VE A  +FEEM   G   P+    ++L+ 
Sbjct: 262 VFVQMKSNGLMPRKVTYNTLLSACVNAPQPRVEAAFEIFEEMQTKGNVTPDRSTYSLLID 321

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME----HKDKQSITNTPNFV 497
           A  +A + + AF  F     S  ++ +G       +R+ +       +D  S+  T    
Sbjct: 322 AACKAGKPEMAFDAFSHMRDSGIEIQVG-----TLNRLIHAAGLNAKEDSTSVQATLEL- 375

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILI 555
               Y +  K+   +P   TY  L+  C    D      +  EMR  G+ PN I + +LI
Sbjct: 376 ----YDAM-KKLGVEPDVITYGSLIATCAKARDAATAIKVYEEMRAAGVEPNRILFNVLI 430

Query: 556 DACGGSGNVEGALQ 569
           +A G +   E A++
Sbjct: 431 NALGRANRSEEAME 444


>gi|399216092|emb|CCF72780.1| unnamed protein product [Babesia microti strain RI]
          Length = 1520

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/349 (21%), Positives = 137/349 (39%), Gaps = 88/349 (25%)

Query: 258  ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY--VFNSLMNVNAHDLKFTLEVYKNM 315
            IC+ + + C  C + ++   +  DL   +++ + Y  + ++ + +N+ D    LE     
Sbjct: 878  ICQVLNNTC--CINQLQQLLMMTDLLQYHMSNDFYSAILDACIRINSPD--HLLESVNKY 933

Query: 316  QKLGVMADMASYNILLKACCLAGNTVLAQEIYGE-------------------------- 349
            +K G   D+ +Y +L+K    + N +    ++ E                          
Sbjct: 934  KKFGFHPDLQTYGLLIKFFSSSDNVMECFHLWNEMTSLYGYELNEVTYGCMFDALVSNNM 993

Query: 350  -------VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
                   +K ++    +K +   YST++K F   K    AL +   ML  GV PNTIT++
Sbjct: 994  LDEALSLLKDMKKNSNIKPNTIIYSTLIKGFGQTKQLNKALNIYLTMLDEGVVPNTITYN 1053

Query: 403  SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
            S+I+ACA  G + +A +L E+ML    EP+    + +++        DR+ +L R+ +  
Sbjct: 1054 SIIDACARVGDMNKAANLLEDMLNNNIEPDLITFSTVIKGYCVQSNMDRSLQLLRAMS-- 1111

Query: 463  KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
                                                             KP    YN L+
Sbjct: 1112 ---------------------------------------------ERGIKPDGILYNSLL 1126

Query: 523  KACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              C      +  + L +EM+  G++P++ + TILI   G  G ++ A Q
Sbjct: 1127 DGCVKSGRPWLCQQLWDEMQENGIAPSNFTLTILIKMYGRLGQLDKAFQ 1175



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 108/228 (47%), Gaps = 7/228 (3%)

Query: 222  ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
            I++   ++ FG+ + L  AL  Y         PN     +IID C   GD  K+  + ED
Sbjct: 1015 IIYSTLIKGFGQTKQLNKALNIYLTMLDEGVVPNTITYNSIIDACARVGDMNKAANLLED 1074

Query: 282  LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
            + + N+  ++  F++++       ++  +L++ + M + G+  D   YN LL  C  +G 
Sbjct: 1075 MLNNNIEPDLITFSTVIKGYCVQSNMDRSLQLLRAMSERGIKPDGILYNSLLDGCVKSGR 1134

Query: 340  TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNT 398
              L Q+++ E   ++  G+   + FT + ++K++        A ++ +++     +  NT
Sbjct: 1135 PWLCQQLWDE---MQENGIAPSN-FTLTILIKMYGRLGQLDKAFQLMDELPRKYNIQTNT 1190

Query: 399  ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
              ++ L++AC   G  + A+ +F  M   G  P+S+    ++   ++ 
Sbjct: 1191 HVYTCLMSACITNGKYKMALDVFNCMNGNGIVPDSKTYETIIFGAIKG 1238



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 6/175 (3%)

Query: 283  RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            ++ N+  N  ++++L+        L   L +Y  M   GV+ +  +YN ++ AC   G+ 
Sbjct: 1006 KNSNIKPNTIIYSTLIKGFGQTKQLNKALNIYLTMLDEGVVPNTITYNSIIDACARVGDM 1065

Query: 341  VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
              A  +  ++        ++ D+ T+ST++K +        +L++   M   G+ P+ I 
Sbjct: 1066 NKAANLLEDM----LNNNIEPDLITFSTVIKGYCVQSNMDRSLQLLRAMSERGIKPDGIL 1121

Query: 401  WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            ++SL++ C  +G       L++EM + G  P++    IL++      Q D+AF+L
Sbjct: 1122 YNSLLDGCVKSGRPWLCQQLWDEMQENGIAPSNFTLTILIKMYGRLGQLDKAFQL 1176


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 40/397 (10%)

Query: 194 EFRIVQLCVNKPDVNLAIRYACIVPRAD------------------ILFCNFVREFGKKR 235
           EF  V +C N    N+ I + C + R                    I +   V  + +  
Sbjct: 236 EFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFG 295

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
           +L    +  +  K+    PN YI  +II + C IC       A  E +R Q +  +  V+
Sbjct: 296 ELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR-QGILPDTVVY 354

Query: 295 NSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
            +L++      D++   + +  M    +  D+ +Y  ++   C  G+ V A +++ E   
Sbjct: 355 TTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE--- 411

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +  KG L+ D  T++ ++  +  A   + A +V   M+ AG +PN +T+++LI+     G
Sbjct: 412 MFCKG-LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEG 470

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            ++ A  L  EM + G +PN    N ++    ++   + A +L          V   E  
Sbjct: 471 DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL----------VGEFEAA 520

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YY 530
             N D ++     D    +   +           K    +PT  T+N+LM   C      
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK--GLQPTIVTFNVLMNGFCLHGMLE 578

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             + L+N M   G++PN  ++  L+       N++ A
Sbjct: 579 DGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 615



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 160/366 (43%), Gaps = 26/366 (7%)

Query: 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN 255
           RI +L   +   +  IR   I+P   +++   +  F K+ D+ +A + +        +P+
Sbjct: 328 RICKLAEAEEAFSEMIRQG-ILPDT-VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPD 385

Query: 256 MYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           +     II   G C  GD +++  ++ ++  + +  +   F  L+N    A  +K    V
Sbjct: 386 VLTYTAIIS--GFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 443

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           + +M + G   ++ +Y  L+   C  G+   A E+  E+  +     L+ ++FTY++IV 
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG----LQPNIFTYNSIVN 499

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               +   + A+K+  +  +AG+  +T+T+++L++A   +G +++A  + +EML  G +P
Sbjct: 500 GLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQP 559

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
                N+L+         +   +L  +W L+K          G     +      KQ   
Sbjct: 560 TIVTFNVLMNGFCLHGMLEDGEKLL-NWMLAK----------GIAPNATTFNSLVKQYCI 608

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHI 549
                   + Y     R    P   TY  L+K  C      +A  L  EM+  G S +  
Sbjct: 609 RNNLKAATAIYKDMCSR-GVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVS 667

Query: 550 SWTILI 555
           ++++LI
Sbjct: 668 TYSVLI 673



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 141/326 (43%), Gaps = 36/326 (11%)

Query: 274 KSRAIYEDLRSQNVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           ++R ++E + +  + L++    V+ + ++ + +     + V++   ++GV  ++ASYNI+
Sbjct: 193 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 252

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +   C  G     +E +  +  +E KG    DV +YST+V  +          K+ E M 
Sbjct: 253 IHFVCQLGRI---KEAHHLLLLMELKGYTP-DVISYSTVVNGYCRFGELDKVWKLIEVMK 308

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
             G+ PN+  + S+I        + +A   F EM++ G  P++     L+    +     
Sbjct: 309 RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIR 368

Query: 451 RAFRLF-----RSWT---LSKTQVALGEDYDGNTDRISNMEHK------DKQSITNTPNF 496
            A + F     R  T   L+ T +  G    G+      + H+      +  S+T T   
Sbjct: 369 AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE-- 426

Query: 497 VPNSHYSSFDKRFSFK-----------PTTTTYNILMKACCT--DYYRVKALMNEMRTVG 543
           + N +  +   + +F+           P   TY  L+   C   D      L++EM  +G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486

Query: 544 LSPNHISWTILIDACGGSGNVEGALQ 569
           L PN  ++  +++    SGN+E A++
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVK 512



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 120/271 (44%), Gaps = 39/271 (14%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + F   +  + K   +  A R ++   +   SPN+    T+ID  G+C  GD   +  + 
Sbjct: 422 VTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLID--GLCKEGDLDSANELL 479

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
            ++    +  NI+ +NS++N    + +++  +++    +  G+ AD  +Y  L+ A C +
Sbjct: 480 HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 539

Query: 338 GNTVLAQEIYGEV--KHLE------------------------------AKGVLKLDVFT 365
           G    AQEI  E+  K L+                              AKG+   +  T
Sbjct: 540 GEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP-NATT 598

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           ++++VK +      + A  + +DM S GV P+  T+ +L+     A  +++A  LF+EM 
Sbjct: 599 FNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMK 658

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             G   +    ++L++  ++  +F  A  +F
Sbjct: 659 GKGFSVSVSTYSVLIKGFLKRKKFLEAREVF 689



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEVYKN-MQKL 318
           T++D     G+  K++ I +++  + +   I  FN LMN    H +    E   N M   
Sbjct: 531 TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK 590

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  +  ++N L+K  C+  N   A  IY   K + ++GV   D  TY  +VK    A+ 
Sbjct: 591 GIAPNATTFNSLVKQYCIRNNLKAATAIY---KDMCSRGV-GPDGKTYENLVKGHCKARN 646

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            + A  + ++M   G + +  T+S LI          +A  +F++M + G   + +
Sbjct: 647 MKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKE 702


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 140/324 (43%), Gaps = 56/324 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNAHDLKF-TLE 310
           +PN Y   T+I      G   ++  +++++ ++  V     ++N+L+       K  T  
Sbjct: 547 APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL 606

Query: 311 VYKN-MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +Y++ M + GV   +A+YN+L+ A  + G      E Y  V+ +  KG L  DVFTY+ +
Sbjct: 607 LYRDRMVERGVAMTVATYNLLVHALFMDGR---GTEAYELVEEMGGKG-LAPDVFTYNIL 662

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + AL++ E+M   GV    +T+++LI A +  G V++   LF+E ++ G 
Sbjct: 663 INGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGI 722

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            P+    N L+ +   +   DRAF +            +GE           ME K    
Sbjct: 723 RPDLVLYNALINSHSTSGNIDRAFEI------------MGE-----------MEKK---- 755

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN 547
                                  P   TYN LM+  C        + L++EM   G+ P+
Sbjct: 756 --------------------RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPD 795

Query: 548 HISWTILIDACGGSGNVEGALQCR 571
            +++  LI      G+V+ AL+ R
Sbjct: 796 LVTYNTLISGYSMKGDVKDALRIR 819



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 126/302 (41%), Gaps = 61/302 (20%)

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +  S  +Y  ++S ++ ++    + L++       F L  + +M +L +     ++NI+L
Sbjct: 433 HATSLRLYSRMKSLSLPISTASLHPLLSALPSAPAFAL--FADMFRLRLPLCTTTFNIML 490

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           +  C AG    A E+  ++    A         TY+T++  F      Q AL +  +M  
Sbjct: 491 RHLCSAGKPARALELLRQMPRPNA--------VTYNTVIAGFCSRGRVQAALDIMREMRE 542

Query: 392 -AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPNSQCCNILLQACVEACQF 449
             G+ PN  T+ ++I+     G V++A+ +F+EML  G  +P +   N L+    +  + 
Sbjct: 543 RGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKL 602

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
           D A  L+R   + +  VA+                                         
Sbjct: 603 DTAL-LYRDRMVER-GVAM----------------------------------------- 619

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
               T  TYN+L+ A   D    +A  L+ EM   GL+P+  ++ ILI+     GNV+ A
Sbjct: 620 ----TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKA 675

Query: 568 LQ 569
           L+
Sbjct: 676 LE 677



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/175 (17%), Positives = 78/175 (44%), Gaps = 41/175 (23%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327
           G   ++  ++++   + +  ++ ++N+L+N ++   ++    E+   M+K  +  D  +Y
Sbjct: 705 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 764

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N L++  CL G    A+++  E+     +G+ + D+ TY+T++  ++     + AL+++ 
Sbjct: 765 NTLMRGLCLLGRVDEARKLIDEMTE---RGI-QPDLVTYNTLISGYSMKGDVKDALRIRN 820

Query: 388 DMLSA-----------------------------------GVTPNTITWSSLINA 407
           +M++                                    G+TP+  T+ SLI  
Sbjct: 821 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEG 875


>gi|168052832|ref|XP_001778843.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669712|gb|EDQ56293.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 953

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 99/247 (40%), Gaps = 57/247 (23%)

Query: 327 YNILLKACCLAGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
           +NIL+  CC  G      +   E  V++LE      L  F+++  ++ F        A +
Sbjct: 465 FNILIDFCCKQGKISQGLDFLDEMQVRNLE------LSSFSFNPFIREFGRWTMIDEAFE 518

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           +K  ML  GV P  +T++SLI+AC   G +E+A  LF EM + G E N+ C N L+Q   
Sbjct: 519 MKAAMLRLGVQPTVVTYNSLISACVKIGDLERACSLFPEMKELGVEANTHCYNPLIQGFA 578

Query: 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
              +FDRA  + RS   +                                          
Sbjct: 579 MQGRFDRALAVMRSMDAA------------------------------------------ 596

Query: 505 FDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
                  KP   TY +L+ AC    D  +   L  EM+   + P+   +T++I      G
Sbjct: 597 -----GVKPDVNTYRLLIFACSLSKDQDKADQLFAEMQEREIRPDESIYTVMIIVYSKCG 651

Query: 563 NVEGALQ 569
           NV+  ++
Sbjct: 652 NVDRGIE 658



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 109/235 (46%), Gaps = 6/235 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F  F+REFG+   +  A     A  +    P +    ++I  C   GD  ++ +++ +++
Sbjct: 500 FNPFIREFGRWTMIDEAFEMKAAMLRLGVQPTVVTYNSLISACVKIGDLERACSLFPEMK 559

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              V  N + +N L+   A   +F   L V ++M   GV  D+ +Y +L+ AC L+ +  
Sbjct: 560 ELGVEANTHCYNPLIQGFAMQGRFDRALAVMRSMDAAGVKPDVNTYRLLIFACSLSKDQD 619

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A +++ E++  E    ++ D   Y+ ++ V++        +++   +  +G T      
Sbjct: 620 KADQLFAEMQERE----IRPDESIYTVMIIVYSKCGNVDRGIEMIRSLEKSGETAGIEAK 675

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           S++++  A  G +E+A+ L+    +    P+S     LL A  +    D+ F LF
Sbjct: 676 SAILHGLAVTGRLEEALALYAVFKRERLLPHSYAVGTLLAALGKVGDLDKMFELF 730



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 8/229 (3%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           GK  D ++A R  +   +     +++    +ID C   G   +     ++++ +N+ L+ 
Sbjct: 440 GKLADAINAFRELEIVSQVKGGQHLF--NILIDFCCKQGKISQGLDFLDEMQVRNLELSS 497

Query: 292 YVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
           + FN  +        +    E+   M +LGV   + +YN L+ AC   G+   A  ++ E
Sbjct: 498 FSFNPFIREFGRWTMIDEAFEMKAAMLRLGVQPTVVTYNSLISACVKIGDLERACSLFPE 557

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +K L   GV + +   Y+ +++ FA    +  AL V   M +AGV P+  T+  LI AC+
Sbjct: 558 MKEL---GV-EANTHCYNPLIQGFAMQGRFDRALAVMRSMDAAGVKPDVNTYRLLIFACS 613

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            +   ++A  LF EM +    P+     +++    +    DR   + RS
Sbjct: 614 LSKDQDKADQLFAEMQEREIRPDESIYTVMIIVYSKCGNVDRGIEMIRS 662


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 168/374 (44%), Gaps = 44/374 (11%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICR-----TIIDVCGICGDYMKSRAIYED 281
           FV+  G++     AL  ++  +KH    + +  R     +I+ V G       +  ++E 
Sbjct: 8   FVKALGRQGKWKKALEVFEWIRKH----DCFKLRGVATASILSVLGNHEQLPAALELFES 63

Query: 282 LRS-QNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAG 338
           L+  ++ +L++Y + SL+++ +   +F   + +++ MQ+ G   +  +YN++L      G
Sbjct: 64  LKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRG 123

Query: 339 NTV-LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           ++    Q ++ E+K LE    +  D +TY+T++         Q AL++ ++M  AG  PN
Sbjct: 124 DSWDRIQSLFQEMKDLE----ISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPN 179

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +T+++L++     G+ ++A  L  EM  AG  PN    N L+ A   A   D A  L +
Sbjct: 180 RVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKK 239

Query: 458 SWTLSK-------TQVALGEDYDGNTDRISNMEHKDKQSITN-TPNFVPNS----HYSSF 505
           S  LSK       T   L   ++        +E   +   TN TPN V  +     Y   
Sbjct: 240 S-LLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRM 298

Query: 506 DKR------FSF------KPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISW 551
           +K       F F       P   T+N L+K+   C     V  +  EM+  G  P   ++
Sbjct: 299 EKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTF 358

Query: 552 TILIDACGGSGNVE 565
            ILI+  G  G V+
Sbjct: 359 NILIECYGRCGYVD 372



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 156/354 (44%), Gaps = 25/354 (7%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           +  +C  +  F +      AL  +   +K   +PN+     +ID+ G          +++
Sbjct: 250 EFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFK 309

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            ++ +N T ++  +NSL+    N   L     V++ M++ G M  + ++NIL++     G
Sbjct: 310 FMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCG 369

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               + +IY   K L   G L+  V T++ ++   A    WQ   KV ++M  AG+  + 
Sbjct: 370 YVDYSVDIY---KGLLRTG-LQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSD 425

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC-CNILLQACVEACQFDRAFRLFR 457
              + LI++ AN+G   Q     +E+ ++  +P S   C   + A  + C  + A     
Sbjct: 426 ACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEA----- 480

Query: 458 SWTLSKTQVALGEDYD-GNTDRISNMEHKDKQSITNTPNFVPNS-HYSSFDKRFSFKPTT 515
                  Q+AL + YD G++  I         S+     ++  +       ++   KP  
Sbjct: 481 -------QLALNQLYDNGHSPDIKVFNA--MISMCAKRGWIERAVKLLEEIRKAQLKPDG 531

Query: 516 TTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            TYN LM     +  Y++ + +M+EMR  G +PN I++  L+ +    G ++ A
Sbjct: 532 VTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDA 585



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 100/196 (51%), Gaps = 10/196 (5%)

Query: 241 LRAY-DASKKHLSSP-NMYICRT-IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           LR Y D  +K    P +  +C+T ++  C  C D     A+   L     + +I VFN++
Sbjct: 444 LRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLAL-NQLYDNGHSPDIKVFNAM 502

Query: 298 MNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           +++ A    ++  +++ + ++K  +  D  +YN L+      G    A+E+  E++    
Sbjct: 503 ISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMR---- 558

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +     ++ TY+T++  +        A +V  DM++A V P+  T+++L+ + ++ GL +
Sbjct: 559 RAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYK 618

Query: 416 QAMHLFEEMLQAGCEP 431
           +A+ + E M + GC+P
Sbjct: 619 EALSVIEYMTEHGCQP 634



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           SP++ +   +I +C   G   ++  + E++R   +  +   +N LM++   +  +    E
Sbjct: 493 SPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEE 552

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V   M++ G   ++ +YN LL +    G    A  ++G++        ++ D FT++T+V
Sbjct: 553 VMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDM----VAARVRPDNFTFNTLV 608

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             ++    ++ AL V E M   G  P  IT+ +L++ 
Sbjct: 609 GSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDG 645



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 51/95 (53%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  ++ ++ + A   W + A+K+ E++  A + P+ +T++ L++     G+  +A  + 
Sbjct: 495 DIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVM 554

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            EM +AG  PN    N LL +  +  + D A R+F
Sbjct: 555 SEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVF 589


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 137/309 (44%), Gaps = 34/309 (11%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASY 327
           ++ +++ I+ ++  Q V  ++  F+SL+ V   N H L   L  +++M+K G++ D   Y
Sbjct: 238 NFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRH-LDQALVYFRDMKKFGLVPDNVIY 296

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            +L+   C  GN + A +I  E+  LE   VL  DV  Y+TI+      K    A K+ +
Sbjct: 297 TVLMHGYCRNGNMLEALKIRDEM--LEQGCVL--DVIAYNTILNGLCKEKMLTDADKLFD 352

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M+  G  P+  T+++LI+     G + +A+ LF  M Q   +P+    N L+    +  
Sbjct: 353 EMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVG 412

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
           + ++A  L                +DG   R     H     + N   +    H S   +
Sbjct: 413 EMEKASEL----------------WDGMISRKIFPNHITYGILINA--YCSVGHVSEAFR 454

Query: 508 RF------SFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
            +        KPT  T N ++K  C   D  +    +  M   G++P+HIS+  LI+   
Sbjct: 455 LWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFV 514

Query: 560 GSGNVEGAL 568
              N++ A 
Sbjct: 515 REDNMDKAF 523



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 150/350 (42%), Gaps = 44/350 (12%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           F + +  F + R L  AL  +   KK    P+  I   ++   G C  G+ +++  I ++
Sbjct: 261 FSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMH--GYCRNGNMLEALKIRDE 318

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q   L++  +N+++N    +   T   +++  M + G + D  ++  L+   C  GN
Sbjct: 319 MLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGN 378

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  ++G +        +K D+  Y+T++  F      + A ++ + M+S  + PN I
Sbjct: 379 MTKALSLFGTMTQRN----IKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHI 434

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+  LINA  + G V +A  L++ M++ G +P    CN +++     C         RS 
Sbjct: 435 TYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKG---YC---------RSG 482

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN-FVPNSHYSSFDKRF--------- 509
             SK    LG         I+     D  S     N FV   +    DK F         
Sbjct: 483 DSSKADEFLGR-------MIAKGVAPDHISYNTLINGFVREDN---MDKAFLWINKMEKE 532

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
              P   TYN++M   C      +A  ++ +M   G++P+  ++T LI+ 
Sbjct: 533 GLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALING 582



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 120/258 (46%), Gaps = 20/258 (7%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M  +G+  D  +YN LL   C   N   A+EI+GE+     +GV+  D+ ++S+++ VF+
Sbjct: 214 MLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLR---QGVVP-DLVSFSSLIAVFS 269

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAGCEPNS 433
             +    AL    DM   G+ P+ + ++ L++  C N  ++E A+ + +EML+ GC  + 
Sbjct: 270 RNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLE-ALKIRDEMLEQGCVLDV 328

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
              N +L    +      A +LF        + AL + Y   T     + H   Q    T
Sbjct: 329 IAYNTILNGLCKEKMLTDADKLFDEMV---ERGALPDFYTFTT-----LIHGHCQDGNMT 380

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISW 551
                 S + +  +R + KP    YN L+   C   +  +   L + M +  + PNHI++
Sbjct: 381 KAL---SLFGTMTQR-NIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITY 436

Query: 552 TILIDACGGSGNVEGALQ 569
            ILI+A    G+V  A +
Sbjct: 437 GILINAYCSVGHVSEAFR 454



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 160/380 (42%), Gaps = 43/380 (11%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDA--SKKHLSSPNMYICRTIIDVCGICG-DYMK-SR 276
           +++F   +R + + R L     A+    SK +L S N   C +++   G+   D+++ + 
Sbjct: 48  NLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINA--CNSLLG--GLVKIDWVELAW 103

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
            ++ ++    + LN+Y  N ++N    D KF         M+  G+ ADM +YN L+ A 
Sbjct: 104 EVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAY 163

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C  G   L +E +  +  +  KG LK  +FTY+ I+        +  A  +  +ML+ G+
Sbjct: 164 CREG---LLEEAFEIMNSMADKG-LKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGL 219

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA-- 452
           +P+T T+++L+          +A  +F EML+ G  P+    + L+         D+A  
Sbjct: 220 SPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALV 279

Query: 453 -FRLFRSWTLSKTQV---ALGEDYDGNTDRISNMEHKDK-------------QSITNTPN 495
            FR  + + L    V    L   Y  N + +  ++ +D+              +I N   
Sbjct: 280 YFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILN--G 337

Query: 496 FVPNSHYSSFDKRF------SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
                  +  DK F         P   T+  L+   C D    KA  L   M    + P+
Sbjct: 338 LCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPD 397

Query: 548 HISWTILIDACGGSGNVEGA 567
            +++  LID     G +E A
Sbjct: 398 IVAYNTLIDGFCKVGEMEKA 417



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 134/317 (42%), Gaps = 43/317 (13%)

Query: 265 VCGICGD-----------YMKSRAIYED------LRSQNVTLNIYVFNSLMN--VNAHDL 305
           +CG CG            Y+++R + E       LRS+   ++I   NSL+   V    +
Sbjct: 40  MCGNCGTNNLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWV 99

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           +   EV++ + + G+  ++ + NI++ A C  G      ++   +  +E  G+   D+ T
Sbjct: 100 ELAWEVHREVVRSGIELNVYTLNIMVNALCKDGK---FDDVKSFLSEMEGNGIYA-DMVT 155

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+T++  +      + A ++   M   G+ P+  T++++IN     G   +A  +  EML
Sbjct: 156 YNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEML 215

Query: 426 QAGCEPNSQCCNILLQACVEACQ---FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
             G  P++   N LL   VE+C+   F  A  +F    L +  V     +       S  
Sbjct: 216 NIGLSPDTTTYNTLL---VESCRRDNFSEAKEIFGE-MLRQGVVPDLVSFSSLIAVFSRN 271

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMR 540
            H D+  +           Y    K+F   P    Y +LM   C +   ++AL   +EM 
Sbjct: 272 RHLDQALV-----------YFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEML 320

Query: 541 TVGLSPNHISWTILIDA 557
             G   + I++  +++ 
Sbjct: 321 EQGCVLDVIAYNTILNG 337



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 102/236 (43%), Gaps = 10/236 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           F   +    +  ++  AL  +    +    P++    T+ID  G C  G+  K+  +++ 
Sbjct: 366 FTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLID--GFCKVGEMEKASELWDG 423

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S+ +  N   +  L+N   +   +     ++  M + G+   + + N ++K  C +G+
Sbjct: 424 MISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGD 483

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           +  A E  G    + AKGV   D  +Y+T++  F        A      M   G+ P+ I
Sbjct: 484 SSKADEFLG---RMIAKGVAP-DHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDII 539

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           T++ ++N     G +++A  +  +M++ G  P+      L+   V     + AFR 
Sbjct: 540 TYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRF 595



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/290 (20%), Positives = 120/290 (41%), Gaps = 20/290 (6%)

Query: 286 NVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
           N   N  VF+ L+   V A  L+   E ++ ++  G +  + + N LL          LA
Sbjct: 43  NCGTNNLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELA 102

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            E++ EV     +  ++L+V+T + +V        +        +M   G+  + +T+++
Sbjct: 103 WEVHREV----VRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNT 158

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           LI A    GL+E+A  +   M   G +P+    N ++    +  ++ RA    +   +  
Sbjct: 159 LIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARA----KGILIEM 214

Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
             + L  D       +     +D        NF           R    P   +++ L+ 
Sbjct: 215 LNIGLSPDTTTYNTLLVESCRRD--------NFSEAKEIFGEMLRQGVVPDLVSFSSLIA 266

Query: 524 ACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
               + +  +AL+   +M+  GL P+++ +T+L+     +GN+  AL+ R
Sbjct: 267 VFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIR 316


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 121/286 (42%), Gaps = 34/286 (11%)

Query: 309  LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            ++++  M K G++ D  +Y IL+   C A  T LA ++     H + KG  K DVFTY  
Sbjct: 1036 VQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKL-----HEKMKGNCKGDVFTYGM 1090

Query: 369  IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            I+           AL +  +M+ AG+ P+ + +SSL++     G +++A+  F+EM   G
Sbjct: 1091 IIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRG 1150

Query: 429  CEPNSQCCNILLQACVEACQF-----------DRAFRLFRSWTLSKTQVAL-GEDYDGNT 476
               +    N L+     A  +           DR F    ++T +     L  E   G  
Sbjct: 1151 ISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSP-DAFTFTILIDGLCKEGKVGEA 1209

Query: 477  DRISN-MEHKDKQSITNTPNFVPNS------------HYSSFDKRFSFKPTTTTYNILMK 523
             +I   M HK K+    T N + N              + S   R   K    +YNIL+ 
Sbjct: 1210 QQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADR-GIKLNVFSYNILIN 1268

Query: 524  ACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              C D    +A     EMR  GL P+ +++  LI A   SG V  A
Sbjct: 1269 GYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTA 1314



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 132/314 (42%), Gaps = 61/314 (19%)

Query: 262  IIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQK 317
            IID   +C D M + A+  + ++    +  ++ V++SLM+       LK  LE +K M+ 
Sbjct: 1091 IID--ALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEG 1148

Query: 318  LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
             G+ AD+ +YN L+     AG   L +E+   +  +  +G    D FT++ ++       
Sbjct: 1149 RGISADVYTYNSLIHGLSRAG---LWKEVTWFLNLMVDRG-FSPDAFTFTILIDGLCKEG 1204

Query: 378  WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
                A ++ E M   G  P+ +T+++L+N     G +E A  LFE +   G + N    N
Sbjct: 1205 KVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYN 1264

Query: 438  ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
            IL+    +  + D AFR F                          E + K          
Sbjct: 1265 ILINGYCKDQKIDEAFRFFE-------------------------EMRPK---------- 1289

Query: 498  PNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTIL 554
                          KP+T TYN L+ A C    RV+    L  EM+T G      ++ +L
Sbjct: 1290 ------------GLKPSTVTYNTLIGALCQS-GRVRTAQKLFVEMQTCGQFLKLSTYCVL 1336

Query: 555  IDACGGSGNVEGAL 568
            +D    +G++E A+
Sbjct: 1337 LDGLCKNGHLEEAM 1350



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 106/236 (44%), Gaps = 33/236 (13%)

Query: 254  PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
            P++    T+++   + G    +  ++E L  + + LN++ +N L+N    D K       
Sbjct: 1223 PDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRF 1282

Query: 312  YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK-------------------- 351
            ++ M+  G+     +YN L+ A C +G    AQ+++ E++                    
Sbjct: 1283 FEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCK 1342

Query: 352  --HLE---------AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
              HLE          K   K ++  +S ++     A   + A K  +++   G+ P+TI 
Sbjct: 1343 NGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIA 1402

Query: 401  WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            ++ LIN   N G++ +A+ L  +M + GC P+S   N+++Q  ++  +   A +L 
Sbjct: 1403 YNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLL 1458



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 149/361 (41%), Gaps = 67/361 (18%)

Query: 254  PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN------------ 299
            P++ +  +++D  G+C  G   ++   ++++  + ++ ++Y +NSL++            
Sbjct: 1118 PDVVVYSSLMD--GLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVT 1175

Query: 300  ----------VNAHDLKFTL---------------EVYKNMQKLGVMADMASYNILLKAC 334
                       +     FT+               ++ + M+  G   D+ +YN L+   
Sbjct: 1176 WFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGL 1235

Query: 335  CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
            CL G    A +++   + L  +G+ KL+VF+Y+ ++  +   +    A +  E+M   G+
Sbjct: 1236 CLVGQLEDATKLF---ESLADRGI-KLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGL 1291

Query: 395  TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             P+T+T+++LI A   +G V  A  LF EM   G         +LL    +    + A  
Sbjct: 1292 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMD 1351

Query: 455  LFRSW--TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK--RFS 510
            LF+S   T  K  + +         R   +E   KQ                FD+  +  
Sbjct: 1352 LFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQ----------------FDEISKNG 1395

Query: 511  FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             +P T  YNIL+   C      +A  L+ +M   G  P+ I++ ++I        +  A+
Sbjct: 1396 LEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAI 1455

Query: 569  Q 569
            Q
Sbjct: 1456 Q 1456


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 132/297 (44%), Gaps = 35/297 (11%)

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           R QNVTLN  +   L + N  D    + V++ M +LG   D+ SYN L+K  C+   +  
Sbjct: 123 RVQNVTLN-QLIKGLCDGNRTDDAMDM-VFRRMPELGYTPDVFSYNALIKGLCVEKKSQE 180

Query: 343 AQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
           A E+   + H+ A G      +V +Y+T++  F        A  +  +M+  G+ P+ +T
Sbjct: 181 ALEL---LIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVT 237

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++SLI+    A  +++A+ + + M   G  P+++  NI+++      Q + A RL +  +
Sbjct: 238 YNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMS 297

Query: 461 LSKTQ-----VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK--RFSFKP 513
            S  Q      +L   Y     R +                      S FD   R   KP
Sbjct: 298 GSGLQPDVVTYSLLIQYYCKIGRCAEAR-------------------SVFDSMVRKGQKP 338

Query: 514 TTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            +T Y+IL+    T      V+ L++ M   G+   H ++ ILI A    G V+ A+
Sbjct: 339 NSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAM 395



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 135/318 (42%), Gaps = 24/318 (7%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN+    T+ID     G+  K+  ++ ++  Q +  ++  +NSL++    A  +   + 
Sbjct: 197 SPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVA 256

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + ++M   GVM D  +YNI+++  C  G     +E    +K +   G L+ DV TYS ++
Sbjct: 257 ILQHMFDKGVMPDTRTYNIMIRGYCSLGQL---EEAVRLLKKMSGSG-LQPDVVTYSLLI 312

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           + +        A  V + M+  G  PN+  +  L++  A  G +     L + M++ G  
Sbjct: 313 QYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIP 372

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
              +  NIL+ A  +    D+A   F              +   N  R   + +     I
Sbjct: 373 FEHRAFNILICAYAKHGAVDKAMTAF-------------TEMRQNGLRPDVVSYSTVIHI 419

Query: 491 TNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
                 V ++ Y  F++  S    P   ++  L+   C+  ++ +V+ L  EM   G+ P
Sbjct: 420 LCKTGRVEDAVY-HFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHP 478

Query: 547 NHISWTILIDACGGSGNV 564
           + I    ++D     G V
Sbjct: 479 DAIFMNTIMDNLCKEGRV 496



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 115/250 (46%), Gaps = 10/250 (4%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           +IL C + +     +    A+ A+   +++   P++    T+I +    G    +   + 
Sbjct: 379 NILICAYAKHGAVDK----AMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFN 434

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            + S+ ++ NI  F SL++   +  + K   E+   M   G+  D    N ++   C  G
Sbjct: 435 QMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEG 494

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
             V AQ+ +  V H+   GV K DV +Y+T++  +        ++K  + M+S G+ P++
Sbjct: 495 RVVEAQDFFDMVIHI---GV-KPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDS 550

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            T++SL+N     G VE A+ L+ EM +   +  +   NI+L    +A +   A  L+  
Sbjct: 551 WTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMK 610

Query: 459 WTLSKTQVAL 468
                TQ+ +
Sbjct: 611 MVDRGTQLRI 620



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 4/143 (2%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+Y  M   G    + +YN +L   C       A  ++ +++  E     +LDV T+S +
Sbjct: 606 ELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKE----FELDVRTFSIV 661

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A  +   M+  G  P+ IT+S +I +    GL+E++ +LF  M + GC
Sbjct: 662 INALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGC 721

Query: 430 EPNSQCCNILLQACVEACQFDRA 452
             +S   NI+++  +E     RA
Sbjct: 722 AADSHMLNIIVRRLLEKGDVRRA 744



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 113/241 (46%), Gaps = 7/241 (2%)

Query: 221 DILFCNFVRE-FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           D +F N + +   K+  +V A   +D        P++    T+ID     G   +S    
Sbjct: 479 DAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQL 538

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           + + S  +  + + +NSL+N       ++  L +Y+ M +  V     + NI+L     A
Sbjct: 539 DRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQA 598

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G  V A+E+Y  +K ++    L+++  TY+T++    +      AL++ ED+ S     +
Sbjct: 599 GRIVAARELY--MKMVDRGTQLRIE--TYNTVLGGLCENSCVDEALRMFEDLRSKEFELD 654

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             T+S +INA    G +++A  LF  M+  G  P+    ++++++ +E    + +  LF 
Sbjct: 655 VRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFL 714

Query: 458 S 458
           S
Sbjct: 715 S 715


>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 856

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 141/331 (42%), Gaps = 33/331 (9%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           T+I + G    +   R + +++ S N    +  +N +++    A+ L+  ++V++ M+  
Sbjct: 368 TMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEGA 427

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  +Y  L+     +G   +A ++YG ++ +     L  D FTYS +V        
Sbjct: 428 GYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVG----LSPDTFTYSAMVNCLGKGGQ 483

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A K+  +M+  G TPN +T++ +I   A A   +  + L+ +M  AG  P+    +I
Sbjct: 484 LAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSI 543

Query: 439 LLQACVEACQFDRAFRLF----RSWTLSKTQVALGEDY---DGNTDRISNMEHKDKQSIT 491
           +++        D A  +F    R W   +    L  D     GN D+     H   Q   
Sbjct: 544 VMEVLGHCGHLDEAEAVFLEMRRDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGL 603

Query: 492 NTPNFVP--NSHYSSFDKRFSFK---------------PTTTTYNILMKACCTDYYRVKA 534
             PN VP  NS  S+F K   F+               P+  TY +L+ +CCTD +    
Sbjct: 604 Q-PN-VPTCNSLLSAFLKLNRFQDAYGVLQNMLAQGLVPSLQTYTLLL-SCCTDAHAQMG 660

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           L  ++  +   P H+    L DA  G  NV 
Sbjct: 661 LCCQLMAITGHPAHMFLLYLPDAEPGGENVR 691



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 7/227 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  +    K   L  A+  Y   ++   SP+ +    +++  G  G    +  ++ +
Sbjct: 434 VTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCE 493

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +     T N+  +N ++ + A    +   +++Y++MQ  G   D  +Y+I+++     G+
Sbjct: 494 MIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGH 553

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ ++     LE +     D   Y  +V ++  A     AL     ML  G+ PN  
Sbjct: 554 LDEAEAVF-----LEMRRDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVP 608

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           T +SL++A       + A  + + ML  G  P+ Q   +LL  C +A
Sbjct: 609 TCNSLLSAFLKLNRFQDAYGVLQNMLAQGLVPSLQTYTLLLSCCTDA 655


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 171/376 (45%), Gaps = 38/376 (10%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + + + +  + +   L  A+   D   +    P+++   T++      G    +  I+ +
Sbjct: 359 VTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGE 418

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R+     NI  FN+L+ ++ +  +F   ++V++ ++      D+ ++N LL    + G 
Sbjct: 419 MRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLL---AVFGQ 475

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             +  E+ G  K ++  G +  +  T++T++  ++    +Q A+ V + ML AGVTP+  
Sbjct: 476 NGMDSEVSGVFKEMKRAGFVP-ERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLS 534

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR----AFRL 455
           ++++++ A A  GL EQ+  +F EM    C+PN      LL A   + + +R    A  +
Sbjct: 535 SYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEI 594

Query: 456 FRSWT-----LSKTQVALGEDYDGNTDRISNMEHK-DKQSITNTPNFVP-NSHYSSFDKR 508
           +   T     L KT V +    +   D +   EH  ++     +P+    N+  + + +R
Sbjct: 595 YSGLTEPVPVLLKTLVLV----NSKCDLLMETEHAFEELKKKGSPDLSTLNAMIAIYGRR 650

Query: 509 ---------------FSFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISW 551
                            F P+  TYN L  M +   ++ R + ++ E+   GL P+ IS+
Sbjct: 651 QMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISY 710

Query: 552 TILIDACGGSGNVEGA 567
             +I A   +G ++ A
Sbjct: 711 NTVIFAYCRNGRMKDA 726



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 147/346 (42%), Gaps = 44/346 (12%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLN 290
           G+ RD   A+  +   ++    P +     I++V G  G  + K   +   ++S  V  +
Sbjct: 231 GRYRD---AVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPD 287

Query: 291 IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            Y +N+L++        +   +V++ M+  G   D  ++N LL    + G +   +E   
Sbjct: 288 DYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLD---VYGKSRRPKEAME 344

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            +K +E  G     + TY++++  +A     + A+++K+ M+  G+ P+  T+++L++  
Sbjct: 345 VLKEMEFSG-FSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGF 403

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW--------- 459
             AG+ E AM +F EM  AGC+PN    N L++      +F    ++F            
Sbjct: 404 EKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDI 463

Query: 460 -TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
            T +      G+  +G    +S +  +                     KR  F P   T+
Sbjct: 464 VTWNTLLAVFGQ--NGMDSEVSGVFKE--------------------MKRAGFVPERDTF 501

Query: 519 NILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
           N L+ A   C  + +  A+   M   G++P+  S+  ++ A    G
Sbjct: 502 NTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGG 547



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 107/224 (47%), Gaps = 7/224 (3%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           ++ +C+ +  +   +++       +     L+ P   + +T++ V   C   M++   +E
Sbjct: 568 ELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFE 627

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           +L+ +  + ++   N+++ +      +    E+   M + G    +A+YN L+     + 
Sbjct: 628 ELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSE 686

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           N   ++E+   +K + AKG LK D+ +Y+T++  +      + A ++   M + G+ P+ 
Sbjct: 687 NFERSEEV---LKEILAKG-LKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDV 742

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           IT+++ + + A   L E A+ +   M++ GC+ N    N ++  
Sbjct: 743 ITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDG 786



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 89/222 (40%), Gaps = 25/222 (11%)

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           K    LDV+ Y++++  +A    ++ A+ V + M   G  P  IT++ ++N     G+  
Sbjct: 210 KDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPW 269

Query: 416 QAMH-LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS-----KTQVALG 469
             +  L   M  +G  P+    N L+  C     ++ A ++F    LS     K      
Sbjct: 270 SKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTL 329

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
            D  G + R      K+   +     F              F P+  TYN L+ A   D 
Sbjct: 330 LDVYGKSRR-----PKEAMEVLKEMEFS------------GFSPSIVTYNSLISAYARDG 372

Query: 530 YRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              +A  L ++M   G+ P+  ++T L+     +G  E A++
Sbjct: 373 LLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMR 414


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 138/343 (40%), Gaps = 64/343 (18%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAI 278
           D ++   +  + K +D   A +      K+   P +     I+D  G+C  G    +  +
Sbjct: 45  DAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVD--GLCKAGRTKDAVKL 102

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACC 335
            +++R +  + NIY +N ++     + K   E  K ++++   G   D+ +YN  +K  C
Sbjct: 103 LDEMRDKGCSPNIYTYNVIVEGLCEERKLD-EAKKMLEEMAVRGYFPDVVTYNSFIKGLC 161

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
                        E +   A+  +  DV +Y+T++     +     A ++ + M + G T
Sbjct: 162 KCDRV-------DEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCT 214

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +T+SSLI+     G VE+AM L + ML+ GC PN    N LL A            L
Sbjct: 215 PDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGA------------L 262

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
            R   + K +           D +  ME                        R  F P  
Sbjct: 263 HRLGHIGKAE-----------DMLVEME------------------------RRGFTPDV 287

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILID 556
            +YN  +   C      + KA+ + M   G +PN  S+++L++
Sbjct: 288 VSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVE 330



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 105/248 (42%), Gaps = 21/248 (8%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D  ++ ILL+  C +     A+++ G +K +   G +  D   Y+ ++  ++ AK +  A
Sbjct: 9   DAFTFAILLRGLCRSNQLEKARQLLGRMKEM---GCVPDDAI-YNALISGYSKAKDFGQA 64

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            K   +M+     P  +T++++++    AG  + A+ L +EM   GC PN    N++++ 
Sbjct: 65  FKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEG 124

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
             E  + D A ++     + +        Y+     +   +  D+               
Sbjct: 125 LCEERKLDEAKKMLEEMAV-RGYFPDVVTYNSFIKGLCKCDRVDEA-------------- 169

Query: 503 SSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560
             F  R    P   +Y  ++   C   D      ++++M   G +P+ ++++ LID    
Sbjct: 170 RKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCK 229

Query: 561 SGNVEGAL 568
            G VE A+
Sbjct: 230 GGEVERAM 237



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/410 (19%), Positives = 158/410 (38%), Gaps = 69/410 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIY 279
           + + N V    K      A++  D  +    SPN+Y    I++  G+C +    +++ + 
Sbjct: 81  VTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVE--GLCEERKLDEAKKML 138

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           E++  +    ++  +NS +           E  K + ++ V  D+ SY  ++   C +G+
Sbjct: 139 EEMAVRGYFPDVVTYNSFIK-GLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGD 197

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  +   +  +  +G    DV TYS+++  F      + A+ + + ML  G  PN +
Sbjct: 198 LDSASRM---LDQMTNRGCTP-DVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMV 253

Query: 400 TWSSLI-------------------------------NACAN----AGLVEQAMHLFEEM 424
            ++SL+                               NAC +    A  V++A  +F+ M
Sbjct: 254 AYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRM 313

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS------------WTLSKTQVALGEDY 472
           ++ GC PN+   ++L++   +  + D A  L               +T+    +  G  +
Sbjct: 314 VERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRF 373

Query: 473 DGNTDRISN-MEHKDKQSITNTPNFVPNSH--YSSFDKRFSFKP--------TTTTYNIL 521
           D      S  ++ K  +      N + +SH      DK                 T+NIL
Sbjct: 374 DEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNIL 433

Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +   C D      + ++  M   G  P+ +++  L+DA    G    AL+
Sbjct: 434 VHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALE 483



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 109/273 (39%), Gaps = 31/273 (11%)

Query: 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
           ++ L+   ++   M+++G + D A YN L+     A +   A +   E+     K     
Sbjct: 23  SNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEM----VKNHCLP 78

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
            V TY+ IV     A   + A+K+ ++M   G +PN  T++ ++        +++A  + 
Sbjct: 79  TVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKML 138

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-----TLSKTQVALGEDYDGNT 476
           EEM   G  P+    N  ++   +  + D A +           +S T V  G    G+ 
Sbjct: 139 EEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDL 198

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKA 534
           D  S M  +    +TN                    P   TY+ L+   C   +  R   
Sbjct: 199 DSASRMLDQ----MTNR----------------GCTPDVVTYSSLIDGFCKGGEVERAMG 238

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           L++ M  +G  PN +++  L+ A    G++  A
Sbjct: 239 LLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKA 271



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 44/231 (19%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K++A+++ +  +  T N   ++ L+       +L   + + +  ++   + D+  Y +LL
Sbjct: 305 KAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLL 364

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML- 390
              C  G    A  ++ +V  L+ K + + DVF Y+ ++      +    AL++ + ML 
Sbjct: 365 DGLCKGGRFDEACALFSKV--LDEK-ICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLE 421

Query: 391 ---------------------------------SAGVTPNTITWSSLINACANAGLVEQA 417
                                              G  P+ +T+ +L++A    G    A
Sbjct: 422 RNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAA 481

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468
           + LFEE ++ GC P+    + L+   V     + A+ LF     +K  VAL
Sbjct: 482 LELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLF-----TKLDVAL 527



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/241 (17%), Positives = 108/241 (44%), Gaps = 40/241 (16%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRS 284
            V E  KK++L  A+   + +++     ++ +   ++D  G+C  G + ++ A++  +  
Sbjct: 328 LVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLD--GLCKGGRFDEACALFSKVLD 385

Query: 285 QNV-TLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           + +   +++ +N +++ +     +   L+++K M +     ++ ++NIL+   C+     
Sbjct: 386 EKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNC-CNVVTWNILVHGLCVDDRLS 444

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A+ +   +  +  +G +  D  TY T+V           AL++ E+ +  G  P+ +T+
Sbjct: 445 DAETM---LLTMVDEGFIP-DFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTY 500

Query: 402 SSLINACANAGLVEQA----------------------------MHLFEEMLQAGCEPNS 433
           S+LI    +  + E+A                            + LF E++++  EPN+
Sbjct: 501 SALITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNA 560

Query: 434 Q 434
           +
Sbjct: 561 R 561



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 12/152 (7%)

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            LE+++   K G + D+ +Y+ L+        T L  E   E  +L      KLDV  ++
Sbjct: 481 ALELFEEAVKGGCVPDVVTYSALI--------TGLVHENMAEEAYLL---FTKLDVALWN 529

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQ 426
            ++  +A+     + LK+  +++ + V PN  T+   I+     A  + +A  LF+  ++
Sbjct: 530 AMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVK 589

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            G  P+    N L+    +    + A R+F S
Sbjct: 590 GGFFPDLFVANTLIDVFAKCGDLEEARRIFYS 621


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 105/485 (21%), Positives = 203/485 (41%), Gaps = 98/485 (20%)

Query: 112 SLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP--------LELFDGSG-----FKLL 158
           SL+  +S +V   +   I+ V+G+LK++  LG+ P        + +   +G     +++L
Sbjct: 224 SLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEIL 283

Query: 159 KNECQRLLDSG---EVEMFVGLMEVLEEFRLPVKELD---EEFRIVQLCVNKPDVNLAIR 212
           K    R+ D G   +V  +  L++ L       ++LD   E F  ++   +KPD    + 
Sbjct: 284 K----RMDDEGCGPDVVTYTVLIDAL----CTARKLDCAKEVFAKMKTGRHKPD---RVT 332

Query: 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
           Y  ++ R           F   RDL S  + +   +K    P++     ++D     G++
Sbjct: 333 YITLLDR-----------FSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNF 381

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
            ++ A  + +R Q +  N++ +N+L+   +  H L   LE++ NM+ LGV     +Y + 
Sbjct: 382 GEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVF 441

Query: 331 LKACCLAGNTVLAQEIYGEVKHLE-AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           +     +G++V A E + ++K    A  ++  +   YS + K   D +  Q+   +K+  
Sbjct: 442 IDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYS-LAKAGRDREAKQIFYGLKD-- 498

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
              G+ P+++T++ ++   +  G +++A+ L  EM++  CEP+    N L+    +A + 
Sbjct: 499 --IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRV 556

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
           D A+++F                                                  K  
Sbjct: 557 DEAWKMFMRM-----------------------------------------------KEM 569

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             KPT  TYN L+     +    +A  L   M   G  PN I++  L D    +  V  A
Sbjct: 570 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLA 629

Query: 568 LQCRF 572
           L+  F
Sbjct: 630 LKMLF 634



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 7/218 (3%)

Query: 244  YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--N 301
            YD       SP       +ID     G   +++ ++E +       N  ++N L+N    
Sbjct: 881  YDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGK 940

Query: 302  AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
            A +      ++K M K GV  D+ +Y++L+   C+ G        + E+K    +  L  
Sbjct: 941  AGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELK----ESGLNP 996

Query: 362  DVFTYSTIVKVFADAKWWQMALKVKEDML-SAGVTPNTITWSSLINACANAGLVEQAMHL 420
            DV  Y+ I+         + AL +  +M  S G+TP+  T++SLI     AG+VE+A  +
Sbjct: 997  DVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKI 1056

Query: 421  FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            + E+ +AG EPN    N L++    + + + A+ ++++
Sbjct: 1057 YNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQT 1094



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 97/475 (20%), Positives = 179/475 (37%), Gaps = 89/475 (18%)

Query: 180 VLEEFRL--PVKELDEEFRIVQLCVNKPDVNLAIR-YACIVPRADILFCNF----VREFG 232
           +LE  R+   ++E+   F ++Q  + K D N  +  + C+  +  +    F    +REFG
Sbjct: 126 MLEALRVDGKIEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFG 185

Query: 233 ----------------KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
                           K R    A+  Y         P++    +++   G   D     
Sbjct: 186 FVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVM 245

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            + +++ +  +  N+Y F   + V   A  +    E+ K M   G   D+ +Y +L+ A 
Sbjct: 246 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 305

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C A     A+E++ ++K     G  K D  TY T++  F+D +      +   +M   G 
Sbjct: 306 CTARKLDCAKEVFAKMK----TGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGH 361

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+ +T++ L++A   AG   +A    + M   G  PN    N L+   +   + D A  
Sbjct: 362 VPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALE 421

Query: 455 LFRSW------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITN-TPNFVP-NSHYSSFD 506
           +F +         + T +   + Y  + D +S +E  +K       PN V  N+   S  
Sbjct: 422 IFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 481

Query: 507 KR---------------FSFKPTTTTYNILMKA--------------------CC-TDYY 530
           K                    P + TYN++MK                     CC  D  
Sbjct: 482 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVI 541

Query: 531 RVKALMN----------------EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            V +L+N                 M+ + L P  +++  L+   G +G ++ A++
Sbjct: 542 VVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIE 596



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 132/301 (43%), Gaps = 25/301 (8%)

Query: 275  SRAIYEDL-RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
            +R ++E   +   V   +  +N L+   + A  ++   +V+  ++  G + D+A+YN LL
Sbjct: 770  ARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLL 829

Query: 332  KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
             A   +G      EIY E+   E +     +  T++ ++     A     AL +  D++S
Sbjct: 830  DAYGKSGKIDELFEIYKEMSAHECEP----NTITHNIVISGLVKAGNVDDALDLYYDLMS 885

Query: 392  -AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
                +P   T+  LI+  + +G + +A  LFE M   GC PN    NIL+    +A + D
Sbjct: 886  DRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEAD 945

Query: 451  RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
             A  LF+       +  L + Y    D +  +   D+             HY    K   
Sbjct: 946  AACALFKRMVKEGVRPDL-KTYSVLVDCLCMVGRVDE-----------GLHYFRELKESG 993

Query: 511  FKPTTTTYNILMKACCTDYYRVK---ALMNEM-RTVGLSPNHISWTILIDACGGSGNVEG 566
              P    YN+++      ++R++    L NEM ++ G++P+  ++  LI   G +G VE 
Sbjct: 994  LNPDVVCYNLIING-LGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEE 1052

Query: 567  A 567
            A
Sbjct: 1053 A 1053



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/403 (20%), Positives = 154/403 (38%), Gaps = 68/403 (16%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
           F+  +GK  D VSAL  ++  K    +PN+  C   +      G   +++ I+  L+   
Sbjct: 441 FIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIG 500

Query: 287 VTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +  +   +N +M   +   ++   +++   M +     D+   N L+     A     A 
Sbjct: 501 LVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAW 560

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           +++  +K ++    LK  V TY+T++         Q A+++ E M+  G  PNTIT+++L
Sbjct: 561 KMFMRMKEMK----LKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 616

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW----- 459
            +       V  A+ +  +M+  GC P+    N ++   V+  Q   A   F        
Sbjct: 617 FDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVY 676

Query: 460 -------TLSKTQVALGEDYDGN----------TDRISNMEHKD-------KQSITNTPN 495
                  TL    V  G   D             D+ +N+  +D       +  I N  +
Sbjct: 677 PDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLFWEDLMGSILAEAGIDNAVS 736

Query: 496 F-----------------VPNSHYS--------------SFDKRFSFKPTTTTYNILMKA 524
           F                 VP   YS               F K    +P   TYN+L+  
Sbjct: 737 FSERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGG 796

Query: 525 CC-TDYYRV-KALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
               D   + + +  +++  G  P+  ++  L+DA G SG ++
Sbjct: 797 LLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKID 839



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 94/256 (36%), Gaps = 60/256 (23%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL------------DVFTYSTIVKVF 373
           S  ++    C  G+++L   I    KH  A G   L             + TY+ ++   
Sbjct: 738 SERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGL 797

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
            +A   ++A  V   + + G  P+  T++ L++A   +G +++   +++EM    CEPN+
Sbjct: 798 LEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNT 857

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
              NI++   V+A   D A  L+               YD  +DR               
Sbjct: 858 ITHNIVISGLVKAGNVDDALDLY---------------YDLMSDR--------------- 887

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISW 551
                            F PT  TY  L+         Y  K L   M   G  PN   +
Sbjct: 888 ----------------DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIY 931

Query: 552 TILIDACGGSGNVEGA 567
            ILI+  G +G  + A
Sbjct: 932 NILINGFGKAGEADAA 947



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 89/183 (48%), Gaps = 7/183 (3%)

Query: 227  FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
             +  FGK  +  +A   +    K    P++     ++D   + G   +    + +L+   
Sbjct: 934  LINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESG 993

Query: 287  VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLA 343
            +  ++  +N ++N     H L+  L ++  M+K  G+  D+ +YN L+    +AG    A
Sbjct: 994  LNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEA 1053

Query: 344  QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
             +IY E++    +  L+ +VFT++ +++ ++ +   + A  V + M++ G +PNT T+  
Sbjct: 1054 GKIYNEIQ----RAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQ 1109

Query: 404  LIN 406
            L N
Sbjct: 1110 LPN 1112



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/213 (19%), Positives = 94/213 (44%), Gaps = 7/213 (3%)

Query: 254  PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
            P++     ++D  G  G   +   IY+++ +     N    N +++  V A ++   L++
Sbjct: 820  PDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDL 879

Query: 312  YKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            Y ++      +  A +Y  L+     +G    A++++  +     +     +   Y+ ++
Sbjct: 880  YYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRP----NCAIYNILI 935

Query: 371  KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
              F  A     A  + + M+  GV P+  T+S L++     G V++ +H F E+ ++G  
Sbjct: 936  NGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLN 995

Query: 431  PNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
            P+  C N+++    +  + + A  LF     S+
Sbjct: 996  PDVVCYNLIINGLGKFHRLEEALVLFNEMKKSR 1028


>gi|125560423|gb|EAZ05871.1| hypothetical protein OsI_28108 [Oryza sativa Indica Group]
          Length = 608

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 119/317 (37%), Gaps = 89/317 (28%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313
           P+  +   +I +    GDY ++R ++  +  + + L+   FNSLM+    D K    +Y 
Sbjct: 248 PDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFET-DYKEVSNIYD 306

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
            MQ+                                         LK DV +YS ++K +
Sbjct: 307 QMQRT---------------------------------------ALKPDVVSYSLLIKAY 327

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
             A+  + AL V E+ML AGV P   +++ LI+A A +GLVE+A  +F+ M +   EP+ 
Sbjct: 328 GKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDL 387

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
                ++ A V A   D A + FR                    RI              
Sbjct: 388 CSYTTMVLAYVNASDMDGAEKFFR--------------------RI-------------- 413

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISW 551
                        K    KP    Y  LMK      +  RV  +   MR  G+ PN   +
Sbjct: 414 -------------KEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIY 460

Query: 552 TILIDACGGSGNVEGAL 568
           T ++D  G + +   A+
Sbjct: 461 TTIMDVHGRNSDFGNAV 477



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 93/206 (45%), Gaps = 20/206 (9%)

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL---------RSQNVTLNIYVF 294
           YD  ++    P++     +I   G      ++ A++E++         +S N+ ++ +  
Sbjct: 305 YDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAI 364

Query: 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           + L+   AH       V+K M++  V  D+ SY  ++ A   A +   A++ +  +K   
Sbjct: 365 SGLVE-EAHT------VFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIK--- 414

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            +  LK +V  Y T++K ++     +  ++V E M   GV PN   ++++++        
Sbjct: 415 -EDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDF 473

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILL 440
             A+  F+EM   G   + +  NILL
Sbjct: 474 GNAVIWFKEMEARGYPADKKAKNILL 499


>gi|15241779|ref|NP_198189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|9502152|gb|AAF88005.1| similar to a large family of Arabidopsis thaliana salt inducible
           protein-like proteins; contains similarity to Pfam
           family PF01535 (Domain of unknown function),
           score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana]
 gi|332006410|gb|AED93793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 42/259 (16%)

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            +YN L+   C AG    A+E+   +K  E    +K +V T +TIV          MA+ 
Sbjct: 407 VTYNCLIDGYCRAGKLETAKEVVSRMKEDE----IKPNVVTVNTIVGGMCRHHGLNMAVV 462

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
              DM   GV  N +T+ +LI+AC +   VE+AM+ +E+ML+AGC P+++    L+    
Sbjct: 463 FFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLC 522

Query: 445 EACQFDRAFRLFR-------SWTLSKTQVALGEDYDGNT-----DRISNMEHKDKQSITN 492
           +  +   A R+         S  L    + +G   D N      + +++ME + K     
Sbjct: 523 QVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGK----- 577

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHIS 550
                              KP + TYN L+       D+  V+ +M +MR  GL P   +
Sbjct: 578 -------------------KPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTT 618

Query: 551 WTILIDACGGSGNVEGALQ 569
           +  +IDA    G ++ AL+
Sbjct: 619 YGAVIDAYCSVGELDEALK 637



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 37/243 (15%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN      +ID     G    ++ +   ++   +  N+   N+++      H L   +  
Sbjct: 404 PNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVF 463

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA---------------- 355
           + +M+K GV  ++ +Y  L+ ACC   N  + + +Y   K LEA                
Sbjct: 464 FMDMEKEGVKGNVVTYMTLIHACCSVSN--VEKAMYWYEKMLEAGCSPDAKIYYALISGL 521

Query: 356 -----------------KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
                            +G   LD+  Y+ ++ +F D    +   ++  DM   G  P++
Sbjct: 522 CQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDS 581

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           IT+++LI+        E    + E+M + G +P       ++ A     + D A +LF+ 
Sbjct: 582 ITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD 641

Query: 459 WTL 461
             L
Sbjct: 642 MGL 644



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 9/208 (4%)

Query: 253 SPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           SP+  I   +I  +C +  D+   R + E L+    +L++  +N L+ +  + ++ +   
Sbjct: 508 SPDAKIYYALISGLCQVRRDHDAIRVV-EKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVY 566

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+  +M+K G   D  +YN L+      G     + +   ++ +   G L   V TY  +
Sbjct: 567 EMLTDMEKEGKKPDSITYNTLI---SFFGKHKDFESVERMMEQMREDG-LDPTVTTYGAV 622

Query: 370 VKVFADAKWWQMALKVKEDM-LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +  +        ALK+ +DM L + V PNT+ ++ LINA +  G   QA+ L EEM    
Sbjct: 623 IDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKM 682

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
             PN +  N L +   E  Q +   +L 
Sbjct: 683 VRPNVETYNALFKCLNEKTQGETLLKLM 710


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 126/288 (43%), Gaps = 33/288 (11%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           ++++  + K+G    + +Y  ++K  C  G+T  A ++   +K +E KG  K DV  Y+T
Sbjct: 161 VKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQL---LKKMEEKGC-KPDVVAYNT 216

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++      +    A+    +M+  G+ PN +T+SS+++   N G + +A  LF++M+   
Sbjct: 217 VIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRN 276

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK------TQVALGEDY------DGNT 476
             PN+    IL+    +      A R+F   T +       T  AL + Y      D   
Sbjct: 277 VMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQ 336

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSS-------------FDKRFSFKPTTTTYNILMK 523
                M  K         N + N H  S             +D+  +  P T TY+ LM+
Sbjct: 337 KLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLT--PDTVTYSTLMQ 394

Query: 524 ACCTDYYR--VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             C        + L  EM + GL P+ I+++IL+D     G+++ A +
Sbjct: 395 GFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFR 442



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 107/218 (49%), Gaps = 14/218 (6%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE- 310
           PN      ++D  G+C  G  +++R ++E +    V  + Y +++LM+   + L+  ++ 
Sbjct: 279 PNTVTFTILVD--GLCKEGMILEARRVFEMMTENGVEPDAYTYSALMD--GYCLQSQMDE 334

Query: 311 ---VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
              ++  M   G    +  YNIL+   C +     A+ +  E+   +    L  D  TYS
Sbjct: 335 AQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRD----LTPDTVTYS 390

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           T+++ F  A   Q+A K+ ++M S G+ P++IT+S L++     G +++A  L + M ++
Sbjct: 391 TLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQES 450

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
             EP+    NIL+Q      + + A  LF +  +   Q
Sbjct: 451 KIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQ 488



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 118/283 (41%), Gaps = 45/283 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY-- 279
           I +   ++   K     +AL+     ++    P++    T+ID   +C D   + A+Y  
Sbjct: 177 ITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVID--SLCKDRRANEAMYFF 234

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
            ++  Q +  N+  ++S+++   N   L     ++K M    VM +  ++ IL+   C  
Sbjct: 235 SEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKE 294

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG---- 393
           G  + A+ ++   + +   GV + D +TYS ++  +        A K+ + M+  G    
Sbjct: 295 GMILEARRVF---EMMTENGV-EPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPS 350

Query: 394 -------------------------------VTPNTITWSSLINACANAGLVEQAMHLFE 422
                                          +TP+T+T+S+L+     AG  + A  LF+
Sbjct: 351 VRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFK 410

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           EM   G  P+S   +ILL    +    D AFRL ++   SK +
Sbjct: 411 EMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIE 453



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/214 (19%), Positives = 101/214 (47%), Gaps = 11/214 (5%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +++ +  ++  +++T +   +++LM     A   +   +++K M   G++ D  +Y+ILL
Sbjct: 369 EAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILL 428

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C  G+     E +  +K ++   + +  +  Y+ +++   +    + A ++  ++  
Sbjct: 429 DGLCKHGH---LDEAFRLLKAMQESKI-EPHICIYNILIQGMCNFGKLEAARELFSNLFV 484

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+ P+ +T++ +I+     GL  +A  +F +M+  GC PNS   N+ +Q  +       
Sbjct: 485 KGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSN 544

Query: 452 AFRLF-----RSWTLSKTQVALGEDYDGNTDRIS 480
           A RL      R ++   +   +  D + N + IS
Sbjct: 545 AVRLIEEMVGRGFSADSSTFQMLLDLESNDEIIS 578



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/243 (18%), Positives = 106/243 (43%), Gaps = 6/243 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   V    K+  ++ A R ++   ++   P+ Y    ++D   +     +++ +++ 
Sbjct: 282 VTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDI 341

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +    ++ V+N L+N    +  L     +   M    +  D  +Y+ L++  C AG 
Sbjct: 342 MVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGR 401

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             +AQ+++   K + + G+L  D  TYS ++           A ++ + M  + + P+  
Sbjct: 402 PQVAQKLF---KEMCSYGLLP-DSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHIC 457

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++ LI    N G +E A  LF  +   G +P+     +++   ++    + A  +FR  
Sbjct: 458 IYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKM 517

Query: 460 TLS 462
            ++
Sbjct: 518 VVN 520


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 135/293 (46%), Gaps = 22/293 (7%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLK----FTLEVYKNMQKLGVMADMA 325
           G++ K   ++  +R +    +I  FN+L+N             +E+   + K G+  D+ 
Sbjct: 278 GNFEKVNEMFNLMRERGCEPDIVSFNTLINAKVKSCATVSGLAIELLDEVGKFGLRPDII 337

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +YN L+ AC    N    +E  G   H+E+    + D++TY+ ++ V+    +   A  +
Sbjct: 338 TYNTLISACSRESNL---KEAIGVFSHMESNRC-QPDLWTYNAMISVYGRCGFALKAEHL 393

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            E + S G +P+ +T++SL+ A +  G  E+   + EEM++ G   +    N ++    +
Sbjct: 394 FEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGK 453

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
             + D A RL+R    S      G + D  T  +  ++   K S     + V +    + 
Sbjct: 454 HGRHDEALRLYRDMKSS------GRNPDAVTYTVL-IDLLGKASKIEEASKVMSEMLDA- 505

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILID 556
                 KPT  TY+ L+ A      RV+A    N MR  G+  +H+++++++D
Sbjct: 506 ----GVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLD 554



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 112/242 (46%), Gaps = 7/242 (2%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R DI+  N  +    ++ +L  A+  +   + +   P+++    +I V G CG  +K+  
Sbjct: 333 RPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEH 392

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E L+S   + +   +NSL+   + +   +   ++ + M K+G   D  +YN ++    
Sbjct: 393 LFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYG 452

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    A  +Y ++K          D  TY+ ++ +   A   + A KV  +ML AGV 
Sbjct: 453 KHGRHDEALRLYRDMK----SSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVK 508

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P   T+S+LI A A  G   +A   F  M ++G + +    +++L   +   +  +A  L
Sbjct: 509 PTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAAL 568

Query: 456 FR 457
           ++
Sbjct: 569 YQ 570



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 26/236 (11%)

Query: 226 NFVREFGKKRDLVS------------------ALRAYDASKKHLSSPNMYICRTIIDVCG 267
           N +RE G + D+VS                  A+   D   K    P++    T+I  C 
Sbjct: 288 NLMRERGCEPDIVSFNTLINAKVKSCATVSGLAIELLDEVGKFGLRPDIITYNTLISACS 347

Query: 268 ICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL---GVMADM 324
              +  ++  ++  + S     +++ +N++++V      F L+     +KL   G   D 
Sbjct: 348 RESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGR-CGFALKAEHLFEKLKSNGFSPDA 406

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            +YN LL A    GNT   ++I  E+     K     D  TY+TI+ ++        AL+
Sbjct: 407 VTYNSLLYAFSKEGNTEKVRDISEEM----VKMGFGKDEMTYNTIIHMYGKHGRHDEALR 462

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           +  DM S+G  P+ +T++ LI+    A  +E+A  +  EML AG +P     + L+
Sbjct: 463 LYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALI 518



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/230 (19%), Positives = 104/230 (45%), Gaps = 6/230 (2%)

Query: 231  FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
            F +  +L    + Y+  K     P M++ R +I +          R +  ++       +
Sbjct: 904  FAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPD 963

Query: 291  IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            + +FNS++ +  +  + +    +Y+ +Q  G+  D  +YN L+   C          +  
Sbjct: 964  LQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMH 1023

Query: 349  EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            ++K L     L+    TY +++  F+  + +  A ++ E++ S G   +   +  ++   
Sbjct: 1024 KMKSLG----LEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMY 1079

Query: 409  ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
              +G  ++A +L E M +AG EPN+   ++L+ +  ++ Q + A R+ ++
Sbjct: 1080 RTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKN 1129



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +++ +M+  GV      Y  ++   C  G    AQ +   + H E   ++ LD  T   I
Sbjct: 738 QLFSDMRFNGVEPSECLYQSMVSVYCRIGFPETAQHL---LYHAEKNDII-LDNVTVHII 793

Query: 370 --VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
             ++ +   K WQ A  + E++       +   W++LI+A A +G  E+A  +F  M++ 
Sbjct: 794 DIIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMRE 853

Query: 428 GCEPNSQCCNILLQACV 444
           G  P  +  N LLQA +
Sbjct: 854 GPSPTVESVNGLLQALI 870



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 139/334 (41%), Gaps = 33/334 (9%)

Query: 262  IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLG 319
            II+  G    +  + +I E+LR +   ++  V+N+L++  A     +    ++  M + G
Sbjct: 795  IIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMREG 854

Query: 320  VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
                + S N LL+A  + G      E+Y  ++ L+    LK+   +   +++ FA A   
Sbjct: 855  PSPTVESVNGLLQALIVDGRL---SELYVVIQELQDMD-LKISKSSILLMLEAFAQAGNL 910

Query: 380  QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
                KV   M +AG  P    +  +I        V     +  EM +AG +P+ Q  N +
Sbjct: 911  FEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSV 970

Query: 440  LQACVEACQFDRA---FRLFRSWTLS---KTQVALGEDY--DGNTDRISNMEHKDKQSIT 491
            L+      +F      +++ +   L+   +T   L   Y  D   +   ++ HK K S+ 
Sbjct: 971  LKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMK-SLG 1029

Query: 492  NTPN----------FVPNSHYSSFDKRF------SFKPTTTTYNILMKACCT--DYYRVK 533
              P           F     Y   ++ F       +K   + Y+++MK   T  D+ + +
Sbjct: 1030 LEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAE 1089

Query: 534  ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             L+  M+  G+ PN  +  +L+ + G SG  E A
Sbjct: 1090 NLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEA 1123



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 90/200 (45%), Gaps = 12/200 (6%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           TII + G  G + ++  +Y D++S     +   +  L+++   A  ++   +V   M   
Sbjct: 446 TIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDA 505

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           GV   + +Y+ L+ A    G  V A+E +  ++    +  +K D   YS ++  F     
Sbjct: 506 GVKPTLHTYSALICAYAKVGRRVEAEETFNRMR----ESGIKADHLAYSVMLDFFLRFNE 561

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM-HLFEEMLQAGCEPNSQCCN 437
            + A  + ++M+ AG TP+T  +  ++ A     LV + M  + E ++Q   E  S   +
Sbjct: 562 IKKAAALYQEMIEAGFTPDTGLYEVMLPA-----LVRENMGDVIERVVQDTKELGSMNPH 616

Query: 438 ILLQACVEACQFDRAFRLFR 457
            +    V+   +D   ++ +
Sbjct: 617 DISSVLVKGGCYDHGAKMLK 636



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 75/159 (47%), Gaps = 6/159 (3%)

Query: 272  YMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNI 329
            Y ++  ++E+LRS    L+   ++ +M +   + D +    + + M++ G+  + A+ ++
Sbjct: 1050 YDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHL 1109

Query: 330  LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
            L+ +   +G    A  I   +K+L   G + LD   YS+++  +      +  ++   +M
Sbjct: 1110 LMVSYGKSGQPEEADRI---LKNLRTMGAV-LDTLPYSSVIDAYLKKGDAKAGIEKLTEM 1165

Query: 390  LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
              A + P+   W+  I A + +G V  A +L   +   G
Sbjct: 1166 KEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNALQAVG 1204



 Score = 42.7 bits (99), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 80/178 (44%), Gaps = 6/178 (3%)

Query: 254  PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
            P++ I  +++ +     ++     IY+ ++   +  +   +N+L+ +    H  +  L +
Sbjct: 962  PDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSL 1021

Query: 312  YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
               M+ LG+     +Y  ++ A         A+E++ E   L + G  KLD   Y  ++K
Sbjct: 1022 MHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEE---LRSNGY-KLDRSFYHLMMK 1077

Query: 372  VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
            ++  +   Q A  + E M  AG+ PNT T   L+ +   +G  E+A  + + +   G 
Sbjct: 1078 MYRTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGA 1135


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 125/254 (49%), Gaps = 9/254 (3%)

Query: 211 IRYACIVPRADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269
           +R + I P  DI+  N  +    ++ +L  A++ Y+    H   P+++    +I V G C
Sbjct: 260 VRRSGIQP--DIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRC 317

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASY 327
           G   ++  +++DL S+    +   +NSL+   A +  +    E+ ++M K+G   D  +Y
Sbjct: 318 GMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTY 377

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N ++      G   LA ++Y ++K L  +     D  TY+ ++     A   + A +V  
Sbjct: 378 NTIIHMYGKRGQHDLAFQLYSDMK-LSGRSP---DAVTYTVLIDSLGKANMIKEAAEVMS 433

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +ML+A V P   T+S+LI   A AG   +A   F+ ML++G +P+    +++L   +   
Sbjct: 434 EMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFN 493

Query: 448 QFDRAFRLFRSWTL 461
           +  +A +L++   L
Sbjct: 494 ESGKAMKLYQEMVL 507



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 135/296 (45%), Gaps = 39/296 (13%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           D M+SR    DL S N  +N  + +  M  N       +E+   +++ G+  D+ +YN L
Sbjct: 221 DLMRSRGCEPDLVSFNTLINARLKSGTMVTN-----LAIELLNEVRRSGIQPDIITYNTL 275

Query: 331 LKACCLAGNTVLAQEIYGE-VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           + AC    N   A ++Y + V H       + D++TY+ ++ V+      + A ++ +D+
Sbjct: 276 ISACSRESNLEEAVKVYNDMVAHR-----CQPDLWTYNAMISVYGRCGMSREAGRLFKDL 330

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
            S G  P+ +T++SL+ A A  G V++   + E+M++ G   +    N ++    +  Q 
Sbjct: 331 ESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQH 390

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRI-------SNMEHKDKQSITNTPNFVPNSHY 502
           D AF+L+    LS      G   D  T  +       +NM  +  + ++   N       
Sbjct: 391 DLAFQLYSDMKLS------GRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLN------- 437

Query: 503 SSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILID 556
                    KPT  T++ L+        RV+A    + M   G+ P+H+++++++D
Sbjct: 438 ------ARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLD 487



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 108/261 (41%), Gaps = 34/261 (13%)

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           A    LA EI+   +      V       Y+ ++ V+A    +    ++ + M S G  P
Sbjct: 176 ANQEALAVEIFARAEAASGNTVQ-----VYNAMMGVYARTGRFTKVQELLDLMRSRGCEP 230

Query: 397 NTITWSSLINACANAG--LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           + +++++LINA   +G  +   A+ L  E+ ++G +P+    N L+ AC      + A +
Sbjct: 231 DLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVK 290

Query: 455 LFRSWTLSKTQVALGEDYDG--------NTDRISNMEHKDKQSITNTPNFVP-NSHYSSF 505
           ++      + Q  L   Y+            R +    KD +S    P+ V  NS   +F
Sbjct: 291 VYNDMVAHRCQPDLWT-YNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAF 349

Query: 506 DK---------------RFSFKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSPNH 548
            +               +  F     TYN  I M      +     L ++M+  G SP+ 
Sbjct: 350 AREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDA 409

Query: 549 ISWTILIDACGGSGNVEGALQ 569
           +++T+LID+ G +  ++ A +
Sbjct: 410 VTYTVLIDSLGKANMIKEAAE 430


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 108/269 (40%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+ + + G  A +  +NIL+   C  G+  LAQ ++  +     K  L+  V 
Sbjct: 123 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAI----TKWGLRPSVV 178

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  ML++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 179 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEM 238

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  ++                            
Sbjct: 239 LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY---------------------------- 270

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  +   L++EM   
Sbjct: 271 --KQMLSQ-----------------SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVK 311

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ I++T LID C   G+++ A + R
Sbjct: 312 GLKPDKITYTTLIDGCCKEGDLDSAFEHR 340



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 148/357 (41%), Gaps = 33/357 (9%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DI +F   +  + +   L  A+  Y  +++H     +  CR +++       +     
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWG 128

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YE++       ++Y FN LM+      D++    V+  + K G+   + SYN L+    
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 189 RLGDL---DEGFRLKSAMLASGV-QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 244

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++LI+     G V+ AM ++++ML     P+    N L+    +     +A  L
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 304

Query: 456 FRSWT---LSKTQVALGEDYDG---NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
               +   L   ++      DG     D  S  EH+ +    N                 
Sbjct: 305 IDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQEN----------------- 347

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
             +     Y  L+   C +   V A  ++ EM +VGL P+  ++T++I+     G+V
Sbjct: 348 -IRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 403



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 130/347 (37%), Gaps = 55/347 (15%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           C  P +   F   +  F K  D+  A   +DA  K    P++    T+++     GD  +
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
              +   + +  V  ++Y ++ L+N    + K     E++  M   G++ +  ++  L+ 
Sbjct: 196 GFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLID 255

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G   LA EIY                                       + MLS 
Sbjct: 256 GHCKNGRVDLAMEIY---------------------------------------KQMLSQ 276

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            ++P+ IT+++LI      G ++QA HL +EM   G +P+      L+  C +    D A
Sbjct: 277 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSA 336

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
           F   +       ++    D    T  IS +  + +         V              K
Sbjct: 337 FEHRKRMIQENIRL----DEVAYTALISGLCQEGRS--------VDAEKMLREMLSVGLK 384

Query: 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           P   TY +++   C   D ++   L+ EM+  G  P+ +++ +L++ 
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 100/189 (52%), Gaps = 6/189 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P+ Y   T+I  C     Y ++ A++ED++S     +   +N+L++V   +  +K  +EV
Sbjct: 102 PDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEV 161

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M+  G    + +YN L+ A   A + +L + +  E+K+   +  +KLDVFTY+ ++ 
Sbjct: 162 LREMEVNGCSPSIVTYNSLISA--YARDGLLEEAM--ELKNQMVERGIKLDVFTYTAMLS 217

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F      + A++V E+M +AG  PN  T+++LI    N G   + M +FEE+    C P
Sbjct: 218 GFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVP 277

Query: 432 NSQCCNILL 440
           +    N LL
Sbjct: 278 DIVTWNTLL 286



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 152/337 (45%), Gaps = 32/337 (9%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLE 310
           P++Y   ++I  C   G Y ++  +++ +  +     +  +N ++NV             
Sbjct: 31  PDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKITG 90

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +++ M+  G++ D  +YN L+  CC  G+  L +E     + +++ G +  D  TY+T++
Sbjct: 91  LFEGMKNAGILPDEYTYNTLI-TCCRRGS--LYEEAAAVFEDMKSMGFVP-DKVTYNTLL 146

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            V+  ++  + A++V  +M   G +P+ +T++SLI+A A  GL+E+AM L  +M++ G +
Sbjct: 147 DVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIK 206

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE-----DYDGNTDRISNMEH- 484
            +      +L   V   + + A R+F     +  +  +          GN  + + M   
Sbjct: 207 LDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKV 266

Query: 485 -KDKQSITNTPNFVP-NSHYSSFD---------------KRFSFKPTTTTYNILMKAC-- 525
            ++ +     P+ V  N+  + F                KR  F P   TYN L+ A   
Sbjct: 267 FEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSR 326

Query: 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
           C  + +  A+   M   G++P+  ++  ++ A    G
Sbjct: 327 CGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGG 363



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 161/360 (44%), Gaps = 46/360 (12%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +   FVR  GK     SA+R ++  +     PN+     +I + G  G + +   ++E++
Sbjct: 215 MLSGFVRT-GKDE---SAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEI 270

Query: 283 RSQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +      +I  +N+L+ V   N  D + +  V+K M+++G + +  +YN L+ A    G+
Sbjct: 271 KICCCVPDIVTWNTLLAVFGQNGMDSEVS-GVFKEMKRVGFVPERDTYNTLISAYSRCGS 329

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  +Y   K +   G+   D+ TY+ ++   A    W+ + K+  +M      PN +
Sbjct: 330 FDQAMAMY---KRMLDTGITP-DLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNEL 385

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS----------QCCNILLQACVEACQF 449
           T  SL++A AN   + + + L EE+     EP++            C++LL+A       
Sbjct: 386 THCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEA------- 438

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
           +RAF   +    S          D +T       +  +Q +T T   +      +F K  
Sbjct: 439 ERAFLELKRKGFSP---------DLSTLNAMIAIYGRRQMVTKTNEIL------NFMKES 483

Query: 510 SFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            F P+  TYN L  M +   ++ R + ++ E+   G+ P+ IS+  +I A   +G ++ A
Sbjct: 484 GFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEA 543



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/240 (18%), Positives = 116/240 (48%), Gaps = 6/240 (2%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           ++  C+ +  +   +++   L   +     +  P+  + +T++ V   C   +++   + 
Sbjct: 384 ELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFL 443

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           +L+ +  + ++   N+++ +      +  T E+   M++ G    +A+YN L+     + 
Sbjct: 444 ELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSE 503

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           N   ++E+   +K + AKG+ K D+ +Y+T++  +      + A  +  +M  +G+ P+ 
Sbjct: 504 NFERSEEV---LKEILAKGI-KPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDV 559

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           IT+++ + + A   + E+A+ +   M++ GC+PN    N ++    +  + D A +   S
Sbjct: 560 ITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFISS 619



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 5/145 (3%)

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
           N+ K G   D+ +Y  L+ AC   G    A  ++   K +E +G  K  + TY+ I+ V+
Sbjct: 23  NLHKDGFEPDVYAYTSLITACVSNGRYREAVMVF---KKMEEEGC-KPTLITYNVILNVY 78

Query: 374 ADAKW-WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                 W     + E M +AG+ P+  T+++LI  C    L E+A  +FE+M   G  P+
Sbjct: 79  GKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPD 138

Query: 433 SQCCNILLQACVEACQFDRAFRLFR 457
               N LL    ++ +   A  + R
Sbjct: 139 KVTYNTLLDVYGKSRRIKEAIEVLR 163


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 165/399 (41%), Gaps = 74/399 (18%)

Query: 74  YADMASKLAKDGRLEE-----FAMIVESVVVSE------------GNVSKFASMLSLEMV 116
           Y+ + S LA  GR+++       M+V+ VV +E            G+V+  A + S  M 
Sbjct: 317 YSTVVSALADAGRVDDAVALVHEMVVDGVVAAEAFNPVLGAMLRTGDVTGAAKLFSF-MQ 375

Query: 117 ASGIVKSIRE-----------GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRL 165
             G   S              GR    +GV++++    V P  +  G+    L   C RL
Sbjct: 376 LKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLV-RCGRL 434

Query: 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225
            D+          +V+EE                           +R   +VP  + +F 
Sbjct: 435 EDA---------CKVIEE---------------------------MRSKGLVPN-EFVFS 457

Query: 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285
             +  F K  ++  A R +D        PN+ +   +ID    CG   ++  ++ ++   
Sbjct: 458 PVITGFCKLGEVDRASRVWDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEA 517

Query: 286 NVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
               NI  ++S++       D    L  +++M ++G   +  +Y++L+   C  G +  A
Sbjct: 518 KCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDA 577

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PNTITWS 402
             ++   KH+  +G +  D   Y++++K F  +      L++  DML+ G T P+ I ++
Sbjct: 578 MMVW---KHMLGRGCVP-DTIAYTSMIKGFCVSGMVDAGLRLFYDMLARGDTHPDVICYN 633

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
            L++    A  + +AM L  +ML   C+P++  CN  L+
Sbjct: 634 VLLDGLLRAKDLPRAMDLLNQMLDQACDPDTVTCNTFLR 672



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 6/205 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P +     ++D    CG    +  + E++RS+ +  N +VF+ ++       ++     V
Sbjct: 416 PGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRV 475

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M   G+  ++  Y+ ++      G    A+ ++ E+  +EAK V   ++ TYS++V+
Sbjct: 476 WDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREM--IEAKCVP--NIMTYSSMVR 531

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +        AL   EDML  G TPN +T+S LIN   N G  + AM +++ ML  GC P
Sbjct: 532 GYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVP 591

Query: 432 NSQCCNILLQACVEACQFDRAFRLF 456
           ++     +++    +   D   RLF
Sbjct: 592 DTIAYTSMIKGFCVSGMVDAGLRLF 616



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 130/327 (39%), Gaps = 35/327 (10%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P+ +   T++      G    + A+  ++    V +    FN ++   +   D+    ++
Sbjct: 312 PDKFTYSTVVSALADAGRVDDAVALVHEMVVDGV-VAAEAFNPVLGAMLRTGDVTGAAKL 370

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  MQ  G     A+YN+LL    L G    A+   G ++ +E   V+   V TY  +V 
Sbjct: 371 FSFMQLKGCAPSAATYNVLLHGLLLCGR---AKAAMGVMRRMERAEVVP-GVMTYGAVVD 426

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                   + A KV E+M S G+ PN   +S +I      G V++A  +++ M+ AG +P
Sbjct: 427 GLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKP 486

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSK------TQVALGEDYDGNTDRISNMEH- 484
           N    + ++       +   A  LFR    +K      T  ++   Y    D    +   
Sbjct: 487 NVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFW 546

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTV 542
           +D   I  TPN V                   TY++L+   C       A+M    M   
Sbjct: 547 EDMLRIGCTPNAV-------------------TYSVLINGLCNVGRSKDAMMVWKHMLGR 587

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
           G  P+ I++T +I     SG V+  L+
Sbjct: 588 GCVPDTIAYTSMIKGFCVSGMVDAGLR 614


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 101/189 (53%), Gaps = 6/189 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P+ Y   T+I  C     + ++ A+++D++S     +   +N+L++V   +   K  +EV
Sbjct: 102 PDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEV 161

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M+  G    + +YN L+ A   A + +L + +  E+K+   +G + LDVFTY+T++ 
Sbjct: 162 LREMEVNGCSPSIVTYNSLISA--YARDGLLKEAM--ELKNQMVEGGINLDVFTYTTLLS 217

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F  A   + A++V  +M +AG  PN  T+++LI    N G   + M +FEE+  + C P
Sbjct: 218 GFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVP 277

Query: 432 NSQCCNILL 440
           +    N LL
Sbjct: 278 DIVTWNTLL 286



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 159/360 (44%), Gaps = 46/360 (12%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           L   FVR  GK     SA+R +   +     PN+     +I + G  G + +   ++E++
Sbjct: 215 LLSGFVRA-GKDE---SAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEI 270

Query: 283 RSQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++     +I  +N+L+ V   N  D + +  V+K M++ G + +  +YN L+ A    G+
Sbjct: 271 KNSCCVPDIVTWNTLLAVFGQNGMDSEVS-GVFKEMKRAGFVPERDTYNTLISAYSRCGS 329

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A +IY   + LEA   +  D+ TY+ ++   A    W+ + K+  +M      PN +
Sbjct: 330 FDQAMDIYK--RMLEAG--ITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNEL 385

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS----------QCCNILLQACVEACQF 449
           T+ SL++A AN   + + + L EE+     EP++            C++L++A V   + 
Sbjct: 386 TYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLEL 445

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
            R                 G   D +T       +  +Q  T T   +      +F    
Sbjct: 446 KRK----------------GFSPDLSTLNAMLSIYGRRQMFTKTNEIL------NFMNES 483

Query: 510 SFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            F P+  TYN L  M +   ++ R + ++ E+   G+ P+ IS+  +I A   +G ++ A
Sbjct: 484 GFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEA 543



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 151/337 (44%), Gaps = 34/337 (10%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEV 311
           ++Y   ++I  C   G Y ++  +++ +  +     +  +N ++NV             +
Sbjct: 32  DVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIKGL 91

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M+  GV+ D  +YN L+  CC  G+  L +E     K +++ G +  D  TY+ ++ 
Sbjct: 92  FEGMKNAGVLPDEYTYNTLI-TCCRRGS--LHEEAAAVFKDMKSMGFVP-DKVTYNALLD 147

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           V+  ++  + A++V  +M   G +P+ +T++SLI+A A  GL+++AM L  +M++ G   
Sbjct: 148 VYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINL 207

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE-----DYDGNTDRISNMEHKD 486
           +      LL   V A + + A R+F     +  +  +          GN  + + M  K 
Sbjct: 208 DVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEM-MKV 266

Query: 487 KQSITNT---PNFVP-NSHYSSFD---------------KRFSFKPTTTTYNILMKAC-- 525
            + I N+   P+ V  N+  + F                KR  F P   TYN L+ A   
Sbjct: 267 FEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSR 326

Query: 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
           C  + +   +   M   G++P+  ++  ++ A    G
Sbjct: 327 CGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGG 363



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/240 (18%), Positives = 114/240 (47%), Gaps = 6/240 (2%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           ++ +C+ +  +   +++   L   +     +  P+  + +T++ V   C   +++   + 
Sbjct: 384 ELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFL 443

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAG 338
           +L+ +  + ++   N+++++      FT   E+   M + G    +A+YN L+     + 
Sbjct: 444 ELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSE 503

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           N   ++E+   +K + AKG+ K D  +Y+T++  +      + A ++  +M  +G+ P+ 
Sbjct: 504 NFERSEEV---LKEILAKGI-KPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDV 559

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           IT+++ + + A   + E A+ +   M++ GC+PN    N ++    +    D A     S
Sbjct: 560 ITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAIMFISS 619



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 5/145 (3%)

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
           ++ K G   D+ +Y  L+ AC   G    A  ++   K +E +G  K  + TY+ I+ V+
Sbjct: 23  DLHKDGFGLDVYAYTSLITACVSNGRYREAVMVF---KKMEEEGC-KPTLITYNVILNVY 78

Query: 374 ADAKW-WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                 W     + E M +AGV P+  T+++LI  C    L E+A  +F++M   G  P+
Sbjct: 79  GKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPD 138

Query: 433 SQCCNILLQACVEACQFDRAFRLFR 457
               N LL    ++ +   A  + R
Sbjct: 139 KVTYNALLDVYGKSRRTKEAMEVLR 163


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 134/320 (41%), Gaps = 63/320 (19%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLK 306
           +P++Y     I   G+C  G    +  ++E++  + +  N  V  +L  ++AH    D+ 
Sbjct: 181 APDVYTYGAFIQ--GLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTL--IDAHCKEGDVT 236

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             LE+   M   GV AD+ +YN L+   C   +   A +I  E++    K  LK D  TY
Sbjct: 237 AGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMR----KDGLKPDKVTY 292

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++           A+++K++M   GV  + +T+++LI+  + AG    A  +  EM++
Sbjct: 293 TTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMME 352

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
           AG +P++    +++ A  +       F+                        +  M++K 
Sbjct: 353 AGLQPDNTTYTMVIDAFCKNGDVKTGFK-----------------------HLKEMQNKG 389

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGL 544
           K                         P   TYN++M   C+         L+N M  +G+
Sbjct: 390 KN------------------------PGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGV 425

Query: 545 SPNHISWTILIDACGGSGNV 564
            PN I++ IL+D     G V
Sbjct: 426 CPNDITYNILLDGHCKHGKV 445



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 102/263 (38%), Gaps = 55/263 (20%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y ++   GV  +   +N+L++    +G    A+ ++ E+     +GV +  V T++T++ 
Sbjct: 102 YLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLR---RGV-QPTVVTFNTLMS 157

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               A     A  ++  M  AG+ P+  T+ + I      G ++ AM +FEEM + G  P
Sbjct: 158 GMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNP 217

Query: 432 NSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           N+     L+ A C E    D    L   W ++   V                        
Sbjct: 218 NTVVLTTLIDAHCKEG---DVTAGLELRWEMATRGV------------------------ 250

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNH 548
                                K     YN L+   C   D      ++ EMR  GL P+ 
Sbjct: 251 ---------------------KADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDK 289

Query: 549 ISWTILIDACGGSGNVEGALQCR 571
           +++T LID C   G ++ A++ +
Sbjct: 290 VTYTTLIDGCCKEGELDTAMEMK 312



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 19/211 (9%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           +AD++  N  V  F + RD+ +A    +  +K    P+     T+ID C   G+   +  
Sbjct: 251 KADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAME 310

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--------VNAHDLKFTLEVYKNMQKLGVMADMASYNI 329
           + +++  + V L+   + +L++        V+A        +   M + G+  D  +Y +
Sbjct: 311 MKQEMSDEGVALDDVTYTALISGLSKAGRSVDAE------RILCEMMEAGLQPDNTTYTM 364

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           ++ A C  G+    +  +  +K ++ KG     + TY+ ++  F      + A  +   M
Sbjct: 365 VIDAFCKNGDV---KTGFKHLKEMQNKGK-NPGIVTYNVVMNGFCSLGQMKNADMLLNAM 420

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHL 420
           L+ GV PN IT++ L++     G V     L
Sbjct: 421 LNIGVCPNDITYNILLDGHCKHGKVRDTEEL 451


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 140/324 (43%), Gaps = 56/324 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNAHDLKF-TLE 310
           +PN Y   T+I      G   ++  +++++ ++  V     ++N+L+       K  T  
Sbjct: 552 APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL 611

Query: 311 VYKN-MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +Y++ M + GV   +A+YN+L+ A  + G      E Y  V+ +  KG L  DVFTY+ +
Sbjct: 612 LYRDRMVERGVAMTVATYNLLVHALFMDGR---GTEAYELVEEMGGKG-LAPDVFTYNIL 667

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + AL++ E+M   GV    +T+++LI A +  G V++   LF+E ++ G 
Sbjct: 668 INGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGI 727

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            P+    N L+ +   +   DRAF +            +GE           ME K    
Sbjct: 728 RPDLVLYNALINSHSTSGNIDRAFEI------------MGE-----------MEKK---- 760

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN 547
                                  P   TYN LM+  C        + L++EM   G+ P+
Sbjct: 761 --------------------RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPD 800

Query: 548 HISWTILIDACGGSGNVEGALQCR 571
            +++  LI      G+V+ AL+ R
Sbjct: 801 LVTYNTLISGYSMKGDVKDALRIR 824



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 126/302 (41%), Gaps = 61/302 (20%)

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +  S  +Y  ++S ++ ++    + L++       F L  + +M +L +     ++NI+L
Sbjct: 438 HATSLRLYSRMKSLSLPISTASLHPLLSALPSAPAFAL--FADMFRLRLPLCTTTFNIML 495

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           +  C AG    A E+  ++    A         TY+T++  F      Q AL +  +M  
Sbjct: 496 RHLCSAGKPARALELLRQMPRPNA--------VTYNTVIAGFCSRGRVQAALDIMREMRE 547

Query: 392 -AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPNSQCCNILLQACVEACQF 449
             G+ PN  T+ ++I+     G V++A+ +F+EML  G  +P +   N L+    +  + 
Sbjct: 548 RGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKL 607

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
           D A  L+R   + +  VA+                                         
Sbjct: 608 DTAL-LYRDRMVERG-VAM----------------------------------------- 624

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
               T  TYN+L+ A   D    +A  L+ EM   GL+P+  ++ ILI+     GNV+ A
Sbjct: 625 ----TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKA 680

Query: 568 LQ 569
           L+
Sbjct: 681 LE 682



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/175 (17%), Positives = 78/175 (44%), Gaps = 41/175 (23%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327
           G   ++  ++++   + +  ++ ++N+L+N ++   ++    E+   M+K  +  D  +Y
Sbjct: 710 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 769

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N L++  CL G    A+++  E+     +G+ + D+ TY+T++  ++     + AL+++ 
Sbjct: 770 NTLMRGLCLLGRVDEARKLIDEMTE---RGI-QPDLVTYNTLISGYSMKGDVKDALRIRN 825

Query: 388 DMLSA-----------------------------------GVTPNTITWSSLINA 407
           +M++                                    G+TP+  T+ SLI  
Sbjct: 826 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEG 880


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 134/320 (41%), Gaps = 63/320 (19%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLK 306
           +P++Y     I   G+C  G    +  ++E++  + +  N  V  +L  ++AH    D+ 
Sbjct: 309 APDVYTYGAFIQ--GLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTL--IDAHCKEGDVT 364

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             LE+   M   GV AD+ +YN L+   C   +   A +I  E++    K  LK D  TY
Sbjct: 365 AGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMR----KDGLKPDKVTY 420

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++           A+++K++M   GV  + +T+++LI+  + AG    A  +  EM++
Sbjct: 421 TTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMME 480

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
           AG +P++    +++ A  +       F+                        +  M++K 
Sbjct: 481 AGLQPDNTTYTMVIDAFCKNGDVKTGFK-----------------------HLKEMQNKG 517

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGL 544
           K                         P   TYN++M   C+         L+N M  +G+
Sbjct: 518 KN------------------------PGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGV 553

Query: 545 SPNHISWTILIDACGGSGNV 564
            PN I++ IL+D     G V
Sbjct: 554 CPNDITYNILLDGHCKHGKV 573



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 102/263 (38%), Gaps = 55/263 (20%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y ++   GV  +   +N+L++    +G    A+ ++ E+     +GV +  V T++T++ 
Sbjct: 230 YLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLR---RGV-QPTVVTFNTLMS 285

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               A     A  ++  M  AG+ P+  T+ + I      G ++ AM +FEEM + G  P
Sbjct: 286 GMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNP 345

Query: 432 NSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           N+     L+ A C E    D    L   W ++   V                        
Sbjct: 346 NTVVLTTLIDAHCKEG---DVTAGLELRWEMATRGV------------------------ 378

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNH 548
                                K     YN L+   C   D      ++ EMR  GL P+ 
Sbjct: 379 ---------------------KADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDK 417

Query: 549 ISWTILIDACGGSGNVEGALQCR 571
           +++T LID C   G ++ A++ +
Sbjct: 418 VTYTTLIDGCCKEGELDTAMEMK 440



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 19/211 (9%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           +AD++  N  V  F + RD+ +A    +  +K    P+     T+ID C   G+   +  
Sbjct: 379 KADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAME 438

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--------VNAHDLKFTLEVYKNMQKLGVMADMASYNI 329
           + +++  + V L+   + +L++        V+A        +   M + G+  D  +Y +
Sbjct: 439 MKQEMSDEGVALDDVTYTALISGLSKAGRSVDAE------RILCEMMEAGLQPDNTTYTM 492

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           ++ A C  G+    +  +  +K ++ KG     + TY+ ++  F      + A  +   M
Sbjct: 493 VIDAFCKNGDV---KTGFKHLKEMQNKGK-NPGIVTYNVVMNGFCSLGQMKNADMLLNAM 548

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHL 420
           L+ GV PN IT++ L++     G V     L
Sbjct: 549 LNIGVCPNDITYNILLDGHCKHGKVRDTEEL 579


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 122/274 (44%), Gaps = 18/274 (6%)

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           V A  L+   E ++ +++ GV   + + N LL      G   LA EIYGEV     +G +
Sbjct: 198 VQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEV----VRGGI 253

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           +L+V+T + +V      + ++  +    DM   GV  + +T+++LINA    GLVE+A  
Sbjct: 254 ELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQ 313

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           L       G EP     N +L    +  ++DRA    +   +   Q+ L  +       +
Sbjct: 314 LLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRA----KDVLIEMLQLGLTPNAATYNTLL 369

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN-- 537
             +  +D        N +          R    P   +++ L+     + +  +ALM+  
Sbjct: 370 VEICRRD--------NILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFR 421

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           EM   G+ P+++ +TILID    +G +  AL+ R
Sbjct: 422 EMERSGIVPDNVIYTILIDGFCRNGALSDALKMR 455



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 117/272 (43%), Gaps = 38/272 (13%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V   M +LG+  + A+YN LL   C   N + AQEI+ E+     +GVL  D+ ++S++
Sbjct: 348 DVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSR---RGVLP-DLVSFSSL 403

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           + V A       AL    +M  +G+ P+ + ++ LI+     G +  A+ + +EML  GC
Sbjct: 404 IGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGC 463

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWT--------LSKTQVALGEDYDGNTDRISN 481
             +    N  L    +   F  A  LF             + T +  G   DGN D+  N
Sbjct: 464 FMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALN 523

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCT--DYYRVKALMN 537
           +                      F+   R + KP   TYN L+   C   +  R K L +
Sbjct: 524 L----------------------FEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWD 561

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +M    + P+HIS+  +++    SG +  AL 
Sbjct: 562 DMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/353 (19%), Positives = 159/353 (45%), Gaps = 26/353 (7%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID-VC--GICGDYMKSRAIYE 280
           F + +    +   L  AL  +   ++    P+  I   +ID  C  G   D +K R   +
Sbjct: 400 FSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMR---D 456

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLE--VYKNMQKLGVMADMASYNILLKACCLAG 338
           ++ ++   +++  +N+ +N       F     ++  M + G++ D  ++  L++  C  G
Sbjct: 457 EMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDG 516

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           N   A  ++  +     +  LK D  TY+T++  F  A     A ++ +DM+   + P+ 
Sbjct: 517 NMDKALNLFEAM----VRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDH 572

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           I++ +++N   ++GL+ +A++L ++ML+ G  PN   CN L++    +    +A+  + S
Sbjct: 573 ISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYE-YLS 631

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
             +S   +     Y+   D      + +K  I            +  +KR   +    TY
Sbjct: 632 KMISNGIIPDSFSYNTLIDGYLKEANLEKAFIL----------INEMEKR-GLQFNIITY 680

Query: 519 NILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           N+++   C +      + ++ +M  +G++P+  +++ LI+      N++ A +
Sbjct: 681 NLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFR 733



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 140/353 (39%), Gaps = 32/353 (9%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            VR + + + L     A+   ++   S ++  C  ++      G    +  IY ++    
Sbjct: 193 LVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGG 252

Query: 287 VTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           + LN+Y  N ++N    D KF   +    +M+  GV AD+ +YN L+ A C  G   L +
Sbjct: 253 IELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREG---LVE 309

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           E +  +    ++G ++  + TY+ I+        +  A  V  +ML  G+TPN  T+++L
Sbjct: 310 EAFQLLNSFSSRG-MEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTL 368

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK- 463
           +        + +A  +F+EM + G  P+    + L+          +A   FR    S  
Sbjct: 369 LVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGI 428

Query: 464 -----TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
                    L + +  N      ++ +D+                    R  F     TY
Sbjct: 429 VPDNVIYTILIDGFCRNGALSDALKMRDEML-----------------ARGCFM-DVVTY 470

Query: 519 NILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           N  +   C    +     L NEM   G+ P+  ++T LI      GN++ AL 
Sbjct: 471 NTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALN 523



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 111/247 (44%), Gaps = 39/247 (15%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           F   +R + K  ++  AL  ++A  +    P+     T+ID  G C  G+  +++ +++D
Sbjct: 505 FTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLID--GFCKAGEMGRAKELWDD 562

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +++  +   + +++N   ++  L   L +   M + G+  ++ + N L+K  C +G+
Sbjct: 563 MIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD 622

Query: 340 TVLAQE--------------------IYGEVKH------------LEAKGVLKLDVFTYS 367
              A E                    I G +K             +E +G L+ ++ TY+
Sbjct: 623 MPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRG-LQFNIITYN 681

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            I+  F      Q A +V   M+  G+ P+  T+SSLIN   +   +++A    +EMLQ 
Sbjct: 682 LILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQR 741

Query: 428 GCEPNSQ 434
           G  P+ +
Sbjct: 742 GLVPDDR 748


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 144/328 (43%), Gaps = 39/328 (11%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P++ +   +ID     G   K+  + + +  + +  N+  +N L+N    +  +K  + V
Sbjct: 218 PDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGV 277

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            K M + GV  D+ +YN L+K   L+    + + ++   + +  K ++K +V T++++++
Sbjct: 278 LKKMSEKGVAPDVVTYNTLIKG--LSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQ 335

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
              D    + A +V+  M   G   N +T++ LI        V +AM L +EM   G EP
Sbjct: 336 GLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEP 395

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ----------VALGEDYDGNTDRISN 481
           +S   +IL++   +  Q DRA  L  +      +          VA+ E   G  +R  N
Sbjct: 396 DSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE--QGMMERARN 453

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEM 539
           +                   ++  D  F        Y+ ++   C   D    K L+  +
Sbjct: 454 L-------------------FNEMDNNFPLD--VVAYSTMIHGACKAGDLKTAKELLKSI 492

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
              GL+P+ ++++I+I+    SG++E A
Sbjct: 493 VDEGLTPDAVTYSIVINMFAKSGDMEAA 520



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 130/304 (42%), Gaps = 40/304 (13%)

Query: 268 ICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMAD 323
           +C D +  +A+     +RS  V  ++  + +L+    +A ++   +E+   M + G+  +
Sbjct: 125 LCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPN 184

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           +  Y+ LL+  C +G      +++ E+     KG+ + DV  Y+ ++         + A 
Sbjct: 185 VVVYSSLLQGYCKSGRWEDVGKVFVEMSE---KGI-EPDVVMYTGLIDSLCKVGKAKKAH 240

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
            V + M+  G+ PN +T++ LIN     G V++A+ + ++M + G  P+    N L++  
Sbjct: 241 GVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300

Query: 444 VEACQFDRAFRLFRSWTLSK-----TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
            +  + D A  L       K       V       G  D I  M                
Sbjct: 301 SDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCD-IGRMRQ-------------- 345

Query: 499 NSHYSSFDKRFSFKPTT-----TTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISW 551
                +F  R   + T       TYN+L+      +   KA  LM+EM ++GL P+  ++
Sbjct: 346 -----AFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTY 400

Query: 552 TILI 555
           +ILI
Sbjct: 401 SILI 404



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 25/240 (10%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D  SYN +L A C  G+   A  +      LE     + +  +Y+ +++     +    A
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALL-RAMSLEPHPACRPNAVSYTVLMRALCADRLADQA 134

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           + +   M SAGV  + +T+ +LI    +A  V++A+ L  EM ++G EPN    + LLQ 
Sbjct: 135 VGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQG 194

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNMEHKDKQSITNTPNFVPN 499
             ++ +++   ++F    +  ++  +  D   Y G  D +  +    K            
Sbjct: 195 YCKSGRWEDVGKVF----VEMSEKGIEPDVVMYTGLIDSLCKVGKAKKA----------- 239

Query: 500 SHYSSFDK--RFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
             +   D   R   +P   TYN+L+   C +    +A+  + +M   G++P+ +++  LI
Sbjct: 240 --HGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLI 297



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 108/243 (44%), Gaps = 36/243 (14%)

Query: 249 KHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHD 304
           K++  PN+    ++I   G+C  G   ++  +   +      +N+  +N L+   +  H 
Sbjct: 320 KNIVKPNVVTFNSVIQ--GLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHK 377

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ-------------EIYGEVK 351
           ++  +E+   M  LG+  D  +Y+IL+K  C       A+             E++  + 
Sbjct: 378 VRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIP 437

Query: 352 HLEA---KGVLK--------------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
            L A   +G+++              LDV  YST++     A   + A ++ + ++  G+
Sbjct: 438 LLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGL 497

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           TP+ +T+S +IN  A +G +E A  + ++M  +G  P+    + L+Q      + ++   
Sbjct: 498 TPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLE 557

Query: 455 LFR 457
           L R
Sbjct: 558 LIR 560



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+ +Y+ ++   C AG+   A+E+   +K +  +G L  D  TYS ++ +FA +   + A
Sbjct: 465 DVVAYSTMIHGACKAGDLKTAKEL---LKSIVDEG-LTPDAVTYSIVINMFAKSGDMEAA 520

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
             V + M ++G  P+   + SLI   +  G + + + L  EM+      +S+  + L
Sbjct: 521 NGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTL 577


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 137/329 (41%), Gaps = 37/329 (11%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMN--VNAHDLKFTL 309
           +PN     T++      G+   +  +   +R + N   N+  FNS++N    A  ++   
Sbjct: 184 APNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGAR 243

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V+  M + G+  D+ SYN LL   C  G    +  ++ E+     +G++  DV T++++
Sbjct: 244 KVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQ---RGLVP-DVVTFTSL 299

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +     A   + A+ +   M   G+  N +T+++LI+     G ++ A+   EEM + G 
Sbjct: 300 IHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGI 359

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ--------VALGEDYDGNTDRISN 481
           +P+  C N L+    +  + D A  L R     + +        +  G    GN D    
Sbjct: 360 QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQ 419

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEM 539
           +  K  +                        P   TY+ L++  C +     A  L   M
Sbjct: 420 LNQKMLKK--------------------GVLPDAITYSSLIRGLCEEKRLNDACELFENM 459

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGAL 568
             +G+ P+  ++T LID     GNVE AL
Sbjct: 460 LQLGVQPDEFTYTTLIDGHCKEGNVEKAL 488



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 6/204 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++    ++I      G+  ++ A+   +R + + +N   F +L++       L   L  
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M+K G+   +  YN L+   C  G   LA+E+   ++ +EAK V K DV TYSTI+ 
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLAREL---IREMEAKRV-KPDVVTYSTIIS 406

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +        A ++ + ML  GV P+ IT+SSLI        +  A  LFE MLQ G +P
Sbjct: 407 GYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQP 466

Query: 432 NSQCCNILLQACVEACQFDRAFRL 455
           +      L+    +    ++A  L
Sbjct: 467 DEFTYTTLIDGHCKEGNVEKALSL 490



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 19/287 (6%)

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E++R   +  ++  +N+L+N       +    E+ + M+   V  D+ +Y+ ++   C  
Sbjct: 352 EEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKV 411

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           GN   A ++    + +  KGVL  D  TYS++++   + K    A ++ E+ML  GV P+
Sbjct: 412 GNLDSAFQLN---QKMLKKGVLP-DAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 467

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR-LF 456
             T+++LI+     G VE+A+ L +EM++ G  P+    ++L+    ++ +   A R LF
Sbjct: 468 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 527

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF------S 510
           + +   +  V     YD      S  E K   ++     F         DK +      +
Sbjct: 528 KLY--HEDPVPDNIKYDALMLCCSKAEFKSVVALLK--GFCMKGLMKEADKVYQSMLDRN 583

Query: 511 FKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
           +K   + Y+IL+   C      KAL    +M   G SPN  S   L+
Sbjct: 584 WKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLV 630



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 101/258 (39%), Gaps = 54/258 (20%)

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
           +M + GV  ++ +YNIL++A C  G     +E  G V  +   G    +  TY+T+V  F
Sbjct: 142 SMLRHGVAPNVYTYNILVRALCARGRL---EEAVGVVGDMRGAGCAP-NAVTYNTLVAAF 197

Query: 374 ADAKWWQMALKVKEDMLSAG-VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
             A     A +V   M   G   PN +T++S++N    AG +E A  +F+EM++ G  P+
Sbjct: 198 CRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPD 257

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
               N LL    +      +  +F   T                                
Sbjct: 258 VVSYNTLLSGYCKVGCLHESLAVFSEMT-------------------------------- 285

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHIS 550
                          +    P   T+  L+ A C   +  +  AL+ +MR  GL  N ++
Sbjct: 286 ---------------QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 330

Query: 551 WTILIDACGGSGNVEGAL 568
           +T LID     G ++ AL
Sbjct: 331 FTALIDGFCKKGFLDDAL 348



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 24/213 (11%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V  Y+ ++   +DA     A +    ML  GV PN  T++ L+ A    G +E+A+ +  
Sbjct: 118 VPAYNAVLLALSDASLPS-ARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVG 176

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFR---LFRSWTLSKTQVALGEDYDGNTDRI 479
           +M  AGC PN+   N L+ A   A + D A R   L R    +K  +           + 
Sbjct: 177 DMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKA 236

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCTD--YYRVKAL 535
             ME   K                 FD+  R    P   +YN L+   C     +   A+
Sbjct: 237 GRMEGARK----------------VFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAV 280

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            +EM   GL P+ +++T LI A   +GN+E A+
Sbjct: 281 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAV 313



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 112/257 (43%), Gaps = 36/257 (14%)

Query: 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247
           V  LD  F++ Q  + K           ++P A I + + +R   +++ L  A   ++  
Sbjct: 411 VGNLDSAFQLNQKMLKKG----------VLPDA-ITYSSLIRGLCEEKRLNDACELFENM 459

Query: 248 KKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN------ 299
            +    P+ +   T+ID  G C  G+  K+ ++++++  + V  ++  ++ L+N      
Sbjct: 460 LQLGVQPDEFTYTTLID--GHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSA 517

Query: 300 --VNAHDLKFTL----EVYKNMQKLGVM-----ADMASYNILLKACCLAGNTVLAQEIYG 348
               AH L F L     V  N++   +M     A+  S   LLK  C+ G    A ++Y 
Sbjct: 518 RTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQ 577

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            +         KLD   YS ++         + AL   + ML +G +PN+ +  SL+   
Sbjct: 578 SMLDRN----WKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGL 633

Query: 409 ANAGLVEQAMHLFEEML 425
              G+V +A +  +++L
Sbjct: 634 FEEGMVVEADNAIQDLL 650


>gi|298708358|emb|CBJ48421.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 327

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 8/194 (4%)

Query: 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLG- 319
           +   G CG + ++ A  + +RS+ V  ++Y FNS ++    A   K  L +   M++ G 
Sbjct: 36  LSALGKCGRWKEALATLDRMRSKGVPPDVYSFNSAISACGRAAKWKQALALLSEMEREGS 95

Query: 320 -VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
            V  D+ SYN  + A    G    A  +   +K    +G L  DVF++S+ +     A  
Sbjct: 96  DVPPDLFSYNGAINAVAKDGRWEQALSLLMGIK---TRG-LSPDVFSFSSAMSACDRAGE 151

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           WQ AL+V + ML   V P+ +++ + I+ACA  G  +QA+ L  ++   G E N+     
Sbjct: 152 WQRALEVMDLMLHHEVEPSIVSYGTAISACARGGRWQQALSLLADIPSRGLEANAHAYGS 211

Query: 439 LLQACVEACQFDRA 452
            + ACV   Q  RA
Sbjct: 212 AIHACVVGGQHRRA 225



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 8/186 (4%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ--NVT 288
            GK      AL   D  +     P++Y   + I  CG    + ++ A+  ++  +  +V 
Sbjct: 39  LGKCGRWKEALATLDRMRSKGVPPDVYSFNSAISACGRAAKWKQALALLSEMEREGSDVP 98

Query: 289 LNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
            +++ +N  +N  A D ++   L +   ++  G+  D+ S++  + AC  AG    A E+
Sbjct: 99  PDLFSYNGAINAVAKDGRWEQALSLLMGIKTRGLSPDVFSFSSAMSACDRAGEWQRALEV 158

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
              + H E    ++  + +Y T +   A    WQ AL +  D+ S G+  N   + S I+
Sbjct: 159 MDLMLHHE----VEPSIVSYGTAISACARGGRWQQALSLLADIPSRGLEANAHAYGSAIH 214

Query: 407 ACANAG 412
           AC   G
Sbjct: 215 ACVVGG 220



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           +LD  TY+  +        W+ AL   + M S GV P+  +++S I+AC  A   +QA+ 
Sbjct: 26  RLDAKTYNVALSALGKCGRWKEALATLDRMRSKGVPPDVYSFNSAISACGRAAKWKQALA 85

Query: 420 LFEEMLQAGCE--PNSQCCNILLQACVEACQFDRAFRLF 456
           L  EM + G +  P+    N  + A  +  ++++A  L 
Sbjct: 86  LLSEMEREGSDVPPDLFSYNGAINAVAKDGRWEQALSLL 124


>gi|298709629|emb|CBJ31438.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 762

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 139/328 (42%), Gaps = 28/328 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P+      +I   G    + +S  + +D+R   V  N + FN+ +     A   +  + +
Sbjct: 325 PDPKTYSAVITASGKAKKWEESLRLLDDMREVGVEPNCHNFNAAIASCGVARQWQRAVGL 384

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M+  G+   ++SYN  + AC  +   V A  + GE++   A GV + +  TY  ++ 
Sbjct: 385 LGEMKGGGLELGLSSYNAAILACATSARGVEASALLGEMR---AAGV-EPNAATYLPVIT 440

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               A  W+ +L    +M + G+ PN+  ++++I AC +A   E+A+ +  EM  AG + 
Sbjct: 441 ACGKAGMWEQSLVHLREMTAQGLAPNSPIYTAVITACGHAKEWEKALEILAEMPAAGVKA 500

Query: 432 NSQCCNILLQACVEACQFDRAFRLFR--------SWTLSKTQVALGE-DYDGNTDRISNM 482
           +    N  L AC  A Q + A  L          S   S  Q A+     +G  D    +
Sbjct: 501 SVYHYNTALDACDRAAQGEAAVVLLHDMDGPPGVSPNPSSYQSAMSACGSEGRVDLALEL 560

Query: 483 EHKDKQSITNTPNFVPNS--HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMR 540
             + K + T  P   P+S  + S+     S  P             ++  + K L+ E R
Sbjct: 561 LEEVKAASTTRPELAPSSKLYASALQACVSSPPDG-----------SNARKAKELLEEAR 609

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGAL 568
             G++ N  S+   I A   +G V+ AL
Sbjct: 610 GAGIALNWRSYNCAIIAAAKAGEVDEAL 637



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 132/334 (39%), Gaps = 41/334 (12%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIY----------EDLRSQNVTLNIYVFNSLMNVNAHD 304
           ++Y  +T I      G + ++  IY           D    N+ L+     SL    A D
Sbjct: 177 DVYCVKTTITALAKSGKWKQALKIYLEMLDALPANSDAPEANLNLDALRDASLACGRAGD 236

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACC----LAGNTVLAQEI---YGEVKHLEAKG 357
            K +L++   M+ + +  +   Y   +++C         T L  E+   YG V  LE   
Sbjct: 237 WKASLKLLDEMRAVAITPESGCYKAAMQSCVRNKQWERATSLIDEMTLTYGMVPDLE--- 293

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
                  TY   +     A  W  A K+   M   G+ P+  T+S++I A   A   E++
Sbjct: 294 -------TYQVAISAAGCASLWPKATKMLRQMRQNGLQPDPKTYSAVITASGKAKKWEES 346

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
           + L ++M + G EPN    N  + +C  A Q+ RA  L            LGE   G  +
Sbjct: 347 LRLLDDMREVGVEPNCHNFNAAIASCGVARQWQRAVGL------------LGEMKGGGLE 394

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL-- 535
              +  +    +   +   V  S      +    +P   TY  ++ AC       ++L  
Sbjct: 395 LGLSSYNAAILACATSARGVEASALLGEMRAAGVEPNAATYLPVITACGKAGMWEQSLVH 454

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           + EM   GL+PN   +T +I ACG +   E AL+
Sbjct: 455 LREMTAQGLAPNSPIYTAVITACGHAKEWEKALE 488



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 140/354 (39%), Gaps = 30/354 (8%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           ++ + +    K R    AL      +     PN Y   + I  CG    + ++  + E  
Sbjct: 33  MYASCISRMAKARRWEEALDILQRMRARGLQPNSYCVSSAIKACGSKKRWREALELLERR 92

Query: 283 R---SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           R    +   ++ Y  ++ +    N+ +    LE+ + ++  G      SY   + AC  +
Sbjct: 93  REDLGEGSPVDEYSLSAAIYACGNSGETGKVLELLEELKVGGKTPHPFSYTAAISACGDS 152

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G      +++ +++    +    +DV+   T +   A +  W+ ALK+  +ML A +  N
Sbjct: 153 GMGDKVMQLFEDMRQARVRTDGFIDVYCVKTTITALAKSGKWKQALKIYLEMLDA-LPAN 211

Query: 398 TITWSSLIN---------ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           +    + +N         AC  AG  + ++ L +EM      P S C    +Q+CV   Q
Sbjct: 212 SDAPEANLNLDALRDASLACGRAGDWKASLKLLDEMRAVAITPESGCYKAAMQSCVRNKQ 271

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
           ++RA  L    TL+   V   E Y            +   S     +  P +       R
Sbjct: 272 WERATSLIDEMTLTYGMVPDLETY------------QVAISAAGCASLWPKATKMLRQMR 319

Query: 509 F-SFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
               +P   TY+ ++ A      +     L+++MR VG+ PN  ++   I +CG
Sbjct: 320 QNGLQPDPKTYSAVITASGKAKKWEESLRLLDDMREVGVEPNCHNFNAAIASCG 373



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 8/198 (4%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +PN  I   +I  CG   ++ K+  I  ++ +  V  ++Y +N+ ++    A   +  + 
Sbjct: 464 APNSPIYTAVITACGHAKEWEKALEILAEMPAAGVKASVYHYNTALDACDRAAQGEAAVV 523

Query: 311 VYKNMQ-KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK-----HLEAKGVLKLDVF 364
           +  +M    GV  + +SY   + AC   G   LA E+  EVK       E     KL   
Sbjct: 524 LLHDMDGPPGVSPNPSSYQSAMSACGSEGRVDLALELLEEVKAASTTRPELAPSSKLYAS 583

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
                V    D    + A ++ E+   AG+  N  +++  I A A AG V++A+    EM
Sbjct: 584 ALQACVSSPPDGSNARKAKELLEEARGAGIALNWRSYNCAIIAAAKAGEVDEALARLAEM 643

Query: 425 LQAGCEPNSQCCNILLQA 442
             AG  PN    + +L A
Sbjct: 644 KDAGLTPNVMSYSWILPA 661



 Score = 45.8 bits (107), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNS--LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K++ + E+ R   + LN   +N   +    A ++   L     M+  G+  ++ SY+ +L
Sbjct: 600 KAKELLEEARGAGIALNWRSYNCAIIAAAKAGEVDEALARLAEMKDAGLTPNVMSYSWIL 659

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            A     +  L +E    V+ ++  G+L+   F YS +V   + A  W+    V EDM++
Sbjct: 660 PALA---SRELWEESLALVEEIKGYGLLRTP-FAYSVVVAAHSAAGRWEEVCGVLEDMIA 715

Query: 392 AGVT 395
           AGV 
Sbjct: 716 AGVA 719



 Score = 42.0 bits (97), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 15/187 (8%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA---------- 302
           SPN    ++ +  CG  G    +  + E++++ + T      +S +  +A          
Sbjct: 535 SPNPSSYQSAMSACGSEGRVDLALELLEEVKAASTTRPELAPSSKLYASALQACVSSPPD 594

Query: 303 -HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
             + +   E+ +  +  G+  +  SYN  + A   AG    A     E+K       L  
Sbjct: 595 GSNARKAKELLEEARGAGIALNWRSYNCAIIAAAKAGEVDEALARLAEMKD----AGLTP 650

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +V +YS I+   A  + W+ +L + E++   G+      +S ++ A + AG  E+   + 
Sbjct: 651 NVMSYSWILPALASRELWEESLALVEEIKGYGLLRTPFAYSVVVAAHSAAGRWEEVCGVL 710

Query: 422 EEMLQAG 428
           E+M+ AG
Sbjct: 711 EDMIAAG 717



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           ++  F Y++ +   A A+ W+ AL + + M + G+ PN+   SS I AC +     +A+ 
Sbjct: 28  RITTFMYASCISRMAKARRWEEALDILQRMRARGLQPNSYCVSSAIKACGSKKRWREALE 87

Query: 420 LFE 422
           L E
Sbjct: 88  LLE 90


>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial; AltName: Full=Protein
           PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
 gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 95/183 (51%), Gaps = 6/183 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           SPN+    T +    + GD  K   + E L       ++  F+ ++N    A ++K   +
Sbjct: 457 SPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFD 516

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            +K M + G+  +  +YNIL+++CC  G+T  + +++ ++K    +  L  D++ Y+  +
Sbjct: 517 CFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMK----ENGLSPDLYAYNATI 572

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           + F   +  + A ++ + ML  G+ P+  T+S+LI A + +G   +A  +F  + + GC 
Sbjct: 573 QSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCV 632

Query: 431 PNS 433
           P+S
Sbjct: 633 PDS 635



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 87/171 (50%), Gaps = 6/171 (3%)

Query: 290 NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           ++Y +N++++    A  ++        MQ  G+  ++ ++N  L    + G+    ++++
Sbjct: 424 SVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDV---KKVH 480

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
           G ++ L   G  K DV T+S I+     AK  + A    ++ML  G+ PN IT++ LI +
Sbjct: 481 GVLEKLLVHG-FKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRS 539

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           C + G  ++++ LF +M + G  P+    N  +Q+  +  +  +A  L ++
Sbjct: 540 CCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKT 590



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 99/252 (39%), Gaps = 53/252 (21%)

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           K M   G+++ + SYN ++   C A     A     E   ++ +G+   ++ T++T +  
Sbjct: 414 KQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTE---MQDRGI-SPNLVTFNTFLSG 469

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           ++     +    V E +L  G  P+ IT+S +IN    A  ++ A   F+EML+ G EPN
Sbjct: 470 YSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPN 529

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
               NIL+++C      DR+ +LF                                    
Sbjct: 530 EITYNILIRSCCSTGDTDRSVKLFAKM--------------------------------- 556

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHIS 550
                         K     P    YN  +++ C      + + L+  M  +GL P++ +
Sbjct: 557 --------------KENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFT 602

Query: 551 WTILIDACGGSG 562
           ++ LI A   SG
Sbjct: 603 YSTLIKALSESG 614



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 66/150 (44%), Gaps = 4/150 (2%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           L  ++E+ K ++  G         +L+ +    G      +++ ++  L  K   +L   
Sbjct: 126 LLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRL--- 182

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            Y+ ++     +    +A    + M S G  P+  T++ LI+     G+V++A+ L ++M
Sbjct: 183 -YNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQM 241

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            Q G  PN     IL+   + A + D A +
Sbjct: 242 EQEGNRPNVFTYTILIDGFLIAGRVDEALK 271



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 7/146 (4%)

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           K+  +V+  +  LG+      YN ++ A   + +  LA   Y + + + + G  K D FT
Sbjct: 162 KYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLA---YLKFQQMRSDGC-KPDRFT 217

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+ ++           A+++ + M   G  PN  T++ LI+    AG V++A+   E M 
Sbjct: 218 YNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMR 277

Query: 426 QAGCEPNSQCCNILLQA---CVEACQ 448
                PN       +     C+  C+
Sbjct: 278 VRKLNPNEATIRTFVHGIFRCLPPCK 303



 Score = 42.0 bits (97), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 86/207 (41%), Gaps = 35/207 (16%)

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G  P++ T+++ ++       + +   +F+  +  G +P      +L+QA + A +F   
Sbjct: 350 GYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEG 409

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTD------RISN--MEHKDKQSITNTPNFVP-NSHYS 503
            R  +   +     ++   Y+   D      RI N  M   + Q    +PN V  N+  S
Sbjct: 410 DRYLKQMGVDGLLSSV-YSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLS 468

Query: 504 SFDKR---------------FSFKPTTTTYNILMKACCTDYYRVKALMN------EMRTV 542
            +  R                 FKP   T+++++   C    R K + +      EM   
Sbjct: 469 GYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLC----RAKEIKDAFDCFKEMLEW 524

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
           G+ PN I++ ILI +C  +G+ + +++
Sbjct: 525 GIEPNEITYNILIRSCCSTGDTDRSVK 551


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 122/274 (44%), Gaps = 18/274 (6%)

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           V A  L+   E ++ +++ GV   + + N LL      G   LA EIYGEV     +G +
Sbjct: 198 VQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEV----VRGGI 253

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           +L+V+T + +V      + ++  +    DM   GV  + +T+++LINA    GLVE+A  
Sbjct: 254 ELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQ 313

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           L       G EP     N +L    +  ++DRA    +   +   Q+ L  +       +
Sbjct: 314 LLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRA----KDVLIEMLQLGLTPNAATYNTLL 369

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN-- 537
             +  +D        N +          R    P   +++ L+     + +  +ALM+  
Sbjct: 370 VEICRRD--------NILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFR 421

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           EM   G+ P+++ +TILID    +G +  AL+ R
Sbjct: 422 EMERSGIVPDNVIYTILIDGFCRNGALSDALKMR 455



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 117/272 (43%), Gaps = 38/272 (13%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V   M +LG+  + A+YN LL   C   N + AQEI+ E+     +GVL  D+ ++S++
Sbjct: 348 DVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSR---RGVLP-DLVSFSSL 403

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           + V A       AL    +M  +G+ P+ + ++ LI+     G +  A+ + +EML  GC
Sbjct: 404 IGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGC 463

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWT--------LSKTQVALGEDYDGNTDRISN 481
             +    N  L    +   F  A  LF             + T +  G   DGN D+  N
Sbjct: 464 FMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALN 523

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCT--DYYRVKALMN 537
           +                      F+   R + KP   TYN L+   C   +  R K L +
Sbjct: 524 L----------------------FEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWD 561

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +M    + P+HIS+  +++    SG +  AL 
Sbjct: 562 DMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/353 (19%), Positives = 159/353 (45%), Gaps = 26/353 (7%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID-VC--GICGDYMKSRAIYE 280
           F + +    +   L  AL  +   ++    P+  I   +ID  C  G   D +K R   +
Sbjct: 400 FSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMR---D 456

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLE--VYKNMQKLGVMADMASYNILLKACCLAG 338
           ++ ++   +++  +N+ +N       F     ++  M + G++ D  ++  L++  C  G
Sbjct: 457 EMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDG 516

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           N   A  ++  +     +  LK D  TY+T++  F  A     A ++ +DM+   + P+ 
Sbjct: 517 NMDKALNLFEAM----VRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDH 572

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           I++ +++N   ++GL+ +A++L ++ML+ G  PN   CN L++    +    +A+  + S
Sbjct: 573 ISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYE-YLS 631

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
             +S   +     Y+   D      + +K  I            +  +KR   +    TY
Sbjct: 632 KMISNGIIPDSFSYNTLIDGYLKEANLEKAFIL----------INEMEKR-GLQFNIITY 680

Query: 519 NILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           N+++   C +      + ++ +M  +G++P+  +++ LI+      N++ A +
Sbjct: 681 NLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFR 733



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 140/353 (39%), Gaps = 32/353 (9%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            VR + + + L     A+   ++   S ++  C  ++      G    +  IY ++    
Sbjct: 193 LVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGG 252

Query: 287 VTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           + LN+Y  N ++N    D KF   +    +M+  GV AD+ +YN L+ A C  G   L +
Sbjct: 253 IELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREG---LVE 309

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           E +  +    ++G ++  + TY+ I+        +  A  V  +ML  G+TPN  T+++L
Sbjct: 310 EAFQLLNSFSSRG-MEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTL 368

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK- 463
           +        + +A  +F+EM + G  P+    + L+          +A   FR    S  
Sbjct: 369 LVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGI 428

Query: 464 -----TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
                    L + +  N      ++ +D+                    R  F     TY
Sbjct: 429 VPDNVIYTILIDGFCRNGALSDALKMRDEML-----------------ARGCFM-DVVTY 470

Query: 519 NILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           N  +   C    +     L NEM   G+ P+  ++T LI      GN++ AL 
Sbjct: 471 NTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALN 523



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 111/247 (44%), Gaps = 39/247 (15%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           F   +R + K  ++  AL  ++A  +    P+     T+ID  G C  G+  +++ +++D
Sbjct: 505 FTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLID--GFCKAGEMGRAKELWDD 562

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +++  +   + +++N   ++  L   L +   M + G+  ++ + N L+K  C +G+
Sbjct: 563 MIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD 622

Query: 340 TVLAQE--------------------IYGEVKH------------LEAKGVLKLDVFTYS 367
              A E                    I G +K             +E +G L+ ++ TY+
Sbjct: 623 MPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRG-LQFNIITYN 681

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            I+  F      Q A +V   M+  G+ P+  T+SSLIN   +   +++A    +EMLQ 
Sbjct: 682 LILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQR 741

Query: 428 GCEPNSQ 434
           G  P+ +
Sbjct: 742 GLVPDDR 748


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 128/297 (43%), Gaps = 35/297 (11%)

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           R QNVTLN  +   L +    D    + V++ M +LG   D+ SYN L+K  C+   +  
Sbjct: 126 RVQNVTLN-QLIKGLCDGKRTDDAMDM-VFRRMPELGYTPDVFSYNALIKGLCVEKKSQE 183

Query: 343 AQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
           A E+   + H+ A G      +V +YSTI+  F        A  + ++M+  G  P+ +T
Sbjct: 184 ALEL---LLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVT 240

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +SSLI+    A  + +A  + + M   G  PN++  NI+++      Q + A RL +  +
Sbjct: 241 YSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMS 300

Query: 461 LSKTQ-----VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK--RFSFKP 513
            S  Q       L   Y     R +                      S FD   R   KP
Sbjct: 301 GSGLQPDVVTYILLIQYYCKIGRCAEAR-------------------SVFDSMVRKGQKP 341

Query: 514 TTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            +T Y+IL+    T      V+ L++ M   G+   H ++ ILI A    G V+ A+
Sbjct: 342 NSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAM 398



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 115/250 (46%), Gaps = 10/250 (4%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           +IL C + +     +    A+ A+   +++   P++    T+I +    G    +   + 
Sbjct: 382 NILICAYAKHGAVDK----AMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFN 437

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            + S+ ++ NI  F SL++   +  + K   E+   M   G+  D    N ++   C  G
Sbjct: 438 QMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEG 497

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
             V AQ+ +  V H+   GV K +V +Y+T++  +        ++K  + M+S G+ P++
Sbjct: 498 RVVEAQDFFDMVIHI---GV-KPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDS 553

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            T+++L+N     G VE A+ L+ EM +   +  +   NI+L    +A +   A  L+  
Sbjct: 554 WTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMK 613

Query: 459 WTLSKTQVAL 468
                TQ+ +
Sbjct: 614 MVDRGTQLRI 623



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 133/318 (41%), Gaps = 24/318 (7%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN+    TIID     G+  K+  +++++  Q    ++  ++SL++    A  +     
Sbjct: 200 SPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEA 259

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + ++M   GVM +  +YNI+++  C  G     +E    +K +   G L+ DV TY  ++
Sbjct: 260 ILQHMFDKGVMPNTRTYNIMIRGYCSLGQL---EEAVRLLKKMSGSG-LQPDVVTYILLI 315

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           + +        A  V + M+  G  PN+  +  L++  A  G +     L + M++ G  
Sbjct: 316 QYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIP 375

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
              +  NIL+ A  +    D+A   F              +   N  R   + +     I
Sbjct: 376 FEHRAFNILICAYAKHGAVDKAMTAF-------------TEMRQNGLRPDVVSYSTVIHI 422

Query: 491 TNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
                 V ++ Y  F++  S    P   ++  L+   C+  ++ +V+ L  EM   G+ P
Sbjct: 423 LCKIGRVEDAVY-HFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHP 481

Query: 547 NHISWTILIDACGGSGNV 564
           + I    ++D     G V
Sbjct: 482 DAIFMNTIMDNLCKEGRV 499



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 114/241 (47%), Gaps = 7/241 (2%)

Query: 221 DILFCNFVRE-FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           D +F N + +   K+  +V A   +D        PN+    T+ID     G   +S   +
Sbjct: 482 DAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQF 541

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           + + S  +  + + +N+L+N       ++  L +Y+ M +  V     + NI+L     A
Sbjct: 542 DRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQA 601

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G  V A+E+Y  +K ++    L+++  TY+T++    +      AL++ ED+ S     +
Sbjct: 602 GRIVAARELY--MKMVDRGTQLRIE--TYNTVLGGLCENSCVDEALRMFEDLRSKEFELD 657

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             T++ +INA    G +++A  LF  M+  G  P+    ++++++ +E    + +  LF 
Sbjct: 658 VWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFL 717

Query: 458 S 458
           S
Sbjct: 718 S 718



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 4/143 (2%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+Y  M   G    + +YN +L   C       A  ++ +++  E     +LDV+T++ +
Sbjct: 609 ELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKE----FELDVWTFNIV 664

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A  +   M+  G  P+ IT+S +I +    GL+E++  LF  M + GC
Sbjct: 665 INALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGC 724

Query: 430 EPNSQCCNILLQACVEACQFDRA 452
             +S   N++++  +E     RA
Sbjct: 725 AADSHMLNVIIRRLLEKGDVRRA 747



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 120/327 (36%), Gaps = 96/327 (29%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNA---------HDLKFTLEVYKNMQKLGV---MADMA 325
           ++++L  Q    +++ FNS++ V A         H     + ++  M + GV    A+  
Sbjct: 36  LFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMARSGVNMMAANRY 95

Query: 326 SYNILLKACCLAG--------------------NTVLAQEIYGEVKHLEAKGVLKL---- 361
              IL++  C  G                    N  L Q I G          + +    
Sbjct: 96  IIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLCDGKRTDDAMDMVFRR 155

Query: 362 --------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAG---VTPNTITWSSLINACAN 410
                   DVF+Y+ ++K     K  Q AL++   M + G    +PN +++S++I+    
Sbjct: 156 MPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFK 215

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G V++A  LF+EM+  G  P+    + L+    +A   ++A  + +             
Sbjct: 216 EGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHM----------- 264

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--D 528
                                             FDK     P T TYNI+++  C+   
Sbjct: 265 ----------------------------------FDK--GVMPNTRTYNIMIRGYCSLGQ 288

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILI 555
                 L+ +M   GL P+ +++ +LI
Sbjct: 289 LEEAVRLLKKMSGSGLQPDVVTYILLI 315



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 90/210 (42%), Gaps = 6/210 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P+     TI+D     G  ++++  ++ +    V  N+  +N+L++      K   +++ 
Sbjct: 481 PDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQ 540

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M  +G+  D  +YN LL      G    A  +Y E+   +    +K    T + I+ 
Sbjct: 541 FDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKD----VKFCAITSNIILH 596

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               A     A ++   M+  G      T+++++        V++A+ +FE++     E 
Sbjct: 597 GLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFEL 656

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           +    NI++ A ++  + D A  LF +  L
Sbjct: 657 DVWTFNIVINALLKVGRIDEAKSLFSAMVL 686


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 176/443 (39%), Gaps = 75/443 (16%)

Query: 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE-----FGKKRDLVSALRAYDASKKH 250
           + +Q  V   D+  AI     + R  +    FV         K++ +  A + +D     
Sbjct: 187 KAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDR 246

Query: 251 LSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLK 306
             +PN     T+ID  G C  G   ++  I E ++ +NV   I  FNSL+N    A  ++
Sbjct: 247 RVAPNRITYNTLID--GYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMME 304

Query: 307 FTLEVYKNMQKLGVMADMASY-----------------------------------NILL 331
               V + M+  G + D  +Y                                   +ILL
Sbjct: 305 EAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILL 364

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            A C  GN   A+E+   +K     G+  + VF ++TIV  +        A    E M +
Sbjct: 365 NALCKEGNMEKAEEV---LKKFLENGLAPVGVF-FNTIVNGYCQVGDINKAYTTIEKMEA 420

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+ PN +T++SL+        +E+A    ++M++ G  PN +  N L+     +C FDR
Sbjct: 421 VGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDR 480

Query: 452 AFRLFRSWT---LSKTQVALG-----EDYDGNTDR----ISNMEHKDKQSITNTPNFVPN 499
            F++        L    ++ G        D N       + +M H+         N + +
Sbjct: 481 CFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLID 540

Query: 500 SH---------YSSFDKRFSFK--PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
                      +  FD+  + +  PT  TYNIL+   C     ++A  L +E+   GLS 
Sbjct: 541 GSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSF 600

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
           + I++  LI     +GNV+ AL+
Sbjct: 601 DVITYNSLISGYSSAGNVQKALE 623



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 106/465 (22%), Positives = 191/465 (41%), Gaps = 43/465 (9%)

Query: 96  SVVVSEGNVSKFASMLSLEMVASGIVKSI-REGRIDCVVGVLKKLNELGVAPLELFDGSG 154
           S+ +SE  V K   +L  +   S ++ ++ +EG ++    VLKK  E G+AP+ +F  + 
Sbjct: 341 SITLSEEAVRKGVQIL--DYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNT- 397

Query: 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214
             ++   CQ     G++      +E +E   L    +     + + C  K   N+     
Sbjct: 398 --IVNGYCQ----VGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMK---NMEEAEK 448

Query: 215 CI--------VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266
           CI        +P  +  +   +  +G+        +  +  +K    PN+     +I+  
Sbjct: 449 CIKKMVEKGVLPNVET-YNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCL 507

Query: 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADM 324
               + +++  I  D+  + V  N  ++N L++ +  A  LK     +  M    ++  +
Sbjct: 508 CKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTL 567

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            +YNIL+   C  G  + A+ +  E+     KG L  DV TY++++  ++ A   Q AL+
Sbjct: 568 VTYNILINGLCKKGKVMEAENLASEITR---KG-LSFDVITYNSLISGYSSAGNVQKALE 623

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           + E M  +G+ P   T+  LI  C   GLV     +++EMLQ    P+    N L+   V
Sbjct: 624 LYETMKKSGIKPTLNTYHRLIAGCGKEGLV-LVEKIYQEMLQMNLVPDRVIYNALIHCYV 682

Query: 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
           E     +A       +L     A G   D  T     + H  +  +    N V +     
Sbjct: 683 EHGDVQKA------CSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDM---- 732

Query: 505 FDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN 547
             K     P T TY+IL+   C   D+        EM   G +P+
Sbjct: 733 --KIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPS 775



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 115/284 (40%), Gaps = 40/284 (14%)

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           V   DLK  +E+   M++ GV   +  YN+++   C       A++++ E+  L+ +  +
Sbjct: 193 VKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEM--LDRR--V 248

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             +  TY+T++  +      + A  ++E M    V P  IT++SL+N    A ++E+A  
Sbjct: 249 APNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQR 308

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY------- 472
           + EEM   G  P+      L    ++    D +  L         Q+    DY       
Sbjct: 309 VLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQIL---DYTCSILLN 365

Query: 473 ----DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT- 527
               +GN ++   +  K          F+ N             P    +N ++   C  
Sbjct: 366 ALCKEGNMEKAEEVLKK----------FLEN----------GLAPVGVFFNTIVNGYCQV 405

Query: 528 -DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
            D  +    + +M  VGL PNH+++  L+       N+E A +C
Sbjct: 406 GDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKC 449


>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 825

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 171/417 (41%), Gaps = 71/417 (17%)

Query: 215 CIVPRADILFCNFVRE-FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GD 271
           C VP   ++F N + + + KK DL  A RA +  K     P +     +I+  G C  G+
Sbjct: 235 CCVPH--VVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALIN--GFCKAGE 290

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL-----EVYKNMQKLGVMADMAS 326
           +     +  ++ ++ + +N+ VFN++++    + K+ L     E+ + M ++G   D+ +
Sbjct: 291 FEAVDQLLTEMAARGLNMNVKVFNNVIDA---EYKYGLVTEAAEMLRRMAEMGCGPDITT 347

Query: 327 YNILLKACCLAGNTVLAQEIYGEVK-----------------------HLEAKGVL---- 359
           YNI++   C  G    A E+  + K                       +++A G+L    
Sbjct: 348 YNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFRIA 407

Query: 360 ----KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
               K D+ +Y   +     A    +AL V+E M+  GV P+   ++ L++     G + 
Sbjct: 408 EIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIP 467

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-------------TLS 462
               L  EML    +P+      L+   +   + D A ++F+                + 
Sbjct: 468 AMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMI 527

Query: 463 KTQVALGEDYDGNT--DRISNMEHKDKQSITNT--PNFVPNSHYSSFDKRFS------FK 512
           K     G+  D  +  + ++++ H   +   +T    +V     SS  K F       FK
Sbjct: 528 KGFCKFGKMTDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFK 587

Query: 513 PTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           P   TY  L+   C   D  R + + + M++  L PN +++T L+     +G  E A
Sbjct: 588 PNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKAGKPERA 644



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 35/215 (16%)

Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           I + G+C  G     + +  ++  +NV  ++YVF +L++  +   +L   ++++K + + 
Sbjct: 455 ILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRK 514

Query: 319 GVMADMASYNILLKACCLAG------------NTV--------LAQEIYGEVKHLEAKGV 358
           GV   +  YN ++K  C  G            N+V         +  I G VK  +    
Sbjct: 515 GVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSA 574

Query: 359 LKL-----------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
           LK+           +V TY++++  F        A KV   M S  + PN +T+++L+  
Sbjct: 575 LKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGG 634

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
              AG  E+A  +FE ML  GC PN    + L+  
Sbjct: 635 FFKAGKPERATSIFELMLMNGCLPNDATFHYLING 669



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 119/296 (40%), Gaps = 64/296 (21%)

Query: 127 GRIDCVVGVLKKLNELGVAPLE-----LFDG-------SGFKLLKNECQRLLDSGEVEMF 174
           G ID  + V +K+ E GV P       L  G          KLL +E   +LD   V+  
Sbjct: 429 GEIDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSE---MLDR-NVQPD 484

Query: 175 VGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234
           V +   L +  +   ELDE  +I ++ + K      + Y  ++      FC    +FGK 
Sbjct: 485 VYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKG----FC----KFGKM 536

Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
            D +S L   + S  H  +P+ Y   T+ID       Y+K                    
Sbjct: 537 TDALSCLNEMN-SVHH--APDEYTYSTVID------GYVKQ------------------- 568

Query: 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
                   HD+   L+++  M K     ++ +Y  L+   C   + + A++++  +K  +
Sbjct: 569 --------HDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFD 620

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
               L  +V TY+T+V  F  A   + A  + E ML  G  PN  T+  LIN   N
Sbjct: 621 ----LVPNVVTYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLINGLTN 672



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 11/212 (5%)

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
           LD   +S+++K+ A  + +     V E+M +  + P    +S+LI A A +G +++A+ L
Sbjct: 93  LDGVAHSSLLKLLASYRVFPEIELVLENMKAQHLKPTREAFSALILAYAESGSLDRALQL 152

Query: 421 FEEMLQA-GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           F  + +   C P     N+LL   V++ + D A +L+    + +T    G   D  T  I
Sbjct: 153 FHTVREMHNCFPTFVASNLLLNGLVKSGKVDVALQLYDK--MLQTDDGTGAVVDNYTTSI 210

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMN 537
                   + + N                    P    YN+++   C   D       +N
Sbjct: 211 M------VKGLCNLGKIEEGRRLIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQCATRALN 264

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           E++  G+ P   ++  LI+    +G  E   Q
Sbjct: 265 ELKMKGVLPTVETYGALINGFCKAGEFEAVDQ 296


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 158/376 (42%), Gaps = 56/376 (14%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           KK D V+AL      +     P+  I   +I VC   G  +++  +  ++ S    +N+ 
Sbjct: 271 KKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVV 330

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           V  +LM       DL   LE++  M + G+  +  +Y ++++ CC  GN   A EIY ++
Sbjct: 331 VATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQM 390

Query: 351 KHLEA-----------KGVLKL-------------------DVFTYSTIVKVFADAKWWQ 380
           K+ +            +G LK                    +VFTY++++          
Sbjct: 391 KNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVFTYNSLLSWLCKEGKMS 450

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A  + E M+  GV P+ ++++++I      G ++ A  +F EML+ G +PN    ++L+
Sbjct: 451 EACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLM 510

Query: 441 QACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPN 495
               +    + AF L+   R   ++ +        +G     R S  + + K+ +     
Sbjct: 511 DGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQE--- 567

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTI 553
                          F PT  TYN ++     +       A+  EM  +G+SPN  ++T 
Sbjct: 568 --------------GFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTN 613

Query: 554 LIDACGGSGNVEGALQ 569
           LI+    S N++ AL+
Sbjct: 614 LINGFCKSNNMDLALK 629



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 10/226 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           + N +  F K  ++  AL+  D  K      ++ +   +ID  G C  GD + +  +  +
Sbjct: 611 YTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALID--GFCRKGDMVNASQLLSE 668

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           L+   ++ N  V++S+++      +++  L ++K M   G+  D+  Y  L+      G 
Sbjct: 669 LQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGK 728

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            + A E+Y E   + AKG++  D+ TYS ++    +    + A K+ EDM    +TP   
Sbjct: 729 LLFASELYAE---MLAKGIMP-DLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVF 784

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            +++LI      G +++A  L  EML  G  P+    +IL+   V+
Sbjct: 785 IYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVK 830



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 137/321 (42%), Gaps = 30/321 (9%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV--YKNMQKLGVMADMASYNILL 331
           ++R +Y  + S+ V  +    + ++  +  + K       ++  +  GV  D  +Y+I++
Sbjct: 207 EARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVI 266

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           +A C   ++V A    G ++ +  KG +  +V     I       K  + A+KVK +MLS
Sbjct: 267 EAVCKKPDSVAA---LGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLE-AVKVKGEMLS 322

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G   N +  ++L+      G ++ A+ LF++M + G  PN+    ++++ C +    D+
Sbjct: 323 CGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDK 382

Query: 452 AFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHK---DKQSITNTPN-FVPNSHYSS 504
           A+ ++   ++  +S T   +     G     S  E     D+       N F  NS  S 
Sbjct: 383 AYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVFTYNSLLSW 442

Query: 505 FDK---------------RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN 547
             K               R   +P+  +YN ++   C   D      +  EM   GL PN
Sbjct: 443 LCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPN 502

Query: 548 HISWTILIDACGGSGNVEGAL 568
            I++++L+D     G+ E A 
Sbjct: 503 LITYSVLMDGYFKKGDTEYAF 523



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 34/237 (14%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G    + A+Y ++    V+ N++ + +L+N    ++++   L+V   M+  G+  D+  Y
Sbjct: 587 GSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVY 646

Query: 328 NILLKACCLAGNTVLAQEIYGEVK----------------------------HLEAKGV- 358
             L+   C  G+ V A ++  E++                            HL  + + 
Sbjct: 647 CALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMIN 706

Query: 359 --LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
             +  D+  Y+T++           A ++  +ML+ G+ P+ IT+S LI+   N G +E 
Sbjct: 707 EGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLEN 766

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
           A  + E+M +    P     N L+    +      AFRL     L K  V     YD
Sbjct: 767 AQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNE-MLDKGLVPDDTTYD 822



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 91/192 (47%), Gaps = 6/192 (3%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           ++C  +  F +K D+V+A +     ++   SPN  +  ++I       +   +  +++ +
Sbjct: 645 VYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRM 704

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            ++ +  ++ ++ +L++  +    L F  E+Y  M   G+M D+ +Y++L+   C  G  
Sbjct: 705 INEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQL 764

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             AQ+I  ++     +  +   VF Y+T++         Q A ++  +ML  G+ P+  T
Sbjct: 765 ENAQKILEDMD----RKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTT 820

Query: 401 WSSLINACANAG 412
           +  L+N     G
Sbjct: 821 YDILVNGKVKDG 832



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 82/181 (45%), Gaps = 6/181 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN+     ++D     GD   +  +Y+ +R +N+  + +  N ++N    A     + + 
Sbjct: 501 PNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDR 560

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            K + + G +    +YN ++      G+   A  +Y E+     K  +  +VFTY+ ++ 
Sbjct: 561 LKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEM----CKIGVSPNVFTYTNLIN 616

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F  +    +ALKV ++M + G+  +   + +LI+     G +  A  L  E+ + G  P
Sbjct: 617 GFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSP 676

Query: 432 N 432
           N
Sbjct: 677 N 677


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 118/234 (50%), Gaps = 15/234 (6%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           G+  D    LR  D  K+ +  PN+     +ID     G+ +++R +Y+++  ++V  N+
Sbjct: 233 GRWTDAARLLR--DMVKRKID-PNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNV 289

Query: 292 YVFNSLMN-VNAH----DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           + +NSL+N    H    D K+  ++   M   G   D+ +YN L+   C +       ++
Sbjct: 290 FTYNSLINGFCIHGCLGDAKYMFDL---MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 346

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
           + E+ +    G    D FTY+T++  +  A    +A KV   M+  GV+P+ +T++ L++
Sbjct: 347 FCEMTYQGLVG----DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLD 402

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
              N G +E+A+ + E++ ++  + +    NI++Q      +   A+ LFRS T
Sbjct: 403 CLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLT 456



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 133/339 (39%), Gaps = 70/339 (20%)

Query: 294 FNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           F  ++ V A   KF + +Y    M+ LG+  D+ S+ IL+   C      LA  + G++ 
Sbjct: 82  FTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMM 141

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CAN 410
            L      +  + T  +++  F     +Q A+ + + M   G  PN + ++++IN  C N
Sbjct: 142 KLG----FRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKN 197

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ----- 465
             L   A+ +F  M + G   ++   N L+     + ++  A RL R     K       
Sbjct: 198 RDL-NNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIF 256

Query: 466 -VALGEDY--DGNTDRISNMEHKDKQSITNTPN-FVPNSHYSSF-------DKRFSFK-- 512
             AL + +  +GN     N+ +K+    +  PN F  NS  + F       D ++ F   
Sbjct: 257 FTALIDTFVKEGNLLEARNL-YKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM 315

Query: 513 ------PTTTTYNIL-------------MKACCTDYYR---------------------- 531
                 P   TYN L             MK  C   Y+                      
Sbjct: 316 VSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKL 375

Query: 532 --VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
              + + N M   G+SP+ +++ IL+D    +G +E AL
Sbjct: 376 NVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKAL 414



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/214 (19%), Positives = 102/214 (47%), Gaps = 6/214 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I F   +  F K+ +L+ A   Y    +    PN++   ++I+   I G    ++ +++ 
Sbjct: 255 IFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDL 314

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S+    ++  +N+L+     +  ++  ++++  M   G++ D  +YN L+   C AG 
Sbjct: 315 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGK 374

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             +AQ+++  +        +  D+ TY+ ++    +    + AL + ED+  + +  + I
Sbjct: 375 LNVAQKVFNRM----VDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDII 430

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           T++ +I        +++A  LF  + + G +P++
Sbjct: 431 TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDA 464


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 109/269 (40%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     YK + + G  A +  +NIL+   C  G+  +AQ ++  +     K  L+  V 
Sbjct: 123 FKLVWGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI----TKWGLRPSVV 178

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  ML++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 179 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEM 238

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  ++                            
Sbjct: 239 LVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIY---------------------------- 270

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  +V  L++EM   
Sbjct: 271 --KQMLSQ-----------------SLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMK 311

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ I++T LID C   G+++ A + R
Sbjct: 312 GLKPDKITYTTLIDGCCKEGDLDTAFEHR 340



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 126/294 (42%), Gaps = 24/294 (8%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++++++ +    +  ++  +N+LMN  +   DL     +   M   GV  D+ +Y
Sbjct: 156 GDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 215

Query: 328 NILLKACCLAGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           ++L+   C       A E++ E  VK L   GV+      ++T++          +A+++
Sbjct: 216 SVLINGLCKESKMDDANELFDEMLVKGLVPNGVI------FTTLIDGHCKNGRVDLAMEI 269

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + MLS  + P+ IT+++LI      G ++Q  HL +EM   G +P+      L+  C +
Sbjct: 270 YKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCK 329

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
               D AF   +       ++    D    T  IS +  + +         V        
Sbjct: 330 EGDLDTAFEHRKQMIQENIRL----DEVAYTALISGLCQEGRS--------VDAEKMLRE 377

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
                 KP   TY +++   C   D ++   L+ EM+  G  P+ +++ +L++ 
Sbjct: 378 MLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN  I  T+ID  G C  G    +  IY+ + SQ++  ++  +N+L+       DLK   
Sbjct: 245 PNGVIFTTLID--GHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVH 302

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +   M   G+  D  +Y  L+  CC  G+   A E     K +  + + +LD   Y+ +
Sbjct: 303 HLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFE---HRKQMIQENI-RLDEVAYTAL 358

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +ML+ G+ P+  T++ +IN     G V +   L +EM + G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 430 EPNSQCCNILLQA 442
            P+    N+L+  
Sbjct: 419 VPSVVTYNVLMNG 431


>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
 gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
          Length = 877

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 144/335 (42%), Gaps = 32/335 (9%)

Query: 131 CVVGVLKKLNELGVAP--------LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE 182
           C++ V K+L E G AP        + ++   G      E  ++++S  ++  +    +L 
Sbjct: 432 CLI-VFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLI 490

Query: 183 EFRLPVKELDEEFRIVQLCVN---KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS 239
              L +K+    F + +  +    KPDV              +L+ N ++ F    ++  
Sbjct: 491 NGFLKLKDWTNAFTVFEDVIKDGLKPDV--------------VLYNNIIKAFCGMGNMDR 536

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A+      +K    P       II      G+  ++  I++ +R       ++ FN+L+ 
Sbjct: 537 AIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVL 596

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
             V    ++  +E+   M   GV  D  +Y  ++      G+T  A E + ++++   +G
Sbjct: 597 GLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRN---EG 653

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            L+LDVFTY  ++K    +   Q AL V  +M +  +  NT  ++ LI+  A  G V +A
Sbjct: 654 -LELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEA 712

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
             L ++M Q G +P+       + AC +A    RA
Sbjct: 713 ADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRA 747



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 6/223 (2%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           +KR +  A+   D       SP+ +   TI++     GD  K+   +  LR++ + L+++
Sbjct: 600 EKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVF 659

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            + +L+     +  ++  L V + M    +  +   YNIL+      G+   A ++  ++
Sbjct: 660 TYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQM 719

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K    +GV + D+ TY++ +     A     A K  ++M + GV PN  T+++LI+  A 
Sbjct: 720 KQ---EGV-QPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWAC 775

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           A L E+A+  FEEM  AG +P+    + L+ + +       A+
Sbjct: 776 ASLPEKALRCFEEMKLAGLKPDKAVYHCLMTSLLSRATVAEAY 818



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 135/318 (42%), Gaps = 31/318 (9%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           ++ ++  ++  + +   I +++++MN      + +  L V+K +++ G    + SY  L+
Sbjct: 396 RAESLVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLI 455

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
                 G    A E+    K +E+ G+ K ++ TYS ++  F   K W  A  V ED++ 
Sbjct: 456 NMYTKMGKVSKALEV---SKMMESAGI-KHNMKTYSMLINGFLKLKDWTNAFTVFEDVIK 511

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+ P+ + ++++I A    G +++A+H+ +EM +    P S+    ++     A +  R
Sbjct: 512 DGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRR 571

Query: 452 AFRLF----RSWTLSKTQ----VALG----EDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
           A  +F    RS  +        + LG       +   + +  M         +T   + N
Sbjct: 572 ALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMN 631

Query: 500 SHYSSFDKRFSFKPTTT-----------TYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
            + +  D   +F+  T            TY  L+KACC       AL    EM    +  
Sbjct: 632 GYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPR 691

Query: 547 NHISWTILIDACGGSGNV 564
           N   + ILID     G+V
Sbjct: 692 NTFVYNILIDGWARRGDV 709



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 145/331 (43%), Gaps = 33/331 (9%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327
           GD  ++R  +E +R + +  + +V+ SL++  A   D++  L   + M++ GV   + +Y
Sbjct: 316 GDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTY 375

Query: 328 NILLKACCLAGNTVLA---QEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMAL 383
           +I++      GN   +         V+ +E +G+   +D+  Y T++  +      +  L
Sbjct: 376 SIVVGGFAKIGNADQSCNMDRAESLVREMEEEGIDAPIDI--YHTMMNGYTMIGNEEKCL 433

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
            V + +   G  P+ I++  LIN     G V +A+ + + M  AG + N +  ++L+   
Sbjct: 434 IVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGF 493

Query: 444 VEACQFDRAFRLFRSWTLS--KTQVALGEDYD------GNTDRISNM--EHKDKQSITNT 493
           ++   +  AF +F        K  V L  +        GN DR  +M  E + K+    +
Sbjct: 494 LKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTS 553

Query: 494 PNFVPNSH-----------YSSFD--KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNE 538
             F+P  H              FD  +R    PT  T+N L+          KA  +++E
Sbjct: 554 RTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDE 613

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           M   G+SP+  ++T +++     G+   A +
Sbjct: 614 MALAGVSPDEHTYTTIMNGYAALGDTGKAFE 644


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 146/364 (40%), Gaps = 55/364 (15%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           PN+   R ++  C   G   + + I   + ++    N  +FNSL++    + D  +  ++
Sbjct: 305 PNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKL 364

Query: 312 YKNMQKLGVMADMASYNILLKACC----LAGNTVL--AQEIYGEVKHLE----------- 354
           +K M K G       YNI + + C    L G+ +L  A++ Y E+  L            
Sbjct: 365 FKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNF 424

Query: 355 ---------------------AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
                                +KG +  D  TYS ++    DA   + A  + E+M   G
Sbjct: 425 ARCLCGAGKFDKAFEIICEMMSKGFVPDDS-TYSKVIGFLCDASKVEKAFLLFEEMKKNG 483

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + P+  T++ LI++   AGL++QA + F+EML+  C PN      L+ A ++A +   A 
Sbjct: 484 IVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDAN 543

Query: 454 RLFRSWTL--------SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
           +LF    L        + T +  G    G  D+   +  + +  I ++        Y   
Sbjct: 544 KLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESS----DIDMYFKL 599

Query: 506 DKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
           D      P   TY  L+   C          L++ M   G  PN I +  LID    +G 
Sbjct: 600 DDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGK 659

Query: 564 VEGA 567
           +E A
Sbjct: 660 LENA 663



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 10/178 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN  +   +ID  G C  G    ++ ++  +  +    N+Y ++SL+N       L   L
Sbjct: 642 PNQIVYDALID--GFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVL 699

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V   M +     ++  Y  ++   C  G T   +E Y  +  +E  G    +V TY+ +
Sbjct: 700 KVLSKMLENSCTPNVVIYTDMIDGLCKVGKT---EEAYRLMLKMEEVGCYP-NVITYTAM 755

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           +  F      +  L++  DM S G  PN IT+  LIN C + GL+++A  L +EM Q 
Sbjct: 756 IDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQT 813



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 124/307 (40%), Gaps = 40/307 (13%)

Query: 294 FNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L+ V   A  L     V++ M   G   D  +      + C AG         G+  
Sbjct: 208 YNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRC-------GDAL 260

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            L  K     D   Y+ +V    +A  +Q A+ + + M S    PN +T+  L++ C   
Sbjct: 261 SLLEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGK 320

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ------ 465
           G + +   +   M+  GC PN +  N L+ A  ++  +  A++LF+       Q      
Sbjct: 321 GQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLY 380

Query: 466 ------VALGEDYDG-NTDRISNMEHKDKQSITNTPNFVPNSHYS-------SFDKRF-- 509
                 +   E+  G +   ++   + +   +    N V  S+++        FDK F  
Sbjct: 381 NIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEI 440

Query: 510 -------SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGG 560
                   F P  +TY+ ++   C      KA  L  EM+  G+ P+  ++TILID+   
Sbjct: 441 ICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCK 500

Query: 561 SGNVEGA 567
           +G ++ A
Sbjct: 501 AGLIQQA 507



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 139/344 (40%), Gaps = 59/344 (17%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A   ++  KK+   P++Y    +ID     G   ++R  ++++   N T N+  + SL++
Sbjct: 472 AFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIH 531

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY----GEVKHL 353
             + A  +    ++++ M   G   ++ +Y  L+   C AG    A +IY    G+++  
Sbjct: 532 AYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESS 591

Query: 354 EAKGVLKLD--------VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +     KLD        + TY  +V     A   + A ++ + M   G  PN I + +LI
Sbjct: 592 DIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALI 651

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           +     G +E A  +F +M + G  PN    + L+ +  +  + D   ++     LSK  
Sbjct: 652 DGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKV-----LSKM- 705

Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525
                           +E+      + TPN V   +    D       T   Y +++K  
Sbjct: 706 ----------------LEN------SCTPNVV--IYTDMIDGLCKVGKTEEAYRLMLK-- 739

Query: 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
                        M  VG  PN I++T +ID  G  G +E  L+
Sbjct: 740 -------------MEEVGCYPNVITYTAMIDGFGKIGKIEQCLE 770



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 108/254 (42%), Gaps = 22/254 (8%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE- 280
           + + + +  + K R +  A + ++      S PN+     +ID     G   K+  IY  
Sbjct: 524 VTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYAR 583

Query: 281 ---DLRSQNV------------TLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMAD 323
              D+ S ++            T NI  + +L++    A+ ++   E+   M   G   +
Sbjct: 584 MQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPN 643

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
              Y+ L+   C  G    AQE++  VK +  +G    +++TYS+++      K   + L
Sbjct: 644 QIVYDALIDGFCKTGKLENAQEVF--VK-MSERGYCP-NLYTYSSLINSLFKEKRLDLVL 699

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           KV   ML    TPN + ++ +I+     G  E+A  L  +M + GC PN      ++   
Sbjct: 700 KVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGF 759

Query: 444 VEACQFDRAFRLFR 457
            +  + ++   L+R
Sbjct: 760 GKIGKIEQCLELYR 773


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 138/333 (41%), Gaps = 55/333 (16%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV------ 341
           N  +FNSL++   NA D  +  ++   M   G       YNI + + C +G  +      
Sbjct: 343 NPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSIC-SGEELPSPDLL 401

Query: 342 -LAQEIYGEV-----------------------KHLEAKGVLKL--------DVFTYSTI 369
            LA+++Y E+                       K  +A  ++KL        D  TYS +
Sbjct: 402 ALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKV 461

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +    +A   + A  + ++M S GV P+  T++ LI++    GL+EQA   F+EM   GC
Sbjct: 462 ITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGC 521

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISN 481
            P+      LL A ++  Q  +A  +F           T++ + +  G    G + +   
Sbjct: 522 SPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACE 581

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEM 539
           +  K    +  T + V +  Y   +   S  P   TY  L+   C  +  V A  L++ M
Sbjct: 582 VYAK----MIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVM 637

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
            + G  PNHI +  LID     G ++ A +  F
Sbjct: 638 SSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFF 670



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 10/208 (4%)

Query: 253 SPNMYICRTIIDVCGICGDY--MKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           +PN+     +ID  G+C  +  + ++ + + + S     N  ++++L++       L   
Sbjct: 608 APNVVTYGALID--GLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNA 665

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            EV+  M K G +  + +Y  L+ A        LA ++  ++  LE+      +V TY+ 
Sbjct: 666 QEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQM--LESS--CTPNVVTYTA 721

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++         Q ALK+   M   G  PN +T++SLI+    +G V+ ++ LF +M+  G
Sbjct: 722 MIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQG 781

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
           C PN     +L+  C  A   D A  L 
Sbjct: 782 CAPNYVTYRVLINHCCAAGLLDEAHSLL 809



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 6/188 (3%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           D + S   +E   + ++  N+  + +L++    AH +    E+   M   G   +   Y+
Sbjct: 591 DNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYD 650

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            L+   C  G    AQE++  +      G L   V TY++++      +   +A+KV   
Sbjct: 651 ALIDGFCKVGKLDNAQEVFFRMSKC---GYLP-TVHTYTSLIDAMFKDRRLDLAIKVLSQ 706

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           ML +  TPN +T++++I+     G  ++A+ L   M + GC PN      L+    ++ +
Sbjct: 707 MLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGK 766

Query: 449 FDRAFRLF 456
            D + +LF
Sbjct: 767 VDMSLQLF 774



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 10/198 (5%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           K   +V A    D    +   PN  I   +ID  G C  G    ++ ++  +        
Sbjct: 623 KAHKVVDAQELLDVMSSNGCEPNHIIYDALID--GFCKVGKLDNAQEVFFRMSKCGYLPT 680

Query: 291 IYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           ++ + SL++    D  L   ++V   M +     ++ +Y  ++   C  G     Q+   
Sbjct: 681 VHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGE---CQKALK 737

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            +  +E +G    +V TY++++     +    M+L++   M++ G  PN +T+  LIN C
Sbjct: 738 LLSMMEKRGC-NPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHC 796

Query: 409 ANAGLVEQAMHLFEEMLQ 426
             AGL+++A  L  EM Q
Sbjct: 797 CAAGLLDEAHSLLSEMKQ 814



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 118/308 (38%), Gaps = 42/308 (13%)

Query: 294 FNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L+ V   A  +     V K M +LG   D  +     +A C  G        + +  
Sbjct: 210 YNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGR-------WSDAL 262

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            +  +   KLD    + ++    +A  +  A+     M      PN +T+ +L+      
Sbjct: 263 VMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKK 322

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS------------W 459
             +     +   M+  GC PN    N L+ +   A  +  A++L               +
Sbjct: 323 KQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVY 382

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSIT--------NTPNFVPN-SHYSSFDKRF- 509
            +    +  GE+   + D ++  E   ++ +         NT NF         FDK F 
Sbjct: 383 NIFIGSICSGEELP-SPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQ 441

Query: 510 --------SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACG 559
                    F P T+TY+ ++   C      KA  L  EM++VG+ P+  ++TILID+  
Sbjct: 442 IIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFC 501

Query: 560 GSGNVEGA 567
             G +E A
Sbjct: 502 KVGLIEQA 509



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 89/254 (35%), Gaps = 58/254 (22%)

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N++++ CC  G    A E  G +K    +        TY+ +V+V A A    M  +V++
Sbjct: 176 NVIVRKCCRHGAWAKALEELGRLKDFGYRP----SGATYNALVQVLATAGQMDMGFRVQK 231

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M   G   +  T      A    G    A+ + E   +   + ++  C  ++   +EA 
Sbjct: 232 EMSELGFCTDKFTVGCFAQALCKEGRWSDALVMIE---REDFKLDTVLCTQMISGLMEAS 288

Query: 448 QFDRA------------------FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            FD A                  +R   +  L K Q+       G   RI +M   +   
Sbjct: 289 LFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQL-------GWCKRIISMMMNE--- 338

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN 547
                                  P  + +N L+ + C   DY     L+N M   G  P 
Sbjct: 339 --------------------GCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPG 378

Query: 548 HISWTILIDA-CGG 560
           ++ + I I + C G
Sbjct: 379 YVVYNIFIGSICSG 392


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 134/304 (44%), Gaps = 32/304 (10%)

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           +++ E++ S  +  NIY +   + V   A  +     + K M+  G   D+ +Y +L+ A
Sbjct: 249 KSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDA 308

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C AG    A E++ ++K    K     D  TY T++  F+D        +   +M + G
Sbjct: 309 LCTAGKLDDAMELFVKMKASSHKP----DRVTYITMLDKFSDCGDLGRVKEFWSEMEADG 364

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             P+ IT++ L+NA   AG +++A HL + M + G  PN    N L+   +   + D A 
Sbjct: 365 YAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDAL 424

Query: 454 RLFRSW-TLSKTQVA----LGEDYDGNTDRISN-MEHKDKQSITN-TPNFVP-NSHYSSF 505
            LF +  TL     A    L  D+ G + R    +E  +K  I    PN V  N+   S 
Sbjct: 425 DLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSL 484

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            +    +                    K + N +++ GL+P+ +++ +++     +G V+
Sbjct: 485 AEMGRLR------------------EAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVD 526

Query: 566 GALQ 569
            A++
Sbjct: 527 EAIE 530



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 93/190 (48%), Gaps = 6/190 (3%)

Query: 270  GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
            G   +++ ++E++       N  ++N L+N      D+    E++K M + G+  D+ SY
Sbjct: 909  GRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSY 968

Query: 328  NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
              L+   C AG    A   + ++K       L LD   Y+ ++     +   + AL + +
Sbjct: 969  TSLVGCLCEAGRVDDALHYFEKLKQTG----LYLDSIAYNLMIDGLGRSHRIEEALTLYD 1024

Query: 388  DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            +M S G+ P+  T++SLI     AG+VEQA  L+EE+   G EPN    N L++    + 
Sbjct: 1025 EMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSG 1084

Query: 448  QFDRAFRLFR 457
              D A+ +++
Sbjct: 1085 NSDSAYAVYK 1094



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 122/283 (43%), Gaps = 20/283 (7%)

Query: 288  TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
            TL  Y F     +  H+ +    ++  M+  G   D+ +YN+LL A   +G      E+Y
Sbjct: 789  TLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELY 848

Query: 348  GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             ++     K     +  T++ I+     +     AL +  D++S   +P   T+  L++ 
Sbjct: 849  EQMICSSCKP----NTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDG 904

Query: 408  CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
               +G +E+A  LFEEM+  GC PN+   NIL+    +    + A  LF+       +  
Sbjct: 905  LLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRM----VREG 960

Query: 468  LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS-HYSSFDKRFSFKPTTTTYNILMKACC 526
            +  D    T  +  +    +         V ++ HY    K+      +  YN+++    
Sbjct: 961  IRPDLKSYTSLVGCLCEAGR---------VDDALHYFEKLKQTGLYLDSIAYNLMIDGLG 1011

Query: 527  TDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              +   +AL   +EM++ G++P+  ++  LI   G +G VE A
Sbjct: 1012 RSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQA 1054



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 118/264 (44%), Gaps = 28/264 (10%)

Query: 330  LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
            ++K  C     ++AQ ++  ++  +  GV K  + +Y+ +++ F      +MA  +  +M
Sbjct: 760  IIKVLCKHKQALVAQSVF--IRFTKELGV-KPTLESYNFLIEGFLGVHNDEMAWNLFTEM 816

Query: 390  LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
             +AG  P+  T++ L++A   +G + +   L+E+M+ + C+PN+   NI++   V++   
Sbjct: 817  KNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSL 876

Query: 450  DRAFRLFR---SWTLSKTQVALGEDYDG--NTDRISNMEHKDKQSIT---NTPNFVPNSH 501
            D+A  LF    S   S T    G   DG   + R+   +   ++ +       N + N  
Sbjct: 877  DKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNIL 936

Query: 502  YSSFDK---------------RFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGL 544
             + F K               R   +P   +Y  L+   C       AL    +++  GL
Sbjct: 937  INGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGL 996

Query: 545  SPNHISWTILIDACGGSGNVEGAL 568
              + I++ ++ID  G S  +E AL
Sbjct: 997  YLDSIAYNLMIDGLGRSHRIEEAL 1020



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 107/265 (40%), Gaps = 49/265 (18%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           L+ T   +  M++ G   +  SYN L+     +G    A E+Y   + +  +G LK  + 
Sbjct: 175 LRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGLCREALEMY---RRMVLEG-LKPSLK 230

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           T+S ++      +  +    + E+M S G+ PN  T++  I     AG +++A  + + M
Sbjct: 231 TFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRM 290

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
              GC P+     +L+ A   A + D A  LF     S  +           DR++ +  
Sbjct: 291 EDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHK----------PDRVTYITM 340

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGL 544
            DK S                                    C D  RVK   +EM   G 
Sbjct: 341 LDKFSD-----------------------------------CGDLGRVKEFWSEMEADGY 365

Query: 545 SPNHISWTILIDACGGSGNVEGALQ 569
           +P+ I++TIL++A   +GN++ A  
Sbjct: 366 APDVITFTILVNALCKAGNIDEAFH 390



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/348 (19%), Positives = 134/348 (38%), Gaps = 42/348 (12%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           L  A+  +   K     P+     T++D    CGD  + +  + ++ +     ++  F  
Sbjct: 315 LDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTI 374

Query: 297 LMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           L+N    A ++     +   M+K GV+ ++ +YN L+           A +++    ++E
Sbjct: 375 LVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLF---NNME 431

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
             GV+    +TY   +  +  +     AL+  E M   G+ PN +  ++ + + A  G +
Sbjct: 432 TLGVVP-TAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRL 490

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG 474
            +A  +F  +   G  P+S   N++++   +A Q D A  L                   
Sbjct: 491 REAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIEL------------------- 531

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFD-----------KRFSFKPTTTTYNILMK 523
               +S+M     +      N + N+ Y +             K     PT  TYN L+ 
Sbjct: 532 ----LSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIA 587

Query: 524 ACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               +    R   L   M   G  PN I++  ++D    +  V+ AL+
Sbjct: 588 GLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALK 635



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 94/213 (44%), Gaps = 14/213 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEV 311
           P  Y     ID  G  G   K+   +E ++ + +  NI   N+ +   A    L+    +
Sbjct: 437 PTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVI 496

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  ++  G+  D  +YN+++K    AG    A E+  ++   + +     D+   ++++ 
Sbjct: 497 FNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEP----DIIVINSLIN 552

Query: 372 VFADA----KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
               A    + W+M  ++K+  L+    P  +T+++LI      G V++AM LF  M   
Sbjct: 553 TLYKAGRVDEAWKMFCRLKDMKLA----PTVVTYNTLIAGLGKEGQVQRAMELFASMTGN 608

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           GC PN+   N +L    +  + D A ++    T
Sbjct: 609 GCPPNTITFNTILDCLCKNDEVDLALKMLYKMT 641



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 92/182 (50%), Gaps = 6/182 (3%)

Query: 254  PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
            PN  I   +I+  G  GD   +  +++ +  + +  ++  + SL+     A  +   L  
Sbjct: 928  PNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHY 987

Query: 312  YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            ++ +++ G+  D  +YN+++     +     A  +Y E   ++++G+   D+FTY++++ 
Sbjct: 988  FEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDE---MQSRGI-NPDLFTYNSLIL 1043

Query: 372  VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                A   + A K+ E++   G+ PN  T+++LI   + +G  + A  +++ M+  GC P
Sbjct: 1044 NLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSP 1103

Query: 432  NS 433
            N+
Sbjct: 1104 NT 1105



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 105/246 (42%), Gaps = 11/246 (4%)

Query: 216 IVPRAD--ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
           +VP A   ILF +F   +GK      AL  ++  K    +PN+  C   +      G   
Sbjct: 435 VVPTAYTYILFIDF---YGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLR 491

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +++ I+  L+S  +  +   +N +M     A  +   +E+  +M +     D+   N L+
Sbjct: 492 EAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLI 551

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
                AG    A +++  +K ++    L   V TY+T++         Q A+++   M  
Sbjct: 552 NTLYKAGRVDEAWKMFCRLKDMK----LAPTVVTYNTLIAGLGKEGQVQRAMELFASMTG 607

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G  PNTIT++++++       V+ A+ +  +M    C P+    N ++   V   +   
Sbjct: 608 NGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSD 667

Query: 452 AFRLFR 457
           A  LF 
Sbjct: 668 AIWLFH 673



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 88/182 (48%), Gaps = 6/182 (3%)

Query: 227  FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
             +  FGK  D+ +A   +    +    P++    +++      G    +   +E L+   
Sbjct: 936  LINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTG 995

Query: 287  VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
            + L+   +N +++    +H ++  L +Y  MQ  G+  D+ +YN L+    +AG    A 
Sbjct: 996  LYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAG 1055

Query: 345  EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
            ++Y E++ +     L+ +VFTY+ +++ ++ +     A  V + M+  G +PNT T++ L
Sbjct: 1056 KLYEELQFIG----LEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111

Query: 405  IN 406
             N
Sbjct: 1112 PN 1113


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 144/328 (43%), Gaps = 39/328 (11%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P++ +   +ID     G   K+  + + +  + +  N+  +N L+N    +  +K  + V
Sbjct: 218 PDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGV 277

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            K M + GV  D+ +YN L+K   L+    + + ++   + +  K ++K +V T++++++
Sbjct: 278 LKKMSEKGVAPDVVTYNTLIKG--LSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQ 335

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
              D    + A +V+  M   G   N +T++ LI        V +AM L +EM   G EP
Sbjct: 336 GLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEP 395

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ----------VALGEDYDGNTDRISN 481
           +S   +IL++   +  Q DRA  L  +      +          VA+ E   G  +R  N
Sbjct: 396 DSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE--QGMMERARN 453

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEM 539
           +                   ++  D  F        Y+ ++   C   D    K L+  +
Sbjct: 454 L-------------------FNEMDNNFPLD--VVAYSTMIHGACKAGDLKTAKELLKSI 492

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
              GL+P+ ++++I+I+    SG++E A
Sbjct: 493 VDEGLTPDAVTYSIVINMFAKSGDMEAA 520



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 130/304 (42%), Gaps = 40/304 (13%)

Query: 268 ICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMAD 323
           +C D +  +A+     +RS  V  ++  + +L+    +A ++   +E+   M + G+  +
Sbjct: 125 LCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPN 184

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           +  Y+ LL+  C +G      +++ E   +  KG+ + DV  Y+ ++         + A 
Sbjct: 185 VVVYSSLLQGYCKSGRWEDVGKVFVE---MSEKGI-EPDVVMYTGLIDSLCKVGKAKKAH 240

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
            V + M+  G+ PN +T++ LIN     G V++A+ + ++M + G  P+    N L++  
Sbjct: 241 GVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300

Query: 444 VEACQFDRAFRLFRSWTLSK-----TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
            +  + D A  L       K       V       G  D I  M                
Sbjct: 301 SDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCD-IGRMRQ-------------- 345

Query: 499 NSHYSSFDKRFSFKPTT-----TTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISW 551
                +F  R   + T       TYN+L+      +   KA  LM+EM ++GL P+  ++
Sbjct: 346 -----AFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTY 400

Query: 552 TILI 555
           +ILI
Sbjct: 401 SILI 404



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 25/240 (10%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D  SYN +L A C  G+   A  +      LE     + +  +Y+ +++     +    A
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALL-RAMSLEPHPACRPNAVSYTVLMRALCADRLADQA 134

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           + +   M SAGV  + +T+ +LI    +A  V++A+ L  EM ++G EPN    + LLQ 
Sbjct: 135 VGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQG 194

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNMEHKDKQSITNTPNFVPN 499
             ++ +++   ++F    +  ++  +  D   Y G  D +  +    K            
Sbjct: 195 YCKSGRWEDVGKVF----VEMSEKGIEPDVVMYTGLIDSLCKVGKAKKA----------- 239

Query: 500 SHYSSFDK--RFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
             +   D   R   +P   TYN+L+   C +    +A+  + +M   G++P+ +++  LI
Sbjct: 240 --HGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLI 297



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 108/243 (44%), Gaps = 36/243 (14%)

Query: 249 KHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHD 304
           K++  PN+    ++I   G+C  G   ++  +   +      +N+  +N L+   +  H 
Sbjct: 320 KNIVKPNVVTFNSVIQ--GLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHK 377

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ-------------EIYGEVK 351
           ++  +E+   M  LG+  D  +Y+IL+K  C       A+             E++  + 
Sbjct: 378 VRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIP 437

Query: 352 HLEA---KGVLK--------------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
            L A   +G+++              LDV  YST++     A   + A ++ + ++  G+
Sbjct: 438 LLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGL 497

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           TP+ +T+S +IN  A +G +E A  + ++M  +G  P+    + L+Q      + ++   
Sbjct: 498 TPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLE 557

Query: 455 LFR 457
           L R
Sbjct: 558 LIR 560



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+ +Y+ ++   C AG+   A+E+   +K +  +G L  D  TYS ++ +FA +   + A
Sbjct: 465 DVVAYSTMIHGACKAGDLKTAKEL---LKSIVDEG-LTPDAVTYSIVINMFAKSGDMEAA 520

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
             V + M ++G  P+   + SLI   +  G + + + L  EM+      +S+  + L
Sbjct: 521 NGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTL 577


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 105/196 (53%), Gaps = 10/196 (5%)

Query: 254 PNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN+    T+I+  G C D    K+R + E L    +  +I+ F+S+++        +  L
Sbjct: 462 PNLVTFNTLIN--GHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEAL 519

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E +  M + G+  +   YNIL+++ C  G+   + ++   ++ ++ +G+   D ++Y+ +
Sbjct: 520 ECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKL---LRRMQKEGI-SPDTYSYNAL 575

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +++F      + A K+ + M  +G+ P+  T+S+ I A + +G +E+A  +F  M   GC
Sbjct: 576 IQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGC 635

Query: 430 EPNSQCCNILLQACVE 445
            P+S  CN++++  V+
Sbjct: 636 SPDSYICNLIIKILVQ 651



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 96/187 (51%), Gaps = 6/187 (3%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +Y  L S  +  N++ +N ++N    A  +    E +++MQ  GV+ ++ ++N L+   C
Sbjct: 416 VYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHC 475

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    A+++   ++ L   G LK D+FT+S+IV      K  + AL+   +M+  G+ 
Sbjct: 476 KDGAIDKARKL---LESLLENG-LKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGIN 531

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN + ++ LI +    G V +++ L   M + G  P++   N L+Q      + ++A +L
Sbjct: 532 PNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKL 591

Query: 456 FRSWTLS 462
           F S + S
Sbjct: 592 FDSMSRS 598



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 104/254 (40%), Gaps = 24/254 (9%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G     + +N+++ AC + G  +  +E     + L  +GV K  +  Y  +++V    +W
Sbjct: 354 GYFPGNSVFNVVM-ACLVKGAEL--RETCDVFEILRKQGV-KAGIGAYLALIEVLYKNEW 409

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            +   +V   ++S G+  N  +++ +IN    A L++ A   F +M   G  PN    N 
Sbjct: 410 REEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNT 469

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNMEHKDKQSITNTPN 495
           L+    +    D+A +L  S      +  L  D   +    D +  ++  ++     T  
Sbjct: 470 LINGHCKDGAIDKARKLLESL----LENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEM 525

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTI 553
                        +   P    YNIL+++ CT  D  R   L+  M+  G+SP+  S+  
Sbjct: 526 I-----------EWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNA 574

Query: 554 LIDACGGSGNVEGA 567
           LI        VE A
Sbjct: 575 LIQIFCRMNKVEKA 588



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 4/153 (2%)

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
           ++  V+  +  LG+      YN L+ A   + +  LA   Y + + + A   +  D FTY
Sbjct: 162 YSAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLA---YLKFQQMAADNCVA-DRFTY 217

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++           AL++   M   G  PN  T++ LI     A  V++A  +FE M  
Sbjct: 218 NTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKD 277

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           +G  PN      L+          +A  L   +
Sbjct: 278 SGVYPNEATVRALVHGVFRCVDPSKALELLSEF 310



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 6/133 (4%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           + ++L+  N+ DL +    ++ M     +AD  +YN L+   C  G   +  E    V+ 
Sbjct: 185 LIDALVKSNSIDLAYL--KFQQMAADNCVADRFTYNTLIHGVCKVG---VVDEALRLVRQ 239

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           ++ KG    +VFTY+ +++ F  A     A  V E M  +GV PN  T  +L++      
Sbjct: 240 MKDKGHFP-NVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRALVHGVFRCV 298

Query: 413 LVEQAMHLFEEML 425
              +A+ L  E L
Sbjct: 299 DPSKALELLSEFL 311


>gi|302841458|ref|XP_002952274.1| hypothetical protein VOLCADRAFT_42994 [Volvox carteri f.
           nagariensis]
 gi|300262539|gb|EFJ46745.1| hypothetical protein VOLCADRAFT_42994 [Volvox carteri f.
           nagariensis]
          Length = 225

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 7/183 (3%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMA-SYNILLKA 333
           A+  ++ ++ V  N++ F++LMNV   A   +  L+V++ +Q  G M  +  +YN L+ A
Sbjct: 7   ALSREMVARGVPRNVHTFSALMNVCIKAGQHQTALDVWRELQDAGGMEPVTRTYNTLMIA 66

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
           C  +     A  +Y E   + A G    +  TY+ ++ V+  A   +  ++   +M SAG
Sbjct: 67  CNSSNQWHEALGVYNE---MLANGHTP-NTTTYNALITVYTKAGQLEKVMETFREMESAG 122

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
                IT+S+LI+AC   G  E A+ +F +ML+ GC PN    N L+ A     Q++RA 
Sbjct: 123 CERTVITYSALISACERDGQWELALQMFSQMLREGCTPNVITYNSLITALAAGSQWERAA 182

Query: 454 RLF 456
            +F
Sbjct: 183 DVF 185



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 3/153 (1%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           D++  L + + M   GV  ++ +++ L+  C  AG    A +++   + L+  G ++   
Sbjct: 1   DMELALALSREMVARGVPRNVHTFSALMNVCIKAGQHQTALDVW---RELQDAGGMEPVT 57

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY+T++     +  W  AL V  +ML+ G TPNT T+++LI     AG +E+ M  F E
Sbjct: 58  RTYNTLMIACNSSNQWHEALGVYNEMLANGHTPNTTTYNALITVYTKAGQLEKVMETFRE 117

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           M  AGCE      + L+ AC    Q++ A ++F
Sbjct: 118 MESAGCERTVITYSALISACERDGQWELALQMF 150



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 50/193 (25%)

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPNSQCCNI 438
           ++AL +  +M++ GV  N  T+S+L+N C  AG  + A+ ++ E+  AG  EP ++  N 
Sbjct: 3   ELALALSREMVARGVPRNVHTFSALMNVCIKAGQHQTALDVWRELQDAGGMEPVTRTYNT 62

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           L+ AC  + Q+  A  ++                                        + 
Sbjct: 63  LMIACNSSNQWHEALGVYNE-------------------------------------MLA 85

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILID 556
           N H           P TTTYN L+          +V     EM + G     I+++ LI 
Sbjct: 86  NGH----------TPNTTTYNALITVYTKAGQLEKVMETFREMESAGCERTVITYSALIS 135

Query: 557 ACGGSGNVEGALQ 569
           AC   G  E ALQ
Sbjct: 136 ACERDGQWELALQ 148



 Score = 39.3 bits (90), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 6/150 (4%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           AL  Y+    +  +PN      +I V    G   K    + ++ S      +  +++L++
Sbjct: 76  ALGVYNEMLANGHTPNTTTYNALITVYTKAGQLEKVMETFREMESAGCERTVITYSALIS 135

Query: 300 VNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY----GEVKHL 353
               D   +  L+++  M + G   ++ +YN L+ A         A +++     + + L
Sbjct: 136 ACERDGQWELALQMFSQMLREGCTPNVITYNSLITALAAGSQWERAADVFVQLQRQARRL 195

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
            A    + DV TY+ ++  +     W+ AL
Sbjct: 196 GAGEGCEPDVVTYTALINAYGRGGQWRRAL 225


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 105/228 (46%), Gaps = 6/228 (2%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            V  F K  ++  A+R ++  +K    P+    R II+   + GD  ++    + +R   
Sbjct: 502 LVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSG 561

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
               +  +N+L++  V  H ++  + V   M   G+  +  +Y I+++    +G+   A 
Sbjct: 562 CAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAF 621

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           E + ++K    +  LKLDV+ Y T+++    +   Q AL V  +M    +  NT  ++ L
Sbjct: 622 EYFTKIK----ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 677

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           I+  A  G V +A  L ++M + G  PN       + AC +A    RA
Sbjct: 678 IDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRA 725



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/379 (20%), Positives = 148/379 (39%), Gaps = 100/379 (26%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327
           GD   +RA +E++R++ +  N +VF SL++  A   D++  L   + M+  G+   + +Y
Sbjct: 265 GDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSEGIEMTVVTY 324

Query: 328 NILL-----------------------------------KACCLAGNTVLAQEIYGEVKH 352
           +IL+                                    A C +GN   A+E+   V+ 
Sbjct: 325 SILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEEL---VRE 381

Query: 353 LEAKGV----------------------------------LKLDVFTYSTIVKVFADAKW 378
           +E  G+                                   K  + +Y  ++ ++     
Sbjct: 382 MEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGK 441

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A+ + ++M S G+  N  T+S LIN   +      A  +FE+M+++G +P+    N+
Sbjct: 442 VPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNL 501

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF-V 497
           L++A  +    DRA R+F      +                  M+  ++        F V
Sbjct: 502 LVEAFCKMGNMDRAIRIFERMQKER------------------MQPSNRTFRPIIEGFAV 543

Query: 498 PNSHYSSFD-----KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHIS 550
                 +FD     +R    PT  TYN L+      +   KA  ++++M   G++PN  +
Sbjct: 544 AGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHT 603

Query: 551 WTILIDACGGSGNVEGALQ 569
           +TI++     SG++  A +
Sbjct: 604 YTIIMRGYAASGDIGKAFE 622



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 137/339 (40%), Gaps = 53/339 (15%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   K+ AI +++ S  +  N   ++ L+N  ++ HD      ++++M K G+  D A Y
Sbjct: 440 GKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIY 499

Query: 328 NILLKACCLAGNTVLAQEIYGE----------------VKHLEAKGVLK-----LD---- 362
           N+L++A C  GN   A  I+                  ++     G +K     LD    
Sbjct: 500 NLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRR 559

Query: 363 ------VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
                 V TY+ ++         + A+ V + M  AG+ PN  T++ ++   A +G + +
Sbjct: 560 SGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGK 619

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK---TQVALGEDYD 473
           A   F ++ ++G + +      LL+AC ++ +   A  + R  +  K            D
Sbjct: 620 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILID 679

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYR 531
           G   R    E  D           PN H            T T+Y   + ACC   D  R
Sbjct: 680 GWARRGDVWEAADLLKQMKEDGIPPNIH------------TFTSY---INACCKAGDMQR 724

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
            + ++ EM  VGL PN  ++T LI         + AL+C
Sbjct: 725 AENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRALKC 763



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 90/182 (49%), Gaps = 6/182 (3%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           +R +    D+  A   +   K+     ++YI  T++  C   G    + A+  ++  Q +
Sbjct: 608 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKI 667

Query: 288 TLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             N +++N L++  A   D+    ++ K M++ G+  ++ ++   + ACC AG+   A+ 
Sbjct: 668 PRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAEN 727

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +  E+    A   LK +V T++T++K +A       ALK  E+M SAG+ P+   +  L+
Sbjct: 728 VIQEM----ADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLV 783

Query: 406 NA 407
            +
Sbjct: 784 TS 785



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +PN +    I+      GD  K+   +  ++   + L++Y++ +L+     +  ++  L 
Sbjct: 598 APNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALA 657

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M    +  +   YNIL+      G+   A ++   +K ++  G+   ++ T+++ +
Sbjct: 658 VTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADL---LKQMKEDGIPP-NIHTFTSYI 713

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A   Q A  V ++M   G+ PN  T+++LI   A   L ++A+  FEEM  AG +
Sbjct: 714 NACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSAGLK 773

Query: 431 PNSQCCNILL 440
           P+    + L+
Sbjct: 774 PDEAAYHCLV 783


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 140/320 (43%), Gaps = 35/320 (10%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E +R      +++    L+N    A       +VYK M ++GV+ ++  +N+L+ ACC
Sbjct: 149 VFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACC 208

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +G+   A+++  E   +E++ +   D+FTY+T++ ++        AL +++ M   GV+
Sbjct: 209 KSGDVEKAEQLLNE---MESRFIFP-DLFTYNTLISLYCKKGMHYEALGIQDRMERGGVS 264

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +T++SLI      G + +A+ LF E+   G  PN      L+         + A RL
Sbjct: 265 PDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRL 322

Query: 456 FRSWTLSKTQVAL-------------GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
                +      +             G+  D N   ++ M  +  +    T N + N++ 
Sbjct: 323 REVMEVEGLHPGVVTYNSILRKLCEEGKIKDANR-LLNEMSERKVEPDNVTCNTLINAYC 381

Query: 503 SSFD--------KRF---SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549
              D        K+      KP   T+  L+   C   +    K  + EM   G SP++ 
Sbjct: 382 KIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYS 441

Query: 550 SWTILIDACGGSGNVEGALQ 569
           +++ L+D+     N E  ++
Sbjct: 442 TYSWLVDSYYDQDNKEAVIR 461



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 94/191 (49%), Gaps = 8/191 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD-LKF-TLEV 311
           PN++I   +I  C   GD  K+  +  ++ S+ +  +++ +N+L+++     + +  L +
Sbjct: 195 PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGI 254

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M++ GV  D+ +YN L+   C  G    A  ++ E+       V      TY+T++ 
Sbjct: 255 QDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGATPNHV------TYTTLID 308

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +      + AL+++E M   G+ P  +T++S++      G ++ A  L  EM +   EP
Sbjct: 309 GYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEP 368

Query: 432 NSQCCNILLQA 442
           ++  CN L+ A
Sbjct: 369 DNVTCNTLINA 379



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 22/210 (10%)

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           S +V  +A+++  Q A++V E M   G  P+    + L+N+ A A L      ++++M++
Sbjct: 131 SWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVR 190

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G  PN    N+L+ AC ++   ++A +L       +++    + +  NT  IS    K 
Sbjct: 191 VGVVPNIHIFNVLIHACCKSGDVEKAEQLLNE---MESRFIFPDLFTYNT-LISLYCKK- 245

Query: 487 KQSITNTPNFVPNSHYSSFD-----KRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRT 541
                         HY +       +R    P   TYN L+   C +    +AL      
Sbjct: 246 ------------GMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI 293

Query: 542 VGLSPNHISWTILIDACGGSGNVEGALQCR 571
            G +PNH+++T LID      ++E AL+ R
Sbjct: 294 NGATPNHVTYTTLIDGYCRVNDLEEALRLR 323



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 8/204 (3%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           + KK     AL   D  ++   SP++    ++I   G C +     A+         T N
Sbjct: 242 YCKKGMHYEALGIQDRMERGGVSPDIVTYNSLI--YGFCREGRMREALRLFREINGATPN 299

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
              + +L++     +DL+  L + + M+  G+   + +YN +L+  C  G    A  +  
Sbjct: 300 HVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLN 359

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E+   + +     D  T +T++  +        A+KVK+ ML AG+ P+  T+ +LI+  
Sbjct: 360 EMSERKVEP----DNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGF 415

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPN 432
                V+ A     EML AG  P+
Sbjct: 416 CKLHEVDSAKEFLFEMLDAGFSPS 439



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 104/238 (43%), Gaps = 16/238 (6%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYE 280
           L   F RE G+ R+ +   R  + +     +PN     T+ID  G C   D  ++  + E
Sbjct: 273 LIYGFCRE-GRMREALRLFREINGA-----TPNHVTYTTLID--GYCRVNDLEEALRLRE 324

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +  + +   +  +NS++        +K    +   M +  V  D  + N L+ A C  G
Sbjct: 325 VMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIG 384

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           +   A ++  + K LEA   LK D FT+  ++  F        A +   +ML AG +P+ 
Sbjct: 385 DMGSAMKV--KKKMLEAG--LKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSY 440

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            T+S L+++  +    E  + L +E+ + G   +      L++   +  + + A R+F
Sbjct: 441 STYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIF 498


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 146/341 (42%), Gaps = 38/341 (11%)

Query: 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV---NAHDLKFTLEVY 312
           +Y    II   G  G   ++  I+  ++   +  N+  +N++++       + K  LE++
Sbjct: 112 VYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIF 171

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M + G+  D  ++N LL  C   G    A+ +  E+ +   +G+ + D+FTY+T++  
Sbjct: 172 DEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVN---RGIDQ-DIFTYNTLLDA 227

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                   MA ++  +M +  + PN +T+S++I+  A AG ++ A +LF EM   G   +
Sbjct: 228 VCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLD 287

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSW----------TLSKTQVALGEDYDGNTDRISNM 482
               N LL    +  +F+ A  + R            T +      G+ Y  +  R    
Sbjct: 288 RVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFE 347

Query: 483 EHKDKQSITNTPNFVPNS-----------HYSSFD-----KRFSFKPTTTTYNILMKACC 526
           E K +     +PN +  S           +  + D     K+   K     Y+ L+ A C
Sbjct: 348 EMKARHV---SPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALC 404

Query: 527 TDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            +     A  L++EM   G+ PN +++  +IDA G     E
Sbjct: 405 KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTE 445



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 100/191 (52%), Gaps = 6/191 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           PN+    T+ID     G    +R ++ +++   ++L+   +N+L+++ A   +F   ++V
Sbjct: 251 PNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDV 310

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M+  G+  D+ +YN LL          + ++++ E+K       +  ++ TYST++ 
Sbjct: 311 CREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARH----VSPNLLTYSTLID 366

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           V++    ++ A+ V  +   AG+  + + +S+LI+A    GLVE A+ L +EM + G  P
Sbjct: 367 VYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP 426

Query: 432 NSQCCNILLQA 442
           N    N ++ A
Sbjct: 427 NVVTYNSIIDA 437



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 34/222 (15%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL-VEQAMHLF 421
           V+ +S I+  +  + +   A+K+   M   G+ PN +T++++I+AC   G+  ++ + +F
Sbjct: 112 VYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIF 171

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDR 478
           +EML+ G +P+    N LL  C +   ++ A    RS +       + +D   Y+   D 
Sbjct: 172 DEMLRNGMQPDRITFNSLLAVCSKGGLWEAA----RSLSCEMVNRGIDQDIFTYNTLLDA 227

Query: 479 ISNMEHKDK--QSITNTP--NFVPNSHYSSFDKRFSFKPTTTTYNILM----KACCTDYY 530
           +      D   + ++  P  N +PN                 TY+ ++    KA   D  
Sbjct: 228 VCKGGQLDMAFEIMSEMPAKNILPN---------------VVTYSTMIDGYAKAGRLDDA 272

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ-CR 571
           R   L NEM+ +G+S + +S+  L+      G  E A+  CR
Sbjct: 273 R--NLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCR 312



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 47/232 (20%), Positives = 99/232 (42%), Gaps = 26/232 (11%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R D++  N  +  +GK+       + ++  K    SPN+    T+IDV    G Y ++  
Sbjct: 320 RKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMD 379

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++ + +   +  ++ ++++L++    +  ++  + +   M K G+  ++ +YN ++ A  
Sbjct: 380 VFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFG 439

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST----------IVKVF---ADAKWWQMA 382
               T    +  G+   L+   +    V   +           I+K+F   A  K  Q  
Sbjct: 440 RPATTESVVDDAGQTSELQIDSLSSSAVEKATKSLVADREDNRIIKIFGQLAAEKAGQAK 499

Query: 383 ----------LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
                     L V   M    + PN +T+S+++NAC+     E+A  L EE+
Sbjct: 500 NSGGQEMMCILGVFHKMHELEIKPNVVTFSAILNACSRCNSFEEASMLLEEL 551


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 6/198 (3%)

Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NA 302
           D+ K    +P++Y   T+I  C     Y ++  ++E++++   + +   +N+L++V   +
Sbjct: 280 DSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKS 339

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
              +  +EV K M+  G    + +YN L+ A    G  +L + +  E+K    K  +K D
Sbjct: 340 RRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDG--LLDEAM--ELKSQMVKKGIKPD 395

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           VFTY+T++  F        A+KV E+M  AG  PN  T+++LI    N G   + M +FE
Sbjct: 396 VFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFE 455

Query: 423 EMLQAGCEPNSQCCNILL 440
           E+    C P+    N LL
Sbjct: 456 EIKICECVPDIVTWNTLL 473



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 133/311 (42%), Gaps = 56/311 (18%)

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNM 315
           +   II V G  G    + ++  DLR+  V ++IY + SL+   A + ++   + V+K +
Sbjct: 187 VVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKL 246

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           ++ G    + +YN++L      G  +   +I G V  +++ GV   D++TY+T++     
Sbjct: 247 EEEGCRPTLITYNVILNVYGKMG--MPWSKIAGLVDSMKSSGVAP-DLYTYNTLISSCRR 303

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
              ++ A +V E+M +AG +P+ +T+++L++    +    +AM + +EM  +G  P+   
Sbjct: 304 GSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVT 363

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
            N L+ A       D A  L       K+Q+                    K+ I     
Sbjct: 364 YNSLISAYARDGLLDEAMEL-------KSQMV-------------------KKGI----- 392

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKA---CCTDYYRVKALMNEMRTVGLSPNHISWT 552
                           KP   TY  L+        D Y +K +  EMR  G  PN  ++ 
Sbjct: 393 ----------------KPDVFTYTTLLSGFEKTGKDDYAMK-VFEEMRVAGCQPNICTFN 435

Query: 553 ILIDACGGSGN 563
            LI   G  GN
Sbjct: 436 ALIKMHGNRGN 446



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 153/337 (45%), Gaps = 30/337 (8%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A++ ++  +     PN+     +I + G  G++++   ++E+++      +I  +N+L+ 
Sbjct: 415 AMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLA 474

Query: 300 V---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           V   N  D + +  V+K M++ G + +  ++N L+ A    G    A  IY   + +   
Sbjct: 475 VFGQNGMDSEVS-GVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIY---RRMLDA 530

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           GV   D+ TY+ ++   A    W+ + KV  +M      PN +T+ SL++A AN   VE+
Sbjct: 531 GVTP-DLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVER 589

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEA---CQFDRAFRLFRSWTLSKTQVALGEDYD 473
              L EE+     EP +     L+    ++    + +RAF   R    S     L     
Sbjct: 590 MSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNA--- 646

Query: 474 GNTDRISNMEHKDKQSITNTP-NFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYY- 530
                +S    +   S TN   NF+ +S          F P+ TTYN LM     T+++ 
Sbjct: 647 ----MVSIYGRRRMVSKTNEILNFIKDS---------GFTPSLTTYNSLMYMYSRTEHFE 693

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           + + ++ E+   G+ P+ IS+  +I A   +G ++ A
Sbjct: 694 KSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEA 730



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 6/196 (3%)

Query: 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
           Y+ I+    +L    V  + K   L    RA+   ++   SP++     ++ + G     
Sbjct: 598 YSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMV 657

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNIL 330
            K+  I   ++    T ++  +NSLM + +    F  + ++ + +   G+  D+ S+N +
Sbjct: 658 SKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTV 717

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           + A C  G    A  I+ E+K       L  DV TY+T +  +A    +  A+ V + M+
Sbjct: 718 IFAYCRNGRMKEASRIFAEMKDFG----LAPDVITYNTFIASYASDSMFIEAIDVVKYMI 773

Query: 391 SAGVTPNTITWSSLIN 406
             G  PN  T++SLI+
Sbjct: 774 KNGCKPNQNTYNSLID 789



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/224 (20%), Positives = 110/224 (49%), Gaps = 10/224 (4%)

Query: 221 DILFCNFVREF--GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           ++ +C+ +  +  GK+ + +SAL     S   +  P   + +T++ V        ++   
Sbjct: 571 ELTYCSLLHAYANGKEVERMSALAEEIYSG--IIEPQAVLLKTLVLVYSKSDLLTETERA 628

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           + +LR Q  + +I   N+++++      +  T E+   ++  G    + +YN L+     
Sbjct: 629 FLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSR 688

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
             +   +++I  E+    AKG +K D+ +++T++  +      + A ++  +M   G+ P
Sbjct: 689 TEHFEKSEDILREII---AKG-MKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAP 744

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           + IT+++ I + A+  +  +A+ + + M++ GC+PN    N L+
Sbjct: 745 DVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLI 788


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 118/234 (50%), Gaps = 15/234 (6%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           G+  D    LR  D  K+ +  PN+     +ID     G+ +++R +Y+++  ++V  N+
Sbjct: 758 GRWTDAARLLR--DMVKRKID-PNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNV 814

Query: 292 YVFNSLMN-VNAH----DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           + +NSL+N    H    D K+  ++   M   G   D+ +YN L+   C +       ++
Sbjct: 815 FTYNSLINGFCIHGCLGDAKYMFDL---MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 871

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
           + E+ +    G    D FTY+T++  +  A    +A KV   M+  GV+P+ +T++ L++
Sbjct: 872 FCEMTYQGLVG----DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLD 927

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
              N G +E+A+ + E++ ++  + +    NI++Q      +   A+ LFRS T
Sbjct: 928 CLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLT 981



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+ V+N+L++      +L   LE+   M+K G+ AD+ +YN LL   C +G    A  + 
Sbjct: 175 NVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARML 234

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            ++     K  +  DV T++ ++ VF        A ++ ++M+ + V PN +T++S+IN 
Sbjct: 235 RDM----MKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIING 290

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
               G +  A   F+ M   GC PN    N L+    +    D   +LF+
Sbjct: 291 LCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQ 340



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 290 NIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
           +I  F SL++    VN     F+L +   M K G   ++  YN L+   C  G   +A E
Sbjct: 140 SIVTFGSLLHGFCLVNRIGDAFSLVIL--MVKSGYEPNVVVYNTLIDGLCKNGELNIALE 197

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +  E   +E KG L  DV TY+T++     +  W  A ++  DM+   + P+ +T+++LI
Sbjct: 198 LLNE---MEKKG-LGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALI 253

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFD 450
           +     G +++A  L++EM+Q+  +PN+   N ++   C+    +D
Sbjct: 254 DVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYD 299



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 141/353 (39%), Gaps = 71/353 (20%)

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLA 337
           E L+S+ +  +I  F  ++ V A   KF + +Y    M+ LG+  D+ S+ IL+   C  
Sbjct: 594 EMLQSRPIP-SIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRC 652

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
               LA  + G++  L      +  + T  +++  F     +Q A+ + + M   G  PN
Sbjct: 653 SRLSLALALLGKMMKLG----FRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPN 708

Query: 398 TITWSSLINA-CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            + ++++IN  C N  L   A+ +F  M + G   ++   N L+     + ++  A RL 
Sbjct: 709 VVIYNTVINGLCKNRDL-NNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLL 767

Query: 457 RSWTLSKTQ------VALGEDY--DGNTDRISNMEHKDKQSITNTPN-FVPNSHYSSF-- 505
           R     K         AL + +  +GN     N+ +K+    +  PN F  NS  + F  
Sbjct: 768 RDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNL-YKEMIRRSVVPNVFTYNSLINGFCI 826

Query: 506 -----DKRFSFK--------PTTTTYNIL-------------MKACCTDYYR-------- 531
                D ++ F         P   TYN L             MK  C   Y+        
Sbjct: 827 HGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFT 886

Query: 532 ----------------VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
                            + + N M   G+SP+ +++ IL+D    +G +E AL
Sbjct: 887 YNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKAL 939



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 109/230 (47%), Gaps = 15/230 (6%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           G+  D    LR  D  K+ ++ P++     +IDV    G+  +++ +Y+++   +V  N 
Sbjct: 225 GRWSDAARMLR--DMMKRSIN-PDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNN 281

Query: 292 YVFNSLMNV-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
             +NS++N        +D K T ++   M   G   ++ +YN L+   C      +  E 
Sbjct: 282 VTYNSIINGLCMHGRLYDAKKTFDL---MASKGCFPNVVTYNTLISGFC---KFRMVDEG 335

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
               + +  +G    D+FTY+T++  +      ++AL +   M+S  VTP+ IT   L++
Sbjct: 336 MKLFQRMSCEG-FNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLH 394

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
                G +E A+  F++M ++         NI++    +A + ++A+ LF
Sbjct: 395 GLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELF 444



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/214 (19%), Positives = 102/214 (47%), Gaps = 6/214 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I F   +  F K+ +L+ A   Y    +    PN++   ++I+   I G    ++ +++ 
Sbjct: 780 IFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDL 839

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S+    ++  +N+L+     +  ++  ++++  M   G++ D  +YN L+   C AG 
Sbjct: 840 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGK 899

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             +AQ+++  +        +  D+ TY+ ++    +    + AL + ED+  + +  + I
Sbjct: 900 LNVAQKVFNRM----VDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDII 955

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           T++ +I        +++A  LF  + + G +P++
Sbjct: 956 TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDA 989


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 145/332 (43%), Gaps = 44/332 (13%)

Query: 254 PNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTL 309
           P+ Y   T+I   G+CG      + A+ +D+  +    ++  +  L+         K  +
Sbjct: 150 PDTYTYNTLIR--GLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAV 207

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   M+  G   D+ +YN+++   C  G    A E    +K L + G  + +  +Y+ +
Sbjct: 208 KLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEF---LKSLPSYGC-EPNTVSYNIV 263

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +K    A+ W+ A K+  +M   G  PN +T++ LI+     GLVE AM + +++ + GC
Sbjct: 264 LKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGC 323

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFR------------SWTLSKTQVALGEDYDGNTD 477
            PNS   N +L A  +  + DRA                 S+    T +  G + D   +
Sbjct: 324 TPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVE 383

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN 537
            +  +  KDK     TP  +      S++         T  + L KA  T+      L+N
Sbjct: 384 LLHQL--KDKGC---TPVLI------SYN---------TVIDGLTKAGKTE--EALELLN 421

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           EM T GL P+ I+++ +       G +E A++
Sbjct: 422 EMVTKGLQPDIITYSTISSGLCREGRIEEAIK 453



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 157/391 (40%), Gaps = 68/391 (17%)

Query: 204 KPDVNLAIRYACI---VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICR 260
           KP +NLA   A     VP       + +R   ++ DL  A+R  + S   L       C 
Sbjct: 36  KPRLNLAYAGAVAPNAVPHRSAASNDRLRVLVRRGDLEEAIRLVE-SMAGLEPSAAGPCA 94

Query: 261 TIIDVCGICGDYMKSRAIY----EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316
            +I      G   ++R +      D+ S N  +  Y     ++ NA  L         + 
Sbjct: 95  ALIKKLCASGRTAEARRVLASCEPDVMSYNAMVAGYCVTGQLD-NARRL---------VA 144

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
            + +  D  +YN L++  C  G T  A  +  ++     +G +  DV TY+ +++     
Sbjct: 145 AMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLR---RGCVP-DVVTYTILLEATCKR 200

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
             ++ A+K+ ++M   G  P+ +T++ ++N     G V+ AM   + +   GCEPN+   
Sbjct: 201 SGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSY 260

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           NI+L+    A +++ A +L                       ++ M  K +      PN 
Sbjct: 261 NIVLKGLCTAERWEDAEKL-----------------------MAEMSRKGRP-----PNV 292

Query: 497 VPNSHYSSF--------------DK--RFSFKPTTTTYNILMKACCTDYY--RVKALMNE 538
           V  +   SF              D+  ++   P + +YN ++ A C      R  A +  
Sbjct: 293 VTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVEL 352

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           M + G  P+ +S+  L+ A    G V+ A++
Sbjct: 353 MVSSGCYPDIVSYNTLLTALCRGGEVDAAVE 383



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 5/126 (3%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D+ SYN LL A C  G    A E+  ++K      VL     +Y+T++     A  
Sbjct: 357 GCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVL----ISYNTVIDGLTKAGK 412

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN- 437
            + AL++  +M++ G+ P+ IT+S++ +     G +E+A+  F ++   G  PN+   N 
Sbjct: 413 TEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNA 472

Query: 438 ILLQAC 443
           ILL  C
Sbjct: 473 ILLGLC 478



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/333 (20%), Positives = 133/333 (39%), Gaps = 51/333 (15%)

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNI 329
           Y ++  + +++R +    +I  +N ++N    + +    +E  K++   G   +  SYNI
Sbjct: 203 YKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNI 262

Query: 330 LLKACCLAGNTVLAQEIYGE----------------VKHLEAKGVLK-----LD------ 362
           +LK  C A     A+++  E                +  L  +G+++     LD      
Sbjct: 263 VLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYG 322

Query: 363 ----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
                 +Y+ I+  F   K    A+   E M+S+G  P+ +++++L+ A    G V+ A+
Sbjct: 323 CTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAV 382

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478
            L  ++   GC P     N ++    +A + + A  L         Q  +   Y   +  
Sbjct: 383 ELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDI-ITYSTISSG 441

Query: 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCTDYYRVKA-- 534
           +   E + +++I             +F K      +P T  YN ++   C       A  
Sbjct: 442 LCR-EGRIEEAI------------KAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAID 488

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           L   M + G  PN  ++TILI+     G V+ A
Sbjct: 489 LFTYMVSNGCMPNESTYTILIEGLAYEGLVKEA 521



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 11/222 (4%)

Query: 226 NFVREFGKKRDLV-SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDL 282
           N +  F  +R LV  A+   D   K+  +PN      I+     C      RA+   E +
Sbjct: 296 NMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILH--AFCKQKKMDRAMAFVELM 353

Query: 283 RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            S     +I  +N+L+       ++   +E+   ++  G    + SYN ++     AG T
Sbjct: 354 VSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKT 413

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A E+  E   +  KG L+ D+ TYSTI          + A+K    +   G+ PNT+ 
Sbjct: 414 EEALELLNE---MVTKG-LQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVL 469

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +++++           A+ LF  M+  GC PN     IL++ 
Sbjct: 470 YNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEG 511



 Score = 42.7 bits (99), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 68/153 (44%), Gaps = 6/153 (3%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +   L+ +  T  +  +N++++    A   +  LE+   M   G+  D+ +Y+ +    C
Sbjct: 384 LLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLC 443

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    A + + +V+ +     ++ +   Y+ I+      +    A+ +   M+S G  
Sbjct: 444 REGRIEEAIKAFCKVQDMG----IRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCM 499

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           PN  T++ LI   A  GLV++A  +  E+   G
Sbjct: 500 PNESTYTILIEGLAYEGLVKEAREMMAELCSRG 532


>gi|298712189|emb|CBJ33061.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 531

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 6/184 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           PN Y   ++I VC  CG+  ++  +++++    V ++ + +NS+    A D ++   +  
Sbjct: 321 PNTYSYGSVITVCATCGEVDQAVGLFDEMPEAGVKVDAFTYNSVAMAYARDGRWRQAIST 380

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
             +M +LG + D+ SY   ++AC  AG    A  +  E++  E KGV K +  T++  + 
Sbjct: 381 LSDMSELGHVGDVVSYTAAIRACGWAGECDRALSLLREMR--EEKGV-KPNEKTFAAAIS 437

Query: 372 VFADAKWWQMALKVKEDM-LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                  W+  L++  +M  S G  P+   ++S I AC   G  EQA  L  E    G  
Sbjct: 438 ACGHGGRWERGLELLSEMPRSTGFLPDADCYTSAIKACGKGGQWEQAFTLLREAAAEGTT 497

Query: 431 PNSQ 434
           P+++
Sbjct: 498 PDAK 501



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/478 (20%), Positives = 187/478 (39%), Gaps = 99/478 (20%)

Query: 102 GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNE 161
           G   ++ + L+     + I    R  R +  + +L+ +  +G+ P    DG  +      
Sbjct: 62  GEAREWGTELNEVSYNTAISACARRDRFEEALRLLRDMPSVGLVP----DGWSYGATLGA 117

Query: 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD 221
           C     +G+    + L+  +EE  +     + +  +   C +K   N     A ++ R++
Sbjct: 118 CA---GTGQASTALRLLREMEERGIEATASNYKHALYACCDSKTGENWEA-AAALLRRSE 173

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
            L  NF   +G+                            +I  C   G + K+  +  +
Sbjct: 174 TLRNNFF--YGR----------------------------VIMACRRAGQWQKALEVLRE 203

Query: 282 LRSQNVTLNIYVFNSLMNVN-----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           +    +  +I+ ++++++V          K   ++ +   K GV   + SYN++L AC  
Sbjct: 204 MSRVGLAPDIFCYDTVISVACMSSVGAQWKIARDLLREQAKTGVPCSLISYNLVLSACKK 263

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML--SAGV 394
           AG    A  +   ++ +   G    DV +Y+T +      + W++AL V  DM    + +
Sbjct: 264 AGRPRQAVSL---LRAMRGHGC-SPDVISYNTAISACVKRREWELALFVLRDMQRPDSRL 319

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PNT ++ S+I  CA  G V+QA+ LF+EM +AG +             V+A  ++    
Sbjct: 320 EPNTYSYGSVITVCATCGEVDQAVGLFDEMPEAGVK-------------VDAFTYN---- 362

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
                      VA+    DG          + +Q+I+   +     H             
Sbjct: 363 ----------SVAMAYARDG----------RWRQAISTLSDMSELGHVGD---------- 392

Query: 515 TTTYNILMKAC--CTDYYRVKALMNEMRT-VGLSPNHISWTILIDACGGSGNVEGALQ 569
             +Y   ++AC    +  R  +L+ EMR   G+ PN  ++   I ACG  G  E  L+
Sbjct: 393 VVSYTAAIRACGWAGECDRALSLLREMREEKGVKPNEKTFAAAISACGHGGRWERGLE 450



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 93/200 (46%), Gaps = 9/200 (4%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLG 319
           ++  C   G   ++ ++   +R    + ++  +N+ ++  V   + +  L V ++MQ+  
Sbjct: 257 VLSACKKAGRPRQAVSLLRAMRGHGCSPDVISYNTAISACVKRREWELALFVLRDMQRPD 316

Query: 320 --VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
             +  +  SY  ++  C   G    A  ++ E+     +  +K+D FTY+++   +A   
Sbjct: 317 SRLEPNTYSYGSVITVCATCGEVDQAVGLFDEMP----EAGVKVDAFTYNSVAMAYARDG 372

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML-QAGCEPNSQCC 436
            W+ A+    DM   G   + +++++ I AC  AG  ++A+ L  EM  + G +PN +  
Sbjct: 373 RWRQAISTLSDMSELGHVGDVVSYTAAIRACGWAGECDRALSLLREMREEKGVKPNEKTF 432

Query: 437 NILLQACVEACQFDRAFRLF 456
              + AC    +++R   L 
Sbjct: 433 AAAISACGHGGRWERGLELL 452



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 121/309 (39%), Gaps = 80/309 (25%)

Query: 303 HDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
           H L++   L +  +++ LG+  ++ S +  L AC  AG      E+ GE +    +    
Sbjct: 15  HSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQWQRCLELLGEAREWGTE---- 70

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
           L+  +Y+T +   A    ++ AL++  DM S G+ P+  ++ + + ACA  G    A+ L
Sbjct: 71  LNEVSYNTAISACARRDRFEEALRLLRDMPSVGLVPDGWSYGATLGACAGTGQASTALRL 130

Query: 421 FEEMLQAGCEPNSQ--------CCNI---------------------------LLQACVE 445
             EM + G E  +         CC+                            ++ AC  
Sbjct: 131 LREMEERGIEATASNYKHALYACCDSKTGENWEAAAALLRRSETLRNNFFYGRVIMACRR 190

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGED---YD-----------GNTDRISNMEHKDKQSIT 491
           A Q+ +A  + R      ++V L  D   YD           G   +I+  +   +Q+ T
Sbjct: 191 AGQWQKALEVLR----EMSRVGLAPDIFCYDTVISVACMSSVGAQWKIAR-DLLREQAKT 245

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHI 549
             P                   +  +YN+++ AC       +  +L+  MR  G SP+ I
Sbjct: 246 GVPC------------------SLISYNLVLSACKKAGRPRQAVSLLRAMRGHGCSPDVI 287

Query: 550 SWTILIDAC 558
           S+   I AC
Sbjct: 288 SYNTAISAC 296



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 28/221 (12%)

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y T +     +  W+ AL +   + + G+TPN  + S+ +NAC  AG  ++ + L  E 
Sbjct: 5   SYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQWQRCLELLGEA 64

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFR----------SWTLSKTQVALGEDYDG 474
            + G E N    N  + AC    +F+ A RL R           W+   T  A       
Sbjct: 65  REWGTELNEVSYNTAISACARRDRFEEALRLLRDMPSVGLVPDGWSYGATLGACAGTGQA 124

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS---------FKPTTTT-----YNI 520
           +T  +  +   +++ I  T +   ++ Y+  D +            + + T      Y  
Sbjct: 125 STA-LRLLREMEERGIEATASNYKHALYACCDSKTGENWEAAAALLRRSETLRNNFFYGR 183

Query: 521 LMKAC--CTDYYRVKALMNEMRTVGLSPNHISW-TILIDAC 558
           ++ AC     + +   ++ EM  VGL+P+   + T++  AC
Sbjct: 184 VIMACRRAGQWQKALEVLREMSRVGLAPDIFCYDTVISVAC 224


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 46/268 (17%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNV 287
           + GK    V  L+  D   K    P++ I  TIID  G+C D + S A  I+ +++ + V
Sbjct: 201 KIGKTTVAVGLLKKMD---KAGGRPDIVIYNTIID--GLCKDRLVSEALDIFSEIKGKGV 255

Query: 288 TLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             +++ ++ LM+   N+   +    ++  M  L +M D+ ++NIL+   C  G   +  E
Sbjct: 256 RPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEG---MLSE 312

Query: 346 IYGEVKHLEAKGV---------------LKLDVF-------------------TYSTIVK 371
             G +K +  KGV               L+  VF                   +Y+ ++ 
Sbjct: 313 AQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILIN 372

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +  A+    A ++ ++M   G+ PNT  +++LI+    AG   +A  LF++M   GC P
Sbjct: 373 GYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSP 432

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSW 459
           +   C ILL +  +    D A RLFR+ 
Sbjct: 433 DLVTCTILLDSLCKLGYLDNALRLFRAM 460



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 116/272 (42%), Gaps = 20/272 (7%)

Query: 290 NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +++ FN L+N       + F   V   + KLG   D  +++ L+   C       A E +
Sbjct: 118 DVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFF 177

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            E   + A G  + ++ TY+TI+K F       +A+ + + M  AG  P+ + ++++I+ 
Sbjct: 178 DE---MVASGY-QPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDG 233

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
                LV +A+ +F E+   G  P+    +IL+     + Q + A  LF    +S   + 
Sbjct: 234 LCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEM-MSLNIMP 292

Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC- 526
               ++   D++       K+ + +    +              +P   TYN LM   C 
Sbjct: 293 DVVTFNILVDKLC------KEGMLSEAQGIIKIMIEK-----GVEPNYATYNSLMNGYCL 341

Query: 527 -TDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
               +  + + + M T G  PN +S+ ILI+ 
Sbjct: 342 QNKVFEARMVFDAMITKGCMPNVVSYNILING 373



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 8/179 (4%)

Query: 268 ICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMAD 323
           +C + M S A  I + +  + V  N   +NSLMN      K      V+  M   G M +
Sbjct: 304 LCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPN 363

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           + SYNIL+   C A     A+E++ E   +  +G++  + F Y+T++     A     A 
Sbjct: 364 VVSYNILINGYCKAQRIDEARELFDE---MSFRGLIP-NTFNYNTLISGLCQAGRHCEAR 419

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           ++ +DM + G +P+ +T + L+++    G ++ A+ LF  M  +  +PN    +IL++A
Sbjct: 420 ELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRA 478



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 33/223 (14%)

Query: 347 YGEVKHLEAKGVL---KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
           YG V  L  +  L   + DVF ++ ++  F+  +    A  V   ++  G  P+ +T+SS
Sbjct: 100 YGTVLSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSS 159

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           LIN         +AM  F+EM+ +G +PN    N +++   +               + K
Sbjct: 160 LINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCK---------------IGK 204

Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNT--PNFVPNSHYSSFDKRFS------FKPTT 515
           T VA+G        ++     +    I NT       +   S     FS       +P  
Sbjct: 205 TTVAVGL-----LKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDV 259

Query: 516 TTYNILMKACCTDYYR--VKALMNEMRTVGLSPNHISWTILID 556
            TY+ILM   C    +    AL NEM ++ + P+ +++ IL+D
Sbjct: 260 FTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVD 302


>gi|242063722|ref|XP_002453150.1| hypothetical protein SORBIDRAFT_04g000850 [Sorghum bicolor]
 gi|241932981|gb|EES06126.1| hypothetical protein SORBIDRAFT_04g000850 [Sorghum bicolor]
          Length = 757

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 4/148 (2%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +++++ M  LGV     SYN +LKA    G   +A+ IY     + A GV   DV TY+T
Sbjct: 201 VKLFRMMPDLGVPRTALSYNAVLKAILCRGREAMARRIYNA---MIADGVAP-DVSTYNT 256

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F   K  + A++V  +M   GVTP+  T+++L+NA    G +E A  +F+EM   G
Sbjct: 257 LIWGFGLCKKMETAVRVFGEMKGHGVTPDVTTYNALLNAWVRTGDLESARKVFDEMTGKG 316

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
            E NS   N++++  VE  + + A  LF
Sbjct: 317 IERNSVSYNVMIKGYVEGNRVEEAVALF 344



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 89/191 (46%), Gaps = 8/191 (4%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A R Y+A      +P++    T+I   G+C     +  ++ +++   VT ++  +N+L+N
Sbjct: 235 ARRIYNAMIADGVAPDVSTYNTLIWGFGLCKKMETAVRVFGEMKGHGVTPDVTTYNALLN 294

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
             V   DL+   +V+  M   G+  +  SYN+++K   + GN V  +E       +  KG
Sbjct: 295 AWVRTGDLESARKVFDEMTGKGIERNSVSYNVMIKG-YVEGNRV--EEAVALFAEMGEKG 351

Query: 358 VLKLDVFTYSTIVKVFADAKWWQM-ALKVKEDMLSAGVTP-NTITWSSLINACANAGLVE 415
            L+L   T++ ++    D +     A K  +DM    +TP +   +  L+     AG ++
Sbjct: 352 -LRLSEKTFAALMPGLCDDQGRAAEARKAVDDMAERRLTPKDKSVFLRLVTTLCKAGDLD 410

Query: 416 QAMHLFEEMLQ 426
            A+ +  +  Q
Sbjct: 411 GALEVHRKSGQ 421


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 4/144 (2%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           LEV K M + G+   + +YNILLK    AG    A E + ++K  E    +++DV TY+T
Sbjct: 237 LEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKERE----VEIDVVTYTT 292

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +V  F      + A KV  +M+  G+ P+T T++++I        VE A+ +FEEM++ G
Sbjct: 293 MVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKG 352

Query: 429 CEPNSQCCNILLQACVEACQFDRA 452
             PN    N++++    A   D+A
Sbjct: 353 YVPNLTTYNVVIRGLFHAGNMDKA 376



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 86/176 (48%), Gaps = 7/176 (3%)

Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMAS 326
            G   ++   +  ++ + V +++  + ++++      ++K   +V+  M   G++   A+
Sbjct: 265 AGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTAT 324

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN +++  C   +   A  ++ E   +  KG +  ++ TY+ +++    A     A++  
Sbjct: 325 YNAMIQVLCKKDSVENAVLMFEE---MVKKGYVP-NLTTYNVVIRGLFHAGNMDKAMEFI 380

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           E M + G  PN  T++  I    +AG VE+ + +FE+M Q G  PN    N+L+ A
Sbjct: 381 ERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQ-GSLPNLDTYNVLISA 435


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 126/314 (40%), Gaps = 44/314 (14%)

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNI 329
           Y+   ++++  +S  VT N+   N L+N   H   + F   V+ N+ K G   D  + N 
Sbjct: 109 YLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSVFANILKRGYHPDAITLNT 168

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           L+K  C  G    A   + +V    A+G  +LD  +Y T++     A   +   ++   +
Sbjct: 169 LIKGLCFCGEIKRALYFHDKV---VAQG-FQLDQVSYGTLINGLCKAGETKAVARLLRKL 224

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
               V P+ + ++++I+       V  A  L+ EM+  G  PN    N L+         
Sbjct: 225 EGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNL 284

Query: 450 DRAFRLFRS----------WTLSKTQVALGED--YDGNTDRISNMEHKDKQSITNTPNFV 497
             AF L             +T +    ALG++   D        M+HK         N  
Sbjct: 285 KEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHK---------NMF 335

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILI 555
           PN                 TY  L+   C +++  R  AL  +M+  G+ P+  S+TIL+
Sbjct: 336 PN---------------IVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILL 380

Query: 556 DACGGSGNVEGALQ 569
           DA    G +E A Q
Sbjct: 381 DALCKGGRLENAKQ 394



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 100/207 (48%), Gaps = 6/207 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           SPN++   T+I    I G+  ++ ++  +++ +N+  ++Y FN L++    + K    + 
Sbjct: 265 SPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAIS 324

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +++ M+   +  ++ +Y  L+   C   N  L + I    K ++ +G+ + DV++Y+ ++
Sbjct: 325 LFEEMKHKNMFPNIVTYTSLIDGLC--KNHHLERAI-ALCKKMKEQGI-QPDVYSYTILL 380

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                    + A +  + +L  G   N  T++ +IN    AGL    M L  +M   GC 
Sbjct: 381 DALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCM 440

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFR 457
           P++     ++ A  E  + D+A +  R
Sbjct: 441 PDAITFKTIICALFEKDENDKAEKFLR 467



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 75/148 (50%), Gaps = 4/148 (2%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++Y  M   G+  ++ +YN L+   C+ GN    +E +  +  ++ K +   DV+T++ +
Sbjct: 254 DLYSEMIVKGISPNVFTYNTLIYGFCIMGNL---KEAFSLLNEMKLKNI-NPDVYTFNIL 309

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A+ + E+M    + PN +T++SLI+       +E+A+ L ++M + G 
Sbjct: 310 IDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGI 369

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFR 457
           +P+     ILL A  +  + + A + F+
Sbjct: 370 QPDVYSYTILLDALCKGGRLENAKQFFQ 397



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 6/204 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P+     T+I     CG+  ++   ++ + +Q   L+   + +L+N    A + K    +
Sbjct: 161 PDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARL 220

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + ++   V  D+  Y  ++   C       A ++Y E   +  KG+   +VFTY+T++ 
Sbjct: 221 LRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSE---MIVKGI-SPNVFTYNTLIY 276

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F      + A  +  +M    + P+  T++ LI+A    G +++A+ LFEEM      P
Sbjct: 277 GFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFP 336

Query: 432 NSQCCNILLQACVEACQFDRAFRL 455
           N      L+    +    +RA  L
Sbjct: 337 NIVTYTSLIDGLCKNHHLERAIAL 360


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 145/312 (46%), Gaps = 26/312 (8%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV 320
           + G C  G+ MK+  ++++LRS  +   I  +N+L++      +L+   ++   M   G+
Sbjct: 381 IYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI 440

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             D+ +Y IL+   C  G+  +AQE + E+ H   +G L+LD + Y+T  ++  + K   
Sbjct: 441 APDIVTYTILVNGSCKMGSLSMAQEFFDEMLH---EG-LELDSYAYAT--RIVGELKLGD 494

Query: 381 M--ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A  ++E+ML+ G  P+ I ++ +++     G +E+A  L ++M+  G  P+      
Sbjct: 495 TSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTS 554

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           ++ A +E  +  +   +F    LSK     G      T  +    H  K  +     F+ 
Sbjct: 555 IIHAHLENGRLRKGREIFYE-MLSK-----GLTPSVVTYTVLIHGHAGKGRLERA--FI- 605

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILID 556
             ++S   ++    P   TYN L+   C      +A     EM   G+ PN  S+TILI+
Sbjct: 606 --YFSEMQEK-GILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILIN 662

Query: 557 ACGGSGNVEGAL 568
                GN + AL
Sbjct: 663 ENCNMGNWQEAL 674



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 114/265 (43%), Gaps = 46/265 (17%)

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           ++ D+ SYN L+   C  GN + A  ++ E++ +     L   + TY+T++         
Sbjct: 370 LLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSI----YLFPTIVTYNTLLDGLCRQGEL 425

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           ++A ++K +M++ G+ P+ +T++ L+N     G +  A   F+EML  G E +S      
Sbjct: 426 EVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATR 485

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD--------------GNTDRISNMEHK 485
           +   ++     RAF      +L +  +A G   D              GN +  S +  K
Sbjct: 486 IVGELKLGDTSRAF------SLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQK 539

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVG 543
              S    P++V                   TY  ++ A   +    + + +  EM + G
Sbjct: 540 -MVSDGVIPDYV-------------------TYTSIIHAHLENGRLRKGREIFYEMLSKG 579

Query: 544 LSPNHISWTILIDACGGSGNVEGAL 568
           L+P+ +++T+LI    G G +E A 
Sbjct: 580 LTPSVVTYTVLIHGHAGKGRLERAF 604



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 105/215 (48%), Gaps = 13/215 (6%)

Query: 242 RAYDASKKHLSS---PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           RA+   ++ L+    P++ I   ++D  G+C  G+  ++  + + + S  V  +   + S
Sbjct: 497 RAFSLQEEMLAKGFPPDLIIYNVVVD--GLCKLGNLEEASELLQKMVSDGVIPDYVTYTS 554

Query: 297 LMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           +++ +  +  L+   E++  M   G+   + +Y +L+      G    A   + E   ++
Sbjct: 555 IIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSE---MQ 611

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            KG+L  +V TY++++      +    A     +M+  G+ PN  +++ LIN   N G  
Sbjct: 612 EKGILP-NVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNW 670

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
           ++A+ L+++ML  G +P+S   + LL+   + C+ 
Sbjct: 671 QEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKL 705



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD  ++ ++ E++ ++    ++ ++N +++      +L+   E+ + M   GV+ D  +Y
Sbjct: 493 GDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTY 552

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             ++ A    G     +EI+ E   + +KG L   V TY+ ++   A     + A     
Sbjct: 553 TSIIHAHLENGRLRKGREIFYE---MLSKG-LTPSVVTYTVLIHGHAGKGRLERAFIYFS 608

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M   G+ PN IT++SLIN       ++QA + F EM++ G  PN     IL+       
Sbjct: 609 EMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMG 668

Query: 448 QFDRAFRLFR 457
            +  A  L++
Sbjct: 669 NWQEALSLYK 678



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 109/267 (40%), Gaps = 22/267 (8%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L V+  M K  +  D+ + N +L+   L    ++++ +  EV     +  +K  + TY+T
Sbjct: 184 LSVFDKMIKSRLSPDVKNCNRILR--ILRDKDLMSKAV--EVYRTMGEFGIKPTIVTYNT 239

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  +      Q  L +  +M   G  PN +T++ LIN  +  G  EQA  L  EML+ G
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTL--SKTQVALGEDYDGNTDRISNMEHKD 486
            + ++   N L+           A  L     L  +   VA    +     ++  M    
Sbjct: 300 LKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAM 359

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGL 544
           +Q      N              +  P   +YN L+   C     +KA  L +E+R++ L
Sbjct: 360 QQLSDMLAN--------------NLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYL 405

Query: 545 SPNHISWTILIDACGGSGNVEGALQCR 571
            P  +++  L+D     G +E A Q +
Sbjct: 406 FPTIVTYNTLLDGLCRQGELEVAQQLK 432


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 140/320 (43%), Gaps = 35/320 (10%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E +R      +++    L+N    A       +VYK M ++GV+ ++  +N+L+ ACC
Sbjct: 149 VFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACC 208

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +G+   A+++  E   +E++ +   D+FTY+T++ ++        AL +++ M   GV+
Sbjct: 209 KSGDVEKAEQLLNE---MESRFIFP-DLFTYNTLISLYCKKGMHYEALGIQDRMERGGVS 264

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +T++SLI      G + +A+ LF E+   G  PN      L+         + A RL
Sbjct: 265 PDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRL 322

Query: 456 FRSWTLSKTQVAL-------------GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
                +      +             G+  D N   ++ M  +  +    T N + N++ 
Sbjct: 323 REVMEVEGLHPGVVTYNSILRKLCEEGKIKDANR-LLNEMSERKVEPDNVTCNTLINAYC 381

Query: 503 SSFD--------KRF---SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549
              D        K+      KP   T+  L+   C   +    K  + EM   G SP++ 
Sbjct: 382 KIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYS 441

Query: 550 SWTILIDACGGSGNVEGALQ 569
           +++ L+D+     N E  ++
Sbjct: 442 TYSWLVDSYYDQDNKEAVIR 461



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 94/191 (49%), Gaps = 8/191 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD-LKF-TLEV 311
           PN++I   +I  C   GD  K+  +  ++ S+ +  +++ +N+L+++     + +  L +
Sbjct: 195 PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGI 254

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M++ GV  D+ +YN L+   C  G    A  ++ E+       V      TY+T++ 
Sbjct: 255 QDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGATPNHV------TYTTLID 308

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +      + AL+++E M   G+ P  +T++S++      G ++ A  L  EM +   EP
Sbjct: 309 GYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEP 368

Query: 432 NSQCCNILLQA 442
           ++  CN L+ A
Sbjct: 369 DNVTCNTLINA 379



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 24/211 (11%)

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           S +V  +A+++  Q A++V E M   G  P+    + L+N+ A A L      ++++M++
Sbjct: 131 SWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVR 190

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G  PN    N+L+ AC ++   ++A +L       +++    + +  NT  IS    K 
Sbjct: 191 VGVVPNIHIFNVLIHACCKSGDVEKAEQLLNE---MESRFIFPDLFTYNT-LISLYCKK- 245

Query: 487 KQSITNTPNFVPNSHYSSFD-----KRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRT 541
                         HY +       +R    P   TYN L+   C +  R++  +   R 
Sbjct: 246 ------------GMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCRE-GRMREALRLFRE 292

Query: 542 V-GLSPNHISWTILIDACGGSGNVEGALQCR 571
           + G +PNH+++T LID      ++E AL+ R
Sbjct: 293 INGATPNHVTYTTLIDGYCRVNDLEEALRLR 323



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 8/204 (3%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           + KK     AL   D  ++   SP++    ++I   G C +     A+         T N
Sbjct: 242 YCKKGMHYEALGIQDRMERGGVSPDIVTYNSLI--YGFCREGRMREALRLFREINGATPN 299

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
              + +L++     +DL+  L + + M+  G+   + +YN +L+  C  G    A  +  
Sbjct: 300 HVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLN 359

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E+   + +     D  T +T++  +        A+KVK+ ML AG+ P+  T+ +LI+  
Sbjct: 360 EMSERKVEP----DNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGF 415

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPN 432
                V+ A     EML AG  P+
Sbjct: 416 CKLHEVDSAKEFLFEMLDAGFSPS 439



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 104/238 (43%), Gaps = 16/238 (6%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYE 280
           L   F RE G+ R+ +   R  + +     +PN     T+ID  G C   D  ++  + E
Sbjct: 273 LIYGFCRE-GRMREALRLFREINGA-----TPNHVTYTTLID--GYCRVNDLEEALRLRE 324

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +  + +   +  +NS++        +K    +   M +  V  D  + N L+ A C  G
Sbjct: 325 VMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIG 384

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           +   A ++  + K LEA   LK D FT+  ++  F        A +   +ML AG +P+ 
Sbjct: 385 DMGSAMKV--KKKMLEAG--LKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSY 440

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            T+S L+++  +    E  + L +E+ + G   +      L++   +  + + A R+F
Sbjct: 441 STYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIF 498


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 129/318 (40%), Gaps = 36/318 (11%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTL 309
           S P ++    +ID     GD   +  ++E+++ + +  +   +NS+++       L  T+
Sbjct: 129 SKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTV 188

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
             ++ M+ +    D+ +YN L+   C  G      E + E+K    +  LK +V +YST+
Sbjct: 189 YFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMK----QSGLKPNVVSYSTL 244

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           V  F      Q ALK   DM   G+ PN  T++SL++A    G +  A  L +EM Q G 
Sbjct: 245 VDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGV 304

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTL--------SKTQVALGEDYDGNTDRISN 481
           E N      L+    +  +   A  LF             S T +  G     N DR   
Sbjct: 305 EWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRA-- 362

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEM 539
           +E  D+                   K    KP    Y   + + C        K +MNEM
Sbjct: 363 LELLDEM------------------KGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEM 404

Query: 540 RTVGLSPNHISWTILIDA 557
           +  G+  N   +T L+DA
Sbjct: 405 QEKGIKANTFIYTTLMDA 422



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 108/226 (47%), Gaps = 6/226 (2%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K+ D+ +A   ++  K     P+     ++ID  G  G    +   +E+++S +   ++ 
Sbjct: 145 KEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVI 204

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +N+L+N       L   LE ++ M++ G+  ++ SY+ L+ A C       A + Y ++
Sbjct: 205 TYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDM 264

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + L     L  +  TY+++V  +        A ++ ++M   GV  N +T+++LI+   +
Sbjct: 265 RRLG----LVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCD 320

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
              +++A  LF +M+ AG  PN      L+   V+A   DRA  L 
Sbjct: 321 VERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELL 366



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 111/281 (39%), Gaps = 55/281 (19%)

Query: 293 VFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           VF++L +V   +  F   L+ +  M++  V     S N LL      G T   +  +   
Sbjct: 65  VFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFF--- 121

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K +   G  K  VFTY+ ++         + A  + E+M   G+ P+T+T++S+I+    
Sbjct: 122 KDMIGAGS-KPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G ++  ++ FEEM    CEP+    N L+    +  +  +    FR             
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREM----------- 229

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
                           KQS                      KP   +Y+ L+ A C +  
Sbjct: 230 ----------------KQS--------------------GLKPNVVSYSTLVDAFCKEDM 253

Query: 531 RVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             +AL    +MR +GL PN  ++T L+DA    GN+  A +
Sbjct: 254 MQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFR 294



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 113/224 (50%), Gaps = 7/224 (3%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +++  ++P   + + + +  +GK   L   +  ++  K     P++    T+I+     G
Sbjct: 159 MKFRGLIPDT-VTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFG 217

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYN 328
              K    + +++   +  N+  +++L++    +  ++  L+ Y +M++LG++ +  +Y 
Sbjct: 218 KLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYT 277

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            L+ A C  GN   A  +  E+  +   GV + +V TY+ ++    D +  + A ++   
Sbjct: 278 SLVDAYCKIGNLSDAFRLADEMSQV---GV-EWNVVTYTALIDGLCDVERIKEAEELFGK 333

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           M++AGV PN  ++++LI+    A  +++A+ L +EM   G +P+
Sbjct: 334 MVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPD 377



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 86/188 (45%), Gaps = 6/188 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   V  F K+  +  AL+ Y   ++    PN +   +++D     G+   +  + ++
Sbjct: 239 VSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADE 298

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    V  N+  + +L++   +   +K   E++  M   GV+ ++ASY  L+     A N
Sbjct: 299 MSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKN 358

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A E+  E+K    +G+ K D+  Y T +      +  + A  V  +M   G+  NT 
Sbjct: 359 MDRALELLDEMK---GRGI-KPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTF 414

Query: 400 TWSSLINA 407
            +++L++A
Sbjct: 415 IYTTLMDA 422



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/214 (18%), Positives = 94/214 (43%), Gaps = 7/214 (3%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII-DVCGICGDYMKSRAIYEDL 282
           +   +  F K +++  AL   D  K     P++ +  T I  +CG+      ++ +  ++
Sbjct: 346 YTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGL-EKIEAAKVVMNEM 404

Query: 283 RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           + + +  N +++ +LM+    + +    L + + M +L +     ++ +L+   C     
Sbjct: 405 QEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLV 464

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A + +G + +      L+ +   Y+ ++         + A  + E M   G+ P+   
Sbjct: 465 SKAIDYFGRISNDFG---LQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTA 521

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           ++SLI+     G V QA+ L ++M + G E  ++
Sbjct: 522 YTSLIDGKLKQGNVVQALALRDKMAEIGVESGAR 555


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 114/268 (42%), Gaps = 42/268 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I++ N VR + +  ++  A R +   K     PN+Y    +ID    CG   ++  ++ +
Sbjct: 247 IVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAE 306

Query: 282 LRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +       N   FN+L+  +V A   +  L+VY  M+++G   D  +YN L+++ C  GN
Sbjct: 307 MLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGN 366

Query: 340 -----TVL------------------------------AQEIYGEVKHLEAKGVLKLDVF 364
                 VL                              A  +Y ++K L+ K     +  
Sbjct: 367 LDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKA----NTV 422

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY+ ++++F D K   M LK+K++M    V PN  T+  LI      G    A   F EM
Sbjct: 423 TYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGHWNNAYKFFREM 482

Query: 425 LQAGC-EPNSQCCNILLQACVEACQFDR 451
           ++  C +P+      +LQ   +A Q  +
Sbjct: 483 VEEKCLKPSLPVYEKVLQQLRKAGQLKK 510



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 126/310 (40%), Gaps = 56/310 (18%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLG 319
           +ID+ G   ++     + + ++++NV ++I  F+ L+   V A      +  +  M+   
Sbjct: 148 MIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRMEDYN 207

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
              D  +++IL+   C       AQ  +  +K        + DV  Y+ +V+ +  A   
Sbjct: 208 CKPDKIAFSILISILCRKRRATEAQSFFDSLK-----DKFEPDVIVYTNLVRGWCRAGNI 262

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
             A +V  +M  AG  PN  T++ +I+A    G + +A  +F EML  GCEPNS   N L
Sbjct: 263 PEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNL 322

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
           L+  V+A + ++  +++                                           
Sbjct: 323 LRVHVKAGRTEKVLQVYNQM---------------------------------------- 342

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDA 557
                  KR    P T TYN L+++ C D    +AL  +N M   G SPN  ++  L  +
Sbjct: 343 -------KRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGS 395

Query: 558 CGGSGNVEGA 567
                +V GA
Sbjct: 396 IAKLRDVNGA 405


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 149/348 (42%), Gaps = 39/348 (11%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMN--VNAHDLKFT 308
           P++ I  T+ID  G+C  G   +   + E +RSQ     +   +N L++    A +++  
Sbjct: 381 PDVVIYNTLID--GLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKG 438

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            E++  M K GV  ++ + N L+   C  G    A   + E +    KG    D  TY+ 
Sbjct: 439 KELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKG----DAVTYTA 494

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F +   ++ A+++  +ML +G +P+ I + +LI+  + AG +  A  +  E+ + G
Sbjct: 495 LINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLG 554

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRIS 480
             P++ C N L+       +F R F + +          T++   +      +G+     
Sbjct: 555 IRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQ 614

Query: 481 NMEHKDKQS----ITNTPNFVPNSH------------YSSFDKRFSFKPTTTTYNILMKA 524
            +  K  ++       T   V N++            +          P T  YNIL+ +
Sbjct: 615 KVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINS 674

Query: 525 CCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            C +  +VK   +LM +M+  G++PN  ++  +        ++E   +
Sbjct: 675 LCKN-NKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFE 721



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 3/148 (2%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           DLKF  +V + M K GV+  +A+Y  ++ A CL GN   A EI+   K ++A   +  + 
Sbjct: 609 DLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIF---KDMKAASKVPPNT 665

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
             Y+ ++         + A+ + EDM   GVTPNT T++++     +   +E+     + 
Sbjct: 666 VIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDR 725

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDR 451
           M++  C P+     IL +      + +R
Sbjct: 726 MIEHACNPDYITMEILTEWLSAVGEIER 753



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 104/235 (44%), Gaps = 14/235 (5%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           FCN V  F K      A+  ++   K   SP+  +  T+I      G    +  +  +L+
Sbjct: 499 FCN-VNNFEK------AMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELK 551

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              +  +   +N+L+       KF    E+ K M++ G+  D  +YN L+      G+  
Sbjct: 552 KLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLK 611

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTPNTIT 400
            AQ++   ++ +   GV+   V TY  ++  +        A+++ +DM +A  V PNT+ 
Sbjct: 612 FAQKV---MRKMIKAGVVP-TVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVI 667

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           ++ LIN+      V+ A+ L E+M   G  PN+   N + +   +    ++ F  
Sbjct: 668 YNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEF 722



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 115/269 (42%), Gaps = 27/269 (10%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +++  M KLG + + A+ N LL      GN     E+  ++  ++    ++ +V T+  +
Sbjct: 291 DLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMD----IQPNVVTFGIL 346

Query: 370 VKVFADAKWWQMALKVKEDM--------LSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +      +    AL+V E M        +S  V P+ + +++LI+     G  ++ + L 
Sbjct: 347 INHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLM 406

Query: 422 EEML-QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
           E M  Q GC P++   N L+    +A + ++   LF    ++K  VA   +       + 
Sbjct: 407 ERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDE--MNKEGVA--PNVVTVNTLVG 462

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNE 538
            M    +  +++  NF   +      +R   K    TY  L+ A C   ++ +   L NE
Sbjct: 463 GMCRTGR--VSSAVNFFVEA------QRRGMKGDAVTYTALINAFCNVNNFEKAMELFNE 514

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGA 567
           M   G SP+ I +  LI     +G +  A
Sbjct: 515 MLKSGCSPDAIVYYTLISGFSQAGRMADA 543


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 6/198 (3%)

Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NA 302
           D+ K    +P++Y   T+I  C     Y ++  ++E++++   + +   +N+L++V   +
Sbjct: 280 DSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKS 339

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
              +  +EV K M+  G    + +YN L+ A    G  +L + +  E+K    K  +K D
Sbjct: 340 RRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDG--LLDEAM--ELKSQMVKKGIKPD 395

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           VFTY+T++  F        A+KV E+M  AG  PN  T+++LI    N G   + M +FE
Sbjct: 396 VFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFE 455

Query: 423 EMLQAGCEPNSQCCNILL 440
           E+    C P+    N LL
Sbjct: 456 EIKICECVPDIVTWNTLL 473



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 133/311 (42%), Gaps = 56/311 (18%)

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNM 315
           +   II V G  G    + ++  DLR+  V ++IY + SL+   A + ++   + V+K +
Sbjct: 187 VVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKL 246

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           ++ G    + +YN++L      G  +   +I G V  +++ GV   D++TY+T++     
Sbjct: 247 EEEGCRPTLITYNVILNVYGKMG--MPWSKIAGLVDSMKSSGVAP-DLYTYNTLISSCRR 303

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
              ++ A +V E+M +AG +P+ +T+++L++    +    +AM + +EM  +G  P+   
Sbjct: 304 GSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVT 363

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
            N L+ A       D A  L       K+Q+                    K+ I     
Sbjct: 364 YNSLISAYARDGLLDEAMEL-------KSQMV-------------------KKGI----- 392

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKA---CCTDYYRVKALMNEMRTVGLSPNHISWT 552
                           KP   TY  L+        D Y +K +  EMR  G  PN  ++ 
Sbjct: 393 ----------------KPDVFTYTTLLSGFEKTGKDDYAMK-VFEEMRVAGCQPNICTFN 435

Query: 553 ILIDACGGSGN 563
            LI   G  GN
Sbjct: 436 ALIKMHGNRGN 446



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 153/337 (45%), Gaps = 30/337 (8%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A++ ++  +     PN+     +I + G  G++++   ++E+++      +I  +N+L+ 
Sbjct: 415 AMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLA 474

Query: 300 V---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           V   N  D + +  V+K M++ G + +  ++N L+ A    G    A  IY   + +   
Sbjct: 475 VFGQNGMDSEVS-GVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIY---RRMLDA 530

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           GV   D+ TY+ ++   A    W+ + KV  +M      PN +T+ SL++A AN   VE+
Sbjct: 531 GVTP-DLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVER 589

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEA---CQFDRAFRLFRSWTLSKTQVALGEDYD 473
              L EE+     EP +     L+    ++    + +RAF   R    S     L     
Sbjct: 590 MSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNA--- 646

Query: 474 GNTDRISNMEHKDKQSITNTP-NFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYY- 530
                +S    +   S TN   NF+ +S          F P+ TTYN LM     T+++ 
Sbjct: 647 ----MVSIYGRRRMVSKTNEILNFIKDS---------GFTPSLTTYNSLMYMYSRTEHFE 693

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           + + ++ E+   G+ P+ IS+  +I A   +G ++ A
Sbjct: 694 KSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEA 730



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
           Y+ I+    +L    V  + K   L    RA+   ++   SP++     ++ + G     
Sbjct: 598 YSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMV 657

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNIL 330
            K+  I   ++    T ++  +NSLM + +    F  + ++ + +   G+  D+ S+N +
Sbjct: 658 SKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTV 717

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           + A C  G    A  I+ E+K       L  DV TY+T +  +A    +  A+ V + M+
Sbjct: 718 IFAYCRNGRMKEASRIFAEMKDFG----LAPDVITYNTFIASYASDSMFIEAIDVVKYMI 773

Query: 391 SAGVTPNTITWSSLIN 406
                PN  T++SLI+
Sbjct: 774 KNECKPNQNTYNSLID 789



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/224 (19%), Positives = 109/224 (48%), Gaps = 10/224 (4%)

Query: 221 DILFCNFVREF--GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           ++ +C+ +  +  GK+ + +SAL     S   +  P   + +T++ V        ++   
Sbjct: 571 ELTYCSLLHAYANGKEVERMSALAEEIYSG--IIEPQAVLLKTLVLVYSKSDLLTETERA 628

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           + +LR Q  + +I   N+++++      +  T E+   ++  G    + +YN L+     
Sbjct: 629 FLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSR 688

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
             +   +++I  E+    AKG +K D+ +++T++  +      + A ++  +M   G+ P
Sbjct: 689 TEHFEKSEDILREII---AKG-MKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAP 744

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           + IT+++ I + A+  +  +A+ + + M++  C+PN    N L+
Sbjct: 745 DVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLI 788


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 108/269 (40%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+ + + G  A +  +NIL+   C  G+  JAQ ++  +     K  L+  V 
Sbjct: 123 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAI----TKWGLRPSVV 178

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  ML++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 179 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEM 238

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  ++                            
Sbjct: 239 LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY---------------------------- 270

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  +   L++EM   
Sbjct: 271 --KQMLSQ-----------------SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVK 311

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ I++T LID C   G+++ A + R
Sbjct: 312 GLKPDKITYTTLIDGCCKEGDLDSAFEHR 340



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 147/357 (41%), Gaps = 33/357 (9%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DJ +F   +  + +   L  A+  Y  +++H        CR +++       +     
Sbjct: 69  RSDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YE++       ++Y FN LM+      D++    V+  + K G+   + SYN L+    
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 189 RLGDL---DEGFRLKSAMLASGV-QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 244

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++LI+     G V+ AM ++++ML     P+    N L+    +     +A  L
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 304

Query: 456 FRSWT---LSKTQVALGEDYDG---NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
               +   L   ++      DG     D  S  EH+ +    N                 
Sbjct: 305 IDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQEN----------------- 347

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
             +     Y  L+   C +   V A  ++ EM +VGL P+  ++T++I+     G+V
Sbjct: 348 -IRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 403



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +  IY+ + SQ+++ ++  +N+L+       DLK   
Sbjct: 245 PNGVTFTTLID--GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 302

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +   M   G+  D  +Y  L+  CC  G+   A E     K +  + + +LD   Y+ +
Sbjct: 303 HLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFE---HRKRMIQENI-RLDEVAYTAL 358

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +MLS G+ P+  T++ +IN     G V +   L +EM + G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGH 418

Query: 430 EPNSQCCNILLQA 442
            P+    N+L+  
Sbjct: 419 VPSVVTYNVLMNG 431



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           SP++    T+I   G+C  GD  ++  + +++  + +  +   + +L++      DL   
Sbjct: 279 SPDLITYNTLI--YGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSA 336

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            E  K M +  +  D  +Y  L+   C  G +V A+++  E+  +     LK D  TY+ 
Sbjct: 337 FEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVG----LKPDARTYTM 392

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
           I+  F          K+ ++M   G  P+ +T++ L+N 
Sbjct: 393 IINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 153/363 (42%), Gaps = 38/363 (10%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA---IYEDLRSQNVTLNIYV 293
           L SA R   +  +   +PN+Y    ++    +C    +  A   + +D+R      N+  
Sbjct: 135 LPSARRLLASMLRDGVAPNVYTYNILVRA--LCARGQREEALGVVGDDMRGAGCAPNVVT 192

Query: 294 FNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L+     A ++     +   M++ GV   + ++N ++   C AG    A++++ E+ 
Sbjct: 193 YNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEM- 251

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
              A+  L  D  +Y+T+V  +  A     AL V  +M   GV P+ +T++SLI+A   A
Sbjct: 252 ---AREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRA 308

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA---- 467
           G +E+A+ L  +M + G   N      L+         D A    +     + Q +    
Sbjct: 309 GNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCY 368

Query: 468 ---------LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK------ 512
                    LG   D   + I  ME K  +    T + + + +    D   +F+      
Sbjct: 369 NVLINGYCKLGR-MDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKML 427

Query: 513 -----PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
                P   TY+ L++  C +     A  L  +M  +GL P+  ++T LID     GNV+
Sbjct: 428 KKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQ 487

Query: 566 GAL 568
            AL
Sbjct: 488 KAL 490



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 131/304 (43%), Gaps = 29/304 (9%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +R +   +    V  N+Y +N L+          +    V  +M+  G   ++ +YN L+
Sbjct: 138 ARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLV 197

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            A C AG    A+ + G ++    +G ++  + T++T+V     A   + A K+ ++M  
Sbjct: 198 AAFCRAGEVDAAERLVGVMR----EGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAR 253

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+TP+ +++++L++    AG + +A+ +F EM Q G  P+      L+ A   A   +R
Sbjct: 254 EGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLER 313

Query: 452 AFRL---FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
           A  L    R   L   +       DG                     F+ ++  +  + R
Sbjct: 314 AVALVGQMRERGLRMNEFTFTALIDGFCRN----------------GFLDDALLAMKEMR 357

Query: 509 -FSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
               +P+   YN+L+   C        + L++EM   G+ P+ ++++ ++      G+ +
Sbjct: 358 ECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTD 417

Query: 566 GALQ 569
            A +
Sbjct: 418 SAFE 421



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 150/384 (39%), Gaps = 76/384 (19%)

Query: 64  RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKS 123
           R  L+     Y  + S   K G L E A+ V + +  +G V    +  SL      I   
Sbjct: 253 REGLTPDGVSYNTLVSGYCKAGCLHE-ALAVFAEMAQKGVVPDVVTFTSL------IHAM 305

Query: 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183
            R G ++  V ++ ++ E G   L + + +   L+   C+                 L++
Sbjct: 306 CRAGNLERAVALVGQMRERG---LRMNEFTFTALIDGFCRN--------------GFLDD 348

Query: 184 FRLPVKELDEEFRIVQLCVNKPDV---NLAIRYACIVPRADILFCNFVREFGKKRDLVSA 240
             L +KE+ E       C  +P V   N+ I   C + R D           + R+L+  
Sbjct: 349 ALLAMKEMRE-------CRIQPSVVCYNVLINGYCKLGRMD-----------EARELIHE 390

Query: 241 LRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           + A          P++    TI+   G C  GD   +  +   +  + V  +   ++SL+
Sbjct: 391 MEAKGMK------PDVVTYSTILS--GYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLI 442

Query: 299 N--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                   L    E+++ M +LG+  D  +Y  L+   C  GN   A  ++ E   +  K
Sbjct: 443 RGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDE---MIKK 499

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA----- 411
           GVL  DV TYS ++   + +   + A ++   +      P+ I + +L++ C  A     
Sbjct: 500 GVLP-DVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSV 558

Query: 412 ----------GLVEQAMHLFEEML 425
                     GL+ QA  +++ ML
Sbjct: 559 VALLKGFSMKGLMNQADKVYQSML 582



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 105/244 (43%), Gaps = 38/244 (15%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           +VP A I + + +R   ++R L  A   ++   +    P+ +   T+ID  G C  G+  
Sbjct: 431 VVPDA-ITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLID--GHCKEGNVQ 487

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--------VNAHDLKFTL----EVYKNMQKLGVM 321
           K+ ++++++  + V  ++  ++ L++          A  L F L     V  N++   +M
Sbjct: 488 KALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALM 547

Query: 322 -----ADMASYNILLKACCLAGNTVLAQEIYGEV--KHLEAKGVLKLDVFTYSTIVKVFA 374
                A+  S   LLK   + G    A ++Y  +  +H       KLD   YS ++    
Sbjct: 548 HCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHW------KLDGSVYSVLIHGHC 601

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                  AL   + +L  G +PN+ +  SL+      G+  +A ++ +E+L         
Sbjct: 602 RGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELL--------N 653

Query: 435 CCNI 438
           CC++
Sbjct: 654 CCSL 657


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 4/190 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P+M+    IID     G    +  +   +    V  N Y++  +M+  V +  L+  LE+
Sbjct: 371 PDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALEL 430

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y+ + K G++    +YN ++ A C       A E+  E++    K  L+  + TYS I+ 
Sbjct: 431 YQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQR--RKEELEPSIVTYSMIIH 488

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                   + A  +  +M+  GV P+  T++SLI   A AG V +AM L EEML+AG  P
Sbjct: 489 GLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFP 548

Query: 432 NSQCCNILLQ 441
           +      L+Q
Sbjct: 549 DDHTYGTLVQ 558



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 143/348 (41%), Gaps = 36/348 (10%)

Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNI 291
           +RDL  A+  +++   +   P ++    ++D  G+C  +   RA  ++E++  +    +I
Sbjct: 176 RRDLDKAVSYFNSVSPNKCEPTLFTYTVLVD--GLCKAHKVERACDVFEEMIRKGYKPDI 233

Query: 292 YVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             ++SL++    A  +    ++   M   G      +Y  ++   C  G     QE    
Sbjct: 234 IAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRI---QEAVKT 290

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           ++ +  +  L+  V TYS IV  +      + A  V E+M      P+TI+++  I A  
Sbjct: 291 IQEMRRR-RLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALY 349

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEA--CQFDRAFRLFRSWTLSKTQV 466
           + G  E+A  +FE M++ GC+P+     I++   C E          RL     +   + 
Sbjct: 350 SIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRY 409

Query: 467 ALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
                 DG   + R+       ++ + +                    P+T TYN ++ A
Sbjct: 410 IYTMIMDGFVKSSRLEEALELYQRILKD-----------------GILPSTVTYNTVINA 452

Query: 525 CCTDYYRVKA--LMNEM--RTVGLSPNHISWTILIDACGGSGNVEGAL 568
            C      +A  L+ EM  R   L P+ ++++++I   G  G  E A 
Sbjct: 453 LCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAF 500



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 41/184 (22%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V++ M + G   DM +Y I++   C  G+   A  +      L  K  +K + + Y+ I
Sbjct: 359 KVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVL----RLMDKAAVKPNRYIYTMI 414

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITW---------------------------- 401
           +  F  +   + AL++ + +L  G+ P+T+T+                            
Sbjct: 415 MDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKE 474

Query: 402 ---------SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
                    S +I+     G+ E+A  L  EM+  G  P+      L+Q    A +  RA
Sbjct: 475 ELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRA 534

Query: 453 FRLF 456
             L 
Sbjct: 535 MELL 538



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 58/323 (17%), Positives = 127/323 (39%), Gaps = 20/323 (6%)

Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFT 308
           +S PN+     ++       D+    A+  +++S+ +T N      +++      DL   
Sbjct: 123 ISEPNVSSFNILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKA 182

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +  + ++        + +Y +L+   C A     A +++ E+     KG  K D+  YS+
Sbjct: 183 VSYFNSVSPNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIR---KG-YKPDIIAYSS 238

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++   + A     A K+ + M++ G  P  + ++S++      G +++A+   +EM +  
Sbjct: 239 LIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRR 298

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
             P     + ++   +   + ++AF +               D D   D IS     +  
Sbjct: 299 LRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMA----------DRDCAPDTISYTMFIEAL 348

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
                         +  +K    KP   TY I++   C +     A  ++  M    + P
Sbjct: 349 YSIGRREEAEKVFETMVEK--GCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKP 406

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
           N   +T+++D    S  +E AL+
Sbjct: 407 NRYIYTMIMDGFVKSSRLEEALE 429


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 38/372 (10%)

Query: 219 RADILFCNF-VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDYMKSR 276
           R DI+  N  +  +G+KR L  A  AY A  +    P       ++   CG  G   ++ 
Sbjct: 169 RPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCG-SGQLHRAE 227

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            +  +++   +     V+N+ ++  + A   +  +EVY+ M+K     +  +Y +++   
Sbjct: 228 GVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVY 287

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
             A   + +  ++ E+K +  K     ++ TY+ +V  FA     + A +V E+M  AG 
Sbjct: 288 GKANQPMSSLRVFREMKSVGCK----PNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH 343

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC---QFDR 451
            P+   +++L+ A + AGL + A  +F  M   GCEP+    NIL+ A   A    + + 
Sbjct: 344 EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEA 403

Query: 452 AFRLFRSWTLSKTQVAL-----GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF- 505
           AF+  +   +  T  +           GN  R   +  +  +S      F  N+  +++ 
Sbjct: 404 AFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYG 463

Query: 506 ------------------DKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLS 545
                             D   +  P T+TYN+++ A     Y  R++A    +   GL+
Sbjct: 464 RAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLA 523

Query: 546 PNHISWTILIDA 557
            + ++WT  I A
Sbjct: 524 ADVVTWTSRIGA 535



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 92/199 (46%), Gaps = 2/199 (1%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLG 319
           ++D  G  G + ++ A +++L+ Q +   +     L++ +A   ++    EV   + K G
Sbjct: 388 LVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSG 447

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           +  D  + N +L A   AG     + ++  ++  +       D  TY+ +V  +  A + 
Sbjct: 448 LRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAGYL 507

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
                    + + G+  + +TW+S I A A      Q + +FEEM+ AGC P++    +L
Sbjct: 508 DRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVL 567

Query: 440 LQACVEACQFDRAFRLFRS 458
           L AC +  Q ++   + RS
Sbjct: 568 LAACSDERQVEQVKAIVRS 586



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 10/204 (4%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            V  FG+      A  A+   K+    P M     ++      G+  +   +   L    
Sbjct: 388 LVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSG 447

Query: 287 VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL-GVMA---DMASYNILLKACCLAGNT 340
           +  + +  N+++N    A  L     ++  M++  G +A   D ++YN+++ A   AG  
Sbjct: 448 LRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAG-- 505

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
                +    + L A+G L  DV T+++ +  +A  K +   L+V E+M+ AG  P+  T
Sbjct: 506 -YLDRMEAAFRSLAARG-LAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGT 563

Query: 401 WSSLINACANAGLVEQAMHLFEEM 424
              L+ AC++   VEQ   +   M
Sbjct: 564 AKVLLAACSDERQVEQVKAIVRSM 587



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 98/253 (38%), Gaps = 42/253 (16%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +Y +LL+A C +G    A+ +  E++    +  +      Y+  +     A+  + A++V
Sbjct: 209 TYALLLRAYCGSGQLHRAEGVISEMQ----RNGIPPTATVYNAYLDGLLKARCSEKAVEV 264

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + M       NT T++ +IN    A     ++ +F EM   GC+PN      L+ A   
Sbjct: 265 YQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAR 324

Query: 446 ACQFDRAFRLFRSWTLSKTQV------ALGEDY------DGNTDRISNMEHKDKQSITNT 493
               ++A  +F     +  +       AL E Y       G ++  S MEH         
Sbjct: 325 EGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEH--------- 375

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISW 551
                             +P   +YNIL+ A      +   +A   E++  G+ P   S 
Sbjct: 376 ---------------MGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSH 420

Query: 552 TILIDACGGSGNV 564
            +L+ A   SGNV
Sbjct: 421 MLLLSAHARSGNV 433



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 20/214 (9%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
            + D+  Y+ ++  +   +    A      +L A   P   T++ L+ A   +G + +A 
Sbjct: 168 FRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAE 227

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478
            +  EM + G  P +   N  L   ++A   ++A  +++     + +         NT+ 
Sbjct: 228 GVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRT--------NTET 279

Query: 479 IS---NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA- 534
            +   N+  K  Q +++   F          K    KP   TY  L+ A   +    KA 
Sbjct: 280 YTLMINVYGKANQPMSSLRVFREM-------KSVGCKPNICTYTALVNAFAREGLCEKAE 332

Query: 535 -LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            +  EM+  G  P+  ++  L++A   +G  +GA
Sbjct: 333 EVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGA 366


>gi|414888269|tpg|DAA64283.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 616

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 153/357 (42%), Gaps = 41/357 (11%)

Query: 224 FCNFVREFGKKRDLVSALRAYD-ASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYE 280
           F    REF ++ D   +LR +    ++    P+ +I   +I V G  G  +  K   ++ 
Sbjct: 106 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFH 165

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDL--KFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           DL +++ T   Y   SL+   A +   +    +   M+  GV    A+YN +L AC  A 
Sbjct: 166 DLPAESRTALSY--TSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARAT 223

Query: 339 NTVLAQE----IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           +  +  +    ++ E++H +A   ++ D+ TY+T++   A       +  +   ML AGV
Sbjct: 224 DPPVPFDMLLGLFAEMRH-DASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGV 282

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           +P+T+++  +++A A+AG + +A  LF EM   G   ++     L++A         A  
Sbjct: 283 SPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVA 342

Query: 455 LFRSW-------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
           + R         T +  +V L  D  G   R   +    ++  T  P             
Sbjct: 343 VLRQMQADGCAPTAATYRVLL--DLYGRQGRFDGVRQLFREMRTAVP------------- 387

Query: 508 RFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
                P T TYN+L +       +  V  L ++M   G+ P+ ++   ++ ACG  G
Sbjct: 388 -----PDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGG 439



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 7/210 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLE 310
           SP+    R I+D     G+  ++  ++ ++ +   T +   +  LM  +         + 
Sbjct: 283 SPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVA 342

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + MQ  G     A+Y +LL      G     ++++ E++       +  D  TY+ + 
Sbjct: 343 VLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMR-----TAVPPDTATYNVLF 397

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +VF D  +++  +++  DML  GV P+ +T  +++ AC + GL   A  + E M + G  
Sbjct: 398 RVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMV 457

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           P +     L++A   A  ++ A+  F   T
Sbjct: 458 PTADAYTGLVEALGHAAMYEEAYVAFNMMT 487



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 66/340 (19%), Positives = 125/340 (36%), Gaps = 58/340 (17%)

Query: 99  VSEGNVSKFASMLSLEMVASG-----------IVKSIREGRIDCVVGVLKKLNELGVAPL 147
            S GN+S+ A + S EM A+G           +    R G     V VL+++   G AP 
Sbjct: 297 ASAGNLSRAAELFS-EMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPT 355

Query: 148 ELFDGSGFKLLKNECQRLLD-SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD 206
                + +++L       LD  G    F G+ ++  E R  V                PD
Sbjct: 356 ----AATYRVL-------LDLYGRQGRFDGVRQLFREMRTAVP---------------PD 389

Query: 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266
                         ++LF    R FG        +  +    K    P+M  C  ++  C
Sbjct: 390 TATY----------NVLF----RVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAAC 435

Query: 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADM 324
           G  G +  +R + E +  + +      +  L+    H   +      +  M ++G +  +
Sbjct: 436 GHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTL 495

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            +YN L  A    G   L QE       +     ++    ++  +++ +        A+K
Sbjct: 496 ETYNALAFAYARGG---LFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVK 552

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
              +M  +   P+  +   ++NA   AG+++++   FEE+
Sbjct: 553 AYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEEL 592


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/410 (21%), Positives = 159/410 (38%), Gaps = 80/410 (19%)

Query: 212 RYACIVPRADIL-FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           R   I PR  ++ F  F+  F KK+   + +   +       + N+Y    +I+      
Sbjct: 83  RMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLN 142

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
               S ++   +    +  +   FN+L+N   N   +K  +E++  M K G   ++ SY 
Sbjct: 143 HVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYT 202

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGV------------------------------ 358
            ++   C  GNT +A +++   K +E  G                               
Sbjct: 203 TVINGLCKTGNTSMAVDVF---KKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEM 259

Query: 359 ----LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
               +  +VFTY++IV  F +      A ++ ++M+   V PNT+T++ L++     G+V
Sbjct: 260 VERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMV 319

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF------------RSWTLS 462
            +A  +FE M + G EP+    N L+         + A ++F             S+ + 
Sbjct: 320 SEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNIL 379

Query: 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
                     D     ++ M HK                        +  P T TY+ LM
Sbjct: 380 INGYCKSRRMDEAKSLLAEMYHK------------------------ALNPDTVTYSTLM 415

Query: 523 KACCTDYYRVKALMN---EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +  C    R K  +N   EM + G  PN +++ IL+D     G+++ AL+
Sbjct: 416 QGLC-QLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALK 464



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM--K 274
           +P     + + V  F     L  A R +         PN      ++D  G+C + M  +
Sbjct: 264 IPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVD--GLCKEGMVSE 321

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL----EVYKNMQKLGVMADMASYNIL 330
           +R ++E +  + V  +I  +N+LM+   + L+  +    +V++ M + G      SYNIL
Sbjct: 322 ARLVFETMTEKGVEPDISTYNALMD--GYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNIL 379

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +   C +     A+ +  E+ H      L  D  TYST+++        + AL + ++M 
Sbjct: 380 INGYCKSRRMDEAKSLLAEMYH----KALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMC 435

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
           S G  PN +T+  L++     G +++A+ L + M +   EPN     IL++    A + +
Sbjct: 436 SYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLE 495

Query: 451 RAFRLF 456
            A  LF
Sbjct: 496 VAKELF 501



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 4/163 (2%)

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           K  L ++K M   G   ++ +Y ILL   C  G+   A ++   +K  E K  L+ ++  
Sbjct: 425 KEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMK--EKK--LEPNIVH 480

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+ +++    A   ++A ++   +   G  P+  T++ +I      GL ++A  LF +M 
Sbjct: 481 YTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKME 540

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468
             G  PNS   N+++Q  ++      A RL       +  V L
Sbjct: 541 DDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNL 583


>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 404

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 54/217 (24%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAG---VTPNTITWSSLINACANAGLVEQAM 418
           D +TY+ +V  +  AK ++ AL V   M  +      PNT+T ++LI+A    GL +QA+
Sbjct: 80  DQYTYTALVNAYGKAKMFEEALAVFSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAI 139

Query: 419 HLFEEM------LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            +F +M      L+ GCEPN    N+L+ A  +    D   ++ +               
Sbjct: 140 QVFFDMRDGTNGLEHGCEPNVITYNVLIDALCKEGLLDIGMKVLQYMR------------ 187

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YY 530
           DGNTD+                               S +P + TYN L+ AC     Y 
Sbjct: 188 DGNTDQ-------------------------------SVQPNSATYNTLINACGKGGLYE 216

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           + + L++ M   G+ P+HI++T LIDA G +G  E A
Sbjct: 217 KAEELVDLMVEHGVQPDHITYTALIDAYGKAGLWENA 253



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 141/337 (41%), Gaps = 33/337 (9%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLS---SPNMYICRTIIDVCGICGDYMKSRAIYE 280
           +   V  +GK +    AL  +   K+       PN   C  +ID     G Y ++  ++ 
Sbjct: 84  YTALVNAYGKAKMFEEALAVFSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFF 143

Query: 281 DLRSQNVTL------NIYVFNSLMNVNAHD--LKFTLEVYKNMQK----LGVMADMASYN 328
           D+R     L      N+  +N L++    +  L   ++V + M+       V  + A+YN
Sbjct: 144 DMRDGTNGLEHGCEPNVITYNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYN 203

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            L+ AC   G    A+E+   V  +   GV + D  TY+ ++  +  A  W+ A    + 
Sbjct: 204 TLINACGKGGLYEKAEEL---VDLMVEHGV-QPDHITYTALIDAYGKAGLWENAENTFKG 259

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M    V+ + + ++++I+A    GL ++A  +F+ M  +G  PN      L++A  +A  
Sbjct: 260 MKGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGL 319

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
            + +  +F         +     Y+GN    S++      +     N++  +      +R
Sbjct: 320 PEESRNVF--------NIMRESGYEGNVLIYSSL----IDAYGKAGNYLEAARMLDMMRR 367

Query: 509 FSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVG 543
              +P   TY+ ++ +CC    +   + L+  ++  G
Sbjct: 368 AGCQPNLITYSAILSSCCKSNCWVEAQVLLRRLQVFG 404



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 143/365 (39%), Gaps = 60/365 (16%)

Query: 230 EFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288
           E  ++ D    L  +  SKK     PN  +   +I   G  G    +  +++++  +   
Sbjct: 19  ELQRQHDWRCTLEVFSWSKKQSWYCPNSRLYTRLIGFLGREGRVHNATLLFQEMLLEKCQ 78

Query: 289 LNIYVFNSLMNVNAHDLKF--TLEVYKNMQK---LGVMADMASYNILLKACCLAGNTVLA 343
            + Y + +L+N       F   L V+ +M++        +  + N L+ A    G    A
Sbjct: 79  ADQYTYTALVNAYGKAKMFEEALAVFSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQA 138

Query: 344 QEIYGEVKHLEAKGV---LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTP 396
            +++ +++     G+    + +V TY+ ++          + +KV + M        V P
Sbjct: 139 IQVFFDMRD-GTNGLEHGCEPNVITYNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQP 197

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N+ T+++LINAC   GL E+A  L + M++ G +P+      L+ A  +A  ++ A   F
Sbjct: 198 NSATYNTLINACGKGGLYEKAEELVDLMVEHGVQPDHITYTALIDAYGKAGLWENAENTF 257

Query: 457 RSWTLSKTQV----------ALGED--YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
           +    +   V          A G +  Y    +    M+H                    
Sbjct: 258 KGMKGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMMQHS------------------- 298

Query: 505 FDKRFSFKPTTTTYNILMKACCTDYYRV------KALMNEMRTVGLSPNHISWTILIDAC 558
                  +P   TY  LM+A    Y +       + + N MR  G   N + ++ LIDA 
Sbjct: 299 -----GLRPNQVTYLSLMEA----YGKAGLPEESRNVFNIMRESGYEGNVLIYSSLIDAY 349

Query: 559 GGSGN 563
           G +GN
Sbjct: 350 GKAGN 354


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 100/209 (47%), Gaps = 6/209 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
           SP++     +I    I G    +  ++  +  +N+  ++Y FN L+N    D  +K    
Sbjct: 257 SPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKT 316

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+  M K G+  +  +YN L+   CL      A+ I+  +    A+G +  D+ +YS ++
Sbjct: 317 VFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTM----AQGGVNPDIQSYSIMI 372

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F   K +  A+ + ++M    + P+ +T+SSLI+  + +G +  A+ L ++M   G  
Sbjct: 373 NGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVP 432

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSW 459
           PN    N +L A  +  Q D+A  L   +
Sbjct: 433 PNICTYNSILDALCKTHQVDKAIALLTKF 461



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 116/261 (44%), Gaps = 18/261 (6%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            +++  M   G+  D+ +Y+ L+   C+ G    A +++ ++  LE    +K DV+T++ 
Sbjct: 245 FDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMI-LEN---IKPDVYTFNI 300

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +V  F      +    V + M+  G+ PN +T++SL++       V +A  +F  M Q G
Sbjct: 301 LVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG 360

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
             P+ Q  +I++    +  +FD A  LF+     K  +     Y    D +S        
Sbjct: 361 VNPDIQSYSIMINGFCKIKKFDEAMNLFKEMH-RKNIIPDVVTYSSLIDGLSK-----SG 414

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSP 546
            I+     V   H    D+     P   TYN ++ A C  +   +  AL+ + +  G  P
Sbjct: 415 RISYALQLVDQMH----DR--GVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQP 468

Query: 547 NHISWTILIDACGGSGNVEGA 567
           +  +++ILI     SG +E A
Sbjct: 469 DISTYSILIKGLCQSGKLEDA 489



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 128/275 (46%), Gaps = 23/275 (8%)

Query: 188 VKELDEEFRIVQLCVNK---PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244
           VK ++E F +    V+K   PDV   + Y+ ++    IL        GK +D   A+  +
Sbjct: 238 VKLVNEAFDLFSEMVSKGISPDV---VTYSALISGFCIL--------GKLKD---AIDLF 283

Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--A 302
           +        P++Y    +++     G   + + +++ +  Q +  N   +NSLM+     
Sbjct: 284 NKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLV 343

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
            ++     ++  M + GV  D+ SY+I++   C       A  ++   K +  K ++  D
Sbjct: 344 KEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLF---KEMHRKNIIP-D 399

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V TYS+++   + +     AL++ + M   GV PN  T++S+++A      V++A+ L  
Sbjct: 400 VVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLT 459

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           +    G +P+    +IL++   ++ + + A ++F 
Sbjct: 460 KFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFE 494



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 118/289 (40%), Gaps = 29/289 (10%)

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           M+ R I  +L + N+ +N +    L       + F   V+  + K+G + D  ++  L K
Sbjct: 111 MEFRGIKPNLVNCNILINCFCQLGL-------IPFAFSVFAKILKMGYVPDTITFTTLSK 163

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             CL G    A   + +V  L        D  +Y T++         + AL + + +   
Sbjct: 164 GLCLKGQIQQAFLFHDKVVALG----FHFDQISYGTLIHGLCKVGETRAALDLLQRVDGN 219

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            V PN + ++++I++     LV +A  LF EM+  G  P+    + L+       +   A
Sbjct: 220 LVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDA 279

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFS 510
             LF    L   +    + Y  N   + N   KD +              + FD   +  
Sbjct: 280 IDLFNKMILENIK---PDVYTFNI--LVNAFCKDGKM---------KEGKTVFDMMMKQG 325

Query: 511 FKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
            KP   TYN LM   C   +  + K++ N M   G++P+  S++I+I+ 
Sbjct: 326 IKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMING 374



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 89/182 (48%), Gaps = 6/182 (3%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++++  +N+  ++  ++SL++    +  + + L++   M   GV  ++ +YN +L A C
Sbjct: 387 LFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALC 446

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
               T    +    +   + KG  + D+ TYS ++K    +   + A KV ED+L  G  
Sbjct: 447 ---KTHQVDKAIALLTKFKDKG-FQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYN 502

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            +   ++ +I      GL  +A+ L  +M   GC P+++   I++ +  +  + D A +L
Sbjct: 503 LDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKL 562

Query: 456 FR 457
            R
Sbjct: 563 LR 564


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 133/303 (43%), Gaps = 33/303 (10%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E +R      +++    L+N    A       +VYK M ++GV+ ++  +N+L+ ACC
Sbjct: 174 VFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACC 233

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +G+   A+++  E   +E++ +   D+FTY+T++ ++        AL +++ M   GV+
Sbjct: 234 KSGDVEKAEQLLNE---MESRFIFP-DLFTYNTLISLYCKKGMHYEALGIQDRMERGGVS 289

Query: 396 PNTITWSSLINA-CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           P+ +T++SLI   C     +E+A+ L E M   G  P     N +L+   E  +   A R
Sbjct: 290 PDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANR 349

Query: 455 LFRSWTLSKTQV------ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
           L    +  K +        L   Y    D  S M+ K K                     
Sbjct: 350 LLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKML------------------E 391

Query: 509 FSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
              KP   T+  L+   C   +    K  + EM   G SP++ +++ L+D+     N E 
Sbjct: 392 AGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEA 451

Query: 567 ALQ 569
            ++
Sbjct: 452 VIR 454



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 8/220 (3%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           +VP   I F   +    K  D+  A +  +  +     P+++   T+I +    G + ++
Sbjct: 218 VVPNIHI-FNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEA 276

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMN---VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
             I + +    V+ +I  +NSL+       +DL+  L + + M+  G+   + +YN +L+
Sbjct: 277 LGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILR 336

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G    A  +  E+   + +     D  T +T++  +        A+KVK+ ML A
Sbjct: 337 KLCEEGKIKDANRLLNEMSERKVEP----DNVTCNTLINAYCKIGDMGSAMKVKKKMLEA 392

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           G+ P+  T+ +LI+       V+ A     EML AG  P+
Sbjct: 393 GLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPS 432



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 50/208 (24%)

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           S +V  +A+++  Q A++V E M   G  P+    + L+N+ A A L      ++++M++
Sbjct: 156 SWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVR 215

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G  PN    N+L+ AC ++   ++A +L                               
Sbjct: 216 VGVVPNIHIFNVLIHACCKSGDVEKAEQLL------------------------------ 245

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGL 544
                           +  + RF F P   TYN L+   C    +Y    + + M   G+
Sbjct: 246 ----------------NEMESRFIF-PDLFTYNTLISLYCKKGMHYEALGIQDRMERGGV 288

Query: 545 SPNHISWTILIDA-CGGSGNVEGALQCR 571
           SP+ +++  LI   C    ++E AL+ R
Sbjct: 289 SPDIVTYNSLIYGFCREVNDLEEALRLR 316



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 99/241 (41%), Gaps = 24/241 (9%)

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            N+ + Q+     +H+   G  K  +   + ++   A A+   M  KV + M+  GV PN
Sbjct: 163 ANSRMTQDAIQVFEHMRVHG-FKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPN 221

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAF--- 453
              ++ LI+AC  +G VE+A  L  EM      P+    N L+   C +   ++      
Sbjct: 222 IHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQD 281

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK-QSITNTPNFVPNSHYSSFDKRFSFK 512
           R+ R   +S   V       G    ++++E   + + +                      
Sbjct: 282 RMERG-GVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVE---------------GLH 325

Query: 513 PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           P   TYN +++  C +     A  L+NEM    + P++++   LI+A    G++  A++ 
Sbjct: 326 PGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKV 385

Query: 571 R 571
           +
Sbjct: 386 K 386


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 154/359 (42%), Gaps = 44/359 (12%)

Query: 245 DASKKHLSS----PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300
           DA+++ + S    P+ Y    +I V    G    + ++ +D+  +    N+  +  L+  
Sbjct: 128 DAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEA 187

Query: 301 NAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358
              +  F   + V   M+  G   ++ +YN+++   C  G    A+E+   +  L + G 
Sbjct: 188 MCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREL---LNRLPSYG- 243

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
            + D  +Y+T++K    +K W    ++  +M+     PN +T+  LI      G+VE+A+
Sbjct: 244 FQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAI 303

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALG- 469
            + E+M + GC  N+  CNI++ +  +  + D AF+L            T+S T V  G 
Sbjct: 304 QVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGL 363

Query: 470 ---EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS-------------FDKRFSFKP 513
              E +D   + ++ M   +       PN V  + +                 ++ S   
Sbjct: 364 CRAERWDDAKELLNEMVRNN-----CPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHG 418

Query: 514 TT---TTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            T    TYN L+   C   + + + +   R++   PN I++T L+     +  ++GA +
Sbjct: 419 CTVGVVTYNALVNGFCVQGH-IDSALELFRSMPCKPNTITYTTLLTGLCNAERLDGAAE 476



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 129/306 (42%), Gaps = 43/306 (14%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++ ++  +N   N   F+ L+        ++  ++V + M + G   +    NI++ + C
Sbjct: 270 LFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSIC 329

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G      + +  +  + + G    D  +Y+T++K    A+ W  A ++  +M+     
Sbjct: 330 KQGRV---DDAFKLLNDMGSYGC-NPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCP 385

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFR 454
           PN +T+++ I      GL+EQA+ L E+M + GC       N L+   CV+    D A  
Sbjct: 386 PNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQG-HIDSALE 444

Query: 455 LFRSW-----TLSKTQVALG----EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
           LFRS      T++ T +  G    E  DG  + ++ M   D                   
Sbjct: 445 LFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGD------------------- 485

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGN 563
                  P   T+N+L+   C   +  +A  L+ +M   G +PN I++  L+D      +
Sbjct: 486 -----CPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCS 540

Query: 564 VEGALQ 569
            E AL+
Sbjct: 541 SEDALE 546



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 146/356 (41%), Gaps = 52/356 (14%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           REGR+D    +L +L   G  P  +   S   LLK  C         E+F    E++E+ 
Sbjct: 225 REGRVDDARELLNRLPSYGFQPDTV---SYTTLLKGLCASKRWDDVEELFA---EMMEKN 278

Query: 185 RLPVKELDEEFRIVQLCVNKPDVNLAIRYAC---IVPRA--------------DILFCNF 227
            +P               N+   ++ IR+ C   +V RA              +   CN 
Sbjct: 279 CMP---------------NEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNI 323

Query: 228 V-REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRS 284
           V     K+  +  A +  +    +  +P+     T++   G+C    +  ++ +  ++  
Sbjct: 324 VINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLK--GLCRAERWDDAKELLNEMVR 381

Query: 285 QNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
            N   N   FN+ + +      ++  + + + M + G    + +YN L+   C+ G+   
Sbjct: 382 NNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDS 441

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A E++  +         K +  TY+T++    +A+    A ++  +ML     PN +T++
Sbjct: 442 ALELFRSMP-------CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFN 494

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            L++     G +E+A+ L E+M++ GC PN    N LL    + C  + A  L   
Sbjct: 495 VLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHG 550



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 6/179 (3%)

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E  RS     N   + +L+    NA  L    E+   M +     ++ ++N+L+   C  
Sbjct: 444 ELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQK 503

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G     +E    V+ +   G    ++ TY+T++         + AL++   ++S GV+P+
Sbjct: 504 G---FLEEAIELVEQMMEHGCTP-NLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPD 559

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            IT+SS+I   +    +E+A+ LF  +   G  P +   N +L    + C+ D A   F
Sbjct: 560 VITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFF 618



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 290 NIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  FN L++       L+  +E+ + M + G   ++ +YN LL       ++  A E+ 
Sbjct: 489 NVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALEL- 547

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             +  L +KGV   DV T+S+I+ + +     + A+++   +   G+ P  + ++ ++  
Sbjct: 548 --LHGLVSKGV-SPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLG 604

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
                 ++ A+  F  M+  GC PN     IL++ 
Sbjct: 605 LCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEG 639


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 113/268 (42%), Gaps = 42/268 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I++ N VR + +  ++  A R +   K     PN+Y    +ID    CG   ++  I+ +
Sbjct: 199 IVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAE 258

Query: 282 LRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILL-------- 331
           +       N   +NSLM  +V A   +  L+VY  M++LG   D  +YN L+        
Sbjct: 259 MLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDEN 318

Query: 332 -------------KAC------------CLA--GNTVLAQEIYGEVKHLEAKGVLKLDVF 364
                        K C            C+A  G+   A  +Y ++K L  +     +  
Sbjct: 319 LEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEA----NTV 374

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY+T++K+F  +K   M LK+K +M    + PN  T+  LI      G    A   F EM
Sbjct: 375 TYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMGHWNNAYKFFREM 434

Query: 425 LQAGC-EPNSQCCNILLQACVEACQFDR 451
           +   C  P+    +++LQ   +A Q  +
Sbjct: 435 IDEKCLRPSLPVYDMVLQQLRKAGQLKK 462



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 64/294 (21%)

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++++NV + +  F  LM   V A      +  +  M+      D  +++IL+   C    
Sbjct: 120 MKARNVDVTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERR 179

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              AQE +  +K        + DV  Y+ +V+ +  A     A +V  +M  AG+ PN  
Sbjct: 180 ASQAQEFFDSLK-----DKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVY 234

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+S +I++    G + +A  +F EML AGC+PNS   N L++  V+A + ++  +++   
Sbjct: 235 TYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQM 294

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                                          KR   +P T TYN
Sbjct: 295 -----------------------------------------------KRLGCEPDTVTYN 307

Query: 520 ILMKACCTDYYRVKALMNEMRTVGL------SPNHISWTILIDACGGSGNVEGA 567
            L++  C D    + L + ++ +GL      +PN  ++  L       G+V  A
Sbjct: 308 FLIETHCKD----ENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAA 357



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 73/147 (49%), Gaps = 4/147 (2%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+  M+  G+  ++ +Y+I++ + C  G    A +I+ E+  L+A    + +  TY++++
Sbjct: 220 VFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEM--LDAG--CQPNSITYNSLM 275

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           ++   A   +  L+V   M   G  P+T+T++ LI        +E A+ +   M + GC 
Sbjct: 276 RIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCA 335

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFR 457
           PN+   N L     +    + A R+++
Sbjct: 336 PNASTFNTLFGCIAKLGDVNAAHRMYK 362


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 146/356 (41%), Gaps = 25/356 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I +C  V   GK R   S +       K   +  M   +  I      G+   +  ++E 
Sbjct: 222 ITYCKMVHILGKARQFQSMVALIQEMGKE-GALCMDAFKIAIKSFAAAGEIKNAVGVFEM 280

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDL--KFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R+      +  FN L+   A +   +   +V+  M+      D+ SY  L+ A C A N
Sbjct: 281 MRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDR-YAPDLRSYTALMLAWCNARN 339

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            V A  ++ E+     +  LK DV  ++T+++     +    A+K+ E M + G  PN  
Sbjct: 340 LVEAGRVWNEM----LENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVW 395

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++ LI      G ++ AM  FEEM   GC+P+      LL     A + DR   L    
Sbjct: 396 TYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEM 455

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
           T  K     G  Y+     ++N          N P+     +     K    +PT  TYN
Sbjct: 456 T-QKGCPPDGRTYNALIKLLTN---------RNMPDDAARIYKKMIKK--GLEPTIHTYN 503

Query: 520 ILMKA---CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
           ++MK+      +Y    A+  EM   G+ P+  S+T+ I+     G  E A  C++
Sbjct: 504 MMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEA--CKY 557



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 98/234 (41%), Gaps = 46/234 (19%)

Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIY 292
           R+LV A R ++   ++   P++ +  T+I+  G+     +  A+  +E ++++    N++
Sbjct: 338 RNLVEAGRVWNEMLENGLKPDVVVHNTMIE--GLLRGQRRPEAVKMFELMKAKGPAPNVW 395

Query: 293 VFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILL------------------- 331
            +  L+  +     +   +  ++ MQ +G   D+A+Y  LL                   
Sbjct: 396 TYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEM 455

Query: 332 --KACCLAGNTV--------------LAQEIYGEVKHLEAKGVLKLDVFTYSTIVK-VFA 374
             K C   G T                A  IY   K +  KG L+  + TY+ ++K  F 
Sbjct: 456 TQKGCPPDGRTYNALIKLLTNRNMPDDAARIY---KKMIKKG-LEPTIHTYNMMMKSYFL 511

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
             + + M   V E+M   G+ P+  +++  IN     G  E+A    EEM+Q G
Sbjct: 512 GGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKG 565


>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 156/363 (42%), Gaps = 40/363 (11%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +RY      +++ F   +  +GK  +   A R      K  SSPN+     +++  G  G
Sbjct: 129 LRYQNWWNFSEMDFLMLITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGG 188

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNM---QKLGVMADMA 325
               + AI+  ++S     +   +  ++   V     K   EV++ +   +K  +  D  
Sbjct: 189 KCNNAEAIFRRMQSSGPEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQK 248

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
            Y++++     AGN   A++++     +  KGV +  V TY++++    +   ++   K+
Sbjct: 249 MYHMMIYMYKKAGNYDKARKVFS---SMVGKGVPQSTV-TYNSLMSFETN---YKEVSKI 301

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + M  +G+ P+ ++++ LI A   A   E+A+ +FEEML AG  P  +  NILL A   
Sbjct: 302 YDQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAI 361

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT-PNFVPNSHYSS 504
           +   ++A  +F+S                  DRI      D  S T     +V  S    
Sbjct: 362 SGMVEQAKTVFKSM---------------RRDRI----FPDLWSYTTMLSAYVNASDMEG 402

Query: 505 FDKRF------SFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556
            +K F       F+P   TY  ++K  A   D  ++  +  +MR  G+  N    T ++D
Sbjct: 403 AEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 462

Query: 557 ACG 559
           A G
Sbjct: 463 ASG 465



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 104/241 (43%), Gaps = 32/241 (13%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307
           KK    P+  +   +I +    G+Y K+R ++  +  + V  +   +NSLM+    + K 
Sbjct: 239 KKSPLKPDQKMYHMMIYMYKKAGNYDKARKVFSSMVGKGVPQSTVTYNSLMSFET-NYKE 297

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL-------------- 353
             ++Y  MQ+ G+  D+ SY +L+KA   A     A  ++ E+                 
Sbjct: 298 VSKIYDQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLD 357

Query: 354 ---------EAKGVLK--------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
                    +AK V K         D+++Y+T++  + +A   + A K  + +   G  P
Sbjct: 358 AFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEP 417

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N +T+ ++I   A A  VE+ M ++E+M  +G + N      ++ A      F  A   +
Sbjct: 418 NIVTYGTMIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKDFGSALGWY 477

Query: 457 R 457
           +
Sbjct: 478 K 478



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 99/216 (45%), Gaps = 6/216 (2%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301
           + YD  ++    P++     +I   G      ++ +++E++    V      +N L++  
Sbjct: 300 KIYDQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAF 359

Query: 302 AHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           A    ++    V+K+M++  +  D+ SY  +L A   A +   A++ +   K ++  G  
Sbjct: 360 AISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFF---KRIKVDG-F 415

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           + ++ TY T++K +A A   +  ++V E M  +G+  N    +++++A         A+ 
Sbjct: 416 EPNIVTYGTMIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKDFGSALG 475

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            ++EM   G  P+ +  N+LL       + D A  L
Sbjct: 476 WYKEMESCGVPPDQKAKNVLLSLYSTQDELDEAKEL 511


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 6/238 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I++ N VR + +  ++  A + +   K     PN+Y    +ID    CG   ++  ++ D
Sbjct: 256 IVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFAD 315

Query: 282 LRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +       N   FN+LM  +V A   +  L+VY  M+KLG   D  +YN L++A C   N
Sbjct: 316 MLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDEN 375

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++   +     K   +++  T++TI +     +    A ++   M+ A   PNT+
Sbjct: 376 LENAVKVLNTM----IKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTV 431

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           T++ L+     +   +  + + +EM     EPN     +L+        ++ A++LF+
Sbjct: 432 TYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFK 489



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 26/253 (10%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+  Y  L++  C AG    A++++ E+K       ++ +V+TYS ++           A
Sbjct: 254 DVIVYTNLVRGWCRAGEISEAEKVFKEMK----LAGIEPNVYTYSIVIDALCRCGQISRA 309

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
             V  DML +G  PN IT+++L+     AG  E+ + ++ +M + GCEP++   N L++A
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEA 369

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
                  + A ++  +    K +V      + +T        + K+ +        N  +
Sbjct: 370 HCRDENLENAVKVLNTMIKKKCEV------NASTFNTIFRYIEKKRDV--------NGAH 415

Query: 503 SSFDKRFSFK--PTTTTYNILMK----ACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556
             + K    K  P T TYNILM+    +  TD   V  +  EM    + PN  ++ +L+ 
Sbjct: 416 RMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDM--VLKMKKEMDDKEVEPNVNTYRLLVT 473

Query: 557 ACGGSGNVEGALQ 569
              G G+   A +
Sbjct: 474 MFCGMGHWNNAYK 486


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 154/347 (44%), Gaps = 37/347 (10%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312
           SPN+Y    +I      G+       + ++       N+  +N++++     L+   E +
Sbjct: 200 SPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYC-KLRKIGEAF 258

Query: 313 KNMQKL---GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           K ++ +   G+  ++ SYN+++   C  G      EI  E+    +K     D  T++T+
Sbjct: 259 KLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM----SKRRYVPDRVTFNTL 314

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  + +   +  AL +  +M+  G++PN +T+++LIN+   AG + +AM   ++M   G 
Sbjct: 315 INGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGL 374

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGN--TDRISNMEH 484
            PN +    L+    +     +A+++ +       + T +      +G+    R+ +   
Sbjct: 375 HPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASG 434

Query: 485 KDKQSITNTPNFVPN-SHYSS----------FDKRFSFK---------PTTTTYNILMKA 524
             ++ I     F+P+   YS+           +K F  K         P   TY+ L++ 
Sbjct: 435 LLQEMIER--GFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQG 492

Query: 525 CCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            C       V  L  EM ++GL P+ +++T LI+A    G+++ AL+
Sbjct: 493 LCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALR 539



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 141/342 (41%), Gaps = 51/342 (14%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
           SPN+    T+I+     G+  ++    + +R + +  N   + +L++  +    LK   +
Sbjct: 340 SPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQ 399

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + K M + G    + +YN L+   C+ G     ++  G ++ +  +G +  DV +YSTI+
Sbjct: 400 IMKEMVENGFTPTIITYNALINGHCILGRM---EDASGLLQEMIERGFIP-DVVSYSTII 455

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F   +  + A ++K +M++ G++P+  T+SSLI        + +   LF+EML  G  
Sbjct: 456 SGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLP 515

Query: 431 PNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           P+      L+ A C+E    D+A RL         Q     D       I+     +KQS
Sbjct: 516 PDEVTYTSLINAYCIEG-DLDKALRLHDEM----IQKGFSPDIVTYNVLINGF---NKQS 567

Query: 490 ITNTPNFVPNSHYSSFDKRFSFK-------PTTTTYNILMKACCTDYYR----------V 532
            T               KR   K       P   TYN L+  C    ++          +
Sbjct: 568 RTKEA------------KRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCM 615

Query: 533 KALMNE-------MRTVGLSPNHISWTILIDACGGSGNVEGA 567
           K LMNE       M   G   N   + ++I      GN+E A
Sbjct: 616 KGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKA 657



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 106/269 (39%), Gaps = 53/269 (19%)

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
             +K    ++K M + GV  ++ +YNIL++  C AGN  +    +GE   +E  G L  +
Sbjct: 182 QSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGE---MERNGCLP-N 237

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V TY+TI+  +   +    A K+   M   G+ PN I+++ +IN     G +++   + E
Sbjct: 238 VVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILE 297

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
           EM +    P+    N L+        F +A  L                   + + + N 
Sbjct: 298 EMSKRRYVPDRVTFNTLINGYCNVGNFHQALVL-------------------HAEMVKN- 337

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMR 540
                                         P   TY  L+ + C   +  R    +++MR
Sbjct: 338 ---------------------------GLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMR 370

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQ 569
             GL PN  ++T LID     G ++ A Q
Sbjct: 371 DRGLHPNGRTYTTLIDGFSQQGFLKQAYQ 399



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 126/301 (41%), Gaps = 20/301 (6%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +  I++++    V+ N+Y +N L+     A +L+  L  +  M++ G + ++ +YN ++ 
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIID 246

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           A C         E +  ++ +  KG L  ++ +Y+ ++         +   ++ E+M   
Sbjct: 247 AYCKLRKI---GEAFKLLRLMALKG-LNPNLISYNVVINGLCREGQMKETSEILEEMSKR 302

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
              P+ +T+++LIN   N G   QA+ L  EM++ G  PN      L+ +  +A   +RA
Sbjct: 303 RYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRA 362

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
              F      +     G  Y    D  S      KQ+       V N           F 
Sbjct: 363 ME-FLDQMRDRGLHPNGRTYTTLIDGFSQQGFL-KQAYQIMKEMVENG----------FT 410

Query: 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           PT  TYN L+   C          L+ EM   G  P+ +S++ +I     +  +E A Q 
Sbjct: 411 PTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQL 470

Query: 571 R 571
           +
Sbjct: 471 K 471



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 15/210 (7%)

Query: 363 VFTYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           V +Y+ I+  V    +  ++A  + ++M+ +GV+PN  T++ LI     AG +E  +  F
Sbjct: 167 VLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFF 226

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM + GC PN    N ++ A  +  +   AF+L R   L      L  +       I+ 
Sbjct: 227 GEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALK----GLNPNLISYNVVING 282

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEM 539
           +  + +   T+              KR  + P   T+N L+   C   ++++   L  EM
Sbjct: 283 LCREGQMKETSEI-------LEEMSKR-RYVPDRVTFNTLINGYCNVGNFHQALVLHAEM 334

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              GLSPN +++T LI++   +GN+  A++
Sbjct: 335 VKNGLSPNVVTYTTLINSMCKAGNLNRAME 364



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 27/176 (15%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++++ S  +  +   + SL+N      DL   L ++  M + G   D+ +YN+L+    
Sbjct: 505 LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLI---- 560

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDV---FTYSTIV---------------KVFADAK 377
              N    Q    E K L  K + +  V    TY+T++               K F    
Sbjct: 561 ---NGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKG 617

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
               A +V E ML  G   N   ++ +I+  +  G +E+A +L++EML +G  P+S
Sbjct: 618 LMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHS 673


>gi|307110849|gb|EFN59084.1| hypothetical protein CHLNCDRAFT_137845 [Chlorella variabilis]
          Length = 576

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 137/350 (39%), Gaps = 38/350 (10%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLR-SQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           + + C  ++  C  CG + ++   +   R +  + LN+  + +LM+    A   + +++V
Sbjct: 165 DAFTCSALLSACQACGQWEQALEWFGQARATPGLQLNVVHYTTLMSCLQKAGQWERSMDV 224

Query: 312 YKNMQKLGVMADMA----------------------SYNILLKACCLAGNTVLAQEIYGE 349
           ++ M+  G++ D                        SYN L+ AC   G    A E++  
Sbjct: 225 FRQMEAAGIVPDGGDWEAGWAVFLAMRQAGLTPSTISYNALISACERCGQPDRALEVFAS 284

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           ++    +G    +  T++T++   A A  +  A ++   M +AG+  +  T S+LI AC 
Sbjct: 285 MQR---RGQAPPNAVTFNTLISACAKAGRYAKARELHAAMAAAGIPEDVFTLSALITACE 341

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
             G  + A   F E    G  PN+   N L+ A   + ++ RA   FR+        A  
Sbjct: 342 RIGHWQGAEDHFVEFQARGVAPNTVAYNRLISALGRSGEWQRAVAAFRAMQPGAAGGAAS 401

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CT 527
                      +   K   S            Y ++      +P   TY  L+ A     
Sbjct: 402 ASTSSRGSTSGSGSSKVPASGGGGGGGGDEFVYPAYVGAVPARPDRITYGSLIAALERGG 461

Query: 528 DYYRVKALMNEMRTVGLS--------PNHISWTILIDACGGSGNVEGALQ 569
            + R  A+  EM+  G+         PN   +T LI+AC   G  E A++
Sbjct: 462 QWQRALAVFEEMQAAGMQVEENAAAVPNGYIFTSLINACEKGGQWETAVR 511



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 104/304 (34%), Gaps = 99/304 (32%)

Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNI------------------------------- 329
            A D    L +Y  M++ GV+ D+ +YNI                               
Sbjct: 108 RAKDTGAALALYDEMRRDGVLPDVVAYNICLTAAGLGHHWGRVLSLLGDMEAAGVGWDAF 167

Query: 330 ----LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
               LL AC   G    A E +G+ +   A   L+L+V  Y+T++     A  W+ ++ V
Sbjct: 168 TCSALLSACQACGQWEQALEWFGQAR---ATPGLQLNVVHYTTLMSCLQKAGQWERSMDV 224

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
              M +AG+ P+   W             E    +F  M QAG  P++   N L+ AC  
Sbjct: 225 FRQMEAAGIVPDGGDW-------------EAGWAVFLAMRQAGLTPSTISYNALISACER 271

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
             Q DRA  +F S                                               
Sbjct: 272 CGQPDRALEVFAS----------------------------------------------M 285

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
            +R    P   T+N L+ AC     Y + + L   M   G+  +  + + LI AC   G+
Sbjct: 286 QRRGQAPPNAVTFNTLISACAKAGRYAKARELHAAMAAAGIPEDVFTLSALITACERIGH 345

Query: 564 VEGA 567
            +GA
Sbjct: 346 WQGA 349



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 92/230 (40%), Gaps = 22/230 (9%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDL 305
           ++  + PN     T+I  C   G Y K+R ++  + +  +  +++  ++L+         
Sbjct: 287 RRGQAPPNAVTFNTLISACAKAGRYAKARELHAAMAAAGIPEDVFTLSALITACERIGHW 346

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK-----HLEAKGVLK 360
           +   + +   Q  GV  +  +YN L+ A   +G    A   +  ++        +     
Sbjct: 347 QGAEDHFVEFQARGVAPNTVAYNRLISALGRSGEWQRAVAAFRAMQPGAAGGAASASTSS 406

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-----PNTITWSSLINACANAGLVE 415
               + S   KV A            E +  A V      P+ IT+ SLI A    G  +
Sbjct: 407 RGSTSGSGSSKVPASGG--GGGGGGDEFVYPAYVGAVPARPDRITYGSLIAALERGGQWQ 464

Query: 416 QAMHLFEEMLQAGCE--------PNSQCCNILLQACVEACQFDRAFRLFR 457
           +A+ +FEEM  AG +        PN      L+ AC +  Q++ A RLF+
Sbjct: 465 RALAVFEEMQAAGMQVEENAAAVPNGYIFTSLINACEKGGQWETAVRLFK 514



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV--------TPNTITWSSLINACANA 411
           + D  TY +++        WQ AL V E+M +AG+         PN   ++SLINAC   
Sbjct: 444 RPDRITYGSLIAALERGGQWQRALAVFEEMQAAGMQVEENAAAVPNGYIFTSLINACEKG 503

Query: 412 GLVEQAMHLFEEM 424
           G  E A+ LF+ M
Sbjct: 504 GQWETAVRLFKLM 516


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 116/276 (42%), Gaps = 42/276 (15%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V   M++ G   +  +YN+L+   C +G     +E +G  K +E  G++  D FTY  +
Sbjct: 243 KVLVEMRERGCGLNTVTYNVLIAGLCRSGAV---EEAFGFKKDMEDYGLVP-DGFTYGAL 298

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +     ++    A  + ++M  A + PN + +++LI+     G  ++A  + +EM+ AG 
Sbjct: 299 INGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGV 358

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +PN    + L++   +  Q DRA  L +                        M     + 
Sbjct: 359 QPNKITYDNLVRGLCKMGQMDRASLLLK-----------------------QMVRDSHRP 395

Query: 490 ITNTPNFVPNSHYSSFDKRFSFK-----------PTTTTYNILMKACCTDYYRVKA--LM 536
            T T N +   H+    K+ +F+           P   TY+I++   C      KA  L+
Sbjct: 396 DTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLL 455

Query: 537 NEMRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
            EM T GL PN   +  LI      GNV  +L C  
Sbjct: 456 EEMTTKGLKPNAFVYAPLISGYCREGNV--SLACEI 489



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 113/512 (22%), Positives = 193/512 (37%), Gaps = 116/512 (22%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL---------KNECQRLLDS---GEVE 172
           R G ++   G  K + + G+ P    DG  +  L          NE + LLD     E++
Sbjct: 269 RSGAVEEAFGFKKDMEDYGLVP----DGFTYGALINGLCKSRRSNEAKALLDEMSCAELK 324

Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCV------NKPDVNLAIRYACIV---PRADIL 223
             V +   L +  +     DE F++++  V      NK   +  +R  C +    RA +L
Sbjct: 325 PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLL 384

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLS----------------SPNMYICRTIIDVCG 267
               VR+   + D ++     +   +H S                SPN+Y    +I   G
Sbjct: 385 LKQMVRD-SHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIH--G 441

Query: 268 IC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMAD 323
           +C  G+  K+  + E++ ++ +  N +V+  L++    +   +L  E++  M K+ V+ D
Sbjct: 442 LCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPD 501

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           +  YN L                                +F  S + +V    K++    
Sbjct: 502 LYCYNSL--------------------------------IFGLSKVGRVEESTKYFA--- 526

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
                M   G+ PN  T+S LI+     G +E A  L + ML  G +PN      LL++ 
Sbjct: 527 ----QMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESY 582

Query: 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDG----NTDRISNMEHKDK-QSITNTPNFVP 498
            ++   ++    F+S  +    V L     G    N     NME   +  S       VP
Sbjct: 583 FKSDDIEKVSSTFKS--MLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVP 640

Query: 499 NSH-YSSF--------DKRFSF-----------KPTTTTYNILMKACCT--DYYRVKALM 536
           + H YSS         D+  +F            P    YN L+   C   D    + + 
Sbjct: 641 DVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVF 700

Query: 537 NEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           N +   GL PN +++T LID     G++  A 
Sbjct: 701 NSILAKGLVPNCVTYTSLIDGSCKVGDISNAF 732



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 14/247 (5%)

Query: 221 DILFCNFVREFGKKRDLVSA----LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           +  +   +  + K  DL SA     R  D   K    PN  I   +++      D  K  
Sbjct: 537 EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLK----PNDVIYIDLLESYFKSDDIEKVS 592

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           + ++ +  Q V L+  ++  L++   ++ +++    V   ++K G + D+  Y+ L+   
Sbjct: 593 STFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGL 652

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C    T   ++ +G +  +  KGV   ++  Y+ ++     +     A  V   +L+ G+
Sbjct: 653 C---KTADREKAFGILDEMSKKGV-DPNIVCYNALIDGLCKSGDISYARNVFNSILAKGL 708

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PN +T++SLI+     G +  A +L+ EML  G  P++   ++L   C  A   ++A  
Sbjct: 709 VPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMF 768

Query: 455 LFRSWTL 461
           L     L
Sbjct: 769 LIEEMFL 775



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +++V++SL++      D +    +   M K GV  ++  YN L+   C +G+   A+ ++
Sbjct: 641 DVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVF 700

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             +    AKG++  +  TY++++           A  +  +ML+ G+TP+   +S L   
Sbjct: 701 NSIL---AKGLVP-NCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTG 756

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           C++AG +EQAM L EEM   G    S   N++   C
Sbjct: 757 CSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFC 792


>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic [Vitis vinifera]
          Length = 929

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 6/238 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +L+ N +R F    ++  A+R     +K    P       II      GD  ++  I++ 
Sbjct: 535 VLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDM 594

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R       ++ FN+L+   V    ++  +E+   M   G+  +  +Y  ++      G+
Sbjct: 595 MRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGD 654

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A E + ++K    +G L+LDV+TY  ++K    +   Q AL V  +M S  +  NT 
Sbjct: 655 TGKAFEYFTKLK---TEG-LELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTF 710

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            ++ LI+  A  G V +A  L ++M Q G +P+       + AC +A    RA +  +
Sbjct: 711 VYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQ 768



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 133/311 (42%), Gaps = 20/311 (6%)

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNM 315
           I  T++D   I G+  K   +++ L+    T ++  +  L+N  +    +   LEV K M
Sbjct: 431 IYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMM 490

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           +  G+  +M +Y++L+       +   A  ++ +V     K  LK DV  Y+ I++ F  
Sbjct: 491 EVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDV----VKDGLKPDVVLYNNIIRAFCG 546

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
                 A++  ++M      P T T+  +I+  A +G + +A+ +F+ M  +GC P    
Sbjct: 547 MGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHT 606

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
            N L+   VE CQ ++A  +    +L+            N    + + H    S+ +T  
Sbjct: 607 FNALILGLVEKCQMEKAVEILDEMSLAGISP--------NEHTYTTIMH-GYASLGDTGK 657

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTI 553
                 Y +  K    +    TY  L+KACC       AL    EM +  +  N   + I
Sbjct: 658 AF---EYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNI 714

Query: 554 LIDACGGSGNV 564
           LID     G+V
Sbjct: 715 LIDGWARRGDV 725



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 6/192 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           SPN +   TI+      GD  K+   +  L+++ + L++Y + +L+     +  ++  L 
Sbjct: 636 SPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALA 695

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M    +  +   YNIL+      G+   A E+   ++ ++ +GV + D+ TY++ +
Sbjct: 696 VTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAEL---MQQMKQEGV-QPDIHTYTSFI 751

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A   Q A K  ++M   GV PN  T+++LI+  A A L E+A+  F+EM  AG +
Sbjct: 752 NACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLK 811

Query: 431 PNSQCCNILLQA 442
           P+    + L+ +
Sbjct: 812 PDKAVYHCLMTS 823



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 127/307 (41%), Gaps = 26/307 (8%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN 328
           D+  + A++ED+    +  ++ ++N+++       ++   +   K MQK        ++ 
Sbjct: 514 DWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFM 573

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            ++     +G+   A EI+     +   G +   V T++ ++    +    + A+++ ++
Sbjct: 574 PIIHGFARSGDMRRALEIF---DMMRWSGCIPT-VHTFNALILGLVEKCQMEKAVEILDE 629

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M  AG++PN  T++++++  A+ G   +A   F ++   G E +      LL+AC ++ +
Sbjct: 630 MSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGR 689

Query: 449 FDRAFRLFR---SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
              A  + R   S  + +         DG   R    E  +           P+ H    
Sbjct: 690 MQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIH---- 745

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
                      TY   + ACC   D  R    + EM  VG+ PN  ++T LI     +  
Sbjct: 746 -----------TYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASL 794

Query: 564 VEGALQC 570
            E AL+C
Sbjct: 795 PEKALKC 801


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 119/231 (51%), Gaps = 15/231 (6%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTL 289
           G+ +D   A + +D  ++   S N+    T+I   G+C +   + A  + + ++S  +  
Sbjct: 282 GRTKD---AFKVFDEMRERGVSCNIVTYNTLIG--GLCREMKANEANKVMDQMKSYVINP 336

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  +N+L++   +   L   L + ++++  G+   + +YN+L+   C  G+T  A ++ 
Sbjct: 337 NLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKM- 395

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             VK +E +G+ K    TY+ ++  FA +   + A++++  M   G+ P+  T+S LI+ 
Sbjct: 396 --VKEMEERGI-KPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHG 452

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCN-ILLQACVEACQFDRAFRLFR 457
               G + +A  LF+ M++   EPN    N ++L  C E   + RA RLFR
Sbjct: 453 FCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSY-RALRLFR 502



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 151/360 (41%), Gaps = 51/360 (14%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           E  K  DL+  LR +  S      PN+ I  T+ID C   G+  K++ ++ ++    +  
Sbjct: 178 EIEKSFDLLVELREFGFS------PNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVA 231

Query: 290 NIYVFNSLMNVNAHDL------KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
           N + +  L+    H L      K   E+Y+ MQ+ GV  ++ +YN ++   C  G T  A
Sbjct: 232 NEWTYTVLI----HGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDA 287

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            +++ E++    +GV   ++ TY+T++           A KV + M S  + PN IT+++
Sbjct: 288 FKVFDEMRE---RGV-SCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNT 343

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-----RS 458
           LI+   + G + +A+ L  ++   G  P+    N+L+           A ++      R 
Sbjct: 344 LIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERG 403

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDK-QSITNTPNFVPNSH-YSSFDKRFSFK---- 512
              SK    +  D    +D   NME   + +S       VP+ H YS     F  K    
Sbjct: 404 IKPSKVTYTILIDTFARSD---NMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMN 460

Query: 513 ---------------PTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILI 555
                          P    YN ++   C +   YR   L  +M    L+PN  S++ LI
Sbjct: 461 EASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLI 520



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/321 (20%), Positives = 127/321 (39%), Gaps = 55/321 (17%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           ++Y    +I  C   G+  KS  +  +LR    + N+ ++ +L++      +++   +++
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M K G++A+  +Y +L+      G      E+Y   + ++  GV   +++TY+ ++  
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMY---EKMQEHGVFP-NLYTYNCVMNQ 277

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                  + A KV ++M   GV+ N +T+++LI          +A  + ++M      PN
Sbjct: 278 LCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPN 337

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
               N L+       +  +A  L R                                   
Sbjct: 338 LITYNTLIDGFCSVGKLGKALSLCRDL--------------------------------- 364

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHIS 550
                         K     P+  TYN+L+   C   D      ++ EM   G+ P+ ++
Sbjct: 365 --------------KSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVT 410

Query: 551 WTILIDACGGSGNVEGALQCR 571
           +TILID    S N+E A+Q R
Sbjct: 411 YTILIDTFARSDNMETAIQLR 431



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 110/244 (45%), Gaps = 49/244 (20%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           A +  D  K ++ +PN+    T+ID  G C  G   K+ ++  DL+S+ ++ ++  +N L
Sbjct: 322 ANKVMDQMKSYVINPNLITYNTLID--GFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVL 379

Query: 298 MN-------------------------------------VNAHDLKFTLEVYKNMQKLGV 320
           ++                                       + +++  +++  +M++LG+
Sbjct: 380 VSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGL 439

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEV--KHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           + D+ +Y++L+   C+ G    A  ++  +  K LE   V+      Y+T++  +     
Sbjct: 440 VPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVI------YNTMILGYCKEGS 493

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              AL++  DM    + PN  ++S LI        +++A  L E+M+ +G +P+   CN+
Sbjct: 494 SYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNL 553

Query: 439 LLQA 442
           + +A
Sbjct: 554 ISRA 557



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 19/223 (8%)

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
           E+K  + LDV+++  ++K   +A   + +  +  ++   G +PN + +++LI+ C   G 
Sbjct: 154 ESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGE 213

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
           +E+A  LF EM + G   N     +L+    +     + F ++      +        Y 
Sbjct: 214 IEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKM---QEHGVFPNLYT 270

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILMKACCTDYYR 531
            N   + N   KD ++            +  FD  +         TYN L+   C +   
Sbjct: 271 YNC--VMNQLCKDGRT---------KDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKA 319

Query: 532 VKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ-CR 571
            +A  +M++M++  ++PN I++  LID     G +  AL  CR
Sbjct: 320 NEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCR 362


>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
 gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
          Length = 536

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 123/268 (45%), Gaps = 20/268 (7%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           AL  Y   ++    PN Y    +I  C   G   K+  ++E++ +   + N+  +N+L+ 
Sbjct: 222 ALAFYREMRRSRIYPNSYTLNLVICACCKLGRLDKANVVFEEMGTMGFSPNVASYNTLIA 281

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
              N   L   +++   M+K GV  D+ ++N L+   C  G    A +++GE+K +    
Sbjct: 282 GYCNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMS--- 338

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            L     TY+ ++  ++ A   +M  ++ E+M    V  + +T+++LI      G  ++A
Sbjct: 339 -LSPTTVTYNILINGYSKAGNCEMGNRLFEEMSRFQVKADILTYNALILGLCKEGKTKKA 397

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSK------------T 464
            +L  E+ + G  PN+   + L+   CV+  Q +RAF++++S   S             +
Sbjct: 398 AYLVRELDEKGLVPNASTFSALIYGQCVQK-QSERAFQIYKSMIKSSFTPCDQTFRMLLS 456

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITN 492
                EDYDG    +  M ++ K    N
Sbjct: 457 TFCENEDYDGAVQLLEEMLNRHKAPDVN 484



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 130/304 (42%), Gaps = 32/304 (10%)

Query: 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
           N Y+ +SL+N +  D+   L  Y+ M++  +  +  + N+++ ACC  G    A  ++ E
Sbjct: 207 NAYL-SSLLNFSRGDI--ALAFYREMRRSRIYPNSYTLNLVICACCKLGRLDKANVVFEE 263

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +  +        +V +Y+T++  + +      A+K++  M   GV P+ +T+++L+N   
Sbjct: 264 MGTMG----FSPNVASYNTLIAGYCNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVNGFC 319

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--------L 461
             G +++A  LF EM      P +   NIL+    +A   +   RLF   +        L
Sbjct: 320 KVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEEMSRFQVKADIL 379

Query: 462 SKTQVALGEDYDGNTDRISNM--EHKDKQSITNTPNFVPNSHYSSFDK------------ 507
           +   + LG   +G T + + +  E  +K  + N   F    +     K            
Sbjct: 380 TYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQCVQKQSERAFQIYKSM 439

Query: 508 -RFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
            + SF P   T+ +L+   C   DY     L+ EM     +P+  +   L    G  G V
Sbjct: 440 IKSSFTPCDQTFRMLLSTFCENEDYDGAVQLLEEMLNRHKAPDVNNLYELCAGLGQCGKV 499

Query: 565 EGAL 568
           + A+
Sbjct: 500 KTAM 503


>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
          Length = 927

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 6/238 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +L+ N +R F    ++  A+R     +K    P       II      GD  ++  I++ 
Sbjct: 514 VLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDM 573

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R       ++ FN+L+   V    ++  +E+   M   G+  +  +Y  ++      G+
Sbjct: 574 MRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGD 633

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A E + ++K    +G L+LDV+TY  ++K    +   Q AL V  +M S  +  NT 
Sbjct: 634 TGKAFEYFTKLK---TEG-LELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTF 689

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            ++ LI+  A  G V +A  L ++M Q G +P+       + AC +A    RA +  +
Sbjct: 690 VYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQ 747



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 133/311 (42%), Gaps = 20/311 (6%)

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNM 315
           I  T++D   I G+  K   +++ L+    T ++  +  L+N  +    +   LEV K M
Sbjct: 410 IYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMM 469

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           +  G+  +M +Y++L+       +   A  ++ +V     K  LK DV  Y+ I++ F  
Sbjct: 470 EVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDV----VKDGLKPDVVLYNNIIRAFCG 525

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
                 A++  ++M      P T T+  +I+  A +G + +A+ +F+ M  +GC P    
Sbjct: 526 MGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHT 585

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
            N L+   VE CQ ++A  +    +L+            N    + + H    S+ +T  
Sbjct: 586 FNALILGLVEKCQMEKAVEILDEMSLAGISP--------NEHTYTTIMH-GYASLGDTGK 636

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTI 553
                 Y +  K    +    TY  L+KACC       AL    EM +  +  N   + I
Sbjct: 637 AF---EYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNI 693

Query: 554 LIDACGGSGNV 564
           LID     G+V
Sbjct: 694 LIDGWARRGDV 704



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 6/192 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           SPN +   TI+      GD  K+   +  L+++ + L++Y + +L+     +  ++  L 
Sbjct: 615 SPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALA 674

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M    +  +   YNIL+      G+   A E+   ++ ++ +GV + D+ TY++ +
Sbjct: 675 VTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAEL---MQQMKQEGV-QPDIHTYTSFI 730

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A   Q A K  ++M   GV PN  T+++LI+  A A L E+A+  F+EM  AG +
Sbjct: 731 NACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLK 790

Query: 431 PNSQCCNILLQA 442
           P+    + L+ +
Sbjct: 791 PDKAVYHCLMTS 802



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 127/307 (41%), Gaps = 26/307 (8%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN 328
           D+  + A++ED+    +  ++ ++N+++       ++   +   K MQK        ++ 
Sbjct: 493 DWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFM 552

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            ++     +G+   A EI+     +   G +   V T++ ++    +    + A+++ ++
Sbjct: 553 PIIHGFARSGDMRRALEIF---DMMRWSGCIPT-VHTFNALILGLVEKCQMEKAVEILDE 608

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M  AG++PN  T++++++  A+ G   +A   F ++   G E +      LL+AC ++ +
Sbjct: 609 MSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGR 668

Query: 449 FDRAFRLFR---SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
              A  + R   S  + +         DG   R    E  +           P+ H    
Sbjct: 669 MQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIH---- 724

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
                      TY   + ACC   D  R    + EM  VG+ PN  ++T LI     +  
Sbjct: 725 -----------TYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASL 773

Query: 564 VEGALQC 570
            E AL+C
Sbjct: 774 PEKALKC 780


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 147/356 (41%), Gaps = 25/356 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I +C  V   GK R   S +       K   +  M   +  I      G+   +  ++E 
Sbjct: 222 ITYCKMVHILGKARQFQSMVALIQEMGKE-GALCMDAFKIAIKSFAAAGEIKNAVGVFEM 280

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDL--KFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R+      +  FN L+   A +   +   +V+  M+      D+ SY  L+ A C A N
Sbjct: 281 MRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDR-YAPDLRSYTALMLAWCNARN 339

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            V A  ++ E+  LE    LK DV  ++T+++     +    A+K+ E M + G  PN  
Sbjct: 340 LVEAGRVWNEM--LENG--LKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVW 395

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++ LI      G ++ AM  FEEM   GC+P+      LL     A + DR   L    
Sbjct: 396 TYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEM 455

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
           T  K     G  Y+     ++N          N P+     +     K    +PT  TYN
Sbjct: 456 T-QKGCPPDGRTYNALIKLLTN---------RNMPDDAARIYKKMIKK--GLEPTIHTYN 503

Query: 520 ILMKA---CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
           ++MK+      +Y    A+  EM   G+ P+  S+T+ I+     G  E A  C++
Sbjct: 504 MMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEA--CKY 557



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 98/234 (41%), Gaps = 46/234 (19%)

Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIY 292
           R+LV A R ++   ++   P++ +  T+I+  G+     +  A+  +E ++++    N++
Sbjct: 338 RNLVEAGRVWNEMLENGLKPDVVVHNTMIE--GLLRGQRRPEAVKMFELMKAKGPAPNVW 395

Query: 293 VFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILL------------------- 331
            +  L+  +     +   +  ++ MQ +G   D+A+Y  LL                   
Sbjct: 396 TYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEM 455

Query: 332 --KACCLAGNTV--------------LAQEIYGEVKHLEAKGVLKLDVFTYSTIVK-VFA 374
             K C   G T                A  IY   K +  KG L+  + TY+ ++K  F 
Sbjct: 456 TQKGCPPDGRTYNALIKLLTNRNMPDDAARIY---KKMIKKG-LEPTIHTYNMMMKSYFL 511

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
             + + M   V E+M   G+ P+  +++  IN     G  E+A    EEM+Q G
Sbjct: 512 GGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKG 565


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 136/299 (45%), Gaps = 32/299 (10%)

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVM 321
           D  G+ G  +KSR +           +I+ FN L++  A   KF L +   + MQ+LG+ 
Sbjct: 68  DAIGLFGGMVKSRPL----------PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGIS 117

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            ++ +YNIL+   C      LA  + G++  L  +      + T S+++  +   K    
Sbjct: 118 HNLYTYNILINCFCRRSQISLALALLGKMMKLGYEP----SIVTLSSLLNGYCHGKRISD 173

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A+ + + M+  G  P+TIT+++LI+         +A+ L + M+Q GC+PN     +++ 
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 233

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              +    D AF L      +K +  +   Y    D +    H+D             + 
Sbjct: 234 GLCKRGDIDLAFNLLNKMEAAKIEANV-VIYSTVIDSLCKYRHEDDAL----------NL 282

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILIDA 557
           ++  + +   +P   TY+ L+ +C  +Y R      L+++M    ++PN +++  LIDA
Sbjct: 283 FTEMENK-GVRPNVITYSSLI-SCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDA 339



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 111/218 (50%), Gaps = 12/218 (5%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEV 311
           +PN+     +ID     G  +++  +Y+++  +++  +I+ ++SL+N    HD    L+ 
Sbjct: 327 NPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD---RLDE 383

Query: 312 YKNMQKLGVMAD----MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            K+M +L +  D    + +YN L+   C A       E++ E+      G    +  TY+
Sbjct: 384 AKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVG----NTVTYT 439

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           T++  F  A+    A  V + M+S GV PN +T+++L++     G +E+AM +FE + ++
Sbjct: 440 TLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 499

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
             EP     NI+++   +A + +  + LF S +L   +
Sbjct: 500 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 537



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 137/319 (42%), Gaps = 26/319 (8%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN+     +++  G+C  GD   +  +   + +  +  N+ +++++++           L
Sbjct: 223 PNLVTYGVVVN--GLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDAL 280

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            ++  M+  GV  ++ +Y+ L+   C       A  +  ++  +E K  +  +V T++ +
Sbjct: 281 NLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDM--IERK--INPNVVTFNAL 336

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  F        A K+ ++M+   + P+  T+SSLIN       +++A H+FE M+   C
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            PN    N L+    +A + D    LFR   +S+  +       GNT   + + H   Q+
Sbjct: 397 FPNVVTYNTLINGFCKAKRIDEGVELFRE--MSQRGLV------GNTVTYTTLIHGFFQA 448

Query: 490 IT-NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSP 546
              +    V     S         P   TYN L+   C +    KA++    ++   + P
Sbjct: 449 RDCDNAQMVFKQMVSD-----GVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 503

Query: 547 NHISWTILIDACGGSGNVE 565
              ++ I+I+    +G VE
Sbjct: 504 TIYTYNIMIEGMCKAGKVE 522



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 108/249 (43%), Gaps = 12/249 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +++   +    K R    AL  +   +     PN+    ++I        +  +  +  D
Sbjct: 261 VIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSD 320

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  N+  FN+L++    + K     ++Y  M K  +  D+ +Y+ L+   C+   
Sbjct: 321 MIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM--- 377

Query: 340 TVLAQEIYGEVKHLEAKGVLK---LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
                +   E KH+    + K    +V TY+T++  F  AK     +++  +M   G+  
Sbjct: 378 ----HDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVG 433

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           NT+T+++LI+    A   + A  +F++M+  G  PN    N LL    +  + ++A  +F
Sbjct: 434 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 493

Query: 457 RSWTLSKTQ 465
                SK +
Sbjct: 494 EYLQRSKME 502



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 107/251 (42%), Gaps = 45/251 (17%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYM-KSRAIY 279
           + F   +  F K+  LV A + YD   K    P+++   ++I+  G C  D + +++ ++
Sbjct: 331 VTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN--GFCMHDRLDEAKHMF 388

Query: 280 EDLRSQNVTLNIYVFNSLMN-------------------------------------VNA 302
           E + S++   N+  +N+L+N                                       A
Sbjct: 389 ELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQA 448

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
            D      V+K M   GV  ++ +YN LL   C  G    A  ++   ++L+ +  ++  
Sbjct: 449 RDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF---EYLQ-RSKMEPT 504

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           ++TY+ +++    A   +    +   +   GV P+ I ++++I+     GL E+A  LF 
Sbjct: 505 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFR 564

Query: 423 EMLQAGCEPNS 433
           +M + G  P+S
Sbjct: 565 KMREDGPLPDS 575


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 154/341 (45%), Gaps = 47/341 (13%)

Query: 265 VCGICGD--YMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV 320
           +CG+ G    +++  ++ ++  +    +   + +L++      ++K    ++  M ++G+
Sbjct: 257 ICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGL 316

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             ++ +Y  L    C +G    A E+  E+     +  L+L++ TY+TIV     A    
Sbjct: 317 TPNVVTYTALADGLCKSGELDTANELLHEM----CRKGLQLNISTYNTIVNGLCKAGNIL 372

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A+K+ E+M  AG+ P+TIT+++L++A    G + +A  L  EML  G +P     N+L+
Sbjct: 373 QAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLM 432

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG--------NTDRISNMEHKD--KQSI 490
                + + +   RL + W L K  +     Y+         N  RIS   ++    Q +
Sbjct: 433 NGLCMSGKLEDGERLLK-WMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGV 491

Query: 491 ---TNTPNFVPNSHYSS-------------FDKRFSFKPTTTTYNILMKACCTDYYRVKA 534
              +NT N +   H  +              +KRF+   T ++YN L+K     +++ K 
Sbjct: 492 VPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNL--TASSYNALIKG----FFKRKK 545

Query: 535 LM------NEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L+       EMR  GL  +   + + +D     GN+E  L+
Sbjct: 546 LLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLE 586



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 137/318 (43%), Gaps = 24/318 (7%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--L 309
           P++    TIID  G C  G+  K   + ++++ + +  N+Y ++S++ +     K     
Sbjct: 143 PDVVSYTTIID--GYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGE 200

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V + M K GV  D   Y  L+   C  GNT  A +++ E   +EA+ ++  D   +S +
Sbjct: 201 KVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSE---MEAREIVP-DSIAFSAL 256

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +   + +     A K+  +M+  G  P+ +T+++LI+     G +++A  L  +M+Q G 
Sbjct: 257 ICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGL 316

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            PN      L     ++ + D A  L         Q+ +        + I N        
Sbjct: 317 TPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNI-----STYNTIVN-------G 364

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
           +    N +         K     P T TY  LM A       VKA  L+ EM   GL P 
Sbjct: 365 LCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPT 424

Query: 548 HISWTILIDACGGSGNVE 565
            +++ +L++    SG +E
Sbjct: 425 VVTFNVLMNGLCMSGKLE 442



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 136/321 (42%), Gaps = 65/321 (20%)

Query: 274 KSRAIYEDLRSQNVTL-----NIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           ++R  ++ L +  V L     N+Y+  + ++     L   L+V+    +LGV  +  SYN
Sbjct: 57  EARKFFDKLLNYGVALSAGSCNLYL--TCLSSKRDMLGMVLKVFSEFPQLGVCWNTESYN 114

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           IL+ +    G     +E +  +  +E KG +  DV +Y+TI+  +      Q  +++ ++
Sbjct: 115 ILMNSLFRLGKI---REAHHLLMRMEFKGCIP-DVVSYTTIIDGYCHVGELQKVVQLVKE 170

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M   G+ PN  T+SS+I     +G V +   +  EM++ G  P+      L+    +   
Sbjct: 171 MQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGN 230

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS-HYSSF-- 505
              A++LF                       S ME ++          VP+S  +S+   
Sbjct: 231 TQAAYKLF-----------------------SEMEARE---------IVPDSIAFSALIC 258

Query: 506 -----------DKRFS------FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
                      DK F+      F+P   TY  L+   C      KA  L N+M  +GL+P
Sbjct: 259 GLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTP 318

Query: 547 NHISWTILIDACGGSGNVEGA 567
           N +++T L D    SG ++ A
Sbjct: 319 NVVTYTALADGLCKSGELDTA 339



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 112/238 (47%), Gaps = 22/238 (9%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K  +++ A++  +  K+    P+     T++D     G+ +K+R +  ++  + +   + 
Sbjct: 367 KAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVV 426

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            FN LMN    +  L+    + K M + G+M + A+YN ++K  C+  N  ++ EIY   
Sbjct: 427 TFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIY--- 483

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + + A+GV+  D  TY+ ++K    A+  + A  + ++M+         ++++LI     
Sbjct: 484 RGMCAQGVVP-DSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFK 542

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNIL-------------LQAC---VEACQFDRA 452
              + +A  LFEEM + G   +++  N+              L+ C   +E C  D+A
Sbjct: 543 RKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIEKCLLDKA 600


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 100/450 (22%), Positives = 188/450 (41%), Gaps = 57/450 (12%)

Query: 124  IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183
            IREGRID       ++ +        F    +  L      ++  G VE  + +  V+E 
Sbjct: 666  IREGRIDYAFWFFHQMKK--------FLSPDYVTLCTLIPGVVRHGRVEDAIKV--VMEF 715

Query: 184  FRLPVKELDEEF--RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241
                  + + +F   +++  + + ++  AI +A      +IL CN V +      ++  +
Sbjct: 716  VHQACLQTNSQFWGELMECILTEAEIEEAISFA------EILVCNSVCQ--DDHVMLPLI 767

Query: 242  RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301
            +     KK L + N++              + K+  I+  L S N      + + L+  N
Sbjct: 768  KVLCKRKKALDAQNVF------------DKFTKNLGIHPTLESYNC-----LMDGLLGSN 810

Query: 302  AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
              +    LE++++M+  G   +  +YN+LL A    G +    ++Y     + ++G  + 
Sbjct: 811  FTEK--ALELFEDMKSAGTHPNNFTYNLLLDA---HGKSKRINKLYDLYSEMRSRGC-EP 864

Query: 362  DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
            +  T++ I+     +     AL +  +++S   +P   T+  LI+    AG  EQAM +F
Sbjct: 865  NAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIF 924

Query: 422  EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EEML  GC PNS   NIL+    ++ + D A  LF+       +  +  D    T  +  
Sbjct: 925  EEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKM----VKEGIRPDLKSYTILV-- 978

Query: 482  MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEM 539
                  + +  T        Y    K     P T +YN ++          +A  L +EM
Sbjct: 979  ------ECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEM 1032

Query: 540  RTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +  G+SP+  ++  LI   G +G V+ A++
Sbjct: 1033 KNRGISPDLYTYNALILHLGIAGKVDVAVK 1062



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 152/373 (40%), Gaps = 33/373 (8%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           +R  G+ R +  A   +         P++     +ID     G   K++ +Y  +R+ + 
Sbjct: 277 IRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSH 336

Query: 288 TLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
           + +   + +LM+      DL+     +  M+  G   D+ +Y IL++A C +G+   A +
Sbjct: 337 SPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFD 396

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +   +  +  KG+   ++ TY+T++     A+    AL++ E+M S GV P   ++   I
Sbjct: 397 M---LDVMTTKGIFP-NLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFI 452

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW---TLS 462
           +    +G   +A+  FE M + G  P+   CN  L    E  +   A  +F       LS
Sbjct: 453 DYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLS 512

Query: 463 KTQVAL---------GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD------- 506
              V               D  T  +S M  K  +      N + N+ Y +         
Sbjct: 513 PDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKM 572

Query: 507 ----KRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGG 560
               K     PT  TYNIL+     +   +KAL     M   G  PN I++  L+D    
Sbjct: 573 FGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSK 632

Query: 561 SGNVEGALQ--CR 571
           +  V+ AL+  CR
Sbjct: 633 NDAVDLALKMFCR 645



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 6/227 (2%)

Query: 233  KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
            K  +L  AL  Y        SP       +ID     G   ++  I+E++       N  
Sbjct: 878  KSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSV 937

Query: 293  VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            ++N L+N    + ++ F  E++K M K G+  D+ SY IL++  C+ G    A + + E+
Sbjct: 938  IYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEEL 997

Query: 351  KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
            K       L  D  +Y+ I+     ++    AL +  +M + G++P+  T+++LI     
Sbjct: 998  KLTG----LDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGI 1053

Query: 411  AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            AG V+ A+ ++EE+   G EP+    N L++    +   D+AF +F+
Sbjct: 1054 AGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFK 1100



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 143/355 (40%), Gaps = 31/355 (8%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           AL+ Y         P+M     ++   G  GD  K   + E+++S  +  NIY +   + 
Sbjct: 219 ALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIR 278

Query: 300 V--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
               A  +     ++K M   G   D+ +Y +L+ A C AG    A+E+Y +++      
Sbjct: 279 ALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSP 338

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
               D  TY T++  F      +   +   +M   G  P+ +T++ LI A   +G V++A
Sbjct: 339 ----DRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRA 394

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVA--LGEDY 472
             + + M   G  PN    N ++   ++A + D A  L     S  +  T  +  L  DY
Sbjct: 395 FDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDY 454

Query: 473 DGNT----DRISNMEHKDKQSITNTPNFVPNSHYSSFD--------------KRFSFKPT 514
            G +      I   E   K+ I  +      S Y+  +               +    P 
Sbjct: 455 YGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPD 514

Query: 515 TTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           + TYN+LMK  +      +   L++EM + G  P+ +    LI+    +G V+ A
Sbjct: 515 SVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAA 569



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 11/248 (4%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
           F+  +GK  D   A+  ++  KK    P++  C   +      G   ++  I+ DL    
Sbjct: 451 FIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCG 510

Query: 287 VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           ++ +   +N LM     A  +    ++   M   G   D+   N L+     AG    A 
Sbjct: 511 LSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAW 570

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           +++G +K+L+    L   V TY+ ++           AL++   M  +G  PNTIT++SL
Sbjct: 571 KMFGRLKNLK----LAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSL 626

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
           ++  +    V+ A+ +F  M    C P+    N ++   +   + D AF     W   + 
Sbjct: 627 LDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAF-----WFFHQM 681

Query: 465 QVALGEDY 472
           +  L  DY
Sbjct: 682 KKFLSPDY 689



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 115/268 (42%), Gaps = 35/268 (13%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+  MQK  +  ++ +Y  + KA  + G   + +  +   K  E   +L  + ++Y+ ++
Sbjct: 153 VFDLMQKKVIYRNLTTYMTIFKALSIKGG--IGRAPFALRKMTEVGFIL--NAYSYNGLI 208

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            +     +   ALKV + M+S G+ P+  T+S+L+ A    G   + M+L EEM   G  
Sbjct: 209 HLLLPG-FCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLR 267

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISNM 482
           PN     I ++A   A + D A+ +F+           ++ T +       G  D+   +
Sbjct: 268 PNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKEL 327

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMR 540
             K + S                    S  P   TY  LM       D   VK   NEM 
Sbjct: 328 YVKMRAS--------------------SHSPDRVTYITLMDKFGKVGDLETVKRFWNEME 367

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGAL 568
             G +P+ +++TILI+A   SG+V+ A 
Sbjct: 368 VDGYAPDVVTYTILIEALCKSGDVDRAF 395



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 129/299 (43%), Gaps = 44/299 (14%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSL-MNVNAHDLKFTLEVYKNMQKLGVMADMASYNI 329
           D M+ + IY     +N+T  + +F +L +        F L   + M ++G + +  SYN 
Sbjct: 155 DLMQKKVIY-----RNLTTYMTIFKALSIKGGIGRAPFAL---RKMTEVGFILNAYSYNG 206

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           L+    L G    A ++Y   K + ++G +K  + TYS ++         +  + + E+M
Sbjct: 207 LIH-LLLPGFCNEALKVY---KRMISEG-MKPSMKTYSALMVALGRRGDTRKIMNLLEEM 261

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
            S G+ PN  T++  I A   A  ++ A  +F+EM   GC P+     +L+ A   A + 
Sbjct: 262 KSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKL 321

Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
           D+A  L+     S            + DR++ +   DK         V         KRF
Sbjct: 322 DKAKELYVKMRASSH----------SPDRVTYITLMDKFGKVGDLETV---------KRF 362

Query: 510 -------SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
                   + P   TY IL++A C   D  R   +++ M T G+ PN  ++  +I  CG
Sbjct: 363 WNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMI--CG 419



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 6/197 (3%)

Query: 222  ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
            +++   +  FGK  ++  A   +    K    P++     +++   I G   ++   +E+
Sbjct: 937  VIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEE 996

Query: 282  LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
            L+   +  +   +N ++N    +  L   L ++  M+  G+  D+ +YN L+    +AG 
Sbjct: 997  LKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGK 1056

Query: 340  TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              +A ++Y E++ +     L+  VFTY+ +++  + +     A  V + M+  G +PNT 
Sbjct: 1057 VDVAVKMYEELQLVG----LEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTE 1112

Query: 400  TWSSLINACANAGLVEQ 416
            T++ L N    AGLV  
Sbjct: 1113 TFAQLPNKYPRAGLVHN 1129



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 138/352 (39%), Gaps = 42/352 (11%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P++ I  ++I+     G    +  ++  L++  +   +  +N L+     + K    LE+
Sbjct: 548 PDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALEL 607

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTV--LAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           + +M + G   +  ++N LL   CL+ N    LA +++  +  +        DV TY+TI
Sbjct: 608 FGSMTESGCPPNTITFNSLLD--CLSKNDAVDLALKMFCRMTMMNCNP----DVLTYNTI 661

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A      M    ++P+ +T  +LI      G VE A+ +  E +   C
Sbjct: 662 IYGLIREGRIDYAFWFFHQM-KKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQAC 720

Query: 430 -EPNSQCCNILLQ------------------ACVEACQFDRA-FRLFRSWTLSKTQVALG 469
            + NSQ    L++                   C   CQ D     L +     K  +   
Sbjct: 721 LQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQ 780

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS-----FD--KRFSFKPTTTTYNILM 522
             +D  T  +    H   +S     + +  S+++      F+  K     P   TYN+L+
Sbjct: 781 NVFDKFTKNLG--IHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLL 838

Query: 523 KACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
            A        ++  L +EMR+ G  PN I+  I+I A   S N+  AL   +
Sbjct: 839 DAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYY 890


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 122/266 (45%), Gaps = 26/266 (9%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L++ + M+   +   + +Y I++   C  G    A   + E   +E KG+ K +VFTY++
Sbjct: 250 LDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSE---METKGI-KANVFTYNS 305

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F     W    ++  DM++  +TPN +T+S+LI++    G + +A  L+ EM+  G
Sbjct: 306 LIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRG 365

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI-SNMEHKDK 487
            EPN+   N L+       + D A ++          V+ G D D  T  I  N   K K
Sbjct: 366 IEPNTITYNSLIYGLCNDKRLDEANQMM------DLMVSKGCDPDIWTYNILINGFCKAK 419

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFK---PTTTTYNILMKACCTDYYRV--KALMNEMRTV 542
           Q       F          ++ S +     T TY+ L++  C     +  K +  EM + 
Sbjct: 420 QVDDGMRLF----------RKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQ 469

Query: 543 GLSPNHISWTILIDACGGSGNVEGAL 568
           G+ P  +++ IL+D    +G +E AL
Sbjct: 470 GVHPGIMTYAILLDGLCDNGELEEAL 495



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 41/344 (11%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           FC+F    G+  D    LR     K    +PN+     +ID     G   +++ +Y ++ 
Sbjct: 310 FCSF----GRWDDGAQLLRDMITRK---ITPNVVTFSALIDSLVKEGKLTEAKDLYNEMI 362

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           ++ +  N   +NSL+    N   L    ++   M   G   D+ +YNIL+   C A    
Sbjct: 363 TRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVD 422

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
               ++   + +  +G++  D  TYST+++ F  ++   +A KV ++M+S GV P  +T+
Sbjct: 423 DGMRLF---RKMSLRGMIA-DTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTY 478

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           + L++   + G +E+A+ + ++M +   E +    NI++     A + D A+ LF S   
Sbjct: 479 AILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLP- 537

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSIT-NTPNFVPNSHYSSFDKRF------SFKPT 514
                             S    +D QS           S  S  D  F       ++P 
Sbjct: 538 ------------------SKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPD 579

Query: 515 TTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILID 556
             TYN L++A     D      L+ EM+  G S +  +  I++D
Sbjct: 580 GCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMD 623



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 121/292 (41%), Gaps = 20/292 (6%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASY 327
           G +     +  D+ ++ +T N+  F++L++    + K T   ++Y  M   G+  +  +Y
Sbjct: 314 GRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITY 373

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N L+   C   N     E    +  + +KG    D++TY+ ++  F  AK     +++  
Sbjct: 374 NSLIYGLC---NDKRLDEANQMMDLMVSKGC-DPDIWTYNILINGFCKAKQVDDGMRLFR 429

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            M   G+  +T+T+S+LI     +  +  A  +F+EM+  G  P      ILL    +  
Sbjct: 430 KMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNG 489

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
           + + A  +       K ++ +G  Y+     + N    D             S + S   
Sbjct: 490 ELEEALGILDQMHKCKMELDIGI-YNIIIHGMCNANKVDDAW----------SLFCSLPS 538

Query: 508 RFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           +   K    +YNI++   C  +      AL  +M+  G  P+  ++  LI A
Sbjct: 539 K-GVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRA 589



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 111/298 (37%), Gaps = 50/298 (16%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A+ + +  + +  ++Y  N ++N       L F       + KLG   +  ++N LL   
Sbjct: 111 ALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGL 170

Query: 335 CLAGNTVLAQEIYGEV---KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           CL G    A E+   +   +H+        D+ T +TIV           A+ +   M++
Sbjct: 171 CLEGRVFEAVELVDCMVLSQHVP-------DLITLNTIVNGLCLKDRVSEAVDLIARMMA 223

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G  PN  T+  ++N    +G    A+ L  +M     +P+     I++    +  + D 
Sbjct: 224 NGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDD 283

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK---- 507
           A   F                       S ME K  ++   T N +  S + SF +    
Sbjct: 284 ALSFF-----------------------SEMETKGIKANVFTYNSLIGS-FCSFGRWDDG 319

Query: 508 --------RFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILI 555
                        P   T++ L+ +   +      K L NEM T G+ PN I++  LI
Sbjct: 320 AQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLI 377



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 109/276 (39%), Gaps = 44/276 (15%)

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            G++A    Y+++L  C                K +E KG+   D++T + ++  F   +
Sbjct: 97  FGLLARTKQYDLVLALC----------------KQMELKGI-AYDLYTLNIMINCFCRRR 139

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
               A      +   G  PNT+T+++L+N     G V +A+ L + M+ +   P+    N
Sbjct: 140 KLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLN 199

Query: 438 ILLQACVEACQFDRAFRLFRSWTLS---KTQVALGEDYD-----GNT----DRISNMEH- 484
            ++       +   A  L      +     Q   G   +     GNT    D +  MEH 
Sbjct: 200 TIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHR 259

Query: 485 KDKQSITNTPNFVPN-----------SHYSSFDKRFSFKPTTTTYNILMKACCT--DYYR 531
           K K  +      + N           S +S  + +   K    TYN L+ + C+   +  
Sbjct: 260 KIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETK-GIKANVFTYNSLIGSFCSFGRWDD 318

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              L+ +M T  ++PN ++++ LID+    G +  A
Sbjct: 319 GAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEA 354


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 145/308 (47%), Gaps = 20/308 (6%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHD-LKFTLE 310
           +PN+    ++ID     G  +++  +++++  +++  NI  +NSL+N    HD L    +
Sbjct: 307 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQ 366

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M     + D+ +YN L+   C A   V   E++   + +  +G++  +  TY+T++
Sbjct: 367 IFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF---RDMSRRGLVG-NTVTYTTLI 422

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F  A     A  V + M+S GV PN +T+++L++     G +E+AM +FE + ++  E
Sbjct: 423 HGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKME 482

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P+    NI+ +   +A + +  + LF S +L   +     D       IS    K  +  
Sbjct: 483 PDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVK----PDVIAYNTMISGFCKKGLKEE 538

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNH 548
             T  F+               P + TYN L++A   D  +  +  L+ EMR+   + + 
Sbjct: 539 AYTL-FIKMKEDGPL-------PDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDA 590

Query: 549 ISWTILID 556
            ++ ++ D
Sbjct: 591 STYGLVTD 598



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 128/278 (46%), Gaps = 20/278 (7%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           V N L      DL   L +   M+K  + AD+  Y+ ++ + C   +   A  ++ E   
Sbjct: 211 VINGLCKRGEPDL--ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTE--- 265

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           ++ KG+ + DVFTYS+++    +   W  A ++  DML   + PN +T++SLI+A A  G
Sbjct: 266 MDNKGI-RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEG 324

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            + +A  LF+EM+Q   +PN    N L+      C  DR     + +TL  ++  L +  
Sbjct: 325 KLIEAEKLFDEMIQRSIDPNIVTYNSLING---FCMHDRLDEAQQIFTLMVSKDCLPDVV 381

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYY 530
             NT  + N   K K+ +     F   S       R      T TY  L+      +D  
Sbjct: 382 TYNT--LINGFCKAKKVVDGMELFRDMS-------RRGLVGNTVTYTTLIHGFFQASDCD 432

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             + +  +M + G+ PN +++  L+D    +G +E A+
Sbjct: 433 NAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAM 470



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 113/246 (45%), Gaps = 6/246 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +++   +    K R +  AL  +         P+++   ++I      G +  +  +  D
Sbjct: 241 VIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSD 300

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  N+  FNSL++  A + K     +++  M +  +  ++ +YN L+   C+   
Sbjct: 301 MLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDR 360

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              AQ+I+     + +K  L  DV TY+T++  F  AK     +++  DM   G+  NT+
Sbjct: 361 LDEAQQIF---TLMVSKDCLP-DVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTV 416

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+++LI+    A   + A  +F++M+  G  PN    N LL    +  + ++A  +F   
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476

Query: 460 TLSKTQ 465
             SK +
Sbjct: 477 QKSKME 482



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 139/327 (42%), Gaps = 33/327 (10%)

Query: 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302
           +YD  ++ LS  N  +   + +   + G+ +KSR             +I  F+ L++  A
Sbjct: 28  SYDGYREKLSR-NALLHLKLDEAVDLFGEMVKSRPFP----------SIVEFSKLLSAIA 76

Query: 303 HDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
              KF L +   + M+ LGV  ++ +YNI++   C       A  I G++  L       
Sbjct: 77  KMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGP--- 133

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
             + T ++++  F        A+ + + M+  G  P+T+T+++L++         +A+ L
Sbjct: 134 -SIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 192

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
            E M+  GC+P+      ++    +  + D A  L       K +  +   Y    D + 
Sbjct: 193 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADV-VIYSTVIDSLC 251

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMN 537
              H D     +  N      ++  D +   +P   TY+ L+ +C  +Y R      L++
Sbjct: 252 KYRHVD-----DALNL-----FTEMDNK-GIRPDVFTYSSLI-SCLCNYGRWSDASRLLS 299

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNV 564
           +M    ++PN +++  LIDA    G +
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKL 326


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/378 (20%), Positives = 162/378 (42%), Gaps = 37/378 (9%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           +++   +  F K  ++ SA R +D  +K   SP+ +I  T + +CG+C  G  M++  ++
Sbjct: 259 VIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPD-FITYTAV-ICGLCQTGRVMEADKLF 316

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
            ++  + +  +   + +L++       +K    ++  M ++G+  ++ +Y  L    C  
Sbjct: 317 HEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKC 376

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A E+  E+     +  L+L+++TY+++V     A     A+K+ +DM  AG  P+
Sbjct: 377 GEVDTANELLHEM----CRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPD 432

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +T+++L++A   +  + +A  L  +ML    +P     N+L+     +   +   +L +
Sbjct: 433 AVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLK 492

Query: 458 SWTLSK-------------TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
            W L K              Q  +  +    T+    M  K      NT N +   H  +
Sbjct: 493 -WMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKA 551

Query: 505 FDKRFS-----------FKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISW 551
            + + +           F  T ++YN L+K       +   + L  +MR  GL  +   +
Sbjct: 552 RNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIY 611

Query: 552 TILIDACGGSGNVEGALQ 569
            I  D     G +E  L+
Sbjct: 612 NIFADINYDEGKMELTLE 629



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 123/318 (38%), Gaps = 59/318 (18%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN Y    +I +    G   ++  +  ++ S+ +  +  ++ +L++      ++     +
Sbjct: 221 PNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRL 280

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV--KHLEAKGVLKLDVFTYSTI 369
           +  MQK  +  D  +Y  ++   C  G  + A +++ E+  K LE       D  TY+ +
Sbjct: 281 FDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEP------DEVTYTAL 334

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +      + A  +   ML  G+TPN +T+++L +     G V+ A  L  EM + G 
Sbjct: 335 IDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGL 394

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           E N    N L+    +A   D+A +L +   ++                           
Sbjct: 395 ELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVA--------------------------- 427

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
                                F P   TY  LM A C     V+A  L+ +M    L P 
Sbjct: 428 --------------------GFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPT 467

Query: 548 HISWTILIDACGGSGNVE 565
            +++ +L++    SG +E
Sbjct: 468 VVTFNVLMNGFCMSGMLE 485



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 97/234 (41%), Gaps = 28/234 (11%)

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           ++ ++ KG LK + +TY+ ++ +         A +V  +M+S G+ P+ + +++LI+   
Sbjct: 211 IEEMQIKG-LKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFC 269

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK------ 463
             G V  A  LF+EM +    P+      ++    +  +   A +LF      +      
Sbjct: 270 KLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEV 329

Query: 464 TQVALGEDY--DGNTDRISNMEHKDKQSITNTPNFVPNSHYS-------SFDK------- 507
           T  AL + Y  +G      ++ H     +  TPN V  +  +         D        
Sbjct: 330 TYTALIDGYCKEGKMKEAFSL-HNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHE 388

Query: 508 --RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
             R   +    TYN L+   C   +  +   LM +M   G  P+ +++T L+DA
Sbjct: 389 MCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDA 442


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 145/328 (44%), Gaps = 65/328 (19%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED--LRSQNVTLNIYVFNSLMN 299
           RA DA +  L+  +    R +  V G+ G   +  +I E+  LR       + VFN++M 
Sbjct: 172 RALDAFE-WLARSSAPASRAVAVVLGVLG-RARQDSIAEEVFLRFAGEGATVQVFNAMMG 229

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILL----KACCLAGNTVLAQEIYGEVKHL 353
           V A   +F    ++   M   G+  D+ S+N L+    K+ CLA    L  ++  EV+  
Sbjct: 230 VYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVAL--DLLFEVR-- 285

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
             +  L+ DV TY+T++   + +   + A+ V EDM+++   P+  T++++++     G 
Sbjct: 286 --QSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGK 343

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
            E+A  LF E+++ G  P++   N LL A  +                           +
Sbjct: 344 AEEAERLFRELVEKGFMPDAITYNSLLYAFAK---------------------------E 376

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN--ILMKACCTDYYR 531
           GN D++   EH  +Q +                 +  FK    TYN  I M         
Sbjct: 377 GNVDKV---EHTCEQLV-----------------KAGFKKNEITYNTMIHMYGKMGRLDL 416

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACG 559
              L +EMR +G +P+ +++T++ID+ G
Sbjct: 417 AVGLYDEMRAMGCTPDAVTYTVMIDSLG 444



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 133/298 (44%), Gaps = 16/298 (5%)

Query: 262  IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF-TLEVY-KNMQKLG 319
            ++D     GD  +   IY  +++     N++++ S++++  H  +F  +E+    M+  G
Sbjct: 856  LLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAG 915

Query: 320  VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
               D+A  N LL     AGN     ++Y  +  LEA   L+ D  TY+T++ ++  +   
Sbjct: 916  FKPDLAILNALLNMYTAAGNFDRTTQVYRSI--LEAG--LEPDEDTYNTLIVMYCRSFRP 971

Query: 380  QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
            +    +  +M   G+TP   ++ SL+ A A A L EQA  +FEEM     + N    +++
Sbjct: 972  EEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMM 1031

Query: 440  LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
            ++    A    +A  L         +  +   +   T   +  + ++ +++ N      N
Sbjct: 1032 MKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLN------N 1085

Query: 500  SHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
               SS +   S  P +T ++  +K    DY      + EM+  G+ P+H  WT  I A
Sbjct: 1086 LKSSSLE--VSTLPYSTVFDAYLKN--GDYNHGTTKLLEMKRDGVEPDHQVWTCFIRA 1139



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 91/209 (43%), Gaps = 12/209 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----NAHDLKFT 308
           P+++    ++ V G CG   ++  ++ +L  +    +   +NSL+       N   ++ T
Sbjct: 326 PDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHT 385

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            E    + K G   +  +YN ++      G   LA  +Y E++ +        D  TY+ 
Sbjct: 386 CE---QLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTP----DAVTYTV 438

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++           A KV EDM  AG+ P  I +S+LI A A  G    A + F+ M+ +G
Sbjct: 439 MIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASG 498

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +P+     ++L     +   ++   L+R
Sbjct: 499 VKPDRLAYLVMLDVFARSGDTEKMLCLYR 527



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 129/316 (40%), Gaps = 26/316 (8%)

Query: 255  NMYICRTII-DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
            N+  CR II +  G    + ++  + + LR Q   ++  ++N+L++  A    +     V
Sbjct: 744  NILSCRVIIIEAYGKIKLWQQAEILVKGLR-QASGIDRRIWNALIHAYAESGLYEKARAV 802

Query: 312  YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + NM K G +  + S N +++A  + G      E+Y  V+ L+     K+   T   ++ 
Sbjct: 803  FDNMIKTGPLPTVDSVNGMMRALIVDGRL---DELYVVVEELQDMN-FKISKSTVLLLLD 858

Query: 372  VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
             FA A      +K+   M +AG  PN   + S+I+   +         +  EM  AG +P
Sbjct: 859  AFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKP 918

Query: 432  NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
            +    N LL     A  FDR  +++RS      +  L  D D     I          + 
Sbjct: 919  DLAILNALLNMYTAAGNFDRTTQVYRSI----LEAGLEPDEDTYNTLI----------VM 964

Query: 492  NTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
               +F P   ++  ++  +    P   +Y  L+ A      R +A  +  EMR+     N
Sbjct: 965  YCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLN 1024

Query: 548  HISWTILIDACGGSGN 563
               + +++     +GN
Sbjct: 1025 RSIYHMMMKIYRNAGN 1040



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 121/301 (40%), Gaps = 39/301 (12%)

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            QN  L  Y+   L  + A       +V+ +MQ +G+ A  + Y  ++   C  G    A
Sbjct: 672 GQNCNLYEYLITCL--IEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETA 729

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYST-IVKVFADAKWWQMA-LKVKEDMLSAGVTPNTITW 401
             +  +      +  + L++ +    I++ +   K WQ A + VK    ++G+  +   W
Sbjct: 730 HRLMDDA----LQSGIPLNILSCRVIIIEAYGKIKLWQQAEILVKGLRQASGI--DRRIW 783

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR---- 457
           ++LI+A A +GL E+A  +F+ M++ G  P     N +++A +   + D  + +      
Sbjct: 784 NALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQD 843

Query: 458 -SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH-YSSF------DKRF 509
            ++ +SK+ V L  D       +   E     +      ++PN H Y S         RF
Sbjct: 844 MNFKISKSTVLLLLDAFAKAGDV--FEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRF 901

Query: 510 -------------SFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTIL 554
                         FKP     N L  M     ++ R   +   +   GL P+  ++  L
Sbjct: 902 RDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTL 961

Query: 555 I 555
           I
Sbjct: 962 I 962


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 111/216 (51%), Gaps = 10/216 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL---- 309
           P++     +ID+    G+  ++R I + +    V  ++  +N+LMN   + L+  +    
Sbjct: 299 PDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMN--GYCLRMEVVEAR 356

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V++ M   G M D+ S++IL+   C A     A++++ E+ H   +G++  D  +Y+T+
Sbjct: 357 KVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTH---RGLIP-DTVSYNTL 412

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +     A+    A ++ +DM S G  PN +T+S L++  +  G ++QAM LF  M  +G 
Sbjct: 413 ISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGL 472

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           +P+    NI++    +  +F  A  LF   ++   Q
Sbjct: 473 KPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQ 508



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 92/189 (48%), Gaps = 6/189 (3%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           + +++R ++E + S+    +++ F+ L+N    A  +    +++  M   G++ D  SYN
Sbjct: 351 EVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYN 410

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            L+   C A   + A+E++   K + + G    ++ TYS ++   +   +   A+ +   
Sbjct: 411 TLISGLCQARRPLEAEELF---KDMHSNG-YPPNLVTYSILLDCLSKQGYLDQAMGLFRA 466

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M ++G+ P+ +T++ +I+     G  + A  LF E+   G +PN+  C   +    +   
Sbjct: 467 MENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGL 526

Query: 449 FDRAFRLFR 457
            D A + FR
Sbjct: 527 LDEAHKAFR 535



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/371 (21%), Positives = 146/371 (39%), Gaps = 38/371 (10%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           I F   +  F  +  +  A+  +D        PN++    II   G+C  G   +   + 
Sbjct: 162 ITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIK--GLCRVGKTTEVIKLL 219

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E ++      ++ ++N++++    D  +   + ++  M+  G++  + +Y  L+      
Sbjct: 220 EHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHG---L 276

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            N    +E +G +  ++   ++  D+  +S ++ +         A  + + M   GV P+
Sbjct: 277 RNLGRWKEAFGLLNEMKGGNIMP-DLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPD 335

Query: 398 TITWSSLINA-CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             T+++L+N  C    +VE A  +FE M+  G  P+    +IL+    +A + D A +LF
Sbjct: 336 VATYNTLMNGYCLRMEVVE-ARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLF 394

Query: 457 RSWT---LSKTQVALGEDYDGNTDRISNME----HKDKQSITNTPNFVPN-------SHY 502
              T   L    V+      G       +E     KD  S    PN V         S  
Sbjct: 395 DEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQ 454

Query: 503 SSFDKRF---------SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISW 551
              D+             KP   TYNI++   C    +   + L  E+   GL PN+   
Sbjct: 455 GYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVC 514

Query: 552 TILIDA-CGGS 561
           T  ID  C G 
Sbjct: 515 TPTIDGVCKGG 525



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 15/219 (6%)

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K +E  G+   DV + + ++  F           V   ++  G+ PN IT+S+LIN    
Sbjct: 115 KQMEMAGI-SHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCI 173

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G + +A+ LF+ M+  G +PN    +I+++      +     +L     +   +  +  
Sbjct: 174 EGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDV-V 232

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTD 528
            Y+   DR+       K  + N        H     K     PT  TY  L+        
Sbjct: 233 IYNTIVDRLC------KDRLVNEA-----VHIFCKMKGTGILPTVVTYTSLIHGLRNLGR 281

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           +     L+NEM+   + P+ +++++LID     G V  A
Sbjct: 282 WKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEA 320



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 4/128 (3%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E++K+M   G   ++ +Y+ILL   CL+    L Q + G  + +E  G LK D+ TY+ +
Sbjct: 427 ELFKDMHSNGYPPNLVTYSILLD--CLSKQGYLDQAM-GLFRAMENSG-LKPDLVTYNIM 482

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +        ++ A ++  ++   G+ PN    +  I+     GL+++A   F +M +  C
Sbjct: 483 IDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDC 542

Query: 430 EPNSQCCN 437
            P   C N
Sbjct: 543 SPAQGCIN 550


>gi|384251959|gb|EIE25436.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 627

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 141/331 (42%), Gaps = 55/331 (16%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM--N 299
           R  DAS   L++ N  +    ++ C   G   ++  +   ++   +  ++  +N L+   
Sbjct: 156 RELDAS--GLATGNAALYAAGMNACIGLGYVDEAAGLLRTMQGWGMRADVRAYNILLKGQ 213

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
            NAH L        +M++L V   + +YNIL+ A     N  L ++   +++  +  G L
Sbjct: 214 ANAHSLSAMQATMADMERLQVAPSVVTYNILIDAFV---NEGLLEQAAAKLQEAQKLG-L 269

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           +LD+++Y+T++K F  A     A  V E M    V PN +T+++L++ C  AG +  A  
Sbjct: 270 RLDLWSYNTLIKGFCQANQVADARDVLEAMKLQNVQPNVVTYTTLVDGCVRAGDLFLAEE 329

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           +  +M   G  PN+   NI+L+     CQ          W+    Q AL       T R 
Sbjct: 330 MLRDMQFMGVPPNTVTFNIMLRGY---CQ----------WSTRPIQDAL------ETLRS 370

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMN 537
             M                              P+T T+N LM AC +  D   V  L  
Sbjct: 371 MGMA--------------------------GVVPSTDTFNTLMGACLSRGDPGAVPRLFR 404

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            + ++G +P+ +S+T LI +    G  E A+
Sbjct: 405 RLISLGHTPDALSYTSLITSLTRLGRPEDAV 435



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 118/247 (47%), Gaps = 13/247 (5%)

Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTIIDVCGICGDYMKSRA 277
           RAD+   N + +       +SA++A  A  + L  +P++     +ID     G   ++ A
Sbjct: 200 RADVRAYNILLKGQANAHSLSAMQATMADMERLQVAPSVVTYNILIDAFVNEGLLEQAAA 259

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
             ++ +   + L+++ +N+L+     A+ +    +V + M+   V  ++ +Y  L+  C 
Sbjct: 260 KLQEAQKLGLRLDLWSYNTLIKGFCQANQVADARDVLEAMKLQNVQPNVVTYTTLVDGCV 319

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW----WQMALKVKEDMLS 391
            AG+  LA+E+   ++ ++  GV   +  T++ +++ +   +W     Q AL+    M  
Sbjct: 320 RAGDLFLAEEM---LRDMQFMGVPP-NTVTFNIMLRGYC--QWSTRPIQDALETLRSMGM 373

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           AGV P+T T+++L+ AC + G       LF  ++  G  P++     L+ +     + + 
Sbjct: 374 AGVVPSTDTFNTLMGACLSRGDPGAVPRLFRRLISLGHTPDALSYTSLITSLTRLGRPED 433

Query: 452 AFRLFRS 458
           A   FR+
Sbjct: 434 AVLAFRA 440



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +R + E ++ QNV  N+  + +L++  V A DL    E+ ++MQ +GV  +  ++NI+L+
Sbjct: 292 ARDVLEAMKLQNVQPNVVTYTTLVDGCVRAGDLFLAEEMLRDMQFMGVPPNTVTFNIMLR 351

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C   +T   Q+    ++ +   GV+     T++T++             ++   ++S 
Sbjct: 352 GYC-QWSTRPIQDALETLRSMGMAGVVP-STDTFNTLMGACLSRGDPGAVPRLFRRLISL 409

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           G TP+ ++++SLI +    G  E A+  F  M
Sbjct: 410 GHTPDALSYTSLITSLTRLGRPEDAVLAFRAM 441



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 32/238 (13%)

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST----IVKVFADAKWWQMALKV 385
           LLK  C  G    A ++Y   +        +   + YST    I   F   + +  A++ 
Sbjct: 63  LLKGLCAKGAFRTAWKLYSSQQG-------RSKTYQYSTYQALITGAFQAGEAYD-AVQA 114

Query: 386 KEDMLSAGVTPNTITWSSLINAC-----ANAGLVEQAMHLFEEMLQAG-CEPNSQCCNIL 439
             D+ S+G+TPN ITWSS+I++        A     A  L+ E+  +G    N+      
Sbjct: 115 FRDLQSSGLTPNVITWSSVISSLCKQRRKGAPCAHLAYELWRELDASGLATGNAALYAAG 174

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
           + AC+     D A  L R      T    G   D     I      +  S++     + +
Sbjct: 175 MNACIGLGYVDEAAGLLR------TMQGWGMRADVRAYNILLKGQANAHSLSAMQATMAD 228

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILI 555
                  +R    P+  TYNIL+ A   +    +  A + E + +GL  +  S+  LI
Sbjct: 229 M------ERLQVAPSVVTYNILIDAFVNEGLLEQAAAKLQEAQKLGLRLDLWSYNTLI 280


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 144/335 (42%), Gaps = 43/335 (12%)

Query: 265 VCGICGDYMKSRAIYEDLR--SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL---G 319
           V G+CG  M ++A+ E +R  S   T  ++++N ++       +  ++ YK ++K+    
Sbjct: 61  VDGLCGAGMANQAL-ELVRELSGVYTPTVFIYNGIITGLCRASR-VMDAYKVLEKMVEES 118

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           ++ ++ +Y ILL   C +  T LA+E++ E+K    +   K +  TY T+++  + A   
Sbjct: 119 IVPNVFTYTILLNGLCRSNKTKLAREVFQEMK----RNGCKPNPITYGTLIQHLSRAGEI 174

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
             AL+V  +  S  +  + IT ++++     A  ++ A+   EEM Q G  PN    + L
Sbjct: 175 DEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNL 234

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD--KQSITN----- 492
           +    +  + DR  R F      K        Y G  D +    + D  ++S+       
Sbjct: 235 VHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSG 294

Query: 493 -TPNFVPNS-------HYSSFD---------KRFSFKPTTTTYNILMKACC-----TDYY 530
             P+ V  S           FD         +R   KP   TY+ L+   C      D +
Sbjct: 295 VVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAF 354

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           R   L+  M   G  PN +++  ++D    SG ++
Sbjct: 355 R---LLELMEAAGSPPNVVTYNSVMDGLCKSGKMD 386



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 82/144 (56%), Gaps = 4/144 (2%)

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + +++ GV+ D+ +Y++L+     AG    + E+  +++    +  +K DV TYST++ V
Sbjct: 288 EELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMR----RNGVKPDVVTYSTLINV 343

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
               + +Q A ++ E M +AG  PN +T++S+++    +G +++   ++E ML++ C P+
Sbjct: 344 LCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPD 403

Query: 433 SQCCNILLQACVEACQFDRAFRLF 456
               +I++    +A   D A +LF
Sbjct: 404 VVTYSIIMNGLSKAGMLDSAVKLF 427



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 13/241 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAI-- 278
           I +   ++   +  ++  ALR     ++ L  P ++  C TI  V G+C       A+  
Sbjct: 159 ITYGTLIQHLSRAGEIDEALRVM-IEQRSLELPTDVITCTTI--VGGLCKASRLDDALKF 215

Query: 279 YEDLRSQNVTLNIYVFNSLMN-VNAH-DLKFTLEVYKNMQ-KLGVMADMASYNILLKACC 335
            E++R   V  N   +++L++    H +L   +  ++  + + G   + A+Y   L A C
Sbjct: 216 MEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALC 275

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            AG    A++    V+ L   GV+  DV TYS ++  FA A  +  +L++ EDM   GV 
Sbjct: 276 KAGYLDRARK---SVEELRQSGVVP-DVVTYSMLINTFARAGQFDASLELLEDMRRNGVK 331

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +T+S+LIN        + A  L E M  AG  PN    N ++    ++ + D   R+
Sbjct: 332 PDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRV 391

Query: 456 F 456
           +
Sbjct: 392 Y 392



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 114/278 (41%), Gaps = 33/278 (11%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           GV+    +Y +++   C AG    A E+  E+      GV    VF Y+ I+     A  
Sbjct: 49  GVVYGETTYKLVVDGLCGAGMANQALELVRELS-----GVYTPTVFIYNGIITGLCRASR 103

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A KV E M+   + PN  T++ L+N    +   + A  +F+EM + GC+PN      
Sbjct: 104 VMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGT 163

Query: 439 LLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEH-----KDKQSI 490
           L+Q    A + D A R+    RS  L  T V       G   + S ++      ++ + +
Sbjct: 164 LIQHLSRAGEIDEALRVMIEQRSLELP-TDVITCTTIVGGLCKASRLDDALKFMEEMRQM 222

Query: 491 TNTPNFVPNS-------HYSSFDKRFSF----------KPTTTTYNILMKACCTDYY--R 531
              PN V  S        +   D+   F                Y   + A C   Y  R
Sbjct: 223 GVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDR 282

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +  + E+R  G+ P+ +++++LI+    +G  + +L+
Sbjct: 283 ARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLE 320



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 119/245 (48%), Gaps = 7/245 (2%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASK-KHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           ++ + N V  F +  +L   +R ++  K +   S         +D     G   ++R   
Sbjct: 228 EVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSV 287

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E+LR   V  ++  ++ L+N  A   +F  +LE+ ++M++ GV  D+ +Y+ L+   C  
Sbjct: 288 EELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKE 347

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
                 Q+ +  ++ +EA G    +V TY++++     +       +V E ML +  +P+
Sbjct: 348 RKF---QDAFRLLELMEAAGSPP-NVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPD 403

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +T+S ++N  + AG+++ A+ LFE +  +   P++   ++++ +   A + + A  ++ 
Sbjct: 404 VVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYH 463

Query: 458 SWTLS 462
              ++
Sbjct: 464 GMEVT 468


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 155/350 (44%), Gaps = 42/350 (12%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
           SP+     T+++     G   ++RA+   ++   +      +N+L++  A    +K   +
Sbjct: 240 SPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATK 299

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V ++M   G   D+ +YN+L    C AG    A  +  E++ L        DV TY+T+V
Sbjct: 300 VVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALP---DVVTYNTLV 356

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 +    AL++ E+M   GV P  +T + ++ +    G +E+A+   E++ + G  
Sbjct: 357 DACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLA 416

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT--DRISNM----EH 484
           P+    N L+ A  +A    +AF      TL    V  G   D  T    + N+     +
Sbjct: 417 PDVITYNTLIDAYCKAGNVAKAF------TLMDEMVGKGLKMDTFTLNTVLYNLCKMKRY 470

Query: 485 KDKQSITNTP---NFVPN---------SHYSSFDKRFSFK-----------PTTTTYNIL 521
           +D + + ++P    FVP+         +++  ++   + +           P+ +TYN L
Sbjct: 471 EDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTL 530

Query: 522 MKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +K  C      +A+  +NE+   GL P+  ++ I+I A    G++E A +
Sbjct: 531 IKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFR 580



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/345 (19%), Positives = 139/345 (40%), Gaps = 57/345 (16%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           V+   K+  L  AL   +   +   +P++    T+ID     G+  K+  + +++  + +
Sbjct: 391 VKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGL 450

Query: 288 TLNIYVFNSLMNVNAHDLKF---TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
            ++ +  N+++  N   +K      E+  +  + G + D  SY  ++ A     N   A 
Sbjct: 451 KMDTFTLNTVL-YNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPAL 509

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
            ++ ++  +E K  L   + TY+T++K     +  + A+    +++  G+ P+  T++ +
Sbjct: 510 RLWDQM--IERK--LIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNII 565

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
           I+A    G +E A     +M++   +P+   CN L+       + D+A +LF SW     
Sbjct: 566 IHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESW----- 620

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
            V  G+  D                                           TYN L+++
Sbjct: 621 -VEKGKKVD-----------------------------------------VITYNTLIQS 638

Query: 525 CCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            C   D        ++M   GL P+  ++ +++ A   +G  E A
Sbjct: 639 MCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEA 683



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 88/182 (48%), Gaps = 6/182 (3%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++ +  + +  +I  +N+L+        LK  ++    + + G++ D  +YNI++ A C
Sbjct: 511 LWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYC 570

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+   A   + ++     +   K DV T +T++           ALK+ E  +  G  
Sbjct: 571 KEGDLENAFRFHNKM----VENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKK 626

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            + IT+++LI +    G V+ A+H F++M   G +P++   N++L A  EA + + A  +
Sbjct: 627 VDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNM 686

Query: 456 FR 457
             
Sbjct: 687 LH 688



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  + K+ DL +A R ++   ++   P++  C T+++   + G   K+  ++E    + 
Sbjct: 565 IIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKG 624

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
             +++  +N+L+       D+   L  + +M+  G+  D  +YN++L A   AG +   +
Sbjct: 625 KKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRS---E 681

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI-TWSS 403
           E +  +  L   G L    F    +    AD    +      E   S     N + T+  
Sbjct: 682 EAHNMLHKLADSGKLS-QSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYME 740

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            +N     G +++A  + +EM+Q G   +S     L++  ++
Sbjct: 741 RLNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIK 782


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 112/281 (39%), Gaps = 55/281 (19%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           V   LM +     K     Y+ + + G  A +  +NIL+   C  G+  +AQ ++  +  
Sbjct: 107 VLEHLMKLKY--FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI-- 162

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
              K  L+  V +Y+T++  +          ++K  ML++GV P+  T+S LIN      
Sbjct: 163 --TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 220

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            ++ A  LF+EML  G  PN      L+    +  + D A  ++                
Sbjct: 221 KMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY---------------- 264

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYY 530
                         KQ ++                  S  P   TYN L+   C   D  
Sbjct: 265 --------------KQMLSQ-----------------SLSPDLITYNTLIYGLCKKGDLK 293

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           +   L++EM   GL P+ I++T LID C   G+++ A + R
Sbjct: 294 QAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHR 334



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 146/357 (40%), Gaps = 33/357 (9%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DJ +F   +  + +   L  A+  Y  +++H        CR +++       +     
Sbjct: 63  RSDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YE++       ++Y FN LM+      D++    V+  + K G+   + SYN L+    
Sbjct: 123 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 182

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 183 RLGDL---DEGFRLKSAMLASGV-QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 238

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++LI+     G V+ AM ++++ML     P+    N L+    +     +A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 298

Query: 456 FRSWT---LSKTQVALGEDYDG---NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
               +   L   ++      DG     D  S  EH+ +    N                 
Sbjct: 299 IDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQEN----------------- 341

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
             +     Y  L    C +   V A  ++ EM +VGL P+  ++T++I+     G+V
Sbjct: 342 -IRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 397



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 10/183 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +  IY+ + SQ+++ ++  +N+L+       DLK   
Sbjct: 239 PNGVTFTTLID--GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 296

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +   M   G+  D  +Y  L+  CC  G+   A E     K +  + + +LD   Y+ +
Sbjct: 297 HLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFE---HRKRMIQENI-RLDEVAYTAL 352

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
                       A K+  +MLS G+ P+  T++ +IN     G V +   L +EM + G 
Sbjct: 353 XSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 412

Query: 430 EPN 432
            P+
Sbjct: 413 VPS 415


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   ++ F +   + +A++ ++  +    +PN  +  T+ID     G+      +Y+D+R
Sbjct: 258 YGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMR 317

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            + V  ++  +N+L+N    A +LK    + + M+  G+  D  +Y  L+  CC  G   
Sbjct: 318 VRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLD 377

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
           +A +I    K   A+  + LD  TY+ ++   + A     A +V  +M+ A + P+  T+
Sbjct: 378 MAMDI----KQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTY 433

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           + +I+A    G V+    L +EM   G +P     N+++    +  Q   A  L  + 
Sbjct: 434 TMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAM 491



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 134/350 (38%), Gaps = 71/350 (20%)

Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           Y  L    +     +FN LM   V   +L    +V+  M++  V   + ++N L+   C 
Sbjct: 174 YLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRR-SVQPTVVTFNTLISGMCR 232

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           A +      +Y E+  +   GV K DV+TY  ++K F      + A+K+  +M   GV P
Sbjct: 233 ARDLDAVDGLYKEMSDV---GV-KPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNP 288

Query: 397 NTITWSSLINACANAGLVEQAMHLF----------------------------------- 421
           N + +++LI+A    G V   M L+                                   
Sbjct: 289 NAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIV 348

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE-DYDG------ 474
           EEM  AG +P+      L+  C +  + D A  +     +++ +V+L E  Y        
Sbjct: 349 EEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDI--KQKMAEKEVSLDEVTYTALISGLS 406

Query: 475 ------NTDRI-SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK-----------PTTT 516
                 + +R+   M     +    T   V ++     D +  FK           P   
Sbjct: 407 KAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVV 466

Query: 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           TYN++M   C          L++ M  +G+SP+ I++ IL+D     G V
Sbjct: 467 TYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKV 516



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/262 (18%), Positives = 99/262 (37%), Gaps = 54/262 (20%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y  +   G+  +   +N+L++     G  V A++++ E++       ++  V T++T++ 
Sbjct: 174 YLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRR-----SVQPTVVTFNTLIS 228

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               A+       + ++M   GV P+  T+ +LI      G +E A+ +F EM   G  P
Sbjct: 229 GMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNP 288

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           N+     L+ A  +    +    L++   +                              
Sbjct: 289 NAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVM-------------------------- 322

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549
                                P    YN L+   C   +    ++++ EM+  GL P+ +
Sbjct: 323 ---------------------PDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKV 361

Query: 550 SWTILIDACGGSGNVEGALQCR 571
           ++T LID C   G ++ A+  +
Sbjct: 362 TYTTLIDGCCKDGKLDMAMDIK 383



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 21/159 (13%)

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW--TLSKTQVALGEDYD 473
           +A   + ++L AG  P ++  N+L++  V   +   A ++F     ++  T V       
Sbjct: 169 EAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRSVQPTVVTF----- 223

Query: 474 GNTDRISNM-EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRV 532
            NT  IS M   +D  ++        +  Y         KP   TY  L+K  C      
Sbjct: 224 -NT-LISGMCRARDLDAV--------DGLYKEMSD-VGVKPDVYTYGALIKGFCRTGRME 272

Query: 533 KA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            A  + NEMR  G++PN + +T LIDA    GNV   + 
Sbjct: 273 NAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMD 311



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 131/304 (43%), Gaps = 21/304 (6%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           R   +D V G+ K+++++GV P     G+   L+K  C+    +G +E  V +   + + 
Sbjct: 232 RARDLDAVDGLYKEMSDVGVKPDVYTYGA---LIKGFCR----TGRMENAVKMFNEMRDT 284

Query: 185 RLPVKELDEEFRIVQLC----VNKP-DVNLAIRYACIVPRADILFCN-FVREFGKKRDLV 238
            +    +     I   C    VN   D+   +R   ++P  D++  N  V    + R+L 
Sbjct: 285 GVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMP--DLVAYNALVNGLCRARNLK 342

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           +A    +  K     P+     T+ID C   G    +  I + +  + V+L+   + +L+
Sbjct: 343 AAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALI 402

Query: 299 N--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           +    A        V + M +  +  D  +Y +++ A C  G+     ++   +K ++ K
Sbjct: 403 SGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKL---LKEMQNK 459

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  K  V TY+ I+         + A  +   ML+ GV+P+ IT++ L++     G V  
Sbjct: 460 GK-KPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVAN 518

Query: 417 AMHL 420
           +  L
Sbjct: 519 SEEL 522


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 116/539 (21%), Positives = 215/539 (39%), Gaps = 132/539 (24%)

Query: 71   NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRID 130
            N  Y  + S L ++G+++E   ++E +  S        ++++   V   + K+   G ++
Sbjct: 563  NGTYNTLLSGLGREGKVKEVMHLLEEMTHS----IHPPNLITYNTVLDCLSKN---GEVN 615

Query: 131  CVVGVLKKLNELGVAP-LELFDGSGFKLLKNE---------CQ--RLLDSGEVEM----- 173
            C +G+L  + E G  P L  ++   + L+K E         CQ  ++L      +     
Sbjct: 616  CAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMKKILAPDYATLCTILP 675

Query: 174  -FV--GLM-EVLEEFRLPVKELD-----EEFR-IVQLCVNKPDVNLAIRYACIVPRADIL 223
             FV  GLM E L   +  + + D       F  +++  +NK  V  +I +A  +    IL
Sbjct: 676  SFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSIEFAENIASRGIL 735

Query: 224  FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
              +F                             ++C  I  +C      +++  ++   +
Sbjct: 736  LNDF-----------------------------FLCPLIRHLCK-HKKALEAHQLFNKFK 765

Query: 284  SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
               V+L    +NSL+   V+ + +    +++  M++LG   D  +YN++L A    G ++
Sbjct: 766  GLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDA---MGKSM 822

Query: 342  LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
              +E+      +  KG     V TY+TI+     +K  + A+ +  +++S G +P   T+
Sbjct: 823  RIEEMLRVQAEMHRKGYESTYV-TYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTY 881

Query: 402  SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
              L++    AG +  A +LF EML+ GC+PN    NILL                     
Sbjct: 882  GPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLN-------------------- 921

Query: 462  SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
                   G    GNT+ +  +  K  +   N                    P   +Y +L
Sbjct: 922  -------GHRIAGNTENVCQIFEKMVEQGIN--------------------PDIKSYTVL 954

Query: 522  MKACCT--------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
            +   CT         Y+R      ++  +GL P+ I + +LID  G S  +E A+ C F
Sbjct: 955  IDTLCTAGRLNDGLSYFR------QLLELGLEPDLIIYNLLIDGLGKSERIEEAV-CLF 1006



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 139/316 (43%), Gaps = 41/316 (12%)

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++ ++ V  N+Y +   + V     +F    ++   M+  G   D+ ++ ++++  C AG
Sbjct: 238 EMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAG 297

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A++++ ++K  + K     D  TY T++    D+   Q  +++   M++ G   N 
Sbjct: 298 RLSDAKDVFWKMKASDQKP----DRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNI 353

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           ++++++++A    G +++A+ +F+EM + G  P     N L+   ++A  FDRA  LF  
Sbjct: 354 VSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNH 413

Query: 459 WTL------SKTQVALGEDYDGNTDR----ISNMEHKDKQSITNTPNF-VPNSHYSSFD- 506
                      T V L  +Y G + +    I   EH   + I   P+    N+  SS   
Sbjct: 414 MNACGPSPNGYTHV-LFINYYGKSGQSLKAIQRYEHMKSKGI--VPDVAAANAVLSSLAR 470

Query: 507 --------------KRFSFKPTTTTYNILMKACCTDYYRVKALMN---EMRTVGLSPNHI 549
                         K     P T TY +++K CC+   +    MN   +M   G  P+ +
Sbjct: 471 SGRLGMAKRVFYELKDMGVSPDTITYTMMIK-CCSKASKADEAMNFFSDMVETGCVPDVL 529

Query: 550 SWTILIDAC--GGSGN 563
           +   LID    GG GN
Sbjct: 530 ALNSLIDTLYKGGKGN 545



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/351 (19%), Positives = 148/351 (42%), Gaps = 55/351 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   + + G   D  S +  ++A      + N+     ++D     G   ++ A++++
Sbjct: 319 VTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDE 378

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++ + ++   Y +NSL++  + A      LE++ +M   G   +  ++ + +     +G 
Sbjct: 379 MKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQ 438

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           ++ A + Y   +H+++KG++  DV   + ++   A +    MA +V  ++   GV+P+TI
Sbjct: 439 SLKAIQRY---EHMKSKGIVP-DVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTI 494

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++ +I  C+ A   ++AM+ F +M++ GC P+    N L+    +  + + A++LF   
Sbjct: 495 TYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQL 554

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                                          K    +PT  TYN
Sbjct: 555 -----------------------------------------------KEMKIEPTNGTYN 567

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            L+     +     V  L+ EM      PN I++  ++D    +G V  A+
Sbjct: 568 TLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAI 618



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 89/189 (47%), Gaps = 6/189 (3%)

Query: 270  GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASY 327
            G  + +  ++ ++       N  ++N L+N +  A + +   ++++ M + G+  D+ SY
Sbjct: 892  GKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSY 951

Query: 328  NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             +L+   C AG        + ++  L     L+ D+  Y+ ++     ++  + A+ +  
Sbjct: 952  TVLIDTLCTAGRLNDGLSYFRQLLELG----LEPDLIIYNLLIDGLGKSERIEEAVCLFN 1007

Query: 388  DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            +M   G+ PN  T++SLI     AG   +A  ++EE+L  G +PN    N L++    + 
Sbjct: 1008 EMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSG 1067

Query: 448  QFDRAFRLF 456
              D A+  +
Sbjct: 1068 STDNAYAAY 1076



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 98/241 (40%), Gaps = 41/241 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--E 310
           SPN Y     I+  G  G  +K+   YE ++S+ +  ++   N++++  A   +  +   
Sbjct: 420 SPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKR 479

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+  ++ +GV  D  +Y +++K C  A     A   + ++  +E   V   DV   ++++
Sbjct: 480 VFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDM--VETGCVP--DVLALNSLI 535

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA--- 427
                      A K+   +    + P   T+++L++     G V++ MHL EEM  +   
Sbjct: 536 DTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHP 595

Query: 428 --------------------------------GCEPNSQCCNILLQACVEACQFDRAFRL 455
                                           GC P+    N ++   ++  +F+ AFR+
Sbjct: 596 PNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRM 655

Query: 456 F 456
           F
Sbjct: 656 F 656



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 112/255 (43%), Gaps = 36/255 (14%)

Query: 233  KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
            K   +V A   ++   ++   PN  I   +++   I G+      I+E +  Q +  +I 
Sbjct: 890  KAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIK 949

Query: 293  VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
             +  L++    A  L   L  ++ + +LG+  D+  YN+L+      G +   +E     
Sbjct: 950  SYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGL---GKSERIEEAVCLF 1006

Query: 351  KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI----- 405
              ++ KG++  +++TY++++     A     A ++ E++L  G  PN  T+++LI     
Sbjct: 1007 NEMKKKGIVP-NLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSV 1065

Query: 406  -----NACAN---------------AGLVEQ-----AMHLFEEMLQAGCEPNSQCCNILL 440
                 NA A                +GLV++     A  LF EM + GC P+    N++L
Sbjct: 1066 SGSTDNAYAAYDCVAVGVSLKTALISGLVDENLINIAEGLFAEMKRRGCGPDQFTYNLIL 1125

Query: 441  QACVEACQFDRAFRL 455
             A  ++ + +   ++
Sbjct: 1126 DAIGKSMRIEEMLKV 1140



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/263 (18%), Positives = 107/263 (40%), Gaps = 55/263 (20%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V+  MQK  V A++ ++  +     + G    A      ++    +  + L+ +TY+ +
Sbjct: 129 QVFDLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMR----EAGMSLNGYTYNGL 184

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +     + +   A++V + M+  G++P+  T+S L+ +      V+  + L  EM   G 
Sbjct: 185 IYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGV 244

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +PN     I ++   +A +FD A+++            LG+  D                
Sbjct: 245 KPNVYSYTICIRVLGQAARFDEAYQI------------LGKMEDSGC------------- 279

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRV---KALMNEMRTVGLSP 546
                                 KP   T+ ++++  C D  R+   K +  +M+     P
Sbjct: 280 ----------------------KPDVVTHTVVIQVLC-DAGRLSDAKDVFWKMKASDQKP 316

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
           + +++  L+D CG SG+ +  ++
Sbjct: 317 DRVTYITLLDKCGDSGDSQSVME 339


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 137/329 (41%), Gaps = 37/329 (11%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMN--VNAHDLKFTL 309
           +PN     T++      G+   +  +   +R + N   N+  FNS++N    A  ++   
Sbjct: 42  APNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGAR 101

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V+  M + G+  D+ SYN LL   C  G    +  ++ E+     +G++  DV T++++
Sbjct: 102 KVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQ---RGLVP-DVVTFTSL 157

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +     A   + A+ +   M   G+  N +T+++LI+     G ++ A+   EEM + G 
Sbjct: 158 IHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGI 217

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ--------VALGEDYDGNTDRISN 481
           +P+  C N L+    +  + D A  L R     + +        +  G    GN D    
Sbjct: 218 QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQ 277

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEM 539
           +  K  +                        P   TY+ L++  C +     A  L   M
Sbjct: 278 LNQKMLKK--------------------GVLPDAITYSSLIRGLCEEKRLNDACELFENM 317

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGAL 568
             +G+ P+  ++T LID     GNVE AL
Sbjct: 318 LQLGVQPDEFTYTTLIDGHCKEGNVEKAL 346



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 19/287 (6%)

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E++R   +  ++  +N+L+N       +    E+ + M+   V  D+ +Y+ ++   C  
Sbjct: 210 EEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKV 269

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           GN   A ++    + +  KGVL  D  TYS++++   + K    A ++ E+ML  GV P+
Sbjct: 270 GNLDSAFQLN---QKMLKKGVLP-DAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 325

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR-LF 456
             T+++LI+     G VE+A+ L +EM++ G  P+    ++L+    ++ +   A R LF
Sbjct: 326 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 385

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF------S 510
           + +   +  V     YD      S  E K   ++     F         DK +      +
Sbjct: 386 KLY--HEDPVPDNIKYDALMLCCSKAEFKSVVALLK--GFCMKGLMKEADKVYQSMLDRN 441

Query: 511 FKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
           +K   + Y+IL+   C      KAL    +M   G SPN  S   L+
Sbjct: 442 WKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLV 488



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 129/295 (43%), Gaps = 31/295 (10%)

Query: 285 QNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
             V  N+Y +N L+        L+  + V  +M+  G   +  +YN L+ A C AG    
Sbjct: 4   HGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDG 63

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A+ +   V  +  +G  K ++ T++++V     A   + A KV ++M+  G+ P+ ++++
Sbjct: 64  AERV---VSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL---FRSW 459
           +L++     G + +++ +F EM Q G  P+      L+ A  +A   ++A  L    R  
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD-KRFSFKPTTTTY 518
            L   +V      DG   +                 F+ ++  +  + ++   +P+   Y
Sbjct: 181 GLRMNEVTFTALIDGFCKK----------------GFLDDALLAVEEMRKCGIQPSVVCY 224

Query: 519 NILMKACCT----DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           N L+   C     D  R   L+ EM    + P+ ++++ +I      GN++ A Q
Sbjct: 225 NALINGYCKLGRMDLAR--ELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQ 277



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 19/246 (7%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M + GV  ++ +YNIL++A C  G     +E  G V  +   G    +  TY+T+V  F 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRL---EEAVGVVGDMRGAGCAP-NAVTYNTLVAAFC 56

Query: 375 DAKWWQMALKVKEDMLSAG-VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
            A     A +V   M   G   PN +T++S++N    AG +E A  +F+EM++ G  P+ 
Sbjct: 57  RAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV 116

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
              N LL    +      +  +F       TQ  L  D    T  I         +    
Sbjct: 117 VSYNTLLSGYCKVGCLHESLAVFSEM----TQRGLVPDVVTFTSLI--------HATCKA 164

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISW 551
            N        +  +    +    T+  L+   C   +   AL+   EMR  G+ P+ + +
Sbjct: 165 GNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCY 224

Query: 552 TILIDA 557
             LI+ 
Sbjct: 225 NALING 230



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 23/187 (12%)

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M+  GV PN  T++ L+ A    G +E+A+ +  +M  AGC PN+   N L+ A   A +
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 449 FDRAFR---LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
            D A R   L R    +K  +           +   ME   K                 F
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARK----------------VF 104

Query: 506 DK--RFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561
           D+  R    P   +YN L+   C     +   A+ +EM   GL P+ +++T LI A   +
Sbjct: 105 DEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKA 164

Query: 562 GNVEGAL 568
           GN+E A+
Sbjct: 165 GNLEQAV 171



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 112/257 (43%), Gaps = 36/257 (14%)

Query: 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247
           V  LD  F++ Q  + K           ++P A I + + +R   +++ L  A   ++  
Sbjct: 269 VGNLDSAFQLNQKMLKKG----------VLPDA-ITYSSLIRGLCEEKRLNDACELFENM 317

Query: 248 KKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN------ 299
            +    P+ +   T+ID  G C  G+  K+ ++++++  + V  ++  ++ L+N      
Sbjct: 318 LQLGVQPDEFTYTTLID--GHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSA 375

Query: 300 --VNAHDLKFTL----EVYKNMQKLGVM-----ADMASYNILLKACCLAGNTVLAQEIYG 348
               AH L F L     V  N++   +M     A+  S   LLK  C+ G    A ++Y 
Sbjct: 376 RTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQ 435

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            +         KLD   YS ++         + AL   + ML +G +PN+ +  SL+   
Sbjct: 436 SMLDRN----WKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGL 491

Query: 409 ANAGLVEQAMHLFEEML 425
              G+V +A +  +++L
Sbjct: 492 FEEGMVVEADNAIQDLL 508


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 139/356 (39%), Gaps = 55/356 (15%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P    LF N +    K +   + +  +   + +  +P++     +I+          + +
Sbjct: 58  PPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFS 117

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++ ++  +    N    N+L+       ++K  L  +  +   G   D  SY  L+   C
Sbjct: 118 VFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLC 177

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            AG T   + +   ++ LE   V K D+  Y+TI+      K    A  +  +M+  G++
Sbjct: 178 KAGET---KAVARLLRKLEGHSV-KPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGIS 233

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN  T+++LI+     G +++A  L  EM      P+    NIL+ A  +  + D A  L
Sbjct: 234 PNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSL 293

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           F                         M+HK         N  PN                
Sbjct: 294 FEE-----------------------MKHK---------NMFPN---------------I 306

Query: 516 TTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            TY  L+   C +++  R  AL  +M+  G+ PN  S+TIL+DA    G +E A Q
Sbjct: 307 VTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQ 362



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 6/178 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++Y    +ID     G   ++ +++E+++ +N+  NI  + SL++     H L+  + 
Sbjct: 268 NPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIA 327

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + K M++ G+  ++ SY ILL A C  G    A++ +   +HL  KG   L+V TY+ ++
Sbjct: 328 LCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFF---QHLLVKGY-HLNVRTYNVMI 383

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
                A  +   + +K  M   G  PN IT+ ++I A       ++A     EM+  G
Sbjct: 384 NGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKDENDKAEKFLREMIARG 441



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           SPN++   T+I    I G+  ++ ++  +++ +N+  ++Y FN L++  A + K    + 
Sbjct: 233 SPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMS 292

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +++ M+   +  ++ +Y  L+   C   N  L + I    K ++ +G+ + +V++Y+ ++
Sbjct: 293 LFEEMKHKNMFPNIVTYTSLIDGLC--KNHHLERAI-ALCKKMKEQGI-QPNVYSYTILL 348

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                    + A +  + +L  G   N  T++ +IN    AGL    M L  +M   GC 
Sbjct: 349 DALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCM 408

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSW 459
           PN+     ++ A +E  + D+A +  R  
Sbjct: 409 PNAITFKTIICALLEKDENDKAEKFLREM 437



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 104/222 (46%), Gaps = 13/222 (5%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTL 289
           G+ + +   LR  +    H   P++ +  TII    +C + +   A  +Y ++  + ++ 
Sbjct: 180 GETKAVARLLRKLEG---HSVKPDLVMYTTIIHC--LCKNKLLGDACDLYSEMIVKGISP 234

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N++ + +L++      +LK    +   M+   +  D+ ++NIL+ A    G    A  ++
Sbjct: 235 NVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLF 294

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            E+KH   K +   ++ TY++++         + A+ + + M   G+ PN  +++ L++A
Sbjct: 295 EEMKH---KNMFP-NIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDA 350

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
               G +E A   F+ +L  G   N +  N+++    +A  F
Sbjct: 351 LCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLF 392



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 75/148 (50%), Gaps = 4/148 (2%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++Y  M   G+  ++ +Y  L+   C+ GN    +E +  +  ++ K +   DV+T++ +
Sbjct: 222 DLYSEMIVKGISPNVFTYTTLIHGFCIMGNL---KEAFSLLNEMKLKNI-NPDVYTFNIL 277

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +   A       A+ + E+M    + PN +T++SLI+       +E+A+ L ++M + G 
Sbjct: 278 IDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGI 337

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFR 457
           +PN     ILL A  +  + + A + F+
Sbjct: 338 QPNVYSYTILLDALCKGGRLENAKQFFQ 365


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 133/310 (42%), Gaps = 54/310 (17%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLN 290
           ++ D + A R +D   +    P + I   +I   G+CG+   S A  ++  +R+  +  N
Sbjct: 205 RQGDFLKAFRLFDEMIEKKIFPTVVIYTILIR--GLCGESRISEAESMFRTMRNSGMLPN 262

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA-------------------------- 322
           +Y +N++M+       +K  LE+Y+ M   G++                           
Sbjct: 263 LYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLI 322

Query: 323 DMAS---------YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
           DMAS         YN L+   C AGN   A  ++ E++  E    +  DVFTYS ++K  
Sbjct: 323 DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE----ILPDVFTYSILIKGL 378

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
                 + A  + ++M   G  PN +T+++LI+     G +E+A+ +  +M + G EPN 
Sbjct: 379 CGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNI 438

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTL--------SKTQVALGEDYDGNTDRISNMEHK 485
              + L+    +A + + A  L+    +        + T +  G   DGNT     + HK
Sbjct: 439 ITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRL-HK 497

Query: 486 DKQSITNTPN 495
           + Q     PN
Sbjct: 498 EMQEAGLHPN 507



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 112/250 (44%), Gaps = 45/250 (18%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN+     +ID  G+C   + + +R    D+ S  V  NI+V+N L++    A +L   L
Sbjct: 296 PNVVTFGILID--GLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEAL 353

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            ++  ++K  ++ D+ +Y+IL+K  C        +E  G ++ ++ KG L  +  TY+T+
Sbjct: 354 SLHSEIEKHEILPDVFTYSILIKGLCGVDRM---EEADGLLQEMKKKGFLP-NAVTYNTL 409

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML---- 425
           +  +      + A++V   M   G+ PN IT+S+LI+    AG +E AM L+ EM+    
Sbjct: 410 IDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGL 469

Query: 426 -------------------------------QAGCEPNSQCCNILLQACVEACQFDRAFR 454
                                          +AG  PN    + L+    +  +   A +
Sbjct: 470 LPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIK 529

Query: 455 LFRSWTLSKT 464
           LF + T + T
Sbjct: 530 LFLAKTGTDT 539



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 121/320 (37%), Gaps = 55/320 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P M  C  ++D     G +     +Y D+ ++  + N+  + +L++      D      +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M +  +   +  Y IL++  C       A+ ++   + +   G+L  +++TY+T++ 
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMF---RTMRNSGMLP-NLYTYNTMMD 271

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +      + AL++ ++ML  G+ PN +T+  LI+       +  A     +M   G  P
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           N    N L+    +A     A  L                                    
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSL------------------------------------ 355

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHI 549
                     +S  +K     P   TY+IL+K  C          L+ EM+  G  PN +
Sbjct: 356 ----------HSEIEKH-EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAV 404

Query: 550 SWTILIDACGGSGNVEGALQ 569
           ++  LID     GN+E A++
Sbjct: 405 TYNTLIDGYCKEGNMEKAIE 424



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 84/176 (47%), Gaps = 22/176 (12%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-----TLNIYVFNSLMNVNAHDLKFT 308
           P +++  ++I +    G+   +  +++++ S+N+      ++ YV N   N         
Sbjct: 664 PIIFLQTSLISMYSATGNVADAHNMFDEIPSKNLISWTSVISAYVDNQRPNK-------A 716

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L++++ MQ   V  D+ +  + L AC   G   + + I+  ++H   +G L  D+   ++
Sbjct: 717 LQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRH---RG-LDTDLCLNNS 772

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           ++ +++       A +       + V PN +T+  ++ AC++AGLVE+    F  M
Sbjct: 773 LINMYSKCGEIGTARRF------SLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSM 822


>gi|414888270|tpg|DAA64284.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 890

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 153/357 (42%), Gaps = 41/357 (11%)

Query: 224 FCNFVREFGKKRDLVSALRAYD-ASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYE 280
           F    REF ++ D   +LR +    ++    P+ +I   +I V G  G  +  K   ++ 
Sbjct: 128 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFH 187

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDL--KFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           DL +++ T   Y   SL+   A +   +    +   M+  GV    A+YN +L AC  A 
Sbjct: 188 DLPAESRTALSY--TSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARAT 245

Query: 339 NTVLAQE----IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           +  +  +    ++ E++H +A   ++ D+ TY+T++   A       +  +   ML AGV
Sbjct: 246 DPPVPFDMLLGLFAEMRH-DASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGV 304

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           +P+T+++  +++A A+AG + +A  LF EM   G   ++     L++A         A  
Sbjct: 305 SPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVA 364

Query: 455 LFRSW-------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
           + R         T +  +V L  D  G   R   +    ++  T  P             
Sbjct: 365 VLRQMQADGCAPTAATYRVLL--DLYGRQGRFDGVRQLFREMRTAVP------------- 409

Query: 508 RFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
                P T TYN+L +       +  V  L ++M   G+ P+ ++   ++ ACG  G
Sbjct: 410 -----PDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGG 461



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 7/206 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLE 310
           SP+    R I+D     G+  ++  ++ ++ +   T +   +  LM  +         + 
Sbjct: 305 SPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVA 364

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + MQ  G     A+Y +LL      G     ++++ E++       +  D  TY+ + 
Sbjct: 365 VLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRT-----AVPPDTATYNVLF 419

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +VF D  +++  +++  DML  GV P+ +T  +++ AC + GL   A  + E M + G  
Sbjct: 420 RVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMV 479

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
           P +     L++A   A  ++ A+  F
Sbjct: 480 PTADAYTGLVEALGHAAMYEEAYVAF 505



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 67/348 (19%), Positives = 128/348 (36%), Gaps = 58/348 (16%)

Query: 99  VSEGNVSKFASMLSLEMVASG-----------IVKSIREGRIDCVVGVLKKLNELGVAPL 147
            S GN+S+ A + S EM A+G           +    R G     V VL+++   G AP 
Sbjct: 319 ASAGNLSRAAELFS-EMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPT 377

Query: 148 ELFDGSGFKLLKNECQRLLD-SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD 206
                + +++L       LD  G    F G+ ++  E R  V                PD
Sbjct: 378 ----AATYRVL-------LDLYGRQGRFDGVRQLFREMRTAVP---------------PD 411

Query: 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266
                         ++LF    R FG        +  +    K    P+M  C  ++  C
Sbjct: 412 TATY----------NVLF----RVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAAC 457

Query: 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADM 324
           G  G +  +R + E +  + +      +  L+    H   +      +  M ++G +  +
Sbjct: 458 GHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTL 517

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            +YN L  A    G   L QE       +     ++    ++  +++ +        A+K
Sbjct: 518 ETYNALAFAYARGG---LFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVK 574

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
              +M  +   P+  +   ++NA   AG+++++   FEE+  +   P+
Sbjct: 575 AYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTMPS 622


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 108/269 (40%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     YK + + G  A +  +NIL+   C  G+  +A  ++  +     K  L+  V 
Sbjct: 121 FKLVWXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAI----TKWGLRPSVV 176

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +++T++  +          ++K  M ++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 177 SFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEM 236

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  ++                            
Sbjct: 237 LDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVY---------------------------- 268

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  + + L++EMR  
Sbjct: 269 --KQMLSQ-----------------SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMK 309

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ IS+T LID C   G++E A + R
Sbjct: 310 GLKPDKISYTTLIDGCCKEGDLETAFEHR 338



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 84/391 (21%), Positives = 164/391 (41%), Gaps = 39/391 (9%)

Query: 191 LDEEFRIVQLCVNKPDVNLA-IRYACIVP-----RADI-LFCNFVREFGKKRDLVSALRA 243
           L E   ++Q+ V++   N A   +A I+      R+DI +F   +  + +   L  A+  
Sbjct: 33  LPEAKNLIQVVVSRKGKNSASAVFAAILETQGTQRSDIYVFSGLITAYLESGFLRDAIEC 92

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VN 301
           Y  +++H        CR +++       +      Y+++       ++Y FN LM+    
Sbjct: 93  YRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWXFYKEILECGYPASLYFFNILMHRFCK 152

Query: 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
             D++  L V+  + K G+   + S+N L+      G+     E +     + A GV + 
Sbjct: 153 EGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGD---LDEGFRLKSAMHASGV-QP 208

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           DV+TYS ++           A ++ ++ML  G+ PN +T+++LI+     G V+ AM ++
Sbjct: 209 DVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVY 268

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL---FRSWTLSKTQVALGEDYDG---N 475
           ++ML     P+    N L+    +     +A  L    R   L   +++     DG    
Sbjct: 269 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKE 328

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA- 534
            D  +  EH+ +    N                   +     Y  L+   C +   + A 
Sbjct: 329 GDLETAFEHRKRMIQEN------------------IRLDDVAYTALISGLCQEGRSIDAE 370

Query: 535 -LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
            ++ EM +VGL P+  ++T++I+     G+V
Sbjct: 371 KMLREMLSVGLRPDTGTYTMIINEFCKKGDV 401



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +  +Y+ + SQ+++ ++  +N+L+       DLK   
Sbjct: 243 PNGVTFTTLID--GHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 300

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   M+  G+  D  SY  L+  CC  G+   A E     K +  + + +LD   Y+ +
Sbjct: 301 DLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFE---HRKRMIQENI-RLDDVAYTAL 356

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +MLS G+ P+T T++ +IN     G V     L +EM + G 
Sbjct: 357 ISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGH 416

Query: 430 EPNSQCCNILLQA 442
            P+    N+L+  
Sbjct: 417 VPSVVTYNVLMNG 429


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 159/372 (42%), Gaps = 38/372 (10%)

Query: 219 RADILFCNF-VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDYMKSR 276
           R DI+  N  +  +G+KR L  A  AY A  +    P       ++   CG  G   ++ 
Sbjct: 169 RPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCG-SGQLHRAE 227

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            +  +++   +     V+N+ ++  + A   +  +EVY+ M+K     +  +Y +++   
Sbjct: 228 GVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVY 287

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
             A   + +  ++ E+K +  K     ++ TY+ +V  FA     + A +V E+M  AG 
Sbjct: 288 GKANQPMSSLRVFREMKSVGCKP----NICTYTALVNAFAREGLCEKAEEVFEEMQQAGH 343

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC---QFDR 451
            P+   +++L+ A + AGL + A  +F  M   GCEP+    NIL+ A   A    + + 
Sbjct: 344 EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEA 403

Query: 452 AFRLFRSWTLSKTQVAL-----GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF- 505
           AF+  +   +  T  +           GN  R   +  +  +S      F  N+  +++ 
Sbjct: 404 AFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYG 463

Query: 506 ------------------DKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLS 545
                             D   +  P T+TYN+L+ A     Y  R++A    +   GL+
Sbjct: 464 RAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLA 523

Query: 546 PNHISWTILIDA 557
            + ++WT  I A
Sbjct: 524 ADVVTWTSRIGA 535



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 92/199 (46%), Gaps = 2/199 (1%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLG 319
           ++D  G  G + ++ A +++L+ Q +   +     L++ +A   ++    EV   + K G
Sbjct: 388 LVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSG 447

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           +  D  + N +L A   AG     + ++  ++  +       D  TY+ +V  +  A + 
Sbjct: 448 LRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYGRAGYL 507

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
                    + + G+  + +TW+S I A A      Q + +FEEM+ AGC P++    +L
Sbjct: 508 DRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVL 567

Query: 440 LQACVEACQFDRAFRLFRS 458
           L AC +  Q ++   + RS
Sbjct: 568 LAACSDERQVEQVTAIVRS 586



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 10/204 (4%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            V  FG+      A  A+   K+    P M     ++      G+  +   +   L    
Sbjct: 388 LVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSG 447

Query: 287 VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL-GVMA---DMASYNILLKACCLAGNT 340
           +  + +  N+++N    A  L     ++  M++  G  A   D ++YN+L+ A   AG  
Sbjct: 448 LRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYGRAG-- 505

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
                +    + L A+G L  DV T+++ +  +A  K +   L+V E+M+ AG  P+  T
Sbjct: 506 -YLDRMEAAFRSLAARG-LAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGT 563

Query: 401 WSSLINACANAGLVEQAMHLFEEM 424
              L+ AC++   VEQ   +   M
Sbjct: 564 AKVLLAACSDERQVEQVTAIVRSM 587



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 97/253 (38%), Gaps = 42/253 (16%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +Y +LL+A C +G    A+ +  E++    +  +      Y+  +     A+  + A++V
Sbjct: 209 TYALLLRAYCGSGQLHRAEGVISEMQ----RNGIPPTATVYNAYLDGLLKARCSEKAVEV 264

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + M       NT T+  +IN    A     ++ +F EM   GC+PN      L+ A   
Sbjct: 265 YQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAR 324

Query: 446 ACQFDRAFRLFRSWTLSKTQV------ALGEDY------DGNTDRISNMEHKDKQSITNT 493
               ++A  +F     +  +       AL E Y       G ++  S MEH         
Sbjct: 325 EGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEH--------- 375

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISW 551
                             +P   +YNIL+ A      +   +A   E++  G+ P   S 
Sbjct: 376 ---------------MGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSH 420

Query: 552 TILIDACGGSGNV 564
            +L+ A   SGNV
Sbjct: 421 MLLLSAHARSGNV 433



 Score = 39.3 bits (90), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 85/214 (39%), Gaps = 20/214 (9%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
            + D+  Y+ ++  +   +    A      +L A   P   T++ L+ A   +G + +A 
Sbjct: 168 FRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAE 227

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478
            +  EM + G  P +   N  L   ++A   ++A  +++     + +         NT+ 
Sbjct: 228 GVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRT--------NTZT 279

Query: 479 IS---NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA- 534
                N+  K  Q +++   F          K    KP   TY  L+ A   +    KA 
Sbjct: 280 YXLMINVYGKANQPMSSLRVFREM-------KSVGCKPNICTYTALVNAFAREGLCEKAE 332

Query: 535 -LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            +  EM+  G  P+  ++  L++A   +G  +GA
Sbjct: 333 EVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGA 366


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 118/231 (51%), Gaps = 15/231 (6%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTL 289
           G+ +D   A + +D  ++   S N+    T+I   G+C +   + A  + + ++S  +  
Sbjct: 282 GRTKD---AFQVFDEMRERGVSCNIVTYNTLIG--GLCREMKLNEANKVVDQMKSDGINP 336

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  +N+L++       L   L + ++++  G+   + +YNIL+   C  G+T  A ++ 
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKM- 395

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             VK +E +G+ K    TY+ ++  FA +   + A++++  M   G+ P+  T+S LI+ 
Sbjct: 396 --VKEMEERGI-KPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHG 452

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCN-ILLQACVEACQFDRAFRLFR 457
               G + +A  LF+ M++  CEPN    N ++L  C E   + RA +L +
Sbjct: 453 FCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSY-RALKLLK 502



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 142/334 (42%), Gaps = 37/334 (11%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN+ I  T+ID C   G+  K++ ++ ++    +  N   +  L+N        K   E
Sbjct: 195 SPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFE 254

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +Y+ MQ+ GV  ++ +YN ++   C  G T  A +++ E++    +GV   ++ TY+T++
Sbjct: 255 MYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRE---RGV-SCNIVTYNTLI 310

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                      A KV + M S G+ PN IT+++LI+     G + +A+ L  ++   G  
Sbjct: 311 GGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLS 370

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF-----RSWTLSKTQVALGEDYDGNTDRISNMEHK 485
           P+    NIL+           A ++      R    SK    +  D    +D   NME  
Sbjct: 371 PSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD---NMEKA 427

Query: 486 DKQSIT-NTPNFVPNSH-YSSFDKRFSFK-------------------PTTTTYNILMKA 524
            +  ++      VP+ H YS     F  K                   P    YN ++  
Sbjct: 428 IQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILG 487

Query: 525 CCTD--YYRVKALMNEMRTVGLSPNHISWTILID 556
            C +   YR   L+ EM    L+PN  S+  +I+
Sbjct: 488 YCKEGSSYRALKLLKEMEEKELAPNVASYRYMIE 521



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 136/333 (40%), Gaps = 47/333 (14%)

Query: 282 LRSQNVTLNIYVFNSLMN------VNAHDLKFTLEV----------YKNMQKLGVMADMA 325
           ++SQ++ L+I  FN +++       N  +   T  V          + N  K  V+ D+ 
Sbjct: 105 VQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVY 164

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           S+ IL+K CC AG    + ++  E+           +V  Y+T++         + A  +
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFG----FSPNVVIYTTLIDGCCKKGEIEKAKDL 220

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             +M   G+  N  T++ LIN     G+ +Q   ++E+M + G  PN    N ++    +
Sbjct: 221 FFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCK 280

Query: 446 ACQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHKDK-----QSITNTPNFV 497
             +   AF++F   R   +S   +       G   R   +   +K     +S    PN +
Sbjct: 281 DGRTKDAFQVFDEMRERGVS-CNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLI 339

Query: 498 P-NSHYSSF---------------DKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEM 539
             N+    F                K     P+  TYNIL+   C   D      ++ EM
Sbjct: 340 TYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEM 399

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
              G+ P+ +++TILID    S N+E A+Q R 
Sbjct: 400 EERGIKPSKVTYTILIDTFARSDNMEKAIQLRL 432



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 12/222 (5%)

Query: 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID-VCGICGDY 272
           +C +   + L     RE      L  A +  D  K    +PN+    T+ID  CG+ G  
Sbjct: 300 SCNIVTYNTLIGGLCREM----KLNEANKVVDQMKSDGINPNLITYNTLIDGFCGV-GKL 354

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
            K+ ++  DL+S+ ++ ++  +N L++      D     ++ K M++ G+     +Y IL
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTIL 414

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +     + N   A ++   ++ L     L  DV TYS ++  F        A ++ + M+
Sbjct: 415 IDTFARSDNMEKAIQLRLSMEELG----LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMV 470

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                PN + ++++I      G   +A+ L +EM +    PN
Sbjct: 471 EKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPN 512


>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 461

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 146/333 (43%), Gaps = 24/333 (7%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           FC  +R++ +   +  A+  ++   K+   PN+     ++       +  K++ I++ ++
Sbjct: 115 FCIMMRKYARANKVDEAVYTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMK 174

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            Q V  +   ++ L+     A +L    EV++ M + G   D+ +Y I++   C AG   
Sbjct: 175 GQFVP-DEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGRVD 233

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A E+   VK ++  G  +   F YS +V  +      + A+    +M   G+  + + +
Sbjct: 234 EAVEV---VKEMDV-GNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAY 289

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-RSWT 460
           ++LI A       +    + +EM   G  PNS+ CN+++ + +   Q DRAFR+F R   
Sbjct: 290 NALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIK 349

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
           L +       D D  T  I     K++  +              + K   F P+  T++ 
Sbjct: 350 LCEP------DADTYTMMIKMFCEKNELEMA--------LKIWKYMKSKQFVPSMHTFSA 395

Query: 521 LMKACCTDYYRVKA--LMNEMRTVGLSPNHISW 551
           L+K  C      KA  +M EM   G+ P+ I++
Sbjct: 396 LIKGLCEKDNAAKACVVMEEMIEKGIRPSRITF 428


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/378 (20%), Positives = 163/378 (43%), Gaps = 37/378 (9%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           +++   +  F K  ++ SA R +D  +K   SP+ +I  T + +CG+C  G  M++  ++
Sbjct: 359 VIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPD-FITYTAV-ICGLCQTGRVMEADKLF 416

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
            ++  + +  +   + +L++    +  +K    ++  M ++G+  ++ +Y  L    C  
Sbjct: 417 HEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKC 476

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A E+  E+     +  L+L+++TY+++V     A     A+K+ +DM  AG  P+
Sbjct: 477 GEVDTANELLHEM----CRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPD 532

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +T+++L++A   +  + +A  L  +ML    +P     N+L+     +   +   +L +
Sbjct: 533 AVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLK 592

Query: 458 SWTLSK-------------TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
            W L K              Q  +  +    T+    M  K      NT N +   H  +
Sbjct: 593 -WMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKA 651

Query: 505 FDKRFS-----------FKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISW 551
            + + +           F  T ++YN L+K       +   + L  +MR  GL  +   +
Sbjct: 652 RNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIY 711

Query: 552 TILIDACGGSGNVEGALQ 569
            I  D     G +E  L+
Sbjct: 712 NIFADINYDEGKMELTLE 729



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 123/318 (38%), Gaps = 59/318 (18%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN Y    +I +    G   ++  +  ++ S+ +  +  ++ +L++      ++     +
Sbjct: 321 PNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRL 380

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV--KHLEAKGVLKLDVFTYSTI 369
           +  MQK  +  D  +Y  ++   C  G  + A +++ E+  K LE       D  TY+ +
Sbjct: 381 FDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEP------DEVTYTAL 434

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +      + A  +   ML  G+TPN +T+++L +     G V+ A  L  EM + G 
Sbjct: 435 IDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGL 494

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           E N    N L+    +A   D+A +L +   ++                           
Sbjct: 495 ELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVA--------------------------- 527

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
                                F P   TY  LM A C     V+A  L+ +M    L P 
Sbjct: 528 --------------------GFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPT 567

Query: 548 HISWTILIDACGGSGNVE 565
            +++ +L++    SG +E
Sbjct: 568 VVTFNVLMNGFCMSGMLE 585


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 166/407 (40%), Gaps = 60/407 (14%)

Query: 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
            +I +   +  F     +  A++  +  KKH   P +    T++D  G  G   ++ ++ 
Sbjct: 527 GEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLL 586

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
            ++  Q    ++  ++SLM         + +L ++  M + G +AD+++Y++++   C +
Sbjct: 587 REMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKS 646

Query: 338 GNTVLAQEIYGEVKHLEAKGVLK-------------------------------LDVFTY 366
            +   A +++G +K    + +L                                 D F Y
Sbjct: 647 DDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVY 706

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + +V     +     A K+ + M +  + P+  T++SL++    +G +E+A ++F +M +
Sbjct: 707 NIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTE 766

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK------TQVALGEDYDGNTDRIS 480
            G EP+      L+    +  +   A  +FR+    +      T  +L  D  G   R+ 
Sbjct: 767 EGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSL-IDSLGKEGRVE 825

Query: 481 NMEHKDKQSITN--TPNF-VPNSHYSSFDK---------------RFSFKPTTTTYNILM 522
              +  + SI+   TPN  V +S   SF K               R    P   TYN L+
Sbjct: 826 EAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLL 885

Query: 523 K--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              A        + L+ EM  VG  P+ +++ ILID  G  G V+ A
Sbjct: 886 SGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEA 932



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/378 (20%), Positives = 153/378 (40%), Gaps = 43/378 (11%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I +   +   GK  +   A   +   K     PN+     +I V G  G   ++  ++ D
Sbjct: 393 IAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHD 452

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           L+ Q    +++ +N+L++V      +   L + K M + G              C ++ +
Sbjct: 453 LKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKG------------GECIISRD 500

Query: 340 TVLAQE--IYGEVKHLE--AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
           +    E  I G  + +E  + G   L   TY+T++  F        A+K+ E M      
Sbjct: 501 SNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECI 560

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P  +T+++L++    AG +++A+ L  EM + GCEP+    + L+ +  +  Q + +  L
Sbjct: 561 PTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSL 620

Query: 456 F------------RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
           F             +++L    +   +D D   D    M+ +  + +      + +S   
Sbjct: 621 FDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVK 680

Query: 504 SFDKRFSFK-----------PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHIS 550
                F+ +           P T  YNI++          +A  L++ M+   + P+  +
Sbjct: 681 DEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFT 740

Query: 551 WTILIDACGGSGNVEGAL 568
           +T L+D  G SG +E A 
Sbjct: 741 YTSLLDGLGKSGRLEEAF 758



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 157/373 (42%), Gaps = 35/373 (9%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           L  + +R FG   ++  AL  ++  K    +P+  +   ++++    G Y  +  ++  L
Sbjct: 219 LLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKL 278

Query: 283 ---RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
              R Q       +F    N +   L    E  + M K G+   + ++ +L+ A   +GN
Sbjct: 279 GQFRIQPDAQTFRIFVHSFNRSGR-LDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGN 337

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A + +  +K+L        +V TY+T+V   A A   + A +V  +M     +P+ I
Sbjct: 338 IDEACKFFNGMKNLRCSP----NVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAI 393

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +++LI+    AG  + A  LF+EM   G  PN +  NI++    +A +   A++LF   
Sbjct: 394 AYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDL 453

Query: 460 TLSKTQVALGEDYDGNT-----------DR----ISNMEHKDKQS-ITNTPNFVPNSHYS 503
              K Q A+ + +  NT           D+    I  M  K  +  I+   N        
Sbjct: 454 ---KEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIE 510

Query: 504 SFDKRFSFKP------TTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILI 555
             D+   +           TYN LM A   + +  +A  L+  M+     P  +++T L+
Sbjct: 511 GADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLV 570

Query: 556 DACGGSGNVEGAL 568
           D  G +G ++ A+
Sbjct: 571 DGLGKAGRLDEAV 583



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 137/319 (42%), Gaps = 20/319 (6%)

Query: 240  ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
            A +  D+ K     P+++   +++D  G  G   ++  ++  +  +    ++  + SLM+
Sbjct: 722  ACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMD 781

Query: 300  V--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
            V      L   L +++ M K   + D+ +Y+ L+ +    G     +E Y   ++  +KG
Sbjct: 782  VLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRV---EEAYYFFENSISKG 838

Query: 358  VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
                +V  YS+++  F        AL++ E+M      PN +T+++L++  A AG +  A
Sbjct: 839  CTP-NVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVA 897

Query: 418  MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
              L EEM + GC P+    NIL+    +    D A   F+       +  +  D    T 
Sbjct: 898  EKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRM----KEKGIVPDVITFTS 953

Query: 478  RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKAL 535
             I ++   DK              + S ++   + P+  TYN+L+         +    +
Sbjct: 954  LIESLGKVDKL-------LEACELFDSMEEE-GYNPSVVTYNVLIDILGRAGKVHEAAMI 1005

Query: 536  MNEMRTVGLSPNHISWTIL 554
             +EM+  G  P+ I+  I+
Sbjct: 1006 FHEMKVKGCMPDGITIGIM 1024



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 126/318 (39%), Gaps = 55/318 (17%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ--NVTLNIYVFNSLMNVNAHDLKFTLEVY 312
           +M++  +++   G   +   +  I+  ++S   N + N+Y F   + V        + V+
Sbjct: 216 SMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVF 275

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             + +  +  D  ++ I + +   +G    A E   E+     K  +   V T++ ++  
Sbjct: 276 GKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEM----IKSGIDPGVHTFTVLIDA 331

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
              +     A K    M +   +PN +T+++L+N  A AG +E+A  +F EM +  C P+
Sbjct: 332 LVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPD 391

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
           +   N L+    +A + D A  LF+                         E KD+     
Sbjct: 392 AIAYNTLIDGLGKAGEADMACGLFK-------------------------EMKDR----- 421

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHIS 550
               VPN                 TYNI++        + +A  L ++++  G  P+  +
Sbjct: 422 --GLVPN---------------LRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFT 464

Query: 551 WTILIDACGGSGNVEGAL 568
           +  LID  G  G ++  L
Sbjct: 465 YNTLIDVLGKGGQMDKVL 482


>gi|414888267|tpg|DAA64281.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 873

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 153/357 (42%), Gaps = 41/357 (11%)

Query: 224 FCNFVREFGKKRDLVSALRAYD-ASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYE 280
           F    REF ++ D   +LR +    ++    P+ +I   +I V G  G  +  K   ++ 
Sbjct: 106 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFH 165

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDL--KFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           DL +++ T   Y   SL+   A +   +    +   M+  GV    A+YN +L AC  A 
Sbjct: 166 DLPAESRTALSYT--SLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARAT 223

Query: 339 NTVLAQE----IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           +  +  +    ++ E++H +A   ++ D+ TY+T++   A       +  +   ML AGV
Sbjct: 224 DPPVPFDMLLGLFAEMRH-DASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGV 282

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           +P+T+++  +++A A+AG + +A  LF EM   G   ++     L++A         A  
Sbjct: 283 SPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVA 342

Query: 455 LFRSW-------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
           + R         T +  +V L  D  G   R   +    ++  T  P             
Sbjct: 343 VLRQMQADGCAPTAATYRVLL--DLYGRQGRFDGVRQLFREMRTAVP------------- 387

Query: 508 RFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
                P T TYN+L +       +  V  L ++M   G+ P+ ++   ++ ACG  G
Sbjct: 388 -----PDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGG 439



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 7/206 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLE 310
           SP+    R I+D     G+  ++  ++ ++ +   T +   +  LM  +         + 
Sbjct: 283 SPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVA 342

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + MQ  G     A+Y +LL      G     ++++ E++       +  D  TY+ + 
Sbjct: 343 VLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMR-----TAVPPDTATYNVLF 397

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +VF D  +++  +++  DML  GV P+ +T  +++ AC + GL   A  + E M + G  
Sbjct: 398 RVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMV 457

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
           P +     L++A   A  ++ A+  F
Sbjct: 458 PTADAYTGLVEALGHAAMYEEAYVAF 483



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 67/348 (19%), Positives = 128/348 (36%), Gaps = 58/348 (16%)

Query: 99  VSEGNVSKFASMLSLEMVASG-----------IVKSIREGRIDCVVGVLKKLNELGVAPL 147
            S GN+S+ A + S EM A+G           +    R G     V VL+++   G AP 
Sbjct: 297 ASAGNLSRAAELFS-EMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPT 355

Query: 148 ELFDGSGFKLLKNECQRLLD-SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD 206
                + +++L       LD  G    F G+ ++  E R  V                PD
Sbjct: 356 ----AATYRVL-------LDLYGRQGRFDGVRQLFREMRTAVP---------------PD 389

Query: 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266
                         ++LF    R FG        +  +    K    P+M  C  ++  C
Sbjct: 390 TATY----------NVLF----RVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAAC 435

Query: 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADM 324
           G  G +  +R + E +  + +      +  L+    H   +      +  M ++G +  +
Sbjct: 436 GHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTL 495

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            +YN L  A    G   L QE       +     ++    ++  +++ +        A+K
Sbjct: 496 ETYNALAFAYARGG---LFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVK 552

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
              +M  +   P+  +   ++NA   AG+++++   FEE+  +   P+
Sbjct: 553 AYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTMPS 600


>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 932

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           +KR +  A+   D        PN +   T++      GD  K+   +  LR++ + +++Y
Sbjct: 611 EKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVY 670

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            + +L+     +  ++  L V K M    +  +   YNIL+      G+   A ++   +
Sbjct: 671 TYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADL---M 727

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + +  +G+L  D+ TY++ +     A   Q A ++ ++M ++G+ PN  T+++LIN  A 
Sbjct: 728 QQMRKEGLLP-DIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWAR 786

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           A + E+A+  FEEM  AG +P+    + L+ + +    F +++
Sbjct: 787 ASMPEKALSCFEEMKLAGFKPDKAVYHCLVTSLLSRATFAQSY 829



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 110/242 (45%), Gaps = 8/242 (3%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   +  F +  ++  AL  +D  ++    P ++    +I          K+ AI +++ 
Sbjct: 567 FLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMN 626

Query: 284 SQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              V  N + + +LM   A   D +   + +  ++  G+  D+ +Y  LLK+CC +G   
Sbjct: 627 VAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRM- 685

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AKWWQMALKVKEDMLSAGVTPNTIT 400
             Q      K + AK + + + F Y+ ++  +A     W+ A  + + M   G+ P+  T
Sbjct: 686 --QSALAVTKEMSAKNIPR-NTFVYNILIDGWARRGDVWEAA-DLMQQMRKEGLLPDIHT 741

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++S INAC  AG +++A  + +EM  +G +PN +    L+     A   ++A   F    
Sbjct: 742 YTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMK 801

Query: 461 LS 462
           L+
Sbjct: 802 LA 803



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 153/370 (41%), Gaps = 66/370 (17%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLG 319
           ++   G  GD   +R  +E +R++ +  + +V++SL++  A   D++  L   + M++ G
Sbjct: 290 MVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEG 349

Query: 320 VMADMASYNILLKACCLAGNTVLAQE---------------IYGE--------------- 349
           +   + +Y+I++      GN   A                 IYG                
Sbjct: 350 IEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQICNMDRAE 409

Query: 350 --VKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
             V+ +E +G+   +D+  Y T++  +      +  L V + +   G  P+ I++  LIN
Sbjct: 410 ALVREMEEQGIDAPIDI--YHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLIN 467

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS--KT 464
                G V +A+ + + M  +G + N +  ++L+   ++   +  AF +F  +T    K 
Sbjct: 468 LYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKP 527

Query: 465 QVALGEDYD------GNTDR----ISNMEHKDKQSITNTPNFVPNSH-----------YS 503
            V L  +        GN DR    +  M+ +  +  T T  F+P  H             
Sbjct: 528 DVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRT--FLPIIHGFARAGEMRRALE 585

Query: 504 SFD--KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACG 559
            FD  +R    PT  TYN L+          KA  +++EM   G+ PN  ++T L+    
Sbjct: 586 IFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYA 645

Query: 560 GSGNVEGALQ 569
             G+ E A Q
Sbjct: 646 SLGDTEKAFQ 655



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 138/352 (39%), Gaps = 55/352 (15%)

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKN 314
           Y C  +I++    G   K+  I + ++   +  N+  ++ L+N  +   D      V+++
Sbjct: 462 YGC--LINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFED 519

Query: 315 MQKLGVMADMASYNILLKACCLAGNT--------VLAQE------------IYGEVKHLE 354
             K G+  D+  YN ++ A C  GN          + +E            I+G  +  E
Sbjct: 520 FTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGE 579

Query: 355 AKGVLKL-----------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            +  L++            V TY+ ++    + +    A+ + ++M  AGV PN  T+++
Sbjct: 580 MRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTT 639

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--- 460
           L+   A+ G  E+A   F  +   G E +      LL++C ++ +   A  + +  +   
Sbjct: 640 LMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKN 699

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
           + +         DG   R    E  D          +P+ H               TY  
Sbjct: 700 IPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIH---------------TYTS 744

Query: 521 LMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
            + ACC   D  +   ++ EM   G+ PN  ++T LI+    +   E AL C
Sbjct: 745 FINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPEKALSC 796



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 84/423 (19%), Positives = 159/423 (37%), Gaps = 92/423 (21%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDYMKSRAIYE 280
           + +   V  F K  +  +A   ++ +K+ L S N  I   II   C IC +  ++ A+  
Sbjct: 355 VTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQIC-NMDRAEALVR 413

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++  Q +   I +++++M+      + +  L V+  +++ G    + SY  L+      G
Sbjct: 414 EMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLINLYTKVG 473

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A EI    K ++  G+ K ++ TYS ++  F   K W  A  V ED    G+ P+ 
Sbjct: 474 KVSKALEI---SKMMKMSGI-KHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDV 529

Query: 399 ITWSSLINAC-----------------------------------ANAGLVEQAMHLFEE 423
           + ++++I A                                    A AG + +A+ +F+ 
Sbjct: 530 VLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALEIFDM 589

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M ++GC P     N L+   VE  Q  +A  +     ++           G  +      
Sbjct: 590 MRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGV---------GPNEHTYTTL 640

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---------------- 527
            +   S+ +T        Y +  +    +    TY  L+K+CC                 
Sbjct: 641 MQGYASLGDTEKAF---QYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSA 697

Query: 528 ---------------------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
                                D +    LM +MR  GL P+  ++T  I+AC  +G+++ 
Sbjct: 698 KNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQK 757

Query: 567 ALQ 569
           A +
Sbjct: 758 ATE 760



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 105/238 (44%), Gaps = 6/238 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +L+ N +  F    ++  A+      +K    P       II      G+  ++  I++ 
Sbjct: 530 VLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALEIFDM 589

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R       ++ +N+L+   V    +   + +   M   GV  +  +Y  L++     G+
Sbjct: 590 MRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGD 649

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A + +  +++   +G L++DV+TY  ++K    +   Q AL V ++M +  +  NT 
Sbjct: 650 TEKAFQYFTVLRN---EG-LEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTF 705

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            ++ LI+  A  G V +A  L ++M + G  P+       + AC +A    +A  + +
Sbjct: 706 VYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQ 763



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           Y +++K     G+   A++ +   + + A+G+ +     YS+++  +A  +  + AL   
Sbjct: 287 YGLMVKYYGRRGDMHHARQTF---ESMRARGI-EPSSHVYSSLIHAYAVGRDMEEALHCV 342

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
             M   G+    +T+S ++   A  G  + A H FEE  +     N+     ++ A  + 
Sbjct: 343 RKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQI 402

Query: 447 CQFDRAFRLFR 457
           C  DRA  L R
Sbjct: 403 CNMDRAEALVR 413


>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 890

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 138/339 (40%), Gaps = 56/339 (16%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           L    +   G+  ++  AL  ++ ++       ++    +I   G  G +  +  ++  +
Sbjct: 215 LVSAMIGTLGRLGEINLALGLFERARLEGYGSTVHSFSAMISAFGRNGRFPDAVDLFRSM 274

Query: 283 RSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
            S  V  N+  +NS+++  A         ++ Y  M   G+M D  +YN LL  C   G 
Sbjct: 275 SSWGVVPNVITYNSIIDAGAKGEVSFDVVVKFYDEMIANGLMPDRLTYNSLLSVCASKGM 334

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             +AQ++  E+ H      +  DVFTY+T +     A    +A +V E+M S  V PN +
Sbjct: 335 WEMAQKLLSEMDHR----CIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVV 390

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+S++++  A A L+E A++L+EEM              L   C++   ++         
Sbjct: 391 TYSAMMDGYAKANLLEDALNLYEEM-------------KLRSVCLDRVSYN--------- 428

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
           TL      LG + D   ++   ME                        R        TYN
Sbjct: 429 TLVGIYEKLG-NLDEAIEKCKEME------------------------RSGINRDVVTYN 463

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILID 556
            L+        Y  V+ L  EM+   + PN ++++ +ID
Sbjct: 464 ALLSGYGKHGMYDEVRRLFEEMKARNIYPNTLTYSTMID 502



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 114/241 (47%), Gaps = 17/241 (7%)

Query: 213 YACIVPRADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271
           + CIVP  D+   N ++    K   +  A R ++        PN+     ++D       
Sbjct: 347 HRCIVP--DVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANL 404

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNI 329
              +  +YE+++ ++V L+   +N+L+ +     +L   +E  K M++ G+  D+ +YN 
Sbjct: 405 LEDALNLYEEMKLRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNA 464

Query: 330 LLKACCLAGNTVLAQEIYGEVKHL----EAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           LL      G       +Y EV+ L    +A+ +   +  TYST++ ++   + +Q A+ V
Sbjct: 465 LLSGYGKHG-------MYDEVRRLFEEMKARNIYP-NTLTYSTMIDMYTKGEMFQEAMDV 516

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             +   A +  + + +S++I+     GL+E ++ L   M++ G +PN    N ++ A  +
Sbjct: 517 YREFKMARLEIDVVFYSAIIDTLCKNGLMESSIMLLMAMMEKGIKPNVVTFNSIIDASQQ 576

Query: 446 A 446
           +
Sbjct: 577 S 577



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/215 (17%), Positives = 102/215 (47%), Gaps = 6/215 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P+     +++ VC   G +  ++ +  ++  + +  +++ +N+ ++    A  +     V
Sbjct: 317 PDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLARRV 376

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M    V  ++ +Y+ ++     A     A  +Y E+K    + V  LD  +Y+T+V 
Sbjct: 377 FEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMK---LRSVC-LDRVSYNTLVG 432

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           ++        A++  ++M  +G+  + +T+++L++     G+ ++   LFEEM      P
Sbjct: 433 IYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYP 492

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           N+   + ++    +   F  A  ++R + +++ ++
Sbjct: 493 NTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEI 527


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 120/487 (24%), Positives = 204/487 (41%), Gaps = 85/487 (17%)

Query: 74  YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASG--IVKSIRE-GRID 130
           Y  +   LA +G L+     V+SV       SKF  M  +  V S   ++KS    G ++
Sbjct: 147 YVSLIDVLATNGVLDS----VKSVF------SKFKEMGLIMTVYSSNSLIKSFGNLGMVE 196

Query: 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE 190
            V+ V +++ E G+ P  LF    +  L N    L++S  +E    + EV+E  ++    
Sbjct: 197 EVLWVWRRMKENGIEP-SLFS---YNFLVNG---LVNSKFIESAERVFEVMENGKI---- 245

Query: 191 LDEEFRIVQLCVNKPDV---NLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247
                         PDV   N  I+  C              E GK R     L+A +  
Sbjct: 246 -------------GPDVVTYNTMIKGYC--------------EVGKTRKAFEKLKAMELR 278

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307
                +P+     T+I  C   GD+     +Y ++  + + +  +V++ ++     D K 
Sbjct: 279 N---VAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGGLCKDGKR 335

Query: 308 T--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
                V++NM   G  A++A Y  L+ +    GN   A  ++   K ++ +G L+ D  T
Sbjct: 336 VEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLF---KRMKKEG-LEPDEVT 391

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y  IV     +     AL+  E     GV  N + +SSLI+    +G V++A  +F EM+
Sbjct: 392 YGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMV 451

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD--GNTDRISNM- 482
           + GC P+S C N L+ A  +  + D A        LSK     G D      T  I+ + 
Sbjct: 452 KKGCPPDSYCYNALIDALAKCGKIDEAL------ALSKRMEVDGCDQTVYTYTILITGLF 505

Query: 483 -EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEM 539
            EH++++++T     +        DK  +  PT   +  L    C      +A  +++EM
Sbjct: 506 REHRNEEALTLWDLMI--------DKGIT--PTAAAFRALSTGLCLSGKVARACKILDEM 555

Query: 540 RTVGLSP 546
             +G+ P
Sbjct: 556 APMGVIP 562



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 140/328 (42%), Gaps = 24/328 (7%)

Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAH 303
           A K+   + N+    ++IDV    G     ++++   +   + + +Y  NSL+    N  
Sbjct: 134 AGKQKKYTHNLECYVSLIDVLATNGVLDSVKSVFSKFKEMGLIMTVYSSNSLIKSFGNLG 193

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
            ++  L V++ M++ G+   + SYN L+     +     A+ ++     +   G +  DV
Sbjct: 194 MVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVF----EVMENGKIGPDV 249

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY+T++K + +    + A +  + M    V P+ IT+ +LI AC   G  +  + L+ E
Sbjct: 250 VTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHE 309

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS--KTQVALGEDYDGNTDRISN 481
           M + G E      ++++    +  +    + +F +      K  VA+      +  +  N
Sbjct: 310 MDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGN 369

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEM 539
           M     +++                K+   +P   TY +++ + C      +AL  M   
Sbjct: 370 M----GEAMLLFKRM----------KKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFC 415

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
              G++ N + ++ LID  G SG V+ A
Sbjct: 416 SGKGVAVNAMFYSSLIDGLGKSGRVDEA 443



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 9/144 (6%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M K G   D   YN L+ A    G      E     K +E  G  +  V+TY+ ++
Sbjct: 446 IFYEMVKKGCPPDSYCYNALIDALAKCGKI---DEALALSKRMEVDGCDQ-TVYTYTILI 501

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                    + AL + + M+  G+TP    + +L      +G V +A  + +EM   G  
Sbjct: 502 TGLFREHRNEEALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVARACKILDEMAPMGVI 561

Query: 431 PNS---QCCNILLQA--CVEACQF 449
           P +      NIL +A    EAC+ 
Sbjct: 562 PETAFDDMINILCKAGRIKEACKL 585


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 145/331 (43%), Gaps = 44/331 (13%)

Query: 274 KSRAIYED---LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           K R  YE    LRS+  T++I   N+L+   V    ++    +Y+ + + GV  ++ + N
Sbjct: 170 KLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLN 229

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           I++ A C  G          EV+    KGV   D+ TY+T++  ++     + A ++   
Sbjct: 230 IMVNALCKDGKMEKVGTFLSEVQE---KGVYP-DIVTYNTLISAYSSQGLMEEAFELMHA 285

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC-NILLQACV--E 445
           M S G +P   T++++IN     G  E+A  +F EML++G  P+S    ++L++AC   +
Sbjct: 286 MPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGD 345

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGE-----DYDGNTDRISNMEHKDKQSITNTPNFVP-N 499
           A + +  F   RS  +    V            GN D+     +  K++       +P N
Sbjct: 346 AVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA-----GLIPDN 400

Query: 500 SHYSSFDKRFSFKPTTT-------------------TYNILMKACCTDYYRVKA--LMNE 538
             Y+   + +  K   +                   TYN ++   C      +A  L NE
Sbjct: 401 VIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 460

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           M   GL P+  + TILID     GN++ A++
Sbjct: 461 MTERGLFPDSYTLTILIDGHCKLGNLQNAME 491



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 159/373 (42%), Gaps = 39/373 (10%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +R   +VP   + F + +  F +  +L  AL  +++ K+    P+  I   +I   G C 
Sbjct: 356 MRSRDVVPDL-VCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQ--GYCR 412

Query: 271 DYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMAS 326
             M S A  +  ++  Q   +++  +N++++       L    +++  M + G+  D  +
Sbjct: 413 KGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYT 472

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
             IL+   C  GN   A E++ ++K       +KLDV TY+T++  F        A ++ 
Sbjct: 473 LTILIDGHCKLGNLQNAMELFKKMKEKR----IKLDVVTYNTLLDGFGKVGDIDTAKEIW 528

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVE 445
            DM+S  + P  I++S L+NA  + G + +A  +++EM+    +P    CN +++  C  
Sbjct: 529 ADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRS 588

Query: 446 ACQFDRAFRL-------FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
               D    L       F    +S   +  G   + N  +   +  K ++          
Sbjct: 589 GNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEE---------- 638

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILID 556
                   K+    P   TYN ++   C +      +A++ +M   G++P+  ++T LI+
Sbjct: 639 --------KQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLIN 690

Query: 557 ACGGSGNVEGALQ 569
                 N+  A +
Sbjct: 691 GFVSQDNLTEAFR 703



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 20/214 (9%)

Query: 231 FGKKRDLVSA--LRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQN 286
           FGK  D+ +A  + A   SK+ L +P   I  +I+ V  +C  G   ++  +++++ S++
Sbjct: 515 FGKVGDIDTAKEIWADMVSKEILPTP---ISFSIL-VNALCSKGHLSEAFRVWDEMISKS 570

Query: 287 VTLNIYVFNSLM-----NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           +   + + NS++     + NA D +  LE    M   G + D  SYN L+       N  
Sbjct: 571 IKPTVMICNSMIKGYCRSGNASDGEIFLE---KMISEGFVPDCISYNTLIYGFVKEENMS 627

Query: 342 LAQEIYGEVKHLEAK-GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
            A   +G VK +E K G L  DVFTY++I+  F      + A  V   M+  GV P+  T
Sbjct: 628 KA---FGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRST 684

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           ++SLIN   +   + +A    +EMLQ G  P+ +
Sbjct: 685 YTSLINGFVSQDNLTEAFRFHDEMLQRGFSPDDK 718



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 100/202 (49%), Gaps = 6/202 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           SP+    R+++      GD +++  I+ D+RS++V  ++  F+S+M++   + +L   L 
Sbjct: 327 SPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALM 386

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            + ++++ G++ D   Y IL++  C  G    A  +  E+     +G   +DV TY+TI+
Sbjct: 387 YFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQ---QGC-AMDVVTYNTIL 442

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 K    A K+  +M   G+ P++ T + LI+     G ++ AM LF++M +   +
Sbjct: 443 HGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIK 502

Query: 431 PNSQCCNILLQACVEACQFDRA 452
            +    N LL    +    D A
Sbjct: 503 LDVVTYNTLLDGFGKVGDIDTA 524



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/209 (20%), Positives = 97/209 (46%), Gaps = 10/209 (4%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFT 308
           SP +Y   T+I+  G+C  G Y +++ ++ ++    ++ +   + SL+       D   T
Sbjct: 292 SPGVYTYNTVIN--GLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVET 349

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
             ++ +M+   V+ D+  ++ ++     +GN   A   +  VK     G++  D   Y+ 
Sbjct: 350 ENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE---AGLIP-DNVIYTI 405

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +++ +        A+ ++ +ML  G   + +T++++++      ++ +A  LF EM + G
Sbjct: 406 LIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERG 465

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
             P+S    IL+    +      A  LF+
Sbjct: 466 LFPDSYTLTILIDGHCKLGNLQNAMELFK 494


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 119/291 (40%), Gaps = 44/291 (15%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           + N L+  ++ D+ +  E+Y NM    +   + +YN+L+ ACC  G+ + A+ +  E+  
Sbjct: 157 LLNGLLKKSSFDIMW--ELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEM-- 212

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
              K  ++  V  Y+T++           A  +   M  +GV PN  T++ L++      
Sbjct: 213 --VKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTA 270

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALG 469
            V+QA+HL++ ML  G +PN     IL+ A  +  +   A R F     + +    V   
Sbjct: 271 NVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFN 330

Query: 470 EDYDG---------NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
              DG          TD +  ME                        +F   P   TY+I
Sbjct: 331 SLIDGYSKAGNCSEATDLLLEME------------------------KFKISPDVFTYSI 366

Query: 521 LMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L+K  C          ++  M   G+  N + +  LID     GN+E AL+
Sbjct: 367 LIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALE 417



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/327 (18%), Positives = 134/327 (40%), Gaps = 26/327 (7%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P +     ++D C   GD ++++++  ++  + +   + ++ +L++    + K      +
Sbjct: 184 PTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESM 243

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M+  GV  ++ +YN+L+   C   N   A  +Y   + +   G L+ +V T+  ++ 
Sbjct: 244 FRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLY---QGMLDDG-LQPNVVTFGILID 299

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                +    A +    M   GV PN + ++SLI+  + AG   +A  L  EM +    P
Sbjct: 300 ALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISP 359

Query: 432 NSQCCNILLQACVEACQF------DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
           +    +IL++    AC+       D   +      +    V      DG      NME  
Sbjct: 360 DVFTYSILIK---NACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKE-GNME-- 413

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVG 543
                         + + S  +R   +P    Y ++++      +    +M   +M  +G
Sbjct: 414 ------KALEIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMMLHADMIKMG 467

Query: 544 LSPNHISWTILIDACGGSGNVEGALQC 570
           + PN ++  ++      +G ++ AL C
Sbjct: 468 IVPNEVTSQVVRRGYQDNGYLKSALWC 494



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 92/202 (45%), Gaps = 6/202 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   +    K R+L++A R +    K    PN+ +  ++ID     G+  ++  +  +
Sbjct: 292 VTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLE 351

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLE---VYKNMQKLGVMADMASYNILLKACCLAG 338
           +    ++ +++ ++ L+  NA  L    E   + K M+K GV A+   YN L+   C  G
Sbjct: 352 MEKFKISPDVFTYSILIK-NACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEG 410

Query: 339 NTVLAQEIYGEVKHLE--AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           N   A EI+   K      +  L+ D   Y+ +++   +AK     + +  DM+  G+ P
Sbjct: 411 NMEKALEIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVP 470

Query: 397 NTITWSSLINACANAGLVEQAM 418
           N +T   +     + G ++ A+
Sbjct: 471 NEVTSQVVRRGYQDNGYLKSAL 492


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 144/335 (42%), Gaps = 43/335 (12%)

Query: 265 VCGICGDYMKSRAIYEDLR--SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL---G 319
           V G+CG  M ++A+ E +R  S   T  ++++N ++       +  ++ YK ++K+    
Sbjct: 61  VDGLCGAGMANQAL-ELVRELSGVYTPTLFIYNGIITGLCRASR-VMDAYKVLEKMVEES 118

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           ++ ++ +Y ILL   C +  T LA+E++ E+K    +   K +  TY T+++  + A   
Sbjct: 119 IVPNVFTYTILLNGLCRSNKTKLAREVFQEMK----RNGCKPNPITYGTLIQHLSRAGEI 174

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
             AL+V  +  S  +  + IT ++++     A  ++ A+   EEM Q G  PN    + L
Sbjct: 175 DEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNL 234

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD--KQSITN----- 492
           +    +  + DR  R F      K        Y G  D +    + D  ++S+       
Sbjct: 235 VHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSG 294

Query: 493 -TPNFVPNS-------HYSSFD---------KRFSFKPTTTTYNILMKACC-----TDYY 530
             P+ V  S           FD         +R   KP   TY+ L+   C      D +
Sbjct: 295 VVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAF 354

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           R   L+  M   G  PN +++  ++D    SG ++
Sbjct: 355 R---LLELMEAAGSPPNVVTYNSVMDGLCKSGKMD 386



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 82/144 (56%), Gaps = 4/144 (2%)

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + +++ GV+ D+ +Y++L+     AG    + E+  +++    +  +K DV TYST++ V
Sbjct: 288 EELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMR----RNGVKPDVVTYSTLINV 343

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
               + +Q A ++ E M +AG  PN +T++S+++    +G +++   ++E ML++ C P+
Sbjct: 344 LCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPD 403

Query: 433 SQCCNILLQACVEACQFDRAFRLF 456
               +I++    +A   D A +LF
Sbjct: 404 VVTYSIIMNGLSKAGMLDSAVKLF 427



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 13/241 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAI-- 278
           I +   ++   +  ++  ALR     ++ L  P ++  C TI  V G+C       A+  
Sbjct: 159 ITYGTLIQHLSRAGEIDEALRVM-IEQRSLELPTDVITCTTI--VGGLCKASRLDDALKF 215

Query: 279 YEDLRSQNVTLNIYVFNSLMN-VNAH-DLKFTLEVYKNMQ-KLGVMADMASYNILLKACC 335
            E++R   V  N   +++L++    H +L   +  ++  + + G   + A+Y   L A C
Sbjct: 216 MEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALC 275

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            AG    A++    V+ L   GV+  DV TYS ++  FA A  +  +L++ EDM   GV 
Sbjct: 276 KAGYLDRARK---SVEELRQSGVVP-DVVTYSMLINTFARAGQFDASLELLEDMRRNGVK 331

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +T+S+LIN        + A  L E M  AG  PN    N ++    ++ + D   R+
Sbjct: 332 PDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRV 391

Query: 456 F 456
           +
Sbjct: 392 Y 392



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 114/278 (41%), Gaps = 33/278 (11%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           GV+    +Y +++   C AG    A E+  E+      GV    +F Y+ I+     A  
Sbjct: 49  GVVYGETTYKLVVDGLCGAGMANQALELVRELS-----GVYTPTLFIYNGIITGLCRASR 103

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A KV E M+   + PN  T++ L+N    +   + A  +F+EM + GC+PN      
Sbjct: 104 VMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGT 163

Query: 439 LLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEH-----KDKQSI 490
           L+Q    A + D A R+    RS  L  T V       G   + S ++      ++ + +
Sbjct: 164 LIQHLSRAGEIDEALRVMIEQRSLELP-TDVITCTTIVGGLCKASRLDDALKFMEEMRQM 222

Query: 491 TNTPNFVPNS-------HYSSFDKRFSF----------KPTTTTYNILMKACCTDYY--R 531
              PN V  S        +   D+   F                Y   + A C   Y  R
Sbjct: 223 GVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDR 282

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +  + E+R  G+ P+ +++++LI+    +G  + +L+
Sbjct: 283 ARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLE 320



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 119/245 (48%), Gaps = 7/245 (2%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASK-KHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           ++ + N V  F +  +L   +R ++  K +   S         +D     G   ++R   
Sbjct: 228 EVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSV 287

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E+LR   V  ++  ++ L+N  A   +F  +LE+ ++M++ GV  D+ +Y+ L+   C  
Sbjct: 288 EELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKE 347

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
                 Q+ +  ++ +EA G    +V TY++++     +       +V E ML +  +P+
Sbjct: 348 RKF---QDAFRLLELMEAAGSPP-NVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPD 403

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +T+S ++N  + AG+++ A+ LFE +  +   P++   ++++ +   A + + A  ++ 
Sbjct: 404 VVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYH 463

Query: 458 SWTLS 462
              ++
Sbjct: 464 GMEVT 468


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 137/329 (41%), Gaps = 37/329 (11%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMN--VNAHDLKFTL 309
           +PN     T++      G+   +  +   +R + N   N+  FNS++N    A  ++   
Sbjct: 184 APNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGAR 243

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V+  M + G+  D+ SYN LL   C  G    +  ++ E+     +G++  DV T++++
Sbjct: 244 KVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQ---RGLVP-DVVTFTSL 299

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +     A   + A+ +   M   G+  N +T+++LI+     G ++ A+   EEM + G 
Sbjct: 300 IHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGI 359

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ--------VALGEDYDGNTDRISN 481
           +P+  C N L+    +  + D A  L R     + +        +  G    GN D    
Sbjct: 360 QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQ 419

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEM 539
           +  K  +                        P   TY+ L++  C +     A  L   M
Sbjct: 420 LNQKMLKK--------------------GVLPDAITYSSLIRGLCEEKRLNDACELFENM 459

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGAL 568
             +G+ P+  ++T LID     GNVE AL
Sbjct: 460 LQLGVQPDEFTYTTLIDGHCKEGNVEKAL 488



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 6/204 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++    ++I      G+  ++ A+   +R + + +N   F +L++       L   L  
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M+K G+   +  YN L+   C  G   LA+E+   ++ +EAK V K DV TYSTI+ 
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLAREL---IREMEAKRV-KPDVVTYSTIIS 406

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +        A ++ + ML  GV P+ IT+SSLI        +  A  LFE MLQ G +P
Sbjct: 407 GYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQP 466

Query: 432 NSQCCNILLQACVEACQFDRAFRL 455
           +      L+    +    ++A  L
Sbjct: 467 DEFTYTTLIDGHCKEGNVEKALSL 490



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 19/287 (6%)

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E++R   +  ++  +N+L+N       +    E+ + M+   V  D+ +Y+ ++   C  
Sbjct: 352 EEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKV 411

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           GN   A ++    + +  KGVL  D  TYS++++   + K    A ++ E+ML  GV P+
Sbjct: 412 GNLDSAFQLN---QKMLKKGVLP-DAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 467

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR-LF 456
             T+++LI+     G VE+A+ L +EM++ G  P+    ++L+    ++ +   A R LF
Sbjct: 468 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 527

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF------S 510
           + +   +  V     YD      S  E K   ++     F         DK +      +
Sbjct: 528 KLY--HEDPVPDNIKYDALMLCCSKAEFKSVVALLK--GFCMKGLMKEADKVYQSMLDRN 583

Query: 511 FKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
           +K   + Y+IL+   C      KAL    +M   G SPN  S   L+
Sbjct: 584 WKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLV 630



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 101/258 (39%), Gaps = 54/258 (20%)

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
           +M + GV  ++ +YNIL++A C  G     +E  G V  +   G    +  TY+T+V  F
Sbjct: 142 SMLRHGVAPNVYTYNILVRALCARGRL---EEAVGVVGDMRGAGCAP-NAVTYNTLVAAF 197

Query: 374 ADAKWWQMALKVKEDMLSAG-VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
             A     A +V   M   G   PN +T++S++N    AG +E A  +F+EM++ G  P+
Sbjct: 198 CRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPD 257

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
               N LL    +      +  +F   T                                
Sbjct: 258 VVSYNTLLSGYCKVGCLHESLAVFSEMT-------------------------------- 285

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHIS 550
                          +    P   T+  L+ A C   +  +  AL+ +MR  GL  N ++
Sbjct: 286 ---------------QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 330

Query: 551 WTILIDACGGSGNVEGAL 568
           +T LID     G ++ AL
Sbjct: 331 FTALIDGFCKKGFLDDAL 348



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 24/213 (11%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V  Y+ ++   +DA     A +    ML  GV PN  T++ L+ A    G +E+A+ +  
Sbjct: 118 VPAYNAVLLALSDASLPS-ARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVG 176

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFR---LFRSWTLSKTQVALGEDYDGNTDRI 479
           +M  AGC PN+   N L+ A   A + D A R   L R    +K  +           + 
Sbjct: 177 DMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKA 236

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCTD--YYRVKAL 535
             ME   K                 FD+  R    P   +YN L+   C     +   A+
Sbjct: 237 GRMEGARK----------------VFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAV 280

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            +EM   GL P+ +++T LI A   +GN+E A+
Sbjct: 281 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAV 313



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 112/257 (43%), Gaps = 36/257 (14%)

Query: 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247
           V  LD  F++ Q  + K           ++P A I + + +R   +++ L  A   ++  
Sbjct: 411 VGNLDSAFQLNQKMLKKG----------VLPDA-ITYSSLIRGLCEEKRLNDACELFENM 459

Query: 248 KKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN------ 299
            +    P+ +   T+ID  G C  G+  K+ ++++++  + V  ++  ++ L+N      
Sbjct: 460 LQLGVQPDEFTYTTLID--GHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSA 517

Query: 300 --VNAHDLKFTL----EVYKNMQKLGVM-----ADMASYNILLKACCLAGNTVLAQEIYG 348
               AH L F L     V  N++   +M     A+  S   LLK  C+ G    A ++Y 
Sbjct: 518 RTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQ 577

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            +         KLD   YS ++         + AL   + ML +G +PN+ +  SL+   
Sbjct: 578 SMLDRN----WKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGL 633

Query: 409 ANAGLVEQAMHLFEEML 425
              G+V +A +  +++L
Sbjct: 634 FEEGMVVEADNAIQDLL 650


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 7/221 (3%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +F   +   G++ +   A + ++   +    P+M+    IID     G    +  +   +
Sbjct: 286 MFIEALYSIGRREE---AEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLM 342

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
               V  N Y++  +M+  V +  L+  LE+Y+ + K G++    +YN ++ A C     
Sbjct: 343 DKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKM 402

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A E+  E++    K  L+  + TYS I+         + A  +  +M+  GV P+  T
Sbjct: 403 DEALELLREMQR--RKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFT 460

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           ++SLI   A AG V +AM L EEML+AG  P+      L+Q
Sbjct: 461 YTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQ 501



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 153/379 (40%), Gaps = 56/379 (14%)

Query: 234 KRDLVSALRAYDASKKH-------LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
           +RDL  A+  +++  +        + +P+      I+D     G+Y      YE + +  
Sbjct: 77  RRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASK 136

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
               +  +  L++    AH ++   +V++ M + G   D+ +Y+ L+     AG    A+
Sbjct: 137 CEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEAR 196

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           ++   V  + A+G     V  Y++IV         Q A+K  ++M    + P   T+S +
Sbjct: 197 KL---VDLMIARGPPPTAV-AYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFI 252

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
           +      G VE+A  + EEM    C P++    + ++A     + + A ++F      +T
Sbjct: 253 VTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVF------ET 306

Query: 465 QVALGEDYDGNTDRI---------------SNMEHKDKQSITNTPN----------FVPN 499
            V  G   D +T  I                 +   DK ++   PN          FV +
Sbjct: 307 MVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAV--KPNRYIYTMIMDGFVKS 364

Query: 500 SHYSSFDKRF------SFKPTTTTYNILMKACCTDYYRVKA--LMNEM--RTVGLSPNHI 549
           S      + +         P+T TYN ++ A C      +A  L+ EM  R   L P+ +
Sbjct: 365 SRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIV 424

Query: 550 SWTILIDACGGSGNVEGAL 568
           +++++I   G  G  E A 
Sbjct: 425 TYSMIIHGLGKVGMEERAF 443



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 7/172 (4%)

Query: 290 NIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  FN L+   A   D +    + + M+  G+ ++ A++ ++L A C A   +     Y
Sbjct: 28  NVSSFNILLRGFAARDDFEVVNALLREMKARGITSNGATHGVILSALC-ARRDLDKAVSY 86

Query: 348 GEVKHLEA----KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
              +  EA    + +   D  TY+ IV     A  +   L+  E M+++   P  +T++ 
Sbjct: 87  FNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTV 146

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           L++    A  VE+A  +FEEM++ G +P+    + L+    +A + D A +L
Sbjct: 147 LVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKL 198



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 41/184 (22%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V++ M + G   DM +Y I++   C  G+   A  +      L  K  +K + + Y+ I
Sbjct: 302 KVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVL----RLMDKAAVKPNRYIYTMI 357

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITW---------------------------- 401
           +  F  +   + AL++ + +L  G+ P+T+T+                            
Sbjct: 358 MDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKE 417

Query: 402 ---------SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
                    S +I+     G+ E+A  L  EM+  G  P+      L+Q    A +  RA
Sbjct: 418 ELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRA 477

Query: 453 FRLF 456
             L 
Sbjct: 478 MELL 481


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 107/216 (49%), Gaps = 10/216 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN      +ID  G+C   M S A  ++E +  + +  ++Y +N+L++   +   +    
Sbjct: 148 PNKVTFTILID--GLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQ 205

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +++  M + G   ++ SYNIL+   C +G    A+ +  E+ H      L  D+FTYST+
Sbjct: 206 KLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKS----LTPDIFTYSTL 261

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           ++ F      Q A ++ ++M S G+ PN IT+S +++     G +++A  L + M ++  
Sbjct: 262 MRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKI 321

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           EPN     IL++      + + A  LF +  +   Q
Sbjct: 322 EPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQ 357



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 134/321 (41%), Gaps = 46/321 (14%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G+C     M +  +++++       ++  +++++N      +    L++ K M++ G   
Sbjct: 19  GLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKP 78

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           ++ +YN ++ + C       A + + E+     K  +  DVFTYS+I+  F +      A
Sbjct: 79  NVVAYNTIIDSLCKDRLVTEAMDFFSEM----VKEGIPPDVFTYSSILHGFCNLGRVNEA 134

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
             + + M+   V PN +T++ LI+      ++ +A  +FE M + G EP+    N L+  
Sbjct: 135 TSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDG 194

Query: 443 CVEACQFDRAFRLF------------RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
                Q D A +LF            RS+ +           D     ++ M HK     
Sbjct: 195 YCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHK----- 249

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNH 548
                              S  P   TY+ LM+  C        + L+ EM + GL PN 
Sbjct: 250 -------------------SLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNL 290

Query: 549 ISWTILIDACGGSGNVEGALQ 569
           I+++I++D     G+++ A +
Sbjct: 291 ITYSIVLDGLCKHGHLDEAFE 311



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 119/251 (47%), Gaps = 13/251 (5%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A + ++   +   +PN+     +I+     G   +++ +  ++  +++T +I+ +++LM 
Sbjct: 204 AQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMR 263

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                   +   E+ K M   G++ ++ +Y+I+L   C  G+   A E+   ++  E+K 
Sbjct: 264 GFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQ--ESK- 320

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            ++ ++F Y+ +++        + A ++  ++   G+ P  +T++ +I+     GL  +A
Sbjct: 321 -IEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEA 379

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
             LF EM   GC PNS   N+++Q  +       A RL          V  G   D +T 
Sbjct: 380 CELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEM------VGKGFSADSSTF 433

Query: 478 R-ISNMEHKDK 487
           R +S++E  D+
Sbjct: 434 RMLSDLESSDE 444



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 92/236 (38%), Gaps = 29/236 (12%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
           L+  + T++T++           A+K+ ++M+  G  P+ IT+S++IN     G    A+
Sbjct: 6   LQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMAL 65

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDG- 474
            L ++M + GC+PN    N ++ +  +      A   F       +            G 
Sbjct: 66  QLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGF 125

Query: 475 -NTDRISNMEHKDKQSITNTPNFVPNSHYSSF------DKRF--------------SFKP 513
            N  R++      KQ +    N +PN    +        KR                 +P
Sbjct: 126 CNLGRVNEATSLFKQMVER--NVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEP 183

Query: 514 TTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              TYN L+   C  +     + L N M   G +PN  S+ ILI+    SG ++ A
Sbjct: 184 DVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEA 239


>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 942

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 135/338 (39%), Gaps = 55/338 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           IL+ N +  F    ++  A++     +K    P       II+     GD  +S  +++ 
Sbjct: 556 ILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDM 615

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R       ++ FN+L+N  V    ++  +E+   M   GV A+  +Y  +++     G+
Sbjct: 616 MRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGD 675

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A E +     L+ +G L++D+FTY  ++K    +   Q AL V ++M +  +  N+ 
Sbjct: 676 TGKAFEYF---TRLQNEG-LEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSF 731

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            ++ LI+  A  G V +A  L ++M + G +P+       + AC +A   +RA       
Sbjct: 732 VYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRA------- 784

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                           T  I  ME                            KP   TY 
Sbjct: 785 ----------------TQTIEEME------------------------ALGVKPNIKTYT 804

Query: 520 ILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
            L+K         KAL    EM+ VGL P+   +  L+
Sbjct: 805 TLIKGWARASLPEKALSCYEEMKAVGLKPDKAVYHCLL 842



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 114/280 (40%), Gaps = 35/280 (12%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   +  F K  D+  +L  +D  ++    P ++    +I+         K+  I +++ 
Sbjct: 593 FMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMT 652

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              V+ N + +  +M    +  D     E +  +Q  G+  D+ +Y  LLKACC +G   
Sbjct: 653 LAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQ 712

Query: 342 LAQEIYGE--------------------------------VKHLEAKGVLKLDVFTYSTI 369
            A  +  E                                ++ ++ +GV K D+ TY++ 
Sbjct: 713 SALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV-KPDIHTYTSF 771

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +   + A     A +  E+M + GV PN  T+++LI   A A L E+A+  +EEM   G 
Sbjct: 772 ISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAVGL 831

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
           +P+    + LL + +       A+      T+ K  V  G
Sbjct: 832 KPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAG 871



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 147/386 (38%), Gaps = 63/386 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDYMKSRAIYE 280
           + +   V  F K  +  +A   +D +K+   + N  I   II   C  C +  ++ A+  
Sbjct: 381 VTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQTC-NMERAEALVR 439

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++  + +   I +++++M+      D K  L V+K +++ G    + +Y  L+      G
Sbjct: 440 EMEEEGIDAPIAIYHTMMDGYTMVADEKKGLIVFKRLKECGFTPTVVTYGCLINLYTKVG 499

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A E+   +K    K  LK    TYS ++  F   K W  A  V EDM+  G+ P+ 
Sbjct: 500 KISKALEVSRVMKEEGVKHNLK----TYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDV 555

Query: 399 I-----------------------------------TWSSLINACANAGLVEQAMHLFEE 423
           I                                   T+  +IN  A +G + +++ +F+ 
Sbjct: 556 ILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDM 615

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M + GC P     N L+   VE  Q ++A  +    TL+                +S  E
Sbjct: 616 MRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAG---------------VSANE 660

Query: 484 H---KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNE 538
           H   K  Q   +  +      Y +  +    +    TY  L+KACC       AL    E
Sbjct: 661 HTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKE 720

Query: 539 MRTVGLSPNHISWTILIDACGGSGNV 564
           M    +  N   + ILID     G+V
Sbjct: 721 MSARNIPRNSFVYNILIDGWARRGDV 746



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 55/298 (18%), Positives = 116/298 (38%), Gaps = 33/298 (11%)

Query: 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           +++ N  + +  +  ++ + K         + +++K     G+   A+E +   + + A+
Sbjct: 287 ILDTNGDNWQAVISAFEKINK----PSRTEFGLMVKFYGRRGDMHRARETF---ERMRAR 339

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G+       Y++++  +A  +  + AL     M   G+  + +T+S ++   + AG  E 
Sbjct: 340 GITPTSRI-YTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGNAEA 398

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY---D 473
           A H F+E  +     N+     ++ A  + C  +RA  L R          +   +   D
Sbjct: 399 ADHWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMD 458

Query: 474 GNT----DRISNMEHKDKQSITNTPNFVPNS----------------HYSSFDKRFSFKP 513
           G T    ++   +  K  +    TP  V                     S   K    K 
Sbjct: 459 GYTMVADEKKGLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKH 518

Query: 514 TTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              TY++++       D+    A+  +M   G+ P+ I +  +I A  G GN++ A+Q
Sbjct: 519 NLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQ 576


>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
 gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
          Length = 795

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 163/404 (40%), Gaps = 71/404 (17%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           FG  +D   ALR +    +   +PN     T++D     GD+ ++  +++D+ ++ +  +
Sbjct: 290 FGDYKD---ALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKS 346

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           IY FN+++N      ++    E +K M++LG   D  +Y  L    C  GN    +E + 
Sbjct: 347 IYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNV---EEAFK 403

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
             + +E + +        S IV +F   K  ++ + +  +M + G++PN +T+ +LI   
Sbjct: 404 IKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKL-IDLLAEMDTRGLSPNVVTYGALIAGW 462

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCC----------------NILLQA---------- 442
            + G +++A   + EM+  G  PN   C                N+LLQ           
Sbjct: 463 CDQGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVDFDLVLDH 522

Query: 443 -CVEACQFDRAFRLFRSWTLSKT--QVALGEDYDGNTDRISNMEHKDKQSITNTPN--FV 497
            C+E  Q +   R    W ++ T  + A+      N      M    K    N     F+
Sbjct: 523 RCLEDFQ-NADIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFL 581

Query: 498 PNSHYSSFDKRFSF----------------------------KPTTTTYNILMKACCTDY 529
             SH S     F++                             P  TTYN L+   C   
Sbjct: 582 GLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSG 641

Query: 530 Y--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           Y  R + L +++   GL PN +++ ILID    SG+   AL  R
Sbjct: 642 YLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLR 685



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 137/314 (43%), Gaps = 31/314 (9%)

Query: 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----NAHDLKFTLEVYKNMQKLGVM 321
           G  GD ++ R   +++    + +N++V NSL+N        H+ +  L     M+KL + 
Sbjct: 186 GKMGDAIRVR---DEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMC---MRKLDLK 239

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            D  SY  L+   C  G   L+ + +     +  KG+ +  V TY+T++K       ++ 
Sbjct: 240 PDSYSYCTLVDGYCRDG---LSSKAFNVCDQMLRKGI-EPTVVTYNTLLKGLCRFGDYKD 295

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           AL++   ML  GVTPN + + +L++     G   +A+ L++++L  G   +    N ++ 
Sbjct: 296 ALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMIN 355

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR-ISNMEHKDKQSITNTPNFVPNS 500
              +  + D A   F      K    LG   DG T R +S+   K    + N        
Sbjct: 356 GLCKMGEMDGAKETF------KRMEELGCKPDGITYRTLSDGYCK----VGNVEEAFKIK 405

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDAC 558
                ++ F   P+   YN L+    T     ++  L+ EM T GLSPN +++  LI   
Sbjct: 406 EKMEKEEIF---PSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGW 462

Query: 559 GGSGNVEGALQCRF 572
              G ++ A    F
Sbjct: 463 CDQGRLDKAFSAYF 476



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 157/355 (44%), Gaps = 47/355 (13%)

Query: 112 SLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEV 171
           S+EM  S IV      +I  ++ +L +++  G++P  +  G+   L+   C    D G +
Sbjct: 416 SIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGA---LIAGWC----DQGRL 468

Query: 172 E-MFVGLMEVLEEFRLP--------------VKELDEEFRIVQLCVNKPDVNLAIRYACI 216
           +  F    E++ +   P              +  +DE   ++Q  V   D +L + + C+
Sbjct: 469 DKAFSAYFEMIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMV---DFDLVLDHRCL 525

Query: 217 --VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDY 272
                ADI          +K D        D S    S PN  +    I + G+C  G  
Sbjct: 526 EDFQNADI----------RKLDCWKIADTLDESAIKFSLPNNVVYN--IAMAGLCKSGKV 573

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
             +R  +  L   + T + + + +L++    A  +     +   M   G++ ++ +YN L
Sbjct: 574 NDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNAL 633

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           L   C +G    A+ ++ ++ HL  KG++  +V TY+ ++  +  +   + AL ++  ML
Sbjct: 634 LNGLCKSGYLDRARRLFDKL-HL--KGLIP-NVVTYNILIDGYCKSGSPREALDLRGKML 689

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             G++P+ IT+SSLIN       VE+AM L  EM  +  +      + L++ C++
Sbjct: 690 KEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNVDQTIATFSKLVEGCIQ 744



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 109/262 (41%), Gaps = 40/262 (15%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K+ +  SA+  YD  ++    P+++ C  +++     G   ++     ++      LN  
Sbjct: 43  KRGESYSAVLVYDQMRRLDIVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAV 102

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +NSL++  V+  D++    V K M + GVM +  +  +L+K  C       A+++   +
Sbjct: 103 SYNSLVDGYVSLGDIEGAKGVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKV---L 159

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CA 409
           + +E +  + +D + Y  ++  +        A++V+++ML  G+  N    +SLIN  C 
Sbjct: 160 REMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCK 219

Query: 410 NA----------------------------------GLVEQAMHLFEEMLQAGCEPNSQC 435
           N                                   GL  +A ++ ++ML+ G EP    
Sbjct: 220 NGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVT 279

Query: 436 CNILLQACVEACQFDRAFRLFR 457
            N LL+       +  A RL+ 
Sbjct: 280 YNTLLKGLCRFGDYKDALRLWH 301



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 100/214 (46%), Gaps = 11/214 (5%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P+ +   T+I      G   ++  + +++ ++ +  NI  +N+L+N    +  L     
Sbjct: 589 TPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARR 648

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  +   G++ ++ +YNIL+   C +G+   A ++ G++     K  +   + TYS+++
Sbjct: 649 LFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKM----LKEGISPSIITYSSLI 704

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F      + A+K+  +M ++ V     T+S L+  C   G V++ M     M+   C 
Sbjct: 705 NGFCKQSDVEEAMKLLNEMKASNVDQTIATFSKLVEGCIQHGDVKK-MSKLHNMMHMAC- 762

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
           P++    I     +E  +   A  +  S+T+S+ 
Sbjct: 763 PSA---GITSHKQMELSELSNAKEMLDSYTISEA 793


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 145/328 (44%), Gaps = 65/328 (19%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED--LRSQNVTLNIYVFNSLMN 299
           RA DA +  L+  +    R +  V G+ G   +  +I E+  LR       + VFN++M 
Sbjct: 172 RALDAFE-WLARSSAPASRAVAVVLGVLG-RARQDSIAEEVFLRFAGEGATVQVFNAMMG 229

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILL----KACCLAGNTVLAQEIYGEVKHL 353
           V A   +F    ++   M   G+  D+ S+N L+    K+ CLA    L  ++  EV+  
Sbjct: 230 VYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVAL--DLLFEVR-- 285

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
             +  L+ DV TY+T++   + +   + A+ V EDM+++   P+  T++++++     G 
Sbjct: 286 --QSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGK 343

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
            E+A  LF E+++ G  P++   N LL A  +                           +
Sbjct: 344 AEEAERLFRELVEKGFMPDAITYNSLLYAFAK---------------------------E 376

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN--ILMKACCTDYYR 531
           GN D++   EH  +Q +                 +  FK    TYN  I M         
Sbjct: 377 GNVDKV---EHTCEQLV-----------------KAGFKKNEITYNTMIHMYGKMGRLDL 416

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACG 559
              L +EMR +G +P+ +++T++ID+ G
Sbjct: 417 AVGLYDEMRAMGCTPDAVTYTVMIDSLG 444



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 133/298 (44%), Gaps = 16/298 (5%)

Query: 262  IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF-TLEVY-KNMQKLG 319
            ++D     GD  +   IY  +++     N++++ S++++  H  +F  +E+    M+  G
Sbjct: 856  LLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAG 915

Query: 320  VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
               D+A  N LL     AGN     ++Y  +  LEA   L+ D  TY+T++ ++  +   
Sbjct: 916  FKPDLAILNALLNMYTAAGNFDRTTQVYRSI--LEAG--LEPDEDTYNTLIVMYCRSFRP 971

Query: 380  QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
            +    +  +M   G+TP   ++ SL+ A A A L EQA  +FEEM     + N    +++
Sbjct: 972  EEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMM 1031

Query: 440  LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
            ++    A    +A  L         +  +   +   T   +  + ++ +++ N      N
Sbjct: 1032 MKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLN------N 1085

Query: 500  SHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
               SS +   S  P +T ++  +K    DY      + EM+  G+ P+H  WT  I A
Sbjct: 1086 LKSSSLE--VSTLPYSTVFDAYLKN--GDYNHGTTKLLEMKRDGVEPDHQVWTCFIRA 1139



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 12/209 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----NAHDLKFT 308
           P+++    ++ V G CG   ++  ++ +L  +    +   +NSL+       N   ++ T
Sbjct: 326 PDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHT 385

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            E    + K G   +  +YN ++      G   LA  +Y E++   A G    D  TY+ 
Sbjct: 386 CE---QLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMR---AMGCTP-DAVTYTV 438

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++           A KV EDM  AG+ P  I +S+LI A A  G    A + F+ M+ +G
Sbjct: 439 MIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASG 498

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +P+     ++L     +   ++   L+R
Sbjct: 499 VKPDRLAYLVMLDVFARSGDTEKMLCLYR 527



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 129/316 (40%), Gaps = 26/316 (8%)

Query: 255  NMYICRTII-DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
            N+  CR II +  G    + ++  + + LR Q   ++  ++N+L++  A    +     V
Sbjct: 744  NILSCRVIIIEAYGKIKLWQQAEILVKGLR-QASGIDRRIWNALIHAYAESGLYEKARAV 802

Query: 312  YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + NM K G +  + S N +++A  + G      E+Y  V+ L+     K+   T   ++ 
Sbjct: 803  FDNMIKTGPLPTVDSVNGMMRALIVDGRL---DELYVVVEELQDMN-FKISKSTVLLLLD 858

Query: 372  VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
             FA A      +K+   M +AG  PN   + S+I+   +         +  EM  AG +P
Sbjct: 859  AFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKP 918

Query: 432  NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
            +    N LL     A  FDR  +++RS      +  L  D D     I          + 
Sbjct: 919  DLAILNALLNMYTAAGNFDRTTQVYRSI----LEAGLEPDEDTYNTLI----------VM 964

Query: 492  NTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
               +F P   ++  ++  +    P   +Y  L+ A      R +A  +  EMR+     N
Sbjct: 965  YCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLN 1024

Query: 548  HISWTILIDACGGSGN 563
               + +++     +GN
Sbjct: 1025 RSIYHMMMKIYRNAGN 1040



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 118/299 (39%), Gaps = 37/299 (12%)

Query: 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           QN  L  Y+   L  + A       +V+ +MQ +G+ A  + Y  ++   C  G    A 
Sbjct: 673 QNCNLYEYLITCL--IEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAH 730

Query: 345 EIYGEVKHLEAKGVLKLDVFTYST-IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            +  +      +  + L++ +    I++ +   K WQ A  + + +  A      I W++
Sbjct: 731 RLMDDA----LQSGIPLNILSCRVIIIEAYGKIKLWQQAEILVKGLRQASGIDRRI-WNA 785

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR-----S 458
           LI+A A +GL E+A  +F+ M++ G  P     N +++A +   + D  + +       +
Sbjct: 786 LIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMN 845

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH-YSSF------DKRF-- 509
           + +SK+ V L  D       +   E     +      ++PN H Y S         RF  
Sbjct: 846 FKISKSTVLLLLDAFAKAGDV--FEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRD 903

Query: 510 -----------SFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
                       FKP     N L  M     ++ R   +   +   GL P+  ++  LI
Sbjct: 904 VELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLI 962


>gi|414888268|tpg|DAA64282.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 868

 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 153/357 (42%), Gaps = 41/357 (11%)

Query: 224 FCNFVREFGKKRDLVSALRAYD-ASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYE 280
           F    REF ++ D   +LR +    ++    P+ +I   +I V G  G  +  K   ++ 
Sbjct: 106 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFH 165

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDL--KFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           DL +++ T   Y   SL+   A +   +    +   M+  GV    A+YN +L AC  A 
Sbjct: 166 DLPAESRTALSYT--SLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARAT 223

Query: 339 NTVLAQE----IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           +  +  +    ++ E++H +A   ++ D+ TY+T++   A       +  +   ML AGV
Sbjct: 224 DPPVPFDMLLGLFAEMRH-DASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGV 282

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           +P+T+++  +++A A+AG + +A  LF EM   G   ++     L++A         A  
Sbjct: 283 SPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVA 342

Query: 455 LFRSW-------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
           + R         T +  +V L  D  G   R   +    ++  T  P             
Sbjct: 343 VLRQMQADGCAPTAATYRVLL--DLYGRQGRFDGVRQLFREMRTAVP------------- 387

Query: 508 RFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
                P T TYN+L +       +  V  L ++M   G+ P+ ++   ++ ACG  G
Sbjct: 388 -----PDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGG 439



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 7/206 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLE 310
           SP+    R I+D     G+  ++  ++ ++ +   T +   +  LM  +         + 
Sbjct: 283 SPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVA 342

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + MQ  G     A+Y +LL      G     ++++ E++       +  D  TY+ + 
Sbjct: 343 VLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMR-----TAVPPDTATYNVLF 397

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +VF D  +++  +++  DML  GV P+ +T  +++ AC + GL   A  + E M + G  
Sbjct: 398 RVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMV 457

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
           P +     L++A   A  ++ A+  F
Sbjct: 458 PTADAYTGLVEALGHAAMYEEAYVAF 483



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 67/348 (19%), Positives = 128/348 (36%), Gaps = 58/348 (16%)

Query: 99  VSEGNVSKFASMLSLEMVASG-----------IVKSIREGRIDCVVGVLKKLNELGVAPL 147
            S GN+S+ A + S EM A+G           +    R G     V VL+++   G AP 
Sbjct: 297 ASAGNLSRAAELFS-EMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPT 355

Query: 148 ELFDGSGFKLLKNECQRLLD-SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD 206
                + +++L       LD  G    F G+ ++  E R  V                PD
Sbjct: 356 ----AATYRVL-------LDLYGRQGRFDGVRQLFREMRTAVP---------------PD 389

Query: 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266
                         ++LF    R FG        +  +    K    P+M  C  ++  C
Sbjct: 390 TATY----------NVLF----RVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAAC 435

Query: 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADM 324
           G  G +  +R + E +  + +      +  L+    H   +      +  M ++G +  +
Sbjct: 436 GHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTL 495

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            +YN L  A    G   L QE       +     ++    ++  +++ +        A+K
Sbjct: 496 ETYNALAFAYARGG---LFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVK 552

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
              +M  +   P+  +   ++NA   AG+++++   FEE+  +   P+
Sbjct: 553 AYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTMPS 600


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 149/354 (42%), Gaps = 49/354 (13%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P++  C  ++       +   S  +++ +    VT ++Y+F++++N       +   +E+
Sbjct: 160 PSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIEL 219

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-----------GVLK 360
           ++ M+K+GV  ++ +YN ++   C  G    A +   +++    K           G++K
Sbjct: 220 FRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVK 279

Query: 361 LDVF--------------------TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
           L+ F                     Y+T++  +        AL++++DM+S G++PN++T
Sbjct: 280 LERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVT 339

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
            +SLI     +  +E A HL EEML  G   N      ++      C+FD A        
Sbjct: 340 CNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEML 399

Query: 461 LSKTQVALGEDYDG-NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
           L   +       DG  T  +S +    KQS            Y   +K F+    T T N
Sbjct: 400 LRNFK-----PNDGLLTLLVSGLCQNGKQSEA------IELWYRLLEKGFA--ANTVTSN 446

Query: 520 ILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
            L+   C    + +A  L+ EM   GL  + IS+  LI AC   G VE   + +
Sbjct: 447 ALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLK 500



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 135/312 (43%), Gaps = 42/312 (13%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           T+I  C   G   +   + E++  + +  ++Y +N L++   N   ++    ++   +K 
Sbjct: 482 TLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKN 541

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  +Y I++   C A      ++++ E+  ++    ++ +   Y T+++ + +   
Sbjct: 542 GNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMK----IEQNAVVYGTLIRAYCENGN 597

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            + A ++++DM S G+   + T+SSLI+  +N GLV+ A  L +EM + G  PN  C   
Sbjct: 598 MREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTA 657

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           L+    +  Q  +   + +  ++                   N  H +K + T     + 
Sbjct: 658 LIGGYCKLGQMHKVDSILQEMSI-------------------NNVHPNKITYT----IMI 694

Query: 499 NSHYSSFDKRFSFK-----------PTTTTYNILMKACCTDYYRVKALM--NEMRTVGLS 545
           N H    + + + K           P   TYN L    C +    +AL   + M T G+S
Sbjct: 695 NGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGIS 754

Query: 546 PNHISWTILIDA 557
            + I++T LID 
Sbjct: 755 LDDITYTTLIDG 766



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 137/312 (43%), Gaps = 28/312 (8%)

Query: 265 VCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV 320
           V G+C +  +S AI  +  L  +    N    N+L++    A   +   ++ K M + G+
Sbjct: 414 VSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGL 473

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
           + D  SYN L+ ACC  G     +E +   + +  +G+ + D++TY+ ++    +    +
Sbjct: 474 VLDSISYNTLILACCKEGK---VEEGFKLKEEMVRRGI-QPDMYTYNMLLHGLCNMGKIE 529

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A  +  +    G  P+  T+  +I+    A  VE+   LF+EM+    E N+     L+
Sbjct: 530 EAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLI 589

Query: 441 QACVEACQFDRAFRL---FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
           +A  E      AFRL    RS  + +T       Y      +SN+       + ++ N +
Sbjct: 590 RAYCENGNMREAFRLRDDMRSRGIPQTSAT----YSSLIHGLSNI------GLVDSANQL 639

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILI 555
            +       ++    P    Y  L+   C     ++V +++ EM    + PN I++TI+I
Sbjct: 640 LDEM-----RKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMI 694

Query: 556 DACGGSGNVEGA 567
           +     GN++ A
Sbjct: 695 NGHCKLGNMKAA 706



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 149/369 (40%), Gaps = 70/369 (18%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           +PN  +  T+ID  G C  G+   +  I +D+ S  ++ N    NSL+     ++ ++  
Sbjct: 299 APNNVVYNTLID--GYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHA 356

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGN-----------------------TVLAQE 345
             + + M   G + +  ++  ++   CL                          T+L   
Sbjct: 357 EHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSG 416

Query: 346 IYGEVKHLEA---------KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           +    K  EA         KG    +  T + ++    +A   + A K+ ++ML  G+  
Sbjct: 417 LCQNGKQSEAIELWYRLLEKG-FAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVL 475

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           ++I++++LI AC   G VE+   L EEM++ G +P+    N+LL       + + A  L 
Sbjct: 476 DSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGL- 534

Query: 457 RSWTLSKTQVALGEDY------DG--NTDRISNMEHKDKQSIT-----NTPNF--VPNSH 501
             W   K      + Y      DG    +R+   E   ++ +T     N   +  +  ++
Sbjct: 535 --WHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAY 592

Query: 502 YSSFDKRFSFK-----------PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNH 548
             + + R +F+            T+ TY+ L+           A  L++EMR  GLSPN 
Sbjct: 593 CENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNV 652

Query: 549 ISWTILIDA 557
           + +T LI  
Sbjct: 653 VCYTALIGG 661



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 40/210 (19%), Positives = 89/210 (42%), Gaps = 6/210 (2%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--L 305
           KK+ + P+ Y    +ID         +   +++++ +  +  N  V+ +L+     +  +
Sbjct: 539 KKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNM 598

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           +    +  +M+  G+    A+Y+ L+      G    A ++  E++    K  L  +V  
Sbjct: 599 REAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMR----KEGLSPNVVC 654

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+ ++  +           + ++M    V PN IT++ +IN     G ++ A  L  EM 
Sbjct: 655 YTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMA 714

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           Q G  P++   N L     +  + + A ++
Sbjct: 715 QKGIVPDAVTYNALTNGFCKEGKMEEALKV 744



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 34/188 (18%), Positives = 81/188 (43%), Gaps = 6/188 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +++   +R + +  ++  A R  D  +            ++I      G    +  + ++
Sbjct: 583 VVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDE 642

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R + ++ N+  + +L+        +     + + M    V  +  +Y I++   C  GN
Sbjct: 643 MRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGN 702

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++  E+     KG++  D  TY+ +   F      + ALKV + M + G++ + I
Sbjct: 703 MKAAAKLLNEMAQ---KGIVP-DAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDI 758

Query: 400 TWSSLINA 407
           T+++LI+ 
Sbjct: 759 TYTTLIDG 766



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 16/173 (9%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMK 274
           +P+    + + +        + SA +  D  +K   SPN+ +C T + + G C  G   K
Sbjct: 613 IPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNV-VCYTAL-IGGYCKLGQMHK 670

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLK 332
             +I +++   NV  N   +  ++N +    ++K   ++   M + G++ D  +YN L  
Sbjct: 671 VDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTN 730

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
             C  G    A     +V  L + G + LD  TY+T++        W   L V
Sbjct: 731 GFCKEGKMEEAL----KVCDLMSTGGISLDDITYTTLI------DGWHKPLTV 773


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 130/289 (44%), Gaps = 20/289 (6%)

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           +L   NV +   + +S+  V   +  F L  +  M   G+  D+ +Y+ L+   C+ G  
Sbjct: 219 NLVQPNVVMYNTIIDSMCKVKLVNEAFDL--FSEMISKGISPDVVTYSALISGFCILGKL 276

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A +++ ++  LE    +K DV+T++ +V  F      +    V + M+  G+ PN +T
Sbjct: 277 NDAIDLFNKMI-LEN---IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVT 332

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++SL++       V +A  +F  M Q G  P+ Q  +I++    +  +FD A  LF+   
Sbjct: 333 YNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMH 392

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
             K  +     Y    D +S         I+     V   H    D+     PT  TYN 
Sbjct: 393 -RKNIIPDVVTYSSLIDGLSK-----SGRISYALQLVDQMH----DR--GVPPTIRTYNS 440

Query: 521 LMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           ++ A C  +   +  AL+ +++  G+ PN  +++ILI     SG +E A
Sbjct: 441 ILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDA 489



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 105/219 (47%), Gaps = 9/219 (4%)

Query: 242 RAYDASKKHLS---SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
            A+D   + +S   SP++     +I    I G    +  ++  +  +N+  ++Y FN L+
Sbjct: 243 EAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILV 302

Query: 299 NVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           N    D  +K    V+  M K G+  +  +YN L+   CL      A+ I+  +    A+
Sbjct: 303 NAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTM----AQ 358

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G +  D+ +YS ++  F   K +  A+ + ++M    + P+ +T+SSLI+  + +G +  
Sbjct: 359 GGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISY 418

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           A+ L ++M   G  P  +  N +L A  +  Q D+A  L
Sbjct: 419 ALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIAL 457



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 120/289 (41%), Gaps = 29/289 (10%)

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           M+ R I  +L + N+ +N +    L       + F   V+  + K+G + D  ++  L+K
Sbjct: 111 MEFRGIKPNLVNCNILINCFCQLGL-------IPFAFSVFAKILKMGYVPDTITFTTLIK 163

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             CL G    A   + +V  L        D  +Y T++         + AL + + +   
Sbjct: 164 GLCLKGQIQQAFLFHDKVVALG----FHFDQISYGTLIHGLCKVGETRAALDLLQRVDGN 219

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            V PN + ++++I++     LV +A  LF EM+  G  P+    + L+       + + A
Sbjct: 220 LVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDA 279

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFS 510
             LF    L   +  +   Y  N   + N   KD +              + FD   +  
Sbjct: 280 IDLFNKMILENIKPDV---YTFNI--LVNAFCKDGKM---------KEGKTVFDMMMKQG 325

Query: 511 FKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
            KP   TYN LM   C   +  + K++ N M   G++P+  S++I+I+ 
Sbjct: 326 IKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMING 374



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 100/231 (43%), Gaps = 8/231 (3%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           V  F K   +      +D   K    PN     +++D   +  +  K+++I+  +    V
Sbjct: 302 VNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGV 361

Query: 288 TLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             +I  ++ ++N      KF   + ++K M +  ++ D+ +Y+ L+     +G    A +
Sbjct: 362 NPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQ 421

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +   V  +  +GV    + TY++I+           A+ +   +   G+ PN  T+S LI
Sbjct: 422 L---VDQMHDRGVPP-TIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILI 477

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFRL 455
                +G +E A  +FE +L  G   N     I++Q  CVE   F+ A  L
Sbjct: 478 KGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGL-FNEALAL 527



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 42/221 (19%)

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
           F ++ I+     +K +   L + + M   G+ PN +  + LIN     GL+  A  +F +
Sbjct: 86  FEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAK 145

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD---------- 473
           +L+ G  P++     L++      Q  +AF LF         VALG  +D          
Sbjct: 146 ILKMGYVPDTITFTTLIKGLCLKGQIQQAF-LFHDKV-----VALGFHFDQISYGTLIHG 199

Query: 474 ----GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
               G T    ++  +   ++                     +P    YN ++ + C   
Sbjct: 200 LCKVGETRAALDLLQRVDGNLV--------------------QPNVVMYNTIIDSMCKVK 239

Query: 530 YRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
              +A  L +EM + G+SP+ ++++ LI      G +  A+
Sbjct: 240 LVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAI 280


>gi|299117464|emb|CBN73967.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 731

 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 122/287 (42%), Gaps = 54/287 (18%)

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA--------------QEIYGEVK 351
           K  L + K+M + GV  D+ +Y+  ++AC  AG T  A              +E  G+ +
Sbjct: 179 KEALALLKDMPRQGVRPDIHTYSAAMRACRAAGRTGEALSLLETMRRSARGERERGGDAE 238

Query: 352 HLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
             EA    L+ D F ++  +   A  +  + A  +   M S GV+P+ ++++S+INA   
Sbjct: 239 SGEANAASLRPDAFCFNICIDACAKGRLHERAKALLGVMRSDGVSPDVVSFNSVINALGM 298

Query: 411 AGLVEQAMHLFEEM-LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
           AGL ++A+ + EEM +  G  PNS      + AC  + Q DRA  L +   L+  +V   
Sbjct: 299 AGLWKEALGVMEEMVMDGGVTPNSVTYASAINACGNSRQLDRALGLLKEARLAGIEVGAS 358

Query: 470 E--------DYDGNTDR----ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
                     + G+ D     +  ME +           VP               T  T
Sbjct: 359 AYNAAIAACGHAGSADEALPLLKEMEER----------RVPR--------------TVIT 394

Query: 518 YNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSG 562
           Y+ L+  C       +A  L  +M + G+ PN I++  LI A  G G
Sbjct: 395 YSSLIDVCGKGGLPDEALNLFQKMISEGILPNAITYNALIHASAGGG 441



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 152/380 (40%), Gaps = 88/380 (23%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDL-RSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           SP++    ++I+  G+ G + ++  + E++     VT N   + S +N   N+  L   L
Sbjct: 283 SPDVVSFNSVINALGMAGLWKEALGVMEEMVMDGGVTPNSVTYASAINACGNSRQLDRAL 342

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            + K  +  G+    ++YN  + AC  AG+   A E    +K +E + V +  V TYS++
Sbjct: 343 GLLKEARLAGIEVGASAYNAAIAACGHAGS---ADEALPLLKEMEERRVPRT-VITYSSL 398

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV--------------- 414
           + V         AL + + M+S G+ PN IT+++LI+A A  GL                
Sbjct: 399 IDVCGKGGLPDEALNLFQKMISEGILPNAITYNALIHASAGGGLKSGDGTVSSPVSGGRG 458

Query: 415 ------------------------------------EQAMHLFEEMLQAGCEPNSQCCNI 438
                                               E+ M L EEM +AG +P+    N+
Sbjct: 459 RIGASGGGEDDPRDEGGEVLGAEPAGGKGLGGIRRWERVMPLVEEMQKAGYQPDLLSFNL 518

Query: 439 LLQACVEACQFDRAFRLF---RSWTLSKTQVALGE-----DYDGNTDRISNMEHKDKQSI 490
            L AC      +R  RL    R   L  T  +        +  G  D +  +  + K   
Sbjct: 519 ALSACARRGDANRTLRLLGDMRRADLLPTTYSFSSAVKSCERAGKADEVLALLGRMKSGG 578

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNH 548
            +                     T  T+N  + AC  D  R  +L  ++EM+  G+SP+ 
Sbjct: 579 VSR--------------------TLITFNSALLACAKDGRREDSLRILSEMKKEGVSPDG 618

Query: 549 ISWTILIDACGGSGNVEGAL 568
            S+ + + ACG +G+  GAL
Sbjct: 619 KSFRLAMQACGRAGDPAGAL 638



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 136/323 (42%), Gaps = 17/323 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P+ +     ID C     + +++A+   +RS  V+ ++  FNS++N    A   K  L V
Sbjct: 249 PDAFCFNICIDACAKGRLHERAKALLGVMRSDGVSPDVVSFNSVINALGMAGLWKEALGV 308

Query: 312 YKNM-QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            + M    GV  +  +Y   + AC   GN+       G +K     G+ ++    Y+  +
Sbjct: 309 MEEMVMDGGVTPNSVTYASAINAC---GNSRQLDRALGLLKEARLAGI-EVGASAYNAAI 364

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A     AL + ++M    V    IT+SSLI+ C   GL ++A++LF++M+  G  
Sbjct: 365 AACGHAGSADEALPLLKEMEERRVPRTVITYSSLIDVCGKGGLPDEALNLFQKMISEGIL 424

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD------RISNMEH 484
           PN+   N L+ A   A    ++     S  +S  +  +G    G  D       +   E 
Sbjct: 425 PNAITYNALIHA--SAGGGLKSGDGTVSSPVSGGRGRIGASGGGEDDPRDEGGEVLGAEP 482

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTV 542
              + +     +          ++  ++P   ++N+ + AC    D  R   L+ +MR  
Sbjct: 483 AGGKGLGGIRRWERVMPLVEEMQKAGYQPDLLSFNLALSACARRGDANRTLRLLGDMRRA 542

Query: 543 GLSPNHISWTILIDACGGSGNVE 565
            L P   S++  + +C  +G  +
Sbjct: 543 DLLPTTYSFSSAVKSCERAGKAD 565



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 92/199 (46%), Gaps = 6/199 (3%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           + E+++      ++  FN  ++  A   D   TL +  +M++  ++    S++  +K+C 
Sbjct: 500 LVEEMQKAGYQPDLLSFNLALSACARRGDANRTLRLLGDMRRADLLPTTYSFSSAVKSCE 559

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            AG    A E+   +  +++ GV +  +   S ++    D +  + +L++  +M   GV+
Sbjct: 560 RAGK---ADEVLALLGRMKSGGVSRTLITFNSALLACAKDGRR-EDSLRILSEMKKEGVS 615

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+  ++   + AC  AG    A+ +   M +AG  P  +     ++A   A   +    L
Sbjct: 616 PDGKSFRLAMQACGRAGDPAGALVILRGMAKAGIPPGDRSFASAMEAFALAGDVETVLSL 675

Query: 456 FRSWTLSKTQVALGEDYDG 474
            ++  + +  VA+ E+ +G
Sbjct: 676 VKASAMLELLVAIREEEEG 694



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 38/227 (16%)

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           +++ V+  A +  W+ AL + +DM   GV P+  T+S+ + AC  AG   +A+ L E M 
Sbjct: 165 HTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTYSAAMRACRAAGRTGEALSLLETMR 224

Query: 426 Q-------------------AGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSK 463
           +                   A   P++ C NI + AC +    +RA  L    RS  +S 
Sbjct: 225 RSARGERERGGDAESGEANAASLRPDAFCFNICIDACAKGRLHERAKALLGVMRSDGVSP 284

Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
             V+     +        M    K+++      V +   +         P + TY   + 
Sbjct: 285 DVVSFNSVIN-----ALGMAGLWKEALGVMEEMVMDGGVT---------PNSVTYASAIN 330

Query: 524 ACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           AC       R   L+ E R  G+     ++   I ACG +G+ + AL
Sbjct: 331 ACGNSRQLDRALGLLKEARLAGIEVGASAYNAAIAACGHAGSADEAL 377


>gi|255086920|ref|XP_002505383.1| predicted protein [Micromonas sp. RCC299]
 gi|226520653|gb|ACO66641.1| predicted protein [Micromonas sp. RCC299]
          Length = 175

 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 91/176 (51%), Gaps = 6/176 (3%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKL 318
           T+I  CG  G + K+  +Y+ ++S+ V  N    ++L+N      ++   L+V++ M+  
Sbjct: 3   TLIKTCGRSGGWDKALELYQAMKSRGVAANTITCSALINACGKSKQWEKALDVFREMKAD 62

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           GV A++ +Y+ L+ AC        A E++   +  +  GV + D  TY T++      K 
Sbjct: 63  GVEANIFTYSALISACAKGRQLDKALEVF---RECQVSGV-EPDAITYGTVIAACEKGKR 118

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
              AL +   M +  V  N IT++S+++AC  AG  + A+ +F +M + G +P+  
Sbjct: 119 CDEALDIFRQMRAKNVDANVITYNSVLSACDRAGRADDALDIFAQMRKEGVKPDKH 174



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 56/100 (56%)

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           ++T++K    +  W  AL++ + M S GV  NTIT S+LINAC  +   E+A+ +F EM 
Sbjct: 1   FTTLIKTCGRSGGWDKALELYQAMKSRGVAANTITCSALINACGKSKQWEKALDVFREMK 60

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
             G E N    + L+ AC +  Q D+A  +FR   +S  +
Sbjct: 61  ADGVEANIFTYSALISACAKGRQLDKALEVFRECQVSGVE 100



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 78/148 (52%), Gaps = 4/148 (2%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           LE+Y+ M+  GV A+  + + L+ AC  +     A +++ E+K   A GV + ++FTYS 
Sbjct: 18  LELYQAMKSRGVAANTITCSALINACGKSKQWEKALDVFREMK---ADGV-EANIFTYSA 73

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++   A  +    AL+V  +   +GV P+ IT+ ++I AC      ++A+ +F +M    
Sbjct: 74  LISACAKGRQLDKALEVFRECQVSGVEPDAITYGTVIAACEKGKRCDEALDIFRQMRAKN 133

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
            + N    N +L AC  A + D A  +F
Sbjct: 134 VDANVITYNSVLSACDRAGRADDALDIF 161



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 4/131 (3%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           +  L+K C  +G    A E+Y   + ++++GV   +  T S ++     +K W+ AL V 
Sbjct: 1   FTTLIKTCGRSGGWDKALELY---QAMKSRGVA-ANTITCSALINACGKSKQWEKALDVF 56

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
            +M + GV  N  T+S+LI+ACA    +++A+ +F E   +G EP++     ++ AC + 
Sbjct: 57  REMKADGVEANIFTYSALISACAKGRQLDKALEVFRECQVSGVEPDAITYGTVIAACEKG 116

Query: 447 CQFDRAFRLFR 457
            + D A  +FR
Sbjct: 117 KRCDEALDIFR 127


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 118/266 (44%), Gaps = 17/266 (6%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y  M ++GV+ +  +     +  C  G     ++ Y  ++ + +KG +  D  TYS ++ 
Sbjct: 75  YNEMLEMGVVLNKVNVCNFTRCLCCIGKF---EKAYNVIREMMSKGFIP-DSSTYSKVIG 130

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
              +A   + A ++ ++M   G+TP+  T+++L++     GL+EQA + F+EM Q GC P
Sbjct: 131 YLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAP 190

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISNME 483
           N      L+ A ++  +  RA  +F            ++ T +  G    G T++   + 
Sbjct: 191 NVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIY 250

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY--YRVKALMNEMRT 541
            + K    + P+   + ++   D     +P   TY  L+   C  +     + L+  M  
Sbjct: 251 ARMKNDKVDIPDV--DIYFRIVDSELK-EPNVVTYGALVDGLCKAHKVKEARDLLETMSL 307

Query: 542 VGLSPNHISWTILIDACGGSGNVEGA 567
            G  PN I +  LID     G ++ A
Sbjct: 308 EGCEPNQIIYDALIDGFCKVGKLDEA 333



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 24/263 (9%)

Query: 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227
           +GE E    +   ++  ++ + ++D  FRIV   + +P+V   + Y  +V       C  
Sbjct: 240 AGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNV---VTYGALVDG----LCK- 291

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQ 285
             +  + RDL+  +            PN  I   +ID  G C  G   +++ ++  +   
Sbjct: 292 AHKVKEARDLLETMSLEGCE------PNQIIYDALID--GFCKVGKLDEAQEVFTKMLGH 343

Query: 286 NVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
             + N+Y ++SL++    D  L   L+V   M +     ++  Y  ++   C  G T   
Sbjct: 344 GCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKT--- 400

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            E Y  +  +E KG    +V TY+ ++  F  A      L++ + M S G  PN IT+  
Sbjct: 401 DEAYRLMLMMEEKGCYP-NVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRV 459

Query: 404 LINACANAGLVEQAMHLFEEMLQ 426
           LIN C  AGL++ A  L EEM Q
Sbjct: 460 LINHCCAAGLLDDAHKLLEEMKQ 482



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 25/259 (9%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  + K R L  A   ++    +   PN+     +ID     G+  K+  IY  
Sbjct: 193 VTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYAR 252

Query: 282 LRSQNVTL-----------------NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           +++  V +                 N+  + +L++    AH +K   ++ + M   G   
Sbjct: 253 MKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEP 312

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV-KVFADAKWWQM 381
           +   Y+ L+   C  G    AQE++ +   +   G    +V+TYS+++ K+F D K   +
Sbjct: 313 NQIIYDALIDGFCKVGKLDEAQEVFTK---MLGHGC-SPNVYTYSSLIDKLFKD-KRLDL 367

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           ALKV   ML     PN + ++ +++     G  ++A  L   M + GC PN      ++ 
Sbjct: 368 ALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMID 427

Query: 442 ACVEACQFDRAFRLFRSWT 460
              +A + DR   L +  T
Sbjct: 428 GFGKAGRVDRCLELLQLMT 446



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 107/241 (44%), Gaps = 13/241 (5%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           + + + +  K + L  AL+      ++  +PN+ I   ++D  G+C  G   ++  +   
Sbjct: 352 YSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVD--GLCKVGKTDEAYRLMLM 409

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +    N+  + ++++    A  +   LE+ + M   G   +  +Y +L+  CC AG 
Sbjct: 410 MEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGL 469

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++  E+K       + +    Y  +++ F+    +  +L +  ++   G  P   
Sbjct: 470 LDDAHKLLEEMKQTYWPKHIGM----YRKVIEGFSHE--FVASLGLLAELSEDGSVPILP 523

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +  LI+    AG +E A+ L EE+        +   + L+++   AC+ D+AF+L+   
Sbjct: 524 VYKLLIDNFIKAGRLEMALELHEELSSFSAAYQNTYVS-LIESLTLACKVDKAFKLYSDM 582

Query: 460 T 460
           T
Sbjct: 583 T 583



 Score = 38.9 bits (89), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 39/205 (19%), Positives = 79/205 (38%), Gaps = 5/205 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  FGK   +   L           +PN    R +I+ C   G    +  + E+
Sbjct: 420 VTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEE 479

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           ++      +I ++  ++   +H+   +L +   + + G +  +  Y +L+     AG   
Sbjct: 480 MKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLE 539

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
           +A E++ E+    A         TY ++++    A     A K+  DM   G  P     
Sbjct: 540 MALELHEELSSFSAAY-----QNTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSML 594

Query: 402 SSLINACANAGLVEQAMHLFEEMLQ 426
             LI      G  E+A+ L + + Q
Sbjct: 595 VCLIKGLLRVGKWEEALQLSDSICQ 619


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 154/347 (44%), Gaps = 37/347 (10%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312
           SPN+Y    +I      G+       + ++       N+  +N++++     L+   E +
Sbjct: 200 SPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYC-KLRKIGEAF 258

Query: 313 KNMQKL---GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           K ++ +   G+  ++ SYN+++   C  G      EI  E+    +K     D  T++T+
Sbjct: 259 KLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM----SKRRYVPDRVTFNTL 314

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  + +   +  AL +  +M+  G++PN +T+++LIN+   AG + +AM   ++M   G 
Sbjct: 315 INGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGL 374

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGN--TDRISNMEH 484
            PN +    L+    +     +A+++ +       + T +      +G+    R+ +   
Sbjct: 375 HPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASG 434

Query: 485 KDKQSITNTPNFVPN-SHYSS----------FDKRFSFK---------PTTTTYNILMKA 524
             ++ I     F+P+   YS+           +K F  K         P   TY+ L++ 
Sbjct: 435 LLQEMIER--GFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQG 492

Query: 525 CCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            C       V  L  EM ++GL P+ +++T LI+A    G+++ AL+
Sbjct: 493 LCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALR 539



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 141/342 (41%), Gaps = 51/342 (14%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
           SPN+    T+I+     G+  ++    + +R + +  N   + +L++  +    LK   +
Sbjct: 340 SPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQ 399

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + K M + G    + +YN L+   C+ G     ++  G ++ +  +G +  DV +YSTI+
Sbjct: 400 IMKEMVENGFTPTIITYNALINGHCILGRM---EDASGLLQEMIERGFIP-DVVSYSTII 455

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F   +  + A ++K +M++ G++P+  T+SSLI        + +   LF+EML  G  
Sbjct: 456 SGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLP 515

Query: 431 PNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           P+      L+ A C+E    D+A RL         Q     D       I+     +KQS
Sbjct: 516 PDEVTYTSLINAYCIEG-DLDKALRLHDEM----IQKGFSPDIVTYNVLINGF---NKQS 567

Query: 490 ITNTPNFVPNSHYSSFDKRFSFK-------PTTTTYNILMKACCTDYYR----------V 532
            T               KR   K       P   TYN L+  C    ++          +
Sbjct: 568 RTKEA------------KRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCM 615

Query: 533 KALMNE-------MRTVGLSPNHISWTILIDACGGSGNVEGA 567
           K LMNE       M   G   N   + ++I      GN+E A
Sbjct: 616 KGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKA 657



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 106/269 (39%), Gaps = 53/269 (19%)

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
             +K    ++K M + GV  ++ +YNIL++  C AGN  +    +GE   +E  G L  +
Sbjct: 182 QSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGE---MERNGCLP-N 237

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V TY+TI+  +   +    A K+   M   G+ PN I+++ +IN     G +++   + E
Sbjct: 238 VVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILE 297

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
           EM +    P+    N L+        F +A  L                   + + + N 
Sbjct: 298 EMSKRRYVPDRVTFNTLINGYCNVGNFHQALVL-------------------HAEMVKN- 337

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMR 540
                                         P   TY  L+ + C   +  R    +++MR
Sbjct: 338 ---------------------------GLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMR 370

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQ 569
             GL PN  ++T LID     G ++ A Q
Sbjct: 371 DRGLHPNGRTYTTLIDGFSQQGFLKQAYQ 399



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 126/301 (41%), Gaps = 20/301 (6%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +  I++++    V+ N+Y +N L+     A +L+  L  +  M++ G + ++ +YN ++ 
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIID 246

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           A C         E +  ++ +  KG L  ++ +Y+ ++         +   ++ E+M   
Sbjct: 247 AYCKLRKI---GEAFKLLRLMALKG-LNPNLISYNVVINGLCREGQMKETSEILEEMSKR 302

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
              P+ +T+++LIN   N G   QA+ L  EM++ G  PN      L+ +  +A   +RA
Sbjct: 303 RYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRA 362

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
              F      +     G  Y    D  S      KQ+       V N           F 
Sbjct: 363 ME-FLDQMRDRGLHPNGRTYTTLIDGFSQQGFL-KQAYQIMKEMVENG----------FT 410

Query: 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           PT  TYN L+   C          L+ EM   G  P+ +S++ +I     +  +E A Q 
Sbjct: 411 PTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQL 470

Query: 571 R 571
           +
Sbjct: 471 K 471



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 15/210 (7%)

Query: 363 VFTYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           V +Y+ I+  V    +  ++A  + ++M+ +GV+PN  T++ LI     AG +E  +  F
Sbjct: 167 VLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFF 226

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM + GC PN    N ++ A  +  +   AF+L R   L      L  +       I+ 
Sbjct: 227 GEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALK----GLNPNLISYNVVING 282

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEM 539
           +  + +   T+              KR  + P   T+N L+   C   ++++   L  EM
Sbjct: 283 LCREGQMKETSEI-------LEEMSKR-RYVPDRVTFNTLINGYCNVGNFHQALVLHAEM 334

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              GLSPN +++T LI++   +GN+  A++
Sbjct: 335 VKNGLSPNVVTYTTLINSMCKAGNLNRAME 364



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 27/176 (15%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++++ S  +  +   + SL+N      DL   L ++  M + G   D+ +YN+L+    
Sbjct: 505 LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLI---- 560

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDV---FTYSTIV---------------KVFADAK 377
              N    Q    E K L  K + +  V    TY+T++               K F    
Sbjct: 561 ---NGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKG 617

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
               A +V E ML  G   N   ++ +I+  +  G +E+A +L++EML +G  P+S
Sbjct: 618 LMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHS 673


>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
 gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 157/372 (42%), Gaps = 40/372 (10%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +RY      ++I F   +  +GK  +   A R      K  S+PN+     +++  G  G
Sbjct: 129 LRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGG 188

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNM---QKLGVMADMA 325
               + AI+  ++S     +   +  ++   V     K   EV++ +   +K  +  D  
Sbjct: 189 KCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQK 248

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
            Y++++     AGN   A++++     +  KGV +  V TY++++        ++   K+
Sbjct: 249 MYHMMIYMYKKAGNYEKARKVFS---SMVGKGVPQSTV-TYNSLMSFETS---YKEVSKI 301

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + M  + + P+ ++++ LI A   A   E+A+ +FEEML AG  P  +  NILL A   
Sbjct: 302 YDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAI 361

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT-PNFVPNSHYSS 504
           +   ++A  +F+S                  DRI      D  S T     +V  S    
Sbjct: 362 SGMVEQAKTVFKSM---------------RRDRI----FPDLWSYTTMLSAYVNASDMEG 402

Query: 505 FDKRF------SFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556
            +K F       F+P   TY  L+K  A   D  ++  +  +MR  G+  N    T ++D
Sbjct: 403 AEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 462

Query: 557 ACGGSGNVEGAL 568
           A G   N   AL
Sbjct: 463 ASGRCKNFGSAL 474



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 32/241 (13%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307
           KK    P+  +   +I +    G+Y K+R ++  +  + V  +   +NSLM+      K 
Sbjct: 239 KKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETS-YKE 297

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL-------------- 353
             ++Y  MQ+  +  D+ SY +L+KA   A     A  ++ E+                 
Sbjct: 298 VSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLD 357

Query: 354 ---------EAKGVLK--------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
                    +AK V K         D+++Y+T++  + +A   + A K  + +   G  P
Sbjct: 358 AFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEP 417

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N +T+ +LI   A A  VE+ M ++E+M  +G + N      ++ A      F  A   +
Sbjct: 418 NIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWY 477

Query: 457 R 457
           +
Sbjct: 478 K 478



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 102/219 (46%), Gaps = 12/219 (5%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301
           + YD  ++    P++     +I   G      ++ +++E++    V      +N L++  
Sbjct: 300 KIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAF 359

Query: 302 AHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           A    ++    V+K+M++  +  D+ SY  +L A   A +   A++ +   K ++  G  
Sbjct: 360 AISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFF---KRIKVDG-F 415

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA---CANAGLVEQ 416
           + ++ TY T++K +A A   +  ++V E M  +G+  N    +++++A   C N G    
Sbjct: 416 EPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFG---S 472

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           A+  ++EM   G  P+ +  N+LL       + + A  L
Sbjct: 473 ALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKEL 511


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 127/286 (44%), Gaps = 33/286 (11%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +Y  M ++ + + + ++NI++   C  G    A+E  G   H+E  GV K +V TY+TI+
Sbjct: 203 LYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIG---HMETLGV-KPNVVTYNTII 258

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                   +Q A  + + M   G+ P+  T++S I+     G +E+A  L  +ML+ G  
Sbjct: 259 HGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLV 318

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD------------GNTDR 478
           PN+   N L+         D+A+  +R   +SK  +A    Y+            G+ D 
Sbjct: 319 PNAVTYNALIDGYCNKGDLDKAYA-YRDEMISKGIMASLVTYNLFIHALFMEGRMGDADN 377

Query: 479 -ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF-----------KPTTTTYNILMKACC 526
            I  M  K       T N + N +    D + +F           +PT  TY  L+    
Sbjct: 378 MIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYV-L 436

Query: 527 TDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               R+K   AL ++++  GL P+ I +  LID    +GN++ A Q
Sbjct: 437 GKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQ 482



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/357 (19%), Positives = 135/357 (37%), Gaps = 90/357 (25%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-------------- 299
           PN+    TII    + G + ++R I++ ++ + +  + Y +NS ++              
Sbjct: 249 PNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGL 308

Query: 300 -----------------------VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
                                   N  DL         M   G+MA + +YN+ + A  +
Sbjct: 309 ICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFM 368

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G    A  +   +K +  KG++  D  T++ ++  +      + A  + ++M+  G+ P
Sbjct: 369 EGRMGDADNM---IKEMREKGMMP-DAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQP 424

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             +T++SLI        +++A  LF ++ Q G  P+    N L+         DRAF+L 
Sbjct: 425 TLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLL 484

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
           +                     + NM+                             P   
Sbjct: 485 KE--------------------MDNMK---------------------------VLPDEI 497

Query: 517 TYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           TYN LM+  C +      + L++EM+  G+ P+HIS+  LI      G+++ A + R
Sbjct: 498 TYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVR 554


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 11/179 (6%)

Query: 283 RSQNVTLNIYVFN----SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           R +    +++ +N    +L   NA  L +  E ++ MQ+ G   D  +Y+I+L+  C AG
Sbjct: 30  RQKGYQHSVFTYNCFLDALAKANAGQLAY--EKFQQMQRRGYPPDDFTYSIVLRGLCKAG 87

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS-AGVTPN 397
               A+E+ G+++     GV KL+V TYS ++     A     AL++ + M S  G  P+
Sbjct: 88  ELDKAKELLGQLRE---SGV-KLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPD 143

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            +T++SL+    +   + +A  LFE M +AGCEPN    + LL    +A + D A RL+
Sbjct: 144 VVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLW 202



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 141/317 (44%), Gaps = 21/317 (6%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLG-VM 321
           G+C  G+  K++ +   LR   V LN+  ++ +++    A  +   LE++K M   G  +
Sbjct: 82  GLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCV 141

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            D+ ++N LLK  C +G  +   E +   +++ AK   + +V +YST++     A     
Sbjct: 142 PDVVTFNSLLKGLC-SGERM--SEAFVLFEYM-AKAGCEPNVISYSTLLDGLCKAGRLDE 197

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL- 440
           A ++ E+M+     P+ + ++S +     A  V +A     +M+  G + ++   + ++ 
Sbjct: 198 ACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIG 257

Query: 441 ----QACVEACQFDRAFRLFRSWTLSKT----QVALGEDYDGNTDRISNMEHKDKQSITN 492
               +   E  Q      L RS  L +     +  +  ++  + +  + + H   +S   
Sbjct: 258 ILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKS-KR 316

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHIS 550
            P+ V         K F   P   TYNI++   C        + L+NEM   GLSP+ ++
Sbjct: 317 LPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVT 376

Query: 551 WTILIDACGGSGNVEGA 567
           ++ L+D     G ++ A
Sbjct: 377 YSALVDGLCKLGKLDRA 393



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 9/190 (4%)

Query: 279 YEDLRSQNVTLNIYVFNSLMNV-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           +E++ S+N   +  +FN+L++         D     +  K+M++     ++ +YNI++  
Sbjct: 289 FEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDN 348

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C A     AQE+  E+    A   L  DV TYS +V           A  + E+M   G
Sbjct: 349 LCKAKQLDEAQELVNEM----ANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEG 404

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           V P++ T +S++NA + AG V+ A+   E M   G  P+    N LL    +A + D A 
Sbjct: 405 VFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAI 464

Query: 454 RLFRSWTLSK 463
                   +K
Sbjct: 465 TFLAKMVAAK 474



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 13/184 (7%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFT 308
           SP++     ++D  G+C  G   ++  + E++  + V  + +   S++N    A  + + 
Sbjct: 371 SPDVVTYSALVD--GLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYA 428

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L   + M+  G   D+ +YN LL   C AG   + + I    K + AK     DVF+Y+ 
Sbjct: 429 LSHLETMKARGSTPDLVTYNTLLDGLCKAGR--IDEAITFLAKMVAAK--CTPDVFSYTI 484

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I+     +     A  + ++M+  GV P+T+ + SL++  A  GL + A+ L +  L   
Sbjct: 485 IITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSL--- 541

Query: 429 CEPN 432
           C+P+
Sbjct: 542 CKPD 545



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 82/170 (48%), Gaps = 6/170 (3%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  +N +++    A  L    E+   M   G+  D+ +Y+ L+   C  G    A ++ 
Sbjct: 338 NLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL- 396

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             ++ +  +GV   D FT ++I+   + A     AL   E M + G TP+ +T+++L++ 
Sbjct: 397 --LEEMSKEGVFP-DSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDG 453

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
              AG +++A+    +M+ A C P+     I++ A   + Q   A  +F+
Sbjct: 454 LCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQ 503



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 82/212 (38%), Gaps = 50/212 (23%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           VFTY+  +   A A   Q+A +  + M   G  P+  T+S ++     AG +++A  L  
Sbjct: 38  VFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLG 97

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
           ++ ++G + N    ++++  C +A + D A  +F++ +     V                
Sbjct: 98  QLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCV---------------- 141

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMR 540
                                         P   T+N L+K  C+     +A  L   M 
Sbjct: 142 ------------------------------PDVVTFNSLLKGLCSGERMSEAFVLFEYMA 171

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
             G  PN IS++ L+D    +G ++ A  CR 
Sbjct: 172 KAGCEPNVISYSTLLDGLCKAGRLDEA--CRL 201



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 94/216 (43%), Gaps = 12/216 (5%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305
           K+    PN+     ++D         +++ +  ++ +  ++ ++  +++L++       L
Sbjct: 331 KEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKL 390

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE---AKGVLKLD 362
               ++ + M K GV  D  +   +L A   AG    A      + HLE   A+G    D
Sbjct: 391 DRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYA------LSHLETMKARGSTP-D 443

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           + TY+T++     A     A+     M++A  TP+  +++ +I A   +G    A  +F+
Sbjct: 444 LVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQ 503

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           EM++ G  P++   + LL         D A  L ++
Sbjct: 504 EMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKT 539


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 121/286 (42%), Gaps = 34/286 (11%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           ++++  M + G+  D  +Y IL+   C A  T LA ++     H + KG  K DVFTY  
Sbjct: 97  VQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKL-----HEKMKGNCKGDVFTYGM 151

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I+           AL +  +M+ AG+ P+ + +SSL++     G +++A+  F+EM   G
Sbjct: 152 IIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRG 211

Query: 429 CEPNSQCCNILLQACVEACQF-----------DRAFRLFRSWTLSKTQVAL-GEDYDGNT 476
              +    N L+     A  +           DR F    ++T +     L  E   G  
Sbjct: 212 ISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSP-DAFTFTILIDGLCKEGKVGEA 270

Query: 477 DRISN-MEHKDKQSITNTPNFVPNS------------HYSSFDKRFSFKPTTTTYNILMK 523
            +I   M HK K+    T N + N              + S   R   K    +YNIL+ 
Sbjct: 271 QQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADR-GIKLNVFSYNILIN 329

Query: 524 ACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             C D    +A  L  EMR  GL P+ +++  LI A   SG V  A
Sbjct: 330 GYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTA 375



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 145/343 (42%), Gaps = 62/343 (18%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLN 290
           K R    A++ ++  K +    +++    IID   +C D M + A+  + ++    +  +
Sbjct: 124 KARKTGLAIKLHEKMKGNCKG-DVFTYGMIID--SLCKDGMTTEALDMFSEMIGAGILPD 180

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           + V++SLM+       LK  LE +K M+  G+ AD+ +YN L+     AG   L +E+  
Sbjct: 181 VVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAG---LWKEVTW 237

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            +  +  +G    D FT++ ++           A ++ E M   G  P+ +T+++L+N  
Sbjct: 238 FLNLMVDRG-FSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGL 296

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468
              G +E A  LFE +   G + N    NIL+    +  + D AFRLF            
Sbjct: 297 CLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFE----------- 345

Query: 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
                         E + K                        KP+T TYN L+ A C  
Sbjct: 346 --------------EMRPK----------------------GLKPSTVTYNTLIGALCQS 369

Query: 529 YYRVKA---LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             RV+    L  EM+T G      ++ +L+D    +G++E A+
Sbjct: 370 -GRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAI 411



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 107/237 (45%), Gaps = 33/237 (13%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P++    T+++   + G    +  ++E L  + + LN++ +N L+N    D K      +
Sbjct: 284 PDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRL 343

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK-------------------- 351
           ++ M+  G+     +YN L+ A C +G    AQ+++ E++                    
Sbjct: 344 FEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCK 403

Query: 352 --HLE---------AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             HLE          K   K ++  +S ++     A   + A K  +++   G+ P+TI 
Sbjct: 404 NGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIA 463

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           ++ LIN   N G++ +A+ L  +M + GC P+S   N+++Q  ++  +   A +L  
Sbjct: 464 YNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLE 520



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 149/361 (41%), Gaps = 67/361 (18%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN------------ 299
           P++ +  +++D  G+C  G   ++   ++++  + ++ ++Y +NSL++            
Sbjct: 179 PDVVVYSSLMD--GLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVT 236

Query: 300 ----------VNAHDLKFTL---------------EVYKNMQKLGVMADMASYNILLKAC 334
                      +     FT+               ++ + M   G   D+ +YN L+   
Sbjct: 237 WFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGL 296

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           CL G    A +++   + L  +G+ KL+VF+Y+ ++  +   +    A ++ E+M   G+
Sbjct: 297 CLVGQLEDATKLF---ESLADRGI-KLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGL 352

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+T+T+++LI A   +G V  A  LF EM   G         +LL    +    + A  
Sbjct: 353 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAID 412

Query: 455 LFRSW--TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK--RFS 510
           LF+S   T  K  + +         R   +E   KQ                FD+  +  
Sbjct: 413 LFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQ----------------FDEISKNG 456

Query: 511 FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            +P T  YNIL+   C      +A  L+ +M   G  P+ I++ ++I        +  A+
Sbjct: 457 LEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAI 516

Query: 569 Q 569
           Q
Sbjct: 517 Q 517


>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 158/372 (42%), Gaps = 40/372 (10%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +RY      ++I F   +  +GK  +   A R      K  S+PN+     +++  G  G
Sbjct: 136 LRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGG 195

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNM---QKLGVMADMA 325
               + AI+  ++S     +   +  ++   V     K   EV++ +   +K  +  D  
Sbjct: 196 KCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQK 255

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
            Y++++     AGN   A++++     +  KGV +  V TY++++        ++   K+
Sbjct: 256 MYHMMIYMYKKAGNYEKARKVFS---SMVGKGVPQSTV-TYNSLMSFETS---YKEVSKI 308

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + M  + + P+ ++++ LI A   A   E+A+ +FEEML AG  P  +  NILL A   
Sbjct: 309 YDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAI 368

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN-FVPNSHYSS 504
           +   ++A  +F+S                  DRI      D  S T   + +V  S    
Sbjct: 369 SGMVEQAKTVFKSM---------------RRDRI----FPDLWSYTTMLSAYVNASDMEG 409

Query: 505 FDKRF------SFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556
            +K F       F+P   TY  L+K  A   D  ++  +  +MR  G+  N    T ++D
Sbjct: 410 AEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 469

Query: 557 ACGGSGNVEGAL 568
           A G   N   AL
Sbjct: 470 ASGRCKNFGSAL 481



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 32/241 (13%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307
           KK    P+  +   +I +    G+Y K+R ++  +  + V  +   +NSLM+      K 
Sbjct: 246 KKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETS-YKE 304

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL-------------- 353
             ++Y  MQ+  +  D+ SY +L+KA   A     A  ++ E+                 
Sbjct: 305 VSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLD 364

Query: 354 ---------EAKGVLK--------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
                    +AK V K         D+++Y+T++  + +A   + A K  + +   G  P
Sbjct: 365 AFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEP 424

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N +T+ +LI   A A  VE+ M ++E+M  +G + N      ++ A      F  A   +
Sbjct: 425 NIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWY 484

Query: 457 R 457
           +
Sbjct: 485 K 485



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 102/219 (46%), Gaps = 12/219 (5%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301
           + YD  ++    P++     +I   G      ++ +++E++    V      +N L++  
Sbjct: 307 KIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAF 366

Query: 302 AHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           A    ++    V+K+M++  +  D+ SY  +L A   A +   A++ +   K ++  G  
Sbjct: 367 AISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFF---KRIKVDG-F 422

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA---CANAGLVEQ 416
           + ++ TY T++K +A A   +  ++V E M  +G+  N    +++++A   C N G    
Sbjct: 423 EPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFG---S 479

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           A+  ++EM   G  P+ +  N+LL       + + A  L
Sbjct: 480 ALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKEL 518


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 131/307 (42%), Gaps = 35/307 (11%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
           SPN+     +I    + G    +  ++  +  +N+  + Y FN L++    D  +K    
Sbjct: 227 SPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKT 286

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+  M K G++ D+ +YN L+   CL      A+ I+  +    A+G +  D+ +Y+ ++
Sbjct: 287 VFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTM----AQGGVNPDIRSYNILI 342

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F   K    A+ +  +M    + PN +T++SLI+  + +G +  A+ L ++M   G  
Sbjct: 343 NGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVP 402

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN    N ++ A  +  Q D+A  L   +     Q ++   Y    D +  +E       
Sbjct: 403 PNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSM-YTYTILIDGLCKVE------- 454

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNH 548
                               +  T  TYN+++   C    +    +L+++M+     PN 
Sbjct: 455 -------------------GYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNA 495

Query: 549 ISWTILI 555
           +++ I I
Sbjct: 496 VTYEITI 502



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 113/255 (44%), Gaps = 20/255 (7%)

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
           LG   D  SY  L+   C  G T  A ++   ++ ++ K +++L+   Y+T++      K
Sbjct: 154 LGFHLDQVSYGTLIHGLCKVGETRAALDL---LQRVDGK-LVQLNAVMYNTVIYGMCKDK 209

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
               A  +  +M+S G++PN +T+S+LI+     G ++ A+ LF +++    +P+    N
Sbjct: 210 HVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFN 269

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM-EHKDKQSITNTPNF 496
           IL+    +  +      +F +  + +  +     Y+   D    + E    +SI NT   
Sbjct: 270 ILVDGFCKDRKMKEGKTVF-AMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTM-- 326

Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTIL 554
                      +    P   +YNIL+   C      KA  L NEM    + PN +++  L
Sbjct: 327 ----------AQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSL 376

Query: 555 IDACGGSGNVEGALQ 569
           ID    SG +  ALQ
Sbjct: 377 IDGLSKSGRISYALQ 391



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 135/308 (43%), Gaps = 25/308 (8%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGV 320
           + G+C  G+   +  + + +  + V LN  ++N+++     D  +    ++Y  M   G+
Sbjct: 167 IHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGI 226

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             ++ +Y+ L+    + G    A +++ ++  LE    +K D +T++ +V  F   +  +
Sbjct: 227 SPNVVTYSALISGFFVVGKLKDAIDLFNKII-LEN---IKPDGYTFNILVDGFCKDRKMK 282

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
               V   M+  G+ P+ +T++SL++       V  A  +F  M Q G  P+ +  NIL+
Sbjct: 283 EGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILI 342

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
               +  + D+A  LF      K  +     Y+   D +S         I+     V   
Sbjct: 343 NGFCKIKKVDKAMNLFNEMH-CKNIIPNVVTYNSLIDGLSK-----SGRISYALQLVDQM 396

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDAC 558
           H    D+     P   TYN ++ A    +   +  AL+ + +  G+ P+  ++TILID  
Sbjct: 397 H----DR--GVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILID-- 448

Query: 559 GGSGNVEG 566
            G   VEG
Sbjct: 449 -GLCKVEG 455


>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
 gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
          Length = 526

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 157/372 (42%), Gaps = 40/372 (10%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +RY      ++I F   +  +GK  +   A R      K  S+PN+     +++  G  G
Sbjct: 72  LRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGG 131

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNM---QKLGVMADMA 325
               + AI+  ++S     +   +  ++   V     K   EV++ +   +K  +  D  
Sbjct: 132 KCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQK 191

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
            Y++++     AGN   A++++     +  KGV +  V TY++++        ++   K+
Sbjct: 192 MYHMMIYMYKKAGNYEKARKVFS---SMVGKGVPQSTV-TYNSLMSFETS---YKEVSKI 244

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + M  + + P+ ++++ LI A   A   E+A+ +FEEML AG  P  +  NILL A   
Sbjct: 245 YDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAI 304

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT-PNFVPNSHYSS 504
           +   ++A  +F+S                  DRI      D  S T     +V  S    
Sbjct: 305 SGMVEQAKTVFKSM---------------RRDRI----FPDLWSYTTMLSAYVNASDMEG 345

Query: 505 FDKRF------SFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556
            +K F       F+P   TY  L+K  A   D  ++  +  +MR  G+  N    T ++D
Sbjct: 346 AEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 405

Query: 557 ACGGSGNVEGAL 568
           A G   N   AL
Sbjct: 406 ASGRCKNFGSAL 417



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 32/241 (13%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307
           KK    P+  +   +I +    G+Y K+R ++  +  + V  +   +NSLM+      K 
Sbjct: 182 KKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETS-YKE 240

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL-------------- 353
             ++Y  MQ+  +  D+ SY +L+KA   A     A  ++ E+                 
Sbjct: 241 VSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLD 300

Query: 354 ---------EAKGVLK--------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
                    +AK V K         D+++Y+T++  + +A   + A K  + +   G  P
Sbjct: 301 AFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEP 360

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N +T+ +LI   A A  VE+ M ++E+M  +G + N      ++ A      F  A   +
Sbjct: 361 NIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWY 420

Query: 457 R 457
           +
Sbjct: 421 K 421



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 102/219 (46%), Gaps = 12/219 (5%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301
           + YD  ++    P++     +I   G      ++ +++E++    V      +N L++  
Sbjct: 243 KIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAF 302

Query: 302 AHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           A    ++    V+K+M++  +  D+ SY  +L A   A +   A++ +   K ++  G  
Sbjct: 303 AISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFF---KRIKVDG-F 358

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA---CANAGLVEQ 416
           + ++ TY T++K +A A   +  ++V E M  +G+  N    +++++A   C N G    
Sbjct: 359 EPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFG---S 415

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           A+  ++EM   G  P+ +  N+LL       + + A  L
Sbjct: 416 ALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKEL 454


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 147/326 (45%), Gaps = 35/326 (10%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN----VNAHDLKF 307
           PN+     +I+  G C   M   A+   E + S+ ++ N   +N L+      N H    
Sbjct: 391 PNVITYNALIN--GYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHK--- 445

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            + V   M +  V+ D+ +YN L+   C +GN   A   Y  +  +  +G++  D +TY+
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSA---YRLLSLMNDRGLVP-DQWTYT 501

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           +++     +K  + A  + + +   GV PN + +++LI+    AG V++A  + E+ML  
Sbjct: 502 SMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSK 561

Query: 428 GCEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            C PNS   N L+   C +        +L  +  L +  V +G     +TD I  + H+ 
Sbjct: 562 NCLPNSLTFNALIHGLCADG-------KLKEATLLEEKMVKIGLQPTVSTDTI--LIHR- 611

Query: 487 KQSITNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTV 542
              +    +F  +  YS F +  S   KP   TY   ++  C +   + A  +M +MR  
Sbjct: 612 ---LLKDGDF--DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMREN 666

Query: 543 GLSPNHISWTILIDACGGSGNVEGAL 568
           G+SP+  +++ LI   G  G    A 
Sbjct: 667 GVSPDLFTYSSLIKGYGDLGQTNFAF 692



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 135/347 (38%), Gaps = 79/347 (22%)

Query: 289 LNIYVFNSLMNVNAHDLKFTL-----EVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
           L I  +N+L+N  A   +F L     +VY  M +  V  ++ +YN ++   C  GN   A
Sbjct: 181 LIIGCYNTLLNSLA---RFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEA 237

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            +   ++     +  L  D FTY++++  +   K    A KV  +M   G   N + ++ 
Sbjct: 238 NQYVSKI----VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTH 293

Query: 404 LINACANAGLVEQAMHLF-----------------------------------EEMLQAG 428
           LI+    A  +++AM LF                                   +EM + G
Sbjct: 294 LIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETG 353

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK-------TQVALGEDY------DGN 475
            +PN     +L+ +    C+F++A  L     L K       T  AL   Y      +  
Sbjct: 354 IKPNIHTYTVLIDSLCSQCKFEKARELL-GQMLEKGLMPNVITYNALINGYCKRGMIEDA 412

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSS--------FDKRFSFK--PTTTTYNILMKAC 525
            D +  ME +     T T N +   +  S         +K    K  P   TYN L+   
Sbjct: 413 VDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQ 472

Query: 526 C-----TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           C        YR+ +LMN+    GL P+  ++T +ID+   S  VE A
Sbjct: 473 CRSGNFDSAYRLLSLMNDR---GLVPDQWTYTSMIDSLCKSKRVEEA 516



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 10/215 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           + + +    K + +  A   +D+ ++   +PN+ +   +ID  G C  G   ++  + E 
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALID--GYCKAGKVDEAHLMLEK 557

Query: 282 LRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S+N   N   FN+L++    D  LK    + + M K+G+   +++  IL+      G+
Sbjct: 558 MLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD 617

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
                  Y   + + + G  K D  TY+T ++ +        A  +   M   GV+P+  
Sbjct: 618 ---FDHAYSRFQQMLSSGT-KPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLF 673

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           T+SSLI    + G    A  + + M   GCEP+  
Sbjct: 674 TYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQH 708



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 30/208 (14%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           KL +  Y+T++   A         +V  +ML   V PN  T++ ++N     G VE+A  
Sbjct: 180 KLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQ 239

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS---KTQVALGEDYDG-- 474
              ++++AG +P+      L+    +    D AF++F    L    + +VA      G  
Sbjct: 240 YVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLC 299

Query: 475 ---NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR 531
                D   ++  K K                  D+ F   PT  TY +L+K+ C    +
Sbjct: 300 VARRIDEAMDLFVKMKD-----------------DECF---PTVRTYTVLIKSLCGSERK 339

Query: 532 VKA--LMNEMRTVGLSPNHISWTILIDA 557
            +A  L+ EM   G+ PN  ++T+LID+
Sbjct: 340 SEALNLVKEMEETGIKPNIHTYTVLIDS 367



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 103/259 (39%), Gaps = 42/259 (16%)

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           +  YN LL +    G     +++Y E+  LE K  +  +++TY+ +V  +      + A 
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEM--LEDK--VCPNIYTYNKMVNGYCKLGNVEEAN 238

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           +    ++ AG+ P+  T++SLI        ++ A  +F EM   GC  N      L+   
Sbjct: 239 QYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGL 298

Query: 444 VEACQFDRAFRLF------------RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
             A + D A  LF            R++T+    +   E      + +  ME        
Sbjct: 299 CVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEET------ 352

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHI 549
                               KP   TY +L+ + C+   + + + L+ +M   GL PN I
Sbjct: 353 ------------------GIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVI 394

Query: 550 SWTILIDACGGSGNVEGAL 568
           ++  LI+     G +E A+
Sbjct: 395 TYNALINGYCKRGMIEDAV 413



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 17/146 (11%)

Query: 304 DLKFTLEVYKNMQK-LGVMADMASYNILLKACCL------AGNTVLAQEIYGEVKHLEAK 356
           +L+   +V+ +MQ+  G+      +N LL  CC       A   V      G +  LE+ 
Sbjct: 775 NLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESC 834

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
            VL         I  ++   +  +    V +++L  G   + + W  +I+     GLVE 
Sbjct: 835 KVL---------ICGLYKKGEK-ERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEA 884

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQA 442
              LF  M + GC+ +SQ  ++L++ 
Sbjct: 885 FYELFNVMEKNGCKFSSQTYSLLIEG 910



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
           N  +    +E+ + M +  V  +  SY  L+   C  GN  +A++++    H++    + 
Sbjct: 737 NMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVF---DHMQRNEGIS 793

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
                ++ ++      K    A KV +DM+  G  P   +   LI      G  E+   +
Sbjct: 794 PSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSV 853

Query: 421 FEEMLQAG 428
           F+ +LQ G
Sbjct: 854 FQNLLQCG 861


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 159/385 (41%), Gaps = 40/385 (10%)

Query: 194  EFRIVQLCVNKPDVNLAIRYACIVPRAD------------------ILFCNFVREFGKKR 235
            EF  V +C N    N+ I + C + R +                  I +   +  + +  
Sbjct: 659  EFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFG 718

Query: 236  DLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
            +L    +  +  K+    PN Y   +II + C IC    ++   + ++  Q +  +  V+
Sbjct: 719  ELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRIC-KLAEAEEAFSEMIGQGILPDTIVY 777

Query: 295  NSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
             +L++      D++   + +  M    +  D+ +Y  ++   C  G+ V A +++ E   
Sbjct: 778  TTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE--- 834

Query: 353  LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
            +  +G L+ D+ T++ ++  +  A   + A +V   M+ AG +PN +T+++LI+     G
Sbjct: 835  MLCRG-LEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEG 893

Query: 413  LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
             ++ A  L  EM + G +PN    N ++    ++   + A +L          V   E  
Sbjct: 894  DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL----------VGEFEAA 943

Query: 473  DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YY 530
              N D ++     D    +   +           K    +PT  T+N+LM   C      
Sbjct: 944  GLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGK--GLQPTIVTFNVLMNGFCLHGMLE 1001

Query: 531  RVKALMNEMRTVGLSPNHISWTILI 555
              + L+N M   G++PN  ++  L+
Sbjct: 1002 DGEKLLNWMLAKGIAPNATTFNCLV 1026



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 119/271 (43%), Gaps = 39/271 (14%)

Query: 222  ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
            I F   +  + K   +  A R ++   +   SPN+    T+ID  G+C  GD   +  + 
Sbjct: 845  ITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLID--GLCKEGDLDSANELL 902

Query: 280  EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
             ++    +  NI+ +NS++N    + +++  +++    +  G+ AD  +Y  L+ A C +
Sbjct: 903  HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 962

Query: 338  GNTVLAQEIYGEV--KHLE------------------------------AKGVLKLDVFT 365
            G    AQEI  E+  K L+                              AKG+   +  T
Sbjct: 963  GEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP-NATT 1021

Query: 366  YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
            ++ +VK +      + A  + +DM S GV P+  T+ +L+    NA  +++A  LF+EM 
Sbjct: 1022 FNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMK 1081

Query: 426  QAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
              G   +    ++L++   +  +F  A  +F
Sbjct: 1082 GKGFSVSVSTYSVLIKGFFKRKKFVEAREIF 1112



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 127/329 (38%), Gaps = 81/329 (24%)

Query: 274 KSRAIYEDLRSQNVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           ++R ++E + +  + L++    V+ + ++ + +     + V++   ++GV  ++ASYNI+
Sbjct: 616 EARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASYNIV 675

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +   C  G          E  HL     L L                   M LK      
Sbjct: 676 IHFVCQLGRI-------NEAHHL-----LLL-------------------MELK------ 698

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
             G TP+ I++S++IN     G +++   L E+M Q G +PNS     ++      C+  
Sbjct: 699 --GYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLA 756

Query: 451 RAFRLFRSW--------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
            A   F           T+  T +  G    G+  R ++    +  S   TP+ +    Y
Sbjct: 757 EAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDI-RAASKFFYEMHSRDITPDVL---TY 812

Query: 503 SSFDKRF-------------------SFKPTTTTYNILMKACC-----TDYYRVKALMNE 538
           ++    F                     +P   T+  LM   C      D +RV    N 
Sbjct: 813 TAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVH---NH 869

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGA 567
           M   G SPN +++T LID     G+++ A
Sbjct: 870 MIQAGCSPNVVTYTTLIDGLCKEGDLDSA 898



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 6/170 (3%)

Query: 261  TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEVYKN-MQKL 318
            T++D     G+  K++ I  ++  + +   I  FN LMN    H +    E   N M   
Sbjct: 954  TLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK 1013

Query: 319  GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
            G+  +  ++N L+K  C+  N   A  IY   K + ++GV + D  TY  +VK   +A+ 
Sbjct: 1014 GIAPNATTFNCLVKQYCIRNNLKAATAIY---KDMCSRGV-EPDGKTYENLVKGHCNARN 1069

Query: 379  WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
             + A  + ++M   G + +  T+S LI          +A  +F++M + G
Sbjct: 1070 MKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDG 1119


>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 144/332 (43%), Gaps = 22/332 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           FC  +R++ + + +  A+  ++  +K+   PN+    +++       + +K++ I+  ++
Sbjct: 114 FCIIMRKYARSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQEIFNGMK 173

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            Q +  +   ++ L+     A +L    E+++ M  +G   D+ +Y I++   C AG   
Sbjct: 174 DQFIP-DSKTYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAGRV- 231

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
              E  G VK +++  V K   F YS +V  +      + A+    DM    +  +   +
Sbjct: 232 --DEAVGIVKEMDS-SVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVY 288

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           ++LI A      ++ A  +  EM   G  PNS+ CNI+L + +     D AFR+FR    
Sbjct: 289 NALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFR---- 344

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
            +       D D  T  I      DK  +              + +   F P+  T+++L
Sbjct: 345 -RMIKVCDPDADTYTMMIKMFCENDKLEMA--------LKVWKYMRLKQFVPSMHTFSVL 395

Query: 522 MKACCTDYYRVKA--LMNEMRTVGLSPNHISW 551
           +   C      KA  L+ EM   G+ P+ +++
Sbjct: 396 INGLCKKGNASKACILLEEMIEKGIRPSSVTF 427



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 178/430 (41%), Gaps = 68/430 (15%)

Query: 179 EVLEEFRLPVKELDEEFRIVQLCVNKPDVNL-------AIRYACIV--------PRADIL 223
           E+++E   P K      RI ++ ++ P + L        IR + IV          A +L
Sbjct: 6   EIIKETADPTK------RICKIMISCPKLELDTSLSESGIRVSPIVVENVLKRFENAGML 59

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
              F    GK+R+   ++RAY                T+I+       Y     +   +R
Sbjct: 60  AYQFFEWAGKQRNYTHSIRAY---------------HTMIESLAKIRQYQIMWDLVNKMR 104

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTV 341
           S  + LN+  F  +M   A   K    VY    M+K  V  ++A++N LL A C + N V
Sbjct: 105 SLKI-LNVETFCIIMRKYARSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVV 163

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            AQEI+  +K          D  TYS +++ +  A     A ++  +M+  G  P+ +T+
Sbjct: 164 KAQEIFNGMKDQ-----FIPDSKTYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTY 218

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
             +++    AG V++A+ + +EM  + C+P S   ++L+       + + A   F     
Sbjct: 219 GIMVDILCKAGRVDEAVGIVKEMDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMER 278

Query: 462 SKTQ--VALGEDYDG---------NTDRISN-MEHKDKQSITNTPNFVPNSHYSSFDKRF 509
           ++ +  VA+     G         N  R+ N M+ K  +  + T N + NS  S  D   
Sbjct: 279 NEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDE 338

Query: 510 SFK----------PTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDA 557
           +F+          P   TY +++K  C +     AL     MR     P+  ++++LI+ 
Sbjct: 339 AFRVFRRMIKVCDPDADTYTMMIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFSVLING 398

Query: 558 CGGSGNVEGA 567
               GN   A
Sbjct: 399 LCKKGNASKA 408


>gi|125539402|gb|EAY85797.1| hypothetical protein OsI_07159 [Oryza sativa Indica Group]
          Length = 506

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 110/213 (51%), Gaps = 12/213 (5%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLNIY 292
           +L++ LR  D   K+L  PN  I   +I      GD   +  +++++R+ N   V  ++ 
Sbjct: 174 ELLADLR--DPRSKYLPQPNTCIYNILIKYYVKKGDLGTAFQVFDEMRNMNCADVRPSLV 231

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNM-QKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
            +++L+        +K   E++++M +K  ++ D  +YN+L+   C  G    AQ I+G 
Sbjct: 232 TYSTLIGGLCRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGF 291

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           ++  E +     + F Y+T++         + A  V E+M+ +GV P+ ++++SL+    
Sbjct: 292 MRKNECEP----NAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLC 347

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
             G V++ ++L +EM Q GC+ +    N+LL+ 
Sbjct: 348 RHGNVDEGINLVQEMWQKGCKADVVTYNLLLEG 380



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 93/213 (43%), Gaps = 10/213 (4%)

Query: 248 KKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAH 303
           +K+   PN +   T+I+  G C  G+   +R ++E++    V  +   + SL+       
Sbjct: 293 RKNECEPNAFNYATLIN--GHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHG 350

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           ++   + + + M + G  AD+ +YN+LL+  C       A  +   ++ L ++GV +L+V
Sbjct: 351 NVDEGINLVQEMWQKGCKADVVTYNLLLEGLCKDRRIAEAVTL---LEKLPSEGV-QLNV 406

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            +Y  ++         + A  +   ML  G  P+    + L+    + G V  A      
Sbjct: 407 ASYRIVMNCLCSCGEMEKAAGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTLYG 466

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           ++  G  P ++C   L+++     +  R+  L 
Sbjct: 467 LVDTGFMPEARCWARLIESVFRERKLRRSIELL 499


>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
 gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
          Length = 651

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 146/351 (41%), Gaps = 35/351 (9%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295
           ++  AL   +   KH  SPN  I   I+D     GD+  +  ++ED+ S  +  +I ++N
Sbjct: 305 NMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYN 364

Query: 296 SLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
            L++    A  +   L V +N++   ++  + +Y  +L      GN   A E++  +K  
Sbjct: 365 ILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIK-- 422

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
                L+  V +Y++++   A A+  + A  +  +ML+ GV P+   +++L    A  G 
Sbjct: 423 --TAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGD 480

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGE 470
           VE+A  +F+ M +     +      LL+AC  +     A  +F+  T   L   Q+    
Sbjct: 481 VEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITYCT 540

Query: 471 DYDGNTDRISNMEHKD------KQSITNTPNFVPNSHYSSF------------------D 506
             DG   R   +E  +      ++  T     + NS  +++                   
Sbjct: 541 MLDGAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKS 600

Query: 507 KRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILI 555
                KP   TYN L++      +  R + L   +  + L P+  +WT L+
Sbjct: 601 SSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALM 651



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 159/373 (42%), Gaps = 50/373 (13%)

Query: 228 VREFG-------KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           +RE+G       +  D V+A   ++A +     PN++I  ++I       D   + A  E
Sbjct: 131 LREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTE 190

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++ SQ + LN  VF S+++   +A + +     ++  +   ++     YN +++A C AG
Sbjct: 191 EMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAG 250

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-------------------AKWW 379
           N    + +  +++    +G L L    Y+T++  FA+                   A   
Sbjct: 251 NMETVEALLAQMEEEGFQGNLGL----YTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNM 306

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
             AL + E+M   GV+PN + ++ +++  A  G    A  ++E+M+ AG +P+    NIL
Sbjct: 307 AKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNIL 366

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
           + A  +A + D+A  +  +   ++    + E Y    D      +  K            
Sbjct: 367 VHAFCKAGRMDKALGVLENIEANRLLPTI-ETYTSILDGYVKGGNIQKA----------- 414

Query: 500 SHYSSFD--KRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
                FD  K    +P   +YN L+   A        + ++NEM   G+ P+   +T L 
Sbjct: 415 --LEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALT 472

Query: 556 DACGGSGNVEGAL 568
           +    +G+VE A 
Sbjct: 473 EGYARTGDVEKAF 485



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 98/191 (51%), Gaps = 6/191 (3%)

Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMAS 326
            G+  K+  I E++    V+ N  ++  +M+  A    FT   +V+++M   G+  D+  
Sbjct: 303 AGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVI 362

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YNIL+ A C AG      +  G ++++EA  +L   + TY++I+  +      Q AL+V 
Sbjct: 363 YNILVHAFCKAGRM---DKALGVLENIEANRLLPT-IETYTSILDGYVKGGNIQKALEVF 418

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           + + +AG+ P  ++++SL++  A A  +E A  +  EML  G  P+ +    L +     
Sbjct: 419 DRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYART 478

Query: 447 CQFDRAFRLFR 457
              ++AF +F+
Sbjct: 479 GDVEKAFGVFQ 489



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 105/232 (45%), Gaps = 10/232 (4%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K  ++  AL  +D  K     P +    +++           +R +  ++ +  V  +  
Sbjct: 407 KGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSER 466

Query: 293 VFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           ++ +L    A   D++    V++ M+K  +  D+ +Y  LLKACC +G    A E++ ++
Sbjct: 467 IYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQI 526

Query: 351 KHLEAKGVLKLDVFTYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
                   LK +  TY T++   +A A   + A ++   M   G  P+T+ ++SLINA  
Sbjct: 527 ----TDAGLKHNQITYCTMLDGAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYG 582

Query: 410 NAGLVEQAMHLFEEMLQAG---CEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            +G  E    L  +M+++     +P+    N L+Q   +A    RA  LF+ 
Sbjct: 583 VSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQG 634



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 52/289 (17%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           Y +L+      G+ V A+  +  ++       +K +V  Y++++  +A+A+  + A+   
Sbjct: 134 YGLLVDFYARHGDKVAARATFEAMRASH----IKPNVHIYTSLIHAYAEARDMEGAVACT 189

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           E+MLS G+  N   + S+I+  A+AG  E A H FE+       P     N ++QA  +A
Sbjct: 190 EEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQA 249

Query: 447 CQFDRAFRLFRSWTLSKTQVALG----------EDYD-----------------GNTDR- 478
              +    L         Q  LG          E  D                 GN  + 
Sbjct: 250 GNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKA 309

Query: 479 ISNMEHKDKQSITNTPN-----FVPNSHYSSFDKRFSFK-----------PTTTTYNILM 522
           +  +E  DK  ++  PN      + + +    D   +FK           P    YNIL+
Sbjct: 310 LDILEEMDKHGVS--PNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILV 367

Query: 523 KACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            A C      KAL  +  +    L P   ++T ++D     GN++ AL+
Sbjct: 368 HAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALE 416


>gi|299471432|emb|CBN79384.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 962

 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 148/352 (42%), Gaps = 47/352 (13%)

Query: 237 LVSALRAYDASKKHLSSPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295
           +V A R + AS++        Y+   +I   G  G++ +  A+  ++  + V  N+Y++N
Sbjct: 4   VVPASRLHQASQRQTEQKQKDYL--HLIKAAGFRGNWREVAALVSEMGGKGVEGNVYIYN 61

Query: 296 SLMNVNAH-----DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           + +   A      + +  L V   +++  +  D  SYN  +      G+   A+ + G +
Sbjct: 62  TAIAAMARCGRPREAEALLTVM--LERDSIAPDTISYNSAINGHARCGDLDAARRLLGRM 119

Query: 351 KHLEAKG-VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
             L + G +L  D FTY+ +    A       A +V + M  AGVTPN IT++S + AC 
Sbjct: 120 TELASGGALLHPDQFTYNAVANAAAKRGDAVAAAEVLKMMAEAGVTPNIITYNSCLAACK 179

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
             G + +A+ L E M + G +P+                        RS++ +     + 
Sbjct: 180 AKGDLRRAVVLLEIMREDGIDPDQ-----------------------RSYSAAIATAGIR 216

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPN--SHYSSFDKRFS---------FKPTTTTY 518
             ++     +  M  +D    T T N      +     D  FS           P   +Y
Sbjct: 217 GLWEEVQGFLETMREEDLTPDTVTFNTAIKAVADNGQCDVAFSLLAEMKNEGLTPDQISY 276

Query: 519 NILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           N ++ AC    ++     L+ +MR  G++PN  +++  +DACG +G    AL
Sbjct: 277 NGVLGACGNAGEWKAALRLLEDMRQAGVTPNAYNYSAAMDACGKAGRQREAL 328



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 109/231 (47%), Gaps = 6/231 (2%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K+ D V+A        +   +PN+    + +  C   GD  ++  + E +R   +  +  
Sbjct: 145 KRGDAVAAAEVLKMMAEAGVTPNIITYNSCLAACKAKGDLRRAVVLLEIMREDGIDPDQR 204

Query: 293 VFNS-LMNVNAHDLKFTLEVY-KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +++ +       L   ++ + + M++  +  D  ++N  +KA    G   +A  +  E+
Sbjct: 205 SYSAAIATAGIRGLWEEVQGFLETMREEDLTPDTVTFNTAIKAVADNGQCDVAFSLLAEM 264

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K+   +G L  D  +Y+ ++    +A  W+ AL++ EDM  AGVTPN   +S+ ++AC  
Sbjct: 265 KN---EG-LTPDQISYNGVLGACGNAGEWKAALRLLEDMRQAGVTPNAYNYSAAMDACGK 320

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           AG   +A+ L   M +AG   ++ C N  + AC  A  +  A +L +   L
Sbjct: 321 AGRQREALALLGHMRKAGVRADTACYNAAIDACSVAMDWTAAVQLLQEMKL 371



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 128/332 (38%), Gaps = 60/332 (18%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +P+      ++  CG  G++  +  + ED+R   VT N Y +++ M+    A   +  L 
Sbjct: 270 TPDQISYNGVLGACGNAGEWKAALRLLEDMRQAGVTPNAYNYSAAMDACGKAGRQREALA 329

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +  +M+K GV AD A YN  + AC +A +   A ++  E+K   A            T  
Sbjct: 330 LLGHMRKAGVRADTACYNAAIDACSVAMDWTAAVQLLQEMKLGVAGAASGGAPGGGGTA- 388

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM------------ 418
                              +     P+ ++++S I ACA A  V++A+            
Sbjct: 389 ------------------GVEVAPPPDVVSYASAITACARARRVDEALGLLSELRVNEAQ 430

Query: 419 -------------HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
                         L +EM+ AG  PN   C+ ++ A     + +RA  L R       +
Sbjct: 431 AAAAAAGDVACGAELLDEMIAAGLRPNKIHCDTMVAAWSAEGKPERAVALMRRLQSHGFE 490

Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525
            +L   Y   T                  N+     + ++      +P+  +++  + AC
Sbjct: 491 PSL---YTYET---------IVWGFAKEANWAAAVRFLAYVLGLGLQPSVRSWDAAIAAC 538

Query: 526 --CTDYYRVKALMNEMRTVGLSPNHISWTILI 555
                + R  AL+ +MR  G+ P+ +++T  +
Sbjct: 539 SQAGHWERALALLADMRKQGIRPSKVTYTAAV 570


>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
 gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
          Length = 700

 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 95/182 (52%), Gaps = 6/182 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEV 311
           P+     T+ID  G  G+  K+ ++Y+  R+    L+   F++L+ +   A +    L V
Sbjct: 244 PDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGNFDGCLNV 303

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y+ M+ LGV  ++  YNILL A   A      ++ Y ++        L     TY+ ++ 
Sbjct: 304 YEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDI----IDNGLSPSFVTYAALLH 359

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +  A++ + A K+  +M   G+  N + ++S++  CA+ G V++A+ +FE+M  +G +P
Sbjct: 360 AYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIKP 419

Query: 432 NS 433
           +S
Sbjct: 420 DS 421



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 8/239 (3%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           D+     +  +G+  ++  AL  YD ++      +     T+I +  + G++     +YE
Sbjct: 246 DVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGNFDGCLNVYE 305

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLA 337
           ++++  V  N+ ++N L++      K   +V K  Q +   G+     +Y  LL A   A
Sbjct: 306 EMKALGVKPNLVIYNILLDAMGR-AKRPWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRA 364

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
                A +IY E+K    KG L L+V  Y++I+ + AD      A+++ EDM S+G+ P+
Sbjct: 365 RYGEDAFKIYREMKE---KG-LGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIKPD 420

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           + T+SS+I   +  G V +A +   EM +AG +PN      L+Q   +A + D     F
Sbjct: 421 SWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVNTF 479



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 133/306 (43%), Gaps = 34/306 (11%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMADMAS 326
           D  K+  +++++  + V  + + F+++++     N  D    +E ++ M   G+  D  +
Sbjct: 191 DLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADK--AVEWFEKMPSFGLEPDDVT 248

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
            + ++ +   AGN   A  +Y   +     G  +LD   +ST+++++  A  +   L V 
Sbjct: 249 LSTMIDSYGRAGNVEKALSLYDRAR----TGEWRLDATAFSTLIRIYKVAGNFDGCLNVY 304

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           E+M + GV PN + ++ L++A   A    Q    +++++  G  P+      LL A   A
Sbjct: 305 EEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRA 364

Query: 447 CQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
              + AF+++R       +  LG +   Y+      +++ H DK                
Sbjct: 365 RYGEDAFKIYR----EMKEKGLGLNVVLYNSILAMCADLGHVDKA-------------VE 407

Query: 504 SFD--KRFSFKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
            F+  K    KP + T++  I + +CC      +  +NEM   G  PN    T LI   G
Sbjct: 408 IFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYG 467

Query: 560 GSGNVE 565
            +  ++
Sbjct: 468 KAQRID 473



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   +R +    +    L  Y+  K     PN+ I   ++D  G      + +  Y+D+ 
Sbjct: 284 FSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDII 343

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              ++ +   + +L++    A   +   ++Y+ M++ G+  ++  YN +L  C   G+  
Sbjct: 344 DNGLSPSFVTYAALLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVD 403

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A EI+ ++K   + G+ K D +T+S+++ +F+       A     +M  AG  PN    
Sbjct: 404 KAVEIFEDMK---SSGI-KPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFIL 459

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
           +SLI     A  ++  ++ F  + +    P+ + C  LL    +
Sbjct: 460 TSLIQCYGKAQRIDDVVNTFNRIFELVITPDDRFCGCLLNVMTQ 503



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 96/234 (41%), Gaps = 38/234 (16%)

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +K  + +     +V  Y+  +KVF   +    A K+ ++ML  GV P+  T+S++I+   
Sbjct: 163 LKFFQERLKFNREVVVYNVTLKVFRKGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCAR 222

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR-----SWTLSKT 464
              L ++A+  FE+M   G EP+    + ++ +   A   ++A  L+       W L  T
Sbjct: 223 LCNLADKAVEWFEKMPSFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDAT 282

Query: 465 QVA-------LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
             +       +  ++DG  +    M                        K    KP    
Sbjct: 283 AFSTLIRIYKVAGNFDGCLNVYEEM------------------------KALGVKPNLVI 318

Query: 518 YNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           YNIL+ A       ++VK    ++   GLSP+ +++  L+ A G +   E A +
Sbjct: 319 YNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRARYGEDAFK 372


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 112/227 (49%), Gaps = 12/227 (5%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           GK  + +  L  ++ S      PN+++  + I      G+ +K+  +++D+    +  + 
Sbjct: 305 GKSEEAMDVLEVFNLS------PNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDC 358

Query: 292 YVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
           + + ++M       D+   L+    M K G+   +A+Y +L+ +CC  GN  +A+ ++  
Sbjct: 359 FSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLF-- 416

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
            + +  +G++  DV +Y+T++  +      Q A ++   M SAGV+P+ +T++ LI+   
Sbjct: 417 -QRMITEGLVP-DVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLI 474

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             GLV +A  + +E+ + G  P+      ++        F+ AF LF
Sbjct: 475 KRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLF 521



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 110/266 (41%), Gaps = 29/266 (10%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           +N  +   C  GN + A +++ ++  +   G++  D F+Y+T++  +   K    ALK  
Sbjct: 326 FNSFISKLCTDGNMLKAAKVFQDMCEM---GLIP-DCFSYTTMMAGYCKVKDISNALKYL 381

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
             ML  G+ P+  T++ LI++C   G +E A +LF+ M+  G  P+    N L+    + 
Sbjct: 382 GKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKK 441

Query: 447 CQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN---- 499
               +AF L    RS  +S   V       G   R    E KD         F P+    
Sbjct: 442 GHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTF 501

Query: 500 -------SHYSSFDKRF---------SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRT 541
                  S+  +F++ F           +P   T + L+   C      +A  L ++M  
Sbjct: 502 TNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLD 561

Query: 542 VGLSPNHISWTILIDACGGSGNVEGA 567
            GL  + I +  LI      GN++ A
Sbjct: 562 AGLKADVILYNSLIHGFCSLGNIDDA 587



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 113/264 (42%), Gaps = 45/264 (17%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K +D+ +AL+      K    P++     +ID C   G+   +  +++ + ++ +  ++ 
Sbjct: 370 KVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVV 429

Query: 293 VFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +N+LMN       L+   E+   M+  GV  D+ +YNIL+      G    A++I  E 
Sbjct: 430 SYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDE- 488

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL---------KVKED------------- 388
             L  +G    DV T++ I+  F++   ++ A           ++ D             
Sbjct: 489 --LTRRG-FSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCR 545

Query: 389 -------------MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
                        ML AG+  + I ++SLI+   + G ++ A HL   M++ G  PN+  
Sbjct: 546 TRCMAEANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNIT 605

Query: 436 CNILL----QACVEACQFDRAFRL 455
            + L+    + CVE      AF+L
Sbjct: 606 HHALVLGYEKKCVENPVERAAFKL 629



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 123/292 (42%), Gaps = 23/292 (7%)

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R  N+   I V NSL+   + +  L    +  K M+  G+  + +  ++ +   C  GN
Sbjct: 177 MRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLKEMKSQGLGLNASIISLFISGYCSQGN 236

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
                ++  E+K+L     +K DV  Y+ ++         + A  +   M   GV  +++
Sbjct: 237 IDTGWKLLMEMKYLG----IKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSV 292

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           + SS+++     G  E+AM + E        PN    N  +          +A ++F+  
Sbjct: 293 SVSSVVDGYCKVGKSEEAMDVLEVF---NLSPNIFVFNSFISKLCTDGNMLKAAKVFQ-- 347

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                ++ L  D    T  ++   +   + I+N   ++         KR   +P+  TY 
Sbjct: 348 --DMCEMGLIPDCFSYTTMMAG--YCKVKDISNALKYL-----GKMLKR-GIRPSVATYT 397

Query: 520 ILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +L+ +CC   +    + L   M T GL P+ +S+  L++  G  G+++ A +
Sbjct: 398 LLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFE 449


>gi|115475155|ref|NP_001061174.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|40253652|dbj|BAD05595.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623143|dbj|BAF23088.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|125602452|gb|EAZ41777.1| hypothetical protein OsJ_26318 [Oryza sativa Japonica Group]
 gi|215695295|dbj|BAG90486.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704436|dbj|BAG93870.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 609

 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 119/317 (37%), Gaps = 89/317 (28%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313
           P+  +   +I +    GDY ++R ++  +  + + L+   FNSLM+    + K    +Y 
Sbjct: 248 PDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFET-NYKEVSSIYD 306

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
            MQ+                                         LK DV +YS ++K +
Sbjct: 307 QMQRT---------------------------------------ALKPDVVSYSLLIKAY 327

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
             A+  + AL V E+ML AGV P   +++ LI+A A +GLVE+A  +F+ M +   EP+ 
Sbjct: 328 GKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDL 387

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
                ++ A V A   D A + FR                    RI              
Sbjct: 388 CSYTTMVLAYVNASDMDGAEKFFR--------------------RI-------------- 413

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISW 551
                        K    KP    Y  LMK      +  RV  +   MR  G+ PN   +
Sbjct: 414 -------------KEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIY 460

Query: 552 TILIDACGGSGNVEGAL 568
           T ++D  G + +   A+
Sbjct: 461 TTIMDVHGRNSDFGNAV 477



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 105/233 (45%), Gaps = 23/233 (9%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           +P + + F N +  F      VS++  YD  ++    P++     +I   G      ++ 
Sbjct: 281 IPLSTVTF-NSLMSFETNYKEVSSI--YDQMQRTALKPDVVSYSLLIKAYGKARREEEAL 337

Query: 277 AIYEDL---------RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASY 327
           A++E++         +S N+ ++ +  + L+   AH       V+K M++  V  D+ SY
Sbjct: 338 AVFEEMLDAGVRPTRKSYNILIDAFAISGLVE-EAHT------VFKAMRRHRVEPDLCSY 390

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             ++ A   A +   A++ +  +K    +  LK +V  Y T++K ++     +  ++V E
Sbjct: 391 TTMVLAYVNASDMDGAEKFFRRIK----EDGLKPNVVVYGTLMKGYSKLNNVERVMRVYE 446

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            M   GV PN   ++++++          A+  F+EM   G   + +  NILL
Sbjct: 447 RMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARGYPADKKAKNILL 499


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 134/319 (42%), Gaps = 59/319 (18%)

Query: 257 YICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           Y C  +++  G+C  G   K++ ++E L    +     ++N+L+N      DL+    ++
Sbjct: 335 YTCSILLN--GLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIF 392

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M+   +  D  +YN L+   C       A+++   V  +E  GV    V T++T++  
Sbjct: 393 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDL---VMEMEKSGV-DPSVETFNTLIDA 448

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +  A   +    V  DM   G+  + I++ S++ A    G + +A+ + ++M+     PN
Sbjct: 449 YGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPN 508

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
           +Q  N ++ A +E+   ++A  L                                     
Sbjct: 509 AQVYNSIIDAYIESGDTEQALLLVEK---------------------------------- 534

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHIS 550
               + NS  S+         +  TYN+L+K  C  +     + L+  +R  GL P+ +S
Sbjct: 535 ----MKNSGVSA---------SIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVS 581

Query: 551 WTILIDACGGSGNVEGALQ 569
           +  +I AC   G+ + AL+
Sbjct: 582 YNTIISACCNKGDTDKALE 600



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 136/331 (41%), Gaps = 72/331 (21%)

Query: 254 PNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--------VNAH 303
           P   I  T+I+  G C   D   +  I+E ++S+++  +   +N+L+N          A 
Sbjct: 367 PTTVIYNTLIN--GYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAE 424

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           DL         M+K GV   + ++N L+ A   AG     ++ +  +  ++ KG+ K DV
Sbjct: 425 DLVM------EMEKSGVDPSVETFNTLIDAYGTAGQL---EKCFTVLSDMQQKGI-KSDV 474

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            ++ ++VK F        A+ + +DM+   V PN   ++S+I+A   +G  EQA+ L E+
Sbjct: 475 ISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEK 534

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M  +G   +    N+LL+    + Q D A  L   +TL                      
Sbjct: 535 MKNSGVSASIVTYNLLLKGLCRSSQIDEAEELI--YTL---------------------- 570

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRT 541
                                  +    +P   +YN ++ ACC   D  +   L+ EM  
Sbjct: 571 -----------------------RNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 607

Query: 542 VGLSPNHISWTILIDACGGSGNVEGALQCRF 572
            G+ P   +   L+ A   +G V   ++C +
Sbjct: 608 YGIRPTLRTCHTLVSALASAGRVHD-MECLY 637



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 99/183 (54%), Gaps = 7/183 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   ++ AI +D+  ++V  N  V+NS+++  + + D +  L + + M+  GV A + +Y
Sbjct: 488 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTY 547

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N+LLK  C +     A+E+   +  L  +G L+ DV +Y+TI+    +      AL++ +
Sbjct: 548 NLLLKGLCRSSQIDEAEEL---IYTLRNQG-LRPDVVSYNTIISACCNKGDTDKALELLQ 603

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M   G+ P   T  +L++A A+AG V     L+++ML    EP+S    I++ A V  C
Sbjct: 604 EMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVR-C 662

Query: 448 QFD 450
           + D
Sbjct: 663 END 665



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 106/265 (40%), Gaps = 29/265 (10%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  ++N +++AC  AG+  +A  +   +   E  G    D F+Y+ ++     +  
Sbjct: 152 GARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSE--GAPPPDAFSYNVVIAGLWRSGK 209

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              ALKV ++M+  GV PN IT++++I+     G +E    L ++ML  G +PN    N+
Sbjct: 210 GSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNV 269

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY----DG--NTDRISNMEHKDKQSITN 492
           LL       + D   R       S + +  G  Y    DG   T     M     +S+  
Sbjct: 270 LLSGLCRTGRMDET-RALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKK 328

Query: 493 T------------PNFVPNSHYSSFDKRF------SFKPTTTTYNILMKACCT--DYYRV 532
                             +   +   + F         PTT  YN L+   C   D    
Sbjct: 329 GVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGA 388

Query: 533 KALMNEMRTVGLSPNHISWTILIDA 557
             +  +M++  + P+HI++  LI+ 
Sbjct: 389 FCIFEQMKSRHIRPDHITYNALING 413



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 66/341 (19%), Positives = 149/341 (43%), Gaps = 35/341 (10%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           +VP   +++   +  + + RDL  A   ++  K     P+      +I+  G+C   M +
Sbjct: 365 LVPTT-VIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN--GLCKLEMVT 421

Query: 276 RA--IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +A  +  ++    V  ++  FN+L++    A  L+    V  +MQ+ G+ +D+ S+  ++
Sbjct: 422 KAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVV 481

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           KA C  G    A  I  ++ + +    +  +   Y++I+  + ++   + AL + E M +
Sbjct: 482 KAFCKNGKIPEAVAILDDMIYKD----VAPNAQVYNSIIDAYIESGDTEQALLLVEKMKN 537

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           +GV+ + +T++ L+     +  +++A  L   +   G  P+    N ++ AC      D+
Sbjct: 538 SGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDK 597

Query: 452 AFRLFRSWTLSKTQVALGEDYD-----GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
           A  L +       +  L   +       +  R+ +ME   +Q +                
Sbjct: 598 ALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHK-------------- 643

Query: 507 KRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLS 545
              + +P+++ Y I++ A   C +  +V +L  EM   G++
Sbjct: 644 ---NVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIA 681



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 104/292 (35%), Gaps = 55/292 (18%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++++    V  N   +N++++  V   DL+    +   M   G   ++ +YN+LL   C
Sbjct: 216 VFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLC 275

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G     + +  E+    A   +  D FTYS +          Q  L +  + L  GV 
Sbjct: 276 RTGRMDETRALMDEM----ASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVM 331

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
               T S L+N     G V +A  +FE ++  G  P +   N L+    +      AF +
Sbjct: 332 LGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCI 391

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           F                                                  K    +P  
Sbjct: 392 FEQM-----------------------------------------------KSRHIRPDH 404

Query: 516 TTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            TYN L+   C      KA  L+ EM   G+ P+  ++  LIDA G +G +E
Sbjct: 405 ITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLE 456


>gi|302787184|ref|XP_002975362.1| hypothetical protein SELMODRAFT_103065 [Selaginella moellendorffii]
 gi|300156936|gb|EFJ23563.1| hypothetical protein SELMODRAFT_103065 [Selaginella moellendorffii]
          Length = 661

 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 168/399 (42%), Gaps = 47/399 (11%)

Query: 189 KELDEEFRIVQLCVNKPDVNLAIRYACIVPRA----DILFCNFVRE-FGKKRDLVSALRA 243
           +E+ +    ++ C    D+  A R    V R+    D    N + E +G+   +  +  A
Sbjct: 49  QEIKDHANRIRQCGRAGDLAEAERVHAAVLRSGLGGDRFLSNLLVEMYGRCGGVEGSRTA 108

Query: 244 YDASKKHLSSPNMY----ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           +DA    + SPN+Y    +   I+++ G CG    +  I+  +  ++V      +N++++
Sbjct: 109 FDA----IESPNVYSDIFLGTAIVNMYGKCGSIHDAEEIFFRMEHRDVV----AWNAMLS 160

Query: 300 VNAHDLKFTLE---VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
             AH+  + LE   +++ M+  GV AD   +  LL+AC   G+    + ++G V  L   
Sbjct: 161 AYAHN-GYELEAAKLFQEMEHEGVKADRVVFVSLLEACSKLGDLEQGKVVHGRVTEL--- 216

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G    DV  ++ +V ++        AL+    +    V+ N ++W+ LI A    GLVE 
Sbjct: 217 GFEAEDVLGHA-LVNLYGKCG----ALEEARSLFGKIVSKNVVSWNVLITAYLQNGLVED 271

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ----------- 465
           A+ LF EM   G  P+    N L+  C      ++A  L R    S+             
Sbjct: 272 ALKLFTEMALDGTRPDDVTFNNLVNLCTGVVSLEQARILHRRLIESEIHVDAVMRNAVMN 331

Query: 466 --VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP----TTTTYN 519
             V  G   D   +    ME +D    T   ++    +  +    F+        + T +
Sbjct: 332 LYVKAGSLEDARAE-FYRMEVRDVIGNTLITSYGQCGNIDASRAVFTGMECKNVISWTSS 390

Query: 520 ILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
           I+  A      +   L+++M   G+ PN ++   LIDAC
Sbjct: 391 IVAHATNGQASQAMGLLHQMHLEGVHPNKVTLLGLIDAC 429



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 136/338 (40%), Gaps = 47/338 (13%)

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316
           +   ++++ G CG   ++R+++  + S+NV + N+ +   L N    D    L+++  M 
Sbjct: 224 LGHALVNLYGKCGALEEARSLFGKIVSKNVVSWNVLITAYLQNGLVED---ALKLFTEMA 280

Query: 317 KLGVMADMASYNILLKACC----LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             G   D  ++N L+  C     L    +L + +     H++A  V++  V         
Sbjct: 281 LDGTRPDDVTFNNLVNLCTGVVSLEQARILHRRLIESEIHVDA--VMRNAVMNLYVKAGS 338

Query: 373 FADAKWWQMALKVKEDMLSAGVTP--------------------NTITWSSLINACANAG 412
             DA+     ++V++ + +  +T                     N I+W+S I A A  G
Sbjct: 339 LEDARAEFYRMEVRDVIGNTLITSYGQCGNIDASRAVFTGMECKNVISWTSSIVAHATNG 398

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE-ACQFDRAFRLFRSWTLSKTQVALGED 471
              QAM L  +M   G  PN      L+ ACV  A   D+     RS  + +  +++   
Sbjct: 399 QASQAMGLLHQMHLEGVHPNKVTLLGLIDACVSLAAAVDKN---ERSIVIPEYVLSVASR 455

Query: 472 YDGNT---DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
           ++        + NM  K           V  +    F+K    +  +  +N ++ A  T+
Sbjct: 456 FESTIVLETALLNMHAKCGN--------VEEAERIFFEKMADGERDSIAWNAMVSAYATN 507

Query: 529 YYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
            + ++A  L   M   G+ P  ++ T ++  C  +G V
Sbjct: 508 GHGLEAIELFYGMVLQGVLPTSVTLTSILSGCSHAGLV 545



 Score = 42.7 bits (99), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 30/169 (17%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D   ++ +V  +A       A+++   M+  GV P ++T +S+++ C++AGLV Q +  F
Sbjct: 493 DSIAWNAMVSAYATNGHGLEAIELFYGMVLQGVLPTSVTLTSILSGCSHAGLVGQGIRYF 552

Query: 422 EEMLQ-AGCEPNSQCCNILLQACVEACQFDRAFRLFR--------SWTLSKTQVALGEDY 472
             M++  G  P +   N L+     A     A  L R        +W +      L  D 
Sbjct: 553 ACMVEDHGVTPTADHMNCLVDLLGRAGWLREAEDLIRKMPAGDPLTWKVLLGACRLHGDL 612

Query: 473 DGNTDR------------------ISNME-HKDKQSITN--TPNFVPNS 500
           +  T+                   +SNM   KD QS+TN  +   VP S
Sbjct: 613 ERGTNAARKASNFLDHCDSSPYVLLSNMYLEKDPQSLTNCESSGLVPTS 661


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 148/330 (44%), Gaps = 41/330 (12%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--L 309
           PN+Y    +I   G C  G+   +   ++++    +  N  V  +L++    +   T   
Sbjct: 549 PNVYTYGALIH--GYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEAT 606

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +++ M    V  D+ +Y+ L+      G    A E+  E   LE KG++  DVFTY++I
Sbjct: 607 SIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEF--LE-KGLVP-DVFTYNSI 662

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  F        A ++ E M   G++PN IT+++LIN    AG +E+A  LF+ +   G 
Sbjct: 663 ISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGL 722

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK--------TQVALGEDYDGNTDRISN 481
             N+     ++    ++    +AFRLF   TL          + +  G   +GNT++  +
Sbjct: 723 AHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALS 782

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEM 539
           +                     S  K F+   +T++ N LM   C     ++A  L+ +M
Sbjct: 783 L------------------FLESVQKGFA---STSSLNALMDGFCKSGKVIEANQLLEDM 821

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               + P+H+++TILID    +G ++ A Q
Sbjct: 822 VDKHVKPDHVTYTILIDYHCKTGFLKEAEQ 851



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 145/357 (40%), Gaps = 62/357 (17%)

Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIY 292
           +DL+S +      KK    P  Y C  II+  G+C  G    +  ++E + S  V  N  
Sbjct: 431 KDLLSEM------KKSNLVPTAYTCGMIIN--GLCRHGSIEDASRVFEIMVSLGVKPNAV 482

Query: 293 VFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           ++ +L+  +  + +F   + + K M K GV  D+  YN ++   C +     A++   E+
Sbjct: 483 IYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEM 542

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
                +G LK +V+TY  ++  +  +   Q+A +  ++ML  G+ PN +  ++LI+    
Sbjct: 543 IE---RG-LKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCK 598

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G   +A  +F  ML     P+ +  + L+   +   +   A  L   + L K  V    
Sbjct: 599 EGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEF-LEKGLV---- 653

Query: 471 DYDGNTDRISNMEHKDKQSITNTPN-FVPNSHYSSFDKRF---------------SFKPT 514
                                  P+ F  NS  S F K+                   P 
Sbjct: 654 -----------------------PDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPN 690

Query: 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             TYN L+   C   +  R + L + +   GL+ N +++  +ID    SGN+  A +
Sbjct: 691 IITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFR 747



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 139/324 (42%), Gaps = 48/324 (14%)

Query: 267 GICGDYMKSRAI------YEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKL 318
           G+  D +K+  +      Y  +   NV  ++Y +  L+N +  A + K    +   M++ 
Sbjct: 206 GLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEK 265

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G    + +YN+++   C AG      E + E+K L  K  L  DVFTYS ++  F   K 
Sbjct: 266 GCSPSLVTYNVVIGGLCRAGEV---DEAF-ELKKLMDKKGLVADVFTYSILIDGFGKQKR 321

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A  + E+M S G+ P  + +++LI+     G   +A  + EEML  G + N    N 
Sbjct: 322 CTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNA 381

Query: 439 LLQACVEACQFDRAFRLFRSWTL------SKTQVALGEDY--DGNTDRISNMEHKDKQSI 490
           L++   +    ++A  L     +      ++T   + E Y  + NT R+ ++  + K+S 
Sbjct: 382 LVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKS- 440

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-----TDYYRVKALMNEMRTVGLS 545
               N V               PT  T  +++   C      D  RV  +   M ++G+ 
Sbjct: 441 ----NLV---------------PTAYTCGMIINGLCRHGSIEDASRVFEI---MVSLGVK 478

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
           PN + +T LI      G  + A++
Sbjct: 479 PNAVIYTTLIKGHVQEGRFQEAVR 502



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 120/310 (38%), Gaps = 26/310 (8%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           +++    +ID  G      +++ + E++ S+ +      + +L++  +   D      V 
Sbjct: 305 DVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVK 364

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M   GV  ++ +YN L+K  C  G+   A  +  E+  +     +K D  TY+ +++ 
Sbjct: 365 EEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVG----IKPDTQTYNNMIEG 420

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +   +       +  +M  + + P   T   +IN     G +E A  +FE M+  G +PN
Sbjct: 421 YLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPN 480

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ---VALGEDYDGNTDRISNMEHKDKQS 489
           +     L++  V+  +F  A R+ +       Q   +       G        E KD   
Sbjct: 481 AVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKD--- 537

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN 547
                      +     +R   KP   TY  L+   C   +         EM   G++PN
Sbjct: 538 -----------YLVEMIER-GLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPN 585

Query: 548 HISWTILIDA 557
            +  T LID 
Sbjct: 586 DVVCTALIDG 595



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 99/221 (44%), Gaps = 7/221 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  + K  +L  A R +D        P+ ++   +ID C   G+  K+ +++ +
Sbjct: 727 VTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLE 786

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
              Q    +    N+LM+      K     ++ ++M    V  D  +Y IL+   C  G 
Sbjct: 787 -SVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGF 845

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A++ + +++    K  L  +  TY+ ++  +  A        + ++M++  + P+ +
Sbjct: 846 LKEAEQFFVDMQ----KRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGV 901

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           TWS +I+A    G   + + L ++ML+ G   +   C++L+
Sbjct: 902 TWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLI 942



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/266 (18%), Positives = 112/266 (42%), Gaps = 36/266 (13%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           + + +  F K+  +  A + ++   +   SPN+     +I+  G+C  G+  ++R +++ 
Sbjct: 659 YNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALIN--GLCKAGEIERARELFDG 716

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  N   + ++++    + +L     ++  M   GV  D   Y+ L+  C   GN
Sbjct: 717 IPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGN 776

Query: 340 TVLAQEIYGEV----------------------KHLEAKGVL--------KLDVFTYSTI 369
           T  A  ++ E                       K +EA  +L        K D  TY+ +
Sbjct: 777 TEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTIL 836

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +       + + A +   DM    + PN +T+++L++    AG   +   LF+EM+    
Sbjct: 837 IDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDI 896

Query: 430 EPNSQCCNILLQACVEACQFDRAFRL 455
           EP+    ++++ A ++     +  +L
Sbjct: 897 EPDGVTWSVMIDAHLKEGDHVKTLKL 922


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 144/343 (41%), Gaps = 44/343 (12%)

Query: 245 DASKKHLSS----PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           DA+++ ++S    P+ Y    II   G+C  G    + A+ +D+  +    ++  +  L+
Sbjct: 126 DAARRLIASMPVPPDAYTYTPIIR--GLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLL 183

Query: 299 NVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                   F   + V   M+  G   ++ +YN+++   C  G    A+EI   +  L + 
Sbjct: 184 EAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEI---LNRLSSY 240

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  + D+ +Y+T++K    A+ W     +  +M+     PN +T+  L+      G+VE+
Sbjct: 241 G-FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVER 299

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVAL 468
           A+ + ++M Q GC PN+  CNI++ A  +  + D A+    +         T+S T V  
Sbjct: 300 AIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLR 359

Query: 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
           G        R    EH  +      P  V          R +  P   T+N  +   C  
Sbjct: 360 G------LCRAGRWEHAKEL----LPEMV----------RKNCPPNEVTFNTFICILCQK 399

Query: 529 YYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               +A  L+  M   G S   +++  L+      G V+ AL+
Sbjct: 400 GLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALE 442



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 113/273 (41%), Gaps = 41/273 (15%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           ++V + M + G   +    NI++ A C  G      + Y  + ++   G    D  +Y+T
Sbjct: 301 IQVLQQMSQHGCTPNTTLCNIVINAICKQGRV---DDAYDFLNNMGMYGC-NPDTISYTT 356

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +++    A  W+ A ++  +M+     PN +T+++ I      GL+EQA+ L E M + G
Sbjct: 357 VLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYG 416

Query: 429 CEPNSQCCNILLQA-CVEACQFDRAFRLFR---------SWTLSKTQVALGEDYDGNTDR 478
           C       N L+   CV+  + D A  LF          ++T   T +   E  D   + 
Sbjct: 417 CSVGIVTYNALVHGFCVQG-RVDSALELFNNLPCEPNTITYTTLLTGLCHAERLDAAAEL 475

Query: 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LM 536
           ++ M  KD                              T+N+L+   C   +  +A  L+
Sbjct: 476 LAGMIQKD------------------------CPLNAVTFNVLVSFFCQKGFVEEAMELV 511

Query: 537 NEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           N+M   G +PN I++  L+D      N E AL+
Sbjct: 512 NQMMEHGCTPNLITFNTLLDGITKDCNSEEALE 544



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 75/382 (19%), Positives = 148/382 (38%), Gaps = 60/382 (15%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID-VC------------- 266
           ++ F   VR F +   +  A++      +H  +PN  +C  +I+ +C             
Sbjct: 281 EVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLN 340

Query: 267 -------------------GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD- 304
                              G+C  G +  ++ +  ++  +N   N   FN+ + +     
Sbjct: 341 NMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKG 400

Query: 305 -LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
            ++  +++ + M + G    + +YN L+   C+ G    A E++  +         + + 
Sbjct: 401 LIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP-------CEPNT 453

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY+T++     A+    A ++   M+      N +T++ L++     G VE+AM L  +
Sbjct: 454 ITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQ 513

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE-DYDGNTDRISNM 482
           M++ GC PN    N LL    + C  + A  L     L    V+L    Y    D +S  
Sbjct: 514 MMEHGCTPNLITFNTLLDGITKDCNSEEALELLHG--LVSKGVSLDTITYSSVVDVLSR- 570

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMR 540
           E + +++I                +    +P    YN ++ A C      +A+     M 
Sbjct: 571 EDRTEEAI----------QMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMV 620

Query: 541 TVGLSPNHISWTILIDACGGSG 562
           + G  PN  ++ ILI+     G
Sbjct: 621 SNGCMPNESTYIILIEGLAHEG 642


>gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730
 gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 58/288 (20%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           S  ++E +RS  +  ++     L+N  V         +++K M KLGV+A++  YN+L+ 
Sbjct: 152 SIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVH 211

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           AC  +G+   A+++  E   +E KGV   D+FTY+T++ V+        AL V++ M  +
Sbjct: 212 ACSKSGDPEKAEKLLSE---MEEKGVFP-DIFTYNTLISVYCKKSMHFEALSVQDRMERS 267

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           GV PN +T++S I+  +  G + +A  LF E ++     N      L+         D A
Sbjct: 268 GVAPNIVTYNSFIHGFSREGRMREATRLFRE-IKDDVTANHVTYTTLIDGYCRMNDIDEA 326

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
            RL                          ME +                         F 
Sbjct: 327 LRLREV-----------------------MESR------------------------GFS 339

Query: 513 PTTTTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDA 557
           P   TYN +++  C D  R++    L+ EM    + P++I+   LI+A
Sbjct: 340 PGVVTYNSILRKLCED-GRIREANRLLTEMSGKKIEPDNITCNTLINA 386



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 9/191 (4%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN-AHDLKF-TLEVY 312
           N+++   ++  C   GD  K+  +  ++  + V  +I+ +N+L++V     + F  L V 
Sbjct: 202 NIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQ 261

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH-LEAKGVLKLDVFTYSTIVK 371
             M++ GV  ++ +YN  +      G    A  ++ E+K  + A  V      TY+T++ 
Sbjct: 262 DRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHV------TYTTLID 315

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +        AL+++E M S G +P  +T++S++      G + +A  L  EM     EP
Sbjct: 316 GYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEP 375

Query: 432 NSQCCNILLQA 442
           ++  CN L+ A
Sbjct: 376 DNITCNTLINA 386



 Score = 42.4 bits (98), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 105/241 (43%), Gaps = 11/241 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + + +F+  F ++  +  A R +   K  +++ N     T+ID  G C   D  ++  + 
Sbjct: 274 VTYNSFIHGFSREGRMREATRLFREIKDDVTA-NHVTYTTLID--GYCRMNDIDEALRLR 330

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E + S+  +  +  +NS++     D  ++    +   M    +  D  + N L+ A C  
Sbjct: 331 EVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKI 390

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            + V A ++  + K +E+   LKLD+++Y  ++  F      + A +    M+  G +P 
Sbjct: 391 EDMVSAVKV--KKKMIESG--LKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPG 446

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             T+S L++   N    ++   L EE  + G   +      L++   +  Q D A  LF 
Sbjct: 447 YATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKVLFE 506

Query: 458 S 458
           S
Sbjct: 507 S 507


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 149/357 (41%), Gaps = 29/357 (8%)

Query: 212 RYACIVPRAD--ILFCNFVREFG-----KKRDLVSALRAYDASKKHLSSPNMYICRTIID 264
           RY  ++PR+   + F   VR FG     K   +   L +++   +    P +++   ++ 
Sbjct: 6   RY--VLPRSIHILFFSQHVRFFGHLHPPKFHTVDDTLLSFNRMLRKHPPPPIFVFDKLLG 63

Query: 265 VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMA 322
                G Y  + +++  L S+ +T +I     L+N   H   L F   +   + K+G   
Sbjct: 64  AIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQP 123

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           +M ++N L+   C+ G    A     +   L AKG   LD F+Y +++         + A
Sbjct: 124 NMVTFNTLINGFCINGMVSKAMAFRLD---LMAKGY-PLDEFSYGSLINGLCKNGQTRDA 179

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           L++ + M    V PN IT+S++I+      L+  A+ LF  +   G   +    N L+  
Sbjct: 180 LQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHG 239

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
           C    Q+  A RL              +DY  N   + +   K+ + +           +
Sbjct: 240 CCSVGQWREATRLLTMMVRGNIN---PDDYTFNI--LVDALCKEGRIVE------AQGVF 288

Query: 503 SSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           +   KR   KP   TYN LM+  C   +    + L N M   GL P+ +++ +LI+ 
Sbjct: 289 AVMMKRGE-KPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLING 344



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 149/369 (40%), Gaps = 67/369 (18%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTL 289
           G+ RD   AL+     ++ L  PN+    T+ID  G+C D + + A+  +  + S+ + +
Sbjct: 174 GQTRD---ALQLLQKMEEDLVRPNLITYSTVID--GLCKDRLIADALRLFSLVTSRGILV 228

Query: 290 NIYVFNSLM----------------------NVNAHDLKFTL---------------EVY 312
           ++  +NSL+                      N+N  D  F +                V+
Sbjct: 229 DVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVF 288

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M K G   D+ +YN L++  CL+ N   A+E++  +     K  L+ DV  Y+ ++  
Sbjct: 289 AVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRM----VKRGLEPDVLNYNVLING 344

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +        A+ + +++    + PN  T++SLI+     G +     L +EM   G  P+
Sbjct: 345 YCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPD 404

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG--EDYDGNTDRISNMEHKDKQSI 490
               NI L A  ++  +++A  LFR       Q+  G   D+      + N    +K  I
Sbjct: 405 IVTYNIFLDAFCKSKPYEKAISLFR-------QIVQGIWPDFYMYDVIVENFCKGEKLKI 457

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNH 548
                     H           P   TY I++ A C D  +     L+++M      P+ 
Sbjct: 458 AEEALQHLLIHGCC--------PNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDA 509

Query: 549 ISWTILIDA 557
           +++  +I A
Sbjct: 510 VTFETIIGA 518



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           ++  +++++R +N+  N+  +NSL++       +    E+   M   G   D+ +YNI L
Sbjct: 353 EAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFL 412

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            A C +     A  ++ ++     +G+   D + Y  IV+ F   +  ++A +  + +L 
Sbjct: 413 DAFCKSKPYEKAISLFRQI----VQGIWP-DFYMYDVIVENFCKGEKLKIAEEALQHLLI 467

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G  PN  T++ +INA       ++AM L  +M    C P++     ++ A  E  + D+
Sbjct: 468 HGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDK 527

Query: 452 AFRL 455
           A +L
Sbjct: 528 AEKL 531


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 150/368 (40%), Gaps = 64/368 (17%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI---YEDLR 283
            +R F    +L   LR ++  +++   PN+    T+I      G Y K + I   ++ LR
Sbjct: 209 LIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVI------GAYCKLKRIDEAFKLLR 262

Query: 284 S---QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           S   + +  N+  +N ++N       ++ T  V   M + G   D  +YN L+   C  G
Sbjct: 263 SMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVG 322

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           N   A  ++ E+     +  L  DV TY++++     A     A++  + M   G+ PN 
Sbjct: 323 NFHQALVLHSEM----LRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNG 378

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +T++SLIN  +  G +++A  +++EM+++G  P     N LL     + + + A  L R 
Sbjct: 379 VTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRG 438

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS-------HYSSFDKRFSF 511
                                  ME K       +P+ V  S        Y   D+ F  
Sbjct: 439 -----------------------MEGKGL-----SPDVVSYSTIIAGFCRYQELDRAFQM 470

Query: 512 K---------PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGG 560
                     P   TY+ L++  C      +A  L  EM    L P+  ++T LI+    
Sbjct: 471 NAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCK 530

Query: 561 SGNVEGAL 568
            G++  AL
Sbjct: 531 EGDLNEAL 538



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/467 (21%), Positives = 195/467 (41%), Gaps = 64/467 (13%)

Query: 109 SMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDS 168
           ++L+  MV +G+    R GRI+   GVL +++  G AP    DG  +  L N   ++   
Sbjct: 272 NLLTYNMVINGLC---RVGRIEETSGVLAEMDRKGFAP----DGVTYNTLVNGYCKV--- 321

Query: 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228
           G     + L   +    LP                 PDV              + + + +
Sbjct: 322 GNFHQALVLHSEMLRNGLP-----------------PDV--------------VTYTSLI 350

Query: 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288
               K  +L  A+  +D        PN     ++I+     G   ++  I++++      
Sbjct: 351 NTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFP 410

Query: 289 LNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
             I  +N+L+N +  +  ++  + + + M+  G+  D+ SY+ ++   C       A ++
Sbjct: 411 PTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQM 470

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
             E   +  KGV   D  TYS++++   + +    A  + ++ML+  + P+  T++SLIN
Sbjct: 471 NAE---MVEKGV-SPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLIN 526

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
                G + +A++L +EM++ G  P++   N+L+    +  +   A RL       ++ +
Sbjct: 527 GYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDES-I 585

Query: 467 ALGEDYDGNTDRISNMEHKD---------KQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
             G  YD   +  S++E K           + + N  + V    + S  KR + KP    
Sbjct: 586 PNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQV----FESMIKR-NQKPNEAV 640

Query: 518 YNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
           YN+++   C D   ++   L  EM   G  P+ ++   L+ A    G
Sbjct: 641 YNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEG 687



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 118/276 (42%), Gaps = 33/276 (11%)

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
           F  +VY+ M   GV  ++ SYNIL++  C AGN  +    + E   +E    L  +V TY
Sbjct: 186 FAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEE---MERNRCLP-NVVTY 241

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++  +   K    A K+   M   G+ PN +T++ +IN     G +E+   +  EM +
Sbjct: 242 NTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDR 301

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDR 478
            G  P+    N L+    +   F +A  L             ++ T +       GN +R
Sbjct: 302 KGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNR 361

Query: 479 ISNMEHKDKQSITN-TPNFVP--------------NSHYSSFDK--RFSFKPTTTTYNIL 521
              ME  D+  +    PN V               +  Y  +D+  R  F PT  TYN L
Sbjct: 362 A--MEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNAL 419

Query: 522 MKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILI 555
           +   C      +A  L+  M   GLSP+ +S++ +I
Sbjct: 420 LNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTII 455



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 54/254 (21%)

Query: 319 GVMADMASYNILLKACCLAGNTVL-AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
           G M  + SYN +L +       V+ A+++Y E   + A GV  L+VF+Y+ +++ F  A 
Sbjct: 162 GFMPGVLSYNAILDSIVRCRKPVIFAEKVYRE---MIASGV-SLNVFSYNILIRGFCAAG 217

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
             +M L+  E+M      PN +T++++I A      +++A  L   M   G EPN    N
Sbjct: 218 NLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYN 277

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
           +++              L R   + +T   L E           M+ K            
Sbjct: 278 MVING------------LCRVGRIEETSGVLAE-----------MDRK------------ 302

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILI 555
                        F P   TYN L+   C   ++++   L +EM   GL P+ +++T LI
Sbjct: 303 ------------GFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLI 350

Query: 556 DACGGSGNVEGALQ 569
           +    +GN+  A++
Sbjct: 351 NTMCKAGNLNRAME 364


>gi|224113637|ref|XP_002316529.1| predicted protein [Populus trichocarpa]
 gi|222859594|gb|EEE97141.1| predicted protein [Populus trichocarpa]
          Length = 678

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 141/297 (47%), Gaps = 19/297 (6%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACC 335
           +Y+++ S     N+  FN +++    D K    L V+  + K G+  ++ ++N+++   C
Sbjct: 225 VYKEMVSYGYMENVNTFNVVVHALCKDCKLQEALSVFYRILKSGIWPNVVTFNMMVDGAC 284

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+  LA ++  +++ + A G +K +  TY++++  F       +A +++ +M+   + 
Sbjct: 285 KMGDMDLALKLVRKMEIMSA-GSIKPNSVTYNSLIDGFCKIGGITVAEELRNEMMKIDIE 343

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN  T++++I   + AG +E+A+ L +EM++ G  PNS   N ++         D A  +
Sbjct: 344 PNVRTYATMIEGYSRAGCLEEALRLCDEMVERGLLPNSVVYNSIMHWLYMEGDVDGASLV 403

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF-DKRFSFKPT 514
           F    +S  Q+ L    D  T  I          IT    F+     ++  +  FS    
Sbjct: 404 FTD--MSDKQIPL----DKFTCSILTRGLCRNGYITTALKFLNQVLENNLIEDAFS---- 453

Query: 515 TTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              +NIL+   C   ++   + L+  M   GL P+ +++  LID     GN+E A+Q
Sbjct: 454 ---HNILINFLCKSNNFAAARQLLARMYVRGLVPDVVTFGTLIDGHCKEGNIESAVQ 507



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 108/238 (45%), Gaps = 15/238 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  + +   L  ALR  D   +    PN  +  +I+    + GD   +  ++ D+ 
Sbjct: 349 YATMIEGYSRAGCLEEALRLCDEMVERGLLPNSVVYNSIMHWLYMEGDVDGASLVFTDMS 408

Query: 284 SQNVTLNIYVFNSLMNVNAHD------LKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
            + + L+ +  + L      +      LKF  +V +N     ++ D  S+NIL+   C +
Sbjct: 409 DKQIPLDKFTCSILTRGLCRNGYITTALKFLNQVLEN----NLIEDAFSHNILINFLCKS 464

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            N   A+++   +  +  +G++  DV T+ T++         + A++V + M+     PN
Sbjct: 465 NNFAAARQL---LARMYVRGLVP-DVVTFGTLIDGHCKEGNIESAVQVYDKMVKGEEKPN 520

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            + ++S+IN     GLV+ A  L + + + G   ++   N L+       +FD+AF+L
Sbjct: 521 LLVYNSIINGLCKDGLVDVARSLVDVLQRMGL-VDTITYNTLINGYFNCGKFDKAFKL 577



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 16/196 (8%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM-- 273
           +VP   + F   +    K+ ++ SA++ YD   K    PN+ +  +II+  G+C D +  
Sbjct: 482 LVPDV-VTFGTLIDGHCKEGNIESAVQVYDKMVKGEEKPNLLVYNSIIN--GLCKDGLVD 538

Query: 274 KSRAIYEDLRS----QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNI 329
            +R++ + L+       +T N  + N   N    D  F L     MQ  G++A  A+YN 
Sbjct: 539 VARSLVDVLQRMGLVDTITYNTLI-NGYFNCGKFDKAFKLSTL--MQNAGILASSATYNT 595

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           ++K  C  G    A+E+   +  +   GVL  D  TY T+V         +  +++ + M
Sbjct: 596 VIKFLCKFGCVQEAKEL---MTMMVLWGVLP-DNITYRTLVININKNCSAEEVIELHDYM 651

Query: 390 LSAGVTPNTITWSSLI 405
           +  GV P+ +T+ +++
Sbjct: 652 VLKGVVPDKLTYENIV 667



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 81/165 (49%), Gaps = 7/165 (4%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYN 328
           ++  +R +   +  + +  ++  F +L++ +  +  ++  ++VY  M K     ++  YN
Sbjct: 466 NFAAARQLLARMYVRGLVPDVVTFGTLIDGHCKEGNIESAVQVYDKMVKGEEKPNLLVYN 525

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            ++   C  G   +A+ +   V  L+  G++  D  TY+T++  + +   +  A K+   
Sbjct: 526 SIINGLCKDGLVDVARSL---VDVLQRMGLV--DTITYNTLINGYFNCGKFDKAFKLSTL 580

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           M +AG+  ++ T++++I      G V++A  L   M+  G  P++
Sbjct: 581 MQNAGILASSATYNTVIKFLCKFGCVQEAKELMTMMVLWGVLPDN 625


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 171/379 (45%), Gaps = 35/379 (9%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P + + + + +  + +   L  AL   +   +    P+++   T++      G    +  
Sbjct: 338 PPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQ 397

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACC 335
           I+E++R++    NI  FN+L+ ++ +  KFT  ++V+++++      D+ ++N LL    
Sbjct: 398 IFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLS--- 454

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
           + G   +  E+ G  K ++  G +  +  T++T++  ++    +  A+ V + ML AGV 
Sbjct: 455 VFGQNGMDSEVSGVFKEMKRAGFVP-ERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVN 513

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+  ++++++ A A  GL +Q+  +  EM    C+PN      LL A     + +R   L
Sbjct: 514 PDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCAL 573

Query: 456 FRS---------WTLSKTQVALGEDYD--GNTDRISNMEHKDKQ------------SITN 492
                         L KT V +    D    T+R + +E + +             SI  
Sbjct: 574 AEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETER-AFLELRQRGFSPDITTLNAMVSIYG 632

Query: 493 TPNFVPNSHYSSFD--KRFSFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNH 548
               V  ++    D  KR  F P+ TTYN L  M +   ++ R + ++ E+   G+ P+ 
Sbjct: 633 RRQMVAKAN-EILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDI 691

Query: 549 ISWTILIDACGGSGNVEGA 567
           IS+  +I A   +G +  A
Sbjct: 692 ISYNTVIYAYCRNGRMRDA 710



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 169/407 (41%), Gaps = 70/407 (17%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP---NMYICRTIIDVCGICGDYMKSRA 277
           D+L    V+  G  +   +ALR ++  +    S    N  I   II + G  G    + +
Sbjct: 129 DVL--GIVKGLGFYKKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAAS 186

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK--- 332
           +  +L      +++Y + S++     + ++   + V+K M+++G    + +YN++L    
Sbjct: 187 LLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYG 246

Query: 333 --------------------------------ACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
                                           +CC  GN  L +E  G +K ++  G   
Sbjct: 247 KMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGN--LYEEAAGVLKEMKLAG-FS 303

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            D  TY+ ++ V+  ++  + A++V ++M   G  P+ +T++SLI+A A  GL+E A+ L
Sbjct: 304 PDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALEL 363

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE-----DYDGN 475
             +M++ G +P+      LL    +A +   A ++F        +  +          GN
Sbjct: 364 KNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGN 423

Query: 476 TDRISNMEH--KDKQSITNTPNFVP-NSHYSSFD---------------KRFSFKPTTTT 517
             + + M    +D ++   +P+ V  N+  S F                KR  F P   T
Sbjct: 424 RGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDT 483

Query: 518 YNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
           +N L+ +   C  + +  A+   M   G++P+  S+  ++ A    G
Sbjct: 484 FNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGG 530



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/222 (18%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           ++ +C+ +  +   +++       +     +  P   + +T++ V   C   M++   + 
Sbjct: 551 ELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFL 610

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           +LR +  + +I   N+++++      +    E+   M++ G    + +YN L+     + 
Sbjct: 611 ELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSA 670

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           N   ++EI   ++ + AKG+ + D+ +Y+T++  +      + A +V  +M  +G  P+ 
Sbjct: 671 NFERSEEI---LREILAKGI-RPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDI 726

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           IT+++ I + A   +  +A+ +   M++ GC+PN    N ++
Sbjct: 727 ITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIV 768



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 7/198 (3%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           I    I PRA +L    V    K   L+   RA+   ++   SP++     ++ + G   
Sbjct: 577 IYSGIIEPRA-VLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQ 635

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYN 328
              K+  I + ++    T ++  +NSLM + +    F  + E+ + +   G+  D+ SYN
Sbjct: 636 MVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYN 695

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            ++ A C  G    A  +  E++          D+ TY+T +  +A    +  A+ V   
Sbjct: 696 TVIYAYCRNGRMRDASRVLSEMRESGPAP----DIITYNTFIASYAADSMFVEAIDVVCY 751

Query: 389 MLSAGVTPNTITWSSLIN 406
           M+  G  PN  T++S+++
Sbjct: 752 MIKHGCKPNQSTYNSIVD 769


>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 143/309 (46%), Gaps = 34/309 (11%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A+Y+D+  + ++ ++ VF + +    +A  LK  L +   M+KL V  ++  YNIL+ A 
Sbjct: 160 ALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAY 219

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK---WWQMALKVKEDMLS 391
              G     +E  G +  +  +G+ + +V TY+ ++  + +AK    + +A  + E+M +
Sbjct: 220 GRVGQL---EEAEGLMTEMRERGI-QPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEA 275

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE-AC--Q 448
           +G+ P+ +T++ L+ A  + GL EQA  +F  M   G +PNS     L+ A  E  C  +
Sbjct: 276 SGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEK 335

Query: 449 FDRAFRLFRSWTLS---KTQVALGEDYD--GNTDRISNMEHKDK---------QSITNTP 494
             RAF + R   ++   +T  AL + Y   G+ + +  +    K           +T   
Sbjct: 336 AARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILD 395

Query: 495 NFVPNSHYSSFD------KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
            F     Y          K    KP    YN+L+ +       VKA  ++ EM+T G  P
Sbjct: 396 AFQKQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAGFLP 455

Query: 547 NHISWTILI 555
           +  ++  LI
Sbjct: 456 DSFTYCTLI 464



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 124/278 (44%), Gaps = 14/278 (5%)

Query: 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
           +++V+N+L+    +  ++ LE+Y N+    V  D  ++++L+ +    G ++  +E++  
Sbjct: 104 SVHVYNTLITCLTNCNRYDLELYHNLAFYEVFPDSVTFSVLMNSAVKGGGSL--KEVWAL 161

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
            + +  +G+    V  + T +K F DA   + AL +  +M    V  N + ++ LI+A  
Sbjct: 162 YQDMVQRGI-SPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYG 220

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
             G +E+A  L  EM + G +PN    N L+   +EA +  R F +            L 
Sbjct: 221 RVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEA-KPKRQFVVAEGLIEEMEASGLY 279

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
            D    T  +    H   + +T     V N       K    +P + +Y  L+ A     
Sbjct: 280 PDVVTFTMLLGAYGH---EGLTEQAEQVFNRM-----KARGVQPNSYSYTALINAYAERR 331

Query: 530 YRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
              KA      +R  G++P   ++T L+DA   +G++E
Sbjct: 332 CPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLE 369



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 18/189 (9%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  + ++R    A RA++  +K   +P +     ++D     GD    +A+++ ++
Sbjct: 320 YTALINAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMK 379

Query: 284 SQNVTLNIYVFNSLMNV--------NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            +        + ++++          A DL   +E +KN    G   D+  YN+LL +  
Sbjct: 380 VEGCVATRVTYMTILDAFQKQGRYKEARDL---IEEFKNQ---GHKPDLMVYNMLLNSYM 433

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G  V A +I  E+K     G L  D FTY T++  F   +    ALK   +M++ G  
Sbjct: 434 RGGRHVKASDILLEMK---TAGFLP-DSFTYCTLIYGFLRVRDQTKALKYHREMMNRGQL 489

Query: 396 PNTITWSSL 404
           P+  T++ L
Sbjct: 490 PDPKTYAKL 498



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 90/215 (41%), Gaps = 6/215 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   +  +G +     A + ++  K     PN Y    +I+         K+   +E 
Sbjct: 283 VTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEM 342

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R Q V   +  + +L++    A DL+    V+K+M+  G +A   +Y  +L A    G 
Sbjct: 343 IRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAFQKQGR 402

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+++  E K+   K     D+  Y+ ++  +        A  +  +M +AG  P++ 
Sbjct: 403 YKEARDLIEEFKNQGHKP----DLMVYNMLLNSYMRGGRHVKASDILLEMKTAGFLPDSF 458

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           T+ +LI          +A+    EM+  G  P+ +
Sbjct: 459 TYCTLIYGFLRVRDQTKALKYHREMMNRGQLPDPK 493


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 134/312 (42%), Gaps = 28/312 (8%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           PN+Y    ++D  G C  G   ++  +  ++ +  +  N   FN L++     H +   +
Sbjct: 422 PNVYSYTILVD--GFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAV 479

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+++ M + G   D+ ++N L+   C       A  +   ++ + ++GV+  +  TY+T+
Sbjct: 480 EIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWL---LRDMISEGVVA-NTVTYNTL 535

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  F      + A K+  +M+  G   + IT++SLI     AG V++A  LFE+ML+ G 
Sbjct: 536 INAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGH 595

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTL--SKTQVALGEDYDGNTDRISNMEHKDK 487
            P++  CNIL+     +   + A    +   L  S   +           R   +E    
Sbjct: 596 APSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
                    +P              P T T+N LM   C   +   A  L++E    G  
Sbjct: 656 MFRKLQAEGIP--------------PDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFV 701

Query: 546 PNHISWTILIDA 557
           PNH +W+IL+ +
Sbjct: 702 PNHRTWSILLQS 713



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 134/285 (47%), Gaps = 23/285 (8%)

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNM-QKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           I +FN+L++  V    L     V  +M    G++ D+ +YN L+      G   LA E+ 
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            ++++   KG  K +V++Y+ +V  F        A  V  +M + G+ PNT+ ++ LI+A
Sbjct: 413 HDMRN---KGC-KPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISA 468

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
                 + +A+ +F EM + GC+P+    N L+    E  +   A  L R   +S+  VA
Sbjct: 469 FCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRD-MISEGVVA 527

Query: 468 LGEDYDGNTDR-ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
               Y+   +  +   E K+ + + N   F      S  D+         TYN L+K  C
Sbjct: 528 NTVTYNTLINAFLRRGEIKEARKLVNEMVF----QGSPLDE--------ITYNSLIKGLC 575

Query: 527 --TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              +  + ++L  +M   G +P++IS  ILI+    SG VE A++
Sbjct: 576 RAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVE 620



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 28/230 (12%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           +FT+  ++K F        AL +  DM   G  PN++ + +LI++ +    V +A+ L E
Sbjct: 217 LFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLE 276

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRA-----------FRLFRSWTLSKTQVALGED 471
           EM   GC P+++  N      +  C+FDR             R F    ++   +  G  
Sbjct: 277 EMFLMGCVPDAETFN---DVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLC 333

Query: 472 YDGNTDRISNMEH---KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
             G  D   ++ +   K +  I NT      +H    D +       T+Y I+   C  +
Sbjct: 334 KIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYN 393

Query: 529 -----YYR------VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                Y++         ++++MR  G  PN  S+TIL+D     G ++ A
Sbjct: 394 SLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 443



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 110/260 (42%), Gaps = 37/260 (14%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY--EDLRS 284
            +  F K+  +  A+  +    +    P++Y   ++I   G+C       A++   D+ S
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLIS--GLCEVDEIKHALWLLRDMIS 522

Query: 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + V  N   +N+L+N  +   ++K   ++   M   G   D  +YN L+K  C AG    
Sbjct: 523 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDK 582

Query: 343 AQEIYG----------------------------EVKHLEAKGVLK---LDVFTYSTIVK 371
           A+ ++                             E    + + VL+    D+ T+++++ 
Sbjct: 583 ARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLIN 642

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               A   +  L +   + + G+ P+T+T+++L++     G V  A  L +E ++ G  P
Sbjct: 643 GLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVP 702

Query: 432 NSQCCNILLQACVEACQFDR 451
           N +  +ILLQ+ +     DR
Sbjct: 703 NHRTWSILLQSIIPQETLDR 722


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 130/305 (42%), Gaps = 27/305 (8%)

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNI 329
           Y    ++Y+ + S  +  N Y  N L+N   H   L F   V  ++ KLG     A++  
Sbjct: 26  YSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTT 85

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           L++  C+ G    A +++ +   +  +G  + DV TY T++      +    AL +  DM
Sbjct: 86  LIRGLCVEGKIGEALQLFDK---MTGEG-FQPDVLTYGTLINGLCKDRQLTEALSLFSDM 141

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEAC- 447
           L+ G++PN  T+SSLI+     G  ++A+ LF  M+     P+    N L+ A C E   
Sbjct: 142 LAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMI 201

Query: 448 -QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH--KDKQSITNTPNFVPNSHYSS 504
              D+A  LF       +Q  L  D       I  + H  + + +I      V       
Sbjct: 202 QIMDKAMGLFEEM----SQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVV------ 251

Query: 505 FDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSG 562
               +   P   TY IL    C ++   +A  L+  +    L P+   ++I++D    +G
Sbjct: 252 ----YGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAG 307

Query: 563 NVEGA 567
            +E A
Sbjct: 308 ELEAA 312



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 88/181 (48%), Gaps = 11/181 (6%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMA 322
           G+C  G   ++  +++ +  +    ++  + +L+N    D + T  L ++ +M   G+  
Sbjct: 89  GLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISP 148

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM- 381
           +  +Y+ L+   C+ G+   A  ++  + H +    +  D  T++T+V         Q+ 
Sbjct: 149 NNFTYSSLIHGLCILGHWKEAIRLFYAMIHRK----IMPDQLTFNTLVDALCKEGMIQIM 204

Query: 382 --ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
             A+ + E+M   G+ P+T+T+++LI+   + G +  A+ LF EM+  G  P+     IL
Sbjct: 205 DKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRIL 264

Query: 440 L 440
            
Sbjct: 265 F 265



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 21/196 (10%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM-----KSRAIYEDLRSQNVTLNIYVF 294
           A+R + A       P+     T++D   +C + M     K+  ++E++  Q +  +   +
Sbjct: 169 AIRLFYAMIHRKIMPDQLTFNTLVD--ALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTY 226

Query: 295 NSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACC----LAGNTVLAQEIYG 348
           N+L++   H   L+  + ++  M   G + D+ +Y IL    C    LA   VL + I G
Sbjct: 227 NTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEG 286

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
                     L  D+  YS ++     A   + A  +   + S G+ P+  T++ +IN  
Sbjct: 287 TN--------LDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGL 338

Query: 409 ANAGLVEQAMHLFEEM 424
              GL+ +A  LF EM
Sbjct: 339 CQQGLLAEASKLFGEM 354


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 108/210 (51%), Gaps = 10/210 (4%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRS 284
           ++R+  ++  +  A + ++  K H   PN+Y    +ID  G C  G+  ++  +Y+++  
Sbjct: 274 YIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMID--GYCKTGNLRQAYGLYKEILV 331

Query: 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
             +  N+ VF +L++    A +L     ++ +M K GV  ++  YN L+   C +GN + 
Sbjct: 332 AELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLE 391

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A  +  E++ L     L  DVFTY+ ++      +    A ++ + M +  + P+++T++
Sbjct: 392 AMGLLSEMESLN----LSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYN 447

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           SLI+       +E+A+ L  EM  +G EPN
Sbjct: 448 SLIHGFCKEYNIEKALDLCSEMTSSGVEPN 477



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 107/215 (49%), Gaps = 6/215 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           ++F   V  F K R+LV+A   +    K    PN+Y+   +I      G+ +++  +  +
Sbjct: 339 VVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSE 398

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S N++ +++ +  L+N       L     +++ M+   +     +YN L+   C   N
Sbjct: 399 MESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYN 458

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++  E   + + GV + ++ T+ST++  +   +  + A+ +  +M   G+ P+ +
Sbjct: 459 IEKALDLCSE---MTSSGV-EPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVV 514

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           T+++LI+A      +++A+ L+ +ML+AG  PN  
Sbjct: 515 TYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDH 549



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 121/286 (42%), Gaps = 29/286 (10%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y+ M   G++ D+  Y++L + C   G     +++  E+  L   GV K +V+ Y+  ++
Sbjct: 221 YQLMISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSL---GV-KPNVYIYTIYIR 276

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                   + A K+ E M   GV PN  T+S++I+     G + QA  L++E+L A   P
Sbjct: 277 DLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLP 336

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL--------GEDYDGN----TDRI 479
           N      L+    +A +   A  LF           L        G+   GN       +
Sbjct: 337 NVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLL 396

Query: 480 SNMEHKDKQSITNTPNFVPNS-----HYSSFDKRFS------FKPTTTTYNILMKACCTD 528
           S ME  +      T   + N        +  ++ F         P++ TYN L+   C +
Sbjct: 397 SEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKE 456

Query: 529 YYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
           Y   KA  L +EM + G+ PN I+++ LID      N++ A+   F
Sbjct: 457 YNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYF 502



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 45/227 (19%), Positives = 98/227 (43%), Gaps = 15/227 (6%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYM 273
           I P + + + + +  F K+ ++  AL            PN+    T+ID  G C   +  
Sbjct: 439 IFP-SSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLID--GYCKVRNIK 495

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLKFTLEVYKNMQKLGVMADMASYNI 329
            +  +Y ++  + +  ++  + +L  ++AH    ++K  L +Y +M + G+  +  ++  
Sbjct: 496 AAMGLYFEMTIKGIVPDVVTYTTL--IDAHFKEANMKEALRLYSDMLEAGIHPNDHTFAC 553

Query: 330 LLKACCLAGNTVLAQEIYGEVKHL-EAKGVLKLDVFTY---STIVKVFADAKWWQMALKV 385
           L+      G    A + Y E       K +++   + Y   + +++      +   A + 
Sbjct: 554 LVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRF 613

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
             DM S GVTP+  ++ S++ A      +   M L  +M++ G  PN
Sbjct: 614 FSDMKSGGVTPDIWSYVSMLKAHLREKRITDTMMLHCDMIKTGILPN 660


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 145/347 (41%), Gaps = 46/347 (13%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS---QNVTLNIYVFNS 296
            LR +   +++   PN+    T+ID  G C    ++   +  LRS   + +  N+  FN 
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMID--GYC-KLKRTDEAFGFLRSMGLKGLEPNLITFNM 58

Query: 297 LMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           ++N    D  LK T EV   M + G + D  +YN L+   C  GN   A  ++ E+    
Sbjct: 59  IINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEM---- 114

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            +  L  +V TY++++     A     A++  + M   G+ PN  T++++IN  A  GL+
Sbjct: 115 VRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLL 174

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG 474
           ++A  +  EM ++G  P+    N L+       + + A  L +                 
Sbjct: 175 DEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQ----------------- 217

Query: 475 NTDRISNMEHKDKQSI-TNTPNFVPNSHYSSFDKRFSFK---------PTTTTYNILMKA 524
             D +      D  S  T    F  N      D+ F  K         P   TY+ L++ 
Sbjct: 218 --DMVGKGVLPDVVSYSTIISGFARN---QELDRAFQMKVEMIGKSVLPDAVTYSSLIQG 272

Query: 525 CCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            C      +A  +  EM T+ L P+  ++T LI+A    G++  AL 
Sbjct: 273 LCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALH 319



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 155/382 (40%), Gaps = 52/382 (13%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           ++ +   V  + K+ +   AL  +    ++  SPN+    ++I+     G+  ++   ++
Sbjct: 88  EVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFD 147

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +  + +  N   + +++N  A    L     V   M + G +  + +YN L+   C+ G
Sbjct: 148 QMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLG 207

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
                +E  G ++ +  KGVL  DV +YSTI+  FA  +    A ++K +M+   V P+ 
Sbjct: 208 RM---EEAIGLLQDMVGKGVLP-DVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDA 263

Query: 399 ITWSSLI-----------------------------------NACANAGLVEQAMHLFEE 423
           +T+SSLI                                   NA    G + +A+HL +E
Sbjct: 264 VTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDE 323

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M+Q G  P++   N+L+    +  +   A RL        + +     Y+   +   N+E
Sbjct: 324 MIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDS-IPSAVTYNTLIENCCNIE 382

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRF------SFKPTTTTYNILMKACCTDYYRVKA--L 535
            K   ++     F         D+ F      + KP    YN+++   C     +KA  L
Sbjct: 383 FKSAVALVK--GFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKL 440

Query: 536 MNEMRTVGLSPNHISWTILIDA 557
             EM  V   P+ ++   L+ A
Sbjct: 441 YKEMVHVDFVPHTVTVLALVKA 462


>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 121/270 (44%), Gaps = 31/270 (11%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN++++       T  A+ ++ E++    K     DV TY+ I+     A  W+ A+ + 
Sbjct: 154 YNMMIRLHARHNRTDQARGLFFEMQEWRCKP----DVETYNAIINAHGRAGQWRWAMNIM 209

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           +DML A + P+  T+++LINAC ++G  ++A+++ ++M + G  P+    NI+L A    
Sbjct: 210 DDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSG 269

Query: 447 CQFDRA---FRLFRSWTLSKTQVALG---------EDYDGNTDRISNMEHKDKQSITNTP 494
            Q+ +A   F L +   +      L            YD   +  ++M  K  +   +  
Sbjct: 270 AQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVV 329

Query: 495 NFVPNSH-YS----------SFDKRFS--FKPTTTTYNILMKACCTDYYRVKA--LMNEM 539
            F    H YS          +F+   +   KP   +YN L+ A        +A    NE+
Sbjct: 330 TFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEI 389

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +  G  P+ +S+T L++A G S     A Q
Sbjct: 390 KQNGFRPDIVSYTSLLNAYGRSQKPHKARQ 419



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 102/236 (43%), Gaps = 10/236 (4%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  +G    L  A++     ++    PN+    T++  CG C   +K   +      + 
Sbjct: 439 LIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRG 498

Query: 287 VTLNIYVFN----SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + LN   +N    S MNV  +D    L  YK+M+K  +  D  +Y +L+  CC       
Sbjct: 499 IKLNTVAYNAAIGSCMNVGEYDKAIGL--YKSMRKKKIKTDSVTYTVLISGCCKMSKYGE 556

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A     E+ HL+    L L    YS+ +  ++       A      M S+G  P+ +T++
Sbjct: 557 ALSFMEEIMHLK----LPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYT 612

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           ++++A   A   E+A  LFEEM  +  + ++  C  L+++  +  Q  R   L  S
Sbjct: 613 AMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAES 668



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 128/314 (40%), Gaps = 26/314 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P++     II+  G  G +  +  I +D+    +  +   +N+L+N   ++ + K  L V
Sbjct: 184 PDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNV 243

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            K M + GV  D+ ++NI+L A         A   +  +K       ++ D  T + ++ 
Sbjct: 244 CKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTH----IRPDTTTLNIVIH 299

Query: 372 VFADAKWWQMALKVKEDMLS--AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
                + +  A+++   M    +  TP+ +T++S+I+  +  G VE     F  M+  G 
Sbjct: 300 CLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGL 359

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +PN    N L+ A       + A   F        Q     D    T  ++      K  
Sbjct: 360 KPNIVSYNALIGAYAARGMDNEAHLFFNE----IKQNGFRPDIVSYTSLLNAYGRSQK-- 413

Query: 490 ITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLS 545
                   P+     FD  KR   KP   +YN L+ A  ++     A+  + EM   G+ 
Sbjct: 414 --------PHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQ 465

Query: 546 PNHISWTILIDACG 559
           PN +S   L+ ACG
Sbjct: 466 PNVVSICTLLAACG 479



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 111/289 (38%), Gaps = 59/289 (20%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  ++ SYN L+ A    G    A   + E+K    +   + D+ +Y++++  +  ++ 
Sbjct: 358 GLKPNIVSYNALIGAYAARGMDNEAHLFFNEIK----QNGFRPDIVSYTSLLNAYGRSQK 413

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A ++ + M    + PN +++++LI+A  + GL+  A+ +  EM Q G +PN      
Sbjct: 414 PHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICT 473

Query: 439 LLQAC---VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
           LL AC       + D          +    VA    Y+       N+   DK        
Sbjct: 474 LLAACGRCSRKVKIDTVLTAAEMRGIKLNTVA----YNAAIGSCMNVGEYDKAI------ 523

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNE--------------- 538
                 Y S  K+   K  + TY +L+  CC  + Y    + M E               
Sbjct: 524 ----GLYKSMRKK-KIKTDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSS 578

Query: 539 --------------------MRTVGLSPNHISWTILIDACGGSGNVEGA 567
                               M++ G  P+ +++T ++DA   + N E A
Sbjct: 579 AICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKA 627



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/264 (18%), Positives = 112/264 (42%), Gaps = 47/264 (17%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           +R++ K  ++ +++R     KK   +P++    +II +  +CG      A +  + ++ +
Sbjct: 304 LRQYDKAIEIFNSMR----EKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGL 359

Query: 288 TLNIYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
             NI  +N+L+   A    D +  L  +  +++ G   D+ SY  LL A   +     A+
Sbjct: 360 KPNIVSYNALIGAYAARGMDNEAHL-FFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKAR 418

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN------- 397
           +I+  +K    +  LK ++ +Y+ ++  +        A+K+  +M   G+ PN       
Sbjct: 419 QIFDRMK----RNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTL 474

Query: 398 ----------------------------TITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
                                       T+ +++ I +C N G  ++A+ L++ M +   
Sbjct: 475 LAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKI 534

Query: 430 EPNSQCCNILLQACVEACQFDRAF 453
           + +S    +L+  C +  ++  A 
Sbjct: 535 KTDSVTYTVLISGCCKMSKYGEAL 558


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 171/406 (42%), Gaps = 55/406 (13%)

Query: 176 GLMEVLEEF--RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL-----FCNFV 228
           G++  +E    R+PV+ L     ++    +  D+  A R+   + RA +      + +FV
Sbjct: 57  GMLSDMESLAARMPVRNLHTYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFV 116

Query: 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC----GICGDYM--KSRAIYEDL 282
             + +      A R +      L  P     RT         G+CG  M  ++ A++  +
Sbjct: 117 LGYCRTGLFAHACRLF------LLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGM 170

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
                  + +V++ +++    A      + +  +    G + ++A YN L+   C  G+ 
Sbjct: 171 WPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDL 230

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
            LA +I+   K +++KG L  +V TY+ ++  F  +   + A+ +   M+ AG+ PN +T
Sbjct: 231 ELAIDIF---KGMQSKGCLP-NVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVT 286

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +++LI    + G +E A  L   M   G  PN   C +L+ A  +  + + A +   S  
Sbjct: 287 YTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLV 346

Query: 461 ---LSKTQVALGEDYD-----GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
              +   QV      D     G  D   N+  K       T  FVP++H           
Sbjct: 347 QKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQK-----IITEGFVPDAH----------- 390

Query: 513 PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILID 556
                Y+ L+   C +   ++A  L+N+M   G+  N + +TILID
Sbjct: 391 ----MYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILID 432



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 144/337 (42%), Gaps = 37/337 (10%)

Query: 263 IDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           I V G+CG      A+    D   +    N+ V+N+L++   +  DL+  ++++K MQ  
Sbjct: 184 IMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSK 243

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G + ++ +Y  L+   C +G    A  +Y  +  +EA   L  +V TY+T+++       
Sbjct: 244 GCLPNVRTYTQLICGFCKSGKVERAMVLYSRM--IEAG--LAPNVVTYTTLIQGQCSEGH 299

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            + A ++   M + G+ PN  T   LI+A    G +E+A      ++Q G + N      
Sbjct: 300 LEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTS 359

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT------- 491
           ++ A  ++ +FD A  L +   +++  V     Y    D +   E+K  ++I+       
Sbjct: 360 MIDALCKSGKFDGAHNLMQK-IITEGFVPDAHMYSSLIDGLCR-ENKLLEAISLLNDMIE 417

Query: 492 --NTPNFVP-----NSHYSSF----DKRFS-------FKPTTTTYNILMKACCTD--YYR 531
                N VP     + H   F     K  S        KP   TY + +++ C D     
Sbjct: 418 SGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMED 477

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            +++M +M   G+ PN  ++  LI      G V  A 
Sbjct: 478 AESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAF 514



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 35/222 (15%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312
           +PN + C  +ID     G   +++     L  + + +N  ++ S+++      KF    +
Sbjct: 316 APNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFD-GAH 374

Query: 313 KNMQKL---GVMADMASYNILLKACCLAGNTVLAQEIYGEV-----------------KH 352
             MQK+   G + D   Y+ L+   C     + A  +  ++                 KH
Sbjct: 375 NLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKH 434

Query: 353 LE--------------AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           L               A   +K DV TY+  ++ +      + A  +   M+  GV PN 
Sbjct: 435 LREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNL 494

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            T+++LI   AN GLV QA    + M+  GC+PN +   +LL
Sbjct: 495 TTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLL 536


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 158/352 (44%), Gaps = 37/352 (10%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           R  R    + +L K+ +LG  P  +  GS   LL   CQ        +  V L++ + E 
Sbjct: 662 RCSRFSLALALLGKMMKLGFQPSIVTLGS---LLNGFCQ----GNRFQEAVSLVDSMAEL 714

Query: 185 RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL------------FCNFVREFG 232
            L    +     I  LC N+ D+N A+     + +  I+             CN     G
Sbjct: 715 GLEPNVVIYNTVINGLCKNR-DLNNALEIFYGMEKKGIVADAVTYNTLISGLCNS----G 769

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           +  D    LR  D  K+ +  PN+     +ID     G+ ++++ +Y+++  ++V  NI 
Sbjct: 770 RWTDAARLLR--DMVKRKID-PNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNIL 826

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKL----GVMADMASYNILLKACCLAGNTVLAQEIYG 348
            +NSL  +N   ++  L   K+M  L    G   D+ +YN L+   C +       +++ 
Sbjct: 827 TYNSL--INGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFC 884

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E+ H    G    D FTY+T++  +  A    +A KV   M+  GV P+ +T++ L++  
Sbjct: 885 EMTHQGLVG----DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCL 940

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
            N G +E+A+ + E++ +   + +    NI++Q      +   A+ LFRS T
Sbjct: 941 CNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLT 992



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 7/171 (4%)

Query: 290 NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEI 346
           N+ V+N+L++      D+   LE+   M+K G + AD+ +YN LL   C +G    A  I
Sbjct: 169 NVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARI 228

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
             ++     K  +  DVFT++ ++  F        A ++ + ML + + PNT+T++SLIN
Sbjct: 229 LRDM----TKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLIN 284

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
                G +  A   F+ M   GC PN    N L+    ++ + +   +LF+
Sbjct: 285 GLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQ 335



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 117/257 (45%), Gaps = 17/257 (6%)

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
           +M K G   ++  YN L+   C  G+  +A E+  E   +E KG L  D+ TY+T++   
Sbjct: 160 SMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNE---MEKKGRLAADLVTYNTLLTGL 216

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
             +  W+ A ++  DM    + P+  T+++LI+A    G +++A  L+++MLQ+   PN+
Sbjct: 217 CYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNT 276

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
              N L+      C   R +   +++ L  ++         NT  + N   K ++     
Sbjct: 277 VTYNSLING---LCMHGRLYHAKKTFDLMASKGCFPNVVTYNT--LINGFCKSRRVEDGM 331

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRV-KALMNEMRTVGLSPNHISW 551
             F     Y     R      T TYN L+   C     RV K + + M + G++P+ I+ 
Sbjct: 332 KLF--QRMY-----REGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITH 384

Query: 552 TILIDACGGSGNVEGAL 568
            IL+     +G +  A+
Sbjct: 385 CILLHGLCVNGEIGSAM 401



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 37/289 (12%)

Query: 294 FNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           F  L+   A+  ++   +Y  + M+  G+  D+ S+ IL+   C      LA  I G++ 
Sbjct: 68  FTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSRLSLALSILGKMM 127

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            L         + T+ +++  F        A  +   M+ +G  PN + +++LI+     
Sbjct: 128 KLGYDP----SIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKN 183

Query: 412 GLVEQAMHLFEEMLQAG-CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK------T 464
           G V  A+ L  EM + G    +    N LL     + ++ +A R+ R  T  +      T
Sbjct: 184 GDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFT 243

Query: 465 QVALGEDY--DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
             AL + +   GN D    +  +  QS                    S  P T TYN L+
Sbjct: 244 FTALIDAFVKQGNLDEAQELYKQMLQS--------------------SIGPNTVTYNSLI 283

Query: 523 KACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              C     Y  K   + M + G  PN +++  LI+    S  VE  ++
Sbjct: 284 NGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMK 332



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 113/280 (40%), Gaps = 22/280 (7%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           V  ++  +N  D+   + ++  M+ LG+  D+ S+ IL+   C      LA  + G++  
Sbjct: 621 VLTAIAKMNKFDI--VIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMK 678

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANA 411
           L      +  + T  +++  F     +Q A+ + + M   G+ PN + ++++IN  C N 
Sbjct: 679 LG----FQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNR 734

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
            L   A+ +F  M + G   ++   N L+     + ++  A RL R     K        
Sbjct: 735 DL-NNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKI------- 786

Query: 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--Y 529
            D N    + +      +     N +   +      R S  P   TYN L+   C     
Sbjct: 787 -DPNVIFFTAL----IDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRL 841

Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              K + + M + G  P+ +++  LI     S  VE  ++
Sbjct: 842 GDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMK 881



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 106/227 (46%), Gaps = 9/227 (3%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           G+ R     LR  D +K+ ++ P+++    +ID     G+  +++ +Y+ +   ++  N 
Sbjct: 220 GEWRQAARILR--DMTKRRIN-PDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNT 276

Query: 292 YVFNSLMN-VNAHD-LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             +NSL+N +  H  L    + +  M   G   ++ +YN L+   C +       +++  
Sbjct: 277 VTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLF-- 334

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
            + +  +G++  D FTY+T++  +      ++A  +   M+S GVTP+ IT   L++   
Sbjct: 335 -QRMYREGLVG-DTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLC 392

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             G +  AM  F +M            NI++    +A + + A+ LF
Sbjct: 393 VNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELF 439



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 96/209 (45%), Gaps = 6/209 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I F   +  F K+ +L+ A   Y    +    PN+    ++I+   I G    ++ +++ 
Sbjct: 791 IFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDL 850

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S+    ++  +N+L+     +  ++  ++++  M   G++ D  +YN L+   C AG 
Sbjct: 851 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGK 910

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             +AQ+++  +        +  D+ TY+ ++    +    + AL + ED+    +  + I
Sbjct: 911 LNVAQKVFNRM----VDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDII 966

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAG 428
           T++ +I        V++A  LF  + + G
Sbjct: 967 TYNIIIQGMCRNDKVKEAWCLFRSLTRKG 995



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 105/238 (44%), Gaps = 10/238 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           F   +  F K+ +L  A   Y    +    PN     ++I+  G+C  G    ++  ++ 
Sbjct: 244 FTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLIN--GLCMHGRLYHAKKTFDL 301

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S+    N+  +N+L+N    +  ++  +++++ M + G++ D  +YN L+   C  G 
Sbjct: 302 MASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGK 361

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             +A++I+     + + GV   D+ T+  ++           A+    DM S       +
Sbjct: 362 LRVAKDIF---SWMVSCGVTP-DIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIV 417

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            ++ +I+    A  VE+A  LF  +   G +P+++   I++    +      A  LFR
Sbjct: 418 AYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFR 475


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 125/258 (48%), Gaps = 26/258 (10%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAI 278
           +IL C + ++  +K D V  +  +   ++   +PN    RT+ID  G+C  G    +   
Sbjct: 186 NILICAYTKQ--EKVDEV--VLVFSKMRQQGLTPNAVNYRTVID--GLCKLGRLDDAMLN 239

Query: 279 YEDLRSQNVTLNIYVFNSLMNV--------NAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           +E +  + +T N+ V+ SL++          A +L F       +   G+  ++  +N +
Sbjct: 240 FEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIF------EILDQGINPNIVFFNTI 293

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           L + C  G  + +++++  + H+   GV   DV TYST++  +  A     A+K+   M+
Sbjct: 294 LDSLCKEGRVIESKKLFDLLGHI---GV-NPDVITYSTLIDGYCLAGKMDGAMKLLTGMV 349

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
           S G+ P+++T+S+LIN       +E A+ LF+EM   G  P+    NI+L       +  
Sbjct: 350 SVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTA 409

Query: 451 RAFRLFRSWTLSKTQVAL 468
            A  L+   T S TQ+ L
Sbjct: 410 AAKELYARITESGTQLEL 427



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 151/345 (43%), Gaps = 39/345 (11%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P++    TIID     GD  K+   Y ++  + V+ +   +NS++     A  +   +EV
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M    VM +  +YN ++   C +G    +++  G  + + + G+ + DV TY++++ 
Sbjct: 69  LTVM----VMPNCFTYNSIMHGYCSSGQ---SEKAIGIFRKMCSDGI-EPDVVTYNSLMD 120

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                     A K+ + M+  G+ P+  T+ +L++  A+ G + +   L   M+Q G + 
Sbjct: 121 YLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQL 180

Query: 432 NSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDGN------TDRISNM 482
           +    NIL+ A  +  + D    +F   R   L+   V      DG        D + N 
Sbjct: 181 DHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNF 240

Query: 483 EHKDKQSITNTPNFVPNSH-------YSSFDK---------RFSFKPTTTTYNILMKACC 526
           E    + +T  PN V  +        Y  ++K              P    +N ++ + C
Sbjct: 241 EQMIDKGLT--PNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLC 298

Query: 527 TDYYRV--KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +   +  K L + +  +G++P+ I+++ LID    +G ++GA++
Sbjct: 299 KEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMK 343



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 131/321 (40%), Gaps = 24/321 (7%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--L 309
           PN +   +I+   G C  G   K+  I+  + S  +  ++  +NSLM+    + K T   
Sbjct: 75  PNCFTYNSIMH--GYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEAR 132

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +++ +M K G+  D+ +Y  LL      G  V   ++      L  +  ++LD   ++ +
Sbjct: 133 KIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLA----LMVQNGMQLDHHVFNIL 188

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +   +     + V   M   G+TPN + + ++I+     G ++ AM  FE+M+  G 
Sbjct: 189 ICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGL 248

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            PN      L+ A    C +D+       W   K +  + E  D   +      +    S
Sbjct: 249 TPNVVVYTSLIHAL---CTYDK-------W--EKAEELIFEILDQGINPNIVFFNTILDS 296

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
           +      + +             P   TY+ L+   C       A  L+  M +VGL P+
Sbjct: 297 LCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPD 356

Query: 548 HISWTILIDACGGSGNVEGAL 568
            ++++ LI+       +E AL
Sbjct: 357 SVTYSTLINGYCKINRMEDAL 377



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 99/209 (47%), Gaps = 6/209 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           +PN+ +  ++I        + K+  +  ++  Q +  NI  FN++++    + +   + +
Sbjct: 249 TPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKK 308

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  +  +GV  D+ +Y+ L+   CLAG    A ++   +  + + G LK D  TYST++
Sbjct: 309 LFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKL---LTGMVSVG-LKPDSVTYSTLI 364

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +      + AL + ++M S GV P+ IT++ +++          A  L+  + ++G +
Sbjct: 365 NGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQ 424

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSW 459
                 NI+L    +       F  FR++
Sbjct: 425 LELSTYNIILMDFAKTNSLMMHFGCFRTY 453


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 152/357 (42%), Gaps = 30/357 (8%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           +EG++     +  ++ + G+ P  +   S   L+   C+    SG +E    L  V+EEF
Sbjct: 244 KEGKVKDAQLIFDEIRKTGLQPTAV---SFNTLINGYCK----SGNLEEGFRLKMVMEEF 296

Query: 185 RLPVKELDEEFRIVQLC--VNKPDVNLAIRYAC---IVPRADILFCNFVREFGKKRDLVS 239
           R+          I  LC      D N   +  C   +VP  D+ F   +    K   +  
Sbjct: 297 RVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPN-DVTFTTLINGQCKNGRVDL 355

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           AL  Y          ++ +  T+ID  G+C  G + ++R    ++  + +  + + + +L
Sbjct: 356 ALEIYQQMFTKGLKADLVLYNTLID--GLCKGGYFREARKFVGEMTKRGLIPDKFTYTTL 413

Query: 298 MNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++ +    DL+  LE+ K M K G+  D  ++  ++   C  G  V A+    E+     
Sbjct: 414 LDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREM----L 469

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +  LK D  TY+ ++  F      +M  K+ ++M S G  P  IT++ L+N     G V+
Sbjct: 470 RAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVK 529

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            A  L   ML  G  P+    NILLQ     C+  +       +   KT++ L  DY
Sbjct: 530 NADMLLNAMLNLGVVPDDITYNILLQG---HCKHGK----LGDFQNVKTEMGLVSDY 579



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/353 (20%), Positives = 147/353 (41%), Gaps = 60/353 (16%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           IR   + P A + F   +  + K  +L    R     ++    P+++    +ID  G+C 
Sbjct: 258 IRKTGLQPTA-VSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALID--GLCK 314

Query: 271 DYMKSRA--IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMAS 326
           +     A  +++++  + +  N   F +L+N    +  +   LE+Y+ M   G+ AD+  
Sbjct: 315 ECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVL 374

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN L+   C  G    A++  GE   +  +G++  D FTY+T++         ++AL+++
Sbjct: 375 YNTLIDGLCKGGYFREARKFVGE---MTKRGLIP-DKFTYTTLLDGSCKEGDLELALEMR 430

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           ++M+  G+  + + ++++I+     G +  A     EML+AG +P+     +++    + 
Sbjct: 431 KEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKK 490

Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
                 F+L                             K+ QS  + P  +         
Sbjct: 491 GDVKMGFKLL----------------------------KEMQSDGHIPGVI--------- 513

Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
                     TYN+LM   C       A  L+N M  +G+ P+ I++ IL+  
Sbjct: 514 ----------TYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQG 556



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 145/365 (39%), Gaps = 34/365 (9%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           EFG   D   A++ +  +KKH        C+ +++        M +   Y ++       
Sbjct: 174 EFGYVSD---AIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMVALEFYLEILDSGYPP 230

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+Y FN LMN       +K    ++  ++K G+     S+N L+   C +GN    +E +
Sbjct: 231 NVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGN---LEEGF 287

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
                +E   V   DVFTYS ++         + A  + ++M   G+ PN +T+++LIN 
Sbjct: 288 RLKMVMEEFRVFP-DVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLING 346

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT------- 460
               G V+ A+ ++++M   G + +    N L+    +   F  A +     T       
Sbjct: 347 QCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPD 406

Query: 461 -LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK------------ 507
             + T +  G   +G+ +    M  +  +      N    +  S   +            
Sbjct: 407 KFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLR 466

Query: 508 ---RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
              R   KP   TY ++M   C   D      L+ EM++ G  P  I++ +L++     G
Sbjct: 467 EMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQG 526

Query: 563 NVEGA 567
            V+ A
Sbjct: 527 QVKNA 531


>gi|356532361|ref|XP_003534742.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 646

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 13/223 (5%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           ALR YD +K      +  +   +I + G+ G+Y     +Y DL+      N+  +N+L+ 
Sbjct: 210 ALRLYDRAKAEKWHVDTVVFSGLIKMHGMSGNYDGCLNVYNDLKVLGAKPNLVTYNALLY 269

Query: 300 V-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
                  A D K    +Y+ M   G+  +  +Y  LL+A C A     A  +Y E+K   
Sbjct: 270 AMGRAKRARDAK---AIYEEMINNGLTPNWPTYAALLQAYCRARFNRDALNVYKEMKE-- 324

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TPNTITWSSLINACANAGL 413
            KG   LD+  Y+ +  + A+      A+K+ EDM S+G   P++ T++SLIN  ++ G 
Sbjct: 325 -KGK-DLDILLYNMLFDMCANVGCEGEAVKIFEDMKSSGTCRPDSFTYASLINMYSSIGK 382

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           + +   +F EM+++G EPN      L+    +A + D   ++F
Sbjct: 383 ISEMEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIF 425



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 107/227 (47%), Gaps = 7/227 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           ++F   ++  G   +    L  Y+  K   + PN+     ++   G       ++AIYE+
Sbjct: 227 VVFSGLIKMHGMSGNYDGCLNVYNDLKVLGAKPNLVTYNALLYAMGRAKRARDAKAIYEE 286

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + +  +T N   + +L+     A   +  L VYK M++ G   D+  YN+L   C   G 
Sbjct: 287 MINNGLTPNWPTYAALLQAYCRARFNRDALNVYKEMKEKGKDLDILLYNMLFDMCANVGC 346

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AKWWQMALKVKEDMLSAGVTPNT 398
              A +I+ ++K   + G  + D FTY++++ +++   K  +M     E M+ +G  PN 
Sbjct: 347 EGEAVKIFEDMK---SSGTCRPDSFTYASLINMYSSIGKISEMEAMFNE-MMESGFEPNI 402

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
           I  +SL++    A   +  + +F +++  G  P+ + C+ LL A  +
Sbjct: 403 IVLTSLVHCYGKAKRTDDVVKIFNQLMDLGISPDGRFCDCLLYAMTQ 449



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 38/209 (18%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V  Y+  +K+F + K ++ A K+ ++ML  GV PN IT+S++I   +   L  +A+  FE
Sbjct: 121 VILYNVTLKLFREVKDFEGAEKLFDEMLQRGVNPNLITFSTMIICASVCSLPHKAVKWFE 180

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV------------ALGE 470
            M   GCEP+   C+ ++ +       D A RL+      K  V             +  
Sbjct: 181 MMPSFGCEPDDNVCSSMIYSYARTGNADMALRLYDRAKAEKWHVDTVVFSGLIKMHGMSG 240

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTD 528
           +YDG  +  +++                        K    KP   TYN L+ A      
Sbjct: 241 NYDGCLNVYNDL------------------------KVLGAKPNLVTYNALLYAMGRAKR 276

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDA 557
               KA+  EM   GL+PN  ++  L+ A
Sbjct: 277 ARDAKAIYEEMINNGLTPNWPTYAALLQA 305



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 128/291 (43%), Gaps = 10/291 (3%)

Query: 179 EVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY---ACIVPRADILFCNFVREFGKKR 235
           E+L+     V E D  F I+   VN     LA+ Y        R  IL+   ++ F + +
Sbjct: 77  EILKVLGDNVLEADAVF-ILNSMVNPYTALLAVEYFKQKIKHARHVILYNVTLKLFREVK 135

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295
           D   A + +D   +   +PN+    T+I    +C    K+   +E + S     +  V +
Sbjct: 136 DFEGAEKLFDEMLQRGVNPNLITFSTMIICASVCSLPHKAVKWFEMMPSFGCEPDDNVCS 195

Query: 296 SLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           S++   A   +    L +Y   +      D   ++ L+K   ++GN      +Y ++K L
Sbjct: 196 SMIYSYARTGNADMALRLYDRAKAEKWHVDTVVFSGLIKMHGMSGNYDGCLNVYNDLKVL 255

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
            AK     ++ TY+ ++     AK  + A  + E+M++ G+TPN  T+++L+ A   A  
Sbjct: 256 GAKP----NLVTYNALLYAMGRAKRARDAKAIYEEMINNGLTPNWPTYAALLQAYCRARF 311

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
              A+++++EM + G + +    N+L   C        A ++F     S T
Sbjct: 312 NRDALNVYKEMKEKGKDLDILLYNMLFDMCANVGCEGEAVKIFEDMKSSGT 362


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 113/259 (43%), Gaps = 36/259 (13%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M   G + D ++Y+ ++   C A     A +++ E+K    +  +  DV+ Y+T++
Sbjct: 209 VIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMK----RNGIAPDVYVYTTLI 264

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F  A + + A    ++M   G  PN +T+++LI+A   +  V +A  ++E ML  GC 
Sbjct: 265 DSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCT 324

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN      L+    +A + ++A ++++   + K  V + +          +M  +     
Sbjct: 325 PNIVTYTALIDGLCKAGKIEKASQIYK--IMKKENVEIPD---------VDMHFRVVDGA 373

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNH 548
           +N PN                     TY  L+   C  Y     + L+  M   G  PNH
Sbjct: 374 SNEPNVF-------------------TYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNH 414

Query: 549 ISWTILIDACGGSGNVEGA 567
           + +  LID C  +G ++ A
Sbjct: 415 VVYDALIDGCCKAGKLDEA 433



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 142/345 (41%), Gaps = 60/345 (17%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A + +   K++  +P++Y+  T+ID     G   ++R  ++++       N+  + +L++
Sbjct: 241 AFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIH 300

Query: 300 VNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                 K +   EVY+ M   G   ++ +Y  L+   C AG    A +IY   K ++ + 
Sbjct: 301 AYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIY---KIMKKEN 357

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
           V   DV  +  +V                     A   PN  T+ +L++    A  V++A
Sbjct: 358 VEIPDVDMHFRVVD-------------------GASNEPNVFTYGALVDGLCKAYQVKEA 398

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED-----Y 472
             L + M   GCEPN    + L+  C +A + D A  +F       T +  G D     Y
Sbjct: 399 RDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVF------TTMLECGYDPNVYTY 452

Query: 473 DGNTDRISNMEHKDKQ---SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-- 527
               DR+     KDK+   ++      + N          S  P    Y  ++   C   
Sbjct: 453 SSLIDRL----FKDKRLDLALKVLSKMLEN----------SCAPNVVIYTEMIDGLCKVG 498

Query: 528 ---DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              + Y++  +M E    G +PN +++T +ID  G SG VE  L+
Sbjct: 499 KTDEAYKLMVMMEEK---GCNPNVVTYTAMIDGFGKSGRVEKCLE 540



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 121/264 (45%), Gaps = 20/264 (7%)

Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF 224
           L  +G++E    + +++++  + + ++D  FR+V    N+P+V     Y  +V       
Sbjct: 337 LCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNV---FTYGALVDG----L 389

Query: 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284
           C    +  + RDL+ ++            PN  +   +ID C   G   +++ ++  +  
Sbjct: 390 CK-AYQVKEARDLLKSMSVEGCE------PNHVVYDALIDGCCKAGKLDEAQEVFTTMLE 442

Query: 285 QNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
                N+Y ++SL++    D  L   L+V   M +     ++  Y  ++   C  G T  
Sbjct: 443 CGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKT-- 500

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
             E Y  +  +E KG    +V TY+ ++  F  +   +  L++ + M S G  PN +T+ 
Sbjct: 501 -DEAYKLMVMMEEKGC-NPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYR 558

Query: 403 SLINACANAGLVEQAMHLFEEMLQ 426
            LIN C + GL+++A  L EEM Q
Sbjct: 559 VLINHCCSTGLLDEAHKLLEEMKQ 582



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 27/232 (11%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + +   +  + K R +  A   Y+       +PN+     +ID  G+C  G   K+  IY
Sbjct: 293 VTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALID--GLCKAGKIEKASQIY 350

Query: 280 EDLRSQNVTL-----------------NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV 320
           + ++ +NV +                 N++ + +L++    A+ +K   ++ K+M   G 
Sbjct: 351 KIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGC 410

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             +   Y+ L+  CC AG    AQE++  +  LE       +V+TYS+++      K   
Sbjct: 411 EPNHVVYDALIDGCCKAGKLDEAQEVFTTM--LECG--YDPNVYTYSSLIDRLFKDKRLD 466

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +ALKV   ML     PN + ++ +I+     G  ++A  L   M + GC PN
Sbjct: 467 LALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPN 518



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 96/236 (40%), Gaps = 30/236 (12%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D   Y+ ++    +A  ++ A+     M ++   PN +T+  L+  C N   + +   + 
Sbjct: 41  DTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRIL 100

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ------------VALG 469
             M+  GC P+ +  N L+ A   +  +  A++L +       Q            +   
Sbjct: 101 SMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSS 160

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS-------SFDKRFS---------FKP 513
           E+   +   ++   + +        N V  S++S        F+K ++         F P
Sbjct: 161 EEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIP 220

Query: 514 TTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            T+TY+ ++   C      KA  L  EM+  G++P+   +T LID+   +G +E A
Sbjct: 221 DTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQA 276


>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
 gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 122/282 (43%), Gaps = 55/282 (19%)

Query: 292 YVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
           Y + +++ +     +F    ++   M + G    + +YN L+ +   A     A E++ +
Sbjct: 339 YTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQ 398

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           ++    K   + D  TY T++ + A A +   A+++ + M +AG++P+T T+S +IN   
Sbjct: 399 MQ----KAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLG 454

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
            AG +  A  LF EM++ GC PN    NI++    +A  +  A +L+R            
Sbjct: 455 KAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYR------------ 502

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
                           D Q+                     F+P   TY+I+M+      
Sbjct: 503 ----------------DMQNA-------------------GFEPDKVTYSIVMEVLGHSG 527

Query: 530 Y--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           Y    +A+ +EM+     P+   + +L+D  G +GNVE A +
Sbjct: 528 YLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWE 569



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 6/227 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  +    K   L  A+  Y   +    SP+ +    +I+  G  G    +  ++ +
Sbjct: 409 VTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCE 468

Query: 282 LRSQNVTLNIYVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q    N+  +N +  +   A + +  L++Y++MQ  G   D  +Y+I+++    +G 
Sbjct: 469 MIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGY 528

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ I+ E+K    +     D   Y  +V ++  A   + A +  + ML AG+ PN  
Sbjct: 529 LDEAEAIFSEMK----RKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVP 584

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           T +SL++A      +  A +L + ML  G  P+ Q   +LL  C EA
Sbjct: 585 TCNSLLSAFLRVNRLPDAYNLLQSMLNLGLNPSLQTYTLLLSCCTEA 631



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 114/237 (48%), Gaps = 6/237 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   V   G+ +  V+  +  D   +    P +     +I   G       +  ++  ++
Sbjct: 341 YTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQ 400

Query: 284 SQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
                 +   + +L++++A    L F +E+Y+ MQ  G+  D  +Y++++     AG+  
Sbjct: 401 KAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLA 460

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A +++ E+  +E   V  L   TY+ ++ + A A+ +Q ALK+  DM +AG  P+ +T+
Sbjct: 461 AADKLFCEM--IEQGCVPNL--VTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTY 516

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           S ++    ++G +++A  +F EM +    P+     +L+    +A   ++A+  +++
Sbjct: 517 SIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQA 573



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 111/239 (46%), Gaps = 6/239 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  +G+   L  A+  ++  +K    P+     T+ID+    G    +  +Y+ 
Sbjct: 374 VTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQR 433

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +++  ++ + + ++ ++N    A  L    +++  M + G + ++ +YNI++     A N
Sbjct: 434 MQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARN 493

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++Y ++++       + D  TYS +++V   + +   A  +  +M      P+  
Sbjct: 494 YQNALKLYRDMQN----AGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEP 549

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            +  L++    AG VE+A   ++ ML AG  PN   CN LL A +   +   A+ L +S
Sbjct: 550 VYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQS 608



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 99/218 (45%), Gaps = 28/218 (12%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
            K D +TY+T+V +   AK +    K+ + M+  G  P  +T++ LI++   A  +  A+
Sbjct: 334 FKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAV 393

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA-LGEDYDGNTD 477
            +F +M +AGCEP+      L+    +A   + A  +++     + Q A L  D    + 
Sbjct: 394 EVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQ-----RMQAAGLSPDTFTYSV 448

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRF------SFKPTTTTYNIL--MKACCTDY 529
            I+ +                  H ++ DK F         P   TYNI+  ++A   +Y
Sbjct: 449 MINCLGKA--------------GHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNY 494

Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                L  +M+  G  P+ ++++I+++  G SG ++ A
Sbjct: 495 QNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEA 532


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 140/353 (39%), Gaps = 63/353 (17%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IY 279
           ILF    R    K    + L  +  S K+  +   Y C  +++  G+C D   S A  + 
Sbjct: 306 ILFDGLSRNGDSK----AMLSLFGKSLKNGVTIGDYTCSILLN--GLCKDGKVSIAEEVL 359

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           + L +  +     ++N+L+N      +L+     +  M+   +  D  +YN L+   C A
Sbjct: 360 QSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKA 419

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
                AQ++  E   ++  GV    V T++T++  +      +    V  +M   G+ PN
Sbjct: 420 ERITNAQDLLME---MQDNGV-NPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPN 475

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +++ S++NA    G + +A+ + ++M      PN+Q  N ++ A VE    D+AF L  
Sbjct: 476 VVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVE 535

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
                                                            K     P+  T
Sbjct: 536 KM-----------------------------------------------KSNGISPSIVT 548

Query: 518 YNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           YN+L+K  C  +     + ++N +    L P+ +S+  LI AC   GN++ AL
Sbjct: 549 YNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 601



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 140/327 (42%), Gaps = 23/327 (7%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           ++G++     VL+ L   G+ P  +   +   L+   CQ    +GE+E        ++  
Sbjct: 348 KDGKVSIAEEVLQSLVNAGLVPTRVIYNT---LINGYCQ----TGELEGAFSTFGQMKSR 400

Query: 185 RLPVKELDEEFRIVQLC-----VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS 239
            +    +     I  LC      N  D+ + ++   + P  +  F   +  +G+   L  
Sbjct: 401 HIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVET-FNTLIDAYGRTGQLEK 459

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
                   +++   PN+    +I++     G   ++ AI +D+  ++V  N  V+N++++
Sbjct: 460 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 519

Query: 300 V----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
                  +D  F L   + M+  G+   + +YN+L+K  C       A+EI   + +   
Sbjct: 520 AYVEHGPNDQAFIL--VEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHR- 576

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
              L  D  +Y+T++           AL +++ M   G+     T+  LI+    AG + 
Sbjct: 577 ---LIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLI 633

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +  +L+++M+Q    P++   NI+++A
Sbjct: 634 EMEYLYQKMMQNNVVPSNAIHNIMVEA 660



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 106/254 (41%), Gaps = 21/254 (8%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  ++N  ++AC  AG+     E  G ++ +   G    + F+Y+ ++     A  
Sbjct: 155 GARPDTFAWNKAVQACVAAGDL---GEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGR 211

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A++V ++M    V PN IT++++I+     G +E    L ++M+  G +PN+   N+
Sbjct: 212 GGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNV 271

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           LL     A +      L      S+  V  G  Y    D +S   + D +++        
Sbjct: 272 LLSGLCRAGRMGETSALLDEMA-SQKMVPDGFTYSILFDGLS--RNGDSKAM-------- 320

Query: 499 NSHYSSFDKRFSFKPTTTTY--NILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTIL 554
               S F K      T   Y  +IL+   C D      + ++  +   GL P  + +  L
Sbjct: 321 ---LSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTL 377

Query: 555 IDACGGSGNVEGAL 568
           I+    +G +EGA 
Sbjct: 378 INGYCQTGELEGAF 391



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 129/333 (38%), Gaps = 48/333 (14%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN +    +I      G    +  +++++  + V  N   +N++++  +   DL+    +
Sbjct: 194 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSL 253

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M   G+  +  +YN+LL   C AG       +  E+    A   +  D FTYS +  
Sbjct: 254 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM----ASQKMVPDGFTYSILFD 309

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
             +     +  L +    L  GVT    T S L+N     G V  A  + + ++ AG  P
Sbjct: 310 GLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 369

Query: 432 NSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG--NTDRISN----- 481
                N L+    +  + + AF  F   +S  +    +      +G    +RI+N     
Sbjct: 370 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 429

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL------ 535
           ME +D                          PT  T+N L+ A    Y R   L      
Sbjct: 430 MEMQDN----------------------GVNPTVETFNTLIDA----YGRTGQLEKCFIV 463

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           ++EM+  GL PN +S+  +++A   +G +  A+
Sbjct: 464 LSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 496


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 107/282 (37%), Gaps = 55/282 (19%)

Query: 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           Y+F+ LM +N     +    Y+ +   G   D+  +N+L+   C       AQ ++GE+ 
Sbjct: 195 YLFDRLMKLNLTSPAWAF--YEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEI- 251

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
               K  L+  V +++T++  +  +       ++K  M+   V P+  T+S LIN     
Sbjct: 252 ---GKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKE 308

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
           G ++ A  LF EM   G  PN      L+       + D    +++              
Sbjct: 309 GQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQML----------- 357

Query: 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DY 529
                                               R   KP   TYN L+   C   D 
Sbjct: 358 ------------------------------------RKGVKPDVITYNTLINGLCKVGDL 381

Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
              K L+ EM   GL P+  ++T+LID C   G++E AL+ R
Sbjct: 382 REAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIR 423



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 133/318 (41%), Gaps = 59/318 (18%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTL 309
           P+++    +I+  G+C  G    +  ++ ++  + +  N   F +L+N +         +
Sbjct: 293 PDVFTYSVLIN--GLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGM 350

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+Y+ M + GV  D+ +YN L+   C  G+   A+++   V  +  +G LK D FTY+ +
Sbjct: 351 EIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKL---VIEMTQRG-LKPDKFTYTML 406

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + AL+++++M+  G+  + + +++LI+     G V +A     EML+AG 
Sbjct: 407 IDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGI 466

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +P+     +++    +       F+L +               DG+              
Sbjct: 467 KPDDATYTMVIHGFCKKGDVKTGFKLLKEMQC-----------DGHV------------- 502

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
                                  P   TYN+L+   C       A  L++ M  +G+ P+
Sbjct: 503 -----------------------PGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPD 539

Query: 548 HISWTILIDACGGSGNVE 565
            I++ IL++     GN E
Sbjct: 540 DITYNILLEGHCKHGNRE 557



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 111/292 (38%), Gaps = 55/292 (18%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A YE++       ++  FN LM+     H +     ++  + K G+   + S+N L+   
Sbjct: 211 AFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGY 270

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C +GN  L Q     +K    +  +  DVFTYS ++           A K+  +M   G+
Sbjct: 271 CKSGN--LDQGF--RLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGL 326

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PN +T+++LIN     G  +  M ++++ML+ G +P+    N L+    +      A +
Sbjct: 327 VPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKK 386

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           L     +  TQ  L                                           KP 
Sbjct: 387 L----VIEMTQRGL-------------------------------------------KPD 399

Query: 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
             TY +L+  CC   D      +  EM   G+  +++++T LI      G V
Sbjct: 400 KFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQV 451


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 144/330 (43%), Gaps = 39/330 (11%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN+ I  T+ID C   G+ M ++ ++  +    +  N + ++ LMN        +   +
Sbjct: 190 SPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQ 249

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +Y+NM++ G++ +  +YN L+   C  G    A +++ E++    KG+    V TY+ ++
Sbjct: 250 MYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMRE---KGI-ACGVMTYNILI 305

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 K +  A+K+   +   G++PN +T++ LIN   + G ++ A+ LF ++  +G  
Sbjct: 306 GGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLS 365

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDK 487
           P     N L+    +      A  L +      ++ ++V     Y    D  + + + +K
Sbjct: 366 PTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVT----YTILIDAFARLNYTEK 421

Query: 488 ----QSITNTPNFVPNSHYSSF--------------DKRFS------FKPTTTTYNILMK 523
                S+      VP+ +  S                K F        +P +  YN ++ 
Sbjct: 422 ACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIH 481

Query: 524 ACCTD--YYRVKALMNEMRTVGLSPNHISW 551
             C +   YR   L+NEM   G+ PN  S+
Sbjct: 482 GYCKEGSSYRALRLLNEMVHSGMVPNVASF 511



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 35/295 (11%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILL 331
           K+  I+ +L+S+ V L+ Y F  ++        F     +   +++ G+  ++  Y  L+
Sbjct: 142 KAWWIFNELKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLI 200

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
             CC  GN +LA+ ++ ++  L     L  +  TYS ++  F      +   ++ E+M  
Sbjct: 201 DGCCKYGNVMLAKNLFCKMDRLG----LVPNPHTYSVLMNGFFKQGLQREGFQMYENMKR 256

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           +G+ PN   ++ LI+   N G+V++A  +F EM + G        NIL+       +F  
Sbjct: 257 SGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGE 316

Query: 452 AFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
           A +L        LS   V      +G  D +  M+         T   + N   SS    
Sbjct: 317 AVKLVHKVNKVGLSPNIVTYNILINGFCD-VGKMD---------TAVRLFNQLKSS---- 362

Query: 509 FSFKPTTTTYNILMKACCTDYYRVKA------LMNEMRTVGLSPNHISWTILIDA 557
               PT  TYN L+      Y +V+       L+ EM    ++P+ +++TILIDA
Sbjct: 363 -GLSPTLVTYNTLIAG----YSKVENLAGALDLVKEMEERCIAPSKVTYTILIDA 412



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 67/126 (53%), Gaps = 10/126 (7%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY---GEVKHLEAKGVLKLDVFTY 366
           E++  M+K G++ D+ +Y++L+   C+ GN   A +++   GE+ HL+   V+      Y
Sbjct: 424 EMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEM-HLQPNSVI------Y 476

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++  +        AL++  +M+ +G+ PN  ++ S I         ++A  L  +M+ 
Sbjct: 477 NTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMIN 536

Query: 427 AGCEPN 432
           +G +P+
Sbjct: 537 SGLKPS 542



 Score = 45.4 bits (106), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 50/169 (29%)

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           T  + +++NA  ++   +QA+     M+  G  P S   N L+   + +  FD+A+ +F 
Sbjct: 89  TPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFN 148

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
                K++V L                                                +
Sbjct: 149 EL---KSKVVL---------------------------------------------DAYS 160

Query: 518 YNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           + I++K CC   Y VK   L+  +   GLSPN + +T LID C   GNV
Sbjct: 161 FGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNV 209


>gi|449469755|ref|XP_004152584.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Cucumis sativus]
          Length = 708

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 139/310 (44%), Gaps = 43/310 (13%)

Query: 265 VCGICGDYMKSRAIYEDLR--SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGV 320
           +   C + +KS+A+   L    + V  N+ ++N++M+    ++ ++    V+  M+  GV
Sbjct: 336 IKSFCDEGLKSQALILQLEMEKKGVASNVIMYNTIMDAFSKSNQIEEAEGVFAEMKSKGV 395

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA-DAKWW 379
               AS+NIL+ A        + +++  E+K +     L+ +V +Y+ ++  +    K  
Sbjct: 396 KPTSASFNILMNAYSRRMQPEIVEKLLVEMKDMG----LEPNVKSYTCLISAYGRQKKMS 451

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
            MA      M   G+ P + ++++LI+A + +G  E+A   FE ML+ G +P+ +    L
Sbjct: 452 DMAADAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKAYSAFENMLREGLKPSIETYTTL 511

Query: 440 LQACVEACQFDRA---FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           L A      F RA     L + W L   +  LG     NT                   F
Sbjct: 512 LDA------FRRAGDTVSLMKIWKLMIREKVLGTRVTFNT---------------LLDGF 550

Query: 497 VPNSHY-------SSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN 547
             + HY       S FDK    +PT  TYN+LM A      + ++  L+ EM    L P+
Sbjct: 551 AKHGHYVEARDVISEFDK-IGLQPTVMTYNMLMNAYARGGQHLKLPQLLQEMAARDLKPD 609

Query: 548 HISWTILIDA 557
            ++++ +I A
Sbjct: 610 SVTYSTMIYA 619



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 133/309 (43%), Gaps = 22/309 (7%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS----LMNVNAHDLKFTLEVYKNMQK 317
           +  + G  G   K   ++++L  +    +++V+NS    LM    +D     +VY+ M+ 
Sbjct: 229 LFPLLGRAGMGEKIMVLFKNLPLKKEFQDVHVYNSAISGLMVCKRYDD--ACKVYEAMET 286

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
             V  D  + +I++      G +  A++ +   + +  KGV K        ++K F D  
Sbjct: 287 NNVNPDHVTCSIMITVMRKIGRS--AKDSWDYFEKMNQKGV-KWSSEVLGALIKSFCDEG 343

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
               AL ++ +M   GV  N I ++++++A + +  +E+A  +F EM   G +P S   N
Sbjct: 344 LKSQALILQLEMEKKGVASNVIMYNTIMDAFSKSNQIEEAEGVFAEMKSKGVKPTSASFN 403

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
           IL+ A     Q +   +L     +    + L  +    T  IS    + K S      F+
Sbjct: 404 ILMNAYSRRMQPEIVEKLL----VEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFL 459

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
                    K+   +PT+ +Y  L+ A     +  KA      M   GL P+  ++T L+
Sbjct: 460 RM-------KKNGIRPTSHSYTALIHAYSVSGWHEKAYSAFENMLREGLKPSIETYTTLL 512

Query: 556 DACGGSGNV 564
           DA   +G+ 
Sbjct: 513 DAFRRAGDT 521



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/388 (19%), Positives = 165/388 (42%), Gaps = 59/388 (15%)

Query: 59  LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVAS 118
           ++  + R      DY+  M  K  K    E    +++S    EG  S+ A +L LEM   
Sbjct: 302 VMRKIGRSAKDSWDYFEKMNQKGVKWSS-EVLGALIKSFC-DEGLKSQ-ALILQLEMEKK 358

Query: 119 GIVKSI-----------REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLD 167
           G+  ++           +  +I+   GV  ++   GV P      + F +L N   R + 
Sbjct: 359 GVASNVIMYNTIMDAFSKSNQIEEAEGVFAEMKSKGVKP----TSASFNILMNAYSRRMQ 414

Query: 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227
                      E++E+  + +K++  E          P+V     Y C++          
Sbjct: 415 P----------EIVEKLLVEMKDMGLE----------PNVK---SYTCLIS--------- 442

Query: 228 VREFGKKRDLVS-ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
              +G+++ +   A  A+   KK+   P  +    +I    + G + K+ + +E++  + 
Sbjct: 443 --AYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKAYSAFENMLREG 500

Query: 287 VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +  +I  + +L++    A D    ++++K M +  V+    ++N LL      G+ V A+
Sbjct: 501 LKPSIETYTTLLDAFRRAGDTVSLMKIWKLMIREKVLGTRVTFNTLLDGFAKHGHYVEAR 560

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           ++  E   +     L+  V TY+ ++  +A         ++ ++M +  + P+++T+S++
Sbjct: 561 DVISEFDKIG----LQPTVMTYNMLMNAYARGGQHLKLPQLLQEMAARDLKPDSVTYSTM 616

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPN 432
           I A       ++A    ++M+++G  P+
Sbjct: 617 IYAFVRVRDFKRAFFYHKKMVKSGQVPD 644



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 4/143 (2%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            ++NM + G+   + +Y  LL A   AG+TV   +I+   K +  + VL   V T++T++
Sbjct: 492 AFENMLREGLKPSIETYTTLLDAFRRAGDTVSLMKIW---KLMIREKVLGTRV-TFNTLL 547

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             FA    +  A  V  +    G+ P  +T++ L+NA A  G   +   L +EM     +
Sbjct: 548 DGFAKHGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLQEMAARDLK 607

Query: 431 PNSQCCNILLQACVEACQFDRAF 453
           P+S   + ++ A V    F RAF
Sbjct: 608 PDSVTYSTMIYAFVRVRDFKRAF 630


>gi|297834586|ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331015|gb|EFH61434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 653

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 93/183 (50%), Gaps = 6/183 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           SPN+    T +      GD  K   + E L       ++  F+ ++N    A ++K   +
Sbjct: 451 SPNLITFNTFLSGYSAGGDVKKVHGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFD 510

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            +K M + G+  +  +YNIL+++ C  G+T  + +++  +K    +  L  +++ Y+ I+
Sbjct: 511 CFKEMLEWGIKPNEITYNILIRSSCSTGDTGRSVKLFANMK----ESGLSPNLYAYNAII 566

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           + F   K  + A ++ + ML  G+ P+  T+S+LI A + +G   +A  +F  M + GC 
Sbjct: 567 QSFCKMKKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSMERHGCV 626

Query: 431 PNS 433
           P+S
Sbjct: 627 PDS 629



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 6/171 (3%)

Query: 290 NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           ++Y +N++++    A   +        MQ  G+  ++ ++N  L      G+    ++++
Sbjct: 418 SVYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSGYSAGGD---VKKVH 474

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
           G V+ L   G    DV T+S I+     AK  + A    ++ML  G+ PN IT++ LI +
Sbjct: 475 GVVEKLLEHGC-NPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRS 533

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
             + G   +++ LF  M ++G  PN    N ++Q+  +  +  +A  L ++
Sbjct: 534 SCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKT 584



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 7/146 (4%)

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           K+  +V+  +  LG+      YN ++ A   + +  LA   + +++  + K     D FT
Sbjct: 156 KYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDDCKP----DRFT 211

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+ ++           A+++ + M   G  PN  T++ LI+    AG +E+A+   E M 
Sbjct: 212 YNILIHGVCKKGVVDEAIRLVKQMEREGNRPNVFTYTILIDGFLIAGRIEEALKQLEMMQ 271

Query: 426 QAGCEPNSQCCNILLQA---CVEACQ 448
                PN      L+     C+  C+
Sbjct: 272 VRKLNPNEATIRTLVHGIFRCLPPCE 297



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 29/150 (19%), Positives = 66/150 (44%), Gaps = 4/150 (2%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           L  ++E+ K +++ G         +L+ +    G      +++ ++  L  K   +L   
Sbjct: 120 LLLSMELLKEIRESGYRITDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRL--- 176

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            Y+ ++     +    +A    + M S    P+  T++ LI+     G+V++A+ L ++M
Sbjct: 177 -YNAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRFTYNILIHGVCKKGVVDEAIRLVKQM 235

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            + G  PN     IL+   + A + + A +
Sbjct: 236 EREGNRPNVFTYTILIDGFLIAGRIEEALK 265


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 111/281 (39%), Gaps = 55/281 (19%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           V + LM +     K     YK + + G  A +  +NIL+   C  G   LAQ ++  +  
Sbjct: 107 VLDHLMKLKY--FKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAI-- 162

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
              K  LK  V +++T++  +          ++K  M ++G  P+  T+S LIN      
Sbjct: 163 --TKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKES 220

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            +++A  LF+EML+ G  PN      L+    +  + D A  ++                
Sbjct: 221 KMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIY---------------- 264

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYY 530
                         KQ ++                     P   TYN L+   C   D  
Sbjct: 265 --------------KQILSQ-----------------GLSPDLITYNTLIYGFCKKGDLK 293

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           + + L++EM   GL P+ I++T LID     G++E A + R
Sbjct: 294 QTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYR 334



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 150/360 (41%), Gaps = 39/360 (10%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DI +F   +  + +   L  AL  +  S++H        CR ++D       +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWG 122

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            Y+++       ++Y FN LM+      +++    V+  + K G+   + S+N L+    
Sbjct: 123 FYKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYI 182

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G   +  E +     + A G  + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 183 KMG---ILDEGFRLKNAMHASGA-QPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLV 238

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++LI+     G ++ AM +++++L  G  P+    N L+            +  
Sbjct: 239 PNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLI------------YGF 286

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
            +   L +T+  + E          +M+      IT T     +      +  F ++   
Sbjct: 287 CKKGDLKQTRDLIDE---------MSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKM 337

Query: 516 TTYNI---------LMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
              NI         L+   C +   V A  ++ EM +VGL P+  ++TI+++    +G+V
Sbjct: 338 IEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDV 397



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 10/183 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +  IY+ + SQ ++ ++  +N+L+       DLK T 
Sbjct: 239 PNGVTFTTLID--GHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTR 296

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   M   G+  D  +Y  L+   C  G+   A E     K +E    ++LD   Y+ +
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEY--RKKMIEEN--IRLDDVVYTAL 352

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +MLS G+ P++ T++ ++N     G V     L +EM + G 
Sbjct: 353 ISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGH 412

Query: 430 EPN 432
            P+
Sbjct: 413 VPS 415



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 20/222 (9%)

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           LE KG  + D++ +S ++  + ++ + + AL+               T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLK 115

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA---FRLFRSWTLSKTQVALG 469
             +     ++E+L+ G   +    NIL+    +  +   A   F     W L  + V+  
Sbjct: 116 YFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFN 175

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
              +G            K  I +    + N+ ++S       +P   TY++L+   C + 
Sbjct: 176 TLMNGYI----------KMGILDEGFRLKNAMHAS-----GAQPDVYTYSVLINGLCKES 220

Query: 530 YRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              +A  L +EM   GL PN +++T LID    +G ++ A++
Sbjct: 221 KMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAME 262


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 166/378 (43%), Gaps = 37/378 (9%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAI 278
           + L+   +  F  K DLVSA R +D  ++   + +     T+I+  G+C   +  ++  +
Sbjct: 361 EALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMIN--GLCRAVELEEAEKL 418

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCL 336
            +++ ++ + ++   +  L++      K     +++  M + GV  ++ +Y  L    C 
Sbjct: 419 LQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCK 478

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G+   A E+  E+ +   KG L+L+  TY++++     A + + A++   DM +A + P
Sbjct: 479 QGDVQAANELLHEMSN---KG-LELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKP 534

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +  T+++LI+A   +G +++A  L +EML  G +P     N+L+     + + +   +L 
Sbjct: 535 DVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLL 594

Query: 457 RSWTLSKT-------------QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
             W L K              Q  +  +    T+    M  +D     NT N +   H  
Sbjct: 595 -DWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCK 653

Query: 504 SFDKRFS-----------FKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHIS 550
           + + + +           F+ T T+Y+ L++       +   + L ++MR  GL+     
Sbjct: 654 ARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEGLTAESDV 713

Query: 551 WTILIDACGGSGNVEGAL 568
           +   ID      N+E  L
Sbjct: 714 YDFYIDLNFNEDNLESTL 731



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 118/301 (39%), Gaps = 59/301 (19%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGE--------------------------VKHLE-- 354
           ++ SYNILLKA C AG    A++++ E                          VK L+  
Sbjct: 258 NVCSYNILLKALCDAGRVKDARQLFDEMASAPDVVTYGILIHGHCALGELENAVKLLDEM 317

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
             G ++ +   Y+++V +  D  W   AL+V EDM+   V  +   ++++++   N G +
Sbjct: 318 VAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDL 377

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS-WT--LSKTQVALGED 471
             A   F+EM + G   +      ++     A + + A +L +  W   L   +V     
Sbjct: 378 VSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVL 437

Query: 472 YDGNTDRISNME----HKDKQSITNTPNFVPNSHYSSFDKRF------------------ 509
            DG   R    E    H        TPN V    Y++                       
Sbjct: 438 IDGYCKRGKMAEAFQMHNAMVQRGVTPNVVT---YTALTDGLCKQGDVQAANELLHEMSN 494

Query: 510 -SFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
              +    TYN L+   C   Y  +A+  M +M T  L P+  ++T LIDA   SG+++ 
Sbjct: 495 KGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDR 554

Query: 567 A 567
           A
Sbjct: 555 A 555



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 89/211 (42%), Gaps = 41/211 (19%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-------------- 299
           P++Y   T+ID     GD  ++ ++ +++  + +   I  +N LMN              
Sbjct: 534 PDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKL 593

Query: 300 ------VNAH-----------------DLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
                  N H                 ++K T E+YK M+   V  +  +YNIL+K  C 
Sbjct: 594 LDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCK 653

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           A N   A   + E+     KG  +L   +YS ++++    K +  A ++  DM   G+T 
Sbjct: 654 ARNMKEALYFHDEMIQ---KG-FRLTATSYSALIRLLNKKKKFVEARELFHDMRKEGLTA 709

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            +  +   I+   N   +E  + L +E+++A
Sbjct: 710 ESDVYDFYIDLNFNEDNLESTLALCDELVEA 740



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 25/229 (10%)

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A E++ E+ H         +V +Y+ ++K   DA   + A ++ ++M SA   P+ +T+ 
Sbjct: 247 AIELFQELPHK--------NVCSYNILLKALCDAGRVKDARQLFDEMASA---PDVVTYG 295

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
            LI+     G +E A+ L +EM+  G EPN+     ++    +      A R+     + 
Sbjct: 296 ILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVED--MV 353

Query: 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
           + +V L E     T  +S           N  + V    +    +R        TY  ++
Sbjct: 354 QRKVILDEAL--YTTVLS--------GFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMI 403

Query: 523 KACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              C   +    + L+ EM    L  + +++T+LID     G +  A Q
Sbjct: 404 NGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQ 452


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 128/318 (40%), Gaps = 59/318 (18%)

Query: 257 YICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           Y C  +++  G+C D   S A  + + L +  +     ++N+L+N      +L+     +
Sbjct: 341 YTCSILLN--GLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTF 398

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M+   +  D  +YN L+   C A     AQ++  E   ++  GV    V T++T++  
Sbjct: 399 GQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME---MQDNGV-NPTVETFNTLIDA 454

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +      +    V  +M   G+ PN +++ S++NA    G + +A+ + ++M      PN
Sbjct: 455 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 514

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
           +Q  N ++ A VE    D+AF L                                     
Sbjct: 515 AQVYNAIIDAYVEHGPNDQAFILVEKM--------------------------------- 541

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHIS 550
                         K     P+  TYN+L+K  C  +     + ++N +    L P+ +S
Sbjct: 542 --------------KSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVS 587

Query: 551 WTILIDACGGSGNVEGAL 568
           +  LI AC   GN++ AL
Sbjct: 588 YNTLISACCYRGNIDKAL 605



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 140/327 (42%), Gaps = 23/327 (7%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           ++G++     VL+ L   G+ P  +   +   L+   CQ    +GE+E        ++  
Sbjct: 352 KDGKVSIAEEVLQSLVNAGLVPTRVIYNT---LINGYCQ----TGELEGAFSTFGQMKSR 404

Query: 185 RLPVKELDEEFRIVQLC-----VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS 239
            +    +     I  LC      N  D+ + ++   + P  +  F   +  +G+   L  
Sbjct: 405 HIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVET-FNTLIDAYGRTGQLEK 463

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
                   +++   PN+    +I++     G   ++ AI +D+  ++V  N  V+N++++
Sbjct: 464 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 523

Query: 300 V----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
                  +D  F L   + M+  G+   + +YN+L+K  C       A+EI   + +   
Sbjct: 524 AYVEHGPNDQAFIL--VEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHR- 580

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
              L  D  +Y+T++           AL +++ M   G+     T+  LI+    AG + 
Sbjct: 581 ---LIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLN 637

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +  +L+++M+Q    P++   NI+++A
Sbjct: 638 EMEYLYQKMMQNNVVPSNAIHNIMVEA 664



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 106/254 (41%), Gaps = 21/254 (8%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  ++N  ++AC  AG+     E  G ++ +   G    + F+Y+ ++     A  
Sbjct: 159 GARPDTFAWNKAVQACVAAGDL---GEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGR 215

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A++V ++M    V PN IT++++I+     G +E    L ++M+  G +PN+   N+
Sbjct: 216 GGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNV 275

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           LL     A +      L      S+  V  G  Y    D +S   + D +++        
Sbjct: 276 LLSGLCRAGRMGETSALLDEMA-SQKMVPDGFTYSILFDGLS--RNGDSKAM-------- 324

Query: 499 NSHYSSFDKRFSFKPTTTTY--NILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTIL 554
               S F K      T   Y  +IL+   C D      + ++  +   GL P  + +  L
Sbjct: 325 ---LSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTL 381

Query: 555 IDACGGSGNVEGAL 568
           I+    +G +EGA 
Sbjct: 382 INGYCQTGELEGAF 395



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 129/333 (38%), Gaps = 48/333 (14%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN +    +I      G    +  +++++  + V  N   +N++++  +   DL+    +
Sbjct: 198 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 257

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M   G+  +  +YN+LL   C AG       +  E+    A   +  D FTYS +  
Sbjct: 258 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM----ASQKMVPDGFTYSILFD 313

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
             +     +  L +    L  GVT    T S L+N     G V  A  + + ++ AG  P
Sbjct: 314 GLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 373

Query: 432 NSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG--NTDRISN----- 481
                N L+    +  + + AF  F   +S  +    +      +G    +RI+N     
Sbjct: 374 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 433

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL------ 535
           ME +D                          PT  T+N L+ A    Y R   L      
Sbjct: 434 MEMQDN----------------------GVNPTVETFNTLIDA----YGRTGQLEKCFIV 467

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           ++EM+  GL PN +S+  +++A   +G +  A+
Sbjct: 468 LSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 500


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 147/345 (42%), Gaps = 32/345 (9%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           KK +L  AL+  +  K    SP++Y    +I   G C  GD  K   + E+++  N+  +
Sbjct: 337 KKGELDEALKVLEEMKSCGISPDVYTYSILIH--GFCKQGDVEKGLYLIEEMKYSNMEPS 394

Query: 291 IYVFNSLMNVNAHDL------KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +  ++SL     H L        +L++++++   G   D  +Y+IL+K  C+ G+   A 
Sbjct: 395 LVSYSSLF----HGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAH 450

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           ++  E+     +  L  D   + ++V  F     W  AL+    ML  G+ P+  T + +
Sbjct: 451 KLMEEM----VRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVI 506

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
           I+A    G VE+A++L  EM   G  PN    N ++    +  + +RA  LF    L + 
Sbjct: 507 IDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELF-PLMLKRN 565

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
            +     Y    D  +   +  K  +           Y+   K     P    Y IL+  
Sbjct: 566 VLPSVVVYSTLIDGFAKQSNSQKALML----------YARMLK-IGVTPDMVAYTILINI 614

Query: 525 CCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            C      +A  L  +M   G++P+ IS+T +I      G++  A
Sbjct: 615 LCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKA 659



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 138/334 (41%), Gaps = 51/334 (15%)

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAH--------DLKFTLEVYKNMQKLGVMADMASY 327
           R+++E+++S     N++ +  +MN            D +   E+ + M++ G    + +Y
Sbjct: 234 RSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTY 293

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           +  +   C  G    A +    +  + A G++  +V+ Y+ I+           ALKV E
Sbjct: 294 STYIYGLCRVGYVESALDFVRSL--ISANGLV--NVYCYNAIIHGLCKKGELDEALKVLE 349

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M S G++P+  T+S LI+     G VE+ ++L EEM  +  EP+    + L     +  
Sbjct: 350 EMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKR 409

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI----------SNMEHKDKQSITNTPNFV 497
             D +  +FR         A G  YD     I           +  HK  + +    N  
Sbjct: 410 LSDISLDIFRDLG------AAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRN-NLA 462

Query: 498 PN-SHYSSFDKRF-------------------SFKPTTTTYNILMKACCTDYYRVKA--L 535
           P+ S++ S    F                      P+  T N+++ A C +    +A  L
Sbjct: 463 PDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNL 522

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           MNEM+T G+ PN  ++  +I+        E AL+
Sbjct: 523 MNEMQTQGIFPNLFTYNAVINRLCKERKSERALE 556



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 18/248 (7%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L +   MQ  G+  ++ +YN ++   C    +  A E++     L  K  +   V  YST
Sbjct: 520 LNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFP----LMLKRNVLPSVVVYST 575

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  FA     Q AL +   ML  GVTP+ + ++ LIN   +   + +A +LF++M + G
Sbjct: 576 LIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENG 635

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
             P+      ++          +A+ LF    L +  +     Y    D    M   D  
Sbjct: 636 MTPDKISYTSVIAGFCRIGDMRKAWALFNE-MLQRGHLPTVVTYTSLVDGYCKMNRIDIA 694

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
            +                KR    P   TYN+L+ A        KAL  +NEM+  G+ P
Sbjct: 695 DMLIDEM-----------KRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLP 743

Query: 547 NHISWTIL 554
           +H+++ +L
Sbjct: 744 DHMTYMML 751



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 146/369 (39%), Gaps = 73/369 (19%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL--------------------RSQNV 287
           KK+  S ++   RT+++V  + G +M+  A+  D+                      ++ 
Sbjct: 116 KKYGFSRSIDAFRTVVNVLALAGMHMEVYALLRDIVCYYNKVNLDAFELFPILLESPKDA 175

Query: 288 TLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             ++ VF+ L+ V A +  L+  ++V+   +K G+     S N LLK    A      + 
Sbjct: 176 ARSVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRS 235

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ------MALKVKEDMLSAGVTPNTI 399
           ++ E+K          +VFTY+ ++  +    + +       A ++ E+M   G +P  +
Sbjct: 236 LFEEMKSTGPPP----NVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVV 291

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+S+ I      G VE A+     ++ A    N  C N ++    +  + D A ++    
Sbjct: 292 TYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEM 351

Query: 460 --------TLSKTQVALGEDYDGNTDR----ISNMEHKDKQSITNTPNFVPNSHYSSF-- 505
                     + + +  G    G+ ++    I  M++ + +     P+ V    YSS   
Sbjct: 352 KSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNME-----PSLVS---YSSLFH 403

Query: 506 ---DKRFS--------------FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
               KR S              +K   T Y+IL+K  C   D      LM EM    L+P
Sbjct: 404 GLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAP 463

Query: 547 NHISWTILI 555
           +  ++  L+
Sbjct: 464 DPSNFESLV 472


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 106/241 (43%), Gaps = 33/241 (13%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I++ N VR + +  ++  A + +   K     PN+Y    +ID    CG   ++  ++ D
Sbjct: 256 IVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFAD 315

Query: 282 LRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +       N   FN+LM  +V A   +  L+VY  M+KLG   D  +YN L++  C   N
Sbjct: 316 MLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIETHCRDEN 375

Query: 340 TVLAQEIYGEV----------------KHLEAK----GVLKL-----------DVFTYST 368
              A ++   +                +++E K    G  ++           +  TY+ 
Sbjct: 376 LENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNI 435

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++++FA +K   M LK+K+DM    V PN  T+  L+      G    A  LF+EM++  
Sbjct: 436 LMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEK 495

Query: 429 C 429
           C
Sbjct: 496 C 496



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 9/206 (4%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SP+ Y    +ID+ G    +  +  + + ++S+NV ++I  F  L+   V A      + 
Sbjct: 150 SPHPY--NEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVH 207

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            +  M+  G + D  +++I++           AQ  +  +K        + DV  Y+ +V
Sbjct: 208 CFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSLK-----DRFEPDVIVYTNLV 262

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           + +  A     A KV +DM  AG+ PN  T+S +I+A    G + +A  +F +ML +GC 
Sbjct: 263 RGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCA 322

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
           PN+   N L++  V+A + ++  +++
Sbjct: 323 PNAITFNNLMRVHVKAGRPEKVLQVY 348


>gi|115488188|ref|NP_001066581.1| Os12g0283900 [Oryza sativa Japonica Group]
 gi|113649088|dbj|BAF29600.1| Os12g0283900 [Oryza sativa Japonica Group]
          Length = 675

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 45/286 (15%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L+V   M + GV  D   Y  L+ AC    +  +A+E+Y  ++     GV+ L V  +  
Sbjct: 299 LKVLLGMDEAGVKPDRRDYERLVWACTGEEHYTIAKELYQRIRE-RGDGVISLSVCNH-- 355

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITW-------SSLINACANAGLVEQAMHLF 421
           ++ +   AK W  AL++ ED+L  G  PN +++       + L+NA    G+    + L 
Sbjct: 356 LIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIMSHFNILLNAAKRRGIWRWGVRLL 415

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR------------SWTLSKTQVALG 469
           ++M Q G +P S+  N +L AC  A +   A  +F+            S+    + +  G
Sbjct: 416 DKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIFKRMIDQGLTPDVVSYGALLSALEKG 475

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPN----------FVPNSHYSSFDKRF------SFKP 513
           + YD   + +   EH  K  +   PN          ++   +++  D           +P
Sbjct: 476 KLYD---EALRVWEHMCKVGV--KPNLHAYTILVSIYIGKGNHAMVDSVLRGMLSAKIEP 530

Query: 514 TTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDA 557
           T  T+N ++ AC  +     A    + M+   + PN I++ +LI+A
Sbjct: 531 TVVTFNAIISACVRNNKGGSAFEWFHRMKVQNIEPNEITYQMLIEA 576



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 13/211 (6%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDL-----RSQNVTLNIYV--FNSLMNVNAHD--L 305
           ++ +C  +I + G    +  +  IYEDL     +  N++  + +  FN L+N        
Sbjct: 349 SLSVCNHLIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIMSHFNILLNAAKRRGIW 408

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           ++ + +   MQ+ G+      +N +L AC  A  T  A +I+   K +  +G L  DV +
Sbjct: 409 RWGVRLLDKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIF---KRMIDQG-LTPDVVS 464

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y  ++      K +  AL+V E M   GV PN   ++ L++     G       +   ML
Sbjct: 465 YGALLSALEKGKLYDEALRVWEHMCKVGVKPNLHAYTILVSIYIGKGNHAMVDSVLRGML 524

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            A  EP     N ++ ACV   +   AF  F
Sbjct: 525 SAKIEPTVVTFNAIISACVRNNKGGSAFEWF 555



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 73/374 (19%), Positives = 146/374 (39%), Gaps = 55/374 (14%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSP------NMYICRTIIDVCGICGDYMKSR 276
           ++ + +R  GK+R L +A    +  K+   S       N ++   ++      G++ +  
Sbjct: 114 VYTSVIRGLGKERRLDAAFAVVEHLKRGSGSGGGGGGVNQFVYNCLLGAVKNSGEFGRIH 173

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
            +  D+ +Q V  NI  FN+LM++     K      V+  ++  G++   A+Y+ ++ A 
Sbjct: 174 DVLADMEAQGVPPNIVTFNTLMSIYVEQGKIDEVFRVFDTIEGSGLVPTAATYSTVMSAY 233

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS----TIVKVFADAKWWQM--------- 381
             AG+   A +   +++ +  KG L ++   +        K+     +  M         
Sbjct: 234 KKAGDAFAALKFITKLREMYNKGELAVNHEDWDREFVKFEKLTVRVCYMAMRRSLVGGEN 293

Query: 382 ----ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS-QCC 436
                LKV   M  AGV P+   +  L+ AC        A  L++ + + G    S   C
Sbjct: 294 PVGEVLKVLLGMDEAGVKPDRRDYERLVWACTGEEHYTIAKELYQRIRERGDGVISLSVC 353

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           N L+    +A ++  A  ++             ED      + +N+ +   + I +  N 
Sbjct: 354 NHLIWLMGKAKKWWAALEIY-------------EDLLDKGPKPNNLSY---ELIMSHFNI 397

Query: 497 VPNSHYSSFDKRF-----------SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVG 543
           + N+       R+             KP +  +N ++ AC        A  +   M   G
Sbjct: 398 LLNAAKRRGIWRWGVRLLDKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIFKRMIDQG 457

Query: 544 LSPNHISWTILIDA 557
           L+P+ +S+  L+ A
Sbjct: 458 LTPDVVSYGALLSA 471



 Score = 42.0 bits (97), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 85/206 (41%), Gaps = 6/206 (2%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
            +R  D  ++    P       ++  C    +   +  I++ +  Q +T ++  + +L++
Sbjct: 411 GVRLLDKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIFKRMIDQGLTPDVVSYGALLS 470

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                  +   L V+++M K+GV  ++ +Y IL+      GN  +   +   +  L AK 
Sbjct: 471 ALEKGKLYDEALRVWEHMCKVGVKPNLHAYTILVSIYIGKGNHAMVDSVLRGM--LSAK- 527

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            ++  V T++ I+           A +    M    + PN IT+  LI A    G    A
Sbjct: 528 -IEPTVVTFNAIISACVRNNKGGSAFEWFHRMKVQNIEPNEITYQMLIEALVQDGKPRLA 586

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQAC 443
             ++      G E  ++  + +++AC
Sbjct: 587 YEMYMRACNQGLELPAKSYDTVMEAC 612


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 8/199 (4%)

Query: 263 IDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           I + G C   M   A  ++E++  + +  N+  +NSL++    +      LE+   M   
Sbjct: 343 IMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDR 402

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G  +++ +YN +L A C   +   A  +  ++K    KG+ + D+FTY+ ++        
Sbjct: 403 GQPSNIITYNSILDAICKNNHVDKAIVLLTKIKE---KGI-QPDIFTYTVLINGLCKVGR 458

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A KV ED+L  G +PN  T++SLIN   N G  ++ + +  +M   GC PN+    I
Sbjct: 459 LDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEI 518

Query: 439 LLQACVEACQFDRAFRLFR 457
           L+ +  E  + D+A +L R
Sbjct: 519 LIHSLFEKDENDKAEKLLR 537



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 131/315 (41%), Gaps = 32/315 (10%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           SP++    ++I    + G    +  ++  + S N+  N+Y F+ L++    + K      
Sbjct: 230 SPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKN 289

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V   M K  V  D+ +YN L+   CL      A+ ++     +  +GV   DV++YS ++
Sbjct: 290 VLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNV---MAQRGVTP-DVWSYSIMI 345

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F   K    A+K+ E+M    + PN +T++SL++    +G    A+ L +EM   G  
Sbjct: 346 NGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQP 405

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM----EHKD 486
            N    N +L A  +    D+A  L         Q     D    T  I+ +       D
Sbjct: 406 SNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQ----PDIFTYTVLINGLCKVGRLDD 461

Query: 487 KQSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYNILMKACCTDYYRVK--ALMNEMRTV 542
            Q +              F+      + P   TY  L+   C   +  +  A++++M+  
Sbjct: 462 AQKV--------------FEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDN 507

Query: 543 GLSPNHISWTILIDA 557
           G  PN I++ ILI +
Sbjct: 508 GCIPNAITYEILIHS 522



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 132/333 (39%), Gaps = 47/333 (14%)

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNI 329
           Y  + ++ + +    +  +    N LMN  +    +KF+  V+  + K G   D  ++ I
Sbjct: 74  YQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTI 133

Query: 330 LLKACCLAG---------NTVLAQE-----------IYGEVKHLEAKGVLKL-------- 361
           L+K  CL G         + V+AQ            I G  +  E K  ++L        
Sbjct: 134 LIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKL 193

Query: 362 ---DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
              +V  YSTI+      K    A  +  +M+S  ++P+ +T+SSLI+     G ++ A+
Sbjct: 194 VRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAV 253

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478
            LF  M+     PN    +IL+    +  +   A          K  +A+    +   D 
Sbjct: 254 DLFNRMISDNINPNVYTFSILIDGFCKEGKVREA----------KNVLAVMMKKNVKLDV 303

Query: 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LM 536
           ++     D   +    N    S ++   +R    P   +Y+I++   C      +A  L 
Sbjct: 304 VTYNSLMDGYCLVKQVN-KAKSLFNVMAQR-GVTPDVWSYSIMINGFCKIKMVDEAMKLF 361

Query: 537 NEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            EM    + PN +++  L+D    SG    AL+
Sbjct: 362 EEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALE 394



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 87/180 (48%), Gaps = 12/180 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNV---NAHDLKFT 308
           PN+    +++D  G+C     S A+   +++  +    NI  +NS+++    N H  K  
Sbjct: 371 PNVVTYNSLVD--GLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAI 428

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           + + K  +K G+  D+ +Y +L+   C  G    AQ+++ +   L  KG    +++TY++
Sbjct: 429 VLLTKIKEK-GIQPDIFTYTVLINGLCKVGRLDDAQKVFED---LLVKG-YSPNIYTYTS 483

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F +  ++   L +   M   G  PN IT+  LI++       ++A  L  EM+  G
Sbjct: 484 LINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARG 543



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 67/348 (19%), Positives = 133/348 (38%), Gaps = 69/348 (19%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G+C  G+  K+   ++ + +Q   L+   + +L+N      + K  +++ + +    V  
Sbjct: 137 GLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRP 196

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           ++  Y+ ++ + C       A ++Y E+        +  DV TYS+++  F      + A
Sbjct: 197 NVVMYSTIIDSMCKDKLVNDAFDLYCEM----VSKRISPDVVTYSSLISGFCVVGKLKYA 252

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH----------------------- 419
           + +   M+S  + PN  T+S LI+     G V +A +                       
Sbjct: 253 VDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDG 312

Query: 420 ------------LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW---TLSKT 464
                       LF  M Q G  P+    +I++    +    D A +LF       +   
Sbjct: 313 YCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPN 372

Query: 465 QVALGEDYDG--NTDRIS-NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
            V      DG   + R S  +E  D+      P+                     TYN +
Sbjct: 373 VVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPS------------------NIITYNSI 414

Query: 522 MKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           + A C + +  KA  L+ +++  G+ P+  ++T+LI+     G ++ A
Sbjct: 415 LDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDA 462


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 136/342 (39%), Gaps = 64/342 (18%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI-- 278
           D ++   +  + K +D   A +      K+   P +     I+D  G+C       A+  
Sbjct: 77  DAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVD--GLCKAERTRDAVKL 134

Query: 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACC 335
            +++R +  + NIY +N ++     + K   E  K ++++   G   D+ +YN  +K  C
Sbjct: 135 LDEMRDKGCSPNIYTYNVIVEGLCEERKLD-EAKKMLEEMAVRGYFPDVVTYNSFIKGLC 193

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
                        E +   A+  +  DV +Y+T++     +     A ++ + M + G T
Sbjct: 194 KCDRV-------DEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCT 246

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +T+SSLI+     G VE+AM L + ML+ GC PN    N LL A            L
Sbjct: 247 PDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGA------------L 294

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
            R   + K +           D +  ME                        R  F P  
Sbjct: 295 HRLGHIGKAE-----------DMLVEME------------------------RRGFTPDV 319

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILI 555
            +YN  +   C      + KA+ + M   G +PN  S+++LI
Sbjct: 320 VSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLI 361



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/283 (19%), Positives = 114/283 (40%), Gaps = 23/283 (8%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N++ +N L+      H       V++ M       D  ++ ILL+  C +     A+++ 
Sbjct: 6   NVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLL 65

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
           G +K +   G +  D   Y+ ++  ++ AK +  A K   +M+     P  +T++++++ 
Sbjct: 66  GRMKEM---GCVPDDAI-YNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
              A     A+ L +EM   GC PN    N++++   E  + D A ++     + +    
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAV-RGYFP 180

Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
               Y+     +   +  D+                 F  R    P   +Y  ++   C 
Sbjct: 181 DVVTYNSFIKGLCKCDRVDEA--------------RKFLARMPVTPDVVSYTTVINGLCK 226

Query: 528 --DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             D      +++ M   G +P+ ++++ LID     G VE A+
Sbjct: 227 SGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAM 269



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 114/233 (48%), Gaps = 25/233 (10%)

Query: 245 DASKKHLS----SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           D ++K L+    +P++    T+I+  G+C  GD   +  + + + ++  T ++  ++SL+
Sbjct: 199 DEARKFLARMPVTPDVVSYTTVIN--GLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLI 256

Query: 299 N--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           +      +++  + +  +M KLG   +M +YN LL A    G+   A+++  E   +E +
Sbjct: 257 DGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVE---MERR 313

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI----------N 406
           G    DV +Y+  +     A+  + A  V + M+  G TPN  ++S LI          +
Sbjct: 314 GFTP-DVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLD 372

Query: 407 ACANAGLVEQAMHLFEEML-QAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
                G  ++A  LF ++L +  CEP+    N++L +  +  Q D+A ++ + 
Sbjct: 373 GLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQ 425



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 125/304 (41%), Gaps = 35/304 (11%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+ A+++++  ++   + + F  L+     ++ L+   ++   M+++G + D A YN L+
Sbjct: 25  KASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALI 84

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
                A +   A +   E+     K      V TY+ IV     A+  + A+K+ ++M  
Sbjct: 85  SGYSKAKDFGQAFKFLAEM----VKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRD 140

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G +PN  T++ ++        +++A  + EEM   G  P+    N  ++   +  + D 
Sbjct: 141 KGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDE 200

Query: 452 AFRLFRSW-----TLSKTQVALGEDYDGNTDRISNM-EHKDKQSITNTPNFVPNSHYSSF 505
           A +           +S T V  G    G+ D  S M +H   +  T              
Sbjct: 201 ARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCT-------------- 246

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
                  P   TY+ L+   C   +  R   L++ M  +G  PN +++  L+ A    G+
Sbjct: 247 -------PDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGH 299

Query: 564 VEGA 567
           +  A
Sbjct: 300 IGKA 303



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/298 (19%), Positives = 114/298 (38%), Gaps = 54/298 (18%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + + + +  F K  ++  A+   D+  K    PNM    +++      G   K+  +  +
Sbjct: 250 VTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVE 309

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLG----------VMADMASYNI 329
           +  +  T ++  +N+ ++    A  +K    V+  M + G          ++ D+  Y +
Sbjct: 310 MERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTV 369

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           LL   C  G    A  ++ +V  L+ K + + DVF Y+ ++      +    AL++ + M
Sbjct: 370 LLDGLCKGGRFDEACALFSKV--LDEK-ICEPDVFFYNVMLDSHCKRRQIDKALQIHKQM 426

Query: 390 LSA----------------------------------GVTPNTITWSSLINACANAGLVE 415
           L                                    G  P+ +T+ +L++A    G   
Sbjct: 427 LEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSA 486

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-----RSWTLSKTQVAL 468
            A+ LFEE ++ GC P+    + L+   V     + A+ LF     R W      + L
Sbjct: 487 AALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGL 544



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/178 (19%), Positives = 87/178 (48%), Gaps = 10/178 (5%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNV-TLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVM 321
           G+C  G + ++ A++  +  + +   +++ +N +++ +     +   L+++K M +    
Sbjct: 373 GLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNC- 431

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            ++ ++NIL+   C+      A+ +   +  +  +G +  D  TY T+V           
Sbjct: 432 CNVVTWNILVHGLCVDDRLSDAETM---LLTMVDEGFIP-DFVTYGTLVDAMCKCGKSAA 487

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           AL++ E+ +  G  P+ +T+S+LI    +  + E+A  LF ++++    P+ +   +L
Sbjct: 488 ALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLL 545


>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 140/328 (42%), Gaps = 37/328 (11%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
            P++     I+      G    + A Y+ L S+ V L+ Y  N ++N      +F   + 
Sbjct: 191 GPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAIN 250

Query: 311 VYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++K M+K+ G   D+ ++N LL    L G    AQE +     +  +G+    + T++T+
Sbjct: 251 LFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETF---DMMIGEGMAP-TIVTFNTL 306

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +A    +  AL+V   ++ A   P+ +++SSL+NA   AG  E+A  +F+ M Q   
Sbjct: 307 LGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSR 366

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ----------VALGEDYDGNTDRI 479
           +PN    N L+ A   A +++RA  L      ++ +           A          R 
Sbjct: 367 KPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFAACARARCPEKVRD 426

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEM 539
              E K +Q   N P F  N+  +++ +   F                     KAL+  M
Sbjct: 427 VFHEAKVRQIALNVPAF--NAAITAYIEAGQFD------------------EAKALLEVM 466

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
               L PN +++ +LI+A G  G+   A
Sbjct: 467 EEQNLRPNGVTFLLLINAAGSLGDYREA 494



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 107/232 (46%), Gaps = 8/232 (3%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +  N + + G+  D ++  +  +  K +   P++     ++ V  +CG   K++  ++ +
Sbjct: 234 IILNCLTKLGRFEDAINLFK--EMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMM 291

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
             + +   I  FN+L+   A    +T  L+V   + K     D+ SY+ LL A   AG  
Sbjct: 292 IGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYP 351

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             AQE++  +K    K     ++ T++ ++  +A A  ++ A ++  DM  A + PN +T
Sbjct: 352 EKAQEVFDLMKQRSRKP----NLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVT 407

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
             SL  ACA A   E+   +F E        N    N  + A +EA QFD A
Sbjct: 408 ICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEA 459



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 25/219 (11%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA--GVTPNTITWSSLINACANAGLVEQA 417
           K DV TY+ ++ V   A  W+ AL++ +DML A   + P+  ++++LINAC ++G   +A
Sbjct: 119 KPDVETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSGQWFKA 178

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
           + + + M   G  P+    NI+L A             F+S    +  VA    YD    
Sbjct: 179 LEICKRMTDNGVGPDLMTYNIILSA-------------FKSGGQPRHAVAY---YDHLIS 222

Query: 478 RISNMEHKDKQSITNTPNFVPNSH-----YSSFDKRFSFKPTTTTYNILMK--ACCTDYY 530
           +   ++      I N    +         +    K    +P   T+N L+   A C    
Sbjct: 223 KKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQIT 282

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           + +   + M   G++P  +++  L+ A    G    ALQ
Sbjct: 283 KAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQ 321



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P++    ++++  G  G   K++ +++ ++ ++   N+  FN LM+  A   K+    E+
Sbjct: 333 PDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERAREL 392

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
             +M +  +  ++ +   L  AC  A      ++++ E K  +    + L+V  ++  + 
Sbjct: 393 LHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHEAKVRQ----IALNVPAFNAAIT 448

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            + +A  +  A  + E M    + PN +T+  LINA  + G   +A  L+++M+  G   
Sbjct: 449 AYIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDYREARTLYDKMVDLGIPL 508

Query: 432 NSQCCNILLQACVEACQFDRAFRLF 456
             + C+ L+ A  +   ++ A  +F
Sbjct: 509 TVEPCSALINAFAKHGMYNEARTIF 533



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 90/213 (42%), Gaps = 10/213 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           + + +  FGK      A   +D  K+    PN+     ++D     G Y ++R +  D+ 
Sbjct: 338 YSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMA 397

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              +  N+    SL      A   +   +V+   +   +  ++ ++N  + A   AG   
Sbjct: 398 EARIEPNVVTICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFD 457

Query: 342 LAQEIYG--EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            A+ +    E ++L   GV      T+  ++        ++ A  + + M+  G+     
Sbjct: 458 EAKALLEVMEEQNLRPNGV------TFLLLINAAGSLGDYREARTLYDKMVDLGIPLTVE 511

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
             S+LINA A  G+  +A  +F++M +AGC+ N
Sbjct: 512 PCSALINAFAKHGMYNEARTIFDDMRKAGCKAN 544



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 108/253 (42%), Gaps = 27/253 (10%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+ +YN L+     AG    A +I+ ++  L+A   +     +Y+ ++     +  W  A
Sbjct: 121 DVETYNALMNVHGRAGQWRWALQIFDDM--LQAPKPIAPSRSSYNNLINACGSSGQWFKA 178

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           L++ + M   GV P+ +T++ +++A  + G    A+  ++ ++      +    NI+L  
Sbjct: 179 LEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHNIILNC 238

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
             +  +F+ A  LF+   + K     G + D  T       +     IT           
Sbjct: 239 LTKLGRFEDAINLFKE--MRKMN---GCEPDVVTFNALLHVYALCGQITKAQ-------- 285

Query: 503 SSFDKRF--SFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGL------SPNHISWTIL 554
            +FD        PT  T+N L+ A  +     +AL    + VGL       P+ +S++ L
Sbjct: 286 ETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEAL----QVVGLLVKAKFEPDVVSYSSL 341

Query: 555 IDACGGSGNVEGA 567
           ++A G +G  E A
Sbjct: 342 LNAFGKAGYPEKA 354



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 93/207 (44%), Gaps = 9/207 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN+    ++   C       K R ++ + + + + LN+  FN+ +   + A        +
Sbjct: 403 PNVVTICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKAL 462

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M++  +  +  ++ +L+ A    G+   A+ +Y ++  L     + L V   S ++ 
Sbjct: 463 LEVMEEQNLRPNGVTFLLLINAAGSLGDYREARTLYDKMVDLG----IPLTVEPCSALIN 518

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            FA    +  A  + +DM  AG   N +T++SL+ A     + + A    EEM+ AG  P
Sbjct: 519 AFAKHGMYNEARTIFDDMRKAGCKANVVTYTSLMIAYR---MYDDAQLACEEMVAAGITP 575

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRS 458
           +S     L  A  +A + ++  ++ +S
Sbjct: 576 DSIAFGTLFVALNKANRSEKVLQIEKS 602



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 10/187 (5%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQ 316
           C  +I+     G Y ++R I++D+R      N+  + SLM       D +   E    M 
Sbjct: 513 CSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTYTSLMIAYRMYDDAQLACE---EMV 569

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
             G+  D  ++  L  A   A  +   +++    K   A+G+L  DV  Y+  +   +  
Sbjct: 570 AAGITPDSIAFGTLFVALNKANRS---EKVLQIEKSSRARGILFDDV-AYTETLLACSRL 625

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQC 435
           K W+ AL + E M    +        +L++A   +G +++   +F E+ Q  G  P  Q 
Sbjct: 626 KDWETALFLYEGMKKRRLRLTNTMVINLLSAVGRSGKLDRLHKVFLELQQQIGFVPTLQM 685

Query: 436 CNILLQA 442
            NIL+ +
Sbjct: 686 YNILIDS 692


>gi|125579030|gb|EAZ20176.1| hypothetical protein OsJ_35776 [Oryza sativa Japonica Group]
          Length = 642

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 45/286 (15%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L+V   M + GV  D   Y  L+ AC    +  +A+E+Y  ++     GV+ L V  +  
Sbjct: 266 LKVLLGMDEAGVKPDRRDYERLVWACTGEEHYTIAKELYQRIRE-RGDGVISLSVCNH-- 322

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITW-------SSLINACANAGLVEQAMHLF 421
           ++ +   AK W  AL++ ED+L  G  PN +++       + L+NA    G+    + L 
Sbjct: 323 LIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIMSHFNILLNAAKRRGIWRWGVRLL 382

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR------------SWTLSKTQVALG 469
           ++M Q G +P S+  N +L AC  A +   A  +F+            S+    + +  G
Sbjct: 383 DKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIFKRMIDQGLTPDVVSYGALLSALEKG 442

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPN----------FVPNSHYSSFDKRF------SFKP 513
           + YD   + +   EH  K  +   PN          ++   +++  D           +P
Sbjct: 443 KLYD---EALRVWEHMCKVGV--KPNLHAYTILVSIYIGKGNHAMVDSVLRGMLSAKIEP 497

Query: 514 TTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDA 557
           T  T+N ++ AC  +     A    + M+   + PN I++ +LI+A
Sbjct: 498 TVVTFNAIISACVRNNKGGSAFEWFHRMKVQNIEPNEITYQMLIEA 543



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 13/211 (6%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDL-----RSQNVTLNIYV--FNSLMNVNAHD--L 305
           ++ +C  +I + G    +  +  IYEDL     +  N++  + +  FN L+N        
Sbjct: 316 SLSVCNHLIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIMSHFNILLNAAKRRGIW 375

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           ++ + +   MQ+ G+      +N +L AC  A  T  A +I+   K +  +G L  DV +
Sbjct: 376 RWGVRLLDKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIF---KRMIDQG-LTPDVVS 431

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y  ++      K +  AL+V E M   GV PN   ++ L++     G       +   ML
Sbjct: 432 YGALLSALEKGKLYDEALRVWEHMCKVGVKPNLHAYTILVSIYIGKGNHAMVDSVLRGML 491

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            A  EP     N ++ ACV   +   AF  F
Sbjct: 492 SAKIEPTVVTFNAIISACVRNNKGGSAFEWF 522



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 74/374 (19%), Positives = 146/374 (39%), Gaps = 55/374 (14%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSP------NMYICRTIIDVCGICGDYMKSR 276
           ++ + +R  GK+R L +A    +  K+   S       N ++   ++      G++ +  
Sbjct: 81  VYTSVIRGLGKERRLDAAFAVVEHLKRGSGSGGGGGGVNQFVYNCLLGAVKNSGEFGRIH 140

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
            +  D+ +Q V  NI  FN+LM++     K      V+  ++  G++   A+Y+ ++ A 
Sbjct: 141 DVLADMEAQGVPPNIVTFNTLMSIYVEQGKIDEVFRVFDTIEGSGLVPTAATYSTVMSAY 200

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD--AKWWQMA---------- 382
             AG+   A +   +++ +  KG L ++   +      F     +   MA          
Sbjct: 201 KKAGDAFAALKFITKLREMYNKGELAVNHEDWDREFVKFEKLTVRVCYMAMRRSLVGGEN 260

Query: 383 -----LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS-QCC 436
                LKV   M  AGV P+   +  L+ AC        A  L++ + + G    S   C
Sbjct: 261 PVGEVLKVLLGMDEAGVKPDRRDYERLVWACTGEEHYTIAKELYQRIRERGDGVISLSVC 320

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           N L+    +A ++  A  ++             ED      + +N+ +   + I +  N 
Sbjct: 321 NHLIWLMGKAKKWWAALEIY-------------EDLLDKGPKPNNLSY---ELIMSHFNI 364

Query: 497 VPNSHYSSFDKRF-----------SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVG 543
           + N+       R+             KP +  +N ++ AC        A  +   M   G
Sbjct: 365 LLNAAKRRGIWRWGVRLLDKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIFKRMIDQG 424

Query: 544 LSPNHISWTILIDA 557
           L+P+ +S+  L+ A
Sbjct: 425 LTPDVVSYGALLSA 438



 Score = 42.0 bits (97), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 85/206 (41%), Gaps = 6/206 (2%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
            +R  D  ++    P       ++  C    +   +  I++ +  Q +T ++  + +L++
Sbjct: 378 GVRLLDKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIFKRMIDQGLTPDVVSYGALLS 437

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                  +   L V+++M K+GV  ++ +Y IL+      GN  +   +   +  L AK 
Sbjct: 438 ALEKGKLYDEALRVWEHMCKVGVKPNLHAYTILVSIYIGKGNHAMVDSVLRGM--LSAK- 494

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            ++  V T++ I+           A +    M    + PN IT+  LI A    G    A
Sbjct: 495 -IEPTVVTFNAIISACVRNNKGGSAFEWFHRMKVQNIEPNEITYQMLIEALVQDGKPRLA 553

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQAC 443
             ++      G E  ++  + +++AC
Sbjct: 554 YEMYMRACNQGLELPAKSYDTVMEAC 579


>gi|108862483|gb|ABA97464.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 675

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 45/286 (15%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L+V   M + GV  D   Y  L+ AC    +  +A+E+Y  ++     GV+ L V  +  
Sbjct: 299 LKVLLGMDEAGVKPDRRDYERLVWACTGEEHYTIAKELYQRIRE-RGDGVISLSVCNH-- 355

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITW-------SSLINACANAGLVEQAMHLF 421
           ++ +   AK W  AL++ ED+L  G  PN +++       + L+NA    G+    + L 
Sbjct: 356 LIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIMSHFNILLNAAKRRGIWRWGVRLL 415

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR------------SWTLSKTQVALG 469
           ++M Q G +P S+  N +L AC  A +   A  +F+            S+    + +  G
Sbjct: 416 DKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIFKRMIDQGLTPDVVSYGALLSALEKG 475

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPN----------FVPNSHYSSFDKRF------SFKP 513
           + YD   + +   EH  K  +   PN          ++   +++  D           +P
Sbjct: 476 KLYD---EALRVWEHMCKVGV--KPNLHAYTILVSIYIGKGNHAMVDSVLRGMLSAKIEP 530

Query: 514 TTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDA 557
           T  T+N ++ AC  +     A    + M+   + PN I++ +LI+A
Sbjct: 531 TVVTFNAIISACVRNNKGGSAFEWFHRMKVQNIEPNEITYQMLIEA 576



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 13/211 (6%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDL-----RSQNVTLNIYV--FNSLMNVNAHD--L 305
           ++ +C  +I + G    +  +  IYEDL     +  N++  + +  FN L+N        
Sbjct: 349 SLSVCNHLIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIMSHFNILLNAAKRRGIW 408

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           ++ + +   MQ+ G+      +N +L AC  A  T  A +I+   K +  +G L  DV +
Sbjct: 409 RWGVRLLDKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIF---KRMIDQG-LTPDVVS 464

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y  ++      K +  AL+V E M   GV PN   ++ L++     G       +   ML
Sbjct: 465 YGALLSALEKGKLYDEALRVWEHMCKVGVKPNLHAYTILVSIYIGKGNHAMVDSVLRGML 524

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            A  EP     N ++ ACV   +   AF  F
Sbjct: 525 SAKIEPTVVTFNAIISACVRNNKGGSAFEWF 555



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 73/374 (19%), Positives = 146/374 (39%), Gaps = 55/374 (14%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSP------NMYICRTIIDVCGICGDYMKSR 276
           ++ + +R  GK+R L +A    +  K+   S       N ++   ++      G++ +  
Sbjct: 114 VYTSVIRGLGKERRLDAAFAVVEHLKRGSGSGGGGGGVNQFVYNCLLGAVKNSGEFGRIH 173

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
            +  D+ +Q V  NI  FN+LM++     K      V+  ++  G++   A+Y+ ++ A 
Sbjct: 174 DVLADMEAQGVPPNIVTFNTLMSIYVEQGKIDEVFRVFDTIEGSGLVPTAATYSTVMSAY 233

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS----TIVKVFADAKWWQM--------- 381
             AG+   A +   +++ +  KG L ++   +        K+     +  M         
Sbjct: 234 KKAGDAFAALKFITKLREMYNKGELAVNHEDWDREFVKFEKLTVRVCYMAMRRSLVGGEN 293

Query: 382 ----ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS-QCC 436
                LKV   M  AGV P+   +  L+ AC        A  L++ + + G    S   C
Sbjct: 294 PVGEVLKVLLGMDEAGVKPDRRDYERLVWACTGEEHYTIAKELYQRIRERGDGVISLSVC 353

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           N L+    +A ++  A  ++             ED      + +N+ +   + I +  N 
Sbjct: 354 NHLIWLMGKAKKWWAALEIY-------------EDLLDKGPKPNNLSY---ELIMSHFNI 397

Query: 497 VPNSHYSSFDKRF-----------SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVG 543
           + N+       R+             KP +  +N ++ AC        A  +   M   G
Sbjct: 398 LLNAAKRRGIWRWGVRLLDKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIFKRMIDQG 457

Query: 544 LSPNHISWTILIDA 557
           L+P+ +S+  L+ A
Sbjct: 458 LTPDVVSYGALLSA 471



 Score = 42.0 bits (97), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 85/206 (41%), Gaps = 6/206 (2%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
            +R  D  ++    P       ++  C    +   +  I++ +  Q +T ++  + +L++
Sbjct: 411 GVRLLDKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIFKRMIDQGLTPDVVSYGALLS 470

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                  +   L V+++M K+GV  ++ +Y IL+      GN  +   +   +  L AK 
Sbjct: 471 ALEKGKLYDEALRVWEHMCKVGVKPNLHAYTILVSIYIGKGNHAMVDSVLRGM--LSAK- 527

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            ++  V T++ I+           A +    M    + PN IT+  LI A    G    A
Sbjct: 528 -IEPTVVTFNAIISACVRNNKGGSAFEWFHRMKVQNIEPNEITYQMLIEALVQDGKPRLA 586

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQAC 443
             ++      G E  ++  + +++AC
Sbjct: 587 YEMYMSACNQGLELPAKSYDTVMEAC 612


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/453 (20%), Positives = 184/453 (40%), Gaps = 95/453 (20%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           R GRID   G+LK + + G  P    D   + +L +    L  +G+++            
Sbjct: 274 RAGRIDDAYGILKTMEDEGCGP----DVVTYTVLIDA---LCAAGKLD------------ 314

Query: 185 RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244
               KEL  + R      +KPD+              + +   + +FG   DL +  R +
Sbjct: 315 --KAKELYTKMRASS---HKPDL--------------VTYITLMSKFGNYGDLETVKRFW 355

Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNA 302
              +    +P++     +++     G   ++  + + +R + +  N++ +N+L++  +N 
Sbjct: 356 SEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNL 415

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
             L   LE++ NM+ LGV     SY + +      G+   A + + ++K    +G++   
Sbjct: 416 RRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKK---RGIMP-S 471

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           +   +  +   A+    + A  +  D+ + G++P+++T++ ++   + AG +++A  L  
Sbjct: 472 IAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLT 531

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
           EML  GCEP+    N L+    +A + D A+++F                          
Sbjct: 532 EMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRL----------------------- 568

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMR 540
                                   K     PT  TYNIL+     +   +KA  L   M+
Sbjct: 569 ------------------------KDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMK 604

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQ--CR 571
             G  PN +++  L+D    +  V+ AL+  CR
Sbjct: 605 ESGCPPNTVTFNALLDCLCKNDAVDLALKMFCR 637



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 6/182 (3%)

Query: 278  IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            I+E++       N  ++N L+N    A ++    +++K M K G+  D+ SY IL++   
Sbjct: 915  IFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLF 974

Query: 336  LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            + G    A   + E+K       L  D  +Y+ ++     ++  + AL +  +M + G++
Sbjct: 975  MTGRVDDAVHYFEELKLTG----LDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGIS 1030

Query: 396  PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            P   T+++LI    NAG+V+QA  +FEE+   G EPN    N L++   ++   DRAF +
Sbjct: 1031 PELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSV 1090

Query: 456  FR 457
            F+
Sbjct: 1091 FK 1092



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 143/357 (40%), Gaps = 31/357 (8%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           AL+ Y         P+M     ++   G   D      + E++ +  +  NIY +   + 
Sbjct: 211 ALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIR 270

Query: 300 V--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
           V   A  +     + K M+  G   D+ +Y +L+ A C AG    A+E+Y +++    K 
Sbjct: 271 VLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKP 330

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
               D+ TY T++  F +    +   +   +M + G  P+ +T++ L+ A   +G V+QA
Sbjct: 331 ----DLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQA 386

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVA--LGEDY 472
             + + M   G  PN    N L+   +   + D A  LF    S  ++ T  +  L  DY
Sbjct: 387 FDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDY 446

Query: 473 DGN----TDRISNMEHKDKQSITNTPNFVPNSHYSSFD--------------KRFSFKPT 514
            G        +   E   K+ I  +      S YS  +                    P 
Sbjct: 447 YGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPD 506

Query: 515 TTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           + TYN++MK  +      +   L+ EM + G  P+ I    LID    +G V+ A Q
Sbjct: 507 SVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQ 563



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 112/261 (42%), Gaps = 18/261 (6%)

Query: 309  LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            L+++  M+  G   ++ +YN+LL A    G +    E++     +  +G  K ++ T++ 
Sbjct: 808  LKLFVEMKNAGCCPNIFTYNLLLDA---HGKSKRIDELFELYNEMLCRGC-KPNIITHNI 863

Query: 369  IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            I+     +     AL +  +++S   +P   T+  LI     AG  E+AM +FEEM    
Sbjct: 864  IISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQ 923

Query: 429  CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            C+PN    NIL+    +A   + A  LF+       +  +  D    T  +        +
Sbjct: 924  CKPNCAIYNILINGFGKAGNVNIACDLFKRMI----KEGIRPDLKSYTILV--------E 971

Query: 489  SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
             +  T       HY    K     P T +YN+++          +AL   +EM+  G+SP
Sbjct: 972  CLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISP 1031

Query: 547  NHISWTILIDACGGSGNVEGA 567
               ++  LI   G +G V+ A
Sbjct: 1032 ELYTYNALILHFGNAGMVDQA 1052



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 147/358 (41%), Gaps = 31/358 (8%)

Query: 221  DILFCNFVREFGKKRDLVSALRAYDASKKHLSS---PNMYICRTIIDVCGICGDYMKSRA 277
            D L    +R   K++  + A + +D   K L +   P  Y C  ++D    C     +  
Sbjct: 752  DNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNC--LMDGLLGCNITEAALK 809

Query: 278  IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACC 335
            ++ ++++     NI+ +N L++ +    +     E+Y  M   G   ++ ++NI++ A  
Sbjct: 810  LFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALV 869

Query: 336  LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             + +   A ++Y E+      G       TY  ++     A   + A+K+ E+M      
Sbjct: 870  KSNSINKALDLYYEI----ISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCK 925

Query: 396  PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            PN   ++ LIN    AG V  A  LF+ M++ G  P+ +   IL++      + D A   
Sbjct: 926  PNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHY 985

Query: 456  FRSWTLSKTQVALGEDYDG-NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
            F    L+      G D D  + + + N   K ++           S +S    R    P 
Sbjct: 986  FEELKLT------GLDPDTVSYNLMINGLGKSRRLEEAL------SLFSEMKNR-GISPE 1032

Query: 515  TTTYNILM----KACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
              TYN L+     A   D  +   +  E++ +GL PN  ++  LI     SGN + A 
Sbjct: 1033 LYTYNALILHFGNAGMVD--QAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAF 1088



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 83/402 (20%), Positives = 149/402 (37%), Gaps = 67/402 (16%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
           F+  +GK  D   AL  ++  KK    P++  C   +      G   +++ I+ D+ +  
Sbjct: 443 FIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCG 502

Query: 287 VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           ++ +   +N +M     A  +    ++   M   G   D+   N L+     AG    A 
Sbjct: 503 LSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAW 562

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           +++G +K L+    L   V TY+ ++           AL +   M  +G  PNT+T+++L
Sbjct: 563 QMFGRLKDLK----LAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNAL 618

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--LS 462
           ++       V+ A+ +F  M    C P+    N ++   ++  +   AF  +      LS
Sbjct: 619 LDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLS 678

Query: 463 KTQVAL-----GEDYDGNTD---------------RISN-----------MEHKDKQSIT 491
              V L     G   DG  +               + SN           +E + +++I+
Sbjct: 679 PDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAIS 738

Query: 492 NTPNFVPNS--------------------------HYSSFDKRFSFKPTTTTYNILMKAC 525
                V NS                           +  F K     PT  +YN LM   
Sbjct: 739 FAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGL 798

Query: 526 --CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
             C        L  EM+  G  PN  ++ +L+DA G S  ++
Sbjct: 799 LGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRID 840



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 112/271 (41%), Gaps = 27/271 (9%)

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
            D+ F  ++   MQK  +  +  +Y  + KA  + G    A    G+++    +    L+
Sbjct: 139 EDMAFVFDL---MQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMR----QAGFVLN 191

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
            ++Y+ ++       + + ALKV + M+S G+ P+  T+S+L+ A          M L E
Sbjct: 192 AYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLE 251

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRI 479
           EM   G  PN     I ++    A + D A+ + ++          G D   Y    D +
Sbjct: 252 EMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTME----DEGCGPDVVTYTVLIDAL 307

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMN 537
                 DK     T     +SH          KP   TY  LM       D   VK   +
Sbjct: 308 CAAGKLDKAKELYT-KMRASSH----------KPDLVTYITLMSKFGNYGDLETVKRFWS 356

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           EM   G +P+ +++TIL++A   SG V+ A 
Sbjct: 357 EMEADGYAPDVVTYTILVEALCKSGKVDQAF 387



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 95/199 (47%), Gaps = 12/199 (6%)

Query: 240  ALRAYDASKKHLSSPNMYICRTIIDVCGICGDY-----MKSRAIYEDLRSQNVTLNIYVF 294
            A++ ++    +   PN  I   +I+  G  G+      +  R I E +R    +  I V 
Sbjct: 912  AMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVE 971

Query: 295  NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
               M     D    +  ++ ++  G+  D  SYN+++     +     A  ++ E+K+  
Sbjct: 972  CLFMTGRVDD---AVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKN-- 1026

Query: 355  AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
             +G+   +++TY+ ++  F +A     A K+ E++   G+ PN  T+++LI   + +G  
Sbjct: 1027 -RGI-SPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNK 1084

Query: 415  EQAMHLFEEMLQAGCEPNS 433
            ++A  +F++M+  GC PN+
Sbjct: 1085 DRAFSVFKKMMIVGCSPNA 1103



 Score = 45.4 bits (106), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 85/184 (46%), Gaps = 6/184 (3%)

Query: 227  FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
             +  FGK  ++  A   +    K    P++     +++   + G    +   +E+L+   
Sbjct: 934  LINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTG 993

Query: 287  VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
            +  +   +N ++N    +  L+  L ++  M+  G+  ++ +YN L+     AG    A 
Sbjct: 994  LDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAG 1053

Query: 345  EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
            +++ E++ +     L+ +VFTY+ +++  + +     A  V + M+  G +PN  T++ L
Sbjct: 1054 KMFEELQFMG----LEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109

Query: 405  INAC 408
             N C
Sbjct: 1110 PNKC 1113


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 140/323 (43%), Gaps = 42/323 (13%)

Query: 263 IDVCGICG-DYMKSRAIYEDLRSQNVTL-NIYVFNSLMNVNAHDLKF--TLEVYKNMQKL 318
           I V G C   ++K  A   DL +QN  L +++ +N L+     D K      +   M+ L
Sbjct: 287 ILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENL 346

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
            ++ D+ +YN L+  C    +++   E+   +  +E KGV K +  TY+ +VK +     
Sbjct: 347 KLLPDVVTYNTLINGCFDCSSSLKGFEL---IDKMEGKGV-KPNAVTYNVVVKWYVKEGK 402

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A      M  +G +P+ +T+++LIN    AG + +A  + +EM + G + NS   N 
Sbjct: 403 MDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNT 462

Query: 439 LLQACVEACQFDRAFRLFRSWT--------LSKTQVALGEDYDGNTDRISNM--EHKDKQ 488
           +L       + D A++L  S +        +S   + +G   DG +     +  E K+K+
Sbjct: 463 ILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKE 522

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
            I                      P+  TYN ++   C      +++  +NE+   GL P
Sbjct: 523 II----------------------PSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVP 560

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
           +  ++  +I      G VE A Q
Sbjct: 561 DETTYNTIILGYCREGQVEKAFQ 583



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 110/236 (46%), Gaps = 12/236 (5%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
           +V+E GK  +  + LR  + S     SP+     T+I+     G   ++  + +++  + 
Sbjct: 397 YVKE-GKMDNAGNELRKMEESG---FSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKG 452

Query: 287 VTLNIYVFNSLMNVNAHDLKFTLEVYK---NMQKLGVMADMASYNILLKACCLAGNTVLA 343
           + +N    N++++    + K   + YK   +  K G   D  SY  L+      G +V A
Sbjct: 453 LKMNSVTLNTILHTLCGERKLD-DAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEA 511

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            +++ E+K  E    +   + TY+T++     +     ++    ++L +G+ P+  T+++
Sbjct: 512 MKLWDEMKEKE----IIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNT 567

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           +I      G VE+A     +M++   +P+   CNILL+        D+A +LF +W
Sbjct: 568 IILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTW 623



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 145/378 (38%), Gaps = 53/378 (14%)

Query: 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254
           F+ VQ      D ++    AC  P       N ++    K +L++     +A  ++ S P
Sbjct: 132 FKKVQSLRVILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKP 191

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           ++Y+                S+AI+ D+    V +N   FN L+      + L   + + 
Sbjct: 192 SVYL----------------SKAIFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLI 235

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M+      D  SYN +L   C  G    A+++  ++K+    G+L  +  T++ +V  
Sbjct: 236 GKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKN---NGLLP-NRNTFNILVSG 291

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +    W + A +V + M    V P+  T++ LI      G +++A  L +EM      P+
Sbjct: 292 YCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPD 351

Query: 433 SQCCNILLQACVEACQFDRAFRLF--------RSWTLSKTQVALGEDYDGNTDRISNMEH 484
               N L+  C +     + F L         +   ++   V      +G  D   N   
Sbjct: 352 VVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELR 411

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTV 542
           K ++S                     F P   T+N L+   C      +A  +M+EM   
Sbjct: 412 KMEES--------------------GFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRK 451

Query: 543 GLSPNHISW-TILIDACG 559
           GL  N ++  TIL   CG
Sbjct: 452 GLKMNSVTLNTILHTLCG 469



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 84/185 (45%), Gaps = 6/185 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK--NMQKLGVMADMASY 327
           G  +++  ++++++ + +  +I  +N+++    H  K    + K   + + G++ D  +Y
Sbjct: 506 GKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTY 565

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N ++   C  G    A + + ++     K   K D+FT + +++          ALK+  
Sbjct: 566 NTIILGYCREGQVEKAFQFHNKM----VKKSFKPDLFTCNILLRGLCTEGMLDKALKLFN 621

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
             +S G   + +T++++I+        E+A  L  EM +    P+    N +L A  +A 
Sbjct: 622 TWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAG 681

Query: 448 QFDRA 452
           +   A
Sbjct: 682 RMKEA 686



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/148 (18%), Positives = 68/148 (45%), Gaps = 4/148 (2%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           ++++  M++  ++  + +YN ++   C +G T    +   ++  L   G++  D  TY+T
Sbjct: 512 MKLWDEMKEKEIIPSIITYNTMIGGLCHSGKT---DQSIDKLNELLESGLVP-DETTYNT 567

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I+  +      + A +    M+     P+  T + L+      G++++A+ LF   +  G
Sbjct: 568 IILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKG 627

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
              ++   N ++    +  +F+ AF L 
Sbjct: 628 KAIDAVTYNTIISGLCKEDRFEEAFDLL 655



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 58/322 (18%), Positives = 135/322 (41%), Gaps = 39/322 (12%)

Query: 124 IREGRIDCVVGVLKKLNELGVAPL-----ELFDG--------SGFKLLKNECQRLLDSGE 170
           ++EG++D     L+K+ E G +P       L +G          F+++    ++ L    
Sbjct: 398 VKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNS 457

Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230
           V +   L  +  E     ++LD+ ++++     +      + Y  ++             
Sbjct: 458 VTLNTILHTLCGE-----RKLDDAYKLLSSASKRGYFVDEVSYGTLI-----------MG 501

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVT 288
           + K    V A++ +D  K+    P++    T+I   G+C      ++I    +L    + 
Sbjct: 502 YFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIG--GLCHSGKTDQSIDKLNELLESGLV 559

Query: 289 LNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
            +   +N+++        ++   + +  M K     D+ + NILL+  C  G    A ++
Sbjct: 560 PDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKL 619

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
           +       +KG   +D  TY+TI+        ++ A  +  +M    + P+  T++++++
Sbjct: 620 FNT---WISKGK-AIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILS 675

Query: 407 ACANAGLVEQAMHLFEEMLQAG 428
           A A+AG +++A      +++ G
Sbjct: 676 ALADAGRMKEAEEFMSRIVEQG 697


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 11/179 (6%)

Query: 283 RSQNVTLNIYVFN----SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           R +    +++ +N    +L   NA  L +  E ++ MQ+ G   D  +Y+I+L+  C AG
Sbjct: 30  RQKGYQHSVFTYNCFLDALAKANAGQLAY--EKFQQMQRRGYPPDDFTYSIVLRGLCKAG 87

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM-LSAGVTPN 397
               A+E+ G+++     GV KL+V TYS ++     A     AL++ + M    G  P+
Sbjct: 88  ELDKAKELLGQLRE---SGV-KLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPD 143

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            +T++SL+    +   + +A  LFE M +AGCEPN    + LL    +A + D A RL+
Sbjct: 144 VVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLW 202



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 141/317 (44%), Gaps = 21/317 (6%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLG-VM 321
           G+C  G+  K++ +   LR   V LN+  ++ +++    A  +   LE++K M   G  +
Sbjct: 82  GLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCV 141

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            D+ ++N LLK  C +G  +   E +   +++ AK   + +V +YST++     A     
Sbjct: 142 PDVVTFNSLLKGLC-SGERM--SEAFVLFEYM-AKAGCEPNVISYSTLLDGLCKAGRLDE 197

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL- 440
           A ++ E+M+     P+ + ++S +     A  V +A     +M+  G + ++   + ++ 
Sbjct: 198 ACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIG 257

Query: 441 ----QACVEACQFDRAFRLFRSWTLSKT----QVALGEDYDGNTDRISNMEHKDKQSITN 492
               +   E  Q      L RS  L +     +  +  ++  + +  + + H   +S   
Sbjct: 258 ILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKS-KR 316

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHIS 550
            P+ V         K F   P   TYNI++   C        + L+NEM   GLSP+ ++
Sbjct: 317 LPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVT 376

Query: 551 WTILIDACGGSGNVEGA 567
           ++ L+D     G ++ A
Sbjct: 377 YSALVDGLCKLGKLDRA 393



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 9/190 (4%)

Query: 279 YEDLRSQNVTLNIYVFNSLMNV-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           +E++ S+N   +  +FN+L++         D     +  K+M++     ++ +YNI++  
Sbjct: 289 FEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDN 348

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C A     AQE+  E+    A   L  DV TYS +V           A  + E+M   G
Sbjct: 349 LCKAKQLDEAQELVNEM----ANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEG 404

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           V P++ T +S++NA + AG V+ A+   E M   G  P+    N LL    +A + D A 
Sbjct: 405 VFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAI 464

Query: 454 RLFRSWTLSK 463
                   +K
Sbjct: 465 TFLAKMVAAK 474



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 13/184 (7%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFT 308
           SP++     ++D  G+C  G   ++  + E++  + V  + +   S++N    A  + + 
Sbjct: 371 SPDVVTYSALVD--GLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYA 428

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L   + M+  G   D+ +YN LL   C AG   + + I    K + AK     DVF+Y+ 
Sbjct: 429 LSHLETMKARGSTPDLVTYNTLLDGLCKAGR--IDEAITFLAKMVAAK--CTPDVFSYTI 484

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I+     +     A  + ++M+  GV P+T+ + SL++  A  GL + A+ L +  L   
Sbjct: 485 IITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSL--- 541

Query: 429 CEPN 432
           C+P+
Sbjct: 542 CKPD 545



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 82/170 (48%), Gaps = 6/170 (3%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  +N +++    A  L    E+   M   G+  D+ +Y+ L+   C  G    A ++ 
Sbjct: 338 NLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL- 396

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             ++ +  +GV   D FT ++I+   + A     AL   E M + G TP+ +T+++L++ 
Sbjct: 397 --LEEMSKEGVFP-DSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDG 453

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
              AG +++A+    +M+ A C P+     I++ A   + Q   A  +F+
Sbjct: 454 LCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQ 503



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 82/212 (38%), Gaps = 50/212 (23%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           VFTY+  +   A A   Q+A +  + M   G  P+  T+S ++     AG +++A  L  
Sbjct: 38  VFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLG 97

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
           ++ ++G + N    ++++  C +A + D A  +F++ +     V                
Sbjct: 98  QLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCV---------------- 141

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMR 540
                                         P   T+N L+K  C+     +A  L   M 
Sbjct: 142 ------------------------------PDVVTFNSLLKGLCSGERMSEAFVLFEYMA 171

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
             G  PN IS++ L+D    +G ++ A  CR 
Sbjct: 172 KAGCEPNVISYSTLLDGLCKAGRLDEA--CRL 201



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 94/216 (43%), Gaps = 12/216 (5%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305
           K+    PN+     ++D         +++ +  ++ +  ++ ++  +++L++       L
Sbjct: 331 KEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKL 390

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE---AKGVLKLD 362
               ++ + M K GV  D  +   +L A   AG    A      + HLE   A+G    D
Sbjct: 391 DRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYA------LSHLETMKARGSTP-D 443

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           + TY+T++     A     A+     M++A  TP+  +++ +I A   +G    A  +F+
Sbjct: 444 LVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQ 503

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           EM++ G  P++   + LL         D A  L ++
Sbjct: 504 EMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKT 539


>gi|302768815|ref|XP_002967827.1| hypothetical protein SELMODRAFT_88115 [Selaginella moellendorffii]
 gi|300164565|gb|EFJ31174.1| hypothetical protein SELMODRAFT_88115 [Selaginella moellendorffii]
          Length = 289

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 11/169 (6%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           ++ D++ Q++  N   +N LM+  V A H+L   + V+K M   GV A +ASYNIL+ AC
Sbjct: 68  LFRDMK-QSIRPNHLSYNILMHSYVKAGHELTKVVSVFKEMYLRGVKASVASYNILIAAC 126

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF---ADAKWWQMALKVKEDMLS 391
                   A+  +  +K    K  L+ +V TYS+++ V+    D      AL V  +M+ 
Sbjct: 127 ATGKQAWEARVFFSNMK----KQDLEPNVITYSSLINVYVASGDVGNCAAALDVLREMVK 182

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           A V PN  T+S L++     G +E+AM +F+ M   G EP++   NIL+
Sbjct: 183 AEVMPNVTTFSCLLHGYGQEGRIEEAMKIFQTMKDLGIEPSAITFNILM 231



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 100/207 (48%), Gaps = 9/207 (4%)

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKN 314
           Y+   IIDV G    +  +  ++      +V  +  ++N+L++    A  L+   +++++
Sbjct: 12  YLRIHIIDVLGKASSFDIAVQVFNHFIKISVKKDAGMYNALLHAFCKAGKLEAVDDLFRD 71

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M++  +  +  SYNIL+ +   AG+ +   ++    K +  +GV K  V +Y+ ++   A
Sbjct: 72  MKQ-SIRPNHLSYNILMHSYVKAGHEL--TKVVSVFKEMYLRGV-KASVASYNILIAACA 127

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLIN---ACANAGLVEQAMHLFEEMLQAGCEP 431
             K    A     +M    + PN IT+SSLIN   A  + G    A+ +  EM++A   P
Sbjct: 128 TGKQAWEARVFFSNMKKQDLEPNVITYSSLINVYVASGDVGNCAAALDVLREMVKAEVMP 187

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRS 458
           N    + LL    +  + + A ++F++
Sbjct: 188 NVTTFSCLLHGYGQEGRIEEAMKIFQT 214


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 146/355 (41%), Gaps = 60/355 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + F   +    ++  +V A+   D   +    P      TI+D  G+C  GD + +  + 
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD--GMCKIGDTVSALDLL 242

Query: 280 EDLRS-QNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCL 336
             +    ++  N+ +++++++    D + +    ++  MQ+ G+  D+ +YN ++   C 
Sbjct: 243 RKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           +G    A+++  E+  LE K  +  DV TY+ ++  F     +  A ++ ++ML  G+ P
Sbjct: 303 SGRWSDAEQLLQEM--LERK--ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP 358

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           NTIT+SS+I+       ++ A H+F  M   GC PN    N L+     A + D    L 
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
                  T+  L  D                                           TT
Sbjct: 419 HEM----TETGLVAD-------------------------------------------TT 431

Query: 517 TYNILMKA--CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           TYN L+       D      L+ EM + GL P+ ++   L+D    +G ++ AL+
Sbjct: 432 TYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 148/356 (41%), Gaps = 48/356 (13%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           P+++   ++I   G C  G +  +  + +++  + ++ ++  +N+L+N    + KF    
Sbjct: 288 PDLFTYNSMI--VGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+Y  M   G++ +  +Y+ ++   C       A+ ++    +L A      ++ T++T+
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF----YLMATKGCSPNLITFNTL 401

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +  AK     +++  +M   G+  +T T+++LI+     G +  A+ L +EM+ +G 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN-------- 481
            P+   C+ LL    +  +   A  +F+    SK  +     ++G    +          
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 482 ------MEHKDKQSITNTPNFVPNS-HYSS-----------------FDKRFS--FKPTT 515
                 +E ++          VP++  YSS                 FD   S  F P  
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 516 TTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            T+  L+   C    RV     L  EM   G+  N I++  LI      GN+ GAL
Sbjct: 582 VTFTTLINGYCK-AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 22/256 (8%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----- 270
           I+P   I + + +  F K+  L +A   +        SPN+    T+ID  G CG     
Sbjct: 356 IIPNT-ITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID--GYCGAKRID 412

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           D M+   +  ++    +  +   +N+L++      DL   L++ + M   G+  D+ + +
Sbjct: 413 DGME---LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469

Query: 329 ILLKACCLAGNTVLAQEIYGEV----KHLEA----KGVLKLDVFTYSTIVKVFADAKWWQ 380
            LL   C  G    A E++  +    K L+A     GV + DV TY+ ++    +   + 
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV-EPDVQTYNILISGLINEGKFL 528

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A ++ E+M   G+ P+TIT+SS+I+       +++A  +F+ M      PN      L+
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588

Query: 441 QACVEACQFDRAFRLF 456
               +A + D    LF
Sbjct: 589 NGYCKAGRVDDGLELF 604



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 26/225 (11%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
           ++ D+++++ ++K F        AL     +   G+ P+ +T+++L++       V +A+
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGN 475
           +LF +M +  C PN      L+       +   A  L        L  TQ+  G   DG 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 476 ---TDRISNMEHKDK-QSITN-TPNFV----------PNSHYSSFDKRFS------FKPT 514
               D +S ++   K + I++  PN V           +  +S     F+        P 
Sbjct: 230 CKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 515 TTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
             TYN ++   C+   +   + L+ EM    +SP+ +++  LI+A
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 147/347 (42%), Gaps = 52/347 (14%)

Query: 245 DASKKHLSS----PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           DA+++ ++S    P+ Y    II   G+C  G   ++ ++ +D+  +    ++  +  L+
Sbjct: 130 DAARRLIASMPVAPDAYTYTPIIR--GLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLL 187

Query: 299 NVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                   F   +EV   M+  G   ++ +YN+++   C  G    A+E    +  L + 
Sbjct: 188 EAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF---LNRLSSY 244

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  + D  +Y+T++K    AK W+   ++  +M+     PN +T+  L+      G+VE+
Sbjct: 245 G-FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVER 303

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVAL 468
           A+ + E+M   GC  N+  CNI++    +  + D AF+   +         T+S T V  
Sbjct: 304 AIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLK 363

Query: 469 G----EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
           G    E ++   + +  M  K      N P                  P   T+N  +  
Sbjct: 364 GLCRAERWEDAKELLKEMVRK------NCP------------------PNEVTFNTFICI 399

Query: 525 CCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            C      +A  L+ +M   G   N +++  L++     G V+ AL+
Sbjct: 400 LCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 131/306 (42%), Gaps = 43/306 (14%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++ ++  +N   N   F+ L+        ++  ++V + M   G  A+    NI++   C
Sbjct: 272 LFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTIC 331

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G      + +  + ++ + G    D  +Y+T++K    A+ W+ A ++ ++M+     
Sbjct: 332 KQGRV---DDAFQFLNNMGSYGC-SPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCP 387

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFR 454
           PN +T+++ I      GL+EQA  L E+M + GCE N    N L+   CV+  + D A  
Sbjct: 388 PNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQG-RVDSALE 446

Query: 455 LFRSW-----TLSKTQVALG----EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
           LF S      T++ T +  G    E  D   + ++ M  KD                   
Sbjct: 447 LFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD------------------- 487

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGN 563
                  P   T+N+L+   C      +A  L+ +M   G +PN I++  L+D      N
Sbjct: 488 -----CAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCN 542

Query: 564 VEGALQ 569
            E AL+
Sbjct: 543 SEEALE 548



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 166/402 (41%), Gaps = 69/402 (17%)

Query: 90  FAMIVESVVVSEGNVSKFASMLSL--EMVASGIVKSI-----------REGRIDCVVGVL 136
           + +++E+V  S G    F   + +  EM A G   +I           REGR+D     L
Sbjct: 183 YTVLLEAVCKSTG----FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 238

Query: 137 KKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196
            +L+  G  P  +   S   +LK  C         E+F    E++E+  +P         
Sbjct: 239 NRLSSYGFQPDTV---SYTTVLKGLCAAKRWEDVEELFA---EMMEKNCMP--------- 283

Query: 197 IVQLCVNKPDVNLAIRYAC---IVPRA--------------DILFCNFV-REFGKKRDLV 238
                 N+   ++ +R+ C   +V RA              +   CN V     K+  + 
Sbjct: 284 ------NEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD 337

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNS 296
            A +  +    +  SP+     T++   G+C    +  ++ + +++  +N   N   FN+
Sbjct: 338 DAFQFLNNMGSYGCSPDTISYTTVLK--GLCRAERWEDAKELLKEMVRKNCPPNEVTFNT 395

Query: 297 LMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
            + +      ++    + + M + G   ++ +YN L+   C+ G    A E++  +    
Sbjct: 396 FICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--- 452

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
                K +  TY+T++    +A+    A ++  +ML     PN +T++ L++     GL+
Sbjct: 453 ----CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLM 508

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           ++A+ L E+M++ GC PN    N LL    + C  + A  L 
Sbjct: 509 DEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELL 550



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 6/169 (3%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N   + +L+    NA  L    E+   M +     ++ ++N+L+   C  G   L  E  
Sbjct: 456 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKG---LMDEAI 512

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             V+ +   G    ++ TY+T++         + AL++   ++S GV+P+ +T+SS+I  
Sbjct: 513 ELVEQMMEHGCTP-NLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 571

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            +    VE+A+ +F  +   G  P +   N +L A  + C  D A   F
Sbjct: 572 LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFF 620



 Score = 45.4 bits (106), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 6/154 (3%)

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++  ++   N+  FN L++       +   +E+ + M + G   ++ +YN LL       
Sbjct: 482 EMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDC 541

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           N+  A E+   +  L + GV   D+ TYS+I+ V +     + A+K+   +   G+ P  
Sbjct: 542 NSEEALEL---LHGLVSNGV-SPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKA 597

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           + ++ ++ A       + A+  F  M+  GC PN
Sbjct: 598 VIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPN 631


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 4/144 (2%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           LEV K M   G+  ++ +YN +L+    AG    A E + E+K    K   ++DV TY+T
Sbjct: 213 LEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMK----KRNCEIDVVTYTT 268

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +V  F  A   +    V ++M+  GV P+  T+++ I        VE A+ +FEEM++ G
Sbjct: 269 VVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKG 328

Query: 429 CEPNSQCCNILLQACVEACQFDRA 452
            EPN    N+L++    A +F R 
Sbjct: 329 YEPNVTTYNVLIRGLFHAGKFSRG 352



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 112/264 (42%), Gaps = 23/264 (8%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           ++++ NM + G   D+AS+N +L   C +     A E++  ++     G    D  TY+ 
Sbjct: 144 VKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALR-----GRFSADTVTYNV 198

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           IV  +   K    AL+V ++M+  G+ PN  T+++++     AG + QA   F EM +  
Sbjct: 199 IVNGWCLIKRTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRN 258

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           CE +      ++     A +  R   +F          ++   Y+     +       K 
Sbjct: 259 CEIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIREGVLPSVA-TYNAFIQVLCK-----KD 312

Query: 489 SITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGL 544
           S+ N            F++  R  ++P  TTYN+L++       + R + LM  M   G 
Sbjct: 313 SVENA--------VVMFEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGC 364

Query: 545 SPNHISWTILIDACGGSGNVEGAL 568
            PN  ++ ++I        VE AL
Sbjct: 365 EPNFQTYNMMIRYYSECSEVEKAL 388



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 89/185 (48%), Gaps = 6/185 (3%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+  + +++  + +  N+  +N+++     A  ++   E +  M+K     D+ +Y  ++
Sbjct: 211 KALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVV 270

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
               +AG     + ++ E   +  +GVL   V TY+  ++V       + A+ + E+M+ 
Sbjct: 271 HGFGVAGEIKRTRNVFDE---MIREGVLP-SVATYNAFIQVLCKKDSVENAVVMFEEMVR 326

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G  PN  T++ LI    +AG   +   L + M   GCEPN Q  N++++   E  + ++
Sbjct: 327 KGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEK 386

Query: 452 AFRLF 456
           A  LF
Sbjct: 387 ALGLF 391



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 93/192 (48%), Gaps = 6/192 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLE 310
           +PN+    T++      G   ++   + +++ +N  +++  + ++++    A ++K T  
Sbjct: 225 NPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRN 284

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+  M + GV+  +A+YN  ++  C   +   A  ++ E+     +   + +V TY+ ++
Sbjct: 285 VFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEM----VRKGYEPNVTTYNVLI 340

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +    A  +    ++ + M + G  PN  T++ +I   +    VE+A+ LFE+M    C 
Sbjct: 341 RGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGDCL 400

Query: 431 PNSQCCNILLQA 442
           PN    NIL+  
Sbjct: 401 PNLDTYNILISG 412


>gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 766

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 32/273 (11%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +YN L+   C AG    A+E+   V  ++  G+ K DV T +TIV          MA+  
Sbjct: 408 TYNCLIDGYCRAGKLETAKEV---VSRMKEDGI-KPDVVTVNTIVGGMCRHHGLNMAVLF 463

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             DM   GV  N +T+ +LI+AC +   +E+AMH F++ML+AGC P+++    L+    +
Sbjct: 464 FMDMEKEGVKGNVVTYMTLIHACCSLSNIEKAMHWFDKMLEAGCSPDAKIYYALISGLCQ 523

Query: 446 ACQFDRAFRLFR-------SWTLSKTQVALGEDYDGNT-----DRISNMEHKDKQSITNT 493
             +   A R+         S  L    + +G   D N      + +++ME +  +  + T
Sbjct: 524 VRRDHDAIRVVEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSIT 583

Query: 494 PN-----FVPNSHYSSFDKRF------SFKPTTTTYNILMKACCTDYYRVKALMNEMRTV 542
            N     F  +  + S ++           PT  TY  +++A C+     +AL    + +
Sbjct: 584 YNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVGELGEAL-KLFKDM 642

Query: 543 GL----SPNHISWTILIDACGGSGNVEGALQCR 571
           GL    +PN + + ILI+A    GN   AL  +
Sbjct: 643 GLRSKVNPNTVIYNILINAFSKLGNFGQALSLK 675



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/346 (20%), Positives = 131/346 (37%), Gaps = 52/346 (15%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN      +ID     G    ++ +   ++   +  ++   N+++      H L   +  
Sbjct: 404 PNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGMCRHHGLNMAVLF 463

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA---------------- 355
           + +M+K GV  ++ +Y  L+ ACC   N   A   +   K LEA                
Sbjct: 464 FMDMEKEGVKGNVVTYMTLIHACCSLSNIEKAMHWFD--KMLEAGCSPDAKIYYALISGL 521

Query: 356 -----------------KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
                            +G   LD+  Y+ ++ +F D    +   ++  DM   G+ P++
Sbjct: 522 CQVRRDHDAIRVVEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDS 581

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           IT+++LI+        E    + E+M +   +P       +++A     +   A +LF+ 
Sbjct: 582 ITYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVGELGEALKLFKD 641

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
                  + L    + NT  I N+      + +   NF          K    +P   TY
Sbjct: 642 -------MGLRSKVNPNT-VIYNILI---NAFSKLGNFGQALSLKEEMKMKMVRPNVETY 690

Query: 519 NILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDACGGS 561
           N L K C  +  + +    LM+EM      PN I+  IL++   GS
Sbjct: 691 NALFK-CLKEKNQAETLLKLMDEMVEQSCEPNQITMEILMERLSGS 735



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           A+  +D   +   SP+  I   +I  +C +  D+   R + E LR    +L++  +N L+
Sbjct: 495 AMHWFDKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVV-EKLREGGFSLDLLAYNMLI 553

Query: 299 NV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
            +  + ++ +   E+  +M+K G+  D  +YN L+       +    + +  +++  E  
Sbjct: 554 GLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDFESVERMMEQMREDE-- 611

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM-LSAGVTPNTITWSSLINACANAGLVE 415
             L   V TY  +++ +        ALK+ +DM L + V PNT+ ++ LINA +  G   
Sbjct: 612 --LDPTVATYGAVIEAYCSVGELGEALKLFKDMGLRSKVNPNTVIYNILINAFSKLGNFG 669

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           QA+ L EEM      PN +  N L +   E  Q +   +L 
Sbjct: 670 QALSLKEEMKMKMVRPNVETYNALFKCLKEKNQAETLLKLM 710



 Score = 42.0 bits (97), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 93/203 (45%), Gaps = 19/203 (9%)

Query: 250 HLSSPN-MYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMNVNAHDL- 305
           H  SPN +++ R I     +C +   + A  I  DL      L    FN+L++    ++ 
Sbjct: 253 HGVSPNSVWLTRFI---SSLCKNARTNAAWDILSDLMKNKAPLEAPPFNALLSCLGRNMN 309

Query: 306 --KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV--KHLEAKGVLKL 361
             +    V K M ++ +  D+ +  IL+   C +     A +++ ++  K  +   V+K 
Sbjct: 310 IGRMNALVLK-MDEMKIRPDVVTLGILINTLCKSRRVDEALQVFEQMCGKRTDDGNVIKA 368

Query: 362 DVFTYSTIV----KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
           D   ++T++    KV    +  ++ +++K   +     PNT+T++ LI+    AG +E A
Sbjct: 369 DSIHFNTLIDGLCKVGRLKEAEELLVRMK---MEERCVPNTVTYNCLIDGYCRAGKLETA 425

Query: 418 MHLFEEMLQAGCEPNSQCCNILL 440
             +   M + G +P+    N ++
Sbjct: 426 KEVVSRMKEDGIKPDVVTVNTIV 448


>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 154/337 (45%), Gaps = 28/337 (8%)

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           +A++ ++  +     PN+     +I + G  G + +   ++ED+++   + +I  +N+L+
Sbjct: 122 AAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLL 181

Query: 299 NV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           +V   N  D + +  V+K M++ G + +  ++N L+ +    G+   A  +Y  +  LEA
Sbjct: 182 SVFGQNGMDSEVS-GVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRM--LEA 238

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
            GV   D+ +Y+ ++   A    W+ + KV  +M      PN +T+ SL++A AN   +E
Sbjct: 239 -GV-NPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIE 296

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILL---QACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
           +   L EE+     EP +     L+     C    + +RAF   R    S     L    
Sbjct: 297 RMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLN--- 353

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL--MKACCTDYY 530
                  + +    ++ +    N + +       KR  F P+ TTYN L  M +   ++ 
Sbjct: 354 -------AMVSIYGRRQMVAKANEILDCM-----KRGGFTPSLTTYNSLMYMYSRSANFE 401

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           R + ++ E+   G+ P+ IS+  +I A   +G +  A
Sbjct: 402 RSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDA 438



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 78/149 (52%), Gaps = 4/149 (2%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           LE+   M + G+  D+ +Y  LL     AG    A +I+ E+++   +G  K ++ T++ 
Sbjct: 89  LELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRN---EGC-KPNICTFNA 144

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++K+  +   +   +KV ED+ +   +P+ +TW++L++     G+  +   +F+EM +AG
Sbjct: 145 LIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAG 204

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
             P     N L+ +      FD+A  +++
Sbjct: 205 FVPERDTFNTLISSYSRCGSFDQAMAVYK 233



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/222 (18%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           ++ +C+ +  +   +++       +     +  P   + +T++ V   C   M++   + 
Sbjct: 279 ELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFL 338

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           +LR +  + +I   N+++++      +    E+   M++ G    + +YN L+     + 
Sbjct: 339 ELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSA 398

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           N   ++EI   ++ + AKG+ + D+ +Y+T++  +      + A +V  +M  +G  P+ 
Sbjct: 399 NFERSEEI---LREILAKGI-RPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDI 454

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           IT+++ I + A   +  +A+ +   M++ GC+PN    N ++
Sbjct: 455 ITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIV 496



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 81/160 (50%), Gaps = 6/160 (3%)

Query: 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + +  +++ + +L++    A   K  +++++ M+  G   ++ ++N L+K     G    
Sbjct: 98  KGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTE 157

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
             +++ ++K  +       D+ T++T++ VF           V ++M  AG  P   T++
Sbjct: 158 MMKVFEDIKTFQCSP----DIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFN 213

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +LI++ +  G  +QAM +++ ML+AG  P+    N +L A
Sbjct: 214 TLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAA 253



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 7/193 (3%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           I PRA +L    V    K   L+   RA+   ++   SP++     ++ + G      K+
Sbjct: 310 IEPRA-VLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKA 368

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKA 333
             I + ++    T ++  +NSLM + +    F  + E+ + +   G+  D+ SYN ++ A
Sbjct: 369 NEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYA 428

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C  G    A  +  E++          D+ TY+T +  +A    +  A+ V   M+  G
Sbjct: 429 YCRNGRMRDASRVLSEMRESGPAP----DIITYNTFIASYAADSMFVEAIDVVCYMIKHG 484

Query: 394 VTPNTITWSSLIN 406
             PN  T++S+++
Sbjct: 485 CKPNQSTYNSIVD 497



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 46/199 (23%)

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           AL++K  M+  G+ P+  T+++L++    AG  + A+ +FEEM   GC+PN    N L++
Sbjct: 88  ALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIK 147

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP-NS 500
                 +F    ++F                            +D ++   +P+ V  N+
Sbjct: 148 MHGNRGKFTEMMKVF----------------------------EDIKTFQCSPDIVTWNT 179

Query: 501 HYSSFD---------------KRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVG 543
             S F                KR  F P   T+N L+ +   C  + +  A+   M   G
Sbjct: 180 LLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAG 239

Query: 544 LSPNHISWTILIDACGGSG 562
           ++P+  S+  ++ A    G
Sbjct: 240 VNPDLSSYNAVLAALARGG 258


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 147/347 (42%), Gaps = 52/347 (14%)

Query: 245 DASKKHLSS----PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           DA+++ ++S    P+ Y    II   G+C  G   ++ ++ +D+  +    ++  +  L+
Sbjct: 130 DAARRLIASMPVAPDAYTYTPIIR--GLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLL 187

Query: 299 NVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                   F   +EV   M+  G   ++ +YN+++   C  G    A+E    +  L + 
Sbjct: 188 EAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF---LNRLSSY 244

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  + D  +Y+T++K    AK W+   ++  +M+     PN +T+  L+      G+VE+
Sbjct: 245 G-FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVER 303

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVAL 468
           A+ + E+M   GC  N+  CNI++    +  + D AF+   +         T+S T V  
Sbjct: 304 AIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLK 363

Query: 469 G----EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
           G    E ++   + +  M  K      N P                  P   T+N  +  
Sbjct: 364 GLCRAERWEDAKELLKEMVRK------NCP------------------PNEVTFNTFICI 399

Query: 525 CCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            C      +A  L+ +M   G   N +++  L++     G V+ AL+
Sbjct: 400 LCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 131/306 (42%), Gaps = 43/306 (14%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++ ++  +N   N   F+ L+        ++  ++V + M   G  A+    NI++   C
Sbjct: 272 LFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTIC 331

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G      + +  + ++ + G    D  +Y+T++K    A+ W+ A ++ ++M+     
Sbjct: 332 KQGRV---DDAFQFLNNMGSYGC-SPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCP 387

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFR 454
           PN +T+++ I      GL+EQA  L E+M + GCE N    N L+   CV+  + D A  
Sbjct: 388 PNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQG-RVDSALE 446

Query: 455 LFRSW-----TLSKTQVALG----EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
           LF S      T++ T +  G    E  D   + ++ M  KD                   
Sbjct: 447 LFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD------------------- 487

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGN 563
                  P   T+N+L+   C      +A  L+ +M   G +PN I++  L+D      N
Sbjct: 488 -----CAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCN 542

Query: 564 VEGALQ 569
            E AL+
Sbjct: 543 SEEALE 548



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 165/402 (41%), Gaps = 69/402 (17%)

Query: 90  FAMIVESVVVSEGNVSKFASMLSL--EMVASGIVKSI-----------REGRIDCVVGVL 136
           + +++E+V  S G    F   + +  EM A G   +I           REGR+D     L
Sbjct: 183 YTVLLEAVCKSTG----FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 238

Query: 137 KKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196
            +L+  G  P  +   S   +LK  C         E+F    E++E+  +P         
Sbjct: 239 NRLSSYGFQPDTV---SYTTVLKGLCAAKRWEDVEELFA---EMMEKNCMP--------- 283

Query: 197 IVQLCVNKPDVNLAIRYAC---IVPRA--------------DILFCNFV-REFGKKRDLV 238
                 N+   ++ +R+ C   +V RA              +   CN V     K+  + 
Sbjct: 284 ------NEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD 337

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNS 296
            A +  +    +  SP+     T++   G+C    +  ++ + +++  +N   N   FN+
Sbjct: 338 DAFQFLNNMGSYGCSPDTISYTTVLK--GLCRAERWEDAKELLKEMVRKNCPPNEVTFNT 395

Query: 297 LMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
            + +      ++    + + M + G   ++ +YN L+   C+ G    A E++  +    
Sbjct: 396 FICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--- 452

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
                K +  TY+T++    +A+    A ++  +ML     PN +T++ L++     GL+
Sbjct: 453 ----CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLM 508

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           ++A+ L E+M++ GC PN    N LL      C  + A  L 
Sbjct: 509 DEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELL 550



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N   + +L+    NA  L    E+   M +     ++ ++N+L+   C  G   L  E  
Sbjct: 456 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKG---LMDEAI 512

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             V+ +   G    ++ TY+T++    +    + AL++   ++S GV+P+ +T+SS+I  
Sbjct: 513 ELVEQMMEHGCTP-NLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 571

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            +    VE+A+ +F  +   G  P +   N +L A  + C  D A   F
Sbjct: 572 LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFF 620



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 6/154 (3%)

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++  ++   N+  FN L++       +   +E+ + M + G   ++ +YN LL       
Sbjct: 482 EMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDC 541

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           N+  A E+   +  L + GV   D+ TYS+I+ V +     + A+K+   +   G+ P  
Sbjct: 542 NSEEALEL---LHGLVSNGV-SPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKA 597

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           + ++ ++ A       + A+  F  M+  GC PN
Sbjct: 598 VIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPN 631


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 146/355 (41%), Gaps = 60/355 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + F   +    ++  +V A+   D   +    P      TI+D  G+C  GD + +  + 
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD--GMCKKGDTVSALNLL 242

Query: 280 EDLRS-QNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCL 336
             +    ++  N+ +++++++    D + +    ++  MQ+ G+  D+ +YN ++   C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           +G    A+++  E+  LE K  +  DV TY+ ++  F     +  A ++ ++ML  G+ P
Sbjct: 303 SGRWSDAEQLLQEM--LERK--ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP 358

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           NTIT+SS+I+       ++ A H+F  M   GC PN    N L+     A + D    L 
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
                  T+  L  D                                           TT
Sbjct: 419 HEM----TETGLVAD-------------------------------------------TT 431

Query: 517 TYNILMKA--CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           TYN L+       D      L+ EM + GL P+ ++   L+D    +G ++ AL+
Sbjct: 432 TYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 148/356 (41%), Gaps = 48/356 (13%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           P+++   ++I   G C  G +  +  + +++  + ++ ++  +N+L+N    + KF    
Sbjct: 288 PDLFTYNSMI--VGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+Y  M   G++ +  +Y+ ++   C       A+ ++    +L A      ++ T++T+
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF----YLMATKGCSPNLITFNTL 401

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +  AK     +++  +M   G+  +T T+++LI+     G +  A+ L +EM+ +G 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN-------- 481
            P+   C+ LL    +  +   A  +F+    SK  +     ++G    +          
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 482 ------MEHKDKQSITNTPNFVPNS-HYSS-----------------FDKRFS--FKPTT 515
                 +E ++          VP++  YSS                 FD   S  F P  
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 516 TTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            T+  L+   C    RV     L  EM   G+  N I++  LI      GN+ GAL
Sbjct: 582 VTFTTLINGYCK-AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 22/256 (8%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----- 270
           I+P   I + + +  F K+  L +A   +        SPN+    T+ID  G CG     
Sbjct: 356 IIPNT-ITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID--GYCGAKRID 412

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           D M+   +  ++    +  +   +N+L++      DL   L++ + M   G+  D+ + +
Sbjct: 413 DGME---LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469

Query: 329 ILLKACCLAGNTVLAQEIYGEV----KHLEA----KGVLKLDVFTYSTIVKVFADAKWWQ 380
            LL   C  G    A E++  +    K L+A     GV + DV TY+ ++    +   + 
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV-EPDVQTYNILISGLINEGKFL 528

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A ++ E+M   G+ P+TIT+SS+I+       +++A  +F+ M      PN      L+
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588

Query: 441 QACVEACQFDRAFRLF 456
               +A + D    LF
Sbjct: 589 NGYCKAGRVDDGLELF 604



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 26/225 (11%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
           ++ D+++++ ++K F        AL     +   G+ P+ +T+++L++       V +A+
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDG- 474
           +LF +M +  C PN      L+       +   A  L        L  TQ+  G   DG 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 475 --NTDRIS--NMEHKDKQSITNTPNFV----------PNSHYSSFDKRFS------FKPT 514
               D +S  N+  K ++     PN V           +  +S     F+        P 
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 515 TTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
             TYN ++   C+   +   + L+ EM    +SP+ +++  LI+A
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334


>gi|125536310|gb|EAY82798.1| hypothetical protein OsI_38004 [Oryza sativa Indica Group]
          Length = 669

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 45/286 (15%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L+V   M + GV  D   Y  L+ AC    +  +A+E+Y  ++     GV+ L V  +  
Sbjct: 293 LKVLLGMDEAGVKPDRRDYERLVWACTGEEHYTIAKELYQRIRE-RGDGVISLSVCNH-- 349

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITW-------SSLINACANAGLVEQAMHLF 421
           ++ +   AK W  AL++ ED+L  G  PN +++       + L+NA    G+    + L 
Sbjct: 350 LIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIMSHFNILLNAAKRRGIWRWGVRLL 409

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR------------SWTLSKTQVALG 469
           ++M Q G +P S+  N +L AC  A +   A  +F+            S+    + +  G
Sbjct: 410 DKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIFKRMIDQGLTPDVVSYGALLSALEKG 469

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPN----------FVPNSHYSSFDKRF------SFKP 513
           + YD   + +   EH  K  +   PN          ++   +++  D           +P
Sbjct: 470 KLYD---EALRVWEHMCKVGV--KPNLHAYTILVSIYIGKGNHAMVDSVLRGMLSAKVEP 524

Query: 514 TTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDA 557
           T  T+N ++ AC  +     A    + M+   + PN I++ +LI+A
Sbjct: 525 TVVTFNAIISACVRNNKGGSAFEWFHRMKVQNIEPNEITYQMLIEA 570



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 13/211 (6%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDL-----RSQNVTLNIYV--FNSLMNVNAHD--L 305
           ++ +C  +I + G    +  +  IYEDL     +  N++  + +  FN L+N        
Sbjct: 343 SLSVCNHLIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIMSHFNILLNAAKRRGIW 402

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           ++ + +   MQ+ G+      +N +L AC  A  T  A +I+   K +  +G L  DV +
Sbjct: 403 RWGVRLLDKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIF---KRMIDQG-LTPDVVS 458

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y  ++      K +  AL+V E M   GV PN   ++ L++     G       +   ML
Sbjct: 459 YGALLSALEKGKLYDEALRVWEHMCKVGVKPNLHAYTILVSIYIGKGNHAMVDSVLRGML 518

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            A  EP     N ++ ACV   +   AF  F
Sbjct: 519 SAKVEPTVVTFNAIISACVRNNKGGSAFEWF 549



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 71/371 (19%), Positives = 146/371 (39%), Gaps = 52/371 (14%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSP---NMYICRTIIDVCGICGDYMKSRAIY 279
           ++ + +R  GK+R L +A    +  K+   S    N ++   ++      G++ +   + 
Sbjct: 111 VYTSVIRGLGKERRLDAAFAVVEHLKRGSGSGGGVNQFVYNCLLGAVKNSGEFGRIHDVL 170

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLA 337
            D+ +Q +  N+  FN+LM++     K      V+  ++  G++   A+Y+ ++ +   A
Sbjct: 171 ADMEAQGIPPNVVTFNTLMSIYVEQGKIDEVFRVFDTIEGSGLVPTAATYSTVMSSYKKA 230

Query: 338 GNTVLAQEIYGEVKHLEAKGVL------------KLDVFT----YSTIVKVFADAK-WWQ 380
           G+   A +   +++ +  KG L            K +  T    Y  + +     +    
Sbjct: 231 GDAFAALKFLTKLREMYNKGELAGNREDWDREFVKFEKLTVRVCYMAMRRSLVGGENPVG 290

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS-QCCNIL 439
             LKV   M  AGV P+   +  L+ AC        A  L++ + + G    S   CN L
Sbjct: 291 EVLKVLLGMDEAGVKPDRRDYERLVWACTGEEHYTIAKELYQRIRERGDGVISLSVCNHL 350

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
           +    +A ++  A  ++             ED      + +N+ +   + I +  N + N
Sbjct: 351 IWLMGKAKKWWAALEIY-------------EDLLDKGPKPNNLSY---ELIMSHFNILLN 394

Query: 500 SHYSSFDKRF-----------SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
           +       R+             KP +  +N ++ AC        A  +   M   GL+P
Sbjct: 395 AAKRRGIWRWGVRLLDKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIFKRMIDQGLTP 454

Query: 547 NHISWTILIDA 557
           + +S+  L+ A
Sbjct: 455 DVVSYGALLSA 465



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 85/206 (41%), Gaps = 6/206 (2%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
            +R  D  ++    P       ++  C    +   +  I++ +  Q +T ++  + +L++
Sbjct: 405 GVRLLDKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIFKRMIDQGLTPDVVSYGALLS 464

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                  +   L V+++M K+GV  ++ +Y IL+      GN  +   +   +  L AK 
Sbjct: 465 ALEKGKLYDEALRVWEHMCKVGVKPNLHAYTILVSIYIGKGNHAMVDSVLRGM--LSAK- 521

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            ++  V T++ I+           A +    M    + PN IT+  LI A    G    A
Sbjct: 522 -VEPTVVTFNAIISACVRNNKGGSAFEWFHRMKVQNIEPNEITYQMLIEALVQDGKPRLA 580

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQAC 443
             ++      G E  ++  + +++AC
Sbjct: 581 YEMYMRACNQGLELPAKSYDTVMEAC 606


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/348 (20%), Positives = 145/348 (41%), Gaps = 56/348 (16%)

Query: 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285
           N +R+  K   +    + Y +  +    P++Y    +I      GD +K + +  ++  +
Sbjct: 212 NLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE 271

Query: 286 NVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
               N++ +N+ +        +   LEV K M + G+  D  +Y +L+   C    +  A
Sbjct: 272 -CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEA 330

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
           + I+   + + + G L  + FTY+ ++  F      + AL++K++M++ G+  N +T+++
Sbjct: 331 KLIF---ESMPSSG-LNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNA 386

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           +I   A AG + +AM LF EML AG EP++   N+L+   +++    +A  L       K
Sbjct: 387 MIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARK 446

Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
                                                            P+  TY++L+ 
Sbjct: 447 -----------------------------------------------LTPSPFTYSVLIS 459

Query: 524 ACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             C  +D  +   ++++M   G+ PN   +  LI A       E A++
Sbjct: 460 GLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIE 507



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 153/331 (46%), Gaps = 43/331 (12%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-DLKFTLE-- 310
           PN +     I++    G+   +   ++D+ S  +  N  ++  L  +  H D+  T+E  
Sbjct: 554 PNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTIL--IKGHCDVGNTVEAL 611

Query: 311 -VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
             +K M + G++ D+ +Y+ ++ +    G T  A  ++  +K L+  GV+  DVF Y+++
Sbjct: 612 STFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVF--LKFLKT-GVVP-DVFLYNSL 667

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  F      + A ++ ++ML  G+ PN + +++LIN     G V +A  LF+E+ +   
Sbjct: 668 ISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDL 727

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY---------DGNTDRIS 480
            P+    + ++    ++     AF+LF    +SK     G  Y         +GN ++  
Sbjct: 728 VPDVVTYSTIIDGYCKSGNLTEAFKLFDE-MISKGISPDGYIYCILIDGCGKEGNLEKAL 786

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNE 538
           ++ H+ +Q                         + + +N L+ + C     ++A  L ++
Sbjct: 787 SLFHEAQQKSVG---------------------SLSAFNSLIDSFCKHGKVIEARELFDD 825

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           M    L+PN +++TILIDA G +  +E A Q
Sbjct: 826 MVDKKLTPNIVTYTILIDAYGKAEMMEEAEQ 856



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 149/344 (43%), Gaps = 33/344 (9%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEV 311
           P+ +    +ID      D  K+  +  +++++ +T + + ++ L++   H  DL+   EV
Sbjct: 414 PDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEV 473

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M + GV  ++  Y  L+KA        +A E+   +K + A GVL  D+F Y+ ++ 
Sbjct: 474 LDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIEL---LKIMIANGVLP-DLFCYNCLII 529

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               AK  + A  +  DM   G+ PN  T+ + IN  + +G ++ A   F++ML +G  P
Sbjct: 530 GLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVP 589

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS-NMEHKDKQSI 490
           N+    IL++   +      A   F+   L K  +     Y      +S N + K+   +
Sbjct: 590 NNVIYTILIKGHCDVGNTVEALSTFKC-MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGV 648

Query: 491 -------TNTPN-FVPNSHYSSFDKRFSFK---------------PTTTTYNILMKACCT 527
                     P+ F+ NS  S F K    +               P    YN L+   C 
Sbjct: 649 FLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCK 708

Query: 528 --DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             +  + + L +E+    L P+ ++++ +ID    SGN+  A +
Sbjct: 709 LGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFK 752



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           +VP    L+ + +  F K+ D+  A + YD    +  +PN+ +  T+I+  G+C  G+  
Sbjct: 657 VVPDV-FLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLIN--GLCKLGEVT 713

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+R +++++  +++  ++  ++++++    + +L    +++  M   G+  D   Y IL+
Sbjct: 714 KARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILI 773

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
             C   GN   A  ++ E +    K V  L  F  ++++  F        A ++ +DM+ 
Sbjct: 774 DGCGKEGNLEKALSLFHEAQQ---KSVGSLSAF--NSLIDSFCKHGKVIEARELFDDMVD 828

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
             +TPN +T++ LI+A   A ++E+A  LF +M      PN+
Sbjct: 829 KKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNT 870



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 132/320 (41%), Gaps = 55/320 (17%)

Query: 206 DVNLAIRY------ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYIC 259
           ++ +A RY      + IVP  ++++   ++      + V AL  +    +    P++   
Sbjct: 571 EIQVAERYFKDMLSSGIVPN-NVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAY 629

Query: 260 RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQK 317
             II      G   ++  ++       V  +++++NSL++      D++   ++Y  M  
Sbjct: 630 SAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLH 689

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            G+  ++  YN L+   C  G    A+E++ E++  +    L  DV TYSTI+  +  + 
Sbjct: 690 NGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKD----LVPDVVTYSTIIDGYCKSG 745

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM------------------- 418
               A K+ ++M+S G++P+   +  LI+ C   G +E+A+                   
Sbjct: 746 NLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNS 805

Query: 419 ---------------HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW---- 459
                           LF++M+     PN     IL+ A  +A   + A +LF       
Sbjct: 806 LIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRN 865

Query: 460 ----TLSKTQVALGEDYDGN 475
               TL+ T + L  +  GN
Sbjct: 866 IIPNTLTYTSLLLSYNQIGN 885



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 110/211 (52%), Gaps = 11/211 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           +++   +    K  ++  A   +D  ++    P++    TIID  G C  G+  ++  ++
Sbjct: 697 VVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIID--GYCKSGNLTEAFKLF 754

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           +++ S+ ++ + Y++  L++      +L+  L ++   Q+  V   ++++N L+ + C  
Sbjct: 755 DEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKH 813

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G  + A+E++ ++  ++ K  L  ++ TY+ ++  +  A+  + A ++  DM +  + PN
Sbjct: 814 GKVIEARELFDDM--VDKK--LTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPN 869

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           T+T++SL+ +    G   + + LF++M   G
Sbjct: 870 TLTYTSLLLSYNQIGNRFKMISLFKDMEARG 900



 Score = 42.0 bits (97), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 26/200 (13%)

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N   +   I+     G + +A  +F   +  G  P   CCN L++  ++A      ++++
Sbjct: 171 NLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVY 230

Query: 457 RSWT-------------LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN-SHY 502
            S               + K    +G+   G    +S ME + K ++     F+      
Sbjct: 231 GSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKM-VLSEMEKECKPNLFTYNAFIGGLCQT 289

Query: 503 SSFDKRFSFK---------PTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISW 551
            + D+    K         P   TY +L+   C        K +   M + GL+PN  ++
Sbjct: 290 GAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTY 349

Query: 552 TILIDACGGSGNVEGALQCR 571
           T LID     GN+E AL+ +
Sbjct: 350 TALIDGFIKEGNIEEALRIK 369


>gi|298715780|emb|CBJ28258.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1641

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 93/174 (53%), Gaps = 6/174 (3%)

Query: 263  IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGV 320
            I  C   G   +   +  ++ ++ V+ ++  +N+ M +  +A +    + + + M+  GV
Sbjct: 1158 IMACARAGQLEEGMFLLREMWAREVSRDVQTYNTAMALCKSAGEWTRAVGLLEAMEADGV 1217

Query: 321  MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             AD  ++N ++ AC    +   A  ++ +++    +  L  D++TY+++  V      W+
Sbjct: 1218 AADTVTFNTVIAACEAGADHWTAFSLFNQME----RAGLTPDLWTYNSLANVLGSCGEWE 1273

Query: 381  MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
             A+ + +DM + G+ P+ IT+S+L++AC  AG VE ++ L EEM + G + N +
Sbjct: 1274 RAVALLDDMRARGLRPDVITYSALVSACEKAGQVEASLSLLEEMAREGVDANER 1327



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 133/319 (41%), Gaps = 24/319 (7%)

Query: 257  YICRTIIDVCGICGDYMKSRAIYEDL-----RSQNVTLNIYVFNS--LMNVNAHDLKFTL 309
            Y     I   G  G +  +  + E L      S +  +   VFN+  +    A  L+  +
Sbjct: 1112 YSATAAISAYGRVGRWGDAVDLLETLLDDNDESTSTAVTTAVFNAGIMACARAGQLEEGM 1171

Query: 310  EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
             + + M    V  D+ +YN  +  C  AG    A    G ++ +EA GV   D  T++T+
Sbjct: 1172 FLLREMWAREVSRDVQTYNTAMALCKSAGEWTRA---VGLLEAMEADGVAA-DTVTFNTV 1227

Query: 370  VKVF-ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            +    A A  W  A  +   M  AG+TP+  T++SL N   + G  E+A+ L ++M   G
Sbjct: 1228 IAACEAGADHW-TAFSLFNQMERAGLTPDLWTYNSLANVLGSCGEWERAVALLDDMRARG 1286

Query: 429  CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED--YDGNTDRISNMEHKD 486
              P+    + L+ AC +A Q + +  L     +++  V   E           S      
Sbjct: 1287 LRPDVITYSALVSACEKAGQVEASLSLLEE--MAREGVDANERTFSAAIKSISSASSFSS 1344

Query: 487  KQSITNTPNFVPNSHYSSFDK-----RFSFKPTTTTYNILMKACCTD--YYRVKALMNEM 539
              S +++    P++ +    K     R   K    TY+  + AC  +  +    AL+ EM
Sbjct: 1345 SSSSSSSSETKPSASWQKVAKLHEEARRRGKANVVTYSAAISACAKEKRWRDALALLAEM 1404

Query: 540  RTVGLSPNHISWTILIDAC 558
            R  G+ PN  S++  + AC
Sbjct: 1405 RRDGIEPNDYSFSAAMWAC 1423



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 96/235 (40%), Gaps = 42/235 (17%)

Query: 352  HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML-----SAGVTPNTITWSSLIN 406
             LEA GV   + ++ +  +  +     W  A+ + E +L     S      T  +++ I 
Sbjct: 1101 ELEACGVTHTE-YSATAAISAYGRVGRWGDAVDLLETLLDDNDESTSTAVTTAVFNAGIM 1159

Query: 407  ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
            ACA AG +E+ M L  EM       + Q  N  +  C  A ++ RA  L  +        
Sbjct: 1160 ACARAGQLEEGMFLLREMWAREVSRDVQTYNTAMALCKSAGEWTRAVGLLEA-------- 1211

Query: 467  ALGEDYDGNTDRISNMEHKDKQSITNTPNFV------PNSHYSSFD-----KRFSFKPTT 515
                           ME     + T T N V         H+++F      +R    P  
Sbjct: 1212 ---------------MEADGVAADTVTFNTVIAACEAGADHWTAFSLFNQMERAGLTPDL 1256

Query: 516  TTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             TYN L      C ++ R  AL+++MR  GL P+ I+++ L+ AC  +G VE +L
Sbjct: 1257 WTYNSLANVLGSCGEWERAVALLDDMRARGLRPDVITYSALVSACEKAGQVEASL 1311



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 98/216 (45%), Gaps = 25/216 (11%)

Query: 261  TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
            T+I  C    D+  + +++  +    +T +++ +NSL NV  +  + +  + +  +M+  
Sbjct: 1226 TVIAACEAGADHWTAFSLFNQMERAGLTPDLWTYNSLANVLGSCGEWERAVALLDDMRAR 1285

Query: 319  GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA---- 374
            G+  D+ +Y+ L+ AC  AG    +  +  E+    A+  +  +  T+S  +K  +    
Sbjct: 1286 GLRPDVITYSALVSACEKAGQVEASLSLLEEM----AREGVDANERTFSAAIKSISSASS 1341

Query: 375  --------------DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
                           +  WQ   K+ E+    G   N +T+S+ I+ACA       A+ L
Sbjct: 1342 FSSSSSSSSSSETKPSASWQKVAKLHEEARRRGKA-NVVTYSAAISACAKEKRWRDALAL 1400

Query: 421  FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
              EM + G EPN    +  + ACV A +  RA +LF
Sbjct: 1401 LAEMRRDGIEPNDYSFSAAMWACVNADEGKRALQLF 1436



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 98/188 (52%), Gaps = 15/188 (7%)

Query: 253  SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
            +P+++   ++ +V G CG++ ++ A+ +D+R++ +  ++  +++L++    A  ++ +L 
Sbjct: 1253 TPDLWTYNSLANVLGSCGEWERAVALLDDMRARGLRPDVITYSALVSACEKAGQVEASLS 1312

Query: 311  VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG--EVK-----------HLEAKG 357
            + + M + GV A+  +++  +K+   A +   +       E K           H EA+ 
Sbjct: 1313 LLEEMAREGVDANERTFSAAIKSISSASSFSSSSSSSSSSETKPSASWQKVAKLHEEARR 1372

Query: 358  VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
              K +V TYS  +   A  K W+ AL +  +M   G+ PN  ++S+ + AC NA   ++A
Sbjct: 1373 RGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKRA 1432

Query: 418  MHLFEEML 425
            + LF  ++
Sbjct: 1433 LQLFATIM 1440



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLS-AGVTPNTITWSSLINACANAGLVEQAM 418
           K D +TY T +K    A  W++A+ +  ++    GV+P+   +++ I+AC+ AG  E+A+
Sbjct: 632 KADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSPDVYVYTAAISACSTAGRWEEAL 691

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            L  EM + G +PN+      + A     +++RA +
Sbjct: 692 DLEGEMRRRGIKPNAYTVTSCVSALARGGEWERAVQ 727



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 3/136 (2%)

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
           AD  +Y   +KA   AG   +A  +  E++ LE    +  DV+ Y+  +   + A  W+ 
Sbjct: 633 ADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEG---VSPDVYVYTAAISACSTAGRWEE 689

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           AL ++ +M   G+ PN  T +S ++A A  G  E+A+       + G   ++   N  L+
Sbjct: 690 ALDLEGEMRRRGIKPNAYTVTSCVSALARGGEWERAVQELIAAEEGGLPVSTPAYNAALK 749

Query: 442 ACVEACQFDRAFRLFR 457
           A             FR
Sbjct: 750 AFAIGKALQPGLDFFR 765



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 76/173 (43%), Gaps = 8/173 (4%)

Query: 290 NIYVFNSLMNV--NAHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEI 346
           + Y + + M     A   +  + +   +++L GV  D+  Y   + AC  AG    A ++
Sbjct: 634 DTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSPDVYVYTAAISACSTAGRWEEALDL 693

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
            GE++    +G+ K + +T ++ V   A    W+ A++        G+  +T  +++ + 
Sbjct: 694 EGEMRR---RGI-KPNAYTVTSCVSALARGGEWERAVQELIAAEEGGLPVSTPAYNAALK 749

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRS 458
           A A    ++  +  F  M + G  P + Q  NI ++ C E      A  + R+
Sbjct: 750 AFAIGKALQPGLDFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSTAVGILRA 802



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 14/111 (12%)

Query: 303  HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
             D    L + K+M++ GV   +  YN++L  C   G+   ++++           ++++D
Sbjct: 1531 EDFPRALALLKHMRRKGVRGSLGLYNLVLSMCERHGDAETSKKLLT---------LMRMD 1581

Query: 363  -----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
                 V + + +++    A  W+ AL +   M+S G++PN  T  S + AC
Sbjct: 1582 RVSPSVVSCNQVIRACEKAGRWEDALAILMAMVSGGISPNVYTVCSALRAC 1632


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 147/347 (42%), Gaps = 52/347 (14%)

Query: 245 DASKKHLSS----PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           DA+++ ++S    P+ Y    II   G+C  G   ++ ++ +D+  +    ++  +  L+
Sbjct: 161 DAARRLIASMPVAPDAYTYTPIIR--GLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLL 218

Query: 299 NVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                   F   +EV   M+  G   ++ +YN+++   C  G    A+E    +  L + 
Sbjct: 219 EAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF---LNRLSSY 275

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  + D  +Y+T++K    AK W+   ++  +M+     PN +T+  L+      G+VE+
Sbjct: 276 G-FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVER 334

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVAL 468
           A+ + E+M   GC  N+  CNI++    +  + D AF+   +         T+S T V  
Sbjct: 335 AIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLK 394

Query: 469 G----EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
           G    E ++   + +  M  K      N P                  P   T+N  +  
Sbjct: 395 GLCRAERWEDAKELLKEMVRK------NCP------------------PNEVTFNTFICI 430

Query: 525 CCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            C      +A  L+ +M   G   N +++  L++     G V+ AL+
Sbjct: 431 LCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 477



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 131/306 (42%), Gaps = 43/306 (14%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++ ++  +N   N   F+ L+        ++  ++V + M   G  A+    NI++   C
Sbjct: 303 LFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTIC 362

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G      + +  + ++ + G    D  +Y+T++K    A+ W+ A ++ ++M+     
Sbjct: 363 KQGR---VDDAFQFLNNMGSYGC-SPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCP 418

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFR 454
           PN +T+++ I      GL+EQA  L E+M + GCE N    N L+   CV+  + D A  
Sbjct: 419 PNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQG-RVDSALE 477

Query: 455 LFRSW-----TLSKTQVALG----EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
           LF S      T++ T +  G    E  D   + ++ M  KD                   
Sbjct: 478 LFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD------------------- 518

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGN 563
                  P   T+N+L+   C      +A  L+ +M   G +PN I++  L+D      N
Sbjct: 519 -----CAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCN 573

Query: 564 VEGALQ 569
            E AL+
Sbjct: 574 SEEALE 579



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 166/402 (41%), Gaps = 69/402 (17%)

Query: 90  FAMIVESVVVSEGNVSKFASMLSL--EMVASGIVKSI-----------REGRIDCVVGVL 136
           + +++E+V  S G    F   + +  EM A G   +I           REGR+D     L
Sbjct: 214 YTVLLEAVCKSTG----FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 269

Query: 137 KKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196
            +L+  G  P  +   S   +LK  C         E+F    E++E+  +P         
Sbjct: 270 NRLSSYGFQPDTV---SYTTVLKGLCAAKRWEDVEELFA---EMMEKNCMP--------- 314

Query: 197 IVQLCVNKPDVNLAIRYAC---IVPRA--------------DILFCNFV-REFGKKRDLV 238
                 N+   ++ +R+ C   +V RA              +   CN V     K+  + 
Sbjct: 315 ------NEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD 368

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNS 296
            A +  +    +  SP+     T++   G+C    +  ++ + +++  +N   N   FN+
Sbjct: 369 DAFQFLNNMGSYGCSPDTISYTTVLK--GLCRAERWEDAKELLKEMVRKNCPPNEVTFNT 426

Query: 297 LMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
            + +      ++    + + M + G   ++ +YN L+   C+ G    A E++  +    
Sbjct: 427 FICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--- 483

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
                K +  TY+T++    +A+    A ++  +ML     PN +T++ L++     GL+
Sbjct: 484 ----CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLM 539

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           ++A+ L E+M++ GC PN    N LL    + C  + A  L 
Sbjct: 540 DEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELL 581



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 6/169 (3%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N   + +L+    NA  L    E+   M +     ++ ++N+L+   C  G   L  E  
Sbjct: 487 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKG---LMDEAI 543

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             V+ +   G    ++ TY+T++         + AL++   ++S GV+P+ +T+SS+I  
Sbjct: 544 ELVEQMMEHGCTP-NLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 602

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            +    VE+A+ +F  +   G  P +   N +L A  + C  D A   F
Sbjct: 603 LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFF 651



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 6/154 (3%)

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++  ++   N+  FN L++       +   +E+ + M + G   ++ +YN LL       
Sbjct: 513 EMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDC 572

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           N+  A E+   +  L + GV   D+ TYS+I+ V +     + A+K+   +   G+ P  
Sbjct: 573 NSEEALEL---LHGLVSNGV-SPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKA 628

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           + ++ ++ A       + A+  F  M+  GC PN
Sbjct: 629 VIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPN 662


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 146/355 (41%), Gaps = 60/355 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + F   +    ++  +V A+   D   +    P      TI+D  G+C  GD + +  + 
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD--GMCKKGDTVSALNLL 242

Query: 280 EDLRS-QNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCL 336
             +    ++  N+ +++++++    D + +    ++  MQ+ G+  D+ +YN ++   C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           +G    A+++  E+  LE K  +  DV TY+ ++  F     +  A ++ ++ML  G+ P
Sbjct: 303 SGRWSDAEQLLQEM--LERK--ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP 358

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           NTIT+SS+I+       ++ A H+F  M   GC PN    N L+     A + D    L 
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
                  T+  L  D                                           TT
Sbjct: 419 HEM----TETGLVAD-------------------------------------------TT 431

Query: 517 TYNILMKA--CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           TYN L+       D      L+ EM + GL P+ ++   L+D    +G ++ AL+
Sbjct: 432 TYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 148/356 (41%), Gaps = 48/356 (13%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           P+++   ++I   G C  G +  +  + +++  + ++ ++  +N+L+N    + KF    
Sbjct: 288 PDLFTYNSMI--VGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+Y  M   G++ +  +Y+ ++   C       A+ ++    +L A      ++ T++T+
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF----YLMATKGCSPNLITFNTL 401

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +  AK     +++  +M   G+  +T T+++LI+     G +  A+ L +EM+ +G 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN-------- 481
            P+   C+ LL    +  +   A  +F+    SK  +     ++G    +          
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 482 ------MEHKDKQSITNTPNFVPNS-HYSS-----------------FDKRFS--FKPTT 515
                 +E ++          VP++  YSS                 FD   S  F P  
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 516 TTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            T+  L+   C    RV     L  EM   G+  N I++  LI      GN+ GAL
Sbjct: 582 VTFTTLINGYCK-AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 22/256 (8%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----- 270
           I+P   I + + +  F K+  L +A   +        SPN+    T+ID  G CG     
Sbjct: 356 IIPNT-ITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID--GYCGAKRID 412

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           D M+   +  ++    +  +   +N+L++      DL   L++ + M   G+  D+ + +
Sbjct: 413 DGME---LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469

Query: 329 ILLKACCLAGNTVLAQEIYGEV----KHLEA----KGVLKLDVFTYSTIVKVFADAKWWQ 380
            LL   C  G    A E++  +    K L+A     GV + DV TY+ ++    +   + 
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV-EPDVQTYNILISGLINEGKFL 528

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A ++ E+M   G+ P+TIT+SS+I+       +++A  +F+ M      PN      L+
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588

Query: 441 QACVEACQFDRAFRLF 456
               +A + D    LF
Sbjct: 589 NGYCKAGRVDDGLELF 604



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 26/225 (11%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
           ++ D+++++ ++K F        AL     +   G+ P+ +T+++L++       V +A+
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDG- 474
           +LF +M +  C PN      L+       +   A  L        L  TQ+  G   DG 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 475 --NTDRIS--NMEHKDKQSITNTPNFV----------PNSHYSSFDKRFS------FKPT 514
               D +S  N+  K ++     PN V           +  +S     F+        P 
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 515 TTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
             TYN ++   C+   +   + L+ EM    +SP+ +++  LI+A
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 146/355 (41%), Gaps = 60/355 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + F   +    ++  +V A+   D   +    P      TI+D  G+C  GD + +  + 
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD--GMCKKGDTVSALNLL 242

Query: 280 EDLRS-QNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCL 336
             +    ++  N+ +++++++    D + +    ++  MQ+ G+  D+ +YN ++   C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           +G    A+++  E+  LE K  +  DV TY+ ++  F     +  A ++ ++ML  G+ P
Sbjct: 303 SGRWSDAEQLLQEM--LERK--ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP 358

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           NTIT+SS+I+       ++ A H+F  M   GC PN    N L+     A + D    L 
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
                  T+  L  D                                           TT
Sbjct: 419 HEM----TETGLVAD-------------------------------------------TT 431

Query: 517 TYNILMKA--CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           TYN L+       D      L+ EM + GL P+ ++   L+D    +G ++ AL+
Sbjct: 432 TYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 148/356 (41%), Gaps = 48/356 (13%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           P+++   ++I   G C  G +  +  + +++  + ++ ++  +N+L+N    + KF    
Sbjct: 288 PDLFTYNSMI--VGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+Y  M   G++ +  +Y+ ++   C       A+ ++    +L A      ++ T++T+
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF----YLMATKGCSPNLITFNTL 401

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +  AK     +++  +M   G+  +T T+++LI+     G +  A+ L +EM+ +G 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN-------- 481
            P+   C+ LL    +  +   A  +F+    SK  +     ++G    +          
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 482 ------MEHKDKQSITNTPNFVPNS-HYSS-----------------FDKRFS--FKPTT 515
                 +E ++          VP++  YSS                 FD   S  F P  
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 516 TTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            T+  L+   C    RV     L  EM   G+  N I++  LI      GN+ GAL
Sbjct: 582 VTFTTLINGYCK-AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 111/277 (40%), Gaps = 30/277 (10%)

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             + +Y+ M++  +  D+ S+NIL+K  C       A   +G++  L     L  DV T+
Sbjct: 97  LVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLG----LHPDVVTF 152

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++           AL +   M      PN +T+++L+N     G + +A+ L + M++
Sbjct: 153 TTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMME 212

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI-SNMEHK 485
            G +P       ++    +      A  L R        +     Y    D +  +  H 
Sbjct: 213 DGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHS 272

Query: 486 DKQSITNT-------PN-FVPNSHYSSF--DKRFS-------------FKPTTTTYNILM 522
           D Q++          P+ F  NS    F    R+S               P   TYN L+
Sbjct: 273 DAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332

Query: 523 KACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
            A   +  ++  + L +EM   G+ PN I+++ +ID 
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 22/256 (8%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----- 270
           I+P   I + + +  F K+  L +A   +        SPN+    T+ID  G CG     
Sbjct: 356 IIPNT-ITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID--GYCGAKRID 412

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           D M+   +  ++    +  +   +N+L++      DL   L++ + M   G+  D+ + +
Sbjct: 413 DGME---LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469

Query: 329 ILLKACCLAGNTVLAQEIYGEV----KHLEA----KGVLKLDVFTYSTIVKVFADAKWWQ 380
            LL   C  G    A E++  +    K L+A     GV + DV TY+ ++    +   + 
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV-EPDVQTYNILISGLINEGKFL 528

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A ++ E+M   G+ P+TIT+SS+I+       +++A  +F+ M      PN      L+
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588

Query: 441 QACVEACQFDRAFRLF 456
               +A + D    LF
Sbjct: 589 NGYCKAGRVDDGLELF 604


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 23/266 (8%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L++   M + G  +D+ +YN+++   C  G    A  +  +     AKG +  DVFT++T
Sbjct: 411 LQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAI---AKGYVP-DVFTFNT 466

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  +      +  +++   M S GVTP+ IT++S++N  + A   E  M  FE M++ G
Sbjct: 467 LIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKG 526

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRL---FRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
           C PN    NIL ++  +A + + A  L     +  ++   V+      G  +   N + K
Sbjct: 527 CVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFAN---NGDLK 583

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVG 543
               +           +    +++    TT TYNI++ A     D +  + L  EM   G
Sbjct: 584 GAYQL-----------FRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGG 632

Query: 544 LSPNHISWTILIDACGGSGNVEGALQ 569
            +P+  ++ ++ID    +GN +   +
Sbjct: 633 CAPDTYTYRVMIDGFCITGNTDSGYK 658



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 7/228 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  V  F ++   V A   ++   +    P++     ++      G+  +S  +   
Sbjct: 182 VAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNK 241

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  N++ FN  +        L   + +  ++ + G+  D+ +YN L+   C   N
Sbjct: 242 VLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSN 301

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            V A++      H    G L+ D FTY+T++  +      Q A K+ +  +  G  P+  
Sbjct: 302 VVEAEKYL----HKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEF 357

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEA 446
           T+ SLIN       +++A+ LF   L  G +P     N+L++  C E 
Sbjct: 358 TYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEG 405



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 128/327 (39%), Gaps = 31/327 (9%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   ++  ++E +   N   ++  +N++MN  V +   K   +V+  M+ +G++ D+ ++
Sbjct: 90  GKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTF 149

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            I +K+ C       A  +   + ++ ++G  +L+   Y T+V  F +  +   A ++  
Sbjct: 150 TIRIKSFCRTKRPHSALRL---LNNMVSQGC-QLNAVAYCTVVAGFYEENYRVEAYELFN 205

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           DML  G+ P+  T++ L++     G V+++  L  ++L+ G   N    NI +Q      
Sbjct: 206 DMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKG 265

Query: 448 QFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
               A  +  S          ++   +  G   + N        HK          F  N
Sbjct: 266 MLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYN 325

Query: 500 SHYSSFDKRF---------------SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
           +    + K                  F P   TY  L+   C   +  R  AL N     
Sbjct: 326 TLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGK 385

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
           GL P  I + +LI      G +  ALQ
Sbjct: 386 GLKPTVILYNMLIKGLCQEGLILQALQ 412


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 108/269 (40%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     YK + + G  A +  +NIL+   C  G+  +AQ ++  +     K  L+  V 
Sbjct: 119 FKLVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI----TKWGLRPSVV 174

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  ML++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 175 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEM 234

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  +++   LS+                     
Sbjct: 235 LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKR-MLSQ--------------------- 272

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
                                    S  P   TYN L+   C   D  +   L++EM   
Sbjct: 273 -------------------------SLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMK 307

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ I++T LID C   G+++ A + R
Sbjct: 308 GLKPDKITYTTLIDGCCKEGDLDTAFEHR 336



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 127/294 (43%), Gaps = 24/294 (8%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++++++ +    +  ++  +N+LMN  +   DL     +   M   GV  D+ +Y
Sbjct: 152 GDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 211

Query: 328 NILLKACCLAGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           ++L+   C       A E++ E  VK L   GV      T++T++          +A+++
Sbjct: 212 SVLINGLCKESKMDDANELFDEMLVKGLVPNGV------TFTTLIDGHCKNGRVDLAMEI 265

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + MLS  + P+ IT+++LI      G ++QA HL +EM   G +P+      L+  C +
Sbjct: 266 YKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCK 325

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
               D AF   +       Q  +  D    T  IS +  + +         V        
Sbjct: 326 EGDLDTAFEHRK----RMIQENIXLDDVAYTALISGLCQEGRS--------VDAEKMLRE 373

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
                 KP   TY +++   C   D ++   L+ EM+  G  P+ +++ +L++ 
Sbjct: 374 MLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 144/357 (40%), Gaps = 33/357 (9%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DI +F   +  + +   L  A+  Y  +++H        CR +++       +     
Sbjct: 65  RSDIFVFSGLITAYLESEFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 124

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            Y+ +       ++Y FN LM+      D++    V+  + K G+   + SYN L+    
Sbjct: 125 FYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 184

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 185 RLGD---LDEGFRLKSAMLASGV-QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 240

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++LI+     G V+ AM +++ ML     P+    N L+    +     +A  L
Sbjct: 241 PNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHL 300

Query: 456 FRSWT---LSKTQVALGEDYDG---NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
               +   L   ++      DG     D  +  EH+ +    N                 
Sbjct: 301 IDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQEN----------------- 343

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
                   Y  L+   C +   V A  ++ EM +VGL PN  ++T++I+     G+V
Sbjct: 344 -IXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDV 399



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +  IY+ + SQ++  ++  +N+L+       DLK   
Sbjct: 241 PNGVTFTTLID--GHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 298

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +   M   G+  D  +Y  L+  CC  G+   A E     K +  + +  LD   Y+ +
Sbjct: 299 HLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFE---HRKRMIQENI-XLDDVAYTAL 354

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +MLS G+ PN  T++ +IN     G V +   L +EM + G 
Sbjct: 355 ISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 414

Query: 430 EPNSQCCNILLQA 442
            P+    N+L+  
Sbjct: 415 VPSVVTYNVLMNG 427


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 141/336 (41%), Gaps = 56/336 (16%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN 299
           +AY    +   SP++    TIID  G+C      RA  +++ +  + V  N   +N++++
Sbjct: 211 KAYSLFLEMGVSPDVVTYNTIID--GLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIID 268

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
               A ++     V++ M   GV     +YN ++   C A     A+ ++   + +  +G
Sbjct: 269 GLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVF---QQMIDRG 325

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
           V K D  TY+TI+     A+    A  V + M+  GV P+ +T++ +I+    A  V++A
Sbjct: 326 V-KPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRA 384

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
             +F++M+  G +PN+   N L+   +   Q++   +                       
Sbjct: 385 EGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQ----------------------- 421

Query: 478 RISNMEHKDKQSITNT---------PNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACC 526
           RI  M   D +    T          N   N   S FD   R   KP+ T Y I++    
Sbjct: 422 RIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHG-- 479

Query: 527 TDYYRVKALMNEMRTV-------GLSPNHISWTILI 555
              Y  K  ++EM  +       G+SPNH  +  +I
Sbjct: 480 ---YGKKGALSEMHDLLNLMVANGISPNHRIFNTVI 512



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 114/243 (46%), Gaps = 6/243 (2%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +F   +  + K+  +   +  +   K+   SPN+    T+ID     G    +   +  +
Sbjct: 507 IFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQM 566

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            ++ VT N  VFNSL+         +   E++  M   G+  D+  +N +L   C  G  
Sbjct: 567 INEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRV 626

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
           + A+ +   +  +   G LK DV +Y+T++     A     A+K+ + M+SAG+ PN ++
Sbjct: 627 MEARRL---IDSMVCMG-LKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVS 682

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +++L++    AG ++ A  LF EML+ G  P  +  N +L     + +F  A  L+ +  
Sbjct: 683 YNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMI 742

Query: 461 LSK 463
            S+
Sbjct: 743 KSR 745



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 119/272 (43%), Gaps = 24/272 (8%)

Query: 287 VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           V+ NI V N   N    D  ++L       ++GV  D+ +YN ++   C A     A+++
Sbjct: 194 VSYNI-VINGFFNEGQVDKAYSL-----FLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDV 247

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
           +   + +  KGV K +  TY+TI+     A+   MA  V + M+  GV P+ +T++++I+
Sbjct: 248 F---QQMVEKGV-KPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIID 303

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
               A  V++A  +F++M+  G +P+    N ++    +A   D+A  +F+         
Sbjct: 304 GLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMI------ 357

Query: 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
               D     D ++     D      + +          DK    KP   TYN L+    
Sbjct: 358 ----DKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDK--GVKPNNGTYNCLIHGYL 411

Query: 527 T--DYYRVKALMNEMRTVGLSPNHISWTILID 556
           +   +  V   + EM    L P+  ++ +L+D
Sbjct: 412 STGQWEEVVQRIKEMSAHDLEPDVFTYGLLLD 443



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 125/313 (39%), Gaps = 29/313 (9%)

Query: 267 GICGDYMKSRAIYEDLRSQ---NVTLNIYVFNSLMN-----VNAHDLKFTLEVYKNMQKL 318
           G+C       A++  LR        L +  +N+L+        A + +  L +  + Q  
Sbjct: 128 GLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDS 187

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
               D+ SYNI++      G    A  ++ E+        +  DV TY+TI+     A+ 
Sbjct: 188 SCSPDVVSYNIVINGFFNEGQVDKAYSLFLEMG-------VSPDVVTYNTIIDGLCKAQE 240

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A  V + M+  GV PN +T++++I+    A  V+ A  +F++M+  G +P++   N 
Sbjct: 241 VDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNT 300

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           ++    +A   DRA  +F+             D     D ++     D        +   
Sbjct: 301 IIDGLCKAQAVDRAEGVFQQMI----------DRGVKPDHVTYNTIIDGLCKAQAIDKAE 350

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILID 556
                  DK    KP   TY I++   C      R + +  +M   G+ PN+ ++  LI 
Sbjct: 351 GVFQQMIDK--GVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIH 408

Query: 557 ACGGSGNVEGALQ 569
               +G  E  +Q
Sbjct: 409 GYLSTGQWEEVVQ 421



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 132/333 (39%), Gaps = 35/333 (10%)

Query: 254 PNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P+     TIID  G+C      K+  +++ +  + V  +   +  +++    A  +    
Sbjct: 328 PDHVTYNTIID--GLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAE 385

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            V++ M   GV  +  +YN L+      G     +E+   +K + A   L+ DVFTY  +
Sbjct: 386 GVFQQMIDKGVKPNNGTYNCLIHGYLSTGQW---EEVVQRIKEMSAHD-LEPDVFTYGLL 441

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A  + + M+  G+ P+   +  +++     G + +   L   M+  G 
Sbjct: 442 LDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGI 501

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG--NTDRISNMEH 484
            PN +  N ++ A  +    D    +F   +   LS   V  G   D      R+ +   
Sbjct: 502 SPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVL 561

Query: 485 KDKQSITN--TPN-FVPNS---------HYSSFDKRF------SFKPTTTTYNILMKACC 526
           +  Q I    TPN  V NS          +   ++ F        +P    +N ++   C
Sbjct: 562 QFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLC 621

Query: 527 TDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
            +   ++A  L++ M  +GL P+ IS+  LID 
Sbjct: 622 KEGRVMEARRLIDSMVCMGLKPDVISYNTLIDG 654



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 98/209 (46%), Gaps = 10/209 (4%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310
           SPN  I  T+I  C      M      I+  ++ Q ++ N+  + +L++      +    
Sbjct: 502 SPNHRIFNTVI--CAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDA 559

Query: 311 V--YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           V  +  M   GV  +   +N L+   C        +E++ E+ +   +G+ + D+  ++T
Sbjct: 560 VLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLN---QGI-RPDIVFFNT 615

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++           A ++ + M+  G+ P+ I++++LI+    A  +++A+ L + M+ AG
Sbjct: 616 VLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAG 675

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +PN    N LL    +A + D A+ LFR
Sbjct: 676 LKPNIVSYNTLLHGYCKAGRIDNAYCLFR 704



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 103/214 (48%), Gaps = 18/214 (8%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310
           +PN  +  ++  V G+C    + K   ++ ++ +Q +  +I  FN+++  N       +E
Sbjct: 572 TPNNVVFNSL--VYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVL-CNLCKEGRVME 628

Query: 311 VYK---NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA--KGVLKLDVFT 365
             +   +M  +G+  D+ SYN L+   C A     A      VK L+      LK ++ +
Sbjct: 629 ARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEA------VKLLDGMVSAGLKPNIVS 682

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+T++  +  A     A  +  +ML  GVTP   T+++++N    +G   +A  L+  M+
Sbjct: 683 YNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMI 742

Query: 426 QAGCEPNSQCCNILLQA-CVEACQFDRAFRLFRS 458
           ++    +    +I+L   C   C FD AF++F+S
Sbjct: 743 KSRKLWSICTYSIILDGFCKNNC-FDEAFKIFQS 775



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 40/207 (19%), Positives = 93/207 (44%), Gaps = 10/207 (4%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTL 309
           P++    T++  C +C  G  M++R + + +    +  ++  +N+L++ +  A  +   +
Sbjct: 608 PDIVFFNTVL--CNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAV 665

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   M   G+  ++ SYN LL   C AG        Y   + +  KGV    V TY+TI
Sbjct: 666 KLLDGMVSAGLKPNIVSYNTLLHGYCKAGRI---DNAYCLFREMLRKGVTP-GVETYNTI 721

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +     +  +  A ++  +M+ +    +  T+S +++        ++A  +F+ +     
Sbjct: 722 LNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDL 781

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF 456
           + +    NI++    +  + + A  LF
Sbjct: 782 QLDIITFNIMIDGLFKGGRKEDAMDLF 808


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 131/294 (44%), Gaps = 33/294 (11%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           ++  +N++M+    +  ++  L ++  M++LG   +  S+N ++   C       A +++
Sbjct: 114 DVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVF 173

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            E   +EAK +   D ++Y  ++   A A     A K+ + ML +G+TP+ +T++ +I+ 
Sbjct: 174 HE---MEAKDIPP-DSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHG 229

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
              A  +++A+ LF+ M   GC P+    NIL+ A  +  + D AFRL +  T     V 
Sbjct: 230 MCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMT-DDGHVP 288

Query: 468 LGEDYDG------NTDRISNMEH--KDKQSITNTPNFVP-NSHYSSFDKRFSFK------ 512
               Y        +  R+ +  H  +D       P  V  N+      K    K      
Sbjct: 289 DVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVL 348

Query: 513 ---------PTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILI 555
                    P   TYN L+   C      R + L+++M   GL+PN +++T L+
Sbjct: 349 DAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALV 402



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 128/321 (39%), Gaps = 55/321 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SP+ +    +ID     G    +R +++ L    VT +   + SL++    A+      E
Sbjct: 7   SPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARE 66

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++ +M + G      +YN+++ A C  G   + +E    +K +   G +  DV TY+T++
Sbjct: 67  LFADMNRRGCPPSPVTYNVMIDASCKRG---MLEEACDLIKKMIEDGHVP-DVVTYNTVM 122

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                +   + AL +  +M   G TPN  + +++I        ++QA  +F EM      
Sbjct: 123 DGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIP 182

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P+S    IL+    +A + + A++LF+    S                            
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFQRMLDS---------------------------- 214

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNH 548
                                 P+  TYN+++   C  Y   +A  L   MR+ G  P+ 
Sbjct: 215 -------------------GITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSR 255

Query: 549 ISWTILIDACGGSGNVEGALQ 569
            ++ ILIDA    G ++ A +
Sbjct: 256 FTFNILIDAHCKRGKLDEAFR 276



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 6/199 (3%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +R + ED+  +     +   N+L++    A  +K   EV   M   G   D+ +YN L+ 
Sbjct: 309 ARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVH 368

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C AG T  A+E+  +   + A+G L  +V TY+ +V     A     A  V   M S+
Sbjct: 369 GHCRAGQTERARELLSD---MVARG-LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS 424

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G  PN  T+++LI    +AG V+  + LF EM+ AG  P+      L     ++ +  RA
Sbjct: 425 GCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARA 484

Query: 453 FRLFRSWTLSKTQVALGED 471
             + R    S    A G++
Sbjct: 485 LEILREGRESLRSEAWGDE 503



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 35/225 (15%)

Query: 267 GICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMA 322
           G+C  Y    A+  ++ +RS+    + + FN L++ +    K      + K M   G + 
Sbjct: 229 GMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVP 288

Query: 323 DMASYNILLKACCLAGN------------------TVLAQE--IYGEVKH---LEAKGVL 359
           D+ +Y+ L+   C                      TV+ Q   I+G  K     EA+ VL
Sbjct: 289 DVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVL 348

Query: 360 KL--------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
                     DV TY+T+V     A   + A ++  DM++ G+ PN +T+++L++    A
Sbjct: 349 DAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKA 408

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             + +A  +F +M  +GC PN      L+     A Q D   +LF
Sbjct: 409 NRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLF 453


>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
 gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
          Length = 853

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 140/330 (42%), Gaps = 33/330 (10%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           T+I + G    +   + + +++   +    +  +N +++    A+ LK  ++V++ MQ+ 
Sbjct: 365 TMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEA 424

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  +Y  L+     AG   +A ++YG ++ +     L  D FTYS +V        
Sbjct: 425 GYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVG----LSPDTFTYSAMVNCLGKGGQ 480

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A K+  +M+  G TPN +T++ +I   A A   E  + L+++M  AG  P+    +I
Sbjct: 481 LAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSI 540

Query: 439 LLQACVEACQFDRAFRLF----RSWTLSKTQVALGEDY---DGNTDRISNMEHKDKQSIT 491
           +++        D A  +F    R W   +    L  D     GN D+         Q   
Sbjct: 541 VMEVLGHCGHLDEAEAVFIEMRRDWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGL 600

Query: 492 NTPNFVP--NSHYSSFDKRFSFK---------------PTTTTYNILMKACCTDYYRVKA 534
             PN VP  NS  S+F K   F+               P+  TY +L+ +CCT+      
Sbjct: 601 Q-PN-VPTCNSLLSAFLKMNRFQDAYIVLQNMLAQGLVPSVQTYTLLL-SCCTEAQAQMG 657

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           L  ++  +   P H+    L DA  G  NV
Sbjct: 658 LCGQLMAITGHPAHMFLLYLPDAEPGGQNV 687



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 122/283 (43%), Gaps = 43/283 (15%)

Query: 305 LKFTLEVYKNMQ--KLGVMADMASYNILLKACCLAGNTVLA-----QEIYGEVKHLEAKG 357
           L+   + Y  +Q  K G M +    N+  K      N VL          G  + L+ + 
Sbjct: 295 LRSVEQYYHTLQQMKWGPMTEHVLDNLHCKIDAFQANQVLKLLHDHTVALGFFQWLKRQP 354

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
             K D  TY+T++ +   A+ + +  K+ ++M  A   P  +T++ +I+A   A  +++A
Sbjct: 355 GFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEA 414

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YD- 473
           + +FEEM +AG EP+      L+    +A   D A  L+        +V L  D   Y  
Sbjct: 415 VKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYG----RMQEVGLSPDTFTYSA 470

Query: 474 -----GNTDRISNMEHKDKQSITN--TPNFVPNSHYSSFDKRFSFKPTTTTYNIL--MKA 524
                G   +++       + I N  TPN V                   TYNI+  ++A
Sbjct: 471 MVNCLGKGGQLAAAYKLFCEMIENGCTPNLV-------------------TYNIMIALQA 511

Query: 525 CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              +Y  V  L  +M+  G  P+ I+++I+++  G  G+++ A
Sbjct: 512 KARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEA 554



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 129/301 (42%), Gaps = 25/301 (8%)

Query: 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214
           F+ LK +     D       +G++    +F +  K LDE  R    C  KP V       
Sbjct: 347 FQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRA--HC--KPTV------- 395

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
                  + +   +  +G+   L  A++ ++  ++    P+     T+ID+    G    
Sbjct: 396 -------VTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDI 448

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +  +Y  ++   ++ + + +++++N       L    +++  M + G   ++ +YNI++ 
Sbjct: 449 AMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIA 508

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
               A N     ++Y   K ++  G  + D  TYS +++V         A  V  +M   
Sbjct: 509 LQAKARNYENVVKLY---KDMQVAG-FRPDKITYSIVMEVLGHCGHLDEAEAVFIEM-RR 563

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
              P+   +  L++    AG V++A+  ++ MLQ G +PN   CN LL A ++  +F  A
Sbjct: 564 DWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDA 623

Query: 453 F 453
           +
Sbjct: 624 Y 624


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 108/269 (40%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+ + + G  A +  +NIL+   C  G+  +AQ ++  +     K  L+  V 
Sbjct: 106 FKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAI----TKWGLRPSVV 161

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +++T++  +          ++K  M ++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 162 SFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEM 221

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    ++ + D A  ++                            
Sbjct: 222 LDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIY---------------------------- 253

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  +   L++EM   
Sbjct: 254 --KQMLSQ-----------------SLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMK 294

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ I++T LID C   G++E A + R
Sbjct: 295 GLKPDKITYTTLIDGCCKEGDLETAFEHR 323



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 149/367 (40%), Gaps = 32/367 (8%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DI +F   +  + +   L  A+  Y  +++H        CR +++       +     
Sbjct: 52  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHMMKLKYFKLVWG 111

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YE++       ++Y FN LM+      D++    V+  + K G+   + S+N L+    
Sbjct: 112 FYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYI 171

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 172 RLGD---LDEGFRLKSAMHASGV-QPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLV 227

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++LI+    +G V+ AM ++++ML     P+    N L+    +     +A  L
Sbjct: 228 PNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDL 287

Query: 456 FRSWT---LSKTQVALGEDYDG---NTDRISNMEHKDKQSITN-----------TPNFVP 498
               +   L   ++      DG     D  +  EH+ +    N                 
Sbjct: 288 IDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQ 347

Query: 499 NSHYSSFDKRF------SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHIS 550
              Y   +K          KP T TY +++   C   D +    L+ EM+  G  P+ ++
Sbjct: 348 EGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 407

Query: 551 WTILIDA 557
           + +L++ 
Sbjct: 408 YNVLMNG 414



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/312 (20%), Positives = 127/312 (40%), Gaps = 18/312 (5%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           C  P +   F   +  F K+ D+  A   ++A  K    P++    T+++     GD  +
Sbjct: 119 CGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDE 178

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
              +   + +  V  ++Y ++ L+N    + K     E++  M   G++ +  ++  L+ 
Sbjct: 179 GFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLID 238

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C +G   LA EIY ++        L  D+ TY+T++         + A  + ++M   
Sbjct: 239 GHCKSGRVDLAMEIYKQM----LSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMK 294

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G+ P+ IT+++LI+ C   G +E A    + M+Q     +      L+    +  ++  A
Sbjct: 295 GLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDA 354

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
            ++ R        ++ G   D  T  +   E   K  +      +         +R    
Sbjct: 355 EKVLRE------MLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEM------QRDGHV 402

Query: 513 PTTTTYNILMKA 524
           P+  TYN+LM  
Sbjct: 403 PSVVTYNVLMNG 414


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 20/291 (6%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLG-VMADMASYNIL 330
           K+ AI+  ++++        +NS++ +  H+ ++    E+Y  M   G    D  +Y+ L
Sbjct: 177 KAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSAL 236

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           + A C  G    A ++  E+K    +   K+    Y+ ++ +F        AL + E+M 
Sbjct: 237 ISAFCKLGRRDSATQLLNEMKENGMQPTTKI----YTMLITLFFKLDDVHGALSLFEEMR 292

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
                P+  T++ LI     AG +++A H F EM + GC P++   N ++    +A + D
Sbjct: 293 HQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLD 352

Query: 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
            A +LF+      T   +      NT   +  E K + S    P++          K   
Sbjct: 353 DAMKLFQEMG---TLRCIPSVVTYNTIIKALFESKSRAS--EVPSWFERM------KESG 401

Query: 511 FKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACG 559
             P++ TY+IL+   C      KA+M   EM   G  P   ++  LIDA G
Sbjct: 402 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 452



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 90/192 (46%), Gaps = 6/192 (3%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P     +C+ +   GK +    A   +   K++  S +  +   +I   G  G    +  
Sbjct: 438 PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAIN 497

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++++       ++Y +N+LM+  A    L   L   + MQ+ G + D+ SYNI+L    
Sbjct: 498 MFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLA 557

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    A E+   +K    +  ++ DV +Y+T++   + A  ++ A K+ E+M + G  
Sbjct: 558 KTGGPHRAMEMLSNMK----QSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFE 613

Query: 396 PNTITWSSLINA 407
            + IT+SS++ A
Sbjct: 614 YDLITYSSILEA 625



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 148/362 (40%), Gaps = 50/362 (13%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           FC   R     RD  SA +  +  K++   P   I   +I +     D   + +++E++R
Sbjct: 240 FCKLGR-----RD--SATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMR 292

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            Q    +++ +  L+     A  +      +  MQ+ G   D    N ++     AG   
Sbjct: 293 HQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLD 352

Query: 342 LAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAK--------WWQMALKVKEDMLS 391
            A +++ E+      G L+    V TY+TI+K   ++K        W+       E M  
Sbjct: 353 DAMKLFQEM------GTLRCIPSVVTYNTIIKALFESKSRASEVPSWF-------ERMKE 399

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           +G++P++ T+S LI+       +E+AM L EEM + G  P       L+ A  +A ++D 
Sbjct: 400 SGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 459

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK--RF 509
           A  LF+          L E+   ++ R+  +  K         + +     + FD+  + 
Sbjct: 460 ACELFQE---------LKENCGSSSARVYAVMIKHLGKAGRLDDAI-----NMFDEMNKL 505

Query: 510 SFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              P    YN LM          +AL  M  M+  G  P+  S+ I+++    +G    A
Sbjct: 506 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRA 565

Query: 568 LQ 569
           ++
Sbjct: 566 ME 567



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 84/172 (48%), Gaps = 6/172 (3%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           ++ID  G    Y  +  ++++L+    + +  V+  ++     A  L   + ++  M KL
Sbjct: 446 SLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKL 505

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D+ +YN L+      G   +  E    ++ ++  G +  D+ +Y+ I+   A    
Sbjct: 506 GCAPDVYAYNALMSGLARTG---MLDEALSTMRRMQEHGCIP-DINSYNIILNGLAKTGG 561

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
              A+++  +M  + V P+ +++++++ A ++AG+ E+A  L EEM   G E
Sbjct: 562 PHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFE 613



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 138/347 (39%), Gaps = 64/347 (18%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA---- 277
           ++  N +   GK   L  A++ +         P++    TII          KSRA    
Sbjct: 336 VVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFES----KSRASEVP 391

Query: 278 -IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
             +E ++   ++ + + ++ L++     + ++  + + + M + G     A+Y  L+ A 
Sbjct: 392 SWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDAL 451

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
             A    LA E++ E+K  E  G     V  Y+ ++K    A     A+ + ++M   G 
Sbjct: 452 GKAKRYDLACELFQELK--ENCGSSSARV--YAVMIKHLGKAGRLDDAINMFDEMNKLGC 507

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+   +++L++  A  G++++A+     M + GC P+    NI+L    +     RA  
Sbjct: 508 APDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAME 567

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           +                       +SNM    KQS                    + +P 
Sbjct: 568 M-----------------------LSNM----KQS--------------------TVRPD 580

Query: 515 TTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACG 559
             +YN ++ A      +     LM EM T+G   + I+++ +++A G
Sbjct: 581 VVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIG 627


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 146/355 (41%), Gaps = 60/355 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + F   +    ++  +V A+   D   +    P      TI+D  G+C  GD + +  + 
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD--GMCKKGDTVSALNLL 242

Query: 280 EDLRS-QNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCL 336
             +    ++  N+ +++++++    D + +    ++  MQ+ G+  D+ +YN ++   C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           +G    A+++  E+  LE K  +  DV TY+ ++  F     +  A ++ ++ML  G+ P
Sbjct: 303 SGRWSDAEQLLQEM--LERK--ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP 358

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           NTIT+SS+I+       ++ A H+F  M   GC PN    N L+     A + D    L 
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
                  T+  L  D                                           TT
Sbjct: 419 HEM----TETGLVAD-------------------------------------------TT 431

Query: 517 TYNILMKA--CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           TYN L+       D      L+ EM + GL P+ ++   L+D    +G ++ AL+
Sbjct: 432 TYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 148/356 (41%), Gaps = 48/356 (13%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           P+++   ++I   G C  G +  +  + +++  + ++ ++  +N+L+N    + KF    
Sbjct: 288 PDLFTYNSMI--VGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+Y  M   G++ +  +Y+ ++   C       A+ ++    +L A      ++ T++T+
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF----YLMATKGCSPNLITFNTL 401

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +  AK     +++  +M   G+  +T T+++LI+     G +  A+ L +EM+ +G 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN-------- 481
            P+   C+ LL    +  +   A  +F+    SK  +     ++G    +          
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 482 ------MEHKDKQSITNTPNFVPNS-HYSS-----------------FDKRFS--FKPTT 515
                 +E ++          VP++  YSS                 FD   S  F P  
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 516 TTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            T+  L+   C    RV     L  EM   G+  N I++  LI      GN+ GAL
Sbjct: 582 VTFTTLINGYCK-AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 110/277 (39%), Gaps = 30/277 (10%)

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             + +Y+ M++  +  D+ S+NIL+K  C       A   +G++  L     L  DV T+
Sbjct: 97  LVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLG----LHPDVVTF 152

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++           AL     M      PN +T+++L+N     G + +A+ L + M++
Sbjct: 153 TTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMME 212

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI-SNMEHK 485
            G +P       ++    +      A  L R        +     Y    D +  +  H 
Sbjct: 213 DGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHS 272

Query: 486 DKQSITNT-------PN-FVPNSHYSSF--DKRFS-------------FKPTTTTYNILM 522
           D Q++          P+ F  NS    F    R+S               P   TYN L+
Sbjct: 273 DAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332

Query: 523 KACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
            A   +  ++  + L +EM   G+ PN I+++ +ID 
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 22/256 (8%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----- 270
           I+P   I + + +  F K+  L +A   +        SPN+    T+ID  G CG     
Sbjct: 356 IIPNT-ITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID--GYCGAKRID 412

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           D M+   +  ++    +  +   +N+L++      DL   L++ + M   G+  D+ + +
Sbjct: 413 DGME---LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469

Query: 329 ILLKACCLAGNTVLAQEIYGEV----KHLEA----KGVLKLDVFTYSTIVKVFADAKWWQ 380
            LL   C  G    A E++  +    K L+A     GV + DV TY+ ++    +   + 
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV-EPDVQTYNILISGLINEGKFL 528

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A ++ E+M   G+ P+TIT+SS+I+       +++A  +F+ M      PN      L+
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588

Query: 441 QACVEACQFDRAFRLF 456
               +A + D    LF
Sbjct: 589 NGYCKAGRVDDGLELF 604


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 16/260 (6%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M +LG + ++ SYNILLK  C    +  A E+   +   +  G    DV +Y+T++
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMP--DDGGDCPPDVVSYTTVI 206

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F        A     +ML  G+ PN +T+SS+I A   A  +++AM +   M++ G  
Sbjct: 207 NGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVM 266

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN +  N ++     + Q   A    +               DG    +           
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKM-----------HSDGVEPDVVTYNSLMDYLC 315

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK--ALMNEMRTVGLSPNH 548
            N         + S  KR   KP  TTY  L++   T    V+   L++ M   G+ PNH
Sbjct: 316 KNGRCTEARKMFDSMTKR-GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 374

Query: 549 ISWTILIDACGGSGNVEGAL 568
             ++ILI A    G V+ A+
Sbjct: 375 YVFSILICAYAKQGKVDQAM 394



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 132/304 (43%), Gaps = 30/304 (9%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD  K+   Y ++  + +  N+  ++S++     A  +   +EV  +M K GVM +  +Y
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N ++   C +G     +E  G +K + + GV + DV TY++++           A K+ +
Sbjct: 273 NSIVHGYCSSGQ---PKEAIGFLKKMHSDGV-EPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            M   G+ P   T+ +L+   A  G + +   L + M++ G  PN    +IL+ A  +  
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 448 QFDRAFRLF---RSWTLSKTQVALGEDYD--GNTDRISNMEHKDKQSITNTPNFVPNSHY 502
           + D+A  +F   R   L+   V  G        + R+ +     +Q I            
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI------------ 436

Query: 503 SSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560
              D+R S  P    YN L+ + C    + + K L+ EM   G+  + I +  +ID+   
Sbjct: 437 ---DERLS--PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 561 SGNV 564
            G V
Sbjct: 492 EGRV 495



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 116/253 (45%), Gaps = 18/253 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           IL C + ++ GK   +  A+  +   ++   +P+     T+I +    G    +   +E 
Sbjct: 379 ILICAYAKQ-GK---VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQ 434

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF------TLEVYKNMQKLGVMADMASYNILLKACC 335
           +  + ++    V+NSL+    H L          E+   M   G+  D   +N ++ + C
Sbjct: 435 MIDERLSPGNIVYNSLI----HSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G  + +++++     L  +  +K D+ TYST++  +  A     A K+   M+S G+ 
Sbjct: 491 KEGRVIESEKLF----DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +T+++LIN       +E A+ LF EM  +G  P+    NI+LQ   +  +   A  L
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606

Query: 456 FRSWTLSKTQVAL 468
           +   T S TQ+ L
Sbjct: 607 YVGITESGTQLEL 619



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 152/378 (40%), Gaps = 31/378 (8%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P   + +   +  F K+ DL  A   Y         PN+    +II          K+  
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +   +    V  N   +NS+++   ++   K  +   K M   GV  D+ +YN L+   C
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    A++++  +     K  LK ++ TY T+++ +A          + + M+  G+ 
Sbjct: 316 KNGRCTEARKMFDSM----TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 371

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN   +S LI A A  G V+QAM +F +M Q G  P++     ++    ++ + + A R 
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 456 FRSWT---LSKTQVA---------LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
           F       LS   +          + + +D   + I  M  +     T   N + +SH  
Sbjct: 432 FEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 504 S---------FD--KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHIS 550
                     FD   R   KP   TY+ L+   C      +A  L+  M +VG+ P+ ++
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVT 551

Query: 551 WTILIDACGGSGNVEGAL 568
           +  LI+       +E AL
Sbjct: 552 YNTLINGYCKISRMEDAL 569



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 110/229 (48%), Gaps = 6/229 (2%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A+R ++       SP   +  ++I    I   + K++ +  ++  + + L+   FNS+++
Sbjct: 428 AMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID 487

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
            +  + +   + +++  M ++GV  D+ +Y+ L+   CLAG    A ++   +  +    
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG--- 544

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            +K D  TY+T++  +      + AL +  +M S+GV+P+ IT++ ++           A
Sbjct: 545 -MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAA 603

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
             L+  + ++G +      NI+L    +    D A R+F++  L+  Q+
Sbjct: 604 KELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/330 (20%), Positives = 147/330 (44%), Gaps = 23/330 (6%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           ++G++D  + V  K+ + G+ P  +  G+   +L   C+    SG VE  +   E + + 
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL---CK----SGRVEDAMRYFEQMIDE 438

Query: 185 RLPVKELDEEFRIVQLCV-NKPD------VNLAIRYACIVPRADILFCNFVREFGKKRDL 237
           RL    +     I  LC+ +K D      + +  R  C+     I F + +    K+  +
Sbjct: 439 RLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL---DTIFFNSIIDSHCKEGRV 495

Query: 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           + + + +D   +    P++    T+ID   + G   ++  +   + S  +  +   +N+L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 298 MN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           +N       ++  L +++ M+  GV  D+ +YNI+L+       T  A+E+Y  +     
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI----T 611

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +   +L++ TY+ I+           AL++ +++    +   T T++ +I A    G  +
Sbjct: 612 ESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRND 671

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
           +A  LF  +   G  P+ +  +++ +  +E
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIE 701


>gi|297599210|ref|NP_001046823.2| Os02g0468500 [Oryza sativa Japonica Group]
 gi|47497324|dbj|BAD19365.1| fertility restorer homologue A-like [Oryza sativa Japonica Group]
 gi|125582052|gb|EAZ22983.1| hypothetical protein OsJ_06677 [Oryza sativa Japonica Group]
 gi|255670892|dbj|BAF08737.2| Os02g0468500 [Oryza sativa Japonica Group]
          Length = 506

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 109/213 (51%), Gaps = 12/213 (5%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLNIY 292
           +L++ LR  D   K+L  PN  I   +I      GD   +  +++++R  N   V  ++ 
Sbjct: 174 ELLADLR--DPRSKYLPQPNTCIYNILIKHYVKKGDLGTAFQVFDEMRKMNCADVRPSLV 231

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNM-QKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
            +++L+        +K   E++++M +K  ++ D  +YN+L+   C  G    AQ I+G 
Sbjct: 232 TYSTLIGGLCRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGF 291

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           ++  E +     + F Y+T++         + A  V E+M+ +GV P+ ++++SL+    
Sbjct: 292 MRKNECEP----NAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLC 347

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
             G V++ ++L +EM Q GC+ +    N+LL+ 
Sbjct: 348 RHGNVDEGINLVQEMWQKGCKADVVTYNLLLEG 380



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 93/213 (43%), Gaps = 10/213 (4%)

Query: 248 KKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAH 303
           +K+   PN +   T+I+  G C  G+   +R ++E++    V  +   + SL+       
Sbjct: 293 RKNECEPNAFNYATLIN--GHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHG 350

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           ++   + + + M + G  AD+ +YN+LL+  C       A  +   ++ L ++GV +L+V
Sbjct: 351 NVDEGINLVQEMWQKGCKADVVTYNLLLEGLCKDRRIAEAVTL---LEKLPSEGV-QLNV 406

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            +Y  ++         + A  +   ML  G  P+    + L+    + G V  A      
Sbjct: 407 ASYRIVMNCLCSCGEMEKAAGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTLYG 466

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           ++  G  P ++C   L+++     +  R+  L 
Sbjct: 467 LVDTGFMPEARCWARLIESVFRERKLRRSIELL 499


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 133/318 (41%), Gaps = 59/318 (18%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           SP   +  T+I   G+C  G + K+  ++    ++   ++    N+L++    A  L+  
Sbjct: 459 SPGGGLLTTLIS--GLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEG 516

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
             + K +   G + D  SYN L+  CC  GN  L  E +  +  +  KG LK D +TYS 
Sbjct: 517 FRIQKEILGRGFVMDRVSYNTLISGCC--GNKKL-DEAFMFMDEMVKKG-LKPDNYTYSI 572

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +++   +    + A++   D    G+ P+  T+S +I+ C  A   E+   LF+EM+   
Sbjct: 573 LIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNN 632

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            +PN+   N L+ A      + R+ RL  +  L +                 +M+HK   
Sbjct: 633 LQPNTVVYNHLIGA------YCRSGRLSMALELRE-----------------DMKHK--- 666

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSP 546
                                   P + TY  L+K  +  +     K L+ EMR  GL P
Sbjct: 667 ---------------------GISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEP 705

Query: 547 NHISWTILIDACGGSGNV 564
           N   +T LID  G  G +
Sbjct: 706 NVFHYTALIDGYGKLGQM 723



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 117/251 (46%), Gaps = 27/251 (10%)

Query: 265 VCGICGDYMKSRA-------IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317
           + G CG+     A       + + L+  N T +I +   L+N+N   ++  ++ + + ++
Sbjct: 539 ISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILI-RGLLNMNK--VEEAIQFWGDCKR 595

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
            G++ D+ +Y++++  CC A  T   Q+++ E+        L+ +   Y+ ++  +  + 
Sbjct: 596 NGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEM----MSNNLQPNTVVYNHLIGAYCRSG 651

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
              MAL+++EDM   G++PN+ T++SLI   +    VE+A  L EEM   G EPN     
Sbjct: 652 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYT 711

Query: 438 ILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            L+    +  Q  +   L R           ++ T +  G   DGN    S + H+ ++ 
Sbjct: 712 ALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREK 771

Query: 490 ITNTPNFVPNS 500
                  VP+S
Sbjct: 772 -----GIVPDS 777



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 118/253 (46%), Gaps = 29/253 (11%)

Query: 189 KELDEEFRIVQLCVNK---PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245
           K+LDE F  +   V K   PD      Y   +    +L  N V E         A++ + 
Sbjct: 546 KKLDEAFMFMDEMVKKGLKPD-----NYTYSILIRGLLNMNKVEE---------AIQFWG 591

Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAH 303
             K++   P++Y    +ID C       + + +++++ S N+  N  V+N L+     + 
Sbjct: 592 DCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSG 651

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
            L   LE+ ++M+  G+  + A+Y  L+K   +      A+ +  E++ +E    L+ +V
Sbjct: 652 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMR-MEG---LEPNV 707

Query: 364 FTYSTIVKVFADAKWWQMALKVK---EDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
           F Y+ ++  +   K  QM +KV+    +M S  V PN IT++ +I   A  G V +A  L
Sbjct: 708 FHYTALIDGYG--KLGQM-VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRL 764

Query: 421 FEEMLQAGCEPNS 433
             EM + G  P+S
Sbjct: 765 LHEMREKGIVPDS 777



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 145/351 (41%), Gaps = 20/351 (5%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           LF   +  F K   +  A+  +   ++    PN+    T+ID  G+ G Y ++    E +
Sbjct: 254 LFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKM 313

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
             + V   +  ++ L+     A  +     V K M + G   ++  YN L+ +   AG+ 
Sbjct: 314 VERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGS- 372

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
            L + I  E+K L     L L   TY+T++K +  +    +A ++ ++MLS G   N  +
Sbjct: 373 -LNKAI--EIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGS 429

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++S+I    +  + + A+    EML     P       L+    +  +  +A  L+  + 
Sbjct: 430 FTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKF- 488

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
                  L + +  +T   + + H   ++      F              F     +YN 
Sbjct: 489 -------LNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILG----RGFVMDRVSYNT 537

Query: 521 LMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L+  CC +    +A   M+EM   GL P++ +++ILI        VE A+Q
Sbjct: 538 LISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQ 588



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 90/175 (51%), Gaps = 6/175 (3%)

Query: 285 QNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + V+ ++Y+F + +N       ++  +E++  M++ GV+ ++ +YN ++    ++G    
Sbjct: 246 KGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRY-- 303

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
             E +   + +  +GV +  + TYS +VK    AK    A  V ++M   G  PN I ++
Sbjct: 304 -DEAFMFKEKMVERGV-EPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYN 361

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           +LI++   AG + +A+ + + M+  G    S   N L++   ++ Q D A RL +
Sbjct: 362 NLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLK 416



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 19/251 (7%)

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             L+V+  +   G+     + NILL +   A       E +    H+  KGV   DV+ +
Sbjct: 201 LALDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAF----HVVCKGV-SPDVYLF 255

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T +  F      + A+++   M  AGV PN +T++++I+    +G  ++A    E+M++
Sbjct: 256 TTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVE 315

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G EP     +IL++   +A +   A+ + +  T         + +  N    +N+    
Sbjct: 316 RGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMT--------EKGFPPNVIVYNNL---- 363

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR--VKALMNEMRTVGL 544
             S+    +                  T++TYN L+K  C        + L+ EM ++G 
Sbjct: 364 IDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGF 423

Query: 545 SPNHISWTILI 555
           + N  S+T +I
Sbjct: 424 NVNQGSFTSVI 434



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 26/180 (14%)

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS-----------WTLSKTQ 465
           A+ +F  +   G  P+   CNILL + V A +F +    F             +T +   
Sbjct: 202 ALDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAFHVVCKGVSPDVYLFTTAINA 261

Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS--FDKRFSFK---------PT 514
              G   +   +  S ME         T N V +    S  +D+ F FK         PT
Sbjct: 262 FCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPT 321

Query: 515 TTTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
             TY+IL+K   T   R+     ++ EM   G  PN I +  LID+   +G++  A++ +
Sbjct: 322 LITYSILVKG-LTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIK 380


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 152/352 (43%), Gaps = 43/352 (12%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           +P++    +++D  G+C D    RA  +  +++ + V  + + F++L+    NA  +   
Sbjct: 78  APDVVTYTSVVD--GLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEA 135

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L++YK +       D  S + L+   C       A E++ E++  E  G  K DV TY+ 
Sbjct: 136 LKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMRE-DGAWKPDVVTYTA 194

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F  +   + A+K+   M      PN +T+SSL++    AG ++QA+ LF  M   G
Sbjct: 195 LIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKG 254

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS---KTQVALGEDYDGNTDRISNMEH- 484
           C PN      L+     A + D A  L    T +      V+     DG   R+  +E  
Sbjct: 255 CVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYC-RLGRIEEA 313

Query: 485 ----KDKQSITNTPNFVPNS-------HYSSFDK-RF---------SFKPTTTTYNILMK 523
               K+  + +  P+ +  +       + S  ++ RF            P   TY+I++ 
Sbjct: 314 KQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVA 373

Query: 524 ACCTDYYRVK------ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
                Y R K        + EM    ++PN ++++ LID    +G V  A++
Sbjct: 374 G----YSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAME 421



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/418 (20%), Positives = 160/418 (38%), Gaps = 105/418 (25%)

Query: 190 ELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249
           EL +E  + +    KPDV              + +   +  F K  +L  A++     + 
Sbjct: 172 ELFQEMEMREDGAWKPDV--------------VTYTALIDGFCKSGNLEKAMKMLGVMEG 217

Query: 250 HLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305
               PN+    +++   G+C  GD  ++  ++  + S+    N+  + +L++    AH +
Sbjct: 218 RKCVPNVVTYSSLLH--GLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKV 275

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE---------------- 349
                +   M      AD  SYN LL   C  G    A++++ E                
Sbjct: 276 DAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCL 335

Query: 350 ----------------VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
                           +++++    +  DV TYS +V  ++ AK +  A +  ++M++  
Sbjct: 336 VRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARN 395

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           V PN +T+SSLI+    AG V  AM    E+L+   +P+     I+++     C  DR  
Sbjct: 396 VAPNAVTYSSLIDGLCKAGRVNHAM----EVLKNVDKPDVVTYTIVIEG---LCGTDRT- 447

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
                                            ++++T     V        +KR   +P
Sbjct: 448 ---------------------------------EEALTLLEEMV--------NKR--VEP 464

Query: 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +  T+N ++ A C   D      L+  M   GL P  +++T L++    +G +E A +
Sbjct: 465 SVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYE 522



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 114/275 (41%), Gaps = 40/275 (14%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +YN+++   C A  T  A E+  E++  + K V   D+ TYST++  F        A ++
Sbjct: 11  TYNVVVNGLCKARLTSKAYEVLKEMR--DGKSVAP-DLVTYSTVINGFCKQGEMDRACEI 67

Query: 386 KEDMLSA-GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
             +M++  G+ P+ +T++S+++     G +++A  +  EM   G EP+    + L+    
Sbjct: 68  LREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWC 127

Query: 445 EACQFDRAFRLFRSWTLSKTQV----------------ALGEDYDGNTDRISNMEHKDKQ 488
            A + D A +L++    S  ++                 +GE Y    +    ME ++  
Sbjct: 128 NARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAY----ELFQEMEMREDG 183

Query: 489 S-----ITNTP---NFVPNSHYSSFDKRFSFK------PTTTTYNILMKACCT--DYYRV 532
           +     +T T     F  + +     K           P   TY+ L+   C   D  + 
Sbjct: 184 AWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQA 243

Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             L   M + G  PN +++T LI     +  V+ A
Sbjct: 244 LDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAA 278



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 32/196 (16%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E  + M    V  +  +Y+ L+   C AG    A E+         K V K DV TY+ +
Sbjct: 386 EFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVL--------KNVDKPDVVTYTIV 437

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           ++        + AL + E+M++  V P+  T++S+I A    G +++A  L   M   G 
Sbjct: 438 IEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGL 497

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           EP       LL+      + + A+ LF                         M  K K+S
Sbjct: 498 EPGMVTYTTLLEGFSRTGRMEIAYELFEV-----------------------MRRKAKKS 534

Query: 490 ITNTPNFVPNSHYSSF 505
            ++  N VP   +S+ 
Sbjct: 535 -SSAANLVPEQAFSAL 549



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 19/216 (8%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310
           +PN     ++ID  G+C  G    +  + +++   +V     V   L   +  +   TL 
Sbjct: 397 APNAVTYSSLID--GLCKAGRVNHAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTL- 453

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
             + M    V   + ++N ++ A C  G+     E +  +  + A G L+  + TY+T++
Sbjct: 454 -LEEMVNKRVEPSVGTFNSVIGALCRLGDM---DEAWKLLVAMAAHG-LEPGMVTYTTLL 508

Query: 371 KVFADAKWWQMAL--------KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           + F+     ++A         K K+   +A + P    +S+LI     A  +++AM + E
Sbjct: 509 EGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQ-AFSALIRGLCKAREIDKAMAVVE 567

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           E+    CEP  + C  ++   + A + + A +L  S
Sbjct: 568 ELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINS 603


>gi|302799860|ref|XP_002981688.1| hypothetical protein SELMODRAFT_115229 [Selaginella moellendorffii]
 gi|300150520|gb|EFJ17170.1| hypothetical protein SELMODRAFT_115229 [Selaginella moellendorffii]
          Length = 289

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 11/169 (6%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           ++ D++ Q++  N   +N LM+  V A H+L   + V+K M   GV A +ASYNIL+ AC
Sbjct: 68  LFRDMK-QSIRPNHLSYNILMHSYVKAGHELTKVVSVFKEMYLRGVKASVASYNILIAAC 126

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF---ADAKWWQMALKVKEDMLS 391
                   A+  +  +K    K  L+ +V TYS+++ V+    D      AL V  +M+ 
Sbjct: 127 ATGKQAWEARVFFSNMK----KQDLEPNVITYSSLINVYVASGDVGNCAAALDVLREMVK 182

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           A V PN  T+S L++     G +E+AM +F+ M   G EP++   NIL+
Sbjct: 183 AEVMPNVTTFSCLLHGYGQEGKIEEAMKIFQTMKDLGIEPSAITFNILM 231



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 100/207 (48%), Gaps = 9/207 (4%)

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKN 314
           Y+   IIDV G    +  +  ++      +V  +  ++N+L++    A  L+   +++++
Sbjct: 12  YLRIHIIDVLGKASSFDIAVQVFNHFIKISVKKDAGMYNALLHAFCKAGKLEAVDDLFRD 71

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M++  +  +  SYNIL+ +   AG+ +   ++    K +  +GV K  V +Y+ ++   A
Sbjct: 72  MKQ-SIRPNHLSYNILMHSYVKAGHEL--TKVVSVFKEMYLRGV-KASVASYNILIAACA 127

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLIN---ACANAGLVEQAMHLFEEMLQAGCEP 431
             K    A     +M    + PN IT+SSLIN   A  + G    A+ +  EM++A   P
Sbjct: 128 TGKQAWEARVFFSNMKKQDLEPNVITYSSLINVYVASGDVGNCAAALDVLREMVKAEVMP 187

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRS 458
           N    + LL    +  + + A ++F++
Sbjct: 188 NVTTFSCLLHGYGQEGKIEEAMKIFQT 214


>gi|298715105|emb|CBJ27793.1| pentatricopeptide repeat-containing protein, putative [Ectocarpus
           siliculosus]
          Length = 614

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 141/325 (43%), Gaps = 22/325 (6%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSL 297
           AL  +D  +K    P+     +II       +    RAI   + ++   +  + Y  NS+
Sbjct: 190 ALGYFDDMRKAGVEPDEMTFASIIATIRDGSEGSPERAIEAVQMMKEAGLRPDTYCMNSV 249

Query: 298 M--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           M  NV A      L++++ M++  +  D+ SYN  + AC    +   A  +  + +  + 
Sbjct: 250 MAVNVQARQPNAALKIFEEMKRDDIPRDVVSYNTAISACDKLQDAETAVRLLRQAREDD- 308

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
              ++ DVF+Y+T +     +  WQ A ++ E+M  AGV P+ +T+++LI+ C  A    
Sbjct: 309 ---VEPDVFSYNTAISALGHSCQWQEAARIFEEMNEAGVAPSLMTYNTLISGCVRAQAPS 365

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
           +A+ +F  M + G + +       L A V    ++ A  L     +     A  + Y   
Sbjct: 366 EALSVFYLMKERGIKRDQYSFAGALHASVHLRDYELAMNLLEEM-IDMGMPANSQSY-AT 423

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVK 533
             R      K  +++     F+  S       R S  PT  TY  L++A   C D  R  
Sbjct: 424 AIRTCARCSKSDEAV-----FLYASQL-----RMSIVPTEMTYKALVEAFTDCKDARRAA 473

Query: 534 ALMNEMRTVGLSPNHISWTILIDAC 558
            +++EMR + +   H+    ++ AC
Sbjct: 474 WVLDEMREMLVPIEHVHLMDVLYAC 498



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 6/114 (5%)

Query: 349 EVKHLEAKGV----LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           E  H+ A+ +    L+  +F Y+ ++   A  + ++ AL   +DM  AGV P+ +T++S+
Sbjct: 153 EQHHIAAETMRTEGLQKSLFAYNALISGCASGRGYERALGYFDDMRKAGVEPDEMTFASI 212

Query: 405 INACANA--GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           I    +   G  E+A+   + M +AG  P++ C N ++   V+A Q + A ++F
Sbjct: 213 IATIRDGSEGSPERAIEAVQMMKEAGLRPDTYCMNSVMAVNVQARQPNAALKIF 266



 Score = 45.1 bits (105), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 47/243 (19%), Positives = 102/243 (41%), Gaps = 8/243 (3%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           +PR  + +   +    K +D  +A+R    +++    P+++   T I   G    + ++ 
Sbjct: 274 IPRDVVSYNTAISACDKLQDAETAVRLLRQAREDDVEPDVFSYNTAISALGHSCQWQEAA 333

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            I+E++    V  ++  +N+L++  V A      L V+  M++ G+  D  S+   L A 
Sbjct: 334 RIFEEMNEAGVAPSLMTYNTLISGCVRAQAPSEALSVFYLMKERGIKRDQYSFAGALHAS 393

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
               +  LA  +  E+  +     +  +  +Y+T ++  A       A+ +    L   +
Sbjct: 394 VHLRDYELAMNLLEEMIDMG----MPANSQSYATAIRTCARCSKSDEAVFLYASQLRMSI 449

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P  +T+ +L+ A  +     +A  + +EM +            +L AC + C  D A  
Sbjct: 450 VPTEMTYKALVEAFTDCKDARRAAWVLDEMREMLVPIEHVHLMDVLYACTDQC--DIALE 507

Query: 455 LFR 457
           + R
Sbjct: 508 VLR 510


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 117/293 (39%), Gaps = 54/293 (18%)

Query: 281  DLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            D+R+Q + L   V N ++ V A    +++   V+  M   GV  D  +Y  ++   C  G
Sbjct: 786  DMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNG 845

Query: 339  NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
            N + A     E+     +G + +D  T + I+  F +      A+     +   G++PN 
Sbjct: 846  NVLEADRWICEMME---RGFV-VDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNL 901

Query: 399  ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            I +SS+I+     G V+QA  L EEM++ G +PN      L+    +    +RAFRLF  
Sbjct: 902  INYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFL- 960

Query: 459  WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
                                           +  + N+ PN H               TY
Sbjct: 961  ------------------------------KLIRSDNYKPNVH---------------TY 975

Query: 519  NILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              ++   C +    R + L   M+  GL PN  ++T LID    +GN   A +
Sbjct: 976  TAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYE 1028



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 131/301 (43%), Gaps = 23/301 (7%)

Query: 265  VCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV 320
            +   C   + +RA+  +  +    ++ N+  ++S+++       +K   E+ + M K G 
Sbjct: 873  ITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGW 932

Query: 321  MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
              ++ ++  L+   C  G T  A  ++  +K + +    K +V TY+ ++  +   +   
Sbjct: 933  KPNVYTHTSLIHGLCKKGWTERAFRLF--LKLIRSDN-YKPNVHTYTAMISGYCKEEKLS 989

Query: 381  MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
             A  + E M   G+ PNT T+++LI+    AG   +A  L E M   G  PN+   N ++
Sbjct: 990  RAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIV 1049

Query: 441  QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
                +  + + AF+L  +   ++ +       DG T  I   E   +  +     F+ N 
Sbjct: 1050 DGLCKRGRAEEAFKLLNTGFQNQIEA------DGVTYTILISEQCKRADMNQALVFL-NK 1102

Query: 501  HYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDAC 558
             +     +  F+P    Y  L+ A C        + L +E+  +GL+P   ++T +I  C
Sbjct: 1103 MF-----KVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMI--C 1155

Query: 559  G 559
            G
Sbjct: 1156 G 1156



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 96/238 (40%), Gaps = 37/238 (15%)

Query: 254  PNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
            PN++    +I   G C +   SRA  ++E ++ Q +  N   + +L++    A +     
Sbjct: 970  PNVHTYTAMIS--GYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAY 1027

Query: 310  EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY--GEVKHLEAKGV--------- 358
            E+ + M   G   +  +YN ++   C  G    A ++   G    +EA GV         
Sbjct: 1028 ELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQ 1087

Query: 359  --------------------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
                                 + D+  Y+T++  F      + + K+ ++++  G+ P  
Sbjct: 1088 CKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTK 1147

Query: 399  ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             T++S+I        V  A+  F++M   GC P+S     L+    +  + D A +L+
Sbjct: 1148 ETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLY 1205


>gi|428179291|gb|EKX48163.1| hypothetical protein GUITHDRAFT_86178 [Guillardia theta CCMP2712]
          Length = 557

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 106/235 (45%), Gaps = 10/235 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   ++ +G+   L +A    +   K   +P++ +   ++  C   G+   ++ ++  LR
Sbjct: 36  YGTLIKAYGQLGQLEAAFETLNGMVKGGPAPSIRVINALLQACVRAGNLTAAQTLFSSLR 95

Query: 284 SQNVTLNIY----VFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLA 337
              + +++      FN ++N  A   K     ++   M++ G   D  +Y  L+KAC  A
Sbjct: 96  GAGLCISLQPTGVSFNIMVNAYARRRKVEKAFKMLLEMRRAGCKPDQITYTTLVKACVAA 155

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A+ + GE++ L     +  + ++Y+ I+   A    W  A ++ + M   GV  N
Sbjct: 156 GQFDRAERLLGEMEELG----IPPNAYSYNCILYGLAQKLQWGKATRLLQRMEEDGVEAN 211

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            +++S  I AC  A  +++A  LFEEM + G  PN    N ++         D A
Sbjct: 212 LLSYSYCILACVRARRMKEASALFEEMRRKGIVPNLFVMNTMMSGYAAKGMVDEA 266



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 2/170 (1%)

Query: 290 NIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +++ + +L+        L+   E    M K G    +   N LL+AC  AGN   AQ ++
Sbjct: 32  SVHCYGTLIKAYGQLGQLEAAFETLNGMVKGGPAPSIRVINALLQACVRAGNLTAAQTLF 91

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             ++       L+    +++ +V  +A  +  + A K+  +M  AG  P+ IT+++L+ A
Sbjct: 92  SSLRGAGLCISLQPTGVSFNIMVNAYARRRKVEKAFKMLLEMRRAGCKPDQITYTTLVKA 151

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           C  AG  ++A  L  EM + G  PN+   N +L    +  Q+ +A RL +
Sbjct: 152 CVAAGQFDRAERLLGEMEELGIPPNAYSYNCILYGLAQKLQWGKATRLLQ 201



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/303 (19%), Positives = 132/303 (43%), Gaps = 43/303 (14%)

Query: 197 IVQLCVNKPDVNLA------IRYA--CI-VPRADILFCNFVREFGKKRDLVSALRAYDAS 247
           ++Q CV   ++  A      +R A  CI +    + F   V  + ++R +  A +     
Sbjct: 74  LLQACVRAGNLTAAQTLFSSLRGAGLCISLQPTGVSFNIMVNAYARRRKVEKAFKMLLEM 133

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307
           ++    P+     T++  C   G + ++  +  ++    +  N Y +N ++   A  L++
Sbjct: 134 RRAGCKPDQITYTTLVKACVAAGQFDRAERLLGEMEELGIPPNAYSYNCILYGLAQKLQW 193

Query: 308 --TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL------------ 353
                + + M++ GV A++ SY+  + AC  A     A  ++ E++              
Sbjct: 194 GKATRLLQRMEEDGVEANLLSYSYCILACVRARRMKEASALFEEMRRKGIVPNLFVMNTM 253

Query: 354 -----------EAKGVLKL--------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
                      EA+G++KL        +  T+S++++ F +A +   A++VK  M   GV
Sbjct: 254 MSGYAAKGMVDEAQGIMKLLQDMRIKANAMTFSSLIEAFINAGYADKAVEVKRKMEELGV 313

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAF 453
             + +  + ++ A  + G VE+A+   EE+++    P +S+  + +L  C +    + A 
Sbjct: 314 EVDMVVSTQMLKAYTSMGKVEEAIEKLEEIVKEASSPVSSRTFDSVLFQCSKRGSKEEAL 373

Query: 454 RLF 456
           R+ 
Sbjct: 374 RVL 376


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 148/361 (40%), Gaps = 72/361 (19%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + F   +    ++  +V A+   D   +    PN     TI+D  G+C  GD + +  + 
Sbjct: 179 VTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD--GMCKIGDTVSALNLL 236

Query: 280 EDLRS-QNVTLNIYVFNSLMN--------VNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
             +    ++  N+ +++++++         +AH+L      Y  MQ+ G+  D+ +YN +
Sbjct: 237 RKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNL------YTEMQEKGIFPDLFTYNCM 290

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +   C +G    AQ +  E+  LE K  +  +V TYS ++  +   + +  A ++ ++ML
Sbjct: 291 IDGFCSSGRWSEAQRLLQEM--LERK--INPNVVTYSALINAYVKERKFFEAEELYDEML 346

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
             G+ PNTIT++S+I+       ++ A H+F  M   GC P+    N L+     A + D
Sbjct: 347 PRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRID 406

Query: 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
               L        T+  L  D                                       
Sbjct: 407 DGTELLHEM----TETGLVAD--------------------------------------- 423

Query: 511 FKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
               TTTYN L+   C   D      L  +M + G+ P+ ++   L+D    +G ++ AL
Sbjct: 424 ----TTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDAL 479

Query: 569 Q 569
           +
Sbjct: 480 E 480



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 130/312 (41%), Gaps = 44/312 (14%)

Query: 267 GICGDYMKSRAIYEDLRSQNVTLNIYV-------------FNSLMNV--NAHDLKFTLEV 311
           G  G+ +K R+ + +++     ++++              FN LM V          + +
Sbjct: 40  GFRGESLKLRSGFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISL 99

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y+ M++  +  D+ S+NIL+K  C       A   +G++  L      + DV T+ST++ 
Sbjct: 100 YQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLG----FQPDVVTFSTLLH 155

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                     AL    D+      PN +T+++L+N     G V +A+ L + M++ G +P
Sbjct: 156 GLCVEDRVSEAL----DLFHQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQP 211

Query: 432 NSQCCNILLQACVEACQFDRAFRLFR---SWTLSKTQVALGEDYDGNTDRI-SNMEHKDK 487
           N      ++    +      A  L R     +  K  V +   Y    D +  +  H D 
Sbjct: 212 NQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVI---YSAIIDGLWKDGRHSDA 268

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLS 545
            ++           Y+   ++  F P   TYN ++   C+   +   + L+ EM    ++
Sbjct: 269 HNL-----------YTEMQEKGIF-PDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKIN 316

Query: 546 PNHISWTILIDA 557
           PN ++++ LI+A
Sbjct: 317 PNVVTYSALINA 328



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 16/253 (6%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM-- 273
           I+P   I + + +  F K+  L +A   +        SP+++   T+ID  G CG     
Sbjct: 350 IIPNT-ITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLID--GYCGAKRID 406

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
               +  ++    +  +   +N+L++      DL   L++ + M   GV  D+ + N LL
Sbjct: 407 DGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLL 466

Query: 332 KACCLAGNTVLAQEIYGEVKH----LEA----KGVLKLDVFTYSTIVKVFADAKWWQMAL 383
              C  G    A E++  ++     L+A     GV + DV TY+ ++    +   +  A 
Sbjct: 467 DGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGV-EPDVQTYNILISGLINEGKFLEAE 525

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           ++ ++M   G+ PNTIT+SS+IN       +++A  +F+ M      P+    N L+   
Sbjct: 526 ELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGY 585

Query: 444 VEACQFDRAFRLF 456
            +A + D    LF
Sbjct: 586 CKAGRVDDGLELF 598



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 107/238 (44%), Gaps = 24/238 (10%)

Query: 243 AYDASKKHLSS---PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN------- 290
           A D S++ +SS   P++  C T++D  G+C  G    +  +++ ++   + L+       
Sbjct: 443 ALDLSQQMISSGVCPDIVTCNTLLD--GLCDNGKLKDALEMFKAMQKSKMDLDASRPFNG 500

Query: 291 ----IYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
               +  +N L++   ++ KF    E+YK M   G++ +  +Y+ ++   C       A 
Sbjct: 501 VEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEAT 560

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           +++  +           DV T++T+V  +  A      L++  +M   G+  + IT+ +L
Sbjct: 561 QMFDSM----GSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITL 616

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           I+     G +  A+ +F+EM+ +G  P++     +L       +  RA  +     +S
Sbjct: 617 IHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQMS 674


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 32/281 (11%)

Query: 287 VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           VT N+Y  N L+N     + + F + +   M KLG+    +++N L+   C  G    A 
Sbjct: 119 VTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAV 178

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           E++ E+     +   + +V +Y+TI+          MA+ V + M   G  P+ +T++++
Sbjct: 179 ELFNEM----VRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTI 234

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
           I++     LV  AM    EML  G  PN    N ++       Q + A RLF+       
Sbjct: 235 IDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEM----- 289

Query: 465 QVALGEDYDGNTDRISNM-EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
              +G D   +T  ++ + +   K+ + +    V    + +  ++   +P  +TYN LM 
Sbjct: 290 ---VGRDVMPDTVTLTILVDGLCKEGMVSEARLV----FETMTEK-GVEPNISTYNALM- 340

Query: 524 ACCTDYYRVKALMNEMRTV-------GLSPNHISWTILIDA 557
               D Y ++ LMNE + V       G +P   S+ ILI+ 
Sbjct: 341 ----DGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILING 377



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 133/336 (39%), Gaps = 66/336 (19%)

Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           FN+L+N   N   +K  +E++  M + G   ++ SYN ++   C  GNT +A +++   K
Sbjct: 161 FNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVF---K 217

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-------------- 397
            +E  G  K DV TY+TI+      +    A++   +ML  G+ PN              
Sbjct: 218 KMEQNGC-KPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCIL 276

Query: 398 ---------------------TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                                T+T + L++     G+V +A  +FE M + G EPN    
Sbjct: 277 GQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTY 336

Query: 437 NILLQACVEACQFDRAFRLF------------RSWTLSKTQVALGEDYDGNTDRISNMEH 484
           N L+         + A ++F             S+ +           D     ++ M H
Sbjct: 337 NALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYH 396

Query: 485 KDKQSITNTPNFV---------PNSHYSSFDKRFSFK--PTTTTYNILMKACCTDYYRVK 533
           K     T T + +         P    + F +  S+   P   TY+IL+   C   +  +
Sbjct: 397 KALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDE 456

Query: 534 AL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           AL  +  M+   L PN +  TILI+    +G +E A
Sbjct: 457 ALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVA 492



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 111/252 (44%), Gaps = 24/252 (9%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG-EVKHLEAKGVLKLDVFTYSTI 369
           V++ M + GV  ++++YN L+   CL      A++++   ++   A GV      +Y+ +
Sbjct: 320 VFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGV-----HSYNIL 374

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  F  ++    A  +  +M    + P+T+T+S+L+      G  ++A+++F+EM   G 
Sbjct: 375 INGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGL 434

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            PN    +ILL    +    D A +L +S    K    L  +   +T  I  M    K  
Sbjct: 435 LPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKK----LEPNIVHHTILIEGMFIAGKLE 490

Query: 490 ITNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
           +              F K F+   +PT  TY +++K    +    +A  L  +M   G  
Sbjct: 491 VAK----------ELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFL 540

Query: 546 PNHISWTILIDA 557
           PN  S+ ++I  
Sbjct: 541 PNSCSYNVMIQG 552



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 76/150 (50%), Gaps = 4/150 (2%)

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           K  L ++K M   G++ ++ +Y+ILL   C  G+   A ++   +K ++ K  L+ ++  
Sbjct: 420 KEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKL---LKSMQEKK-LEPNIVH 475

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           ++ +++    A   ++A ++   + + G+ P   T++ +I      GL ++A  LF +M 
Sbjct: 476 HTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKME 535

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRL 455
             G  PNS   N+++Q  ++      A RL
Sbjct: 536 DDGFLPNSCSYNVMIQGFLQNQDSSTAIRL 565



 Score = 42.0 bits (97), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 74/205 (36%), Gaps = 30/205 (14%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V  +   +  FA  K +   + +   M   GVT N  + + LIN       V+ A+ +  
Sbjct: 88  VAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILG 147

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDG 474
           +M + G  P +   N L+       +   A  LF            +S   +  G    G
Sbjct: 148 KMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTG 207

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA 534
           NT    ++  K +Q+                      KP   TYN ++ + C D     A
Sbjct: 208 NTSMAVDVFKKMEQN--------------------GCKPDVVTYNTIIDSLCKDRLVNDA 247

Query: 535 L--MNEMRTVGLSPNHISWTILIDA 557
           +  ++EM   G+ PN  ++  ++  
Sbjct: 248 MEFLSEMLDRGIPPNVFTYNCMVHG 272


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 117/293 (39%), Gaps = 54/293 (18%)

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           D+R+Q + L   V N ++ V A    +++   V+  M   GV  D  +Y  ++   C  G
Sbjct: 199 DMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNG 258

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           N + A     E+     +G + +D  T + I+  F +      A+     +   G++PN 
Sbjct: 259 NVLEADRWICEMME---RGFV-VDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNL 314

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           I +SS+I+     G V+QA  L EEM++ G +PN      L+    +    +RAFRLF  
Sbjct: 315 INYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLF-- 372

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
                                          +  + N+ PN H               TY
Sbjct: 373 -----------------------------LKLIRSDNYKPNVH---------------TY 388

Query: 519 NILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             ++   C +    R + L   M+  GL PN  ++T LID    +GN   A +
Sbjct: 389 TAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYE 441



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 136/314 (43%), Gaps = 23/314 (7%)

Query: 265 VCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV 320
           +   C   + +RA+  +  +    ++ N+  ++S+++       +K   E+ + M K G 
Sbjct: 286 ITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGW 345

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             ++ ++  L+   C  G T  A  ++  +K + +    K +V TY+ ++  +   +   
Sbjct: 346 KPNVYTHTSLIHGLCKKGWTERAFRLF--LKLIRSDNY-KPNVHTYTAMISGYCKEEKLS 402

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A  + E M   G+ PNT T+++LI+    AG   +A  L E M   G  PN+   N ++
Sbjct: 403 RAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIV 462

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
               +  + + AF+L  +   ++ +       DG T  I   E   +  +     F+ N 
Sbjct: 463 DGLCKRGRAEEAFKLLNTGFQNQIEA------DGVTYTILISEQCKRADMNQALVFL-NK 515

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDAC 558
            +     +  F+P    Y  L+ A C        + L +E+  +GL+P   ++T +I  C
Sbjct: 516 MF-----KVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMI--C 568

Query: 559 GGSGNVEGALQCRF 572
           G     + +L  +F
Sbjct: 569 GYCREKKVSLAVKF 582



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 96/238 (40%), Gaps = 37/238 (15%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN++    +I   G C +   SRA  ++E ++ Q +  N   + +L++    A +     
Sbjct: 383 PNVHTYTAMIS--GYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAY 440

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY--GEVKHLEAKGV--------- 358
           E+ + M   G   +  +YN ++   C  G    A ++   G    +EA GV         
Sbjct: 441 ELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQ 500

Query: 359 --------------------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
                                + D+  Y+T++  F      + + K+ ++++  G+ P  
Sbjct: 501 CKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTK 560

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            T++S+I        V  A+  F++M   GC P+S     L+    +  + D A +L+
Sbjct: 561 ETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLY 618


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 107/269 (39%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+   + G  A +  +NIL+ + C  G   LAQ ++  +     K  L+  V 
Sbjct: 117 FKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAI----TKWGLRPSVV 172

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +++T++  +          ++K  M ++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 173 SFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEM 232

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PNS     L+    +  + D A  ++                            
Sbjct: 233 LDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIY---------------------------- 264

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  + + L+NEM   
Sbjct: 265 --KQMLSQ-----------------SLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMK 305

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ I++T LID     G++E A + R
Sbjct: 306 GLKPDKITYTTLIDGSCKEGDLETAFEYR 334



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 96/212 (45%), Gaps = 10/212 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYED 281
           F   +  + K  DL    R  +A +     P++Y    +I+  G+C +     A  ++++
Sbjct: 174 FNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKLDDANELFDE 231

Query: 282 LRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    +  N   F +L++ +  D  +   +E+YK M    +  D+ +YN L+   C  G+
Sbjct: 232 MLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGD 291

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              AQ++  E   +  KG LK D  TY+T++         + A + ++ M+   +  + +
Sbjct: 292 LKQAQDLINE---MSMKG-LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +++LI+     G    A  +  EML  G +P
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKP 379



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 95/214 (44%), Gaps = 6/214 (2%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           C  P +   F   +  F K+ ++  A   +DA  K    P++    T+++     GD  +
Sbjct: 130 CGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 189

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
              +   +++  V  ++Y ++ L+N    + K     E++  M   G++ +  S+  L+ 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLID 249

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G   LA EIY ++        L  D+ TY+T++         + A  +  +M   
Sbjct: 250 GHCKDGRVDLAMEIYKQM----LSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMK 305

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           G+ P+ IT+++LI+     G +E A    + M++
Sbjct: 306 GLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIK 339



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 10/183 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C D     A  IY+ + SQ+++ ++  +N+L+       DLK   
Sbjct: 239 PNSVSFTTLID--GHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQ 296

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   M   G+  D  +Y  L+   C  G+     E   E +    K  ++LD   Y+ +
Sbjct: 297 DLINEMSMKGLKPDKITYTTLIDGSCKEGDL----ETAFEYRKRMIKENIRLDDVAYTAL 352

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +MLS G+ P   T++ +IN     G V     L +EM + G 
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGY 412

Query: 430 EPN 432
            P+
Sbjct: 413 VPS 415


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 114/294 (38%), Gaps = 55/294 (18%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           + ED+    V L+  VF ++M+      DL      +  MQK G+ AD  +Y  L+   C
Sbjct: 342 VVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLC 401

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            AG    A+ +  E   +E KG L +D  TY+ ++  +        A  V   M+   VT
Sbjct: 402 RAGELKEAERVLQE---MEDKG-LDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVT 457

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++L +     G V  A  L  EM   G E N    N L+    +A   ++A R 
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR- 516

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
                   T + + E                                         KP  
Sbjct: 517 --------TMIDMDE--------------------------------------AGLKPDV 530

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            TY  ++ A C   +  R  +L+ EM   G+ P  +++ +L++    SG VEG 
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGG 584



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 9/184 (4%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G C  G   ++  ++  +  + VT N+  + +L +      D+    E+   M   G+  
Sbjct: 434 GYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLEL 493

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           ++ +YN L+   C AGN  L Q +   +   EA   LK DV+TY+TI+     +K    A
Sbjct: 494 NIFTYNSLINGLCKAGN--LEQAMRTMIDMDEAG--LKPDVYTYTTIIGALCQSKELDRA 549

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL-Q 441
             + ++ML  G+ P  +T++ L+N    +G VE    L E ML+    PN+   N L+ Q
Sbjct: 550 HSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609

Query: 442 ACVE 445
            C+E
Sbjct: 610 YCIE 613



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 11/215 (5%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           +PN+     + D  G+C  GD   +  +  ++ S+ + LNI+ +NSL+N    A +L+  
Sbjct: 457 TPNVVTYTALSD--GLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQA 514

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +    +M + G+  D+ +Y  ++ A C +     A  +  E+     KG+ K  + TY+ 
Sbjct: 515 MRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLD---KGI-KPTIVTYNV 570

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F  +   +   ++ E ML   + PNT T++SL+        ++    +++ ML   
Sbjct: 571 LMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQE 630

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
             PN    NIL++   +A     A   F S  + K
Sbjct: 631 VVPNENTYNILIKGHCKARNMKEAL-YFHSEMIEK 664



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 107/275 (38%), Gaps = 44/275 (16%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGE-----------------------------VKHLEAK 356
           SYNILLKA C AG    A +++ E                             +  + A+
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G L+L+   Y++++ +  D      A++V EDM+  GV  +   ++++++     G +  
Sbjct: 315 G-LELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAA 373

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476
           A + F+EM + G   +      L+     A +   A R+ +            ED   + 
Sbjct: 374 ARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEM----------EDKGLDV 423

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKA 534
           D ++     D              H     KR +  P   TY  L    C   D      
Sbjct: 424 DAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVT--PNVVTYTALSDGLCKQGDVCAANE 481

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L++EM + GL  N  ++  LI+    +GN+E A++
Sbjct: 482 LLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR 516



 Score = 45.1 bits (105), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 14/177 (7%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++Y   TII       +  ++ ++ +++  + +   I  +N LMN    +  ++    +
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF----TYS 367
            + M +  +  +  +YN L+K  C+  N     EIY        KG+L  +V     TY+
Sbjct: 588 LEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIY--------KGMLSQEVVPNENTYN 639

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            ++K    A+  + AL    +M+  G      ++++LI          +A  LFE+M
Sbjct: 640 ILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696


>gi|414586026|tpg|DAA36597.1| TPA: hypothetical protein ZEAMMB73_327514 [Zea mays]
          Length = 549

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 107/254 (42%), Gaps = 56/254 (22%)

Query: 308 TLEVYKNMQKLGVMADMASYNILLK--ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
            L V   M   GVM D A+  +L+   AC L          Y  V+ + A GV  LDV T
Sbjct: 117 ALAVLNAMATDGVMPDAAACTVLVGVYACRLH----WFDAAYEVVRWMTANGV-ALDVVT 171

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           YST++     A     AL V + ML  G  PN  T++ +++A   +G++ +A  L E M+
Sbjct: 172 YSTLISGLCSAGRVAEALGVLDLMLEEGCQPNAHTYTPILHAYCTSGMIHEAKELLETMI 231

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
            AG  P++   N+L++A  +AC F+    L                          +E  
Sbjct: 232 AAGFAPSTATYNVLVEALCKACAFNEVDAL--------------------------LEES 265

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVG 543
             +  T                     P T TY+  M   C D   ++  AL+++M +VG
Sbjct: 266 SAKGWT---------------------PDTITYSTYMDGLCKDGRVHKSFALVDKMLSVG 304

Query: 544 LSPNHISWTILIDA 557
           L PN I+  IL+D 
Sbjct: 305 LRPNEITLNILLDG 318



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 104/271 (38%), Gaps = 37/271 (13%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+ + M   G     A+YN+L++A C A       E+   ++   AKG    D  TYST 
Sbjct: 225 ELLETMIAAGFAPSTATYNVLVEALCKA---CAFNEVDALLEESSAKGWTP-DTITYSTY 280

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           +  + + MLS G+ PN IT + L++          A  L E   + G 
Sbjct: 281 MDGLCKDGRVHKSFALVDKMLSVGLRPNEITLNILLDGVCRRSTAWAAKCLLECSAEIGW 340

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF----------RSWTLSKTQVALGEDYDGNTDRI 479
             N    N +++   +  ++    +LF           SWTLS    +L +       R+
Sbjct: 341 HVNVVNYNTVMRRLCDERRWLSVVKLFVDIVKKGIAPNSWTLSIVIHSLCK-----LGRL 395

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEM 539
                 +   +  +  FV +          ++       N L KA     Y    L++ M
Sbjct: 396 -----HEALCLIGSEEFVADV--------VTYNTLIRYLNFLGKA-----YEAYLLLHHM 437

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGALQC 570
              G++PN  ++++LID     G    AL C
Sbjct: 438 IEKGIAPNDTTYSLLIDCLCKEGKFLVALGC 468



 Score = 38.5 bits (88), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           A+ E+  ++  T +   +++ M+    D +   +  +   M  +G+  +  + NILL   
Sbjct: 260 ALLEESSAKGWTPDTITYSTYMDGLCKDGRVHKSFALVDKMLSVGLRPNEITLNILLDGV 319

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C   +T  A +   E     A+    ++V  Y+T+++   D + W   +K+  D++  G+
Sbjct: 320 C-RRSTAWAAKCLLECS---AEIGWHVNVVNYNTVMRRLCDERRWLSVVKLFVDIVKKGI 375

Query: 395 TPNTITWSSLINACANAGLVEQAMHLF 421
            PN+ T S +I++    G + +A+ L 
Sbjct: 376 APNSWTLSIVIHSLCKLGRLHEALCLI 402


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 108/269 (40%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+ + + G  A +  +NIL+   C  G+  +AQ ++  +     K  L+  V 
Sbjct: 123 FKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAI----TKWGLRPSVV 178

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  M ++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 179 SYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEM 238

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L+ G  PNS     L+    +    D A  ++                            
Sbjct: 239 LEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIY---------------------------- 270

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  +   L++EM   
Sbjct: 271 --KQMLSQ-----------------SLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMX 311

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ I++T LID C   G+++ A + R
Sbjct: 312 GLKPDKITYTTLIDGCCKEGDLDTAFEHR 340



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 133/297 (44%), Gaps = 30/297 (10%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++++++ +    +  ++  +N+LMN  +   DL     +   M   GV  D+ +Y
Sbjct: 156 GDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTY 215

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           ++L+   C       A +++ E+  LE KG++   V T++T++       W  +A+++ +
Sbjct: 216 SVLINGLCKESKMDDANKLFDEM--LE-KGLVPNSV-TFTTLIDGHCKNGWVDLAMEIYK 271

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            MLS  + P+ +T+++LI      G ++QA  L +EM   G +P+      L+  C +  
Sbjct: 272 QMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEG 331

Query: 448 QFDRAF---RLFRSWTLSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPNSHY 502
             D AF   ++     +    VA      G     R  + E   ++ ++           
Sbjct: 332 DLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS----------- 380

Query: 503 SSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
                    KP T TY +++   C   D ++   L+ EM+  G  P+ +++ +L++ 
Sbjct: 381 ------VGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C +     A  IY+ + SQ++  ++  +N+L+       DLK   
Sbjct: 245 PNSVTFTTLID--GHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAH 302

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   M   G+  D  +Y  L+  CC  G+   A E     + +  +  ++LD   Y+ +
Sbjct: 303 DLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFE----HRKMMIQENIRLDDVAYTAL 358

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +MLS G+ P+T T++ +IN     G V +   L +EM + G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 430 EPNSQCCNILLQA 442
            P+    N+L+  
Sbjct: 419 VPSVVTYNVLMNG 431


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 108/269 (40%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+++ + G  A +  +NIL+   C  G+  +AQ ++  +     K  L+  V 
Sbjct: 117 FKLVWGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI----TKWGLRPSVV 172

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  ML++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 173 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEM 232

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  ++                            
Sbjct: 233 LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY---------------------------- 264

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  +   L++EM   
Sbjct: 265 --KQMLSQ-----------------SLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMK 305

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+  ++T LID C   G+++ A + R
Sbjct: 306 GLKPDKFTYTTLIDGCCKEGDLDTAFEHR 334



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 150/359 (41%), Gaps = 37/359 (10%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DI +F   +  + +   L  A+  Y  +++H        CR +++       +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YED+       ++Y FN LM+      D++    V+  + K G+   + SYN L+    
Sbjct: 123 FYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 182

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 183 RLGD---LDEGFRLKSAMLASGV-QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 238

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++LI+     G V+ AM ++++ML     P+    N L+    +     +A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDL 298

Query: 456 FRSWTL--------SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
               ++        + T +  G   +G+ D  +  EH+ +    N               
Sbjct: 299 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLD--TAFEHRKRMIQEN--------------- 341

Query: 508 RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
               +     Y  L+   C +   V A  ++ EM +VGL P+  ++T++I+     G+V
Sbjct: 342 ---IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDV 397



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 128/294 (43%), Gaps = 24/294 (8%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++++++ +    +  ++  +N+LMN  +   DL     +   M   GV  D+ +Y
Sbjct: 150 GDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 209

Query: 328 NILLKACCLAGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           ++L+   C       A E++ E  VK L   GV      T++T++          +A+++
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLVKGLVPNGV------TFTTLIDGHCKNGRVDLAMEI 263

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + MLS  ++P+ IT+++LI      G ++QA  L +EM   G +P+      L+  C +
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCK 323

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
               D AF   +       ++    D    T  IS +  + +         V        
Sbjct: 324 EGDLDTAFEHRKRMIQENIRL----DDVAYTALISGLCQEGRS--------VDAEKMLRE 371

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
                 KP   TY +++   C   D ++   L+ EM+  G +P+ +++ +L++ 
Sbjct: 372 MLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +  IY+ + SQ+++ ++  +N+L+       DLK   
Sbjct: 239 PNGVTFTTLID--GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 296

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   M   G+  D  +Y  L+  CC  G+   A E     K +  + + +LD   Y+ +
Sbjct: 297 DLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE---HRKRMIQENI-RLDDVAYTAL 352

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +MLS G+ P+  T++ +IN     G V +   L +EM + G 
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGH 412

Query: 430 EPNSQCCNILLQA 442
            P+    N+L+  
Sbjct: 413 APSVVTYNVLMNG 425


>gi|255584218|ref|XP_002532847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527384|gb|EEF29525.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 505

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 142/340 (41%), Gaps = 61/340 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN+ I  T+ID C   GD  +++ ++  +   N+  N Y +  L+N        K   E
Sbjct: 184 SPNVVIYTTLIDGCCKNGDVRRAKLLFNKMGEVNLVANQYTYTVLINGFFKKGLRKDGFE 243

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +++ MQ  GV  ++ +YN ++   C  G    A E++ E   +  +GV+  +V TY+T++
Sbjct: 244 LFEKMQLDGVFPNLYTYNCMINEFCNEGKLHKAYELFDE---MCKRGVVS-NVVTYNTLI 299

Query: 371 KV---------------------FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
                                  +++   W     +  +M   G++P+ +T++ L NA  
Sbjct: 300 SGLCRKTRIWEAEKLVDQMKRAGYSNGGNWVDVTDLVREMEERGISPSKVTYTILTNAHV 359

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQV 466
             G +E+A H +  M + G  P+     +LL           A +LFRS     L   +V
Sbjct: 360 RLGDMEKAFHFYSSMEKVGLVPDVHIYGVLLHGLCVKGNMKEASKLFRSMAEMKLEPNEV 419

Query: 467 AL-----GEDYDGNTDRISNM--EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                  G    GN+ R      E +DK+ + N  ++                  ++T  
Sbjct: 420 VYNTMINGYCKAGNSFRALRFLKEMEDKRLVPNVASY------------------SSTIG 461

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
           IL    C D  +   + L+N+MR  GL P+   + I+  A
Sbjct: 462 IL----CKDGKWQEAEILLNKMRGSGLEPSVSIYNIISKA 497



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 115/275 (41%), Gaps = 21/275 (7%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            E+  +++K+G+  ++  Y  L+  CC  G+   A+ ++ ++  +     L  + +TY+ 
Sbjct: 172 FELLTDLEKMGLSPNVVIYTTLIDGCCKNGDVRRAKLLFNKMGEVN----LVANQYTYTV 227

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F      +   ++ E M   GV PN  T++ +IN   N G + +A  LF+EM + G
Sbjct: 228 LINGFFKKGLRKDGFELFEKMQLDGVFPNLYTYNCMINEFCNEGKLHKAYELFDEMCKRG 287

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
              N    N L+       +   A +L     + +   + G ++   TD +  ME +   
Sbjct: 288 VVSNVVTYNTLISGLCRKTRIWEAEKLVDQ--MKRAGYSNGGNWVDVTDLVREMEERGIS 345

Query: 489 SITNTPNFVPNSH------------YSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKA 534
               T   + N+H            YSS +K     P    Y +L+   C   +      
Sbjct: 346 PSKVTYTILTNAHVRLGDMEKAFHFYSSMEK-VGLVPDVHIYGVLLHGLCVKGNMKEASK 404

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L   M  + L PN + +  +I+    +GN   AL+
Sbjct: 405 LFRSMAEMKLEPNEVVYNTMINGYCKAGNSFRALR 439



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 39/241 (16%)

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
           E KG ++LDV+TY  ++K   +A  +    ++  D+   G++PN + +++LI+ C   G 
Sbjct: 143 EVKGKIELDVYTYGIMIKGCCEAGVFYKGFELLTDLEKMGLSPNVVIYTTLIDGCCKNGD 202

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
           V +A  LF +M +     N     +L+    +       F LF    L      L   Y+
Sbjct: 203 VRRAKLLFNKMGEVNLVANQYTYTVLINGFFKKGLRKDGFELFEKMQLDGVFPNL-YTYN 261

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACC----- 526
              +   N E K  ++            Y  FD+  +        TYN L+   C     
Sbjct: 262 CMINEFCN-EGKLHKA------------YELFDEMCKRGVVSNVVTYNTLISGLCRKTRI 308

Query: 527 ------------------TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
                              ++  V  L+ EM   G+SP+ +++TIL +A    G++E A 
Sbjct: 309 WEAEKLVDQMKRAGYSNGGNWVDVTDLVREMEERGISPSKVTYTILTNAHVRLGDMEKAF 368

Query: 569 Q 569
            
Sbjct: 369 H 369


>gi|21537126|gb|AAM61467.1| unknown [Arabidopsis thaliana]
          Length = 766

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 114/258 (44%), Gaps = 42/258 (16%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +YN L+   C A     A+E+   +K  E    +K +V T +TIV          MA+  
Sbjct: 408 TYNCLIDGYCRAVKLETAKEVVSRMKEDE----IKPNVVTVNTIVGGMCRHHGLNMAVVF 463

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             DM   GV  N +T+ +LI+AC +   VE+AM+ +E+ML+AGC P+++    L+    +
Sbjct: 464 FMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQ 523

Query: 446 ACQFDRAFRLFR-------SWTLSKTQVALGEDYDGNT-----DRISNMEHKDKQSITNT 493
             +   A R+         S  L    + +G   D N      + +++ME + K      
Sbjct: 524 VRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGK------ 577

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISW 551
                             KP + TYN L+       D+  V+ +M +MR  GL P   ++
Sbjct: 578 ------------------KPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTY 619

Query: 552 TILIDACGGSGNVEGALQ 569
             +IDA    G ++ AL+
Sbjct: 620 GAVIDAYCSVGELDEALK 637



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 125/336 (37%), Gaps = 74/336 (22%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           ++ +   ++   +  N+   N+++      H L   +  + +M+K GV  ++ +Y  L+ 
Sbjct: 425 AKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIH 484

Query: 333 ACCLAGNTVLAQEIYGEVKHLEA---------------------------------KGVL 359
           ACC   N  + + +Y   K LEA                                 +G  
Sbjct: 485 ACCSVSN--VEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGF 542

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
            LD+  Y+ ++ +F D    +   ++  DM   G  P++IT+++LI+        E    
Sbjct: 543 SLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVER 602

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           + E+M + G +P       ++ A     + D A +LF+   L                  
Sbjct: 603 MMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGL------------------ 644

Query: 480 SNMEHKDKQSITNTPNFVPN--SHYSSFDKRFSFK---------PTTTTYNILMKACCTD 528
               H      T   N + N  S   +F +  S K         P   TYN L K C  +
Sbjct: 645 ----HSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFK-CLNE 699

Query: 529 YYRVKA---LMNEMRTVGLSPNHISWTILIDACGGS 561
             + +    LM+EM      PN I+  IL++   GS
Sbjct: 700 KTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGS 735



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 9/208 (4%)

Query: 253 SPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           SP+  I   +I  +C +  D+   R + E L+    +L++  +N L+ +  + ++ +   
Sbjct: 508 SPDAKIYYALISGLCQVRRDHDAIRVV-EKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVY 566

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+  +M+K G   D  +YN L+      G     + +   ++ +   G L   V TY  +
Sbjct: 567 EMLTDMEKEGKKPDSITYNTLI---SFFGKHKDFESVERMMEQMREDG-LDPTVTTYGAV 622

Query: 370 VKVFADAKWWQMALKVKEDM-LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +  +        ALK+ +DM L + V PNT+ ++ LINA +  G   QA+ L EEM    
Sbjct: 623 IDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKM 682

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
             PN +  N L +   E  Q +   +L 
Sbjct: 683 VRPNVETYNALFKCLNEKTQGETLLKLM 710



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 81/182 (44%), Gaps = 8/182 (4%)

Query: 265 VCGICGDYMKSRAIYE---DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLG 319
           + G+  D   +  +YE   D+  +    +   +N+L++      D +    + + M++ G
Sbjct: 552 LIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDG 611

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           +   + +Y  ++ A C  G    A +++   K +     +  +   Y+ ++  F+    +
Sbjct: 612 LDPTVTTYGAVIDAYCSVGELDEALKLF---KDMGLHSKVNPNTVIYNILINAFSKLGNF 668

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
             AL +KE+M    V PN  T+++L          E  + L +EM++  CEPN     IL
Sbjct: 669 GQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEIL 728

Query: 440 LQ 441
           ++
Sbjct: 729 ME 730


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 161/379 (42%), Gaps = 37/379 (9%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAI 278
           ++++   +  F K  ++ +A + +D  ++    P++    ++I   GIC  G  +++R +
Sbjct: 347 NVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIH--GICKSGKMVEAREM 404

Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           + ++  + +  +   + +L++    A ++K    V+  M + G+  ++ +Y  L    C 
Sbjct: 405 FNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCK 464

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G   +A E+  E   +  KG L+ +V+TY+TIV         +  +K+ E+M  AG  P
Sbjct: 465 NGEIDVANELLHE---MSRKG-LQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYP 520

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +TIT+++L++A    G + +A  L   ML    +P     N+L+     +   +   RL 
Sbjct: 521 DTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLI 580

Query: 457 RSWTLSK-------------TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
             W L K              Q  +  +    T+    M  +     +NT N +   H  
Sbjct: 581 E-WMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCK 639

Query: 504 SFDKRFS-----------FKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHIS 550
           + + + +           +  T  TY+ L++       +   + L  EMR  GL      
Sbjct: 640 ARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDI 699

Query: 551 WTILIDACGGSGNVEGALQ 569
           + I +D     GN E  L+
Sbjct: 700 YDIFVDVNYEEGNWEITLE 718



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 134/339 (39%), Gaps = 65/339 (19%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-------T 288
           +L   L+  D  K     P+ YI   II +    G+ +++  +   +R   V       T
Sbjct: 292 ELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYT 351

Query: 289 LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
             I  F  L NV+A       +++  M++  ++ D+ +Y  ++   C +G  V A+E++ 
Sbjct: 352 TVISGFCKLGNVSA-----ACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFN 406

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E   +  KG L+ D  TY+ ++  +  A   + A  V   M+  G+TPN +T+++L +  
Sbjct: 407 E---MLVKG-LEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGL 462

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468
              G ++ A  L  EM + G +PN    N ++    +    ++  +L             
Sbjct: 463 CKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKL------------- 509

Query: 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT- 527
                        ME  D                        F P T TY  LM A C  
Sbjct: 510 -------------MEEMDLA---------------------GFYPDTITYTTLMDAYCKM 535

Query: 528 -DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            +  +   L+  M    L P  +++ +L++    SG +E
Sbjct: 536 GEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLE 574



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/378 (19%), Positives = 140/378 (37%), Gaps = 101/378 (26%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMAS 326
           G  ++++ ++  L    V +++    +F S ++ N   +K  ++V++   +LGV  +  S
Sbjct: 185 GFVLEAQKLFHKLLRYGVVVSVDSCNLFLSRLSCNFEGIKIAVKVFEEFPELGVCWNTVS 244

Query: 327 YNILLKACCLAGNTVLAQEIY-------------------------GE-------VKHLE 354
            NI+L   C  G    A  +                          GE       V  L+
Sbjct: 245 CNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELK 304

Query: 355 AKGVLKLDVFTYSTIV-------------KVFADAKWWQM-------------------- 381
            KG LK D + Y+ I+             ++    + W +                    
Sbjct: 305 GKG-LKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNV 363

Query: 382 --ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
             A K+ ++M    + P+ +T++S+I+    +G + +A  +F EML  G EP+      L
Sbjct: 364 SAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTAL 423

Query: 440 LQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    +A +   AF +             ++ T +A G   +G  D  + + H+      
Sbjct: 424 IDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHE------ 477

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549
                           R   +P   TYN ++   C   +  +   LM EM   G  P+ I
Sbjct: 478 --------------MSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTI 523

Query: 550 SWTILIDACGGSGNVEGA 567
           ++T L+DA    G +  A
Sbjct: 524 TYTTLMDAYCKMGEMAKA 541



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 8/163 (4%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMA 322
           G C  G       + E +  + +  N   FNSLM      ++++ T E+YK M   GVM 
Sbjct: 566 GFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMP 625

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D  +YNIL+K  C A N    +E +   K +  KG   +   TY  +++ F   K +  A
Sbjct: 626 DSNTYNILIKGHCKARN---MKEAWFLHKEMVEKG-YSVTAATYDALIRGFYKRKKFVEA 681

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
            K+ E+M   G+      +   ++     G  E  + L +E +
Sbjct: 682 RKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWEITLELCDEFM 724


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 110/279 (39%), Gaps = 55/279 (19%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           V   LM +     K     Y+ + + G  A +  +NIL+   C  G+  JAQ ++  +  
Sbjct: 96  VLEHLMKLKY--FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAI-- 151

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
              K  L+  V +Y+T++  +          ++K  ML++GV P+  T+S LIN      
Sbjct: 152 --TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKES 209

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
             + A  LF+EML  G  PN      L+    +  + D A  ++                
Sbjct: 210 KXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIY---------------- 253

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYY 530
                         KQ ++                  S  P   TYN L+   C   D  
Sbjct: 254 --------------KQMLSQ-----------------SLSPDLITYNTLIYGLCKKGDLK 282

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +   L++EM   GL P+ I++T LID C   G+++ A +
Sbjct: 283 QAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFE 321



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 128/292 (43%), Gaps = 20/292 (6%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++++++ +    +  ++  +N+LMN  +   DL     +   M   GV  D+ +Y
Sbjct: 139 GDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 198

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           ++L+   C       A E++ E   +  KG++  +   ++T++          +A+++ +
Sbjct: 199 SVLINGXCKESKXDDANELFDE---MLVKGLVP-NXVXFTTLIDGHCKNGRVDLAMEIYK 254

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            MLS  ++P+ IT+++LI      G ++QA HL +EM   G +P+      L+  C +  
Sbjct: 255 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEG 314

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
             D AF   +       ++    D    T  IS +  + +         V          
Sbjct: 315 DLDSAFEHXKRMIQENXRL----DEVXYTALISGLCXEGRS--------VDAEKMLREML 362

Query: 508 RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
               KP   TY +++   C   D ++   L+ EM+  G  P+ +++ +L++ 
Sbjct: 363 SVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 144/357 (40%), Gaps = 33/357 (9%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DJ +F   +  + +   L  A+  Y  + +H        CR +++       +     
Sbjct: 52  RSDJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWG 111

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YE++       ++Y FN LM+      D++    V+  + K G+   + SYN L+    
Sbjct: 112 FYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYI 171

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 172 RLGDL---DEGFRLKSAMLASGV-QPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLV 227

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN + +++LI+     G V+ AM ++++ML     P+    N L+    +     +A  L
Sbjct: 228 PNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 287

Query: 456 FRSWT---LSKTQVALGEDYDG---NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
               +   L   ++      DG     D  S  EH  +    N                 
Sbjct: 288 IDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENX---------------- 331

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
             +     Y  L+   C +   V A  ++ EM +VGL P+  ++T++I+     G+V
Sbjct: 332 --RLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 386



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +  IY+ + SQ+++ ++  +N+L+       DLK   
Sbjct: 228 PNXVXFTTLID--GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 285

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +   M   G+  D  +Y  L+  CC  G+   A E     K +  +   +LD   Y+ +
Sbjct: 286 HLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFE---HXKRMIQENX-RLDEVXYTAL 341

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +MLS G+ P+  T++ +IN     G V +   L +EM + G 
Sbjct: 342 ISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 401

Query: 430 EPNSQCCNILLQA 442
            P+    N+L+  
Sbjct: 402 VPSVVTYNVLMNG 414


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 128/318 (40%), Gaps = 59/318 (18%)

Query: 257 YICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           Y C  +++  G+C D   S A  + + L +  +     ++N+L+N      +L+     +
Sbjct: 156 YTCSILLN--GLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTF 213

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M+   +  D  +YN L+   C A     AQ++  E   ++  GV    V T++T++  
Sbjct: 214 GQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME---MQDNGV-NPTVETFNTLIDA 269

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +      +    V  +M   G+ PN +++ S++NA    G + +A+ + ++M      PN
Sbjct: 270 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 329

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
           +Q  N ++ A VE    D+AF L                                     
Sbjct: 330 AQVYNAIIDAYVEHGPNDQAFILVEKM--------------------------------- 356

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHIS 550
                         K     P+  TYN+L+K  C  +     + ++N +    L P+ +S
Sbjct: 357 --------------KSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVS 402

Query: 551 WTILIDACGGSGNVEGAL 568
           +  LI AC   GN++ AL
Sbjct: 403 YNTLISACCYRGNIDKAL 420



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 140/327 (42%), Gaps = 23/327 (7%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           ++G++     VL+ L   G+ P  +   +   L+   CQ    +GE+E        ++  
Sbjct: 167 KDGKVSIAEEVLQSLVNAGLVPTRVIYNT---LINGYCQ----TGELEGAFSTFGQMKSR 219

Query: 185 RLPVKELDEEFRIVQLC-----VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS 239
            +    +     I  LC      N  D+ + ++   + P  +  F   +  +G+   L  
Sbjct: 220 HIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVET-FNTLIDAYGRTGQLEK 278

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
                   +++   PN+    +I++     G   ++ AI +D+  ++V  N  V+N++++
Sbjct: 279 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 338

Query: 300 V----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
                  +D  F L   + M+  G+   + +YN+L+K  C       A+EI   + +   
Sbjct: 339 AYVEHGPNDQAFIL--VEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHR- 395

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
              L  D  +Y+T++           AL +++ M   G+     T+  LI+    AG + 
Sbjct: 396 ---LIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLN 452

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +  +L+++M+Q    P++   NI+++A
Sbjct: 453 EMEYLYQKMMQNNVVPSNAIHNIMVEA 479



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 129/333 (38%), Gaps = 48/333 (14%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN +    +I      G    +  +++++  + V  N   +N++++  +   DL+    +
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M   G+  +  +YN+LL   C AG       +  E+    A   +  D FTYS +  
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM----ASQKMVPDGFTYSILFD 128

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
             +     +  L +    L  GVT    T S L+N     G V  A  + + ++ AG  P
Sbjct: 129 GLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 188

Query: 432 NSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG--NTDRISN----- 481
                N L+    +  + + AF  F   +S  +    +      +G    +RI+N     
Sbjct: 189 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 248

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL------ 535
           ME +D                          PT  T+N L+ A    Y R   L      
Sbjct: 249 MEMQDN----------------------GVNPTVETFNTLIDA----YGRTGQLEKCFIV 282

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           ++EM+  GL PN +S+  +++A   +G +  A+
Sbjct: 283 LSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 315


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 16/260 (6%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M +LG + ++ SYNILLK  C    +  A E+   +   +  G    DV +Y+T++
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMP--DDGGDCPPDVVSYTTVI 206

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F        A     +ML  G+ PN +T+SS+I A   A  +++AM +   M++ G  
Sbjct: 207 NGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVM 266

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN +  N ++     + Q   A    +               DG    +           
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKM-----------HSDGVEPDVVTYNSLMDYLC 315

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK--ALMNEMRTVGLSPNH 548
            N         + S  KR   KP  TTY  L++   T    V+   L++ M   G+ PNH
Sbjct: 316 KNGRCTEARKMFDSMTKR-GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 374

Query: 549 ISWTILIDACGGSGNVEGAL 568
             ++ILI A    G V+ A+
Sbjct: 375 YVFSILICAYAKQGKVDQAM 394



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 132/304 (43%), Gaps = 30/304 (9%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD  K+   Y ++  + +  N+  ++S++     A  +   +EV  +M K GVM +  +Y
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N ++   C +G     +E  G +K + + GV + DV TY++++           A K+ +
Sbjct: 273 NSIVHGYCSSGQ---PKEAIGFLKKMHSDGV-EPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            M   G+ P   T+ +L+   A  G + +   L + M++ G  PN    +IL+ A  +  
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 448 QFDRAFRLF---RSWTLSKTQVALGEDYD--GNTDRISNMEHKDKQSITNTPNFVPNSHY 502
           + D+A  +F   R   L+   V  G        + R+ +     +Q I            
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI------------ 436

Query: 503 SSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560
              D+R S  P    YN L+ + C    + + K L+ EM   G+  + I +  +ID+   
Sbjct: 437 ---DERLS--PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 561 SGNV 564
            G V
Sbjct: 492 EGRV 495



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 116/253 (45%), Gaps = 18/253 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           IL C + ++ GK   +  A+  +   ++   +P+     T+I +    G    +   +E 
Sbjct: 379 ILICAYAKQ-GK---VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQ 434

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF------TLEVYKNMQKLGVMADMASYNILLKACC 335
           +  + ++    V+NSL+    H L          E+   M   G+  D   +N ++ + C
Sbjct: 435 MIDERLSPGNIVYNSLI----HSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G  + +++++     L  +  +K D+ TYST++  +  A     A K+   M+S G+ 
Sbjct: 491 KEGRVIESEKLF----DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +T+++LIN       +E A+ LF EM  +G  P+    NI+LQ   +  +   A  L
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606

Query: 456 FRSWTLSKTQVAL 468
           +   T S TQ+ L
Sbjct: 607 YVGITESGTQLEL 619



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 152/378 (40%), Gaps = 31/378 (8%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P   + +   +  F K+ DL  A   Y         PN+    +II          K+  
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +   +    V  N   +NS+++   ++   K  +   K M   GV  D+ +YN L+   C
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    A++++  +     K  LK ++ TY T+++ +A          + + M+  G+ 
Sbjct: 316 KNGRCTEARKMFDSM----TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 371

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN   +S LI A A  G V+QAM +F +M Q G  P++     ++    ++ + + A R 
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 456 FRSWT---LSKTQVA---------LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
           F       LS   +          + + +D   + I  M  +     T   N + +SH  
Sbjct: 432 FEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 504 S---------FD--KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHIS 550
                     FD   R   KP   TY+ L+   C      +A  L+  M +VG+ P+ ++
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVT 551

Query: 551 WTILIDACGGSGNVEGAL 568
           +  LI+       +E AL
Sbjct: 552 YNTLINGYCKISRMEDAL 569



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 110/229 (48%), Gaps = 6/229 (2%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A+R ++       SP   +  ++I    I   + K++ +  ++  + + L+   FNS+++
Sbjct: 428 AMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID 487

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
            +  + +   + +++  M ++GV  D+ +Y+ L+   CLAG    A ++   +  +    
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG--- 544

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            +K D  TY+T++  +      + AL +  +M S+GV+P+ IT++ ++           A
Sbjct: 545 -MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAA 603

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
             L+  + ++G +      NI+L    +    D A R+F++  L+  Q+
Sbjct: 604 KELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/330 (20%), Positives = 147/330 (44%), Gaps = 23/330 (6%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           ++G++D  + V  K+ + G+ P  +  G+   +L   C+    SG VE  +   E + + 
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL---CK----SGRVEDAMRYFEQMIDE 438

Query: 185 RLPVKELDEEFRIVQLCV-NKPD------VNLAIRYACIVPRADILFCNFVREFGKKRDL 237
           RL    +     I  LC+ +K D      + +  R  C+     I F + +    K+  +
Sbjct: 439 RLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL---DTIFFNSIIDSHCKEGRV 495

Query: 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           + + + +D   +    P++    T+ID   + G   ++  +   + S  +  +   +N+L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 298 MN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           +N       ++  L +++ M+  GV  D+ +YNI+L+       T  A+E+Y  +     
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI----T 611

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +   +L++ TY+ I+           AL++ +++    +   T T++ +I A    G  +
Sbjct: 612 ESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRND 671

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
           +A  LF  +   G  P+ +  +++ +  +E
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIE 701


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 36/348 (10%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K  +L + +  ++   K    P++    T+ID     GD  ++R ++  + S+    N+ 
Sbjct: 93  KSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVV 152

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNMQK--LGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            ++ L+N       +    E+ + M +    V+ ++ +YN  L   C    T  A E+  
Sbjct: 153 TYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMR 212

Query: 349 EVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
            ++     G L++  D  T+ST++      K  Q      +DM++ G  PN +T+++L+N
Sbjct: 213 SLR----DGSLRVSPDTVTFSTLIDGL--CKCGQTDEACNDDMIAGGYVPNVVTYNALVN 266

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR---SWTLSK 463
               A  +E+A  + E M+  G  P+    ++L+ A  +A + D A  L     S   + 
Sbjct: 267 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 326

Query: 464 TQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
             V      DG   +DR S    +    + N                    P   T+NIL
Sbjct: 327 NVVTFNSIIDGLCKSDR-SGEAFQIALQVYNR----------------MLVPDKVTFNIL 369

Query: 522 MKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           +   C   ++ +  AL  EM    + P+ +++  LID    +G VE A
Sbjct: 370 IAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAA 417



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 118/300 (39%), Gaps = 63/300 (21%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV------NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +   + S+  T N+  FNS+++       +    +  L+VY  M    ++ D  ++NIL+
Sbjct: 315 LLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRM----LVPDKVTFNILI 370

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C AGN   A  ++ E   + AK  ++ DV T+  ++     A   + A  + + M +
Sbjct: 371 AGACKAGNFEQASALFEE---MVAKN-MQPDVMTFGALIDGLCKAGQVEAARDILDLMGN 426

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            GV PN +T++ L++    +G +E+     EEM+ +GC P S     L+ A   A + D 
Sbjct: 427 LGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDD 486

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           A +L                                                   K F +
Sbjct: 487 ALQLVSKL-----------------------------------------------KSFGW 499

Query: 512 KPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            P T TYNIL+          +A+  + EM   G  P+  ++         SGN+ G ++
Sbjct: 500 DPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTME 559



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 121/274 (44%), Gaps = 32/274 (11%)

Query: 324 MASYNILLKACCLAGNTVLAQEIY-GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           +A YNI+L++ C AG T  A EI+ GE+    A+  +   + TY+TI+     +      
Sbjct: 45  VADYNIVLQSLCRAGETARALEIFRGEM----ARDGVAPTIVTYNTIINGLCKSNELGAG 100

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +++ E+++  G  P+ +T+++LI++   AG +E+A  L   M   GC PN    ++L+  
Sbjct: 101 MELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLING 160

Query: 443 CVEACQFDRAFRLFRSWTLSKTQV-----ALGEDYDG------NTDRISNMEHKDKQSIT 491
             +  + D A  L +  T     V           DG        +    M      S+ 
Sbjct: 161 LCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR 220

Query: 492 NTPNFVP------------NSHYSSFDKRFS--FKPTTTTYNILMKACCT--DYYRVKAL 535
            +P+ V              +  +  D   +  + P   TYN L+   C      R  A+
Sbjct: 221 VSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAM 280

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +  M   G++P+ I++++L+DA   +  V+ AL+
Sbjct: 281 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALE 314



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 94/175 (53%), Gaps = 8/175 (4%)

Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           I + G C  G++ ++ A++E++ ++N+  ++  F +L++    A  ++   ++   M  L
Sbjct: 368 ILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 427

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           GV  ++ +YN+L+   C +G     +E    ++ + + G +  +  TY ++V     A  
Sbjct: 428 GVPPNVVTYNVLVHGLCKSGRI---EEPCEFLEEMVSSGCVP-ESMTYGSLVYALCRASR 483

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
              AL++   + S G  P+T+T++ L++    +G  EQA+ + EEM+  G +P+S
Sbjct: 484 TDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDS 538



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 138/344 (40%), Gaps = 35/344 (10%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRA--IYEDLR--SQNVTLNIYVFNSLMNVNAHDLKFTL 309
           PN+    + +D  G+C   M + A  +   LR  S  V+ +   F++L++      +   
Sbjct: 186 PNIITYNSFLD--GLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDE 243

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
               +M   G + ++ +YN L+   C A      +  +  ++ +  KGV   DV TYS +
Sbjct: 244 ACNDDMIAGGYVPNVVTYNALVNGLCKADKM---ERAHAMIESMVDKGVTP-DVITYSVL 299

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           V  F  A     AL++   M S G TPN +T++S+I+    +    +A  +  ++     
Sbjct: 300 VDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRML 359

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ---VALGEDYDGNTDRISNMEHKD 486
            P+    NIL+    +A  F++A  LF        Q   +  G   DG          +D
Sbjct: 360 VPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARD 419

Query: 487 KQSITNTPNFVPN-----------SHYSSFDKRFSF---------KPTTTTYNILMKACC 526
              +       PN                 ++   F          P + TY  L+ A C
Sbjct: 420 ILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALC 479

Query: 527 TDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
                  A  L++++++ G  P+ +++ IL+D    SG  E A+
Sbjct: 480 RASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAI 523



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 20/244 (8%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I +   V  F K   +  AL           +PN+    +IID  G+C       A    
Sbjct: 294 ITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIID--GLCKSDRSGEAFQIA 351

Query: 282 LRSQN-------VTLNIYVFNSLMNVNAHDLKFTLE--VYKNMQKLGVMADMASYNILLK 332
           L+  N       VT NI +  +    N        E  V KNMQ      D+ ++  L+ 
Sbjct: 352 LQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQP-----DVMTFGALID 406

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C AG    A++I   + +L     +  +V TY+ +V     +   +   +  E+M+S+
Sbjct: 407 GLCKAGQVEAARDILDLMGNLG----VPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSS 462

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G  P ++T+ SL+ A   A   + A+ L  ++   G +P++   NIL+    ++ + ++A
Sbjct: 463 GCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQA 522

Query: 453 FRLF 456
             + 
Sbjct: 523 ITVL 526


>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
 gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
          Length = 941

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 108/223 (48%), Gaps = 6/223 (2%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           +KR +  A+   D       SP+ +   TI+      GD  K+   +  +R++ + L+++
Sbjct: 621 EKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVF 680

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            + +L+     +  ++  L V + M    +  +   YNIL+      G+   A ++   +
Sbjct: 681 TYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADL---M 737

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + +  +GV + D+ TY++ +     A     A K  E+M +AGV PN  T+++LI+  AN
Sbjct: 738 QQMNQEGV-QPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWAN 796

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           A L E+A+  FEE+  AG +P+    + L+ + +       A+
Sbjct: 797 ASLPEKALSCFEELKLAGLKPDKAVYHCLMTSLLSRATVAEAY 839



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 12/244 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYED 281
           F   +  F +  ++  AL  +D  ++    P ++    +  V G+       +A  I ++
Sbjct: 577 FMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNAL--VLGLVEKRKMEKAVEILDE 634

Query: 282 LRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    V+ + + + ++M+  A   D     E +  M+  G+  D+ +Y  LLKACC +G 
Sbjct: 635 MALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGR 694

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AKWWQMALKVKEDMLSAGVTPNT 398
               Q      + + A+ + + + F Y+ ++  +A     W+ A  + + M   GV P+ 
Sbjct: 695 M---QSALAVTREMNAQKIPR-NTFVYNILIDGWARRGDIWEAA-DLMQQMNQEGVQPDI 749

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            T++S INAC  AG + +A    EEM  AG +PN +    L+     A   ++A   F  
Sbjct: 750 HTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPEKALSCFEE 809

Query: 459 WTLS 462
             L+
Sbjct: 810 LKLA 813



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 91/452 (20%), Positives = 178/452 (39%), Gaps = 70/452 (15%)

Query: 129 IDCVVGVLKKLNELGV-APLELFDG--SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185
           +D    +++++ E G+ APL+++     G+ +++NE + L+                   
Sbjct: 415 MDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLI------------------- 455

Query: 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245
                    F+ ++ C   P V   I Y C++        N   + GK   +  AL    
Sbjct: 456 --------VFKRLKECGFAPSV---ITYGCLI--------NMYTKIGK---VSKALEVSK 493

Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAH 303
             K      NM     +I+      D+  + A++ED+    +  ++ ++N+++       
Sbjct: 494 MMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMG 553

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           ++   + + K MQK        ++  ++     AG    A EI+  ++     G +   V
Sbjct: 554 NMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRR---SGCIPT-V 609

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            T++ +V    + +  + A+++ ++M  AGV+P+  T++++++  A  G   +A   F +
Sbjct: 610 HTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTK 669

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR---SWTLSKTQVALGEDYDGNTDRIS 480
           M   G + +      LL+AC ++ +   A  + R   +  + +         DG   R  
Sbjct: 670 MRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGD 729

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNE 538
             E  D     N     P+ H               TY   + ACC   D  R    M E
Sbjct: 730 IWEAADLMQQMNQEGVQPDIH---------------TYTSFINACCKAGDMLRATKTMEE 774

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           M   G+ PN  ++T LI     +   E AL C
Sbjct: 775 MEAAGVKPNVKTYTTLIHGWANASLPEKALSC 806



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 147/330 (44%), Gaps = 22/330 (6%)

Query: 244 YDASKKHLSSPNMYICRTII-DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--V 300
           +  +K+  ++ N YI   II   C  C +  ++ A+  ++  + +   + +++++M+   
Sbjct: 387 FKKAKERHTNLNAYIYGNIIYAYCQAC-NMDRAEALVREMEEEGIDAPLDIYHTMMDGYT 445

Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
              + +  L V+K +++ G    + +Y  L+      G    A E+    K +++ G+ K
Sbjct: 446 MIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEV---SKMMKSVGI-K 501

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            ++ TYS ++  F   K W  A  V ED++  G+ P+ + ++++I A    G +++A+H+
Sbjct: 502 HNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHM 561

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
            +EM +  C P S+    ++     A +  RA  +F    + +    +   +  N   + 
Sbjct: 562 VKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIF---DMMRRSGCIPTVHTFNALVLG 618

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNE 538
            +E +  +      + +  +  S         P   TY  +M   A   D  +      +
Sbjct: 619 LVEKRKMEKAVEILDEMALAGVS---------PDEHTYTTIMHGYAALGDTGKAFEYFTK 669

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           MR  GL  +  ++  L+ AC  SG ++ AL
Sbjct: 670 MRNEGLQLDVFTYEALLKACCKSGRMQSAL 699



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 148/360 (41%), Gaps = 62/360 (17%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327
           GD  ++R  +E +R++ +  + +V+ SL++  A   D++  L   + M + G+   + +Y
Sbjct: 308 GDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALSCVRKMNEEGIEMSLVTY 367

Query: 328 NILLKACCLAGN---------------TVLAQEIYGE-----------------VKHLEA 355
           +I++      GN               T L   IYG                  V+ +E 
Sbjct: 368 SIVVGGFAKFGNAEAADCWFKKAKERHTNLNAYIYGNIIYAYCQACNMDRAEALVREMEE 427

Query: 356 KGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
           +G+   LD+  Y T++  +   +  +  L V + +   G  P+ IT+  LIN     G V
Sbjct: 428 EGIDAPLDI--YHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKV 485

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS--KTQVALGEDY 472
            +A+ + + M   G + N +  ++L+   ++   +  AF +F        K  V L  + 
Sbjct: 486 SKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNI 545

Query: 473 D------GNTDRISNM--EHKDKQSITNTPNFVPNSH-----------YSSFD--KRFSF 511
                  GN DR  +M  E + ++    +  F+P  H              FD  +R   
Sbjct: 546 IKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGC 605

Query: 512 KPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            PT  T+N L+          KA  +++EM   G+SP+  ++T ++      G+   A +
Sbjct: 606 IPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFE 665


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 145/356 (40%), Gaps = 23/356 (6%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           PR   +F    R +     L  ++ A    + H  +       ++ID     G   K+ A
Sbjct: 54  PR---IFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALA 110

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +Y  +    +  + Y FN LMN    A  +    ++++ MQ      ++ +Y+IL+ A C
Sbjct: 111 VYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVC 170

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    A +++ ++K   ++G  + ++FTY++++     +     A  + E+M S G+ 
Sbjct: 171 KCGGVEKALKVFLDMK---SRGC-RPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLV 226

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
              + ++SLI+    +G  + A  LF EML  G +P+      L+     A +   A R+
Sbjct: 227 ATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRI 286

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           F+            E  D       N+ +    ++  +             +     P  
Sbjct: 287 FQ------------EARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDV 334

Query: 516 TTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            T+N LM   C     +    L+ +M+  G +P+   +  LID    SG VE A Q
Sbjct: 335 YTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQ 390



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 6/209 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++  C T++++ GI   + ++  +  ++      L   +F  L     +A  L+ ++E 
Sbjct: 17  PSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIELARGYASAGLLEKSVEA 76

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            K M+        ++YN L+ A   AG T  A  +Y     +  +  L+ D +T++ ++ 
Sbjct: 77  LKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVY----RVMGQSGLRPDTYTFNVLMN 132

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F  AK      K+ E+M +   +PN IT+S LI+A    G VE+A+ +F +M   GC P
Sbjct: 133 AFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRP 192

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWT 460
           N      ++    ++   D+AF LF   T
Sbjct: 193 NIFTYTSMIDGLGKSGHVDKAFFLFEEMT 221



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 41/254 (16%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           AL+ +   K     PN++   ++ID  G  G   K+  ++E++ S+ +     V+NSL++
Sbjct: 178 ALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIH 237

Query: 300 ----------------------VNAHDLKFTLEVY---------------KNMQKLGVMA 322
                                 +    + FT  VY               +  + +G   
Sbjct: 238 GLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCAL 297

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+  YN+L+   C +     A EI+GE   LE  G++  DV+T++ ++     +     A
Sbjct: 298 DVNLYNVLIDTLCKSKRLDEAWEIFGE---LEEDGLVP-DVYTFNALMDGLCKSGRIHDA 353

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
             +  DM  AG TP+   +++LI+    +G VE+A  L  EM   G EP+    N L+  
Sbjct: 354 FILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDE 413

Query: 443 CVEACQFDRAFRLF 456
             +  + + A RLF
Sbjct: 414 SCKGGRIEDALRLF 427



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 15/175 (8%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P++Y    ++D  G+C  G    +  +  D++    T ++ V+N+L++    +  ++   
Sbjct: 332 PDVYTFNALMD--GLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAG 389

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   MQ LG   D+ +YN L+   C  G    A  ++ E+    AKG    +  TY+TI
Sbjct: 390 QLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEI---SAKGFA--NTVTYNTI 444

Query: 370 VKVFADAKWWQMALKV----KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
           +     A     A K+    K++ +   + P+ +T+++L+N    AGL E A  L
Sbjct: 445 LNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAGLSELANSL 499



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 66/326 (20%), Positives = 135/326 (41%), Gaps = 43/326 (13%)

Query: 74  YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSI-REGRIDCV 132
           Y  M   L K G +++   + E +  SEG       +++  +V + ++  + R GR D  
Sbjct: 197 YTSMIDGLGKSGHVDKAFFLFEEMT-SEG-------LVATRVVYNSLIHGLGRSGRADAA 248

Query: 133 VGVLKKLNELGVAP-----LELFDGSGFKLLKNECQRLLDSGE---VEMFVGLMEVLEEF 184
             + +++   G+ P       L  G G     +E +R+          + V L  VL + 
Sbjct: 249 AKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDT 308

Query: 185 RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244
               K LDE + I             +    +VP  D+   N + +      L  + R +
Sbjct: 309 LCKSKRLDEAWEIFG----------ELEEDGLVP--DVYTFNALMD-----GLCKSGRIH 351

Query: 245 DA------SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           DA       K+   +P++ +  T+ID     G   ++  +  +++S     ++  +N+L+
Sbjct: 352 DAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLI 411

Query: 299 N--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           +       ++  L +++ +   G  A+  +YN +L   C+AG    A +++  +K     
Sbjct: 412 DESCKGGRIEDALRLFEEISAKG-FANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVD 470

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMA 382
           GV+  D  TY+T++     A   ++A
Sbjct: 471 GVIDPDFVTYTTLLNGARQAGLSELA 496


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 115/264 (43%), Gaps = 18/264 (6%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +E+ + M+K G  AD+  Y  L+   C  GN    +E++ E   +  KG+   +V TYS 
Sbjct: 234 MELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDE---MLGKGI-SANVVTYSC 289

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +V        W+ A  V   M   G+ P+ +T++ LI+     G    AM L   M++ G
Sbjct: 290 LVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKG 349

Query: 429 CEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
            EP++   N+LL   C E    D AF++ R        +  G+  D  T         DK
Sbjct: 350 EEPSNVTYNVLLSGLCKEGLVID-AFKILR------MMIEKGKKADVVTYNTLMKGLCDK 402

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
             +            S FD     +P   T+N+L+   C +    KA  +  +M   G  
Sbjct: 403 GKVDEALKLF----NSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSC 458

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
            N +++ +L+  C  +G ++ A++
Sbjct: 459 GNLVTYNMLLGGCLKAGKIKEAME 482



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 18/237 (7%)

Query: 290 NIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N++ FN L+     + + T  +++++ M K G   ++ +YN+LL  C  AG    A E++
Sbjct: 425 NVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELW 484

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            +V  L   G +  + FTYS ++  F   +   +A  +  +M + G+ P    +++L+ +
Sbjct: 485 KQVLDL---GFVP-NSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMAS 540

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
               G +EQA  LF+EM  A CEP+    N ++   ++A      F+  +   +   ++ 
Sbjct: 541 LCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGD----FQFVKELQMKMVEMG 596

Query: 468 LGED---YDGNTDRISNM----EHKDKQSITNTPNFVPNSH-YSSFDKRFSFKPTTT 516
           L  D   +    +R+S +    E K          F P++  Y S  K  S K  TT
Sbjct: 597 LRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTT 653



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 144/332 (43%), Gaps = 28/332 (8%)

Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRA-------IYEDLRSQNVTLNIYVFNSL 297
           +A  +H   P++     +ID  G+C D   + A       + +     NVT N+ +    
Sbjct: 308 NAMAEHGIHPDVVTYTGLID--GLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLC 365

Query: 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                 D     ++ + M + G  AD+ +YN L+K  C  G    A +++  +   + + 
Sbjct: 366 KEGLVID---AFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM--FDNEN 420

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            L+ +VFT++ ++           A+K+   M+  G   N +T++ L+  C  AG +++A
Sbjct: 421 CLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEA 480

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
           M L++++L  G  PNS   +IL+    +    + A  LF          AL   +D NT 
Sbjct: 481 MELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPAL---FDYNTL 537

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKAL 535
             S  +    +   +    + N++          +P   ++N ++       D+  VK L
Sbjct: 538 MASLCKEGSLEQAKSLFQEMGNANC---------EPDIISFNTMIDGTLKAGDFQFVKEL 588

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             +M  +GL P+ ++++ LI+     G ++ A
Sbjct: 589 QMKMVEMGLRPDALTFSTLINRLSKLGELDEA 620



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 125/309 (40%), Gaps = 22/309 (7%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P+   C  ++D      +Y  + ++Y  +   +V  +    ++L+    +A   +    V
Sbjct: 72  PSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGV 131

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              + K G   ++   NI+LK  C  G      E  G ++ +  K V   D+ +Y+T++ 
Sbjct: 132 VGLVLKRGFTVNVFIMNIVLKGLCRNGGVF---EAMGLIREMGRKSV-SPDIVSYNTLIN 187

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               AK  + A+ +  +M +AG  PN++T ++L++     G +++AM L E M + G + 
Sbjct: 188 GLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDA 247

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD-KQSI 490
           +      L+         DR   LF           LG+    N    S + H   +   
Sbjct: 248 DVVLYGTLISGFCNNGNLDRGKELFDEM--------LGKGISANVVTYSCLVHGLCRLGQ 299

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNH 548
               N V N+            P   TY  L+   C D     A  L+N M   G  P++
Sbjct: 300 WKEANTVLNAM-----AEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSN 354

Query: 549 ISWTILIDA 557
           +++ +L+  
Sbjct: 355 VTYNVLLSG 363



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMK--SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN +    +ID  G C   M   ++ ++ ++R+  +   ++ +N+LM        L+   
Sbjct: 494 PNSFTYSILID--GFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAK 551

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +++ M       D+ S+N ++     AG+    +E+  ++K +E    L+ D  T+ST+
Sbjct: 552 SLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKEL--QMKMVEMG--LRPDALTFSTL 607

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +   +       A    E M+++G TP+ + + SL+   ++ G   + ++L  +M   G
Sbjct: 608 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKG 666


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 136/331 (41%), Gaps = 72/331 (21%)

Query: 254 PNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--------VNAH 303
           P   I  T+I+  G C   D   +  I+E ++S+++  +   +N+L+N          A 
Sbjct: 189 PTTVIYNTLIN--GYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAE 246

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           DL         M+K GV   + ++N L+ A   AG     ++ +  +  ++ KG+ K DV
Sbjct: 247 DLVM------EMEKSGVDPSVETFNTLIDAYGTAGQL---EKCFTVLSDMQQKGI-KSDV 296

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            ++ ++VK F        A+ + +DM+   V PN   ++S+I+A   +G  EQA  L E+
Sbjct: 297 ISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEK 356

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M  +G   +    N+LL+    + Q D A  L   +TL                      
Sbjct: 357 MKNSGVSASIVTYNLLLKGLCRSSQIDEAEELI--YTL---------------------- 392

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRT 541
                                  +    +P   +YN ++ ACC   D  +   L+ EM  
Sbjct: 393 -----------------------RNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 429

Query: 542 VGLSPNHISWTILIDACGGSGNVEGALQCRF 572
            G+ P   ++  L+ A   +G V   ++C +
Sbjct: 430 YGIRPTLRTYHTLVSALASAGRVHD-MECLY 459



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 7/183 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   ++ AI +D+  ++V  N  V+NS+++  + + D +    + + M+  GV A + +Y
Sbjct: 310 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTY 369

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N+LLK  C +     A+E+   +  L  +G L+ DV +Y+TI+    +      AL++ +
Sbjct: 370 NLLLKGLCRSSQIDEAEEL---IYTLRNQG-LRPDVVSYNTIISACCNKGDTDKALELLQ 425

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M   G+ P   T+ +L++A A+AG V     L+++ML    EP+S    I++ A V  C
Sbjct: 426 EMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVR-C 484

Query: 448 QFD 450
           + D
Sbjct: 485 END 487



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/349 (19%), Positives = 148/349 (42%), Gaps = 45/349 (12%)

Query: 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
           +  +VP   +++   +  + + RDL  A   ++  K     P+      +I+  G+C   
Sbjct: 184 HTGLVPTT-VIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN--GLCKLE 240

Query: 273 MKSRA--IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN 328
           M ++A  +  ++    V  ++  FN+L++    A  L+    V  +MQ+ G+ +D+ S+ 
Sbjct: 241 MVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFG 300

Query: 329 ILLKACCLAGN-----TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
            ++KA C  G       +L   IY +V           +   Y++I+  + ++   + A 
Sbjct: 301 SVVKAFCKNGKIPEAVAILDDMIYKDVAP---------NAQVYNSIIDAYIESGDTEQAF 351

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
            + E M ++GV+ + +T++ L+     +  +++A  L   +   G  P+    N ++ AC
Sbjct: 352 LLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISAC 411

Query: 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYD-----GNTDRISNMEHKDKQSITNTPNFVP 498
                 D+A  L +       +  L   +       +  R+ +ME   +Q +        
Sbjct: 412 CNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHK------ 465

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLS 545
                      + +P+++ Y I++ A   C +  +V +L  EM   G++
Sbjct: 466 -----------NVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIA 503



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/400 (20%), Positives = 148/400 (37%), Gaps = 69/400 (17%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           GK  D   AL+ +D        PN     T+ID     GD      + + +       NI
Sbjct: 30  GKGSD---ALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNI 86

Query: 292 YVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             +N L++    A  +  T  +   M    +  D  +Y+IL       G +     ++ E
Sbjct: 87  VTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAE 146

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
                 KGV+ L  +T S ++           A +V E ++  G+ P T+ +++LIN   
Sbjct: 147 SLK---KGVM-LGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYC 202

Query: 410 NAGLVEQAMHLFE-----------------------------------EMLQAGCEPNSQ 434
               +  A  +FE                                   EM ++G +P+ +
Sbjct: 203 QVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVE 262

Query: 435 CCNILLQACVEACQFDRAFRLF--------RSWTLSKTQVALGEDYDGNTDR----ISNM 482
             N L+ A   A Q ++ F +         +S  +S   V      +G        + +M
Sbjct: 263 TFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDM 322

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSF-----------KPTTTTYNILMKACC--TDY 529
            +KD        N + +++  S D   +F             +  TYN+L+K  C  +  
Sbjct: 323 IYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQI 382

Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              + L+  +R  GL P+ +S+  +I AC   G+ + AL+
Sbjct: 383 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALE 422



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 33/270 (12%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D  SYN+++     +G    A +++ E+  +   GV+  +  TY+T++         +  
Sbjct: 15  DAFSYNVVIAGLWRSGKGSDALKVFDEMVDM---GVVP-NWITYNTMIDGHVKGGDLEAG 70

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            ++++ ML  G  PN +T++ L++    AG +++   L +EM      P+    +IL   
Sbjct: 71  FRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDG 130

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDY----------DGNTDR----ISNMEHKDKQ 488
                +      LF      K  V LG             DG   +    +  + H    
Sbjct: 131 LTRTGESRTMLSLFAESL--KKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLV 188

Query: 489 SITNTPNFVPNSHYSSFDKRFSF-----------KPTTTTYNILMKACCTDYYRVKA--L 535
             T   N + N +    D R +F           +P   TYN L+   C      KA  L
Sbjct: 189 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDL 248

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           + EM   G+ P+  ++  LIDA G +G +E
Sbjct: 249 VMEMEKSGVDPSVETFNTLIDAYGTAGQLE 278



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 50/96 (52%)

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
           ++G    D F+Y+ ++     +     ALKV ++M+  GV PN IT++++I+     G +
Sbjct: 8   SEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDL 67

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
           E    L ++ML  G +PN    N+LL     A + D
Sbjct: 68  EAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMD 103


>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02060, chloroplastic; Flags: Precursor
 gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 134/295 (45%), Gaps = 44/295 (14%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           V   D  F + +R +G       +++ +   K+   SP++    +++ +    G    + 
Sbjct: 134 VKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAH 193

Query: 277 AIYEDLR-SQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKA 333
            +++++R +  VT + Y FN+L+N    +  +     ++K+M+      D+ +YN ++  
Sbjct: 194 DLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDG 253

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C AG   +A  +   +  L+    +  +V +Y+T+V+ +   +    A+ V  DMLS G
Sbjct: 254 LCRAGKVKIAHNVLSGM--LKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRG 311

Query: 394 VTPNTITWSSLI----------------------------NACA---------NAGLVEQ 416
           + PN +T+++LI                            +AC          +AG ++ 
Sbjct: 312 LKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDA 371

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
           AM +F+EML     P+S   ++L++      +FDRA  LF    L + +V LG+D
Sbjct: 372 AMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNE--LFEKEVLLGKD 424



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 131/309 (42%), Gaps = 70/309 (22%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--------NAHDLKFTLEVY 312
           ++I   G  G + +S  +++ ++   ++ ++  FNSL+++         AHDL      +
Sbjct: 143 SLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDL------F 196

Query: 313 KNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
             M++  GV  D  ++N L+   C      +  E +   K +E       DV TY+TI+ 
Sbjct: 197 DEMRRTYGVTPDSYTFNTLINGFC---KNSMVDEAFRIFKDMELYHC-NPDVVTYNTIID 252

Query: 372 VFADAKWWQMALKVKEDML--SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
               A   ++A  V   ML  +  V PN +++++L+        +++A+ +F +ML  G 
Sbjct: 253 GLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGL 312

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +PN+   N L++   EA ++D               + +G    GN              
Sbjct: 313 KPNAVTYNTLIKGLSEAHRYDEI-----------KDILIG----GN-------------- 343

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM---NEMRTVGLSP 546
                           D   +F P   T+NIL+KA C D   + A M    EM  + L P
Sbjct: 344 ----------------DAFTTFAPDACTFNILIKAHC-DAGHLDAAMKVFQEMLNMKLHP 386

Query: 547 NHISWTILI 555
           +  S+++LI
Sbjct: 387 DSASYSVLI 395



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 114/262 (43%), Gaps = 18/262 (6%)

Query: 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           L+ V A  L+F    +  +   G      S+ ++L+    A N  +A+     ++   + 
Sbjct: 77  LIKVPADGLRF----FDWVSNKGFSHKEQSFFLMLEFLGRARNLNVARNFLFSIER-RSN 131

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G +KL    ++++++ + +A  +Q ++K+ + M   G++P+ +T++SL++     G    
Sbjct: 132 GCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGM 191

Query: 417 AMHLFEEMLQA-GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
           A  LF+EM +  G  P+S   N L+    +    D AFR+F+   L          Y  N
Sbjct: 192 AHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMEL----------YHCN 241

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL 535
            D ++     D            N       K     P   +Y  L++  C      +A+
Sbjct: 242 PDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAV 301

Query: 536 M--NEMRTVGLSPNHISWTILI 555
           +  ++M + GL PN +++  LI
Sbjct: 302 LVFHDMLSRGLKPNAVTYNTLI 323


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 5/169 (2%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  + +L++      DL   +E+ + M + G   +  +YN ++   C       A +++
Sbjct: 148 NVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLF 207

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
              K +E  G    DVFTYSTIV     +     A ++ E M+S G +PN +T+SSL++ 
Sbjct: 208 ---KEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHG 264

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
              AG +++A  L + M ++GC PN    N ++    +  + D A+ L 
Sbjct: 265 LCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLL 313



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 108/505 (21%), Positives = 216/505 (42%), Gaps = 67/505 (13%)

Query: 74  YADMASKLAKDGRLEEFAMIVESVVVSEG---NVSKFASMLSLEMVASGIVKSIREGRID 130
           Y+ +   L K G++++   +VE++V S+G   NV  ++S+L       G+ K+   G++D
Sbjct: 223 YSTIVDSLVKSGKVDDACRLVEAMV-SKGCSPNVVTYSSLLH------GLCKA---GKLD 272

Query: 131 CVVGVLKKLNELGVAPL-----ELFDG--------SGFKLLKNECQRLLDSGEVEMFVGL 177
               +L+++   G +P       + DG          + LL    + ++D G     V  
Sbjct: 273 EATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLL----EEMVDGGCQPNVVTY 328

Query: 178 MEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237
             +L+ F     + ++   +V++ V K  V     Y  ++     +FC       KK ++
Sbjct: 329 TVLLDAF-CKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLD----MFC-------KKDEV 376

Query: 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY--EDLRSQNVTLNIYVFN 295
             A +   +  +    PN+    T+I   G+C        +   E + S N   +I  FN
Sbjct: 377 ERACQLLSSMIQKGCVPNVVSYNTVI--AGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 434

Query: 296 SLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           ++++     + +    E++  +Q+ G   ++ +YN L+   C +     A+ +   ++ +
Sbjct: 435 TIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL---LREM 491

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
             K     D+ TY+T++     +K    A K+   MLS G+ P+ +T+S +I++      
Sbjct: 492 TRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRF 551

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
           +++A ++ E ML+ G +P +     L+    +    D+A  + +   LSK        + 
Sbjct: 552 MDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQ-LLLSKGSYPDVVTFS 610

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK 533
              D +S    + +Q+       +          R    P T TYN L+K  C D  R +
Sbjct: 611 IFIDWLSK-RGRLRQAGELLETML----------RAGLVPDTVTYNTLLKGFC-DASRTE 658

Query: 534 ---ALMNEMRTVGLSPNHISWTILI 555
               L   MR  G  P++ ++T L+
Sbjct: 659 DAVDLFEVMRQCGCEPDNATYTTLV 683



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 157/374 (41%), Gaps = 64/374 (17%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           A R  +A      SPN+    +++   G+C  G   ++ A+ + +     + NI  +N++
Sbjct: 239 ACRLVEAMVSKGCSPNVVTYSSLLH--GLCKAGKLDEATALLQRMTRSGCSPNIVTYNTI 296

Query: 298 MNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           ++ +   L    E Y  ++++   G   ++ +Y +LL A C  G    A++  G V+ + 
Sbjct: 297 IDGHCK-LGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK---AEDAIGLVEVMV 352

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            KG +  ++FTY++++ +F      + A ++   M+  G  PN ++++++I     A  V
Sbjct: 353 EKGYVP-NLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKV 411

Query: 415 EQAMHLFEEML-----------------------------------QAGCEPNSQCCNIL 439
            + + L E+ML                                   ++GC PN    N L
Sbjct: 412 HEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSL 471

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
           +    ++ +FD+A  L R  T  +        Y+   D +   +  D+            
Sbjct: 472 VHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRA----------- 520

Query: 500 SHYSSFDKRFS--FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILI 555
             Y  F +  S    P   TY+I++ + C   +  +A  ++  M   G  P  I++  LI
Sbjct: 521 --YKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLI 578

Query: 556 DACGGSGNVEGALQ 569
           D    +GN++ AL+
Sbjct: 579 DGFCKTGNLDKALE 592



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 11/208 (5%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           A R  D   +    PN+    T++D  G C  GD   +  +   +  +    N   +N++
Sbjct: 133 ACRVMDKMIQRGCQPNVITYGTLVD--GFCRVGDLDGAVELVRKMTERGYRPNAITYNNI 190

Query: 298 MN--VNAHDLKFTLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           M+   +   L   L+++K M++ G    D+ +Y+ ++ +   +G    A  +   V+ + 
Sbjct: 191 MHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRL---VEAMV 247

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
           +KG    +V TYS+++     A     A  + + M  +G +PN +T++++I+     G +
Sbjct: 248 SKGC-SPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRI 306

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           ++A HL EEM+  GC+PN     +LL A
Sbjct: 307 DEAYHLLEEMVDGGCQPNVVTYTVLLDA 334



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 175/420 (41%), Gaps = 61/420 (14%)

Query: 57  TALLSTVRRDLSSRNDY-YADMASKLAKDGRLEEFAMIVESVVVS--EGNVSKFASMLSL 113
           TALL  + R   S N   Y  +     K GR++E   ++E +V    + NV  +  +L  
Sbjct: 275 TALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLD- 333

Query: 114 EMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL--KNECQR------- 164
                      + G+ +  +G+++ + E G  P      S   +   K+E +R       
Sbjct: 334 --------AFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSS 385

Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK--PDV---NLAIRYACIVPR 219
           ++  G V   V    V+       K  +    + Q+  N   PD+   N  I   C   R
Sbjct: 386 MIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYR 445

Query: 220 ADILF--CNFVREFGKKRDLVS---------ALRAYDA--------SKKHLSSPNMYICR 260
            DI +   N ++E G   +LV+           R +D         ++K   SP++    
Sbjct: 446 VDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYN 505

Query: 261 TIIDVCGICGDYMKSRA-------IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313
           T+ID  G+C      RA       + + L   +VT +I V +SL      D      V +
Sbjct: 506 TVID--GLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSI-VISSLCKWRFMDEANN--VLE 560

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
            M K G      +Y  L+   C  GN   A EI   ++ L +KG    DV T+S  +   
Sbjct: 561 LMLKNGFDPGAITYGTLIDGFCKTGNLDKALEI---LQLLLSKGSYP-DVVTFSIFIDWL 616

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           +     + A ++ E ML AG+ P+T+T+++L+    +A   E A+ LFE M Q GCEP++
Sbjct: 617 SKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDN 676



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 120/304 (39%), Gaps = 34/304 (11%)

Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+++N    +  L   + + + M   G   ++ SYN +L   C A     A  +   ++
Sbjct: 47  YNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL---LE 103

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            +  +G    DV +Y+T++           A +V + M+  G  PN IT+ +L++     
Sbjct: 104 QMVMRGCPP-DVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 162

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
           G ++ A+ L  +M + G  PN+   N ++       + D A +LF+    S +       
Sbjct: 163 GDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFT 222

Query: 472 YDGNTDRISNMEHKDKQ--------SITNTPNFVPNSHY-------SSFDK--------- 507
           Y    D +      D          S   +PN V  S            D+         
Sbjct: 223 YSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMT 282

Query: 508 RFSFKPTTTTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           R    P   TYN ++   C    R+     L+ EM   G  PN +++T+L+DA    G  
Sbjct: 283 RSGCSPNIVTYNTIIDGHCK-LGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKA 341

Query: 565 EGAL 568
           E A+
Sbjct: 342 EDAI 345



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 106/274 (38%), Gaps = 48/274 (17%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL-EAKGVLKLDVFTYSTIVKVF 373
           M + G+ A    +  +L+  C AG    A      V H  E       D  TY+T++   
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDA------VLHFREMSKTCPPDSVTYNTMINGL 54

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           + +     A+++ E+M+  G  PN  +++++++    A  VE A+ L E+M+  GC P+ 
Sbjct: 55  SKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDV 114

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQ---VALGE---------DYDGNTDRISN 481
                ++    +  Q D A R+         Q   +  G          D DG  + +  
Sbjct: 115 VSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRK 174

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEM 539
           M  +                         ++P   TYN +M   C+      A  L  EM
Sbjct: 175 MTER------------------------GYRPNAITYNNIMHGLCSGRKLDSALQLFKEM 210

Query: 540 RTVG-LSPNHISWTILIDACGGSGNVEGALQCRF 572
              G   P+  +++ ++D+   SG V+ A  CR 
Sbjct: 211 EESGSCPPDVFTYSTIVDSLVKSGKVDDA--CRL 242


>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Brachypodium distachyon]
          Length = 857

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 33/330 (10%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           T+I + G    +   R +  ++        +  +N +++    A+ L+  ++V++ M++ 
Sbjct: 369 TMIGILGQARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEEA 428

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  +Y  L+     AG   +A ++YG ++ +     L  D FTYS +V        
Sbjct: 429 GYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVG----LSPDTFTYSAMVNCLGKGGQ 484

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A K+  +M+  G TPN +T++ +I   A A   +  + L+ +M  AG  P+    +I
Sbjct: 485 LAAAYKLFCEMIENGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQVAGFRPDKITYSI 544

Query: 439 LLQACVEACQFDRAFRLF----RSWTLSKTQVALGEDY---DGNTDRISNMEHKDKQSIT 491
           +++        D A  +F    R W   +    L  D     GN D+     H   Q   
Sbjct: 545 VMEVLGHCGHLDEAEAVFIEMRRDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGL 604

Query: 492 NTPNFVP--NSHYSSFDKRFSFK---------------PTTTTYNILMKACCTDYYRVKA 534
             PN VP  NS  S+F K   F+               P+  TY +L+ +CCTD +    
Sbjct: 605 Q-PN-VPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLL-SCCTDAHAQMG 661

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           L  ++  +   P H+    L DA  G  NV
Sbjct: 662 LCCQLMAITGHPAHMFLLYLPDAEPGGENV 691



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 36/228 (15%)

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           L+ +   K D  TY+T++ +   A+ + +   +  +M      P  +T++ +I+A   A 
Sbjct: 354 LKRQPGFKHDGHTYTTMIGILGQARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYGRAN 413

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
            + +A+ +FEEM +AG EP+      L+    +A   + A  L+        +V L  D 
Sbjct: 414 YLREAVKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYG----RMQEVGLSPDT 469

Query: 472 --YD------GNTDRISNMEHKDKQSITN--TPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
             Y       G   +++       + I N  TPN V                   TYNI+
Sbjct: 470 FTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLV-------------------TYNII 510

Query: 522 --MKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             ++A   +Y  V  L  +M+  G  P+ I+++I+++  G  G+++ A
Sbjct: 511 IALQAKARNYDNVVKLYRDMQVAGFRPDKITYSIVMEVLGHCGHLDEA 558


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 18/263 (6%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           + ++K M++ G   D+ +YN ++ + C       A E   E   +  +G+   +  TYST
Sbjct: 358 IRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSE---MVDRGIPP-NAVTYST 413

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I+  F +      A ++ ++M+   V PNT+T+S L++     G+V +A  +FE M + G
Sbjct: 414 ILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKG 473

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            EPN    N L+      C+ + A ++F    + K        Y+   +   N    DK 
Sbjct: 474 VEPNIYTYNALMNGYCLRCKMNEARKVFE-IMVGKGCAPDLHSYNILINGYCNSRRMDKA 532

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSP 546
               T   V         K+ +  P T TYN +MK  C        + L  +M + G+ P
Sbjct: 533 KALLTQMSV---------KKLT--PNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLP 581

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
             ++++IL++     G+++ AL+
Sbjct: 582 TLMTYSILLNGLCKHGHLDEALK 604



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 107/254 (42%), Gaps = 45/254 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           PN      ++D  G+C + M S A  ++E +  + V  NIY +N+LMN      K     
Sbjct: 441 PNTLTFSILVD--GLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEAR 498

Query: 310 EVYKNMQKLGVMADMASYNIL-----------------------------------LKAC 334
           +V++ M   G   D+ SYNIL                                   +K  
Sbjct: 499 KVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGL 558

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C  G  + AQE++   K + + G+L   + TYS ++           ALK+ + M    +
Sbjct: 559 CYVGRLLDAQELF---KKMCSSGMLP-TLMTYSILLNGLCKHGHLDEALKLFKSMKEKKL 614

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+ I ++ LI      G +E A  LF ++   G +P  +  N++++  ++    D A+ 
Sbjct: 615 EPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYE 674

Query: 455 LFRSWTLSKTQVAL 468
           LFR W + K  V +
Sbjct: 675 LFRKWKMMKHNVII 688



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 71/128 (55%), Gaps = 4/128 (3%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M   GV   + S NIL+   C   +   A  ++G++  L     ++ DV T++T++    
Sbjct: 119 MDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLG----IQPDVITFTTLINGVC 174

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           +    ++A+++  +M+ +G  P+ I++++LIN   N+G    A+H+F++M Q GC+PN  
Sbjct: 175 NEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVV 234

Query: 435 CCNILLQA 442
             N ++ +
Sbjct: 235 TYNTIIDS 242



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 102/216 (47%), Gaps = 10/216 (4%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTL 309
           PN     TI+   G C  G   ++  +++++  +NV  N   F+ L++    +  +    
Sbjct: 406 PNAVTYSTILH--GFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEAR 463

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            V++ M + GV  ++ +YN L+   CL      A++++   + +  KG    D+ +Y+ +
Sbjct: 464 WVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVF---EIMVGKGCAP-DLHSYNIL 519

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  + +++    A  +   M    +TPNT+T+++++      G +  A  LF++M  +G 
Sbjct: 520 INGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGM 579

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
            P     +ILL    +    D A +LF+S    K +
Sbjct: 580 LPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLE 615



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 31/242 (12%)

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
           LG +A M  Y+ ++  C          +++G V H          V++ + ++       
Sbjct: 100 LGSIAKMKQYSTVVYLCN-------QMDLFG-VTH---------TVYSLNILINCLCRLN 142

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
               A+ V   M   G+ P+ IT+++LIN   N G ++ A+ L+ EM+++G EP+    N
Sbjct: 143 HVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYN 202

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
            L+     +   + A  +F+    +  +  +   Y+   D +     KD+  + +  +F+
Sbjct: 203 TLINGLCNSGNTNMAVHVFKKMEQNGCKPNV-VTYNTIIDSLC----KDRL-VNDAMDFL 256

Query: 498 PNSHYSSFDKRFSFKPTTTTYN-ILMKACCTDYY-RVKALMNEMRTVGLSPNHISWTILI 555
                S    R    P   TYN I+   CC         L   M   G  P+ +++ I+I
Sbjct: 257 -----SEMVGR-GIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIII 310

Query: 556 DA 557
           D+
Sbjct: 311 DS 312


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 157/346 (45%), Gaps = 31/346 (8%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K+ + V ALR  D         N+ + R+++    + GD   +  +++++    V  ++ 
Sbjct: 302 KQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVV 361

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           +F+ L+N      D++   E+Y  M+ +G+  ++   N LL+         L +  YG  
Sbjct: 362 IFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGF---HEQNLLEHAYGLF 418

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
                 G+   +V TY+ ++K   +      A  + E M+S G+TP+ +++++LI     
Sbjct: 419 DEAVEHGIT--NVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCK 476

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW---TLSKTQVA 467
            G +++A  + + +L+ G +PN+    +L+    +    +RAF +F       ++ T   
Sbjct: 477 KGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHT 536

Query: 468 LGEDYD--GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525
                +  G T R+S  E +DK +     NF+          +  F  T+ TYN ++   
Sbjct: 537 FNTVINGLGKTGRVS--ETQDKLN-----NFI----------KQGFVSTSITYNSIIDGF 579

Query: 526 CTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             +     AL+   EM   G+SP+ I++T LID    S  +  AL+
Sbjct: 580 FKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALE 625



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 151/352 (42%), Gaps = 46/352 (13%)

Query: 234 KRDLV-SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           +R++V  A + YD   +     + Y    ++  C   G + +    +++ + + + ++  
Sbjct: 197 RRNMVCDARQLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAA 256

Query: 293 VFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            ++ L+       DL    E+ K M++ G +    +Y  ++ AC   GN V A  +  E+
Sbjct: 257 AYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEM 316

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
             +     L ++V    +++K +       +AL++ ++++  GV P+ + +S LIN C+ 
Sbjct: 317 VSVG----LPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSK 372

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-RSWTLSKTQVA-- 467
            G +E+A  L+  M   G +PN    N LL+   E    + A+ LF  +     T V   
Sbjct: 373 VGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGITNVVTY 432

Query: 468 ------LGEDYDGNTDRISNM-EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
                 LGE   G  +   N+ E    + IT                     P+  +YN 
Sbjct: 433 NILLKWLGE--LGKVNEACNLWEKMVSKGIT---------------------PSLVSYNN 469

Query: 521 LM----KACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           L+    K  C D  +  +++  +   GL PN +++T+LID     G+ E A 
Sbjct: 470 LILGHCKKGCMD--KAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAF 519



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 151/354 (42%), Gaps = 41/354 (11%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P A + +   +  F KK D   A   ++       +P  +   T+I+  G  G   +++ 
Sbjct: 497 PNA-VTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQD 555

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
              +   Q        +NS+++       +   L  Y+ M + G+  D+ +Y  L+   C
Sbjct: 556 KLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLC 615

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +    LA E++ ++K+   KG +KLDV  YS ++  F      + A K   ++L  G+T
Sbjct: 616 KSNKIGLALEMHSDMKY---KG-MKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLT 671

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PNT+ ++S+I+   +   +E A++L +EM++     + Q    ++   ++  +   A  L
Sbjct: 672 PNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDL 731

Query: 456 FRSWTLSK---------TQVALGEDYDGNTDRISN-MEHKDKQSITNTPNFVPNSHYSSF 505
           + S  LSK         T +  G   +G  +  S  ++  D  +IT              
Sbjct: 732 Y-SEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNIT-------------- 776

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
                  P+   YNIL+     +    +A  L +EM   GL P+  ++ IL++ 
Sbjct: 777 -------PSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 823


>gi|326509863|dbj|BAJ87147.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 757

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 83/148 (56%), Gaps = 4/148 (2%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +++++ M +LG+     SYN +LKA    G   +A+ +Y     + A GV    + TY+T
Sbjct: 202 VKLFRLMPELGITRTALSYNAVLKAILCRGREAMARRVYNA---MIADGVAPT-LSTYNT 257

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F   K  + A++V  DM   GV P+  T+++L+NA    G +E A  +F+EM +AG
Sbjct: 258 LIWGFGLCKKMESAVRVFGDMKGHGVAPDVTTYNTLLNAWVRKGDLESARKVFDEMPEAG 317

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
            E NS   N++++  V+A + + A  LF
Sbjct: 318 LERNSISYNVMIKGYVDANKVEEALGLF 345



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 4/130 (3%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           VY  M   GV   +++YN L+    L      A  ++G++K     GV   DV TY+T++
Sbjct: 239 VYNAMIADGVAPTLSTYNTLIWGFGLCKKMESAVRVFGDMK---GHGVAP-DVTTYNTLL 294

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +      + A KV ++M  AG+  N+I+++ +I    +A  VE+A+ LF EM + G  
Sbjct: 295 NAWVRKGDLESARKVFDEMPEAGLERNSISYNVMIKGYVDANKVEEALGLFTEMGEKGLR 354

Query: 431 PNSQCCNILL 440
              +   +L+
Sbjct: 355 LTEKTFAVLM 364



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 8/191 (4%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A R Y+A      +P +    T+I   G+C     +  ++ D++   V  ++  +N+L+N
Sbjct: 236 ARRVYNAMIADGVAPTLSTYNTLIWGFGLCKKMESAVRVFGDMKGHGVAPDVTTYNTLLN 295

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
             V   DL+   +V+  M + G+  +  SYN+++K    A      +E  G    +  KG
Sbjct: 296 AWVRKGDLESARKVFDEMPEAGLERNSISYNVMIKGYVDANKV---EEALGLFTEMGEKG 352

Query: 358 VLKLDVFTYSTIVKVFADAKWWQM-ALKVKEDMLSAGVTP-NTITWSSLINACANAGLVE 415
            L+L   T++ ++    D +     A K   DM    +TP +   +  L++    AG  +
Sbjct: 353 -LRLTEKTFAVLMPGLCDDEGKAAEARKAVADMAERRLTPKDKSVFLRLVSTLCKAGDFD 411

Query: 416 QAMHLFEEMLQ 426
            A+ + ++  Q
Sbjct: 412 GALEVHKKSGQ 422



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/201 (18%), Positives = 89/201 (44%), Gaps = 5/201 (2%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           FG  + + SA+R +   K H  +P++    T+++     GD   +R +++++    +  N
Sbjct: 262 FGLCKKMESAVRVFGDMKGHGVAPDVTTYNTLLNAWVRKGDLESARKVFDEMPEAGLERN 321

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
              +N ++   V+A+ ++  L ++  M + G+     ++ +L+   C   +   A E   
Sbjct: 322 SISYNVMIKGYVDANKVEEALGLFTEMGEKGLRLTEKTFAVLMPGLC--DDEGKAAEARK 379

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV-KEDMLSAGVTPNTITWSSLINA 407
            V  +  + +   D   +  +V     A  +  AL+V K+      V  +   +  L+ +
Sbjct: 380 AVADMAERRLTPKDKSVFLRLVSTLCKAGDFDGALEVHKKSGQFKHVLVDPRQYGVLMES 439

Query: 408 CANAGLVEQAMHLFEEMLQAG 428
               G  + A+ + +E+L+ G
Sbjct: 440 LCAGGKCDGAVQVLDELLEKG 460



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 7/165 (4%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASY 327
           G+  K+   +  L  + V  +   FNSL+  +A +  L    E+   M + GV  D  S+
Sbjct: 486 GNTDKAETFFRQLMKKGVD-DKSAFNSLIRGHAKEGALDAAKEILAIMTRRGVPTDPHSH 544

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            +L+ +         A+     +  +   G L       S +  +F D +  Q A +V +
Sbjct: 545 ALLIDSFLKKNEPADAKTA---LDSMMEHGHLPRPALFQSVMAALFNDGRV-QTASRVMK 600

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
            M+  G+T N    + ++ A    G VE+A+     M++ GC P+
Sbjct: 601 SMIEKGITENMDMANKIVEALFMRGHVEEAIGRVNLMVENGCMPD 645


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 114/294 (38%), Gaps = 55/294 (18%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           + ED+    V L+  VF ++M+      DL      +  MQK G+ AD  +Y  L+   C
Sbjct: 342 VVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLC 401

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            AG    A+ +  E   +E KG L +D  TY+ ++  +        A  V   M+   VT
Sbjct: 402 RAGELKEAERVLQE---MEDKG-LDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVT 457

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++L +     G V  A  L  EM   G E N    N L+    +A   ++A R 
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR- 516

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
                   T + + E                                         KP  
Sbjct: 517 --------TMIDMDEA--------------------------------------GLKPDV 530

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            TY  ++ A C   +  R  +L+ EM   G+ P  +++ +L++    SG VEG 
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGG 584



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 9/184 (4%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G C  G   ++  ++  +  + VT N+  + +L +      D+    E+   M   G+  
Sbjct: 434 GYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLEL 493

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           ++ +YN L+   C AGN  L Q +   +   EA   LK DV+TY+TI+     +K    A
Sbjct: 494 NIFTYNSLINGLCKAGN--LEQAMRTMIDMDEAG--LKPDVYTYTTIIGALCQSKELDRA 549

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL-Q 441
             + ++ML  G+ P  +T++ L+N    +G VE    L E ML+    PN+   N L+ Q
Sbjct: 550 HSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609

Query: 442 ACVE 445
            C+E
Sbjct: 610 YCIE 613



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 11/215 (5%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           +PN+     + D  G+C  GD   +  +  ++ S+ + LNI+ +NSL+N    A +L+  
Sbjct: 457 TPNVVTYTALSD--GLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQA 514

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +    +M + G+  D+ +Y  ++ A C +     A  +  E+     KG+ K  + TY+ 
Sbjct: 515 MRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLD---KGI-KPTIVTYNV 570

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F  +   +   ++ E ML   + PNT T++SL+        ++    +++ ML   
Sbjct: 571 LMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQE 630

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
             PN    NIL++   +A     A   F S  + K
Sbjct: 631 VVPNENTYNILIKGHCKARNMKEAL-YFHSEMIEK 664



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 107/275 (38%), Gaps = 44/275 (16%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGE-----------------------------VKHLEAK 356
           SYNILLKA C AG    A +++ E                             +  + A+
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G L+L+   Y++++ +  D      A++V EDM+  GV  +   ++++++     G +  
Sbjct: 315 G-LELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAA 373

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476
           A + F+EM + G   +      L+     A +   A R+ +            ED   + 
Sbjct: 374 ARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEM----------EDKGLDV 423

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKA 534
           D ++     D              H     KR +  P   TY  L    C   D      
Sbjct: 424 DAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVT--PNVVTYTALSDGLCKQGDVCAANE 481

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L++EM + GL  N  ++  LI+    +GN+E A++
Sbjct: 482 LLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR 516



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 14/177 (7%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++Y   TII       +  ++ ++ +++  + +   I  +N LMN    +  ++    +
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF----TYS 367
            + M +  +  +  +YN L+K  C+  N     EIY        KG+L  +V     TY+
Sbjct: 588 LEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIY--------KGMLSQEVVPNENTYN 639

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            ++K    A+  + AL    +M+  G      ++++LI          +A  LFE+M
Sbjct: 640 ILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696


>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 658

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEV 311
           PN +I   +ID  G  G   ++   +  +  +    ++  +NSL+  +  A  +   L++
Sbjct: 357 PNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDL 416

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            K MQ+   +  + +YNI+L A    G     +E+   +  +  KG L  +V TY+T+V 
Sbjct: 417 LKQMQERECVPSLHTYNIILNAL---GWHNRWKEMALLLDEMRFKG-LDPNVVTYTTLVD 472

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +  +K ++ A +  + M S G+ P+T  + +L N+ A  GL EQAM +F+ M + G E 
Sbjct: 473 SYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDGVEL 532

Query: 432 NSQCCNILLQACVEACQFDRAFRLF 456
           N    N+L+ A   A ++  AF +F
Sbjct: 533 NLSMLNLLINAFGVAGKYVEAFSVF 557



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 135/314 (42%), Gaps = 59/314 (18%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE-VY 312
           P++    ++I+   +      + A Y +++S++  +N+   N+L++  A+  K  LE V 
Sbjct: 217 PDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLS--AYTRKSLLEQVE 274

Query: 313 KNMQKL---GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           K MQ     G+     SY +L+ A   AG    A+  +  +K          + F YS +
Sbjct: 275 KLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVENVPA----NAFIYSRL 330

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  + +A+ W   +++ +DM ++ + PN   ++ LI+     G + QAM  F +M + G 
Sbjct: 331 MVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGF 390

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +P+    N L++A   A     A                        D +  M+ ++   
Sbjct: 391 KPDVVTWNSLIEAHCRAGLITEAL-----------------------DLLKQMQERE--- 424

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN 547
                  VP+ H               TYNI++ A      +  +  L++EMR  GL PN
Sbjct: 425 ------CVPSLH---------------TYNIILNALGWHNRWKEMALLLDEMRFKGLDPN 463

Query: 548 HISWTILIDACGGS 561
            +++T L+D+ G S
Sbjct: 464 VVTYTTLVDSYGTS 477



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 41/191 (21%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           PN+    T++D  G    Y ++    + ++SQ +  +  V+ +L N  A     +  +EV
Sbjct: 462 PNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEV 521

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +K+M+K GV  +++  N+L+ A  +AG            K++EA       VF Y     
Sbjct: 522 FKSMEKDGVELNLSMLNLLINAFGVAG------------KYVEA-----FSVFDY----- 559

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                            +L  G++P+ +T+++L+ A   A  ++Q   ++E+M++AGC P
Sbjct: 560 -----------------ILEVGMSPDVVTYTTLMKALIKAEQLDQVPDVYEQMVRAGCTP 602

Query: 432 NSQCCNILLQA 442
           +    ++L  A
Sbjct: 603 DDMAKDMLRSA 613



 Score = 39.3 bits (90), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 384 KVKEDML------SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
           +V+E ML        GV+P  + +++++  CA    +E A+ L  +M  +G +P++    
Sbjct: 93  RVEEAMLLFDQLKQLGVSPGPMAYNAIVGTCAREDRLETALELMNQMRGSGFQPDNVNYT 152

Query: 438 ILLQACVE 445
           ++ QAC +
Sbjct: 153 LVFQACAK 160


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 117/248 (47%), Gaps = 9/248 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  +G+   L  A+R +   ++   SP+     T++D+    G +  +  +Y+ 
Sbjct: 103 VTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQK 162

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++      + + ++ +++    A  +   L++++ M + G    + +YNI++     +GN
Sbjct: 163 MQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGN 222

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            V+A ++Y +++          D  TYS +++V       Q A  +  +M  AG  P+  
Sbjct: 223 YVMAMKLYNDMQ----DAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAP 278

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL---F 456
            +  +++    A   E+A+  +++ML +G  PN Q  N LL + +   QFD AF +    
Sbjct: 279 IYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETM 338

Query: 457 RSWTLSKT 464
           ++W L  T
Sbjct: 339 KAWGLVPT 346



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 6/238 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  V    K     +A+  Y   ++    P+ +    II   G  G   ++  ++E+
Sbjct: 138 VTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEE 197

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +    ++  +N ++++ A    + +  ++Y +MQ  G   D  +Y+I+++     G+
Sbjct: 198 MVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGH 257

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ ++ E   +E  G +  D   Y  +V ++  A+  + AL+  + ML +G+TPN  
Sbjct: 258 LQEAELMFNE---MEQAGWVP-DAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQ 313

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             +SL+ +       + A  + E M   G  P  Q   ILL +C  + Q  +   L  
Sbjct: 314 ISNSLLGSYLRMQQFDLAFGVIETMKAWGLVPTLQTHTILLSSCTASAQHHQVVNLMH 371



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 140/328 (42%), Gaps = 36/328 (10%)

Query: 240 ALRAYDASKKHLSSPNMYICR--TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           AL+ +D +K+     +  +C   T+I + G   ++     + +++R +     +  +N L
Sbjct: 50  ALKFFDWAKEQEGYKHD-VCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRL 108

Query: 298 MNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++    A+ L   + ++  MQ+ G   D  +Y  L+     AG    A ++Y +++    
Sbjct: 109 IHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQ---- 164

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +   + D FTYS I+     A     ALK+ E+M+  G  P+ +T++ +I+  A +G   
Sbjct: 165 QAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYV 224

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR-----SWTLSKTQVALGE 470
            AM L+ +M  AG  P+    +I+++   +      A  +F       W        +  
Sbjct: 225 MAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMV 284

Query: 471 DYDG---NTDRISNMEHKDKQSITNTPNF-VPNSHYSS------FD---------KRFSF 511
           D  G   N +R      K   S   TPN  + NS   S      FD         K +  
Sbjct: 285 DMWGKARNAERALEWYQKMLDSGL-TPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGL 343

Query: 512 KPTTTTYNILMKACC--TDYYRVKALMN 537
            PT  T+ IL+ +C     +++V  LM+
Sbjct: 344 VPTLQTHTILLSSCTASAQHHQVVNLMH 371



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/230 (20%), Positives = 109/230 (47%), Gaps = 10/230 (4%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           G+ R+  +  R     ++    P +     +I   G      ++  I+  ++ +  + + 
Sbjct: 78  GRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDR 137

Query: 292 YVFNSLMNVNA----HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
             + +L+++++    HD    +++Y+ MQ+ G   D  +Y++++     AG    A +++
Sbjct: 138 VTYCTLVDLHSKAGFHD--NAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLF 195

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            E+     +      + TY+ I+ + A +  + MA+K+  DM  AG  P+ +T+S ++  
Sbjct: 196 EEM----VERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEV 251

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
               G +++A  +F EM QAG  P++    +++    +A   +RA   ++
Sbjct: 252 LGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERALEWYQ 301



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 27/201 (13%)

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G   +  T++++I     A   E    L +EM + GCEP     N L+ A   A     A
Sbjct: 62  GYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEA 121

Query: 453 FRLFRSW-------------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
            R+F                TL       G  +D   D    M+    Q  T T + + +
Sbjct: 122 MRIFYQMQEEGCSPDRVTYCTLVDLHSKAG-FHDNAMDMYQKMQQAGFQPDTFTYSVIIH 180

Query: 500 -----SHYSSFDKRF------SFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSP 546
                   S   K F       F P+  TYNI+  ++A   +Y     L N+M+  G  P
Sbjct: 181 CLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHP 240

Query: 547 NHISWTILIDACGGSGNVEGA 567
           + ++++I+++  G  G+++ A
Sbjct: 241 DRVTYSIMMEVLGQIGHLQEA 261


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 16/260 (6%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M +LG + ++ SYNILLK  C    +  A E+   +   +  G    DV +Y+T++
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMP--DDGGDCPPDVVSYTTVI 206

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F        A     +ML  G+ PN +T+SS+I A   A  +++AM +   M++ G  
Sbjct: 207 NGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVM 266

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN +  N ++     + Q   A    +               DG    +           
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKM-----------HSDGVEPDVVTYNSLMDYLC 315

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK--ALMNEMRTVGLSPNH 548
            N         + S  KR   KP  TTY  L++   T    V+   L++ M   G+ PNH
Sbjct: 316 KNGRCTEARKMFDSMTKR-GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 374

Query: 549 ISWTILIDACGGSGNVEGAL 568
             ++ILI A    G V+ A+
Sbjct: 375 YVFSILICAYAKQGKVDQAM 394



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 132/304 (43%), Gaps = 30/304 (9%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD  K+   Y ++  + +  N+  ++S++     A  +   +EV  +M K GVM +  +Y
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N ++   C +G     +E  G +K + + GV + DV TY++++           A K+ +
Sbjct: 273 NSIVHGYCSSGQ---PKEAIGFLKKMHSDGV-EPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            M   G+ P   T+ +L+   A  G + +   L + M++ G  PN    +IL+ A  +  
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 448 QFDRAFRLF---RSWTLSKTQVALGEDYD--GNTDRISNMEHKDKQSITNTPNFVPNSHY 502
           + D+A  +F   R   L+   V  G        + R+ +     +Q I            
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI------------ 436

Query: 503 SSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560
              D+R S  P    YN L+ + C    + + K L+ EM   G+  + I +  +ID+   
Sbjct: 437 ---DERLS--PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 561 SGNV 564
            G V
Sbjct: 492 EGRV 495



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 116/253 (45%), Gaps = 18/253 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           IL C + ++ GK   +  A+  +   ++   +P+     T+I +    G    +   +E 
Sbjct: 379 ILICAYAKQ-GK---VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQ 434

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF------TLEVYKNMQKLGVMADMASYNILLKACC 335
           +  + ++    V+NSL+    H L          E+   M   G+  D   +N ++ + C
Sbjct: 435 MIDERLSPGNIVYNSLI----HSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G  + +++++     L  +  +K D+ TYST++  +  A     A K+   M+S G+ 
Sbjct: 491 KEGRVIESEKLF----DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +T+++LIN       +E A+ LF EM  +G  P+    NI+LQ   +  +   A  L
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606

Query: 456 FRSWTLSKTQVAL 468
           +   T S TQ+ L
Sbjct: 607 YVGITESGTQLEL 619



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 152/378 (40%), Gaps = 31/378 (8%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P   + +   +  F K+ DL  A   Y         PN+    +II          K+  
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +   +    V  N   +NS+++   ++   K  +   K M   GV  D+ +YN L+   C
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    A++++  +     K  LK ++ TY T+++ +A          + + M+  G+ 
Sbjct: 316 KNGRCTEARKMFDSM----TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 371

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN   +S LI A A  G V+QAM +F +M Q G  P++     ++    ++ + + A R 
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 456 FRSWT---LSKTQVA---------LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
           F       LS   +          + + +D   + I  M  +     T   N + +SH  
Sbjct: 432 FEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 504 S---------FD--KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHIS 550
                     FD   R   KP   TY+ L+   C      +A  L+  M +VG+ P+ ++
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVT 551

Query: 551 WTILIDACGGSGNVEGAL 568
           +  LI+       +E AL
Sbjct: 552 YNTLINGYCKISRMEDAL 569



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 110/229 (48%), Gaps = 6/229 (2%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A+R ++       SP   +  ++I    I   + K++ +  ++  + + L+   FNS+++
Sbjct: 428 AMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID 487

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
            +  + +   + +++  M ++GV  D+ +Y+ L+   CLAG    A ++   +  +    
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG--- 544

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            +K D  TY+T++  +      + AL +  +M S+GV+P+ IT++ ++           A
Sbjct: 545 -MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAA 603

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
             L+  + ++G +      NI+L    +    D A R+F++  L+  Q+
Sbjct: 604 KELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/330 (20%), Positives = 147/330 (44%), Gaps = 23/330 (6%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           ++G++D  + V  K+ + G+ P  +  G+   +L   C+    SG VE  +   E + + 
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL---CK----SGRVEDAMRYFEQMIDE 438

Query: 185 RLPVKELDEEFRIVQLCV-NKPD------VNLAIRYACIVPRADILFCNFVREFGKKRDL 237
           RL    +     I  LC+ +K D      + +  R  C+     I F + +    K+  +
Sbjct: 439 RLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL---DTIFFNSIIDSHCKEGRV 495

Query: 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           + + + +D   +    P++    T+ID   + G   ++  +   + S  +  +   +N+L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 298 MN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           +N       ++  L +++ M+  GV  D+ +YNI+L+       T  A+E+Y  +     
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI----T 611

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +   +L++ TY+ I+           AL++ +++    +   T T++ +I A    G  +
Sbjct: 612 ESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRND 671

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
           +A  LF  +   G  P+ +  +++ +  +E
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIE 701


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 136/331 (41%), Gaps = 72/331 (21%)

Query: 254 PNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--------VNAH 303
           P   I  T+I+  G C   D   +  I+E ++S+++  +   +N+L+N          A 
Sbjct: 367 PTTVIYNTLIN--GYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAE 424

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           DL         M+K GV   + ++N L+ A   AG     ++ +  +  ++ KG+ K DV
Sbjct: 425 DLVM------EMEKSGVDPSVETFNTLIDAYGTAGQL---EKCFTVLSDMQQKGI-KSDV 474

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            ++ ++VK F        A+ + +DM+   V PN   ++S+I+A   +G  EQA  L E+
Sbjct: 475 ISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEK 534

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M  +G   +    N+LL+    + Q D A  L   +TL                      
Sbjct: 535 MKNSGVSASIVTYNLLLKGLCRSSQIDEAEELI--YTL---------------------- 570

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRT 541
                                  +    +P   +YN ++ ACC   D  +   L+ EM  
Sbjct: 571 -----------------------RNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 607

Query: 542 VGLSPNHISWTILIDACGGSGNVEGALQCRF 572
            G+ P   ++  L+ A   +G V   ++C +
Sbjct: 608 YGIRPTLRTYHTLVSALASAGRVHD-MECLY 637



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 7/183 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   ++ AI +D+  ++V  N  V+NS+++  + + D +    + + M+  GV A + +Y
Sbjct: 488 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTY 547

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N+LLK  C +     A+E+   +  L  +G L+ DV +Y+TI+    +      AL++ +
Sbjct: 548 NLLLKGLCRSSQIDEAEEL---IYTLRNQG-LRPDVVSYNTIISACCNKGDTDKALELLQ 603

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M   G+ P   T+ +L++A A+AG V     L+++ML    EP+S    I++ A V  C
Sbjct: 604 EMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVR-C 662

Query: 448 QFD 450
           + D
Sbjct: 663 END 665



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 137/343 (39%), Gaps = 37/343 (10%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++  C  +++     G +   RA +  L +     + + +N ++   V A DL   L +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 312 YKNMQKL--GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            + M +       D  SYN+++     +G    A +++ E+  +   GV+  +  TY+T+
Sbjct: 180 VRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDM---GVVP-NWITYNTM 235

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         +   ++++ ML  G  PN +T++ L++    AG +++   L +EM     
Sbjct: 236 IDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSM 295

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY----------DGNTDR- 478
            P+    +IL        +      LF      K  V LG             DG   + 
Sbjct: 296 FPDGFTYSILFDGLTRTGESRTMLSLFAESL--KKGVMLGAYTCSILLNGLCKDGKVAKA 353

Query: 479 ---ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF-----------KPTTTTYNILMKA 524
              +  + H      T   N + N +    D R +F           +P   TYN L+  
Sbjct: 354 EQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALING 413

Query: 525 CCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            C      KA  L+ EM   G+ P+  ++  LIDA G +G +E
Sbjct: 414 LCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLE 456



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/341 (19%), Positives = 148/341 (43%), Gaps = 35/341 (10%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           +VP   +++   +  + + RDL  A   ++  K     P+      +I+  G+C   M +
Sbjct: 365 LVPTT-VIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN--GLCKLEMVT 421

Query: 276 RA--IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +A  +  ++    V  ++  FN+L++    A  L+    V  +MQ+ G+ +D+ S+  ++
Sbjct: 422 KAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVV 481

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           KA C  G    A  I  ++ + +    +  +   Y++I+  + ++   + A  + E M +
Sbjct: 482 KAFCKNGKIPEAVAILDDMIYKD----VAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKN 537

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           +GV+ + +T++ L+     +  +++A  L   +   G  P+    N ++ AC      D+
Sbjct: 538 SGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDK 597

Query: 452 AFRLFRSWTLSKTQVALGEDYD-----GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
           A  L +       +  L   +       +  R+ +ME   +Q +                
Sbjct: 598 ALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHK-------------- 643

Query: 507 KRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLS 545
              + +P+++ Y I++ A   C +  +V +L  EM   G++
Sbjct: 644 ---NVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIA 681



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 91/447 (20%), Positives = 167/447 (37%), Gaps = 81/447 (18%)

Query: 196 RIVQLCVNKPDVNLAIRYACIVPRAD-----------ILFCNFVREFGKKRDLVSALRAY 244
           ++VQ CV   D+++A+     + R++           ++     R  GK  D   AL+ +
Sbjct: 162 KVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRS-GKGSD---ALKVF 217

Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNA 302
           D        PN     T+ID     GD      + + +       NI  +N L++    A
Sbjct: 218 DEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRA 277

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
             +  T  +   M    +  D  +Y+IL       G +     ++ E      KGV+ L 
Sbjct: 278 GRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLK---KGVM-LG 333

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
            +T S ++           A +V E ++  G+ P T+ +++LIN       +  A  +FE
Sbjct: 334 AYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFE 393

Query: 423 -----------------------------------EMLQAGCEPNSQCCNILLQACVEAC 447
                                              EM ++G +P+ +  N L+ A   A 
Sbjct: 394 QMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAG 453

Query: 448 QFDRAFRLF--------RSWTLSKTQVALGEDYDGNTDR----ISNMEHKDKQSITNTPN 495
           Q ++ F +         +S  +S   V      +G        + +M +KD        N
Sbjct: 454 QLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYN 513

Query: 496 FVPNSHYSSFDKRFSF-----------KPTTTTYNILMKACC--TDYYRVKALMNEMRTV 542
            + +++  S D   +F             +  TYN+L+K  C  +     + L+  +R  
Sbjct: 514 SIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQ 573

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
           GL P+ +S+  +I AC   G+ + AL+
Sbjct: 574 GLRPDVVSYNTIISACCNKGDTDKALE 600


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 23/249 (9%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           I   C+    ++ F  F + F         LR  DA        N++    +I  C + G
Sbjct: 286 INSLCVSGNVELAFALFAQMF---------LRGCDA--------NIHTFTPLIKGCFMRG 328

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
              ++  +++ +       N+  +N+L++   +   L+  L+V   MQ+ G + ++ +Y+
Sbjct: 329 KLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYS 388

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           IL+     +G+ V A E +     + + G  + +V TY+ +V V      +  A  + E 
Sbjct: 389 ILIDGFAKSGDLVGASETW---NRMISHGC-RPNVVTYTCMVDVLCKNSMFDQANSLVEK 444

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M   G TPNTIT+++ I      G VE AM L E M   GC PN    N LL A     +
Sbjct: 445 MTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNK 504

Query: 449 FDRAFRLFR 457
           ++ AF LF+
Sbjct: 505 YEEAFGLFQ 513



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 126/307 (41%), Gaps = 77/307 (25%)

Query: 291 IYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           + ++N L++    + KF +   +Y NM+K G++ ++ +YNILLKA C       A +++ 
Sbjct: 144 VRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFV 203

Query: 349 EVKH--------------------------LEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           E+ +                           E  G  K  V  Y+ ++         ++A
Sbjct: 204 EMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVA 263

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +K+  +M+  GV PN +++S +IN+   +G VE A  LF +M   GC+ N      L++ 
Sbjct: 264 IKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKG 323

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
           C     F R  +L+ +  L K  +  G                                 
Sbjct: 324 C-----FMRG-KLYEALDLWKLMIQDG--------------------------------- 344

Query: 503 SSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGG 560
                    +P    YN L+   C++    +AL   ++M+  G  PN  +++ILID    
Sbjct: 345 --------CEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAK 396

Query: 561 SGNVEGA 567
           SG++ GA
Sbjct: 397 SGDLVGA 403



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 100/202 (49%), Gaps = 10/202 (4%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYEDLRS 284
            +  F K  DLV A   ++    H   PN+     ++DV  +C + M  ++ ++ E +  
Sbjct: 390 LIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDV--LCKNSMFDQANSLVEKMTL 447

Query: 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           +  T N   FN+ +        +++ +++ + MQ  G + ++ +YN LL A         
Sbjct: 448 EGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKY-- 505

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
            +E +G  + +EA+  L+ ++ TY+T++  F+ A     AL++    L  G  P++IT++
Sbjct: 506 -EEAFGLFQEIEARN-LQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYN 563

Query: 403 SLINACANAGLVEQAMHLFEEM 424
           ++I+A    G V+ A  L E +
Sbjct: 564 TMIHAYCKQGKVKIAAQLVERV 585



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/211 (17%), Positives = 97/211 (45%), Gaps = 9/211 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I F  F++       +  A++  +  + H   PN+     ++D       Y ++  ++++
Sbjct: 455 ITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQE 514

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + ++N+  N+  +N+++     A  +   L+++      G   D  +YN ++ A C  G 
Sbjct: 515 IEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGK 574

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM--ALKVKEDMLSAGVTPN 397
             +A ++   V  ++       D+ TY+++  ++    W  +  A+   +  ++ G+ PN
Sbjct: 575 VKIAAQLVERVSSMKE---WHPDIITYTSL--IWGACNWMNIEEAMAFLDKAINQGICPN 629

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAG 428
             TW++L+    ++      +H+ +++L+ G
Sbjct: 630 FATWNALVRCFFDSLGHMGPIHILDDILRKG 660



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 10/212 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P++ +   +ID  G+C +     AI    ++    V  N+  ++ ++N    + +++   
Sbjct: 242 PSVPVYNALID--GMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAF 299

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            ++  M   G  A++ ++  L+K C + G    A +++     L  +   + +V  Y+T+
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLW----KLMIQDGCEPNVVAYNTL 355

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + AL+V + M  +G  PN  T+S LI+  A +G +  A   +  M+  GC
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
            PN      ++    +   FD+A  L    TL
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTL 447



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 95/208 (45%), Gaps = 6/208 (2%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           L  AL+  D  ++    PN+     +ID     GD + +   +  + S     N+  +  
Sbjct: 365 LEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTC 424

Query: 297 LMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           +++V   +  F     + + M   G   +  ++N  +K  C  G    A ++   ++ ++
Sbjct: 425 MVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKL---LERMQ 481

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
             G L  ++ TY+ ++        ++ A  + +++ +  + PN +T+++++   + AG++
Sbjct: 482 GHGCLP-NITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMM 540

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            +A+ LF + L  G  P+S   N ++ A
Sbjct: 541 GEALQLFGKALVRGTAPDSITYNTMIHA 568


>gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 918

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 108/223 (48%), Gaps = 6/223 (2%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           +KR +  A+   D        PN +   T++      GD  K+   +  LR++ + +++Y
Sbjct: 601 EKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFSVLRNEGLEIDVY 660

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            + +L+     +  ++  L V K M    +  +   YNIL+      G+   A ++   +
Sbjct: 661 TYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADL---M 717

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + +  +GVL  D+ TY++ V     A   Q A ++ ++M + G+ PN  T+++LIN  A 
Sbjct: 718 QQMRKEGVLP-DIHTYTSFVNACCKAGDMQKATEIIQEMEAFGIKPNLKTYTTLINGWAR 776

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           A + E+A+  FEEM  A  +P+    + L+ + +    F +++
Sbjct: 777 ASMPEKALSCFEEMKLAELKPDKAAYHCLMTSLLSRATFAQSY 819



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 109/243 (44%), Gaps = 8/243 (3%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   +  F +  ++  AL  +D  ++    P ++    +I          K+ AI + + 
Sbjct: 557 FLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMN 616

Query: 284 SQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              V  N + + +LM   A   D +   + +  ++  G+  D+ +Y  LLK+CC +G   
Sbjct: 617 VAGVGPNEHTYTTLMQGYASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRM- 675

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AKWWQMALKVKEDMLSAGVTPNTIT 400
             Q      K + AK + + + F Y+ ++  +A     W+ A  + + M   GV P+  T
Sbjct: 676 --QSALAVTKEMSAKNIPR-NTFVYNILIDGWARRGDVWEAA-DLMQQMRKEGVLPDIHT 731

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++S +NAC  AG +++A  + +EM   G +PN +    L+     A   ++A   F    
Sbjct: 732 YTSFVNACCKAGDMQKATEIIQEMEAFGIKPNLKTYTTLINGWARASMPEKALSCFEEMK 791

Query: 461 LSK 463
           L++
Sbjct: 792 LAE 794



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/383 (20%), Positives = 149/383 (38%), Gaps = 40/383 (10%)

Query: 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254
           F  ++ C   P V   I Y C++        N   + GK   +  AL+     K      
Sbjct: 437 FDRLKECGFSPSV---ISYGCLI--------NLYTKIGK---VSKALQISKMMKMSGIKH 482

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVY 312
           NM     +I+      D+  + +++ED     +  ++ ++N+++       ++   + + 
Sbjct: 483 NMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMSNMDRAICMV 542

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           K MQK        ++  ++     AG    A EI+  ++     G +   V TY+ ++  
Sbjct: 543 KQMQKERYRPTTRTFLPIIHGFARAGEMRRALEIFDMMRR---SGCIPT-VHTYNALILG 598

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
             + +    A+ + + M  AGV PN  T+++L+   A+ G  E+A   F  +   G E +
Sbjct: 599 LVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFSVLRNEGLEID 658

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQS 489
                 LL++C ++ +   A  + +  +   + +         DG   R    E  D   
Sbjct: 659 VYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQ 718

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN 547
                  +P+ H               TY   + ACC   D  +   ++ EM   G+ PN
Sbjct: 719 QMRKEGVLPDIH---------------TYTSFVNACCKAGDMQKATEIIQEMEAFGIKPN 763

Query: 548 HISWTILIDACGGSGNVEGALQC 570
             ++T LI+    +   E AL C
Sbjct: 764 LKTYTTLINGWARASMPEKALSC 786



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 127/311 (40%), Gaps = 20/311 (6%)

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNM 315
           I  T++D   + G+  K   +++ L+    + ++  +  L+N+     K +  L++ K M
Sbjct: 416 IYHTMMDGYTMIGNEEKCLIVFDRLKECGFSPSVISYGCLINLYTKIGKVSKALQISKMM 475

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           +  G+  +M +Y++L+       +   A  ++ +      K  LK DV  Y+ I+  F  
Sbjct: 476 KMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDF----TKDGLKPDVVLYNNIITAFCG 531

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
                 A+ + + M      P T T+  +I+  A AG + +A+ +F+ M ++GC P    
Sbjct: 532 MSNMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHT 591

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
            N L+   VE  +  +A  +     ++           G  +       +   S+ +T  
Sbjct: 592 YNALILGLVEKRKMAKAVAILDQMNVAGV---------GPNEHTYTTLMQGYASLGDTEK 642

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTI 553
                 Y S  +    +    TY  L+K+CC       AL    EM    +  N   + I
Sbjct: 643 AF---QYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNI 699

Query: 554 LIDACGGSGNV 564
           LID     G+V
Sbjct: 700 LIDGWARRGDV 710



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/353 (19%), Positives = 136/353 (38%), Gaps = 57/353 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDYMKSRAIYE 280
           + +   V  F K     +A   +  +K+ L S N     +II   C  C +  ++ A+  
Sbjct: 345 VTYSIIVGGFAKMGKADAADHWFKEAKEKLPSLNAVTYGSIIYAHCQTC-NMDRAEALVR 403

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++  Q +   I +++++M+      + +  L V+  +++ G    + SY  L+      G
Sbjct: 404 EMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFSPSVISYGCLINLYTKIG 463

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A +I    K ++  G+ K ++ TYS ++  F   K W  A  V ED    G+ P+ 
Sbjct: 464 KVSKALQI---SKMMKMSGI-KHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDV 519

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           + ++++I A      +++A+ + ++M +    P ++    ++     A +  RA  +F  
Sbjct: 520 VLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGEMRRALEIF-- 577

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
                                                           +R    PT  TY
Sbjct: 578 ---------------------------------------------DMMRRSGCIPTVHTY 592

Query: 519 NILMKACCTDYYRVK--ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           N L+          K  A++++M   G+ PN  ++T L+      G+ E A Q
Sbjct: 593 NALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQ 645



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           Y +++K     G+   A++ +   + ++A+G+ +     YS+++  +A  +  + AL   
Sbjct: 277 YGLMVKYYARRGDMHHARQTF---ESMQARGI-EPSSHVYSSLIHAYAVGRDMEEALHCV 332

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
             M   G+    +T+S ++   A  G  + A H F+E  +     N+     ++ A  + 
Sbjct: 333 RKMKEEGIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKEKLPSLNAVTYGSIIYAHCQT 392

Query: 447 CQFDRAFRLFR 457
           C  DRA  L R
Sbjct: 393 CNMDRAEALVR 403


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 125/291 (42%), Gaps = 32/291 (10%)

Query: 289 LNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           LN+ +FN+++   +    L    E+Y+ M   G   D  +Y+IL+   C  G    A  +
Sbjct: 309 LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRL 368

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
              ++ +E KG    +V TY+ ++  F     W     + E+M + G+T N+  ++ +I 
Sbjct: 369 ---LREMEKKGFAP-NVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIY 424

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           A    G +++AM L +EM   GC P+    N ++       Q + A  +F +  L +  V
Sbjct: 425 ALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFEN-LLEEGVV 483

Query: 467 ALGEDYDG------NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
           A G  Y+          R  +     K+ I          H  S D          +YN 
Sbjct: 484 ANGITYNTIIHALLRDGRWQDAVRLAKEMIL---------HGCSLD--------VVSYNG 526

Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L+KA C D    R   L+ EM   G+ PN++S+ ILI        V  AL+
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALE 577



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 108/215 (50%), Gaps = 9/215 (4%)

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           SA+R     +K   +PN+     ++      G +  +RA+ E++ ++ +TLN   +N ++
Sbjct: 364 SAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMI 423

Query: 299 NVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                D +    + + + M+  G   D+ SYN ++   C   N    +E     ++L  +
Sbjct: 424 YALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLC---NNEQMEEAEHMFENLLEE 480

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           GV+  +  TY+TI+        WQ A+++ ++M+  G + + ++++ LI A    G V++
Sbjct: 481 GVVA-NGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDR 539

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           ++ L EEM + G +PN+   NIL+    E C+  R
Sbjct: 540 SLVLLEEMAEKGIKPNNVSYNILIS---ELCKERR 571



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 141/328 (42%), Gaps = 40/328 (12%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           N+ +  T+I  C   G   ++  +YE +  +    + + ++ LM+       +   + + 
Sbjct: 310 NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLL 369

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M+K G   ++ +Y I+L + C  G   +  +    ++ + AKG L L+   Y+ ++  
Sbjct: 370 REMEKKGFAPNVVTYTIVLHSFCKNG---MWDDTRALLEEMSAKG-LTLNSQGYNGMIYA 425

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                    A+ + ++M S G  P+  +++++I    N   +E+A H+FE +L+ G   N
Sbjct: 426 LCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVAN 485

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTL--------SKTQVALGEDYDGNTDR-ISNME 483
               N ++ A +   ++  A RL +   L        S   +      DGN DR +  +E
Sbjct: 486 GITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLE 545

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK---ALMNEMR 540
              ++ I                     KP   +YNIL+   C +  RV+    L  +M 
Sbjct: 546 EMAEKGI---------------------KPNNVSYNILISELCKE-RRVRDALELSKQML 583

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGAL 568
             GL+P+ +++  LI+     G +  AL
Sbjct: 584 NQGLAPDIVTYNTLINGLCKMGWMHAAL 611



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 88/173 (50%), Gaps = 14/173 (8%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILL 331
           ++  ++E+L  + V  N   +N++++    D ++   + + K M   G   D+ SYN L+
Sbjct: 469 EAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLI 528

Query: 332 KACCLAGNT----VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           KA C  GN     VL +E+        A+  +K +  +Y+ ++      +  + AL++ +
Sbjct: 529 KAMCKDGNVDRSLVLLEEM--------AEKGIKPNNVSYNILISELCKERRVRDALELSK 580

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            ML+ G+ P+ +T+++LIN     G +  A++L E++      P+    NIL+
Sbjct: 581 QMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 633



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASY 327
           G +  +  + +++     +L++  +N L+     D  +  +L + + M + G+  +  SY
Sbjct: 500 GRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSY 559

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           NIL+   C       A E+    K +  +G L  D+ TY+T++       W   AL + E
Sbjct: 560 NILISELCKERRVRDALELS---KQMLNQG-LAPDIVTYNTLINGLCKMGWMHAALNLLE 615

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
            + +  V P+ IT++ LI+      L++ A  L    + A C
Sbjct: 616 KLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVC 657



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 105/283 (37%), Gaps = 32/283 (11%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM-QKLGVMADMASYNILLKACC 335
            +    RS NV L++     L   + H     L +Y+ M  +  V     ++ +  +A C
Sbjct: 134 GVQPSFRSYNVVLSV-----LARADCH--ADALALYRRMVHRDRVPPTTFTFGVAARALC 186

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    A E    ++ +   G +  D   Y T++    D      A  +  +ML  G  
Sbjct: 187 RLGR---ANEALALLRGMARHGCVP-DAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCA 242

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            +  T+  ++      G V +A  L + M+  GC P       LLQ      Q D A  +
Sbjct: 243 ADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAM 302

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
                + +  V L     G    ++  +  +   +  T                  +P  
Sbjct: 303 LGR--VPELNVVLFNTVIGGC--LAEGKLAEATELYETMGLK------------GCQPDA 346

Query: 516 TTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILI 555
            TY+ILM   C    R+ +   L+ EM   G +PN +++TI++
Sbjct: 347 HTYSILMHGLCK-LGRISSAVRLLREMEKKGFAPNVVTYTIVL 388


>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 845

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 109/235 (46%), Gaps = 7/235 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  +    K   L  A+  Y   +    SP+ +    II+  G  G    +  ++ +
Sbjct: 420 VTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCE 479

Query: 282 LRSQNVTLNIYVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q  T N+  FN +  ++  A + +  L++Y++MQ  G   D  +Y+I+++   + G+
Sbjct: 480 MVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVME---VLGH 536

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
               +E  G    ++ K  +  D   Y  +V ++  A   + A +  ++ML AG+ PN  
Sbjct: 537 CGFLEEAEGVFAEMQRKNWVP-DEPVYGLLVDLWGKAGNVEKAWQWYQEMLHAGLRPNVP 595

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-CQFDRAF 453
           T +SL++       + +A +L + ML  G  P+ Q   +LL  C +A   FD  F
Sbjct: 596 TCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDMGF 650



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 120/283 (42%), Gaps = 47/283 (16%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   V   G+ +   +  R  D   K    PN      +I   G      ++  +++ ++
Sbjct: 352 YTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQ 411

Query: 284 SQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
                 +   + +L++++A    L   +++Y+ MQ  G+  D  +Y++++     AG+  
Sbjct: 412 EAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLP 471

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  ++ E   +  +G    ++ T++ ++ + A A+ ++ ALK+  DM +AG  P+ +T+
Sbjct: 472 AAHRLFCE---MVGQGCTP-NLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTY 527

Query: 402 SS-----------------------------------LINACANAGLVEQAMHLFEEMLQ 426
           S                                    L++    AG VE+A   ++EML 
Sbjct: 528 SIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQEMLH 587

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
           AG  PN   CN LL        F R  R+  ++ L ++ +ALG
Sbjct: 588 AGLRPNVPTCNSLLST------FLRVHRMSEAYNLLQSMLALG 624



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 40/288 (13%)

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQ-----EIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           K G  A+ A +N   +      N VL Q        G    L+ +   K D  TY+T+V 
Sbjct: 298 KWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVG 357

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               AK +    ++ ++M+  G  PNT+T++ LI++   A  + +AM++F++M +AGCEP
Sbjct: 358 NLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEP 417

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA-LGEDYDGNTDRISNMEHKDKQSI 490
           +      L+    +A   D A  +++     + Q A L  D    +  I+ +        
Sbjct: 418 DRVTYCTLIDIHAKAGFLDIAMDMYQ-----RMQAAGLSPDTFTYSVIINCLGKAGHLPA 472

Query: 491 TN-----------TPNFV----------PNSHYSSFDKRF------SFKPTTTTYNILMK 523
            +           TPN V             +Y +  K +       F+P   TY+I+M+
Sbjct: 473 AHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVME 532

Query: 524 --ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               C      + +  EM+     P+   + +L+D  G +GNVE A Q
Sbjct: 533 VLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQ 580


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 132/298 (44%), Gaps = 24/298 (8%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK---NMQKLGVMADMASYNILLKAC 334
           +  ++ +  V  N+Y +   + V     +F  E Y+    M+  G   D+ ++ +L++  
Sbjct: 296 LLREMEAHGVKPNVYSYTICIRVLGQARRFD-EAYRILAEMENEGCKPDVITHTVLIQVL 354

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C AG    A++++ ++K    K   K D  TY T++  FAD    Q  +++   M + G 
Sbjct: 355 CDAGRISDAKDVFWKMK----KSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGY 410

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N + ++++I+A    G V +A+ +F+EM Q G  P     N L+   ++A +F  A  
Sbjct: 411 NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALE 470

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRI-SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
           LF+   +       G   +G T  +  N   K  +SI     +          K     P
Sbjct: 471 LFKYMDIH------GPKPNGYTHVLFINYYGKSGESIKAIQRY-------ELMKSKGIVP 517

Query: 514 TTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
                N ++            K + +E++ +G+SP+ I++T++I  C  +   + A++
Sbjct: 518 DVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVK 575



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 141/321 (43%), Gaps = 29/321 (9%)

Query: 255  NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
            + ++C  I  +C      +++  + +  +S  V+L    +NSL+   V+ + +     ++
Sbjct: 799  DFFLCPLIKHLCKQ-KKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLF 857

Query: 313  KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
              M++LG   D  +YN+LL A    G ++  +E+    + +  KG     V TY+TI+  
Sbjct: 858  AEMKELGCGPDEFTYNLLLDA---MGKSMRIEEMLKVQEEMHRKGYESTYV-TYNTIISG 913

Query: 373  FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
               ++  + A+ +  +++S G +P   T+  L++    AG +E A +LF EML+ GC+ N
Sbjct: 914  LVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKAN 973

Query: 433  SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
                NILL     A   ++   LF+                   D+  N + K    I +
Sbjct: 974  CTIYNILLNGHRIAGNTEKVCHLFQDM----------------VDQGINPDIKSYTIIID 1017

Query: 493  T--PNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
            T       N   + F +      +P   TYN+L+          +A  L NEM+  G+ P
Sbjct: 1018 TLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVP 1077

Query: 547  NHISWTILIDACGGSGNVEGA 567
            N  ++  LI   G +G    A
Sbjct: 1078 NLYTYNSLILHLGKAGKAAEA 1098



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/396 (20%), Positives = 177/396 (44%), Gaps = 46/396 (11%)

Query: 189 KELDEEFRIVQLCVN---KPDV---NLAIRYACIVPRAD------------------ILF 224
           +  DE +RI+    N   KPDV    + I+  C   R                    + +
Sbjct: 323 RRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTY 382

Query: 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284
              + +F    +  S +  ++A K    + N+     +ID     G   ++  ++++++ 
Sbjct: 383 ITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQ 442

Query: 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + +    Y +NSL++  + A      LE++K M   G   +  ++ + +     +G ++ 
Sbjct: 443 KGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIK 502

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A + Y   + +++KG++  DV   + ++   A +    MA +V  ++ + GV+P+TIT++
Sbjct: 503 AIQRY---ELMKSKGIVP-DVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYT 558

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
            +I  C+ A   ++A+ +F +M++  C P+    N L+    +A + D A+++F  + L 
Sbjct: 559 MMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIF--YQLK 616

Query: 463 KTQVALGEDYDGNTDR-ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
           +  +   E  DG  +  ++ +  + K  +    + +   ++S      ++ P   TYN +
Sbjct: 617 EMNL---EPTDGTYNTLLAGLGREGK--VKEVMHLLEEMYHS------NYPPNLITYNTI 665

Query: 522 MKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILI 555
           +   C +     AL  +  M T G  P+  S+  +I
Sbjct: 666 LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVI 701



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 88/173 (50%), Gaps = 6/173 (3%)

Query: 268  ICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMA 325
            I G+  K   +++D+  Q +  +I  +  +++    A  L   L  ++ + ++G+  D+ 
Sbjct: 986  IAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLI 1045

Query: 326  SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
            +YN+L+      G +   +E       ++ KG++  +++TY++++     A     A K+
Sbjct: 1046 TYNLLIDGL---GKSKRLEEAVSLFNEMQKKGIVP-NLYTYNSLILHLGKAGKAAEAGKM 1101

Query: 386  KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
             E++L+ G  PN  T+++LI   + +G  + A   +  M+  GC PNS  C+I
Sbjct: 1102 YEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTCHI 1154



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 6/226 (2%)

Query: 233  KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
            K R L  A+  Y        SP       ++D     G    +  ++ ++       N  
Sbjct: 916  KSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCT 975

Query: 293  VFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            ++N L+N +  A + +    ++++M   G+  D+ SY I++   C AG        + ++
Sbjct: 976  IYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQL 1035

Query: 351  KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
              +     L+ D+ TY+ ++     +K  + A+ +  +M   G+ PN  T++SLI     
Sbjct: 1036 LEMG----LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1091

Query: 411  AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            AG   +A  ++EE+L  G +PN    N L++    +   D A+  +
Sbjct: 1092 AGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAY 1137



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +LF N+   +GK  + + A++ Y+  K     P++     ++      G    ++ ++ +
Sbjct: 488 VLFINY---YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHE 544

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           L++  V+ +   +  ++   +   KF   ++++ +M +   + D+   N L+     AG 
Sbjct: 545 LKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGR 604

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A +I+ ++K +     L+    TY+T++         +  + + E+M  +   PN I
Sbjct: 605 GDEAWQIFYQLKEMN----LEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 660

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           T++++++     G V  A+ +   M   GC P+    N ++   V+  +++ AF +F
Sbjct: 661 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIF 717



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 137/344 (39%), Gaps = 45/344 (13%)

Query: 236 DLVSALRAYDASKKHLSS-------PNMY----ICRTIIDVCGICGDYMKSRAIYEDLRS 284
           D++ ALR+ D   + L         P +      C  ++D+    G       +++ ++ 
Sbjct: 138 DVIHALRSADGPAEALERFRSAARRPRVVHTTASCNYMLDLMRDHGRVGDMAEVFDVMQR 197

Query: 285 QNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           Q V  N+  F ++      +  L+        M++ G++ +  +YN L+     +G    
Sbjct: 198 QIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDRE 257

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A E+Y   K +   GV+   V TYS ++  F   +  +  L +  +M + GV PN  +++
Sbjct: 258 ALEVY---KVMMVDGVVP-SVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYT 313

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
             I     A   ++A  +  EM   GC+P+     +L+Q   +A +   A  +F  W + 
Sbjct: 314 ICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVF--WKMK 371

Query: 463 KTQVALGEDYDGNTDRISNMEHKDK-------QSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           K+        D   DR++ +   DK       QS+    N +    Y+            
Sbjct: 372 KS--------DQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYND---------NV 414

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
             Y  ++ A C     +    + +EM+  G+ P   S+  LI  
Sbjct: 415 VAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISG 458



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/323 (17%), Positives = 140/323 (43%), Gaps = 22/323 (6%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P++ +  ++ID     G   ++  I+  L+  N+      +N+L+     +  +K  + +
Sbjct: 587 PDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHL 646

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M       ++ +YN +L   C  G    A ++   +  +  KG +  D+ +Y+T++ 
Sbjct: 647 LEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDM---LYSMTTKGCIP-DLSSYNTVIY 702

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE-MLQAGCE 430
                + +  A  +   M    + P+  T  +++ +    GL+++A+H+ +E  LQ G +
Sbjct: 703 GLVKEERYNEAFSIFCQMKKV-LIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSK 761

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
            +   C+ L++  ++    +++     +  ++ + + L + +         ++H  KQ  
Sbjct: 762 TDRSSCHSLMEGILKKAGTEKSIEF--AEIIASSGITLDDFF-----LCPLIKHLCKQKK 814

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNH 548
               + +         K F     T +YN L+     +      + L  EM+ +G  P+ 
Sbjct: 815 ALEAHELVKKF-----KSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDE 869

Query: 549 ISWTILIDACGGSGNVEGALQCR 571
            ++ +L+DA G S  +E  L+ +
Sbjct: 870 FTYNLLLDAMGKSMRIEEMLKVQ 892


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 115/264 (43%), Gaps = 18/264 (6%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +E+ + M+K G  AD+  Y  L+   C  GN    +E++ E   +  KG+   +V TYS 
Sbjct: 88  MELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDE---MLGKGI-SANVVTYSC 143

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +V        W+ A  V   M   G+ P+ +T++ LI+     G    AM L   M++ G
Sbjct: 144 LVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKG 203

Query: 429 CEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
            EP++   N+LL   C E    D AF++ R        +  G+  D  T         DK
Sbjct: 204 EEPSNVTYNVLLSGLCKEGLVID-AFKILR------MMIEKGKKADVVTYNTLMKGLCDK 256

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
             +            S FD     +P   T+N+L+   C +    KA  +  +M   G  
Sbjct: 257 GKVDEALKLFN----SMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSC 312

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
            N +++ +L+  C  +G ++ A++
Sbjct: 313 GNLVTYNMLLGGCLKAGKIKEAME 336



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 18/237 (7%)

Query: 290 NIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N++ FN L+     + + T  +++++ M K G   ++ +YN+LL  C  AG    A E++
Sbjct: 279 NVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELW 338

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            +V  L   G +  + FTYS ++  F   +   +A  +  +M + G+ P    +++L+ +
Sbjct: 339 KQVLDL---GFVP-NSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMAS 394

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
               G +EQA  LF+EM  A CEP+    N ++   ++A      F+  +   +   ++ 
Sbjct: 395 LCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGD----FQFVKELQMKMVEMG 450

Query: 468 LGED---YDGNTDRISNM----EHKDKQSITNTPNFVPNSH-YSSFDKRFSFKPTTT 516
           L  D   +    +R+S +    E K          F P++  Y S  K  S K  TT
Sbjct: 451 LRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTT 507



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 140/321 (43%), Gaps = 28/321 (8%)

Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRA-------IYEDLRSQNVTLNIYVFNSL 297
           +A  +H   P++     +ID  G+C D   + A       + +     NVT N+ +    
Sbjct: 162 NAMAEHGIHPDVVTYTGLID--GLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLC 219

Query: 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                 D     ++ + M + G  AD+ +YN L+K  C  G    A +++  +   + + 
Sbjct: 220 KEGLVID---AFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM--FDNEN 274

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            L+ +VFT++ ++           A+K+   M+  G   N +T++ L+  C  AG +++A
Sbjct: 275 CLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEA 334

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
           M L++++L  G  PNS   +IL+    +    + A  LF          AL   +D NT 
Sbjct: 335 MELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPAL---FDYNTL 391

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKAL 535
             S  +    +   +    + N++          +P   ++N ++       D+  VK L
Sbjct: 392 MASLCKEGSLEQAKSLFQEMGNANC---------EPDIISFNTMIDGTLKAGDFQFVKEL 442

Query: 536 MNEMRTVGLSPNHISWTILID 556
             +M  +GL P+ ++++ LI+
Sbjct: 443 QMKMVEMGLRPDALTFSTLIN 463



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 96/233 (41%), Gaps = 20/233 (8%)

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           NI+LK  C  G      E  G ++ +  K V   D+ +Y+T++     AK  + A+ +  
Sbjct: 2   NIVLKGLCRNGGVF---EAMGLIREMGRKSV-SPDIVSYNTLINGLCKAKKLKEAVGLLL 57

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M +AG  PN++T ++L++     G +++AM L E M + G + +      L+       
Sbjct: 58  EMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNG 117

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD-KQSITNTPNFVPNSHYSSFD 506
             DR   LF           LG+    N    S + H   +       N V N+      
Sbjct: 118 NLDRGKELFDEM--------LGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAM----- 164

Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
                 P   TY  L+   C D     A  L+N M   G  P+++++ +L+  
Sbjct: 165 AEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSG 217



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMK--SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN +    +ID  G C   M   ++ ++ ++R+  +   ++ +N+LM        L+   
Sbjct: 348 PNSFTYSILID--GFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAK 405

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +++ M       D+ S+N ++     AG+    +E+  ++K +E    L+ D  T+ST+
Sbjct: 406 SLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKEL--QMKMVEMG--LRPDALTFSTL 461

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +   +       A    E M+++G TP+ + + SL+   ++ G   + ++L  +M   G
Sbjct: 462 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKG 520


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 128/315 (40%), Gaps = 55/315 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--TLNIYVFNSLMNVNAHDLKFTLEV 311
           P++     +ID  G      K+ +IY  L   +   T + Y        N+  L     V
Sbjct: 163 PDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEGV 222

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              MQK G+      YN  L     A  +  A E+Y  +K    K   + +  TY+ ++ 
Sbjct: 223 ISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMK----KERCRTNTETYTLMIN 278

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           V+  AK    +LKV  +M + G  PN  T+++L+NA A  GL E+A  +FEEM QAG EP
Sbjct: 279 VYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 338

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    N L++A      + RA               L +   G ++  S MEH       
Sbjct: 339 DVYAYNALMEA------YSRA--------------GLPQ---GASEIFSLMEH------- 368

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHI 549
                               +P   +YNIL+ A      +   +A   E++  G+ P   
Sbjct: 369 -----------------MGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMK 411

Query: 550 SWTILIDACGGSGNV 564
           S  +L+ A   SGNV
Sbjct: 412 SHMLLLSAHAKSGNV 426



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 106/227 (46%), Gaps = 7/227 (3%)

Query: 219 RADILFCNF-VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R DI+  N  +  +G+KR L  A   Y A  +    P       ++      G   ++  
Sbjct: 162 RPDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEG 221

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +  +++   +     V+N+ ++  + A   +  +EVY+ M+K     +  +Y +++    
Sbjct: 222 VISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYG 281

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            A   + + +++ E+K +  K     ++ TY+ +V  FA     + A +V E+M  AG  
Sbjct: 282 KAKQPMSSLKVFNEMKTIGCKP----NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHE 337

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           P+   +++L+ A + AGL + A  +F  M   GCEP+    NIL+ A
Sbjct: 338 PDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDA 384



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 92/202 (45%), Gaps = 5/202 (2%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLG 319
           ++D  G  G + ++ A +++L+ Q +   +     L++ +A   ++    EV   + K G
Sbjct: 381 LVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSG 440

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL---DVFTYSTIVKVFADA 376
           +  D  + N +L A   AG     + + G ++             D  TY+ +V V+  A
Sbjct: 441 LRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNVLVNVYGRA 500

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
            +          + + G+  + +TW+S I A A      + + +FEEM+ AGC P++   
Sbjct: 501 GYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEYGRCLEIFEEMVDAGCYPDAGTA 560

Query: 437 NILLQACVEACQFDRAFRLFRS 458
            +LL AC +  Q ++   + RS
Sbjct: 561 KVLLAACSDERQVEQVTAIVRS 582



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 102/230 (44%), Gaps = 13/230 (5%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           +GK +  +S+L+ ++  K     PN+     +++     G   K+  ++E+++      +
Sbjct: 280 YGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD 339

Query: 291 IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           +Y +N+LM     A   +   E++  M+ +G   D ASYNIL+ A   AG    A+  + 
Sbjct: 340 VYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQ 399

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E+K    +  +K  +   S   K    A+      +V   +  +G+ P+T   ++++NA 
Sbjct: 400 ELKQQGMRPTMKSHMLLLSAHAKSGNVAR----CEEVMAQLHKSGLRPDTFALNAMLNAY 455

Query: 409 ANAGLVEQAMHLFEEMLQ-------AGCEPNSQCCNILLQACVEACQFDR 451
             AG ++    L   M +        G  P++   N+L+     A   DR
Sbjct: 456 GRAGRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNVLVNVYGRAGYLDR 505



 Score = 45.8 bits (107), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 90/214 (42%), Gaps = 20/214 (9%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
            + D+  Y+ ++  +   +    A  +   +L A   P   T++ L+ A  N+G + +A 
Sbjct: 161 FRPDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAE 220

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478
            +  EM + G  P +   N  L   ++A   ++A  +++     + +         NT+ 
Sbjct: 221 GVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRT--------NTET 272

Query: 479 IS---NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA- 534
            +   N+  K KQ +++   F       +  K    KP   TY  L+ A   +    KA 
Sbjct: 273 YTLMINVYGKAKQPMSSLKVF-------NEMKTIGCKPNICTYTALVNAFAREGLCEKAE 325

Query: 535 -LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            +  EM+  G  P+  ++  L++A   +G  +GA
Sbjct: 326 EVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGA 359


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 124/298 (41%), Gaps = 42/298 (14%)

Query: 282 LRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    +  ++Y +++ +  +  A D     +V++ M++     +  +YN+++   C +G 
Sbjct: 234 MEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 293

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
               +E +G  + +   G L  D FTY  ++         + A  + ++M  +G+ PN +
Sbjct: 294 V---EEAFGFKEEMVDYG-LSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIV 349

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            + +L++     G   +A  + +EM+ AG +PN    + L++   +  Q  RA +L +  
Sbjct: 350 VYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEM 409

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK------- 512
                +V L  D                   T T N +   H+   DK  +F+       
Sbjct: 410 I----KVGLRPD-------------------TFTYNPLMQGHFQQHDKDGAFELLNEMRN 446

Query: 513 ----PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
               P   +Y I++   C +    +A  L+ EM + GL PN   +  LI      GN+
Sbjct: 447 SGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNI 504



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 158/396 (39%), Gaps = 77/396 (19%)

Query: 242 RAYDASKKHLSS---PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNS 296
            A+D  K+ +S+   PN  +   +I   G+C  G   ++  + +++    +  + + +N 
Sbjct: 366 EAFDILKEMISAGVQPNKIMYDNLIR--GLCKIGQLGRASKLLKEMIKVGLRPDTFTYNP 423

Query: 297 LM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT-------------- 340
           LM  +   HD     E+   M+  G++ ++ SY I++   C  G +              
Sbjct: 424 LMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEG 483

Query: 341 ------VLAQEIYGEVKH---------LE--AKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
                 + A  I G  K          LE   K  +  D+F Y++++K  +     + A 
Sbjct: 484 LKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAE 543

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           +    +   G+ P+  T+S LI+     G +E+A  L  +ML +G +PN+     LL+  
Sbjct: 544 EYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGY 603

Query: 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDG--------NTDRISNMEHKDKQSITNTPN 495
            ++  +++   + +S   S      G+  D         N  R  NME           N
Sbjct: 604 FKSNDYEKVSSILQSMLGS------GDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKN 657

Query: 496 -FVPNSH-YSS-----------------FDK--RFSFKPTTTTYNILMKACC--TDYYRV 532
             VP+ H YSS                  D+  +   +P    YN L+   C   D  R 
Sbjct: 658 GLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRA 717

Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           + + + +   GL PN +++T LID    +G++  A 
Sbjct: 718 RNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAF 753



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 128/310 (41%), Gaps = 32/310 (10%)

Query: 276 RAIYE-DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           RAI + D RS++ + +  V + L++       ++   +V   M  LG+       N LLK
Sbjct: 157 RAIQDTDHRSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLK 216

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
               A    L  ++ G    +E  G+L  DV+TYST ++    A+ +  A KV E+M   
Sbjct: 217 DLLRADAMELLWKLKG---FMEGAGILP-DVYTYSTFIEAHCKARDFDAAKKVFEEMRRR 272

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
               N +T++ +I+    +G VE+A    EEM+  G  P++     L+    +  +   A
Sbjct: 273 DCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEA 332

Query: 453 FRLFRSWTLSKTQ---VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS-HYSSFDK- 507
             L    + S  +   V  G   DG        E  D      +    PN   Y +  + 
Sbjct: 333 KALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRG 392

Query: 508 ------------------RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
                             +   +P T TYN LM+     + +  A  L+NEMR  G+ PN
Sbjct: 393 LCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPN 452

Query: 548 HISWTILIDA 557
             S+ I+I+ 
Sbjct: 453 VYSYGIMING 462



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 135/321 (42%), Gaps = 28/321 (8%)

Query: 253 SPNMYICRTIIDVCGIC-GDYMK-SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT-- 308
           SP+ +    +++  G+C G  +K ++A+ +++    +  NI V+ +L++    + K    
Sbjct: 310 SPDAFTYGALMN--GLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEA 367

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            ++ K M   GV  +   Y+ L++  C  G    A ++  E+     K  L+ D FTY+ 
Sbjct: 368 FDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEM----IKVGLRPDTFTYNP 423

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +++          A ++  +M ++G+ PN  ++  +IN     G  ++A +L EEM+  G
Sbjct: 424 LMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEG 483

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL--GEDYDGNTDRISNMEHKD 486
            +PN+     L+    +      A       T +     L            +  ME  +
Sbjct: 484 LKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAE 543

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGL 544
           +             +Y+   KR    P   TY+ L+   C   +  +   L+ +M   GL
Sbjct: 544 E-------------YYAQVQKR-GLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGL 589

Query: 545 SPNHISWTILIDACGGSGNVE 565
            PN  ++T L++    S + E
Sbjct: 590 KPNADTYTDLLEGYFKSNDYE 610



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 88/187 (47%), Gaps = 6/187 (3%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           DY K  +I + +       + +++  ++     + +++    V   ++K G++ D+  Y+
Sbjct: 608 DYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYS 667

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            L+   C   +   A  +  E+    AK  L+  +  Y+ ++  F  +     A  V + 
Sbjct: 668 SLISGLCKIADMEKAVGLLDEM----AKEGLEPGIVCYNALIDGFCRSGDISRARNVFDS 723

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           +L+ G+ PN +T+++LI+     G +  A  L++EML  G  P++   N+L   C +A  
Sbjct: 724 ILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAAD 783

Query: 449 FDRAFRL 455
            ++A  L
Sbjct: 784 LEQALFL 790



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 107/233 (45%), Gaps = 11/233 (4%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQ 285
           +R   +  ++  A       +K+   P+++I  ++I   G+C   D  K+  + +++  +
Sbjct: 635 IRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLIS--GLCKIADMEKAVGLLDEMAKE 692

Query: 286 NVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            +   I  +N+L++    + D+     V+ ++   G++ +  +Y  L+   C  G+   A
Sbjct: 693 GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDA 752

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            ++Y   K +  +G+   D F Y+ +    +DA   + AL + E+M + G   N   +++
Sbjct: 753 FDLY---KEMLDRGIAP-DAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-NVSLFNT 807

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           L++     G +++   L   M+     PN+Q    ++    +A +   A R+F
Sbjct: 808 LVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVF 860



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 95/215 (44%), Gaps = 12/215 (5%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           +VP   I + + +    K  D+  A+   D   K    P +     +ID  G C  GD  
Sbjct: 659 LVPDLHI-YSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALID--GFCRSGDIS 715

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILL 331
           ++R +++ + ++ +  N   + +L++ N    D+    ++YK M   G+  D   YN+L 
Sbjct: 716 RARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLA 775

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
             C  A +  L Q ++   + +  +G   + +F  +T+V  F      Q   K+   M+ 
Sbjct: 776 TGCSDAAD--LEQALF-LTEEMFNRGYANVSLF--NTLVHGFCKRGKLQETEKLLHVMMD 830

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
             + PN  T   +++    AG + +A  +F E+ Q
Sbjct: 831 REIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQ 865



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/385 (21%), Positives = 159/385 (41%), Gaps = 41/385 (10%)

Query: 59  LLSTVRRDLSSRNDY-YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVA 117
           LL+ +R      N Y Y  M + L ++G  +E   ++E ++      + F       M A
Sbjct: 440 LLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAF-------MYA 492

Query: 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGL 177
             I+   +EG I      L+K+ +  V P +LF           C   L  G     VG 
Sbjct: 493 PLIIGHSKEGNISLACEALEKMTKANVHP-DLF-----------CYNSLIKGLST--VGR 538

Query: 178 MEVLEEFRLPVKE---LDEEFRIVQLC--------VNKPDVNL-AIRYACIVPRADILFC 225
           ME  EE+   V++   + +EF    L         + K D  L  +  + + P AD  + 
Sbjct: 539 MEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADT-YT 597

Query: 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285
           + +  + K  D         +       P+ +I   +I       +   +  +  ++   
Sbjct: 598 DLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKN 657

Query: 286 NVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            +  ++++++SL++      D++  + +   M K G+   +  YN L+   C +G+   A
Sbjct: 658 GLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRA 717

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
           + ++  +    AKG++  +  TY+ ++           A  + ++ML  G+ P+   ++ 
Sbjct: 718 RNVFDSIL---AKGLVP-NCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNV 773

Query: 404 LINACANAGLVEQAMHLFEEMLQAG 428
           L   C++A  +EQA+ L EEM   G
Sbjct: 774 LATGCSDAADLEQALFLTEEMFNRG 798



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/324 (20%), Positives = 116/324 (35%), Gaps = 82/324 (25%)

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E +   NV  +++ +NSL+        ++   E Y  +QK G++ D  +Y+ L+   C  
Sbjct: 512 EKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKT 571

Query: 338 GN-----------------------TVLAQEIYGEVKHLEAKGVL--------KLDVFTY 366
           GN                       T L +  +    + +   +L        K D   Y
Sbjct: 572 GNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIY 631

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
             +++  + ++  ++A  V  ++   G+ P+   +SSLI+       +E+A+ L +EM +
Sbjct: 632 GIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAK 691

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G EP   C N L+     +    RA  +F S  L+K  V                    
Sbjct: 692 EGLEPGIVCYNALIDGFCRSGDISRARNVFDS-ILAKGLV-------------------- 730

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGL 544
                                     P   TY  L+   C   D      L  EM   G+
Sbjct: 731 --------------------------PNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGI 764

Query: 545 SPNHISWTILIDACGGSGNVEGAL 568
           +P+   + +L   C  + ++E AL
Sbjct: 765 APDAFVYNVLATGCSDAADLEQAL 788


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 131/291 (45%), Gaps = 45/291 (15%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           D  F + +R +GK      +++ +++ K    SP++    +++ +    G    ++++++
Sbjct: 156 DRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFD 215

Query: 281 D-LRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           + L +  VT + Y FN L+     +  +      +K M +     D+ +YN L+   C A
Sbjct: 216 EMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRA 275

Query: 338 GNTVLAQEIY-GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           G   +A  +  G VK       L  DV TY+T+V+ +        AL V E+M+S G+ P
Sbjct: 276 GKVNIAHNVVNGMVKK---STNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKP 332

Query: 397 NTITWSSLI------------------------------------NACANAGLVEQAMHL 420
           N IT+++LI                                    NA  NAG +  A+ +
Sbjct: 333 NEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEV 392

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
           FE+M+     P+S   ++L++   +   F+RA +LF    LS+ ++ L +D
Sbjct: 393 FEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDE--LSEKEILLRDD 441



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 14/252 (5%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L+ +    +LG   +  SY ++L+    A N  +A+     +K   + G +KL+   +++
Sbjct: 103 LQFFNWAPELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKR-RSNGTVKLEDRFFNS 161

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA- 427
           +++ +  A  +Q +++V   M S GV+P+ +T++SL+      G    A  +F+EML   
Sbjct: 162 LIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTY 221

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
           G  P++   NIL++   +    D  FR F+  +  K           + D ++     D 
Sbjct: 222 GVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKC----------DPDLVTYNTLVDG 271

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLS 545
                  N   N       K  +  P   TY  L++  C  +   +AL+   EM + GL 
Sbjct: 272 LCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLK 331

Query: 546 PNHISWTILIDA 557
           PN I++  LI  
Sbjct: 332 PNEITYNTLIKG 343



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 107/258 (41%), Gaps = 18/258 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           F   +R F K   +    R +    +    P++    T++D  G+C  G    +  +   
Sbjct: 230 FNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVD--GLCRAGKVNIAHNVVNG 287

Query: 282 L--RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           +  +S N+  ++  + +L+      H++   L V++ M   G+  +  +YN L+K  C  
Sbjct: 288 MVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEV 347

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
                 ++I+     L   G +  D  T +T++    +A     AL+V E M+   V P+
Sbjct: 348 QKIDKIKQIFEGA--LGGGGFIP-DTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPD 404

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQA-------GCEPNSQCCNILLQACVEACQFD 450
           + T+S LI      G  E+A  LF+E+ +        GC P       + +      +  
Sbjct: 405 SATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTA 464

Query: 451 RAFRLFRSWTLSKTQVAL 468
           +A R+FR      TQ  L
Sbjct: 465 KAERVFRQLMKRGTQDPL 482



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 17/235 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + +   VR +  K ++  AL  ++        PN     T+I   G+C      K + I+
Sbjct: 300 VTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIK--GLCEVQKIDKIKQIF 357

Query: 280 ED-LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           E  L       +    N+LMN   NA +L   LEV++ M  L V  D A+Y++L++  C 
Sbjct: 358 EGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQ 417

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLD------VFTYSTIVKVFADAKWWQMALKVKEDML 390
            GN   A++++ E   L  K +L  D      V  Y ++ +          A +V   ++
Sbjct: 418 RGNFERAEQLFDE---LSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLM 474

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             G T + +++  LI      G  E    L   ML+    P+ +    L+   ++
Sbjct: 475 KRG-TQDPLSFKILIKGHCREGTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQ 528


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 104/207 (50%), Gaps = 6/207 (2%)

Query: 253  SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
            SP  +    +ID     G   +++  +E++       N  ++N LMN      D++   E
Sbjct: 890  SPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACE 949

Query: 311  VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            +++ M K G+  D+ SY+I++   C+ G    A   + E+K       L  D+  Y+ ++
Sbjct: 950  LFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKL----SGLDPDLVCYNLMI 1005

Query: 371  KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 ++  + AL + ++M + G+TP+  T+++LI     AG+VE+A  ++EE+   G E
Sbjct: 1006 NGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLE 1065

Query: 431  PNSQCCNILLQACVEACQFDRAFRLFR 457
            PN    N L++    +   DRA+ +++
Sbjct: 1066 PNVFTYNALIRGHSMSGNPDRAYAVYK 1092



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 142/357 (39%), Gaps = 35/357 (9%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           AL+ Y         P++     ++   G   D      + +++ S  +  NIY F   + 
Sbjct: 211 ALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIR 270

Query: 300 V--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
           +   A  +     + K M   G   D+ +Y +L+ A C AG    A+E++ ++K    K 
Sbjct: 271 ILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKP 330

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
               D  TY T++  F+D        +   +M + G  P+ +T++ LI+A    G V++A
Sbjct: 331 ----DRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEA 386

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW------TLSKTQVALGED 471
               + M + G  PN    N L+   +   + D A  LF S       T + T + L  D
Sbjct: 387 FGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYI-LFID 445

Query: 472 YDGNTDRISNMEHKDKQSITN--TPNFVP--NSHYSSFD--------------KRFSFKP 513
           Y G +          ++  TN   PN V    S YS  +              K+    P
Sbjct: 446 YYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAP 505

Query: 514 TTTTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              TYNILM+ C     RV     L++EM   G  P  +    LID    +  V+ A
Sbjct: 506 DAITYNILMR-CYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEA 561



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 102/228 (44%), Gaps = 25/228 (10%)

Query: 366  YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
            Y++++     A+  +MA  +   M +AG TP+  T++  ++A   +G +++   L+EEML
Sbjct: 791  YNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEML 850

Query: 426  QAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG--NTDRIS 480
              GC+PN+   NI++   V++   D+A  L+    S   S T    G   DG     R+ 
Sbjct: 851  FRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLE 910

Query: 481  NM-----EHKDKQSITNTP--NFVPNSHYSSFD--------KRF---SFKPTTTTYNILM 522
                   E  D   + N P  N + N      D        +R      +P   +Y+I++
Sbjct: 911  EAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMV 970

Query: 523  KACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
               C       AL    E++  GL P+ + + ++I+  G S  VE AL
Sbjct: 971  DCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEAL 1018



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 102/509 (20%), Positives = 203/509 (39%), Gaps = 77/509 (15%)

Query: 74  YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV 133
           Y  +   L K G   E A+ V   +VSEG      +  +L MVA G     +   I+ V+
Sbjct: 195 YIGLIHLLLKSGFCRE-ALKVYRRMVSEGIKPSLKTYSAL-MVALG-----KRRDIETVM 247

Query: 134 GVLKKLNELGVAPLELFDGSGFKLLKNECQRLLD-SGEVEMFVGLMEVLEEFRLPVKELD 192
           G+L+++  LG+ P    +   F +    C R+L  +G+++   G+++ +++       + 
Sbjct: 248 GLLQEMESLGLRP----NIYTFTI----CIRILGRAGKIDEAYGILKRMDDAGCGPDVVT 299

Query: 193 EEFRIVQLCV-----NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247
               I  LC      N  ++ L ++ +   P   + +   + +F    DL +    +   
Sbjct: 300 YTVLIDALCNAGKLNNAKELFLKMKASSHKPDR-VTYITLLDKFSDHGDLDAIKEFWSEM 358

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305
           +     P++     +ID     G   ++    + ++ Q V  N++ +N+L+   +  + L
Sbjct: 359 EADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRL 418

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
              LE++ +M+ LG+     +Y + +     +G +  A + + ++K     G++  ++  
Sbjct: 419 DEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMK---TNGIVP-NIVA 474

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
            +  +   A+    + A +    +   G+ P+ IT++ L+     AG V+ A+ L  EM 
Sbjct: 475 CNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEME 534

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
           + GC+P     N L+    +A + D A+++F+                            
Sbjct: 535 ENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRM-------------------------- 568

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVG 543
                                K     PT  TYN L+     +       AL   M    
Sbjct: 569 ---------------------KEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADD 607

Query: 544 LSPNHISWTILIDACGGSGNVEGALQCRF 572
             PN IS+  L+D    +G V+ AL+  F
Sbjct: 608 CPPNTISFNTLLDCLCKNGEVDLALKMLF 636



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 112/249 (44%), Gaps = 20/249 (8%)

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M+K+G + +  SY  L+     +G    A ++Y   + + ++G+ K  + TYS ++  
Sbjct: 181 EKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVY---RRMVSEGI-KPSLKTYSALMVA 236

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
               +  +  + + ++M S G+ PN  T++  I     AG +++A  + + M  AGC P+
Sbjct: 237 LGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPD 296

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
                +L+ A   A + + A  LF     S  +           DR++ +   DK S   
Sbjct: 297 VVTYTVLIDALCNAGKLNNAKELFLKMKASSHK----------PDRVTYITLLDKFSDHG 346

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHIS 550
             + +    +S  +    + P   T+ IL+ A C      +A   ++ M+  G++PN  +
Sbjct: 347 DLDAI-KEFWSEMEAD-GYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHT 404

Query: 551 WTILIDACG 559
           +  LI  CG
Sbjct: 405 YNTLI--CG 411



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/404 (19%), Positives = 160/404 (39%), Gaps = 71/404 (17%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
           F+  +GK  +   A++ ++  K +   PN+  C   +      G   +++  +  L+   
Sbjct: 443 FIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCG 502

Query: 287 VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +  +   +N LM     A  +   +++   M++ G   ++   N L+     A     A 
Sbjct: 503 LAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAW 562

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           +++  +K ++    L   V TY+T++         Q A  + + M++    PNTI++++L
Sbjct: 563 KMFQRMKEMK----LAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTL 618

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR------- 457
           ++     G V+ A+ +   M +  C P+    N ++   ++  + + AF LF        
Sbjct: 619 LDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKVIY 678

Query: 458 ---------------------SWTLSKTQV-ALGEDYDGN--TDRISN--MEHKDKQSIT 491
                                ++ ++K  V  +G+  DG+   D +    +E +  QSI 
Sbjct: 679 PDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQSIL 738

Query: 492 NTPNFVPNS-----------------HYSSFD---------KRFSFKPTTTTYNI----L 521
              + V N+                 H  + D         K F   P+   YN     L
Sbjct: 739 FAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGL 798

Query: 522 MKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           +KA  T+      L  +M+  G +P+  ++ + +DA G SG ++
Sbjct: 799 LKARLTE--MAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIK 840



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 114/297 (38%), Gaps = 24/297 (8%)

Query: 277  AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
             ++  +++   T +++ +N  ++    +  +K   ++Y+ M   G   +  ++NI++   
Sbjct: 809  GLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGL 868

Query: 335  CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              + +   A ++Y ++      G      +TY  ++         + A +  E+ML  G 
Sbjct: 869  VKSNSLDKAIDLYYDL----MSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGC 924

Query: 395  TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             PN   ++ L+N     G VE A  LF  M++ G  P+ +  +I++       + D A  
Sbjct: 925  MPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALH 984

Query: 455  LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSFK 512
             F    LS     L  D       I+ +    +               S FD  +     
Sbjct: 985  YFEELKLS----GLDPDLVCYNLMINGLGRSQRVE----------EALSLFDEMRNRGIT 1030

Query: 513  PTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            P   TYN  IL             +  E++  GL PN  ++  LI     SGN + A
Sbjct: 1031 PDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRA 1087


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 159/345 (46%), Gaps = 35/345 (10%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN+     I+D  G+C  G   +++ ++E++++Q +  +I  +NSL++    A   + + 
Sbjct: 213 PNVITYNIIVD--GLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESK 270

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +   M   G+  DM ++N+L+   C  G  + A+++ G +  +E+ G++  D+ TY+++
Sbjct: 271 RLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVM--IES-GIVP-DLVTYNSL 326

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           ++ F        A ++   M S G  P+ I+++ LIN  +    VE+AM L+ EML  G 
Sbjct: 327 IEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK 386

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            PN    + LL+    A + D A +LF   ++  +++     G   DG        E   
Sbjct: 387 RPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMK 446

Query: 487 KQSITNTPNF---VPN---------------SHYSSFDK--RFSFKPTTTTYNILMKACC 526
             +   + NF   + N               + +  F+K      +P   TY I++   C
Sbjct: 447 LFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFC 506

Query: 527 TDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +    KA  L+ +M   G +P+ I++  L+     S  +E  +Q
Sbjct: 507 REGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQ 551



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 57/301 (18%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A +  +  +  + NI  +N+L+      H +     ++  MQKLG   D+ +Y  L+K  
Sbjct: 125 AAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGL 184

Query: 335 CLAGNTVLA----QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           C  GN  +A    QE+  ++   E     K +V TY+ IV           A ++ E+M 
Sbjct: 185 CGTGNINIALKLHQEMLNDISRYEIN--CKPNVITYNIIVDGLCKVGREDEAKQLFEEMK 242

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
           + G+ P+ I+++SLI+    AG  E++  L +EML  G +P+    N+L+    +  +  
Sbjct: 243 TQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVI 302

Query: 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
            A +L      S                                                
Sbjct: 303 EAKKLLGVMIES-----------------------------------------------G 315

Query: 511 FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             P   TYN L++  C   D    + L   M + G  P+ IS+ +LI+    +  VE A+
Sbjct: 316 IVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAM 375

Query: 569 Q 569
           +
Sbjct: 376 K 376



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/241 (20%), Positives = 106/241 (43%), Gaps = 41/241 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P++    ++I+   + GD   +R ++  + S+    ++  +N L+N  +  LK    +++
Sbjct: 318 PDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKL 377

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV- 370
           Y  M  +G   ++ +Y+ LLK   LAG    A++++  +K   A G+ + + +TY   + 
Sbjct: 378 YNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMK---AHGIAE-NSYTYGIFLD 433

Query: 371 ------------KVFADAKWWQMALKVK----------------------EDMLSAGVTP 396
                       K+F + K     L+++                      E + + G  P
Sbjct: 434 GLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEP 493

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N +T++ +I+     G V++A  L ++M   GC P+    N L++   E+ + +   +L 
Sbjct: 494 NVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLL 553

Query: 457 R 457
            
Sbjct: 554 H 554



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/239 (16%), Positives = 105/239 (43%), Gaps = 6/239 (2%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  + K   +  A++ Y+        PN+    +++    + G    ++ ++  +++  
Sbjct: 361 LINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHG 420

Query: 287 VTLNIYVFNSLMN-VNAHDLKF-TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +  N Y +   ++ +  +D  F  ++++  ++      ++ + N L+   C AG    A 
Sbjct: 421 IAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAW 480

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           E++   + L  +G  + +V TY+ ++  F        A  + + M + G TP+ IT+++L
Sbjct: 481 ELF---EKLSNEG-HEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTL 536

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           +     +  +E+ + L   M Q    P++  C+I++    +  ++     L   + + K
Sbjct: 537 MRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPIQK 595


>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Glycine max]
          Length = 682

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 152/384 (39%), Gaps = 69/384 (17%)

Query: 231 FGKKRDLVSALRAYDAS-KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           F K+ D V A   ++   ++ L  P++     +I     CG + +   I+E ++      
Sbjct: 228 FFKRGDFVKAGEMWERLLREELVFPSVVSYNVMISGLCKCGRFSEGLEIWERMKKNERKC 287

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +++ +++L++    A DL    +VY+ M   GV  D+ + N +L   C AGN     E++
Sbjct: 288 DLFTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFELW 347

Query: 348 GEVKHLEAK--------------------------GVLKLDVFTYSTIVKVFADAKWWQM 381
            E+     +                          G+L+ D  TY  +V       +   
Sbjct: 348 EEMGKCSLRNVRSYNIFLKGLFENGKVDDAMMLWDGLLEADSATYGVVVHGLCWNGYVNR 407

Query: 382 ALKVKEDM--LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           AL+V E+      G+  +   +SSLINA    G +++A  + E M + GC+ NS  CN+L
Sbjct: 408 ALQVLEEAEHREGGMDVDEFAYSSLINALCKEGRLDEADGVVELMNKRGCKFNSHVCNVL 467

Query: 440 LQACVEACQFDRAFRLFR------------SWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
           +   V+  + D A ++FR            S+ +    +   E +    D ++ M  K  
Sbjct: 468 IDGFVKHSKLDSAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEK-- 525

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
                                  +KP   TY+ L+           A  L ++    G  
Sbjct: 526 ----------------------GWKPDIITYSTLIGGLYESNMMDAALRLWHQFLDTGHK 563

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
           P+ I + I+I     SG VE ALQ
Sbjct: 564 PDIIMYNIVIHRLCSSGKVEDALQ 587



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 109/230 (47%), Gaps = 14/230 (6%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           EF K R L++ +     S      P+     T+I      GD   +  +++++R + V  
Sbjct: 163 EFEKGRGLLTWMWGAGMS------PDRITYGTLIGGVAKSGDLGFALEVFDEMRERGVEP 216

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNM-QKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           ++  +N +++      D     E+++ + ++  V   + SYN+++   C  G      EI
Sbjct: 217 DVVCYNMIIDGFFKRGDFVKAGEMWERLLREELVFPSVVSYNVMISGLCKCGRFSEGLEI 276

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
           +  +K  E K     D+FTYS ++   ++A     A KV E+M+  GV P+ +T ++++N
Sbjct: 277 WERMKKNERK----CDLFTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLN 332

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
               AG VE+   L+EEM +     N +  NI L+   E  + D A  L+
Sbjct: 333 GLCKAGNVEECFELWEEMGKCSLR-NVRSYNIFLKGLFENGKVDDAMMLW 381



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 5/150 (3%)

Query: 308 TLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
            L V++ M  + G    + S+N LL A   +     A+  +   K+ EA  V   +V TY
Sbjct: 96  ALHVFQTMPHVFGCSPTIRSFNTLLNAFVESHQWARAENFF---KYFEAARV-SPNVETY 151

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + ++KV      ++    +   M  AG++P+ IT+ +LI   A +G +  A+ +F+EM +
Sbjct: 152 NVLMKVMCKKGEFEKGRGLLTWMWGAGMSPDRITYGTLIGGVAKSGDLGFALEVFDEMRE 211

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            G EP+  C N+++    +   F +A  ++
Sbjct: 212 RGVEPDVVCYNMIIDGFFKRGDFVKAGEMW 241



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 115/261 (44%), Gaps = 27/261 (10%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   ++  + E +  +    N +V N L++  V    L   ++V++ M   G    + SY
Sbjct: 440 GRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFREMSGKGCSLTVVSY 499

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           NIL+     A      +E Y  V  +  KG  K D+ TYST++    ++     AL++  
Sbjct: 500 NILINGLLRAERF---REAYDCVNEMLEKG-WKPDIITYSTLIGGLYESNMMDAALRLWH 555

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
             L  G  P+ I ++ +I+   ++G VE A+ L+  + Q       +C N++    +   
Sbjct: 556 QFLDTGHKPDIIMYNIVIHRLCSSGKVEDALQLYSTLRQ------KKCVNLVTHNTI--- 606

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS-NMEHKDKQS---ITNTPNFVPNSHYS 503
             +  +++      SK    + ED +   D IS N+  K   S   +T+   F+ ++   
Sbjct: 607 -MEGFYKVGNCEMASKIWAHILED-ELQPDIISYNITLKGLCSCGRVTDAVGFLDDALVR 664

Query: 504 SFDKRFSFKPTTTTYNILMKA 524
                  F PT  T+NIL++A
Sbjct: 665 ------GFLPTAITWNILVRA 679



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 127/306 (41%), Gaps = 35/306 (11%)

Query: 265 VCGICGDYMKSRAIY----EDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKL 318
           V G+C +   +RA+      + R   + ++ + ++SL+N    +  L     V + M K 
Sbjct: 396 VHGLCWNGYVNRALQVLEEAEHREGGMDVDEFAYSSLINALCKEGRLDEADGVVELMNKR 455

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   +    N+L+           A +++ E   +  KG   L V +Y+ ++     A+ 
Sbjct: 456 GCKFNSHVCNVLIDGFVKHSKLDSAVKVFRE---MSGKGC-SLTVVSYNILINGLLRAER 511

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           ++ A     +ML  G  P+ IT+S+LI     + +++ A+ L+ + L  G +P+    NI
Sbjct: 512 FREAYDCVNEMLEKGWKPDIITYSTLIGGLYESNMMDAALRLWHQFLDTGHKPDIIMYNI 571

Query: 439 LLQACVEACQFDRAFRLFRSWTLSK-----TQVALGEDYDGNTDRISNMEHKDKQSITNT 493
           ++     + + + A +L+ +    K     T   + E +     ++ N E   K      
Sbjct: 572 VIHRLCSSGKVEDALQLYSTLRQKKCVNLVTHNTIMEGF----YKVGNCEMASKIWAHIL 627

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISW 551
            +                +P   +YNI +K  C+      A+  +++    G  P  I+W
Sbjct: 628 ED--------------ELQPDIISYNITLKGLCSCGRVTDAVGFLDDALVRGFLPTAITW 673

Query: 552 TILIDA 557
            IL+ A
Sbjct: 674 NILVRA 679


>gi|356510655|ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 712

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 106/206 (51%), Gaps = 7/206 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL--MNVNAHDLKFTLEV 311
           P+      I+DV    G   +  ++YE  R+     +   F+ L  M   A D      V
Sbjct: 257 PDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYV 316

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M+ +GV  ++  YN LL+A   AG    A+ ++ E+  +E+ G++  +  T + ++K
Sbjct: 317 FQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEM--IES-GIVPNEK-TLTAVIK 372

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCE 430
           ++  A+W + AL++ + M   G   + I +++L+N CA+ GLVE+A  LF +M Q+  C+
Sbjct: 373 IYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSVHCK 432

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
           P+S     +L         D+A +LF
Sbjct: 433 PDSWSYTAMLNIYGSQGDVDKAMKLF 458



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 4/130 (3%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M K G+M D  +Y+ +L      G     +E+    +   A G  K D  T+S + K
Sbjct: 247 FERMYKTGLMPDEVTYSAILDVYARLGK---VEEVISLYERGRATG-WKPDPITFSVLGK 302

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +F +A  +     V ++M S GV PN + +++L+ A   AG    A  LFEEM+++G  P
Sbjct: 303 MFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIESGIVP 362

Query: 432 NSQCCNILLQ 441
           N +    +++
Sbjct: 363 NEKTLTAVIK 372



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 4/131 (3%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN+ +K+        L +++     H      + LD  TYSTI+        +  A+   
Sbjct: 192 YNVTMKSLRFGKQFGLIEDL----AHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWF 247

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           E M   G+ P+ +T+S++++  A  G VE+ + L+E     G +P+    ++L +   EA
Sbjct: 248 ERMYKTGLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEA 307

Query: 447 CQFDRAFRLFR 457
             +D    +F+
Sbjct: 308 GDYDGIRYVFQ 318



 Score = 45.1 bits (105), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 86/231 (37%), Gaps = 38/231 (16%)

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +  + +L ++   Y+  +K     K + +   +   M+  GV  + IT+S++I+      
Sbjct: 179 IRTQNLLPMETIFYNVTMKSLRFGKQFGLIEDLAHQMIDNGVPLDNITYSTIISCAKKCN 238

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR-----SW-----TLS 462
           L ++A+H FE M + G  P+    + +L       + +    L+       W     T S
Sbjct: 239 LYDKAVHWFERMYKTGLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFS 298

Query: 463 KTQVALGE--DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
                 GE  DYDG       ME     S+   PN V                    YN 
Sbjct: 299 VLGKMFGEAGDYDGIRYVFQEME-----SVGVQPNLV-------------------VYNT 334

Query: 521 LMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L++A          + L  EM   G+ PN  + T +I   G +     AL+
Sbjct: 335 LLEAMGKAGKPGFARGLFEEMIESGIVPNEKTLTAVIKIYGKARWSRDALE 385


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 16/260 (6%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M +LG + ++ SYNILLK  C    +  A E+   +   +  G    DV +Y+T++
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMP--DDGGDCPPDVVSYTTVI 206

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F        A     +ML  G+ PN +T+SS+I A   A  +++AM +   M++ G  
Sbjct: 207 NGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVM 266

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN +  N ++     + Q   A    +               DG    +           
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKM-----------HSDGVEPDVVTYNSLMDYLC 315

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK--ALMNEMRTVGLSPNH 548
            N         + S  KR   KP  TTY  L++   T    V+   L++ M   G+ PNH
Sbjct: 316 KNGRCTEARKMFDSMTKR-GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 374

Query: 549 ISWTILIDACGGSGNVEGAL 568
             ++ILI A    G V+ A+
Sbjct: 375 YVFSILICAYAKQGKVDQAM 394



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 132/304 (43%), Gaps = 30/304 (9%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD  K+   Y ++  + +  N+  ++S++     A  +   +EV  +M K GVM +  +Y
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N ++   C +G     +E  G +K + + GV + DV TY++++           A K+ +
Sbjct: 273 NSIVHGYCSSGQ---PKEAIGFLKKMHSDGV-EPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            M   G+ P   T+ +L+   A  G + +   L + M++ G  PN    +IL+ A  +  
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 448 QFDRAFRLF---RSWTLSKTQVALGEDYD--GNTDRISNMEHKDKQSITNTPNFVPNSHY 502
           + D+A  +F   R   L+   V  G        + R+ +     +Q I            
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI------------ 436

Query: 503 SSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560
              D+R S  P    YN L+ + C    + + K L+ EM   G+  + I +  +ID+   
Sbjct: 437 ---DERLS--PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 561 SGNV 564
            G V
Sbjct: 492 EGRV 495



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 116/253 (45%), Gaps = 18/253 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           IL C + ++ GK   +  A+  +   ++   +P+     T+I +    G    +   +E 
Sbjct: 379 ILICAYAKQ-GK---VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQ 434

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF------TLEVYKNMQKLGVMADMASYNILLKACC 335
           +  + ++    V+NSL+    H L          E+   M   G+  D   +N ++ + C
Sbjct: 435 MIDERLSPGNIVYNSLI----HSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G  + +++++     L  +  +K D+ TYST++  +  A     A K+   M+S G+ 
Sbjct: 491 KEGRVIESEKLF----DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +T+++LIN       +E A+ LF EM  +G  P+    NI+LQ   +  +   A  L
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606

Query: 456 FRSWTLSKTQVAL 468
           +   T S TQ+ L
Sbjct: 607 YVGITESGTQLEL 619



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 148/367 (40%), Gaps = 31/367 (8%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P   + +   +  F K+ DL  A   Y         PN+    +II          K+  
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +   +    V  N   +NS+++   ++   K  +   K M   GV  D+ +YN L+   C
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    A++++  +     K  LK ++ TY T+++ +A          + + M+  G+ 
Sbjct: 316 KNGRCTEARKMFDSM----TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 371

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN   +S LI A A  G V+QAM +F +M Q G  P++     ++    ++ + + A R 
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 456 FRSWT---LSKTQVA---------LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
           F       LS   +          + + +D   + I  M  +     T   N + +SH  
Sbjct: 432 FEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 504 S---------FD--KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHIS 550
                     FD   R   KP   TY+ L+   C      +A  L+  M +VG+ P+ ++
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVT 551

Query: 551 WTILIDA 557
           +  LI+ 
Sbjct: 552 YNTLING 558



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 110/229 (48%), Gaps = 6/229 (2%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A+R ++       SP   +  ++I    I   + K++ +  ++  + + L+   FNS+++
Sbjct: 428 AMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID 487

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
            +  + +   + +++  M ++GV  D+ +Y+ L+   CLAG    A ++   +  +    
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG--- 544

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            +K D  TY+T++  +      + AL +  +M S+GV+P+ IT++ ++           A
Sbjct: 545 -MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAA 603

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
             L+  + ++G +      NI+L    +    D A R+F++  L+  Q+
Sbjct: 604 KELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 66/330 (20%), Positives = 147/330 (44%), Gaps = 23/330 (6%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           ++G++D  + V  K+ + G+ P  +  G+   +L   C+    SG VE  +   E + + 
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL---CK----SGRVEDAMRYFEQMIDE 438

Query: 185 RLPVKELDEEFRIVQLCV-NKPD------VNLAIRYACIVPRADILFCNFVREFGKKRDL 237
           RL    +     I  LC+ +K D      + +  R  C+     I F + +    K+  +
Sbjct: 439 RLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL---DTIFFNSIIDSHCKEGRV 495

Query: 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           + + + +D   +    P++    T+ID   + G   ++  +   + S  +  +   +N+L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 298 MN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           +N       ++  L +++ M+  GV  D+ +YNI+L+       T  A+E+Y  +     
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI----T 611

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +   +L++ TY+ I+           AL++ +++    +   T T++ +I A    G  +
Sbjct: 612 ESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRND 671

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
           +A  LF  +   G  P+ +  +++ +  +E
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIE 701


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 159/390 (40%), Gaps = 57/390 (14%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           + D++ C   ++ F   R+L  A+R  +  + +   P++Y    +I           +  
Sbjct: 94  KPDVVLCTKLIKGFFNSRNLKKAMRVMEILETY-GDPDVYSYNAMISGFSKANQIDSANQ 152

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++ +RS+  + ++  +N ++    +   L+   EV   + K G    + +Y IL++A  
Sbjct: 153 VFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATI 212

Query: 336 LAGNTVLAQEIYGE--------------------------------VKHLEAKGVLKLDV 363
           L G    A E++ E                                V+HL A+G    DV
Sbjct: 213 LEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGC-NPDV 271

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            +Y+ +++ F +   W+   ++ +DM+ +G  PN +T S LI++    G V +A+++ E 
Sbjct: 272 VSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEV 331

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M + G  P+S   + L+ A  +  + D A                    DG    I N  
Sbjct: 332 MKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMV-----------SDGCLPDIVNY- 379

Query: 484 HKDKQSITNTPNF-VPNSHYSSFDK--RFSFKPTTTTYNILMKACCTDYYRVKAL--MNE 538
                 +     F   +     F+K       PT   YN +  A  +   ++KAL  ++E
Sbjct: 380 ---NTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISE 436

Query: 539 MRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           M   G+ P+ I++  LI      G V+ A+
Sbjct: 437 MIRKGIDPDEITYNSLISCLCRDGLVDEAI 466



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 124/272 (45%), Gaps = 21/272 (7%)

Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
           N+ +LK  + V + ++  G   D+ SYN ++     A     A +++  ++   ++G   
Sbjct: 109 NSRNLKKAMRVMEILETYGD-PDVYSYNAMISGFSKANQIDSANQVFDRMR---SRG-FS 163

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            DV TY+ ++         ++A +V +++L  G  P+ IT++ LI A    G + +A+ L
Sbjct: 164 PDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALEL 223

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
           F+E++  G  P+    N +++   +    DRA    R  +      A G + D  +  I 
Sbjct: 224 FDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLS------ARGCNPDVVSYNIL 277

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN--- 537
                +K    +    + +   S  +      P   T++IL+ + C +  RV+  +N   
Sbjct: 278 LRSFLNKSRWEDGERLMKDMVLSGCE------PNVVTHSILISSFCRE-GRVREAVNVLE 330

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            M+  GL+P+  S+  LI A    G ++ A++
Sbjct: 331 VMKEKGLTPDSYSYDPLISAFCKEGRLDLAIE 362



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 90/195 (46%), Gaps = 14/195 (7%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           + E ++ + +T + Y ++ L++    +  L   +E  + M   G + D+ +YN +L   C
Sbjct: 328 VLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLC 387

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G   LA +++ ++  +     ++     Y+T+            AL++  +M+  G+ 
Sbjct: 388 KFGCADLALDVFEKLDEVGCPPTVR----AYNTMFSALWSCGNKIKALEMISEMIRKGID 443

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI-LLQACVEACQFDRAFR 454
           P+ IT++SLI+     GLV++A+ L  +M     +P     NI LL  C       +A R
Sbjct: 444 PDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMC-------KAHR 496

Query: 455 LFRSWTLSKTQVALG 469
           +F    L  T V  G
Sbjct: 497 VFEGIELLITMVEKG 511



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 19/170 (11%)

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           L+N    AG   ++++  E ++  G +P+   C  L++    +    +A R+        
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRV-------- 119

Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS--FKPTTTTYNIL 521
             + + E Y G+ D  S        S  N  +    S    FD+  S  F P   TYNI+
Sbjct: 120 --MEILETY-GDPDVYSYNAMISGFSKANQID----SANQVFDRMRSRGFSPDVVTYNIM 172

Query: 522 MKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           + + C+      A  +M+E+   G  P+ I++TILI+A    G +  AL+
Sbjct: 173 IGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALE 222


>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42310, mitochondrial; Flags: Precursor
 gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
 gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 709

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 152/342 (44%), Gaps = 22/342 (6%)

Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
           K D V  LR Y   ++     ++ +   II      GD  K+  +    ++  ++     
Sbjct: 247 KIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTAT 306

Query: 294 FNSLMNVNAHDLKFTLE---VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
             S+++  A D   TLE   +++ +++ G+     +YN LLK     G    A+ +   V
Sbjct: 307 LVSIISALA-DSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESM---V 362

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
             +E +GV   D  TYS ++  + +A  W+ A  V ++M +  V PN+  +S L+    +
Sbjct: 363 SEMEKRGV-SPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRD 421

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G  ++   + +EM   G +P+ Q  N+++    +    D A   F           L E
Sbjct: 422 RGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDR--------MLSE 473

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD-- 528
             +   DR++     D     +  + V    + + ++R    P  TTYNI++ +      
Sbjct: 474 GIE--PDRVTWNTLIDCHC-KHGRHIVAEEMFEAMERRGCL-PCATTYNIMINSYGDQER 529

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           +  +K L+ +M++ G+ PN ++ T L+D  G SG    A++C
Sbjct: 530 WDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIEC 571



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 157/389 (40%), Gaps = 62/389 (15%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +R + I PR    +   ++ + K   L  A       +K   SP+ +    +ID     G
Sbjct: 330 LRQSGIKPRTRA-YNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAG 388

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
            +  +R + +++ + +V  N +VF+ L+    +  + + T +V K M+ +GV  D   YN
Sbjct: 389 RWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYN 448

Query: 329 I-----------------------------------LLKACCLAGNTVLAQEIYGEVKHL 353
           +                                   L+   C  G  ++A+E++   + +
Sbjct: 449 VVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF---EAM 505

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
           E +G L     TY+ ++  + D + W    ++   M S G+ PN +T ++L++    +G 
Sbjct: 506 ERRGCLPCAT-TYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGR 564

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDRAFRLFRSWTLSKTQVALGE 470
              A+   EEM   G +P+S   N L+ A  +   + Q   AFR+  S  L  + +AL  
Sbjct: 565 FNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNS 624

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTD 528
             +   +     + +D ++               + K    KP   TY  LMKA      
Sbjct: 625 LINAFGE-----DRRDAEAFA----------VLQYMKENGVKPDVVTYTTLMKALIRVDK 669

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDA 557
           + +V  +  EM   G  P+  + ++L  A
Sbjct: 670 FQKVPVVYEEMIMSGCKPDRKARSMLRSA 698



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 144/320 (45%), Gaps = 48/320 (15%)

Query: 274 KSRAIYED-LRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNIL 330
           +S  +YE  L SQ  TL    +N+L+   A  +D++  L +   M++ G  +D  +Y+++
Sbjct: 179 RSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLV 238

Query: 331 LKACCLAG--NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           +++   +   ++V+   +Y E++    +  L+LDV   + I+  FA +     AL++   
Sbjct: 239 IQSLTRSNKIDSVMLLRLYKEIE----RDKLELDVQLVNDIIMGFAKSGDPSKALQLLGM 294

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
             + G++  T T  S+I+A A++G   +A  LFEE+ Q+G +P ++  N LL+  V+   
Sbjct: 295 AQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGP 354

Query: 449 FDRAFRLF-----RSWTLSKTQVALGEDYDGNTDR-------ISNMEHKDKQSITNTPN- 495
              A  +      R  +  +   +L  D   N  R       +  ME  D Q     PN 
Sbjct: 355 LKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQ-----PNS 409

Query: 496 FVPNSHYSSFDKR---------------FSFKPTTTTYNILM----KACCTDYYRVKALM 536
           FV +   + F  R                  KP    YN+++    K  C D+       
Sbjct: 410 FVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH--AMTTF 467

Query: 537 NEMRTVGLSPNHISWTILID 556
           + M + G+ P+ ++W  LID
Sbjct: 468 DRMLSEGIEPDRVTWNTLID 487


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 129/287 (44%), Gaps = 24/287 (8%)

Query: 289 LNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           +N+ + N+++   +    L    E+Y+ M   G   D+ +YNIL+   C  G    A  +
Sbjct: 314 VNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRM 373

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
             E   +E KG    ++ TYST++  F     W  A  + + M + G + N+  ++ +I 
Sbjct: 374 LDE---MEEKGCAP-NIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIY 429

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           A    G +++AM L +EM   GC+P+    N ++       Q D A  +F +  L +  V
Sbjct: 430 ALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGN-LLEEGVV 488

Query: 467 ALGEDYDGNTDRISNMEHKDK--QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
           A G  Y+     I  + H  +  + +      V   H    D          +YN L+KA
Sbjct: 489 ANGITYN---TLIHALLHSGRWQEGLRLANEMV--LHGCPLD--------VVSYNGLIKA 535

Query: 525 CCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            C +    R   L+ EM T G+ PN+ S+ +LI+    +G V  AL+
Sbjct: 536 LCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALE 582



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 150/324 (46%), Gaps = 26/324 (8%)

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           SA+R  D  ++   +PN+    T++      G +  +RA+ + + ++  ++N   +N ++
Sbjct: 369 SAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGII 428

Query: 299 NVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                D K    + + + M+  G   D+ +YN ++   C       A+ I+G   +L  +
Sbjct: 429 YALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFG---NLLEE 485

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           GV+  +  TY+T++     +  WQ  L++  +M+  G   + ++++ LI A    G V++
Sbjct: 486 GVVA-NGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDR 544

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476
           +M L EEM+  G +PN+   N+L+    E C   +A ++  +  LSK  +  G   D  T
Sbjct: 545 SMMLLEEMMTKGIKPNNFSYNMLIN---ELC---KAGKVRDALELSKEMLNQGLTPDIVT 598

Query: 477 -DRISNMEHKD--KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK 533
            + + N   K     +  N    +PN          +  P   TYNIL+   C       
Sbjct: 599 YNTLINGLCKVGWTHAALNLLEKLPNE---------NVHPDIVTYNILISWHCKVRLLDD 649

Query: 534 A--LMNEMRTVGLSPNHISWTILI 555
           A  L+++  + G+ PN  +W +++
Sbjct: 650 ASMLLDKAVSGGIVPNERTWGMMV 673



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 10/221 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII-DVCGICGDYM-KSRAIYED 281
           +   +   GK   L  A+R     K     P++    TII  +C    D M ++  I+ +
Sbjct: 424 YNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCN--NDQMDEAEHIFGN 481

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           L  + V  N   +N+L++   H  ++   L +   M   G   D+ SYN L+KA C  GN
Sbjct: 482 LLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGN 541

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              +  +  E   +  KG+ K + F+Y+ ++     A   + AL++ ++ML+ G+TP+ +
Sbjct: 542 VDRSMMLLEE---MMTKGI-KPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIV 597

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           T+++LIN     G    A++L E++      P+    NIL+
Sbjct: 598 TYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILI 638



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 72/355 (20%), Positives = 134/355 (37%), Gaps = 49/355 (13%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
             G+ RD ++ LR      +H   P+  + +T+I      G   ++  + +++       
Sbjct: 192 RLGRARDALALLRGM---ARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAA 248

Query: 290 NIYVFNS--LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           ++  FN   L       ++    +   M   G    + +Y  LL+  C    T  A E Y
Sbjct: 249 DVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLC---RTRQADEAY 305

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
             +       V +++V   +T+++   A+ K  + A ++ E M S G  P+  T++ L++
Sbjct: 306 AMLGR-----VPEVNVVMLNTVIRGCLAEGKLAR-ATELYEMMGSKGCPPDVHTYNILMH 359

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---------- 456
                G    A+ + +EM + GC PN    + LL +      +D A  +           
Sbjct: 360 GLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSM 419

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
            S   +    ALG+  DG  D    +  + K                        KP   
Sbjct: 420 NSQGYNGIIYALGK--DGKLDEAMRLVQEMKSQ--------------------GCKPDIC 457

Query: 517 TYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           TYN ++   C +    +A  +   +   G+  N I++  LI A   SG  +  L+
Sbjct: 458 TYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLR 512



 Score = 45.8 bits (107), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 109/292 (37%), Gaps = 38/292 (13%)

Query: 271 DYMKSR-AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNI 329
           D M  R A+    RS N      V ++L   + H     L +Y+ M +  V     ++ +
Sbjct: 133 DQMPRRFAVTPSFRSYNA-----VLSTLARADCH--ADALLLYRRMLRDRVPPTTFTFGV 185

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
             +A C  G    A++    ++ +   G +  D   Y T++           A  + ++M
Sbjct: 186 AARALCRLGR---ARDALALLRGMARHGCVP-DAVLYQTVIHALVAQGGVAEAATLLDEM 241

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
           L  G   +  T++ ++      G V +A  L + M+  GC P+      LL+      Q 
Sbjct: 242 LLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQA 301

Query: 450 DRAF----RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
           D A+    R+     +    V  G   +G   R + +                   Y   
Sbjct: 302 DEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATEL-------------------YEMM 342

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILI 555
             +    P   TYNILM   C       A  +++EM   G +PN ++++ L+
Sbjct: 343 GSK-GCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLL 393


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 140/365 (38%), Gaps = 57/365 (15%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           PN+   R ++  C   G   + + I   + ++    N  +FNSL++    + D  +  ++
Sbjct: 312 PNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKL 371

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTV------LAQEIYGEVKHLE----------- 354
           +K M K G       YNI + + C            L ++ Y E+  L            
Sbjct: 372 FKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNF 431

Query: 355 ---------------------AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
                                 KG +  D  TYS ++    DA   + A  + E+M   G
Sbjct: 432 ARCLCGAGKFDQAFKIICEMMGKGFVPDDS-TYSKVIGFLCDASKVEKAFSLFEEMKRNG 490

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + P+  T++ LI++   AGL++QA   F+EML  GC PN      L+ A ++A Q   A 
Sbjct: 491 IVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVAD 550

Query: 454 RLFRSWTL--------SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
            LF    L        + T +  G    G  ++   +  + +  I ++        Y   
Sbjct: 551 ELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESS----DMDKYFKL 606

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSG 562
           D      P   TY  L+   C    RVK    L++ M   G  PN I +  +ID     G
Sbjct: 607 DHNNCEGPNVITYGALVDGLCKA-NRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIG 665

Query: 563 NVEGA 567
            ++ A
Sbjct: 666 KLQDA 670



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 10/187 (5%)

Query: 245 DASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302
           D    H   PN  +   +ID  G C  G    ++ ++  +  +  + N+Y ++S ++   
Sbjct: 640 DTMLAHGCEPNQIVYDAVID--GFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLF 697

Query: 303 HD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
            D  L   L+V   M +     ++  Y  ++   C  G T    E Y  +  +E KG   
Sbjct: 698 KDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKT---DEAYKLMLKMEEKGC-N 753

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            +V TY+ ++  F  +   +  L++  DM S G  PN IT+  LIN C + GL+++A  L
Sbjct: 754 PNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKL 813

Query: 421 FEEMLQA 427
            +EM Q 
Sbjct: 814 LDEMKQT 820



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 126/308 (40%), Gaps = 41/308 (13%)

Query: 294 FNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L+ V   A  L     V + M     + D  + +    + C  G    A ++  E +
Sbjct: 214 YNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREAFDLIDEAE 273

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
                     D   Y+ +V    +A  ++ A+ +   M S+   PN +T+  L++ C   
Sbjct: 274 DFVP------DTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRK 327

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ------ 465
           G + +   +   M+  GC PN +  N L+ A  ++  +  A++LF+       Q      
Sbjct: 328 GQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVY 387

Query: 466 -VALGE----DYDGNTDRISNMEHKDKQSI--------TNTPNFVPN-SHYSSFDKRF-- 509
            + +G     +   ++D +  +E    + +         N  NF         FD+ F  
Sbjct: 388 NIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKI 447

Query: 510 -------SFKPTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACG 559
                   F P  +TY+ ++   C D  +V+   +L  EM+  G+ P+  ++TILID+  
Sbjct: 448 ICEMMGKGFVPDDSTYSKVIGFLC-DASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFC 506

Query: 560 GSGNVEGA 567
            +G ++ A
Sbjct: 507 KAGLIQQA 514



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 76/170 (44%), Gaps = 6/170 (3%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  + +L++    A+ +K   E+   M   G   +   Y+ ++   C  G    AQE++
Sbjct: 615 NVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVF 674

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            +   +  +G    +++TYS+ +          + LKV   ML    TPN + ++ +++ 
Sbjct: 675 TK---MSERGY-SPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDG 730

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
               G  ++A  L  +M + GC PN      ++    ++ + ++   LFR
Sbjct: 731 LCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFR 780



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 79/205 (38%), Gaps = 49/205 (23%)

Query: 293 VFNSLM-----NVNAHD---LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           VF+ L+     NVNA D   LKF +E+  +  +L         N L++ CC  G   +A 
Sbjct: 141 VFDKLLDLLGCNVNADDRVPLKFLMEIKDDDHELLRRL----LNFLVRKCCRNGWWNMAL 196

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG----------- 393
           E  G +K    K        TY+ +++VF  A     A  VK +MLS             
Sbjct: 197 EELGRLKDFGYKPSQT----TYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCF 252

Query: 394 ----------------------VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                                   P+T+ ++ +++    A L E+AM +   M  + C P
Sbjct: 253 AYSLCKGGKCREAFDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIP 312

Query: 432 NSQCCNILLQACVEACQFDRAFRLF 456
           N     ILL  C+   Q  R  R+ 
Sbjct: 313 NVVTYRILLSGCLRKGQLGRCKRIL 337


>gi|9755886|emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus]
          Length = 700

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 116/240 (48%), Gaps = 9/240 (3%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           ++     +  +G+  ++  AL  YD ++      +     T+I + G  G+Y     IYE
Sbjct: 243 NVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYE 302

Query: 281 DLRSQNVTLNIYVFNSL---MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           +++S  V  N+ ++N L   M       + T+ ++K++   G   + ++Y  L++A   A
Sbjct: 303 EMKSLGVKPNLVIYNRLLDSMGKAKRPWQATM-IHKDLISNGFEPNWSTYAALIRAYGRA 361

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TP 396
                A  IY   + ++ KG L+L V  Y+T++ + AD  +   A ++ +DM S+G   P
Sbjct: 362 RYGEDALVIY---RQMKGKG-LELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEP 417

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           ++ T+SSLI   +  G V +A     EM +AG EP       L+Q   +A Q D   R F
Sbjct: 418 DSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTF 477



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   +R +G   +    L  Y+  K     PN+ I   ++D  G      ++  I++D
Sbjct: 279 VTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKD 338

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           L S     N   + +L+     A   +  L +Y+ M+  G+   +  YN LL  C   G 
Sbjct: 339 LISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQMKGKGLELTVILYNTLLSMCADIGY 398

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A EI+ ++K   + G  + D +T+S+++ V++       A     +M  AG  P   
Sbjct: 399 VDEAFEIFQDMK---SSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLF 455

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
             +SLI     A  V+  +  FE++L+ G EP+ + C  LL
Sbjct: 456 VLTSLIQCYGKAKQVDDVVRTFEQVLELGIEPDDRFCGCLL 496



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 105/210 (50%), Gaps = 10/210 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           P+      +ID  G  G+   + ++Y+  R++   ++   F++L+ +  +   +   L +
Sbjct: 241 PDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNI 300

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y+ M+ LGV  ++  YN LL +   A     A  I+   K L + G  + +  TY+ +++
Sbjct: 301 YEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIH---KDLISNG-FEPNWSTYAALIR 356

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CE 430
            +  A++ + AL +   M   G+    I +++L++ CA+ G V++A  +F++M  +G CE
Sbjct: 357 AYGRARYGEDALVIYRQMKGKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTCE 416

Query: 431 PNSQCCNILLQA---CVEACQFDRAFRLFR 457
           P+S   + L+     C    + + A R  R
Sbjct: 417 PDSWTFSSLITVYSCCGRVSEAEAALREMR 446



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 139/353 (39%), Gaps = 50/353 (14%)

Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           R  IL+   ++ F K +DL  + + +D   +    P+     T+I     CG   ++   
Sbjct: 171 REVILYNVTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPKRAVEW 230

Query: 279 YEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           +E + S  +  +     ++++    A +++  L +Y   +      D  +++ L++    
Sbjct: 231 FEKMPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGY 290

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           AGN      IY E+K L   GV K ++  Y+ ++     AK    A  + +D++S G  P
Sbjct: 291 AGNYDGCLNIYEEMKSL---GV-KPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEP 346

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N  T+++LI A   A   E A+ ++ +M   G E      N LL  C +    D AF +F
Sbjct: 347 NWSTYAALIRAYGRARYGEDALVIYRQMKGKGLELTVILYNTLLSMCADIGYVDEAFEIF 406

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
                                          Q + ++    P+S        ++F    T
Sbjct: 407 -------------------------------QDMKSSGTCEPDS--------WTFSSLIT 427

Query: 517 TYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            Y     +CC      +A + EMR  G  P     T LI   G +  V+  ++
Sbjct: 428 VY-----SCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVR 475


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 53/261 (20%)

Query: 310  EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +++K+M+ +G   D  ++N+LL     +G      E+Y E+     K     D  TY+ +
Sbjct: 809  DLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKP----DAITYNIV 864

Query: 370  VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
            +   A +     AL    D++S+   P   T+  LI+  A  G +E+AM LFEEM   GC
Sbjct: 865  ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGC 924

Query: 430  EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            +PN    NIL+    +    + A +LF+                    R+ N        
Sbjct: 925  KPNCAIFNILINGYGKIGDTETACQLFK--------------------RMVNE------- 957

Query: 490  ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPN 547
                                  +P   +Y IL+   C      +AL   NE+++ GL P+
Sbjct: 958  --------------------GIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPD 997

Query: 548  HISWTILIDACGGSGNVEGAL 568
             I++  +I+  G S  +E AL
Sbjct: 998  FIAYNRIINGLGKSQRMEEAL 1018



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 142/320 (44%), Gaps = 55/320 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++     ++DV     D+ ++ A ++ +R Q +  N++ +N+L+   + A  ++  L++
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M+ +GV     +YNI +     +G T  A E + ++K   AKG++  ++   +  + 
Sbjct: 425 LGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMK---AKGIVP-NIVACNASLY 480

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
             A+    + A  +   +   G+ P+++T++ ++   +  G V++A++L  EM++ GCEP
Sbjct: 481 SLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEP 540

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    N L+ +  +A + D A+++F                    DR+ +M+        
Sbjct: 541 DVIVVNSLIDSLYKAGRVDEAWQMF--------------------DRMKDMK-------- 572

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHI 549
                                PT  TYN L+     +    KA  L   M     SPN I
Sbjct: 573 -------------------LSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTI 613

Query: 550 SWTILIDACGGSGNVEGALQ 569
           S+  L+D    +  VE AL+
Sbjct: 614 SFNTLLDCFCKNDEVELALK 633



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 6/210 (2%)

Query: 262  IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLG 319
            +ID     G   ++  ++E++       N  +FN L+N      D +   +++K M   G
Sbjct: 899  LIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEG 958

Query: 320  VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
            +  D+ SY IL+   CLAG    A   + E+K       L  D   Y+ I+     ++  
Sbjct: 959  IRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTG----LDPDFIAYNRIINGLGKSQRM 1014

Query: 380  QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
            + AL +  +M + G+ P+  T++SL+     AG+VEQA  ++EE+  AG EP+    N L
Sbjct: 1015 EEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNAL 1074

Query: 440  LQACVEACQFDRAFRLFRSWTLSKTQVALG 469
            ++    +   + A+ ++++  +      +G
Sbjct: 1075 IRGYSLSENPEHAYTVYKNMMVDGCNPNIG 1104



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 112/269 (41%), Gaps = 34/269 (12%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V   M+K G + +  SYN L+     +G    A E+Y   + + ++G LK  + TYS ++
Sbjct: 179 VLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVY---RRMVSEG-LKPSLKTYSALM 234

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 +  +M + + ++M   G+ PN  T++  I     AG +++A  +F  M   GC 
Sbjct: 235 VALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCG 294

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ-- 488
           P+     +L+ A   A Q + A  LF                     ++    HK  Q  
Sbjct: 295 PDLVTYTVLIDALCNAGQLENAKELFV--------------------KMKANGHKPDQVI 334

Query: 489 SITNTPNFVPNSHYSSFDKRFS------FKPTTTTYNILMKACCT--DYYRVKALMNEMR 540
            IT    F       +F + +S      + P   T+ IL+   C   D+    A  + MR
Sbjct: 335 YITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMR 394

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQ 569
             G+ PN  ++  LI     +G +E AL+
Sbjct: 395 KQGILPNLHTYNTLICGLLRAGRIEDALK 423



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 125/317 (39%), Gaps = 51/317 (16%)

Query: 290 NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+Y F   + V   A  +    E+++ M   G   D+ +Y +L+ A C AG    A+E++
Sbjct: 261 NVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF 320

Query: 348 GEVK--------------------------------HLEAKGVLKLDVFTYSTIVKVFAD 375
            ++K                                 +EA G +  DV T++ +V V   
Sbjct: 321 VKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMP-DVVTFTILVDVLCK 379

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
           A+ +  A    + M   G+ PN  T+++LI     AG +E A+ L   M   G +P +  
Sbjct: 380 ARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYT 439

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
            NI +    ++ +  +A   F      K +  +      N    S  E    +      N
Sbjct: 440 YNIFIDYFGKSGETGKAVETFEKM---KAKGIVPNIVACNASLYSLAEMGRLREAKTMFN 496

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWT 552
            +         +     P + TYN++MK C +   +V     L++EM   G  P+ I   
Sbjct: 497 GL---------RENGLAPDSVTYNMMMK-CYSKVGQVDEAVNLLSEMIRNGCEPDVIVVN 546

Query: 553 ILIDACGGSGNVEGALQ 569
            LID+   +G V+ A Q
Sbjct: 547 SLIDSLYKAGRVDEAWQ 563



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 139/354 (39%), Gaps = 21/354 (5%)

Query: 219  RADILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTIIDVCGICGDYMKSRA 277
            R D      VR   K +  + A + +D   K L  SP +     +I          K+  
Sbjct: 750  REDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWD 809

Query: 278  IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACC 335
            +++D+++     + + FN L+ V+    K T   E+YK M       D  +YNI++ +  
Sbjct: 810  LFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLA 869

Query: 336  LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             + N   A + + ++   + +   +    TY  ++   A     + A+++ E+M   G  
Sbjct: 870  KSNNLDKALDFFYDLVSSDFRPTPR----TYGPLIDGLAKVGRLEEAMRLFEEMSDYGCK 925

Query: 396  PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            PN   ++ LIN     G  E A  LF+ M+  G  P+ +   IL+     A + D A   
Sbjct: 926  PNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYY 985

Query: 456  FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
            F           L  D+    +RI N   K ++           + Y+    R    P  
Sbjct: 986  FNEL----KSTGLDPDFIA-YNRIINGLGKSQRMEEAL------ALYNEMRNR-GIVPDL 1033

Query: 516  TTYNILM--KACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             TYN LM          + K +  E++  GL P+  ++  LI     S N E A
Sbjct: 1034 YTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHA 1087



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 112/247 (45%), Gaps = 18/247 (7%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           + L C  +R  G+  D   AL+     +     P  Y     ID  G  G+  K+   +E
Sbjct: 406 NTLICGLLRA-GRIED---ALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFE 461

Query: 281 DLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            ++++ +  NI   N+ +   A    L+    ++  +++ G+  D  +YN+++K     G
Sbjct: 462 KMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVG 521

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----KWWQMALKVKEDMLSAGV 394
               A  +  E+     +   + DV   ++++     A    + WQM  ++K+  LS   
Sbjct: 522 QVDEAVNLLSEM----IRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLS--- 574

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P  +T+++L++     G V++A+ LFE M++  C PN+   N LL    +  + + A +
Sbjct: 575 -PTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALK 633

Query: 455 LFRSWTL 461
           +F   T+
Sbjct: 634 MFSKMTV 640



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 103/234 (44%), Gaps = 6/234 (2%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
           F+  FGK  +   A+  ++  K     PN+  C   +      G   +++ ++  LR   
Sbjct: 443 FIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENG 502

Query: 287 VTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +  +   +N +M   +    +   + +   M + G   D+   N L+ +   AG    A 
Sbjct: 503 LAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAW 562

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           +++  +K ++    L   V TY+T++         Q A+++ E M+    +PNTI++++L
Sbjct: 563 QMFDRMKDMK----LSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTL 618

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           ++       VE A+ +F +M    C+P+    N ++   ++  + + AF  F  
Sbjct: 619 LDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQ 672



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 92/186 (49%), Gaps = 6/186 (3%)

Query: 223  LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
            +F   +  +GK  D  +A + +         P++     ++D   + G   ++   + +L
Sbjct: 930  IFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNEL 989

Query: 283  RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            +S  +  +   +N ++N    +  ++  L +Y  M+  G++ D+ +YN L+    LAG  
Sbjct: 990  KSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMV 1049

Query: 341  VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
              A+ +Y E   L+  G L+ DVFTY+ +++ ++ ++  + A  V ++M+  G  PN  T
Sbjct: 1050 EQAKRMYEE---LQLAG-LEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGT 1105

Query: 401  WSSLIN 406
            ++ L N
Sbjct: 1106 YAQLPN 1111


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 53/261 (20%)

Query: 310  EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +++K+M+ +G   D  ++N+LL     +G      E+Y E+     K     D  TY+ +
Sbjct: 809  DLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKP----DAITYNIV 864

Query: 370  VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
            +   A +     AL    D++S+   P   T+  LI+  A  G +E+AM LFEEM   GC
Sbjct: 865  ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGC 924

Query: 430  EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            +PN    NIL+    +    + A +LF+                    R+ N        
Sbjct: 925  KPNCAIFNILINGYGKIGDTETACQLFK--------------------RMVNE------- 957

Query: 490  ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPN 547
                                  +P   +Y IL+   C      +AL   NE+++ GL P+
Sbjct: 958  --------------------GIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPD 997

Query: 548  HISWTILIDACGGSGNVEGAL 568
             I++  +I+  G S  +E AL
Sbjct: 998  FIAYNRIINGLGKSQRMEEAL 1018



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 6/210 (2%)

Query: 262  IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLG 319
            +ID     G   ++  ++E++       N  +FN L+N      D +   +++K M   G
Sbjct: 899  LIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEG 958

Query: 320  VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
            +  D+ SY IL+   CLAG    A   + E+K       L  D   Y+ I+     ++  
Sbjct: 959  IRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTG----LDPDFIAYNRIINGLGKSQRM 1014

Query: 380  QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
            + AL +  +M + G+ P+  T++SL+     AG+VEQA  ++EE+  AG EP+    N L
Sbjct: 1015 EEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNAL 1074

Query: 440  LQACVEACQFDRAFRLFRSWTLSKTQVALG 469
            ++    +   + A+ ++++  +      +G
Sbjct: 1075 IRGYSLSENPEHAYTVYKNMMVDGCNPNIG 1104



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 140/320 (43%), Gaps = 55/320 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++     ++DV     D+ ++ A ++ +R Q +  N++ +N+L+   + A  ++  L++
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M+ +GV     +Y   +     +G T  A E + ++K   AKG++  ++   +  + 
Sbjct: 425 LDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMK---AKGIVP-NIVACNASLY 480

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
             A+    + A  +   +   G+ P+++T++ ++   +  G V++A++L  EM++ GCEP
Sbjct: 481 SLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEP 540

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    N L+ +  +A + D A+++F                    DR+ +M+        
Sbjct: 541 DVIVVNSLIDSLYKAGRVDEAWQMF--------------------DRMKDMK-------- 572

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHI 549
                                PT  TYN L+     +    KA  L   M     SPN I
Sbjct: 573 -------------------LSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTI 613

Query: 550 SWTILIDACGGSGNVEGALQ 569
           S+  L+D    +  VE AL+
Sbjct: 614 SFNTLLDCFCKNDEVELALK 633



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 113/247 (45%), Gaps = 18/247 (7%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           + L C  +R  G+  D   AL+  D  +     P  Y   T ID  G  G+  K+   +E
Sbjct: 406 NTLICGLLRA-GRIED---ALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFE 461

Query: 281 DLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            ++++ +  NI   N+ +   A    L+    ++  +++ G+  D  +YN+++K     G
Sbjct: 462 KMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVG 521

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----KWWQMALKVKEDMLSAGV 394
               A  +  E+     +   + DV   ++++     A    + WQM  ++K+  LS   
Sbjct: 522 QVDEAVNLLSEM----IRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLS--- 574

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P  +T+++L++     G V++A+ LFE M+   C PN+   N LL    +  + + A +
Sbjct: 575 -PTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALK 633

Query: 455 LFRSWTL 461
           +F   T+
Sbjct: 634 MFSKMTV 640



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 112/269 (41%), Gaps = 34/269 (12%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V   M+K G + +  SYN L+     +G    A E+Y   + + ++G LK  + TYS ++
Sbjct: 179 VLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVY---RRMVSEG-LKPSLKTYSALM 234

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 +  +M + + ++M   G+ PN  T++  I     AG +++A  +F  M   GC 
Sbjct: 235 VALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCG 294

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ-- 488
           P+     +L+ A   A Q + A  LF                     ++    HK  Q  
Sbjct: 295 PDLVTYTVLIDALCNAGQLENAKELFV--------------------KMKANGHKPDQVI 334

Query: 489 SITNTPNFVPNSHYSSFDKRFS------FKPTTTTYNILMKACCT--DYYRVKALMNEMR 540
            IT    F       +F + +S      + P   T+ IL+   C   D+    A  + MR
Sbjct: 335 YITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMR 394

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQ 569
             G+ PN  ++  LI     +G +E AL+
Sbjct: 395 KQGILPNLHTYNTLICGLLRAGRIEDALK 423



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 139/354 (39%), Gaps = 21/354 (5%)

Query: 219  RADILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTIIDVCGICGDYMKSRA 277
            R D      VR   K +  + A + +D   K L  SP +     +I          K+  
Sbjct: 750  REDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWD 809

Query: 278  IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACC 335
            +++D+++     + + FN L+ V+    K T   E+YK M       D  +YNI++ +  
Sbjct: 810  LFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLA 869

Query: 336  LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             + N   A + + ++   + +   +    TY  ++   A     + A+++ E+M   G  
Sbjct: 870  KSNNLDKALDFFYDLVSSDFRPTPR----TYGPLIDGLAKVGRLEEAMRLFEEMSDYGCK 925

Query: 396  PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            PN   ++ LIN     G  E A  LF+ M+  G  P+ +   IL+     A + D A   
Sbjct: 926  PNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYY 985

Query: 456  FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
            F           L  D+    +RI N   K ++           + Y+    R    P  
Sbjct: 986  FNEL----KSTGLDPDFIA-YNRIINGLGKSQRMEEAL------ALYNEMRNR-GIVPDL 1033

Query: 516  TTYNILM--KACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             TYN LM          + K +  E++  GL P+  ++  LI     S N E A
Sbjct: 1034 YTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHA 1087



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 127/310 (40%), Gaps = 37/310 (11%)

Query: 290 NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+Y F   + V   A  +    E+++ M   G   D+ +Y +L+ A C AG    A+E++
Sbjct: 261 NVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF 320

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            ++K   A G  K D   Y T++  F D        +    M + G  P+ +T++ L++ 
Sbjct: 321 VKMK---ANG-HKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDV 376

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
              A   ++A   F+ M + G  PN    N L+   + A + + A +L  +      Q  
Sbjct: 377 LCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPT 436

Query: 468 LGE-----DYDGNTDR----ISNMEHKDKQSITNTPNFVP--NSHYSSFD---------- 506
                   DY G +      +   E    + I   PN V    S YS  +          
Sbjct: 437 AYTYITFIDYFGKSGETGKAVETFEKMKAKGI--VPNIVACNASLYSLAEMGRLREAKTM 494

Query: 507 ----KRFSFKPTTTTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDACG 559
               +     P + TYN++MK C +   +V     L++EM   G  P+ I    LID+  
Sbjct: 495 FNGLRENGLAPDSVTYNMMMK-CYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLY 553

Query: 560 GSGNVEGALQ 569
            +G V+ A Q
Sbjct: 554 KAGRVDEAWQ 563



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 104/237 (43%), Gaps = 6/237 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +  F+  FGK  +   A+  ++  K     PN+  C   +      G   +++ ++  LR
Sbjct: 440 YITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLR 499

Query: 284 SQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              +  +   +N +M   +    +   + +   M + G   D+   N L+ +   AG   
Sbjct: 500 ENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVD 559

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A +++  +K ++    L   V TY+T++         Q A+++ E M+    +PNTI++
Sbjct: 560 EAWQMFDRMKDMK----LSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISF 615

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           ++L++       VE A+ +F +M    C+P+    N ++   ++  + + AF  F  
Sbjct: 616 NTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQ 672



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 106/246 (43%), Gaps = 10/246 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI--CGDYMKSRAIY 279
           + F   V    K RD   A   +D  +K    PN++   T+I  CG+   G    +  + 
Sbjct: 368 VTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLI--CGLLRAGRIEDALKLL 425

Query: 280 EDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           + + S  V    Y + + ++    + +    +E ++ M+  G++ ++ + N  L +    
Sbjct: 426 DTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEM 485

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A+ ++  ++    +  L  D  TY+ ++K ++       A+ +  +M+  G  P+
Sbjct: 486 GRLREAKTMFNGLR----ENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPD 541

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            I  +SLI++   AG V++A  +F+ M      P     N LL    +  +  +A  LF 
Sbjct: 542 VIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFE 601

Query: 458 SWTLSK 463
           S    K
Sbjct: 602 SMIXKK 607



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 92/186 (49%), Gaps = 6/186 (3%)

Query: 223  LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
            +F   +  +GK  D  +A + +         P++     ++D   + G   ++   + +L
Sbjct: 930  IFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNEL 989

Query: 283  RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            +S  +  +   +N ++N    +  ++  L +Y  M+  G++ D+ +YN L+    LAG  
Sbjct: 990  KSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMV 1049

Query: 341  VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
              A+ +Y E   L+  G L+ DVFTY+ +++ ++ ++  + A  V ++M+  G  PN  T
Sbjct: 1050 EQAKRMYEE---LQLAG-LEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGT 1105

Query: 401  WSSLIN 406
            ++ L N
Sbjct: 1106 YAQLPN 1111



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 19/240 (7%)

Query: 336 LAGNTVLAQEIYGEV---KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           L G T++  E+   +   + L   G+ + D F    +V+V    K    A ++ +     
Sbjct: 723 LMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIP-LVRVLCKHKRELYAYQIFDKFTKK 781

Query: 393 -GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G++P   +++ LI         E+A  LF++M   GC P++   N+LL    ++ +   
Sbjct: 782 LGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITE 841

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
            F L++     + +       D  T  I         ++    +F  +   S       F
Sbjct: 842 LFELYKEMISRRCKP------DAITYNIVISSLAKSNNLDKALDFFYDLVSS------DF 889

Query: 512 KPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +PT  TY  L+   A          L  EM   G  PN   + ILI+  G  G+ E A Q
Sbjct: 890 RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQ 949


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 6/183 (3%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           + P ++    +ID     GD   +R ++E+++ + +  +   +NS+++       L  T+
Sbjct: 91  AKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTV 150

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
             ++ M+ +    D+ +YN L+   C  G      E + E+K    +  LK +V +YST+
Sbjct: 151 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMK----RNGLKPNVVSYSTL 206

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           V  F      Q A+K   DM   G+ PN  T++SLI+A    G +  A  L  EMLQ G 
Sbjct: 207 VDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGV 266

Query: 430 EPN 432
           E N
Sbjct: 267 EWN 269



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 110/281 (39%), Gaps = 55/281 (19%)

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           VF++L +V  +   ++  ++ +  M++  V     S N LL      G T   +  + ++
Sbjct: 27  VFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDM 86

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
               AK      VFTY+ ++         + A  + E+M   G+ P+T+T++S+I+    
Sbjct: 87  IGAGAKPT----VFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGK 142

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G ++  +  FEEM    CEP+    N L+    +  +  +    FR             
Sbjct: 143 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREM----------- 191

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
                                               KR   KP   +Y+ L+ A C +  
Sbjct: 192 ------------------------------------KRNGLKPNVVSYSTLVDAFCKEGM 215

Query: 531 RVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             +A+    +MR VGL PN  ++T LIDA    GN+  A +
Sbjct: 216 MQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFR 256



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/362 (18%), Positives = 138/362 (38%), Gaps = 36/362 (9%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A++ +   K+    P    C  ++      G     +  ++D+        ++ +N +++
Sbjct: 44  AIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMID 103

Query: 300 V--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                 D++    +++ M+  G++ D  +YN ++      G        + E+K +    
Sbjct: 104 CMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDM---- 159

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
             + DV TY+ ++  F         L+   +M   G+ PN +++S+L++A    G+++QA
Sbjct: 160 CCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQA 219

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR-------SWTLSKTQVALGE 470
           +  + +M + G  PN      L+ A  +      AFRL          W +  T  AL +
Sbjct: 220 IKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVV-TYTALID 278

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPN------------------SHYSSFDKRFSFK 512
              G  +    +   D+    +    V                     ++      F  +
Sbjct: 279 GLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQ 338

Query: 513 PTTTTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
                Y  ++   C    +V+A   L  +M   GL P+  ++T L+D     GNV  AL 
Sbjct: 339 ANAAIYTAMIDGLCKG-NQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALA 397

Query: 570 CR 571
            R
Sbjct: 398 LR 399



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 93/217 (42%), Gaps = 24/217 (11%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YED 281
           FC    +FGK   L   L  +   K++   PN+    T++D    C + M  +AI  Y D
Sbjct: 175 FC----KFGK---LPKGLEFFREMKRNGLKPNVVSYSTLVDA--FCKEGMMQQAIKFYVD 225

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R   +  N Y + SL++      +L     +   M ++GV  ++ +Y  L+   C   N
Sbjct: 226 MRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWEN 285

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL----KVKEDMLSAGVT 395
                 +  E+  L+    +K+ V T+  ++      K    A+    ++  D    G+ 
Sbjct: 286 PTEGLHLLDEMVELD----IKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDF---GLQ 338

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
            N   ++++I+       VE A  LFE+M Q G  P+
Sbjct: 339 ANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPD 375



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 49/172 (28%)

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P    + +L +   + G+VE+A+  F +M +    P ++ CN LL    +  + D   R 
Sbjct: 23  PGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF 82

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           F      K  +  G                                          KPT 
Sbjct: 83  F------KDMIGAGA-----------------------------------------KPTV 95

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            TYNI++   C   D    + L  EM+  GL P+ +++  +ID  G  G ++
Sbjct: 96  FTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLD 147



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/224 (18%), Positives = 100/224 (44%), Gaps = 18/224 (8%)

Query: 261 TIIDVC----GICGDYMKSRAIYEDLRSQN---VTLNIYVFNSLMN--VNAHDLKFTLEV 311
           T++  C    G+C + + S+AI    R  N   +  N  ++ ++++     + ++    +
Sbjct: 304 TVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTL 363

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M + G++ D  +Y  L+      GN + A  +  ++     +  +KLD+  Y+++V 
Sbjct: 364 FEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKM----VETGMKLDLLAYTSLVW 419

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA---G 428
             +     Q A    E+M+  G+ P+ +   S++      G + +A+ L   +++     
Sbjct: 420 GLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCINEAVELQSYLMKHQLLT 479

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            + ++   NI L      C F  A +L   + + + +++  + Y
Sbjct: 480 SDNDNALPNIYLDP--NPCFFWTAEKLIDEYIVHQQELSFEQKY 521



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 5/209 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   V  F K+  +  A++ Y   ++    PN Y   ++ID     G+   +  +  +
Sbjct: 201 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANE 260

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    V  N+  + +L++      +    L +   M +L +   + ++ +L+   C    
Sbjct: 261 MLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKL 320

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A + +G + +      L+ +   Y+ ++         + A  + E M   G+ P+  
Sbjct: 321 VSKAIDYFGRISNDFG---LQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRT 377

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAG 428
            ++SL++     G V +A+ L ++M++ G
Sbjct: 378 AYTSLMDGNFKQGNVLEALALRDKMVETG 406


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 107/269 (39%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+ + + G  A +  +NIL+   C  G+  +AQ ++  +     K  L+  V 
Sbjct: 105 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI----TKWGLRPSVV 160

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  ML++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 161 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEM 220

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  ++                            
Sbjct: 221 LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY---------------------------- 252

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  +   L++EM   
Sbjct: 253 --KQMLSQ-----------------SLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMK 293

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+  ++T LID C   G+++ A + R
Sbjct: 294 GLKPDKFTYTTLIDGCCKEGDLDAAFEHR 322



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 127/296 (42%), Gaps = 28/296 (9%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++++++ +    +  ++  +N+LMN  +   DL     +   M   GV  D+ +Y
Sbjct: 138 GDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 197

Query: 328 NILLKACCLAGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           ++L+   C       A E++ E  VK L   GV      T++T++          +A+++
Sbjct: 198 SVLINGLCKESKMDDANELFDEMLVKGLVPNGV------TFTTLIDGHCKNGRVDLAMEI 251

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + MLS  + P+ IT+++LI      G + QA  L +EM   G +P+      L+  C +
Sbjct: 252 YKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCK 311

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
               D AF   +       ++    D    T  IS +  + +          P       
Sbjct: 312 EGDLDAAFEHRKRMIQENIRL----DDVAYTAIISGLCQEGR----------PVDAEKML 357

Query: 506 DKRFS--FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
            +  S   KP T TY +++   C   D ++   L+ EM+  G  P+  ++ +L++ 
Sbjct: 358 REMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 153/365 (41%), Gaps = 49/365 (13%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR- 276
           R+DI +F   +  + +   L  A+  Y  +++H        CR +++        MK R 
Sbjct: 51  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLE------HLMKLRY 104

Query: 277 -----AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNI 329
                  YE++       ++Y FN LM+      D++    V+  + K G+   + SYN 
Sbjct: 105 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNT 164

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           L+      G+     E +     + A GV + DV+TYS ++           A ++ ++M
Sbjct: 165 LMNGYIRLGDL---DEGFRLKSAMLASGV-QPDVYTYSVLINGLCKESKMDDANELFDEM 220

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
           L  G+ PN +T+++LI+     G V+ AM ++++ML     P+    N L+    +    
Sbjct: 221 LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDL 280

Query: 450 DRAFRLFRSWTL--------SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
           ++A  L    ++        + T +  G   +G+ D  +  EH+ +    N         
Sbjct: 281 NQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLD--AAFEHRKRMIQEN--------- 329

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACG 559
                     +     Y  ++   C +   V A  ++ EM +VGL P+  ++T++I+   
Sbjct: 330 ---------IRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFC 380

Query: 560 GSGNV 564
             G+V
Sbjct: 381 KKGDV 385



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 104/246 (42%), Gaps = 45/246 (18%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYV 293
           DL    R   A       P++Y    +I+  G+C +     A  +++++  + +  N   
Sbjct: 174 DLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLVKGLVPNGVT 231

Query: 294 FNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           F +L++ +  +  +   +E+YK M    ++ D+ +YN L+   C  G+     + +G + 
Sbjct: 232 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDL---NQAHGLID 288

Query: 352 HLEAKGVLKLDVFTYSTIV-----KVFADAKWWQMALKVKE------------------- 387
            +  KG LK D FTY+T++     +   DA +      ++E                   
Sbjct: 289 EMSMKG-LKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQE 347

Query: 388 -----------DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                      +MLS G+ P+T T++ +IN     G V +   L +EM + G  P+    
Sbjct: 348 GRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTY 407

Query: 437 NILLQA 442
           N+L+  
Sbjct: 408 NVLMNG 413



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 96/214 (44%), Gaps = 6/214 (2%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           C  P +   F   +  F K  D+  A   +DA  K    P++    T+++     GD  +
Sbjct: 118 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 177

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
              +   + +  V  ++Y ++ L+N    + K     E++  M   G++ +  ++  L+ 
Sbjct: 178 GFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLID 237

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G   LA EIY   K + ++ +L  D+ TY+T++           A  + ++M   
Sbjct: 238 GHCKNGRVDLAMEIY---KQMLSQSLLP-DLITYNTLIYGLCKKGDLNQAHGLIDEMSMK 293

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           G+ P+  T+++LI+ C   G ++ A    + M+Q
Sbjct: 294 GLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQ 327


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 144/346 (41%), Gaps = 37/346 (10%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313
           P++Y    ++    + G   ++     D+ +  V  +I  +N L N     L      +K
Sbjct: 303 PDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILAN-GFRILGLISGAWK 361

Query: 314 NMQKL---GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            +Q++   G+  D+ +Y IL+   C  GN    +E +   + + ++G LKL + TY+ ++
Sbjct: 362 VVQRMLLNGLNPDLVTYTILICGHCQMGNI---EESFKLKEKMLSQG-LKLSIVTYTVLL 417

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                +     A+ +  +M   G+ P+ +T+S LI+     G VE+A+ L+EEM      
Sbjct: 418 SSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIY 477

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA-------LGEDYDGNTDRISNME 483
           PNS  C+ ++    E      A   F S T  K+ VA       +  D       I    
Sbjct: 478 PNSFVCSAIISGLFEKGAISEAQMYFDSVT--KSDVAEEIILYNIMIDGYAKLGNIGEAV 535

Query: 484 HKDKQSITN--TPNFVP-NSHYSSFDKR---------------FSFKPTTTTYNILMKAC 525
              KQ I    +P  V  NS    F K+                   PT+ TY  LM   
Sbjct: 536 RSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGY 595

Query: 526 CT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           C   D + +  +++EM    + P  I++T+++      G +  ++Q
Sbjct: 596 CEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQ 641



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 4/143 (2%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M K G++ D+ SYNILL   C+AG+   A E   +   +E  GV + D+ TY+ +   F 
Sbjct: 296 MIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTND---MENHGV-EPDIVTYNILANGFR 351

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                  A KV + ML  G+ P+ +T++ LI      G +E++  L E+ML  G + +  
Sbjct: 352 ILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIV 411

Query: 435 CCNILLQACVEACQFDRAFRLFR 457
              +LL +  ++ + D A  L  
Sbjct: 412 TYTVLLSSLCKSGRIDEAVILLH 434



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           YM +R ++ D  + N  +  +         AHDL+   +++  M +  +     +YN+L+
Sbjct: 645 YMYARGLFPDQITYNTVIQSFC-------KAHDLQKAFQLHNQMLQHSLQPSPVTYNVLI 697

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C+ GN   A  +   ++       ++L    Y+TI+K        Q AL     M+ 
Sbjct: 698 NGLCVYGNLKDADRLLVTLQDQS----IRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVE 753

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G   +   +S++IN      L+  A   F  ML  G  P+   C ++L A   +   + 
Sbjct: 754 RGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNS 813

Query: 452 AFRLF 456
            F +F
Sbjct: 814 VFEIF 818



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/320 (17%), Positives = 128/320 (40%), Gaps = 57/320 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEV 311
           PN ++C  II      G   +++  ++ +   +V   I ++N +++  A   ++   +  
Sbjct: 478 PNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRS 537

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           YK + + G+   + ++N L+   C  G    A ++   +K     G++   V TY+T++ 
Sbjct: 538 YKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIK---VHGLVPTSV-TYTTLMN 593

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            + +         +  +M +  + P  IT++ ++      G + +++ L + M   G  P
Sbjct: 594 GYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFP 653

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    N ++Q+  +A    +AF+L                          ++H       
Sbjct: 654 DQITYNTVIQSFCKAHDLQKAFQLHNQM----------------------LQH------- 684

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNH 548
                             S +P+  TYN+L+   C  Y  +K    L+  ++   +    
Sbjct: 685 ------------------SLQPSPVTYNVLINGLCV-YGNLKDADRLLVTLQDQSIRLTK 725

Query: 549 ISWTILIDACGGSGNVEGAL 568
           +++T +I A    G+V+ AL
Sbjct: 726 VAYTTIIKAHCAKGDVQNAL 745



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/321 (19%), Positives = 134/321 (41%), Gaps = 38/321 (11%)

Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           I +CG C  G+  +S  + E + SQ + L+I  +  L++    +  +   + +   M+ +
Sbjct: 380 ILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVI 439

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  D+ +Y++L+   C  G    A E+Y E+        +  + F  S I+    +   
Sbjct: 440 GLKPDLLTYSVLIHGLCKRGAVEEAIELYEEM----CSKRIYPNSFVCSAIISGLFEKGA 495

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A    + +  + V    I ++ +I+  A  G + +A+  ++++++ G  P     N 
Sbjct: 496 ISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNS 555

Query: 439 LLQACVEACQFDRAFRLFRSWTL------SKTQVALGEDY--DGNTDRISNMEHKDKQSI 490
           L+    +  +   A +L  +  +      S T   L   Y  +G+   + +M H+ +   
Sbjct: 556 LIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAK- 614

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNH 548
                              + KPT  TY +++K  C +   +    L+  M   GL P+ 
Sbjct: 615 -------------------AIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQ 655

Query: 549 ISWTILIDACGGSGNVEGALQ 569
           I++  +I +   + +++ A Q
Sbjct: 656 ITYNTVIQSFCKAHDLQKAFQ 676



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 100/248 (40%), Gaps = 53/248 (21%)

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           + S+N L+   C  G+  +A+  +     +  K  L  DV++Y+ ++     A   + AL
Sbjct: 270 VVSFNALMSGFCKMGSVDVAKSFFC----MMIKYGLLPDVYSYNILLHGLCVAGSMEEAL 325

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           +   DM + GV P+ +T++ L N     GL+  A  + + ML  G  P+     IL+   
Sbjct: 326 EFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGH 385

Query: 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
            +    + +F+L +   LS+                                        
Sbjct: 386 CQMGNIEESFKL-KEKMLSQ---------------------------------------- 404

Query: 504 SFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGS 561
                   K +  TY +L+ + C      +A  L++EM  +GL P+ +++++LI      
Sbjct: 405 ------GLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKR 458

Query: 562 GNVEGALQ 569
           G VE A++
Sbjct: 459 GAVEEAIE 466



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 108/240 (45%), Gaps = 9/240 (3%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           +K  +  A   +D+  K   +  + +   +ID     G+  ++   Y+ +  + ++  I 
Sbjct: 492 EKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIV 551

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            FNSL+        L   +++   ++  G++    +Y  L+   C  G+      ++  +
Sbjct: 552 TFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDM---HSMFDML 608

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
             +EAK + K    TY+ +VK          ++++ + M + G+ P+ IT++++I +   
Sbjct: 609 HEMEAKAI-KPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCK 667

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEAC--QFDRAFRLFRSWTLSKTQVA 467
           A  +++A  L  +MLQ   +P+    N+L+   CV       DR     +  ++  T+VA
Sbjct: 668 AHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVA 727


>gi|168061839|ref|XP_001782893.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665615|gb|EDQ52293.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 713

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 157/351 (44%), Gaps = 39/351 (11%)

Query: 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR--------LLDSGEVEMFVGLM 178
           G +   +G+L+K+ E G+ P      S + ++   C R        ++++  + M +GL 
Sbjct: 72  GSLQRGIGILQKMREAGIHP----QVSAYNVILEGCTRSTRGDINGMMEAHRILMDMGLQ 127

Query: 179 EVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAI-RYACIVPRADILFCN-FVREFGKKRD 236
           +    F + +  L+   RI  +     D   A+ R   IVP  D+  C+  +  FG+ RD
Sbjct: 128 QDSVTFNIIMNALNRVGRIRDV-----DRYWALMRMGRIVP--DLTTCSILINAFGRARD 180

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY----------EDLRSQN 286
                      + +    ++ I  ++I V G  G + +   +           EDL + +
Sbjct: 181 WHKVDLVLAEMETYGIKADLMIYNSLISVYGKAGLFYEVELVVKSLRAEIARREDLGNSS 240

Query: 287 VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           +  ++  +N+L++V   A  L   +  +  M+K GV  D+ +++ L+ A   A +     
Sbjct: 241 LAFDLVTYNTLLDVYGKAGRLDDVIYWFGEMKKSGVQPDVLTFDSLVNAYGKASH----- 295

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
              GEV  L  K   K D+  Y+T++ +F     +  A K+ EDM +AG  P + T++SL
Sbjct: 296 -YDGEVLELFRKYNYKSDLVFYNTLLFMFGKGGHYADAWKILEDMKAAGFMPTSETYNSL 354

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           I A       ++A +  E M   G +P +Q  + LL+A   + Q  +  +L
Sbjct: 355 ILAFGRGSQWQEAENTLERMKANGVKPVAQSFSFLLEAYSLSGQIPKGEKL 405



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 22/211 (10%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
           LK D   Y TI+ V  +A+   +A  V E+ + +G++P+   +  L++     G +++ +
Sbjct: 19  LKPDELVYRTIINVLINARRMNVAEAVFEEFVKSGMSPSHDDYVILMSGYTKCGSLQRGI 78

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFD-----RAFRLFRSWTLSKTQVALGEDYD 473
            + ++M +AG  P     N++L+ C  + + D      A R+     L +  V      +
Sbjct: 79  GILQKMREAGIHPQVSAYNVILEGCTRSTRGDINGMMEAHRILMDMGLQQDSVTFNIIMN 138

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYR 531
              +R+  +   D+              Y +  +     P  TT +IL+ A     D+++
Sbjct: 139 A-LNRVGRIRDVDR--------------YWALMRMGRIVPDLTTCSILINAFGRARDWHK 183

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSG 562
           V  ++ EM T G+  + + +  LI   G +G
Sbjct: 184 VDLVLAEMETYGIKADLMIYNSLISVYGKAG 214



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 150/346 (43%), Gaps = 72/346 (20%)

Query: 254 PNMYICRTIIDVC-----GICGDYMKSRAIYED--LRSQNVTLNIYVFNSLMNVNAHDLK 306
           P +     I++ C     G     M++  I  D  L+  +VT NI + N+L  V      
Sbjct: 91  PQVSAYNVILEGCTRSTRGDINGMMEAHRILMDMGLQQDSVTFNI-IMNALNRVGRIR-- 147

Query: 307 FTLEVYKNMQKLG-VMADMASYNILLKACCLAGN-----TVLAQ-EIYGEVKHLEAKGVL 359
             ++ Y  + ++G ++ D+ + +IL+ A   A +      VLA+ E YG          +
Sbjct: 148 -DVDRYWALMRMGRIVPDLTTCSILINAFGRARDWHKVDLVLAEMETYG----------I 196

Query: 360 KLDVFTYSTIVKVFADAK-WWQMALKVK---------EDMLSAGVTPNTITWSSLINACA 409
           K D+  Y++++ V+  A  ++++ L VK         ED+ ++ +  + +T+++L++   
Sbjct: 197 KADLMIYNSLISVYGKAGLFYEVELVVKSLRAEIARREDLGNSSLAFDLVTYNTLLDVYG 256

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD-RAFRLFRSWTLSKTQVAL 468
            AG ++  ++ F EM ++G +P+    + L+ A  +A  +D     LFR +         
Sbjct: 257 KAGRLDDVIYWFGEMKKSGVQPDVLTFDSLVNAYGKASHYDGEVLELFRKYN-------- 308

Query: 469 GEDYDGNTDRISNMEHKDKQSITNTPNFV--PNSHYSSFDKRF------SFKPTTTTYNI 520
                          +K      NT  F+     HY+   K         F PT+ TYN 
Sbjct: 309 ---------------YKSDLVFYNTLLFMFGKGGHYADAWKILEDMKAAGFMPTSETYNS 353

Query: 521 LMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           L+ A    + +   +  +  M+  G+ P   S++ L++A   SG +
Sbjct: 354 LILAFGRGSQWQEAENTLERMKANGVKPVAQSFSFLLEAYSLSGQI 399


>gi|357444885|ref|XP_003592720.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481768|gb|AES62971.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 553

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 153/355 (43%), Gaps = 32/355 (9%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   +  +GK  D   A +      K+  +PN+     +++  G  G Y  + AI+  ++
Sbjct: 143 FFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIFRRMQ 202

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYK---NMQKLGVMADMASYNILLKACCLAG 338
           +     + + +  ++   V  +  K   EV+    N +K  +  D   +N+++     +G
Sbjct: 203 TFGPEPSAFTYQIILKTFVQGNKFKEAEEVFDKLLNDEKSPLRPDQKMFNMMIYMYKKSG 262

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           +   A++ +     L A+  +K    TY++++    +   ++    + + M  A + P+ 
Sbjct: 263 SHEKARQTFA----LMAERGIKKATVTYNSLMSFETN---YKEVSNIYDQMQRADLRPDV 315

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           ++++ LINA   A   E+A+ +FEEML AG  P  +  NILL A   +   ++A  +F+S
Sbjct: 316 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQARIVFKS 375

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF---SFKPTT 515
               K       D    T  +S        +  N P+         F KR     F+P  
Sbjct: 376 MRRDKYM----PDLCSYTTMLS--------AYVNAPDM---EGAEKFFKRLIQDGFEPNV 420

Query: 516 TTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            TY  L+K  A   D  +V     EM   G+  N    T ++DA G +G+ + A+
Sbjct: 421 VTYGTLIKGYAKANDIEKVMEKYEEMLGRGIKANQTILTTIMDAHGKNGDFDSAV 475



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 6/194 (3%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN 328
           +Y +   IY+ ++  ++  ++  +  L+N    A   +  L V++ M   GV     +YN
Sbjct: 295 NYKEVSNIYDQMQRADLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTRKAYN 354

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           ILL A  ++G    A+ ++  ++    +     D+ +Y+T++  + +A   + A K  + 
Sbjct: 355 ILLDAFSISGMVEQARIVFKSMR----RDKYMPDLCSYTTMLSAYVNAPDMEGAEKFFKR 410

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           ++  G  PN +T+ +LI   A A  +E+ M  +EEML  G + N      ++ A  +   
Sbjct: 411 LIQDGFEPNVVTYGTLIKGYAKANDIEKVMEKYEEMLGRGIKANQTILTTIMDAHGKNGD 470

Query: 449 FDRAFRLFRSWTLS 462
           FD A   F+   L+
Sbjct: 471 FDSAVNWFKEMALN 484



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 98/201 (48%), Gaps = 10/201 (4%)

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303
           YD  ++    P++     +I+  G      ++ A++E++    V      +N L++  A 
Sbjct: 303 YDQMQRADLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLD--AF 360

Query: 304 DLKFTLE----VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
            +   +E    V+K+M++   M D+ SY  +L A   A +   A++ +   K L   G  
Sbjct: 361 SISGMVEQARIVFKSMRRDKYMPDLCSYTTMLSAYVNAPDMEGAEKFF---KRLIQDG-F 416

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           + +V TY T++K +A A   +  ++  E+ML  G+  N    +++++A    G  + A++
Sbjct: 417 EPNVVTYGTLIKGYAKANDIEKVMEKYEEMLGRGIKANQTILTTIMDAHGKNGDFDSAVN 476

Query: 420 LFEEMLQAGCEPNSQCCNILL 440
            F+EM   G  P+ +  NILL
Sbjct: 477 WFKEMALNGLLPDQKAKNILL 497


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 114/294 (38%), Gaps = 55/294 (18%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           + ED+    V L+  VF ++M+      DL      +  MQK G+ AD  +Y  L+   C
Sbjct: 342 VVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLC 401

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            AG    A+ +  E   +E KG L +D  TY+ ++  +        A  V   M+   VT
Sbjct: 402 RAGELKEAERVLQE---MEDKG-LDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVT 457

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++L +     G V  A  L  EM   G E N    N L+    +A   ++A R 
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR- 516

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
                   T + + E                                         KP  
Sbjct: 517 --------TMIDMDEA--------------------------------------GLKPDV 530

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            TY  ++ A C   +  R  +L+ EM   G+ P  +++ +L++    SG VEG 
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGG 584



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 9/184 (4%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G C  G   ++  ++  +  + VT N+  + +L +      D+    E+   M   G+  
Sbjct: 434 GYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLEL 493

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           ++ +YN L+   C AGN  L Q +   +   EA   LK DV+TY+TI+     +K    A
Sbjct: 494 NIFTYNSLINGLCKAGN--LEQAMRTMIDMDEAG--LKPDVYTYTTIIGALCQSKELDRA 549

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL-Q 441
             + ++ML  G+ P  +T++ L+N    +G VE    L E ML+    PN+   N L+ Q
Sbjct: 550 HSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609

Query: 442 ACVE 445
            C+E
Sbjct: 610 YCIE 613



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 11/215 (5%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           +PN+     + D  G+C  GD   +  +  ++ S+ + LNI+ +NSL+N    A +L+  
Sbjct: 457 TPNVVTYTALSD--GLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQA 514

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +    +M + G+  D+ +Y  ++ A C +     A  +  E+     KG+ K  + TY+ 
Sbjct: 515 MRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLD---KGI-KPTIVTYNV 570

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F  +   +   ++ E ML   + PNT T++SL+        ++    +++ ML   
Sbjct: 571 LMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQE 630

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
             PN    NIL++   +A     A   F S  + K
Sbjct: 631 VVPNENTYNILIKGHCKARNMKEAL-YFHSEMIEK 664



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 107/275 (38%), Gaps = 44/275 (16%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGE-----------------------------VKHLEAK 356
           SYNILLKA C AG    A +++ E                             +  + A+
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G L+L+   Y++++ +  D      A++V EDM+  GV  +   ++++++     G +  
Sbjct: 315 G-LELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAA 373

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476
           A + F+EM + G   +      L+     A +   A R+ +            ED   + 
Sbjct: 374 ARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEM----------EDKGLDV 423

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKA 534
           D ++     D              H     KR +  P   TY  L    C   D      
Sbjct: 424 DAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVT--PNVVTYTALSDGLCKQGDVCAANE 481

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L++EM + GL  N  ++  LI+    +GN+E A++
Sbjct: 482 LLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR 516



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 14/177 (7%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++Y   TII       +  ++ ++ +++  + +   I  +N LMN    +  ++    +
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF----TYS 367
            + M +  +  +  +YN L+K  C+  N     EIY        KG+L  +V     TY+
Sbjct: 588 LEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIY--------KGMLSQEVVPNENTYN 639

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            ++K    A+  + AL    +M+  G      ++++LI          +A  LFE+M
Sbjct: 640 ILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 106/267 (39%), Gaps = 53/267 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+ + + G  A +  +NIL+   C  G+  JAQ ++  +     K  L+  V 
Sbjct: 123 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAI----TKWGLRPSVV 178

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  ML++GV P+  T+S LIN        + A  LF+EM
Sbjct: 179 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEM 238

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  ++                            
Sbjct: 239 LVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIY---------------------------- 270

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  +   L++EM   
Sbjct: 271 --KQMLSQ-----------------SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXK 311

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
           GL P+ I++T LID C   G+++ A +
Sbjct: 312 GLKPDKITYTTLIDGCCKEGDLDXAFE 338



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 128/292 (43%), Gaps = 20/292 (6%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++++++ +    +  ++  +N+LMN  +   DL     +   M   GV  D+ +Y
Sbjct: 156 GDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 215

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           ++L+   C       A E++ E   +  KG++  +   ++T++          +A+++ +
Sbjct: 216 SVLINGXCKESKXDDANELFDE---MLVKGLVP-NXVXFTTLIDGHCKNGRVDLAMEIYK 271

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            MLS  ++P+ IT+++LI      G ++QA HL +EM   G +P+      L+  C +  
Sbjct: 272 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEG 331

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
             D AF   +       ++    D    T  IS +  + +         V          
Sbjct: 332 DLDXAFEHXKRMIQENXRL----DXVXYTALISGLCXEGRS--------VDAEKMLREML 379

Query: 508 RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
               KP   TY +++   C   D ++   L+ EM+  G  P+ +++ +L++ 
Sbjct: 380 SVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 143/357 (40%), Gaps = 33/357 (9%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DJ +F   +  + +   L  A+  Y  + +H        CR +++       +     
Sbjct: 69  RSDJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YE++       ++Y FN LM+      D++    V+  + K G+   + SYN L+    
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 189 RLGDL---DEGFRLKSAMLASGV-QPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLV 244

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN + +++LI+     G V+ AM ++++ML     P+    N L+    +     +A  L
Sbjct: 245 PNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 304

Query: 456 FRSWT---LSKTQVALGEDYDG---NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
               +   L   ++      DG     D     EH  +    N                 
Sbjct: 305 IDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENX---------------- 348

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
             +     Y  L+   C +   V A  ++ EM +VGL P+  ++T++I+     G+V
Sbjct: 349 --RLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 403



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +  IY+ + SQ+++ ++  +N+L+       DLK   
Sbjct: 245 PNXVXFTTLID--GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 302

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +   M   G+  D  +Y  L+  CC  G+   A E     K +  +   +LD   Y+ +
Sbjct: 303 HLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFE---HXKRMIQENX-RLDXVXYTAL 358

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +MLS G+ P+  T++ +IN     G V +   L +EM + G 
Sbjct: 359 ISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 430 EPNSQCCNILLQA 442
            P+    N+L+  
Sbjct: 419 VPSVVTYNVLMNG 431


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 138/310 (44%), Gaps = 37/310 (11%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   ++   ++++    +  N  ++  L+N    A +L   L +++++  LGV+ D+ + 
Sbjct: 468 GKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTC 527

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           +  +      G    A +++ E+K    KG++  DVFTYS+++  F      + A ++ +
Sbjct: 528 SAFIHGLLKNGRVQEALKVFSELKE---KGLVP-DVFTYSSLISGFCKQGEVEKAFELHD 583

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M   G+ PN   +++L++    +G +++A  LF+ M + G EP+S   + ++    ++ 
Sbjct: 584 EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 643

Query: 448 QFDRAFRLFRSWTLSKTQ--------VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
               AF LF        Q        +  G   +G+ ++  N+  +  Q           
Sbjct: 644 NVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQ----------- 692

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
                  K F+   TT ++N L+   C          L  EM    + P+H+++T +ID 
Sbjct: 693 -------KGFA---TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDW 742

Query: 558 CGGSGNVEGA 567
              +G +E A
Sbjct: 743 HCKAGKMEEA 752



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 95/469 (20%), Positives = 181/469 (38%), Gaps = 79/469 (16%)

Query: 137 KKLNELGVAPLELFDGSGFKLLKNECQRLLDS----GEVEMFVGLMEVLEEFRLPVKELD 192
           K++NE  +   E    +G K   N C  L+D     G+++  + + +V+    +P+  + 
Sbjct: 223 KRMNEAKLT-FEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLIT 281

Query: 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADIL--------------FCNFVREFGKKRDLV 238
               I  LC          ++  +   A+IL              FC  +  + ++ ++ 
Sbjct: 282 YNVLIHGLC----------KFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMG 331

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
            AL   D  +K    P+      +I+    C D   +  + E +    +  N+ V+++L+
Sbjct: 332 RALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLI 391

Query: 299 NVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
              A +  ++    +   M   GV  D+  YN ++     AG     +E    +  ++ +
Sbjct: 392 MGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKM---EEASTYLLEIQGR 448

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G LK D  T+   +  ++       A K  ++ML  G+ PN   ++ LIN    AG + +
Sbjct: 449 G-LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME 507

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476
           A+ +F  +   G  P+ Q C+  +   ++  +   A ++F                    
Sbjct: 508 ALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFS------------------- 548

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSF------DKRFSFK---------PTTTTYNIL 521
                 E K+K  + +   F  +S  S F      +K F            P    YN L
Sbjct: 549 ------ELKEKGLVPDV--FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNAL 600

Query: 522 MKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           +   C   D  R + L + M   GL P+ ++++ +ID    S NV  A 
Sbjct: 601 VDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAF 649



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 74/377 (19%), Positives = 169/377 (44%), Gaps = 37/377 (9%)

Query: 221 DILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRA 277
           D+  C+ F+    K   +  AL+ +   K+    P+++   ++I   G C  G+  K+  
Sbjct: 523 DVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS--GFCKQGEVEKAFE 580

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++++  + +  NI+++N+L++    + D++   +++  M + G+  D  +Y+ ++   C
Sbjct: 581 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC 640

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            + N   A  ++ E   + +KGV +   F Y+ +V         + A+ +  +ML  G  
Sbjct: 641 KSENVAEAFSLFHE---MPSKGV-QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA 696

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
             T+++++LI+    +  +++A  LF+EM+     P+      ++    +A + + A  L
Sbjct: 697 -TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLL 755

Query: 456 FRSW--------TLSKTQVALGEDYDGNTDRI----SNMEHKDKQSITNTPNFVPNSHYS 503
           F+          T++ T +  G +  G +  +      M  K  +    T   V  +H  
Sbjct: 756 FKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCK 815

Query: 504 SFDKRFSFK-----------PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHIS 550
             +   +FK              T +++L+ A C   D      L++EM  +GL P+  +
Sbjct: 816 EDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAA 875

Query: 551 WTILIDACGGSGNVEGA 567
            + L+ +   +G ++ A
Sbjct: 876 CSTLVRSFHEAGKMDEA 892



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 110/260 (42%), Gaps = 24/260 (9%)

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           ++M + G++ +  +Y I+    C A     A+  + E++    K  LK D    S ++  
Sbjct: 198 RSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQ----KTGLKPDYNACSALIDG 253

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           F         L++K+ M+S G+  N IT++ LI+     G +E+A  + + M+  GC+PN
Sbjct: 254 FMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPN 313

Query: 433 SQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           S+   +L++         RA  L        L  + V+ G         I+ + H    S
Sbjct: 314 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGA-------MINGLCHCKDLS 366

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPN 547
           + N    +    +S        KP    Y+ L+    ++      + L++ M   G++P+
Sbjct: 367 LAN--KLLEKMTFS------GLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPD 418

Query: 548 HISWTILIDACGGSGNVEGA 567
              +  +I     +G +E A
Sbjct: 419 IFCYNAIISCLSKAGKMEEA 438



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/381 (18%), Positives = 149/381 (39%), Gaps = 63/381 (16%)

Query: 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183
           ++ GR+   + V  +L E G+ P ++F  S   L+   C++    GEVE    L +    
Sbjct: 535 LKNGRVQEALKVFSELKEKGLVP-DVFTYS--SLISGFCKQ----GEVEKAFELHD---- 583

Query: 184 FRLPVKELDEEFRIVQLCVN----KPDVNLAIRYACIVPRA-----DILFCNFVREFGKK 234
             + +K +     I    V+      D+  A +    +P        + +   +  + K 
Sbjct: 584 -EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKS 642

Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
            ++  A   +         P+ ++   ++  C   GD  K+  ++ ++  +     +  F
Sbjct: 643 ENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SF 701

Query: 295 NSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           N+L++      K     ++++ M    +M D  +Y  ++   C AG    A  ++ E++ 
Sbjct: 702 NTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQE 761

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANA 411
                 L +D  TY++++  +           + E M++ GV P+ +T+  +I A C   
Sbjct: 762 RN----LIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKED 817

Query: 412 GLVE----------------------------------QAMHLFEEMLQAGCEPNSQCCN 437
            LVE                                  +A  L +EM + G +P+   C+
Sbjct: 818 NLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACS 877

Query: 438 ILLQACVEACQFDRAFRLFRS 458
            L+++  EA + D A R+F  
Sbjct: 878 TLVRSFHEAGKMDEATRVFEG 898



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 35/206 (16%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313
           P+     T+ID     G   ++  ++++++ +N+ ++   + SLM    + L  + EV+ 
Sbjct: 731 PDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLM-YGYNKLGQSSEVFA 789

Query: 314 NMQKL---GVMADMASYNILLKACCLAGNTVLAQEIYGEV--KHLEAKGV---------- 358
             +K+   GV  D  +Y +++ A C   N V A ++  EV  K +  KG           
Sbjct: 790 LFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALC 849

Query: 359 -------------------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
                              LK  +   ST+V+ F +A     A +V E + S G+ P+T 
Sbjct: 850 KREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTT 909

Query: 400 TWSSLINACANAGLVEQAMHLFEEML 425
           T   L+N   N    E A +L ++++
Sbjct: 910 TLIDLVNGNLNDTDSEDARNLIKQLV 935


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 140/333 (42%), Gaps = 29/333 (8%)

Query: 234 KRDLVS-ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           K+ LV  AL      +     PN+Y    ++D  G C  G   ++  +  ++ +  +  N
Sbjct: 395 KKGLVGLALEVLRDMRNKGCKPNVYSYTILVD--GFCKLGKIDEAYNLLNEMSADGLKPN 452

Query: 291 IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
              FN L++     H +   +E+++ M + G   D+ ++N L+   C       A  +  
Sbjct: 453 TVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWL-- 510

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            ++ + ++GV+  +  TY+T++  F      + A K+  +M+  G   + IT++SLI   
Sbjct: 511 -LRDMISEGVVA-NTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGL 568

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL--SKTQV 466
             AG V++A  LFE+ML+ G  P+S  CNIL+     +   + A    +   L  S   +
Sbjct: 569 CRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDI 628

Query: 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
                      R   +E             +P              P T TYN LM   C
Sbjct: 629 VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIP--------------PDTVTYNTLMSWLC 674

Query: 527 TDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
              +   A  L++E    G  PN  +W+IL+ +
Sbjct: 675 KGGFVYDACLLLDEGIEDGFVPNDRTWSILLQS 707



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 119/254 (46%), Gaps = 20/254 (7%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G++ D+ +YN L+      G   LA E+   ++ +  KG  K +V++Y+ +V  F     
Sbjct: 378 GIVPDVCTYNSLIYGYWKKGLVGLALEV---LRDMRNKGC-KPNVYSYTILVDGFCKLGK 433

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A  +  +M + G+ PNT+ ++ LI+A      + +A+ +F EM + GC+P+    N 
Sbjct: 434 IDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNS 493

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR-ISNMEHKDKQSITNTPNFV 497
           L+    E  +   A  L R   +S+  VA    Y+   +  +   E K+ + + N   F 
Sbjct: 494 LISGLCEVDEIKHALWLLRD-MISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF- 551

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILI 555
                S  D+         TYN L+K  C   +  + ++L  +M   GL P+ IS  ILI
Sbjct: 552 ---QGSLLDE--------ITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILI 600

Query: 556 DACGGSGNVEGALQ 569
           +    SG VE A++
Sbjct: 601 NGLCRSGMVEEAVE 614



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 92/230 (40%), Gaps = 28/230 (12%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           +FT+  ++K          AL V  DM   G  PN++ + +LI++ +    V +A+ L E
Sbjct: 211 LFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLE 270

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRA-----------FRLFRSWTLSKTQVALGED 471
           EM   GC P+++  N      +  C+FDR             R F    ++   +  G  
Sbjct: 271 EMFLMGCVPDAETFN---DVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLC 327

Query: 472 YDGNTDRISNMEH---KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
             G  D   ++ +   K    I NT      +H    D +       T+Y I+   C  +
Sbjct: 328 KIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYN 387

Query: 529 Y----YRVKAL-------MNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                Y  K L       + +MR  G  PN  S+TIL+D     G ++ A
Sbjct: 388 SLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 437



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 112/263 (42%), Gaps = 37/263 (14%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY--ED 281
           F   +  F K+  +  A+  +    +    P++Y   ++I   G+C       A++   D
Sbjct: 456 FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLIS--GLCEVDEIKHALWLLRD 513

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S+ V  N   +N+L+N  +   ++K   ++   M   G + D  +YN L+K  C AG 
Sbjct: 514 MISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGE 573

Query: 340 TVLAQEIYG----------------------------EVKHLEAKGVLK---LDVFTYST 368
              A+ ++                             E    + + VL+    D+ T+++
Sbjct: 574 VDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS 633

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++     A   +  L +   + + G+ P+T+T+++L++     G V  A  L +E ++ G
Sbjct: 634 LINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDG 693

Query: 429 CEPNSQCCNILLQACVEACQFDR 451
             PN +  +ILLQ+ V     DR
Sbjct: 694 FVPNDRTWSILLQSLVPQETLDR 716



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 131/336 (38%), Gaps = 29/336 (8%)

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS-L 297
           SAL       KH   PN  I +T+I     C    ++  + E++       +   FN  +
Sbjct: 229 SALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVI 288

Query: 298 MNVNAHD-LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           + +   D +    ++   M   G   D  +Y  L+   C  G    A++++  +      
Sbjct: 289 LGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----- 343

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNTITWSSLINACANAGLVE 415
              K     ++T++  F        A  V  DM+++ G+ P+  T++SLI      GLV 
Sbjct: 344 ---KPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVG 400

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
            A+ +  +M   GC+PN     IL+    +  + D A+ L    +       L  +  G 
Sbjct: 401 LALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSAD----GLKPNTVGF 456

Query: 476 TDRISNM--EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYR 531
              IS    EH+  +++                 R   KP   T+N L+   C   +   
Sbjct: 457 NCLISAFCKEHRIPEAVEIFREM----------PRKGCKPDVYTFNSLISGLCEVDEIKH 506

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              L+ +M + G+  N +++  LI+A    G ++ A
Sbjct: 507 ALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 542


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 137/320 (42%), Gaps = 34/320 (10%)

Query: 279 YEDLRSQN-VTLNIYVFNSLMNVNAHDLKFTLEV---YKNMQKLGVMADMASYNILLKAC 334
           + D+ SQ+ + + ++ +++L+ ++   L  T  V   Y  M   GV  ++  YN ++ A 
Sbjct: 167 FLDMLSQSGLRMGLFAYSALL-IHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINAL 225

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C  GN   A+ I  +V   E    +  D FTY++++           AL+V   M   G 
Sbjct: 226 CKDGNVADAETIMKKVFESE----MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGC 281

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PNT+T+S+LIN   ++G V +A  L  EM+  G  P +  C   + A  +   ++ A+R
Sbjct: 282 EPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWR 341

Query: 455 LF--------RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI----TNTPNFVPNSHY 502
           LF             + T +  G    G       + H+  +      T T N + N   
Sbjct: 342 LFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILV 401

Query: 503 SSFDKRFSF-----------KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549
            +   +++F            P   TYN ++K  C   D  +   +MN M   G S N +
Sbjct: 402 ENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLV 461

Query: 550 SWTILIDACGGSGNVEGALQ 569
           ++  +I     SGN   AL+
Sbjct: 462 TYNTIIKGYCDSGNTTSALR 481



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 122/289 (42%), Gaps = 32/289 (11%)

Query: 290 NIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           NI  +N ++       D K  + V  NM + G  A++ +YN ++K  C +GNT  A  I 
Sbjct: 424 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL 483

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
                L   G  K D ++Y+ ++  F      + A  +  +M+  G+ PN +T+++LI+ 
Sbjct: 484 ----DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDG 539

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
                 ++ A  L E M ++GC PN Q  N+L+    +   F  A  L         +V 
Sbjct: 540 YCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL--------CKVM 591

Query: 468 LGEDYDGN----TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK--PTTTTYNIL 521
           + E    N    T  I  +      S+              F+K       P   TY+ L
Sbjct: 592 IEEGIFPNVVTYTAMIDGLCKNGSTSLA----------LEMFNKMIEQGCLPNLLTYSSL 641

Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           ++A   +      + L  E+   GL P+ I++  +I+A   SG VE A 
Sbjct: 642 IRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAF 690



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 132/313 (42%), Gaps = 28/313 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEV 311
           PN+ I   +I+     G+   +  I + +    ++ + + + S++  +   HDL   L+V
Sbjct: 213 PNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQV 272

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M K G   +  +Y+ L+   C +G      E +  ++ +   G+L     T +  + 
Sbjct: 273 FNQMAKEGCEPNTVTYSTLINGLCDSGRV---NEAFDLIREMILHGILP-TAHTCTGPII 328

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
              D   ++ A ++  DM + G  PN  T+++LI+    +G+++ A+ LF  M + G  P
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFP 388

Query: 432 NSQCCNILLQACVEACQFDRAF---RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           N+   N L+   VE  +   AF    L      S   V   E   G       +    K+
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC-----ILGDPKK 443

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
           ++    N +   H ++            TYN ++K  C       AL  ++ MR  G  P
Sbjct: 444 AMLVMNNMLQRGHSANL----------VTYNTIIKGYCDSGNTTSALRILDLMRDGGCKP 493

Query: 547 NHISWTILIDACG 559
           +  S+T LI  CG
Sbjct: 494 DEWSYTELI--CG 504



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 133/332 (40%), Gaps = 20/332 (6%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A R +   K     PN+Y    +I    + G    +  ++  +    V  N   +N+L+N
Sbjct: 339 AWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALIN 398

Query: 300 VNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
           +   +  +K+   V   M + G   ++ +YN ++K  C+ G+   A  +   + ++  +G
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV---MNNMLQRG 455

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
               ++ TY+TI+K + D+     AL++ + M   G  P+  +++ LI        +E A
Sbjct: 456 H-SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESA 514

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
             LF EM+  G  PN      L+    +  + D A  L      S  +         N  
Sbjct: 515 FGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRP--------NVQ 566

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL-- 535
             + + H     +T   NF                P   TY  ++   C +     AL  
Sbjct: 567 TYNVLIH----GLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            N+M   G  PN ++++ LI A G  G VE A
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEA 654



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 141/324 (43%), Gaps = 28/324 (8%)

Query: 254 PNMYICR-TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           P  + C   II +C + G Y  +  ++ D++++    N+Y + +L++    +  LK  + 
Sbjct: 318 PTAHTCTGPIIALCDM-GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIG 376

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M + GV  +  +YN L+    L  N  +       V +L  +     ++ TY+ ++
Sbjct: 377 LFHRMSRDGVFPNTVTYNALINI--LVENRRIKYAFV--VLNLMGRNGCSPNIVTYNEMI 432

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           K +      + A+ V  +ML  G + N +T++++I    ++G    A+ + + M   GC+
Sbjct: 433 KGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 492

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDK 487
           P+      L+    +  + + AF LF       L   +V      DG          KD+
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYC--------KDE 544

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLS 545
           +  T T       H     KR   +P   TYN+L+       ++   + L   M   G+ 
Sbjct: 545 KLDTATSLL---EHM----KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
           PN +++T +ID    +G+   AL+
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALE 621



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 124/286 (43%), Gaps = 11/286 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSR-AIY 279
           + +   ++ +    +  SALR  D  +     P+ +    +I  CG C    M+S   ++
Sbjct: 461 VTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI--CGFCKISKMESAFGLF 518

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLA 337
            ++    +  N   + +L++    D K      + ++M++ G   ++ +YN+L+      
Sbjct: 519 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            N   A+E+    K +  +G+   +V TY+ ++          +AL++   M+  G  PN
Sbjct: 579 NNFSGAEEL---CKVMIEEGIFP-NVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +T+SSLI A    G VE+A +LF E+ + G  P+      +++A + + + + AF    
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
               +  Q  L   Y      + N      Q +   P+ VPN  + 
Sbjct: 695 RMIKAGCQPTLWT-YGVLIKGLKNEYLLADQRLAALPDVVPNCSFG 739



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 139/350 (39%), Gaps = 42/350 (12%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--------DYMKSRAIYEDLRS 284
           +K DL SAL+ ++   K    PN     T+I+  G+C         D ++   ++  L +
Sbjct: 262 RKHDLDSALQVFNQMAKEGCEPNTVTYSTLIN--GLCDSGRVNEAFDLIREMILHGILPT 319

Query: 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
            +      +  +L ++  ++  + L  + +M+  G   ++ +Y  L+   C++G   +A 
Sbjct: 320 AHTCTGPII--ALCDMGCYEDAWRL--FVDMKNKGCEPNVYTYTALISGLCVSGILKVA- 374

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
              G    +   GV   +  TY+ ++ +  + +  + A  V   M   G +PN +T++ +
Sbjct: 375 --IGLFHRMSRDGVFP-NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR---LFRSWTL 461
           I      G  ++AM +   MLQ G   N    N +++   ++     A R   L R    
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 491

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYN 519
              + +  E   G   +IS ME                S +  F++       P   TY 
Sbjct: 492 KPDEWSYTELICGFC-KISKME----------------SAFGLFNEMVDDGLCPNEVTYT 534

Query: 520 ILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            L+   C D       +L+  M+  G  PN  ++ +LI       N  GA
Sbjct: 535 ALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGA 584


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 133/311 (42%), Gaps = 36/311 (11%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMA 325
           GD + +++++  ++   +T +I  +NSL++    +   D  F L  ++ M+ +G   D+ 
Sbjct: 266 GDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCL--FEEMKDVGCEPDVI 323

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +YN L+   C       A     E+K+      LK +V TYST++         Q A+K 
Sbjct: 324 TYNALINCFCKYEQMPKAFHFLHEMKN----SGLKPNVVTYSTLIDALCKEHMLQQAIKF 379

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             DM   G++PN  T++SLI+A   AG +  A+ L +EMLQ     N      LL    +
Sbjct: 380 LLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCK 439

Query: 446 ACQFDRAFRLFRSWTLS------KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
             +   A  LFR+   +      KT  AL   +  N  R+ N     K+           
Sbjct: 440 EGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNK-RVENALELLKEIKEKKI----- 493

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
                       KP    Y  ++   C+       + +M+EM+  G+  N + +TI +DA
Sbjct: 494 ------------KPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDA 541

Query: 558 CGGSGNVEGAL 568
              +G    AL
Sbjct: 542 YFKTGKTVEAL 552



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 138/356 (38%), Gaps = 106/356 (29%)

Query: 227 FVREFGKKRDLVSALRAYDA--SKKHLSSP---------NMYICRTIIDVCGICGDYMKS 275
           F++E    R ++     ++   S +++  P         +++I   +++  G C   M  
Sbjct: 151 FLKELISSRRILPGFDVFEVLWSTRNVCVPGFGVFDALFSVFIELGMLEEAGQCFSRMTR 210

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
             ++   RS N  L       L      DL  + + +++M   G+   + +YNI++   C
Sbjct: 211 FRVFPKARSCNAFLY-----RLAKTGKGDL--SNKFFRDMVGAGIAQSVFTYNIMIGYMC 263

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+ V A+ ++ ++K +                                       G+T
Sbjct: 264 KEGDMVTAKSLFHQMKQM---------------------------------------GLT 284

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +T++SLI+     GL++++  LFEEM   GCEP+    N L+    +  Q  +AF  
Sbjct: 285 PDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHF 344

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
                                       H+ K S                      KP  
Sbjct: 345 L---------------------------HEMKNS--------------------GLKPNV 357

Query: 516 TTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            TY+ L+ A C ++   +A+  + +MR VGLSPN  ++T LIDA   +G +  AL+
Sbjct: 358 VTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALK 413



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 103/215 (47%), Gaps = 6/215 (2%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K+ D+V+A   +   K+   +P++    ++ID  G  G   +S  ++E+++      ++ 
Sbjct: 264 KEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVI 323

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +N+L+N       +         M+  G+  ++ +Y+ L+ A C      + Q+    +
Sbjct: 324 TYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALC---KEHMLQQAIKFL 380

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
             +   G L  + FTY++++     A +   ALK+ ++ML   V  N +T+++L++    
Sbjct: 381 LDMRRVG-LSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCK 439

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            G + +A  LF  M++AG  PN +    L+   ++
Sbjct: 440 EGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIK 474



 Score = 42.0 bits (97), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 17/192 (8%)

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS-QCCNILL 440
           AL + ++M   GV    +T+  LI+     GLVE+A+  F  M     +PN+   C  L+
Sbjct: 551 ALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALI 610

Query: 441 QACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
               +    + A +LF   +   +   ++A     DG      N++HKD Q   N     
Sbjct: 611 DGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDG------NLKHKDFQEALNI---- 660

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
             S  S           T+    L +       R+   +NEM   G+ P+ I    L+  
Sbjct: 661 -RSRMSELGMELDLHAYTSLVWGLSQGNLVQQARM--FLNEMIGKGIVPDEILCIRLLRK 717

Query: 558 CGGSGNVEGALQ 569
               G+++ A++
Sbjct: 718 YYELGSIDEAIE 729



 Score = 39.3 bits (90), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 41/94 (43%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D   Y+ ++      K +Q AL ++  M   G+  +   ++SL+   +   LV+QA    
Sbjct: 637 DKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFL 696

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            EM+  G  P+   C  LL+   E    D A  L
Sbjct: 697 NEMIGKGIVPDEILCIRLLRKYYELGSIDEAIEL 730


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 112/243 (46%), Gaps = 8/243 (3%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
            P +D L   F+    +   L  A  A+       + P++  C   ++     G    +R
Sbjct: 147 TPSSDFLIHTFITSPAQG-SLCRAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAR 205

Query: 277 AIYEDLR-SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
            +++++R S+NV LN Y + +++     A  +    E+   + + G+   + +YN+L+ A
Sbjct: 206 EVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDA 265

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C +G    A  + G ++    +G +   V T+  ++   A  + +     V ++M   G
Sbjct: 266 LCKSGRVEEAFRLKGRME----QGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLG 321

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           V+PN + ++ LI      G   QA+ LF+EM+    +P +   N++ +A  +  + +RA 
Sbjct: 322 VSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAE 381

Query: 454 RLF 456
           R+ 
Sbjct: 382 RIL 384



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 107/230 (46%), Gaps = 13/230 (5%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +CN     GK  +    L   D  K     P++    TIID      D  K++    +L 
Sbjct: 547 YCNL----GKMEETFHLL---DQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELM 599

Query: 284 SQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            + +  N++++N+L+       D+   ++  + M+  G+     +Y  L+   C AG   
Sbjct: 600 DRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVE 659

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A+ I+ + +    +  + L V  Y+ +++ +        A+   E+M S G++PN +T+
Sbjct: 660 EAKTIFSQAR----ENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTY 715

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           ++L+ A + +G  E+A  LF+EM+ +G  P++     L+  C E    D+
Sbjct: 716 TTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDK 765



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 165/419 (39%), Gaps = 85/419 (20%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           ++++   +    +K     ALR +D        P       I       G+  ++  I E
Sbjct: 326 EVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILE 385

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAG 338
           D+ S  +T++  +FN+++   A  L+ T  LE   ++    V   M   + L+ AC    
Sbjct: 386 DMLSIGMTVHCGLFNTVV---AWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTAC---- 438

Query: 339 NTVLAQEIYGEVKHLEAKGV--------LKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
                +E+    KH EA G+        L +++ T + ++    + K+ + A KV + ML
Sbjct: 439 ----MRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQTML 494

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
           + G+  ++IT++ +I  C     +E+A+ L  +M + G +P+    N LL A     + +
Sbjct: 495 NKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKME 554

Query: 451 RAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN------TPN-FVPNS 500
             F L    ++  L    V+ G   DG+    +    K K+ +T        PN F+ N+
Sbjct: 555 ETFHLLDQMKTEGLQPDIVSYGTIIDGHCK--AKDIRKAKEYLTELMDRGLKPNVFIYNA 612

Query: 501 HYSSFD---------------KRFSFKPTTTTYNILMKACC---------TDYYRVK--- 533
               +                K    +PT  TY  LM   C         T + + +   
Sbjct: 613 LIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENN 672

Query: 534 -------------------------ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                                    A   EMR+ G+SPN +++T L+ A   SGN E A
Sbjct: 673 VDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEA 731



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 95/233 (40%), Gaps = 43/233 (18%)

Query: 263 IDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           I + G C D     AI  + D+  +    +++ FN+L++   N   ++ T  +   M+  
Sbjct: 507 IMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTE 566

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  D+ SY  ++   C A +   A+E   E   L  +G LK +VF Y+ ++  +     
Sbjct: 567 GLQPDIVSYGTIIDGHCKAKDIRKAKEYLTE---LMDRG-LKPNVFIYNALIGGYGRNGD 622

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF----------------- 421
              A+   E M S G+ P  +T+ SL+    +AGLVE+A  +F                 
Sbjct: 623 ISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTI 682

Query: 422 ------------------EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
                             EEM   G  PN      L+ A  ++   + A +LF
Sbjct: 683 MIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLF 735



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 88/188 (46%), Gaps = 6/188 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           PN++I   +I   G  GD   +    E ++S  +      + SLM    H   ++    +
Sbjct: 605 PNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTI 664

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +   ++  V   +  Y I+++  C  G  V A   + E++   ++G+   +  TY+T++ 
Sbjct: 665 FSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMR---SRGI-SPNKLTYTTLMY 720

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            ++ +   + A K+ ++M+ +GV P+ IT+ +LI  C+    +++ +    E+       
Sbjct: 721 AYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDKDIGHTAELSSGALTK 780

Query: 432 NSQCCNIL 439
           + +  NIL
Sbjct: 781 DDRMYNIL 788


>gi|357144696|ref|XP_003573383.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Brachypodium distachyon]
          Length = 606

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 117/316 (37%), Gaps = 89/316 (28%)

Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305
           + K+    P+  +   +I +    GDY ++R ++  +  + +  +   FNSLM+    D 
Sbjct: 239 SEKRTFFKPDQKMFHMMIYMYKKSGDYAQARKLFAQMSERGIPQSTVTFNSLMSFEG-DY 297

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           K    +Y  MQ+ G                                       LK DV +
Sbjct: 298 KEVSSIYDQMQRAG---------------------------------------LKPDVVS 318

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           YS ++K +  A+  + A  V E+ML AG+ P   +++ L++A A +GLVE+A  +F+ M 
Sbjct: 319 YSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQTVFKTMR 378

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
           +   EP+      +L A V A   D A + FR                    RI      
Sbjct: 379 RHRVEPDLCSYTTMLLAYVNASDMDGAEKFFR--------------------RI------ 412

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVG 543
                                K    +P    Y  LMK      +  +V  +   MR  G
Sbjct: 413 ---------------------KEDGLRPNVVVYGTLMKGYSKLDNVEKVMRVYERMRMQG 451

Query: 544 LSPNHISWTILIDACG 559
           + PN   +T ++D  G
Sbjct: 452 VEPNQTIFTTIMDVHG 467



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 103/226 (45%), Gaps = 9/226 (3%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           +P++ + F + +   G  +++ S    YD  ++    P++     +I   G      ++ 
Sbjct: 280 IPQSTVTFNSLMSFEGDYKEVSSI---YDQMQRAGLKPDVVSYSLLIKAYGKARREEEAS 336

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A++E++    +      +N L++  A    ++    V+K M++  V  D+ SY  +L A 
Sbjct: 337 AVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQTVFKTMRRHRVEPDLCSYTTMLLAY 396

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
             A +   A++ +  +K    +  L+ +V  Y T++K ++     +  ++V E M   GV
Sbjct: 397 VNASDMDGAEKFFRRIK----EDGLRPNVVVYGTLMKGYSKLDNVEKVMRVYERMRMQGV 452

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            PN   ++++++          A+  F EM   G  P+ +  NILL
Sbjct: 453 EPNQTIFTTIMDVHGRNSDFGNAVIWFNEMETRGYPPDKKAKNILL 498



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 12/187 (6%)

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A +V + M   G  P  I+ ++L+ A   A    +A  +F  M  +G EP+     I+L+
Sbjct: 160 AERVLKYMNKKGYRPTVISQTALMEAYGRAKQYRKAEAVFHRMQTSGPEPSPITYQIILK 219

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
           + VE  ++  A  +F    LS+ +     D          M H        + ++     
Sbjct: 220 SLVEGDKYKEAEAIFED-LLSEKRTFFKPD--------QKMFHMMIYMYKKSGDYAQARK 270

Query: 502 -YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560
            ++   +R     +T T+N LM +   DY  V ++ ++M+  GL P+ +S+++LI A G 
Sbjct: 271 LFAQMSER-GIPQSTVTFNSLM-SFEGDYKEVSSIYDQMQRAGLKPDVVSYSLLIKAYGK 328

Query: 561 SGNVEGA 567
           +   E A
Sbjct: 329 ARREEEA 335


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 144/328 (43%), Gaps = 65/328 (19%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED--LRSQNVTLNIYVFNSLMN 299
           RA DA +  L+       R +  V G+ G   +  +I E+  LR       + VFN++M 
Sbjct: 172 RALDAFE-WLARSTAPASRAVAVVLGVLG-RARQDSIAEEVFLRFAGEGATVQVFNAMMG 229

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILL----KACCLAGNTVLAQEIYGEVKHL 353
           V A   +F    ++   M   G+  D+ S+N L+    K+ CLA    L  ++  EV+  
Sbjct: 230 VYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVAL--DLLFEVR-- 285

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
             +  L+ DV TY+T++   + +   + A+ V E+M+++   P+  T++++++     G 
Sbjct: 286 --QSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGK 343

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
            E+A  LF E+++ G  P++   N LL A  +                           +
Sbjct: 344 AEEAERLFGELVEKGFMPDAVTYNSLLYAFAK---------------------------E 376

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN--ILMKACCTDYYR 531
           GN D++   EH  ++ +                 +  FK    TYN  I M         
Sbjct: 377 GNVDKV---EHTCEELV-----------------KAGFKKNEITYNTMIHMYGKMGRLDL 416

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACG 559
              L +EMR VG +P+ +++T++ID+ G
Sbjct: 417 AVGLYDEMRAVGCTPDAVTYTVMIDSLG 444



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 132/299 (44%), Gaps = 16/299 (5%)

Query: 262  IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF-TLEVY-KNMQKLG 319
            ++D     GD  +   IY  +++     N++++ S+ ++  H  +F  +E+    M+  G
Sbjct: 856  MLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAG 915

Query: 320  VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
               D++ +N LL     AGN     ++Y  +  LEA   L+ D  TY+T++ ++  +   
Sbjct: 916  FKPDLSIFNSLLNMYTAAGNFDRTTQVYQSI--LEAG--LEPDEDTYNTLIVMYCRSLRP 971

Query: 380  QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
            +    +  +M   G+TP   ++ SL+ A A A L EQA  LFEEM     + N    +++
Sbjct: 972  EEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSIYHMM 1031

Query: 440  LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
            ++    A    +A  L         +  +   +   T   +  +  + +++ N+      
Sbjct: 1032 MKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPHEAENVLNS------ 1085

Query: 500  SHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
                S     S  P +T ++  +K    D   +K L+ EM+  G+ P+H  WT  I A 
Sbjct: 1086 --LKSSSLEVSTLPYSTVFDAYLKNGDYD-LGIKKLL-EMKRDGVEPDHQVWTCFIRAA 1140



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 12/210 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----NAHDLKFT 308
           P+++    ++ V G CG   ++  ++ +L  +    +   +NSL+       N   ++ T
Sbjct: 326 PDLWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHT 385

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            E    + K G   +  +YN ++      G   LA  +Y E++   A G    D  TY+ 
Sbjct: 386 CE---ELVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMR---AVGCTP-DAVTYTV 438

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++           A KV EDM  AG+ P  + +S+LI A A  G    A   F+ M+ +G
Sbjct: 439 MIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASG 498

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            +P+     ++L     + + ++  RL+R+
Sbjct: 499 VKPDRLAYLVMLDVFARSGETEKMLRLYRT 528



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 123/301 (40%), Gaps = 39/301 (12%)

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            QN  L  ++   L  V A       +V+ +MQ +G+ A    Y  ++   C  G     
Sbjct: 672 GQNCNLYEHLITCL--VEAELFSEACQVFCDMQFIGIEASKNIYESIISTYCKLG---FP 726

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIV-KVFADAKWWQMA-LKVKEDMLSAGVTPNTITW 401
           +  +G +      G+  L++ +   I+ + + + K WQ A + VK    ++G+  +   W
Sbjct: 727 ETAHGLMDDALQSGI-PLNILSCRVIIIEAYGNIKLWQQAEILVKGLRQASGI--DRRIW 783

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF----- 456
           ++LI+A A +GL E+A  +F+ M++ G  P     N +++A +   + D  + +      
Sbjct: 784 NALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQD 843

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH-YSSF------DKRF 509
             + +SK+ V L  D       +   E     +      ++PN H Y S         RF
Sbjct: 844 MDFKISKSTVLLMLDAFAKAGDV--FEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRF 901

Query: 510 -------------SFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTIL 554
                         FKP  + +N L  M     ++ R   +   +   GL P+  ++  L
Sbjct: 902 RDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTL 961

Query: 555 I 555
           I
Sbjct: 962 I 962



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 26/187 (13%)

Query: 278  IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            ++E++RS++  LN  +++ +M +  NA +      +   M++ G+   +A+ +IL+ +  
Sbjct: 1012 LFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYG 1071

Query: 336  LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             AG    A+ +   +K       L++    YST+   +     + + +K   +M   GV 
Sbjct: 1072 TAGQPHEAENVLNSLK----SSSLEVSTLPYSTVFDAYLKNGDYDLGIKKLLEMKRDGVE 1127

Query: 396  PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            P+   W+  I A   A L EQ                     ILL   ++ C FD   RL
Sbjct: 1128 PDHQVWTCFIRA---ASLCEQTAD-----------------AILLLKSLQDCGFDLPIRL 1167

Query: 456  FRSWTLS 462
                T S
Sbjct: 1168 LTERTPS 1174


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 155/353 (43%), Gaps = 44/353 (12%)

Query: 204 KPDV---NLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICR 260
           KPD+   N  I   C   R +  F +F +E  +K      +R           PN+    
Sbjct: 290 KPDIVAYNAIIDSLCKTKRVNDAF-DFFKEIERK-----GIR-----------PNVVTYT 332

Query: 261 TIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQ 316
            +++  G+C     S A  +  D+  + +T N+  +++L++    + K     E+++ M 
Sbjct: 333 ALVN--GLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 390

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           ++ +  D+ +Y+ L+   CL      A +++     + +KG L  DV +Y+T++  F  A
Sbjct: 391 RMSIDPDIVTYSSLINGLCLHDRIDEANQMF---DLMVSKGCLA-DVVSYNTLINGFCKA 446

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
           K  +  +K+  +M   G+  NT+T+++LI     AG V++A   F +M   G  P+    
Sbjct: 447 KRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTY 506

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           NILL    +  + ++A  +F    + K ++ L  D    T  I  M    K         
Sbjct: 507 NILLGGLCDNGELEKALVIFED--MQKREMDL--DIVTYTTVIRGMCKTGKVE------- 555

Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPN 547
              S + S   +   KP   TY  +M   CT    + V+AL  +M+  GL  N
Sbjct: 556 EAWSLFCSLSLK-GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 607



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 18/256 (7%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M ++G   D+ +YN ++ + C    T    + +   K +E KG+ + +V TY+ +V    
Sbjct: 284 MVEIGYKPDIVAYNAIIDSLC---KTKRVNDAFDFFKEIERKGI-RPNVVTYTALVNGLC 339

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           ++  W  A ++  DM+   +TPN IT+S+L++A    G V +A  LFEEM++   +P+  
Sbjct: 340 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 399

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             + L+      C  DR     + + L  ++  L +    NT  + N   K K+      
Sbjct: 400 TYSSLING---LCLHDRIDEANQMFDLMVSKGCLADVVSYNT--LINGFCKAKRVEDGMK 454

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWT 552
            F   S              T TYN L++      D  + +   ++M   G+SP+  ++ 
Sbjct: 455 LFREMSQR-------GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 507

Query: 553 ILIDACGGSGNVEGAL 568
           IL+     +G +E AL
Sbjct: 508 ILLGGLCDNGELEKAL 523



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 109/211 (51%), Gaps = 6/211 (2%)

Query: 253  SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHD-LKFTLE 310
            +P+++    +ID     G  +++  +Y+++  +++  +I  ++SL+N    HD L    +
Sbjct: 937  NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ 996

Query: 311  VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            +++ M       D+ +YN L+K  C         E++ E+      G    +  TY+ ++
Sbjct: 997  MFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG----NTVTYNILI 1052

Query: 371  KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            +    A    MA ++ ++M+S GV PN +T+++L++     G +E+AM +FE + ++  E
Sbjct: 1053 QGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 1112

Query: 431  PNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
            P     NI+++   +A + +  + LF + +L
Sbjct: 1113 PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSL 1143



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 143/341 (41%), Gaps = 20/341 (5%)

Query: 233  KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
            K + +  AL  +   +     PN+    ++I      G +  +  +  D+  + +  +++
Sbjct: 882  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 941

Query: 293  VFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
             F++L++    + K     ++Y  M K  +   + +Y+ L+   C+      A++++   
Sbjct: 942  TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF--- 998

Query: 351  KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
            + + +K     DV TY+T++K F   K  +  ++V  +M   G+  NT+T++ LI     
Sbjct: 999  EFMVSKHCFP-DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 1057

Query: 411  AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            AG  + A  +F+EM+  G  PN    N LL    +  + ++A  +F     SK +  +  
Sbjct: 1058 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI-- 1115

Query: 471  DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
             Y  N   I  M    K  + +  +   N            KP    YN ++   C    
Sbjct: 1116 -YTYNI-MIEGMCKAGK--VEDGWDLFCNLSLK------GVKPDVVAYNTMISGFCRKGS 1165

Query: 531  R--VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +    AL  EM+  G  PN   +  LI A    G+ E + +
Sbjct: 1166 KEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAE 1206



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 129/299 (43%), Gaps = 32/299 (10%)

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVM 321
           D   + G+ +KSR             +I  F+ L++  A   KF   + + + MQ LG+ 
Sbjct: 678 DAVALFGEMVKSRPFP----------SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIP 727

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            +  +Y+IL+   C      LA  + G++  L  +     ++ T S+++  +  +K    
Sbjct: 728 HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEP----NIVTLSSLLNGYCHSKRISE 783

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A+ + + M   G  PNT+T+++LI+         +AM L + M+  GC+P+     +++ 
Sbjct: 784 AVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN 843

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              +    D AF L       K +  +   Y+   D +   +H D     +  N      
Sbjct: 844 GLCKRGDTDLAFNLLNKMEQGKLEPGV-LIYNTIIDGLCKYKHMD-----DALNLFKEME 897

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILIDA 557
                     +P   TY+ L+ +C  +Y R      L+++M    ++P+  +++ LIDA
Sbjct: 898 TK------GIRPNVVTYSSLI-SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDA 949



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 6/161 (3%)

Query: 270  GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
            GD   ++ I++++ S  V  NI  +N+L++       L+  + V++ +Q+  +   + +Y
Sbjct: 1059 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 1118

Query: 328  NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            NI+++  C AG      +++    +L  KGV K DV  Y+T++  F      + A  + +
Sbjct: 1119 NIMIEGMCKAGKVEDGWDLFC---NLSLKGV-KPDVVAYNTMISGFCRKGSKEEADALFK 1174

Query: 388  DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            +M   G  PN+  +++LI A    G  E +  L +EM   G
Sbjct: 1175 EMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCG 1215



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 85/216 (39%), Gaps = 50/216 (23%)

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K +E  G+ + D++T++ ++  F       +AL +   ML  G  P+ +T  SL+N    
Sbjct: 212 KKMEVLGI-RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 270

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
              V  A+ L ++M++ G +P+    N ++ +  +  + + AF  F+             
Sbjct: 271 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI----------- 319

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TD 528
                                               +R   +P   TY  L+   C  + 
Sbjct: 320 ------------------------------------ERKGIRPNVVTYTALVNGLCNSSR 343

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           +     L+++M    ++PN I+++ L+DA   +G V
Sbjct: 344 WSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKV 379


>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Vitis vinifera]
          Length = 464

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 19/254 (7%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDL-RSQNVTLNIYV 293
           L  A   +D   +    PN+    T+I   G+CGD     A  + ED+ +  NV  N +V
Sbjct: 164 LGDAWNVFDEMLRKHVCPNVVTFGTLIS--GLCGDSRLDEAFRLKEDMVKVFNVKPNAFV 221

Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           + SLM      ++L    E+ K M    +  D   Y+ L+ A    G      E++  ++
Sbjct: 222 YASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFKVGRK---DEVFVVLE 278

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            +   G  K D  TY+ ++  F + K ++ A  V E+M++ G  P+ I+++ +I+     
Sbjct: 279 EMRENGC-KPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCKE 337

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA--------FRLFRSWTLSK 463
           G   +A  LFE+M + GC P+     IL     E  QF+ A        F+ +   + SK
Sbjct: 338 GKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFKGYAPKSASK 397

Query: 464 TQVALGEDYDGNTD 477
           T+       +GN +
Sbjct: 398 TKFVEALCQEGNLE 411



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 113/273 (41%), Gaps = 41/273 (15%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKK------------------------------- 249
           +I+FCN +  +G+ R    A++ +++  +                               
Sbjct: 79  EIIFCNVISFYGRARLPDRAIQTFESIPEFRCQRTVKSLNSLLNALLKCKEFEKFDGILS 138

Query: 250 ---HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD-- 304
                ++P++     +I+ C   G    +  +++++  ++V  N+  F +L++    D  
Sbjct: 139 GIDKFATPDVCTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCGDSR 198

Query: 305 LKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           L     + ++M K+  V  +   Y  L+K  C      LA E+  E+        L+LD 
Sbjct: 199 LDEAFRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEM----VANKLRLDS 254

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
             YST++              V E+M   G  P+T+T++++I+   N    E A  + EE
Sbjct: 255 GIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEE 314

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           M+  GC+P+    N+++    +  ++  A  LF
Sbjct: 315 MVAKGCKPDVISYNVIISGLCKEGKWREANDLF 347



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 15/204 (7%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           DV TY+ ++     +     A  V ++ML   V PN +T+ +LI+       +++A  L 
Sbjct: 147 DVCTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCGDSRLDEAFRLK 206

Query: 422 EEMLQA-GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
           E+M++    +PN+     L++      +   AF L +    +K ++  G  Y      + 
Sbjct: 207 EDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSG-IYSTLIAALF 265

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNE 538
            +  KD+        FV         +    KP T TYN ++   C   D+     ++ E
Sbjct: 266 KVGRKDEV-------FVVLEEM----RENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEE 314

Query: 539 MRTVGLSPNHISWTILIDACGGSG 562
           M   G  P+ IS+ ++I      G
Sbjct: 315 MVAKGCKPDVISYNVIISGLCKEG 338


>gi|168018631|ref|XP_001761849.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686904|gb|EDQ73290.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 892

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 292 YVFNSLMNVNAHDLKFTLEVYKNMQ-KLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           +V   L +  A  L+ TL ++++++ +  + A    +NIL+ +CC  G+     ++  E+
Sbjct: 369 FVSYILGSSKAKKLEETLGLWRDVEEQCRINAPPEVFNILIDSCCKHGHVSWGLDLLDEM 428

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           +    +G  KL  + ++  +  FA    ++ A ++K  M   GV P+ +T+S+L+N C  
Sbjct: 429 QQ---RGT-KLSPYAFNPFICDFARWGMYEEAFEMKAAMGRLGVQPSVVTYSTLVNCCVK 484

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
            G +EQA +L  EM Q G +PN+ C N L+       + DRA  + R    +  Q
Sbjct: 485 LGDMEQAYNLLAEMKQVGIQPNAHCYNPLIMGFGSQARLDRALEVLREMLSAGVQ 539



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 12/211 (5%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLG 319
           +ID C   G       + ++++ +   L+ Y FN  +   A    +    E+   M +LG
Sbjct: 408 LIDSCCKHGHVSWGLDLLDEMQQRGTKLSPYAFNPFICDFARWGMYEEAFEMKAAMGRLG 467

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           V   + +Y+ L+  C   G+   A  +  E+K +     ++ +   Y+ ++  F      
Sbjct: 468 VQPSVVTYSTLVNCCVKLGDMEQAYNLLAEMKQVG----IQPNAHCYNPLIMGFGSQARL 523

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
             AL+V  +MLSAGV P++ T+S LI AC+     ++A+ LFEEMLQ G +PN+   + +
Sbjct: 524 DRALEVLREMLSAGVQPDSYTYSMLIFACSMVRNEDKAVELFEEMLQRGVQPNAGIYSAM 583

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
                 A  F R  +L RS  + K     GE
Sbjct: 584 ------ASVFARCGKLERSIEMVKEIERRGE 608



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 140/336 (41%), Gaps = 35/336 (10%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL-MNVNAH-DLKFTLE 310
            P++    T+++ C   GD  ++  +  +++   +  N + +N L M   +   L   LE
Sbjct: 469 QPSVVTYSTLVNCCVKLGDMEQAYNLLAEMKQVGIQPNAHCYNPLIMGFGSQARLDRALE 528

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M   GV  D  +Y++L+ AC +  N   A E++ E+     +GV + +   YS + 
Sbjct: 529 VLREMLSAGVQPDSYTYSMLIFACSMVRNEDKAVELFEEMLQ---RGV-QPNAGIYSAMA 584

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            VFA     + ++++ +++   G    T   S+++   + AG + +A+ L+  + + G  
Sbjct: 585 SVFARCGKLERSIEMVKEIERRGEVVGTKAKSAILAGLSLAGRLGEALALYGALKREGAF 644

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRS------WTLSKTQ------------VALGEDY 472
           P +    ILL A  +A   DR F +F        WT    Q            V LG   
Sbjct: 645 PEAYAAGILLVAVGKAGDLDRMFNIFEDCRKENLWTKLTYQQRAEFLNVRCINVVLGCIR 704

Query: 473 DGNTDRISNMEHKDK-QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR 531
                R      K K ++I +            FDK F     +       + C  D   
Sbjct: 705 HNQLGRALEFLRKVKDENIADVAVL--------FDKIFLH--ISNGGRDANEMCWLDVDD 754

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             A++  MR +GLSP+ ++   L+D C    + E A
Sbjct: 755 GFAVVAAMRELGLSPSRMALEALLDGCASMNDSEQA 790


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 128/318 (40%), Gaps = 59/318 (18%)

Query: 257 YICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           Y C  +++  G+C D   S A  + + L +  +     ++N+L+N      +L+     +
Sbjct: 204 YTCSILLN--GLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTF 261

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M+   +  D  +YN L+   C A     AQ++  E   ++  GV    V T++T++  
Sbjct: 262 GQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME---MQDNGV-NPTVETFNTLIDA 317

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +      +    V  +M   G+ PN +++ S++NA    G + +A+ + ++M      PN
Sbjct: 318 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 377

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
           +Q  N ++ A VE    D+AF L                                     
Sbjct: 378 AQVYNAIIDAYVEHGPNDQAFILVEKM--------------------------------- 404

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHIS 550
                         K     P+  TYN+L+K  C  +     + ++N +    L P+ +S
Sbjct: 405 --------------KSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVS 450

Query: 551 WTILIDACGGSGNVEGAL 568
           +  LI AC   GN++ AL
Sbjct: 451 YNTLISACCYRGNIDKAL 468



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 140/327 (42%), Gaps = 23/327 (7%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           ++G++     VL+ L   G+ P  +   +   L+   CQ    +GE+E        ++  
Sbjct: 215 KDGKVSIAEEVLQSLVNAGLVPTRVIYNT---LINGYCQ----TGELEGAFSTFGQMKSR 267

Query: 185 RLPVKELDEEFRIVQLC-----VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS 239
            +    +     I  LC      N  D+ + ++   + P  +  F   +  +G+   L  
Sbjct: 268 HIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVET-FNTLIDAYGRTGQLEK 326

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
                   +++   PN+    +I++     G   ++ AI +D+  ++V  N  V+N++++
Sbjct: 327 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 386

Query: 300 V----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
                  +D  F L   + M+  G+   + +YN+L+K  C       A+EI   + +   
Sbjct: 387 AYVEHGPNDQAFIL--VEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHR- 443

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
              L  D  +Y+T++           AL +++ M   G+     T+  LI+    AG + 
Sbjct: 444 ---LIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLN 500

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +  +L+++M+Q    P++   NI+++A
Sbjct: 501 EMEYLYQKMMQNNVVPSNAIHNIMVEA 527



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 106/254 (41%), Gaps = 21/254 (8%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  ++N  ++AC  AG+     E  G ++ +   G    + F+Y+ ++     A  
Sbjct: 22  GARPDTFAWNKAVQACVAAGDL---GEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGR 78

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A++V ++M    V PN IT++++I+     G +E    L ++M+  G +PN+   N+
Sbjct: 79  GGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNV 138

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           LL     A +      L      S+  V  G  Y    D +S   + D +++        
Sbjct: 139 LLSGLCRAGRMGETSALLDEMA-SQKMVPDGFTYSILFDGLS--RNGDSKAM-------- 187

Query: 499 NSHYSSFDKRFSFKPTTTTY--NILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTIL 554
               S F K      T   Y  +IL+   C D      + ++  +   GL P  + +  L
Sbjct: 188 ---LSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTL 244

Query: 555 IDACGGSGNVEGAL 568
           I+    +G +EGA 
Sbjct: 245 INGYCQTGELEGAF 258



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 129/333 (38%), Gaps = 48/333 (14%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN +    +I      G    +  +++++  + V  N   +N++++  +   DL+    +
Sbjct: 61  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 120

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M   G+  +  +YN+LL   C AG       +  E+    A   +  D FTYS +  
Sbjct: 121 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM----ASQKMVPDGFTYSILFD 176

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
             +     +  L +    L  GVT    T S L+N     G V  A  + + ++ AG  P
Sbjct: 177 GLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 236

Query: 432 NSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG--NTDRISN----- 481
                N L+    +  + + AF  F   +S  +    +      +G    +RI+N     
Sbjct: 237 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 296

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL------ 535
           ME +D                          PT  T+N L+ A    Y R   L      
Sbjct: 297 MEMQDN----------------------GVNPTVETFNTLIDA----YGRTGQLEKCFIV 330

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           ++EM+  GL PN +S+  +++A   +G +  A+
Sbjct: 331 LSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 363


>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
          Length = 831

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 11/209 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN+  C TI++  G C  G   ++   +  ++   V  N++VFNSL+   +N +D+    
Sbjct: 529 PNVRTCGTIVN--GYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVG 586

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           EV   M++ GV  D+ +++ L+ A    G+    +EIY ++     +G +  D+  +S +
Sbjct: 587 EVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDM----LEGGIDPDIHAFSIL 642

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-AG 428
            K +A A   + A ++   M   GV PN + ++ +I+   +AG +++AM ++++M    G
Sbjct: 643 AKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVG 702

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
             PN      L+    EA Q  +A  L +
Sbjct: 703 LSPNLTTYETLIWGFGEAKQPWKAEELLK 731



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/371 (21%), Positives = 146/371 (39%), Gaps = 56/371 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I +   V    +++   S L      +K+   P+  +   II+     G+  ++  I+E 
Sbjct: 355 ITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEK 414

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM-----ASYNILLKACCL 336
           ++          FN+L  +  +     LE    +  + +  +M      + NIL++A C 
Sbjct: 415 MKESGCKPTASTFNTL--IKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC- 471

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM-----LS 391
             N    +E +  V  +++ GV K DV T++T+ K +A       +    EDM     L 
Sbjct: 472 --NQRKIEEAWNIVYKMQSYGV-KPDVVTFNTLAKAYARIG----STCTAEDMIIPRMLH 524

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
             V PN  T  +++N     G +E+A+  F  M + G  PN    N L++  +       
Sbjct: 525 NKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNI----- 579

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR--- 508
                              D DG  + +  ME    +    T + + N+  S  D +   
Sbjct: 580 ------------------NDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCE 621

Query: 509 --------FSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
                       P    ++IL K  A   +  + K ++N+MR  G+ PN + +T +I   
Sbjct: 622 EIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGW 681

Query: 559 GGSGNVEGALQ 569
             +G ++ A+Q
Sbjct: 682 CSAGEMKKAMQ 692



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 17/168 (10%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           K  + TY+T+V      K +   L +   +   G+ P+TI ++++INA + +G ++QAM 
Sbjct: 351 KPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 410

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           +FE+M ++GC+P +   N L++   +  + + + RL          + L ++     DR 
Sbjct: 411 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL--------DMMLRDEMLQPNDRT 462

Query: 480 SNMEHK---DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
            N+  +   +++ I    N V         + +  KP   T+N L KA
Sbjct: 463 CNILVQAWCNQRKIEEAWNIVYKM------QSYGVKPDVVTFNTLAKA 504



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 83/193 (43%), Gaps = 5/193 (2%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +F + ++ F    D+       D  ++    P++    T+++     GD  +   IY D+
Sbjct: 568 VFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDM 627

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
               +  +I+ F+ L      A + +   ++   M+K GV  ++  Y  ++   C AG  
Sbjct: 628 LEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGEM 687

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A ++Y ++  +     L  ++ TY T++  F +AK    A ++ +DM    V P   T
Sbjct: 688 KKAMQVYKKMCGIVG---LSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKT 744

Query: 401 WSSLINACANAGL 413
              + +   + G+
Sbjct: 745 MQLIADGWKSIGV 757


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 137/320 (42%), Gaps = 34/320 (10%)

Query: 279 YEDLRSQN-VTLNIYVFNSLMNVNAHDLKFTLEV---YKNMQKLGVMADMASYNILLKAC 334
           + D+ SQ+ + + ++ +++L+ ++   L  T  V   Y  M   GV  ++  YN ++ A 
Sbjct: 167 FLDMLSQSGLRMGLFAYSALL-IHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINAL 225

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C  GN   A+ I  +V   E    +  D FTY++++           AL+V   M   G 
Sbjct: 226 CKDGNVADAETIMKKVFESE----MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGC 281

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PNT+T+S+LIN   ++G V +A  L  EM+  G  P +  C   + A  +   ++ A+R
Sbjct: 282 EPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWR 341

Query: 455 LF--------RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI----TNTPNFVPNSHY 502
           LF             + T +  G    G       + H+  +      T T N + N   
Sbjct: 342 LFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILV 401

Query: 503 SSFDKRFSF-----------KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549
            +   +++F            P   TYN ++K  C   D  +   +MN M   G S N +
Sbjct: 402 ENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLV 461

Query: 550 SWTILIDACGGSGNVEGALQ 569
           ++  +I     SGN   AL+
Sbjct: 462 TYNTIIKGYCDSGNTTSALR 481



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 132/313 (42%), Gaps = 28/313 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEV 311
           PN+ I   +I+     G+   +  I + +    ++ + + + S++  +   HDL   L+V
Sbjct: 213 PNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQV 272

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M K G   +  +Y+ L+   C +G      E +  ++ +   G+L     T +  + 
Sbjct: 273 FNQMAKEGCEPNTVTYSTLINGLCDSGRV---NEAFDLIREMILHGILP-TAHTCTGPII 328

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
              D   ++ A ++  DM + G  PN  T+++LI+    +GL++ A+ LF  M + G  P
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFP 388

Query: 432 NSQCCNILLQACVEACQFDRAF---RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           N+   N L+   VE  +   AF    L      S   V   E   G       +    K+
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC-----ILGDPKK 443

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
           ++    N +   H ++            TYN ++K  C       AL  ++ MR  G  P
Sbjct: 444 AMLVMNNMLQRGHSANL----------VTYNTIIKGYCDSGNTTSALRILDLMRDGGCKP 493

Query: 547 NHISWTILIDACG 559
           +  S+T LI  CG
Sbjct: 494 DEWSYTELI--CG 504



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 122/289 (42%), Gaps = 32/289 (11%)

Query: 290 NIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           NI  +N ++       D K  + V  NM + G  A++ +YN ++K  C +GNT  A  I 
Sbjct: 424 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL 483

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
                L   G  K D ++Y+ ++  F      + A  +  +M+  G+ PN +T+++LI+ 
Sbjct: 484 ----DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDG 539

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
                 ++ A  L E M ++GC PN Q  N+L+    +   F  A  L         +V 
Sbjct: 540 YCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL--------CKVM 591

Query: 468 LGEDYDGN----TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK--PTTTTYNIL 521
           + E    N    T  I  +      S+              F+K       P   TY+ L
Sbjct: 592 IEEGIFPNVVTYTAMIDGLCKNGSTSLA----------LEMFNKMIEQGCLPNLLTYSSL 641

Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           ++A   +      + L  E+   GL P+ I++  +I+A   SG VE A 
Sbjct: 642 IRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAF 690



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 133/332 (40%), Gaps = 20/332 (6%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A R +   K     PN+Y    +I    + G    +  ++  +    V  N   +N+L+N
Sbjct: 339 AWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALIN 398

Query: 300 VNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
           +   +  +K+   V   M + G   ++ +YN ++K  C+ G+   A  +   + ++  +G
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV---MNNMLQRG 455

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
               ++ TY+TI+K + D+     AL++ + M   G  P+  +++ LI        +E A
Sbjct: 456 H-SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESA 514

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
             LF EM+  G  PN      L+    +  + D A  L      S  +         N  
Sbjct: 515 FGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRP--------NVQ 566

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL-- 535
             + + H     +T   NF                P   TY  ++   C +     AL  
Sbjct: 567 TYNVLIH----GLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            N+M   G  PN ++++ LI A G  G VE A
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEA 654



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 141/324 (43%), Gaps = 28/324 (8%)

Query: 254 PNMYICR-TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           P  + C   II +C + G Y  +  ++ D++++    N+Y + +L++    +  LK  + 
Sbjct: 318 PTAHTCTGPIIALCDM-GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIG 376

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M + GV  +  +YN L+    L  N  +       V +L  +     ++ TY+ ++
Sbjct: 377 LFHRMSRDGVFPNTVTYNALINI--LVENRRIKYAFV--VLNLMGRNGCSPNIVTYNEMI 432

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           K +      + A+ V  +ML  G + N +T++++I    ++G    A+ + + M   GC+
Sbjct: 433 KGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 492

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDK 487
           P+      L+    +  + + AF LF       L   +V      DG          KD+
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYC--------KDE 544

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLS 545
           +  T T       H     KR   +P   TYN+L+       ++   + L   M   G+ 
Sbjct: 545 KLDTATSLL---EHM----KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
           PN +++T +ID    +G+   AL+
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALE 621



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 124/286 (43%), Gaps = 11/286 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSR-AIY 279
           + +   ++ +    +  SALR  D  +     P+ +    +I  CG C    M+S   ++
Sbjct: 461 VTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI--CGFCKISKMESAFGLF 518

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLA 337
            ++    +  N   + +L++    D K      + ++M++ G   ++ +YN+L+      
Sbjct: 519 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            N   A+E+    K +  +G+   +V TY+ ++          +AL++   M+  G  PN
Sbjct: 579 NNFSGAEEL---CKVMIEEGIFP-NVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +T+SSLI A    G VE+A +LF E+ + G  P+      +++A + + + + AF    
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
               +  Q  L   Y      + N      Q +   P+ VPN  + 
Sbjct: 695 RMIKAGCQPTLWT-YGVLIKGLKNEYLLADQRLAALPDVVPNCSFG 739



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 139/350 (39%), Gaps = 42/350 (12%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--------DYMKSRAIYEDLRS 284
           +K DL SAL+ ++   K    PN     T+I+  G+C         D ++   ++  L +
Sbjct: 262 RKHDLDSALQVFNQMAKEGCEPNTVTYSTLIN--GLCDSGRVNEAFDLIREMILHGILPT 319

Query: 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
            +      +  +L ++  ++  + L  + +M+  G   ++ +Y  L+   C++G   L +
Sbjct: 320 AHTCTGPII--ALCDMGCYEDAWRL--FVDMKNKGCEPNVYTYTALISGLCVSG---LLK 372

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
              G    +   GV   +  TY+ ++ +  + +  + A  V   M   G +PN +T++ +
Sbjct: 373 VAIGLFHRMSRDGVFP-NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR---LFRSWTL 461
           I      G  ++AM +   MLQ G   N    N +++   ++     A R   L R    
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 491

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYN 519
              + +  E   G   +IS ME                S +  F++       P   TY 
Sbjct: 492 KPDEWSYTELICGFC-KISKME----------------SAFGLFNEMVDDGLCPNEVTYT 534

Query: 520 ILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            L+   C D       +L+  M+  G  PN  ++ +LI       N  GA
Sbjct: 535 ALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGA 584


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 148/323 (45%), Gaps = 30/323 (9%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV---NAHDLKFTLE 310
           PN+     +I + G  G + +   +++D++  N + +I  +N+L+ V   N  D + +  
Sbjct: 402 PNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVS-G 460

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++K M++ G +A+  ++N L+ A    G+   A  +Y  +  LEA GV+  D+ TY+ ++
Sbjct: 461 IFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSM--LEA-GVVP-DLSTYNAVL 516

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
              A    W+ + KV  +M      PN +++SSL++A AN   +E+     EE+     E
Sbjct: 517 AALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVE 576

Query: 431 PNSQCCNILLQACVEA---CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
            ++     L+    ++    + +RAF   R   +S     L                   
Sbjct: 577 THAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNA----------------M 620

Query: 488 QSITNTPNFVPNSH-YSSFDKRFSFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGL 544
            SI      V  +H   +F     F P+ TTYN L  M +   ++ + + ++ E+   G+
Sbjct: 621 LSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGM 680

Query: 545 SPNHISWTILIDACGGSGNVEGA 567
            P+ IS+  +I A   +G ++ A
Sbjct: 681 KPDRISYNTVIYAYCRNGRMKEA 703



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 112/228 (49%), Gaps = 10/228 (4%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLN 290
           G+ RD   A+  ++  ++   +P +     +++V G  G  +    A+ E +RS+ V  +
Sbjct: 207 GRYRD---AVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPD 263

Query: 291 IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           +Y +N+L++        +  + +++ M+  G   D  +YN LL    + G +   QE   
Sbjct: 264 LYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLD---VFGKSRRPQEAMK 320

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            ++ +EA G     V TY++++  +A     + AL +K  M+  G+ P+  T+++L++  
Sbjct: 321 VLQEMEANGFSPTSV-TYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGF 379

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             AG  + A+ +F EM   GC+PN    N L++      +F    ++F
Sbjct: 380 EKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVF 427



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 105/208 (50%), Gaps = 19/208 (9%)

Query: 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYK 313
           Y C  +I+     G Y  +  ++  ++       +  +N ++NV             + +
Sbjct: 196 YTC--LINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSNVTALVE 253

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT-----YST 368
            M+  GV  D+ +YN L+ +CC  G+      +Y E  HL  +  +KL+ FT     Y+ 
Sbjct: 254 AMRSRGVAPDLYTYNTLI-SCCRRGS------LYEEAVHLFQQ--MKLEGFTPDKVTYNA 304

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++ VF  ++  Q A+KV ++M + G +P ++T++SLI+A A  GL+E+A+ L  +M+  G
Sbjct: 305 LLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKG 364

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
            +P+      LL    +A + D A ++F
Sbjct: 365 IKPDVFTYTTLLSGFEKAGKDDFAIQVF 392



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 101/206 (49%), Gaps = 12/206 (5%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           LV A+R+   +      P++Y   T+I  C     Y ++  +++ ++ +  T +   +N+
Sbjct: 251 LVEAMRSRGVA------PDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNA 304

Query: 297 LMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           L++V   +   +  ++V + M+  G      +YN L+ A    G    A ++  ++ H  
Sbjct: 305 LLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVH-- 362

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            KG+ K DVFTY+T++  F  A     A++V  +M + G  PN  T+++LI    N G  
Sbjct: 363 -KGI-KPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKF 420

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILL 440
            + M +F+++    C P+    N LL
Sbjct: 421 AEMMKVFDDIKLCNCSPDIVTWNTLL 446



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 6/196 (3%)

Query: 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
           Y+  V    +L    V    K   L+   RA+   ++   SP++     ++ + G     
Sbjct: 571 YSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMV 630

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNIL 330
            K+  I   +     T ++  +NSLM + +    F  + E+ + + + G+  D  SYN +
Sbjct: 631 AKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTV 690

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           + A C  G    A  I+ E+K       L  DV TY+T +  +A    +  A+ V   M+
Sbjct: 691 IYAYCRNGRMKEASRIFSEMK----DSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMI 746

Query: 391 SAGVTPNTITWSSLIN 406
             G  P+  T++S+++
Sbjct: 747 KQGCKPDQNTYNSIVD 762


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 150/346 (43%), Gaps = 38/346 (10%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IY 279
           I +   +  F  +RD+ SA +     + + S PN +    +I   G C      +A  ++
Sbjct: 429 ISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIH--GFCKRQRLDKALEVF 486

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLA 337
             +    V LNI+  N + +    +  F   L++   +Q LG++ +  +YNI++K  C  
Sbjct: 487 TIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKE 546

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFT----YSTIVKVFADAKWWQMALKVKEDMLSAG 393
             T  A E+           +LK +VF     Y+T++  +A       AL +   ML  G
Sbjct: 547 QKTEKAWEV--------LPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVG 598

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + P+ +T++ LIN  +N   +++A +LF+EM++ G  P+      ++    +      A+
Sbjct: 599 IPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAW 658

Query: 454 RLFR---SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
            L+     W  S   V      DG   +I  M+  D         F+ N       KR +
Sbjct: 659 ALYEEMSQWGKSPNVVTYTCLIDGYF-KIKRMDKAD---------FLFNKM-----KRDN 703

Query: 511 FKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTIL 554
             P   TY  L+    +  Y  RV+ + NEM+  G+ PN+ ++  L
Sbjct: 704 VTPDGLTYTALIFGYQSLGYSDRVREMFNEMKENGVFPNYTAYATL 749



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 152/368 (41%), Gaps = 61/368 (16%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVT 288
           FGK  D+V A    +  + +  SP +      I   G+C  G    +  +  DLR +N  
Sbjct: 263 FGKNIDIVKATEVLEEMEMNGESPTVVTYGAYIH--GLCRAGCVEFALRLIRDLRIRNQP 320

Query: 289 LNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           LN Y +N++++      +L    E+ ++M+  G+     SY+IL+   C  G    A ++
Sbjct: 321 LNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDL 380

Query: 347 YGEV--------------------------------KHLEAKGVLKLDVFTYSTIVKVFA 374
             E+                                 +L A+G  K DV +Y+T++  F 
Sbjct: 381 IEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGY-KHDVISYNTLINGFV 439

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
             +    A K+  +M   G  PN+ T++ LI+       +++A+ +F  ML+ G + N  
Sbjct: 440 LQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIF 499

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN----MEHKDKQSI 490
            CNI+      A +F+R    + +  L      LG   +  T  I       E K +++ 
Sbjct: 500 TCNIM------ADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAW 553

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNH 548
              P  + N+ +          P    YN L+          KAL+   +M  VG+ P+ 
Sbjct: 554 EVLPVMLKNNVF----------PCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSI 603

Query: 549 ISWTILID 556
           +++T+LI+
Sbjct: 604 VTYTMLIN 611



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/360 (18%), Positives = 145/360 (40%), Gaps = 36/360 (10%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           ++ F +   LV A   +  +++     N+  C  +++           R+++E+L+    
Sbjct: 185 IKVFAENNMLVDAADVFVQARRFGLELNILSCNFLLNCFAEANQTEFIRSLFEELKDSGP 244

Query: 288 TLNIYVFNSLMNVNAH-------DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           + N++ +  +MN           D+    EV + M+  G    + +Y   +   C AG  
Sbjct: 245 SPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAYIHGLCRAGCV 304

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A  +   ++ L  +    L+ + Y+ ++  F        A ++ EDM S G++P   +
Sbjct: 305 EFALRL---IRDLRIRNQ-PLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYS 360

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW- 459
           +S LI+     G VE+A+ L EEM+Q+  +P+    + L     ++   + +  +F +  
Sbjct: 361 YSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLG 420

Query: 460 -------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
                   +S   +  G     +      + H+ + + +   +F  N     F KR    
Sbjct: 421 AEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLD 480

Query: 513 PTTTTYNILMKA-------CCT----------DYYRVKALMNEMRTVGLSPNHISWTILI 555
                + I++K         C            ++    L+NE++ +G+ PN  ++ I+I
Sbjct: 481 KALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVI 540


>gi|167998422|ref|XP_001751917.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162697015|gb|EDQ83352.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1216

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 8/206 (3%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVY 312
           N+     +ID C   GD  K+  IY+ + +Q V  +  +FN+L+        F    EV 
Sbjct: 658 NVQTFGAMIDGCARAGDVPKAFGIYKKMLNQEVEPDRVIFNTLITACGRAGAFLRAFEVL 717

Query: 313 KNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            +M+     +  D  +Y  L+ AC  AG    A E+Y  ++  +  G  +     Y+  V
Sbjct: 718 ADMRDAPQPIALDHITYGALIAACSRAGEVERALEVYKRMRSSKVSGTTE----CYTAAV 773

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
              +   +  +AL + +DM   GV P+ + + ++++   +AG ++ A  + +EM   G +
Sbjct: 774 HACSHKGYLNIALSIYDDMREDGVQPDEVFFCAMMDVAGHAGKIDVAFAILQEMKNIGTK 833

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
           P+    N L+ AC +    + A R++
Sbjct: 834 PSPVTYNTLMVACSKVDDAENAMRVY 859



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 11/197 (5%)

Query: 242 RAYDASKKHLSS---PNMYICRTIIDVCGICGDYMKSRAIYEDLRS--QNVTLNIYVFNS 296
           +A+   KK L+    P+  I  T+I  CG  G ++++  +  D+R   Q + L+   + +
Sbjct: 677 KAFGIYKKMLNQEVEPDRVIFNTLITACGRAGAFLRAFEVLADMRDAPQPIALDHITYGA 736

Query: 297 LMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           L+     A +++  LEVYK M+   V      Y   + AC   G   +A  IY +++   
Sbjct: 737 LIAACSRAGEVERALEVYKRMRSSKVSGTTECYTAAVHACSHKGYLNIALSIYDDMRE-- 794

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
             GV   +VF +  ++ V   A    +A  + ++M + G  P+ +T+++L+ AC+     
Sbjct: 795 -DGVQPDEVF-FCAMMDVAGHAGKIDVAFAILQEMKNIGTKPSPVTYNTLMVACSKVDDA 852

Query: 415 EQAMHLFEEMLQAGCEP 431
           E AM ++EE+   G  P
Sbjct: 853 ENAMRVYEEIKALGLRP 869



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 125/294 (42%), Gaps = 17/294 (5%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           A+ E +  +++ LN+   NS    +A   +  L+      +L     + ++N+LL  C  
Sbjct: 543 AVLESM-DEHLILNMKKVNSYEFYSACKKRRALKEAFKFSRLVRRKSLRNFNMLLSVCAH 601

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           A +   A  +   VK       L+ D   Y+T++   A A    +  K   +M   G+  
Sbjct: 602 AQDASSACRVLDMVKM----AGLQADCIFYTTLISACAKASRIDLMFKFFNEMEIQGIEA 657

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N  T+ ++I+ CA AG V +A  ++++ML    EP+    N L+ AC  A  F RAF + 
Sbjct: 658 NVQTFGAMIDGCARAGDVPKAFGIYKKMLNQEVEPDRVIFNTLITACGRAGAFLRAFEVL 717

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
                +   +AL     G      +   + ++++      V     SS         TT 
Sbjct: 718 ADMRDAPQPIALDHITYGALIAACSRAGEVERALE-----VYKRMRSS-----KVSGTTE 767

Query: 517 TYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            Y   + AC    Y   AL   ++MR  G+ P+ + +  ++D  G +G ++ A 
Sbjct: 768 CYTAAVHACSHKGYLNIALSIYDDMREDGVQPDEVFFCAMMDVAGHAGKIDVAF 821



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           +IY+D+R   V  +   F ++M+V  H  K      + + M+ +G      +YN L+ AC
Sbjct: 787 SIYDDMREDGVQPDEVFFCAMMDVAGHAGKIDVAFAILQEMKNIGTKPSPVTYNTLMVAC 846

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKL 361
               +   A  +Y E+K L  + +L L
Sbjct: 847 SKVDDAENAMRVYEEIKALGLRPILFL 873


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/379 (20%), Positives = 147/379 (38%), Gaps = 100/379 (26%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327
           GD   +RA +E++R++ +  N +VF SL++  A   D++  L   + M+  G+   + +Y
Sbjct: 278 GDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTY 337

Query: 328 NILL-----------------------------------KACCLAGNTVLAQEIYGEVKH 352
           +IL+                                    A C +GN   A+E+   V+ 
Sbjct: 338 SILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEEL---VRE 394

Query: 353 LEAKGV----------------------------------LKLDVFTYSTIVKVFADAKW 378
           +E  G+                                   K  + +Y  ++ ++     
Sbjct: 395 MEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGK 454

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              AL + ++M S G+  N  T+S LIN   +      A  +FEEML++G +P+    N+
Sbjct: 455 VAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNL 514

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVA------LGEDYDGNTDRISNMEHKDKQSITN 492
           L++A  +    DRA  +       + Q +      + E Y    D  S ++  D      
Sbjct: 515 LIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLD------ 568

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY--YRVKALMNEMRTVGLSPNHIS 550
                         +R    PT  TYN L+      +   R  +++++M   G++PN  +
Sbjct: 569 ------------LMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHT 616

Query: 551 WTILIDACGGSGNVEGALQ 569
           +TI++     SG++  A +
Sbjct: 617 YTIIMRGYAASGDIGKAFE 635



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 137/339 (40%), Gaps = 53/339 (15%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   K+ +I +++ S  +  N   ++ L+N  ++ HD      +++ M + G+  D A Y
Sbjct: 453 GKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIY 512

Query: 328 NILLKACCLAGN-------------------------TVLAQEIYGEVKH-LEAKGVLKL 361
           N+L++A C  GN                          +    + G++K  L+   +++ 
Sbjct: 513 NLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRR 572

Query: 362 D-----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
                 V TY+ ++         Q A+ V + M  AG+TPN  T++ ++   A +G + +
Sbjct: 573 SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGK 632

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK---TQVALGEDYD 473
           A   F ++ ++G + +      LL+AC ++ +   A  + R  +  K            D
Sbjct: 633 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILID 692

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYR 531
           G   R    E +D           PN H               TY   + ACC   D  R
Sbjct: 693 GWARRGDVWEAEDLMKQMKEDGVPPNIH---------------TYTSYINACCKAGDMQR 737

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
            + ++ EM  VGL PN  ++T LI         + AL+C
Sbjct: 738 AEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKC 776



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 114/273 (41%), Gaps = 41/273 (15%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  F K  ++  A+   +  +K    P+    R II+   + GD   +    + +R   
Sbjct: 515 LIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSG 574

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
               +  +N+L++  V  H ++  + V   M   G+  +  +Y I+++    +G+   A 
Sbjct: 575 CVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAF 634

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV------------------- 385
           E + ++K    +  LKLDV+ Y T+++    +   Q AL V                   
Sbjct: 635 EYFTKIK----ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 690

Query: 386 ------------KEDMLSA----GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
                        ED++      GV PN  T++S INAC  AG +++A  + EEM+  G 
Sbjct: 691 IDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGL 750

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           +PN +    L++        DRA + F    L+
Sbjct: 751 KPNVKTYTTLIKGWARVSLPDRALKCFEEMKLA 783



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 93/190 (48%), Gaps = 6/190 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +PN +    I+      GD  K+   +  ++   + L++Y++ +L+     +  ++  L 
Sbjct: 611 TPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALA 670

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M    +  +   YNIL+      G+   A+++   +K ++  GV   ++ TY++ +
Sbjct: 671 VTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDL---MKQMKEDGVPP-NIHTYTSYI 726

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A   Q A KV E+M+  G+ PN  T+++LI   A   L ++A+  FEEM  AG +
Sbjct: 727 NACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLK 786

Query: 431 PNSQCCNILL 440
           P+    + L+
Sbjct: 787 PDEASYHCLV 796



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 91/182 (50%), Gaps = 6/182 (3%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           +R +    D+  A   +   K+     ++YI  T++  C   G    + A+  ++  Q +
Sbjct: 621 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKI 680

Query: 288 TLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             N +++N L++  A   D+    ++ K M++ GV  ++ +Y   + ACC AG+   A++
Sbjct: 681 PRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEK 740

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +  E+  +     LK +V TY+T++K +A       ALK  E+M  AG+ P+  ++  L+
Sbjct: 741 VIEEMVDVG----LKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV 796

Query: 406 NA 407
            +
Sbjct: 797 TS 798


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 108/257 (42%), Gaps = 53/257 (20%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M + G   +  +YN L+ +   A     A  ++ +++    +   K D  TY T++ + A
Sbjct: 390 MVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQ----EAGCKPDRVTYCTLIDIHA 445

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            A +  +A+ + + M + G++P+T T+S +IN    AG +  A  LF EM+  GC PN  
Sbjct: 446 KAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLV 505

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             NI++    +A  +  A +L+R                            D Q+     
Sbjct: 506 TYNIMMDLHAKARNYQNALKLYR----------------------------DMQNA---- 533

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWT 552
                           F+P   TY+I+M+    C      +A+  EM+     P+   + 
Sbjct: 534 ---------------GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYG 578

Query: 553 ILIDACGGSGNVEGALQ 569
           +L+D  G +GNVE A Q
Sbjct: 579 LLVDLWGKAGNVEKAWQ 595



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 108/235 (45%), Gaps = 7/235 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  +    K   L  A+  Y   +    SP+ +    II+  G  G    +  ++ +
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCE 494

Query: 282 LRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q  T N+  +N +M+++A   + +  L++Y++MQ  G   D  +Y+I+++     G 
Sbjct: 495 MVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY 554

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ ++ E   ++ K  +  D   Y  +V ++  A   + A +  + ML AG+ PN  
Sbjct: 555 LEEAEAVFTE---MQQKNWIP-DEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVP 610

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-CQFDRAF 453
           T +SL++       + +A  L + ML  G  P+ Q   +LL  C +   + D  F
Sbjct: 611 TCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMGF 665



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 113/250 (45%), Gaps = 12/250 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  +G+   L  A+  ++  ++    P+     T+ID+    G    +  +Y+ 
Sbjct: 400 VTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQR 459

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +++  ++ + + ++ ++N    A  L    +++  M   G   ++ +YNI++     A N
Sbjct: 460 MQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN 519

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++Y ++++       + D  TYS +++V     + + A  V  +M      P+  
Sbjct: 520 YQNALKLYRDMQN----AGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEP 575

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +  L++    AG VE+A   ++ ML AG  PN   CN LL        F R  ++  ++
Sbjct: 576 VYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLST------FLRVNKIAEAY 629

Query: 460 TLSKTQVALG 469
            L +  +ALG
Sbjct: 630 ELLQNMLALG 639



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 113/237 (47%), Gaps = 6/237 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   V   G+ +   +  +  D   +    PN      +I   G      ++  ++  ++
Sbjct: 367 YTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQ 426

Query: 284 SQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
                 +   + +L++++A    L   +++Y+ MQ  G+  D  +Y++++     AG+  
Sbjct: 427 EAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLP 486

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A +++ E   +  +G    ++ TY+ ++ + A A+ +Q ALK+  DM +AG  P+ +T+
Sbjct: 487 AAHKLFCE---MVDQGCTP-NLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY 542

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           S ++    + G +E+A  +F EM Q    P+     +L+    +A   ++A++ +++
Sbjct: 543 SIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQA 599


>gi|357124808|ref|XP_003564089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Brachypodium distachyon]
          Length = 502

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 116/237 (48%), Gaps = 12/237 (5%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS---QNVTLNIY 292
           DL++ LR  D   K+L +PN  +   +I      GD   +  + +++R     +V  N+ 
Sbjct: 170 DLIADLR--DPRNKYLPTPNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLV 227

Query: 293 VFNSLMN--VNAHDLKFTLEVYKNM-QKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
            +++L+     A  +K   E+++ M +K  ++ D  +YN+++   C  G    A+ I+G 
Sbjct: 228 TYSTLIGGLCRAGKMKEAFELFEEMIEKDHIVPDQLTYNVIINGFCRLGQVDKARTIFGF 287

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           ++  E +     + F Y+T++   +     +    V E+M SAGV P+ +++++LI    
Sbjct: 288 MRKNECEP----NAFNYATLMNGHSRKGELENLRMVFEEMKSAGVEPDAVSYTALIGCLC 343

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
             G V++ + L  EM + GC+ +    N+L++   +  +   A  L RS  L   Q+
Sbjct: 344 RHGSVDEGIDLVREMREKGCKADVVTYNLLIEGLCKDKRMVEAMDLLRSLPLEGVQL 400


>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 521

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 112/238 (47%), Gaps = 39/238 (16%)

Query: 223 LFCNFVREFGKKRDLVSALRA-YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +F   V+   K  DL SAL   ++  K   S PN+    T+ID  G+CG+          
Sbjct: 201 IFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLID--GLCGN---------- 248

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM-QKLGVMADMASYNILLKACCLAGNT 340
                                  LK  +E+++ M  K  ++ D  +Y++L+K  C  G  
Sbjct: 249 ---------------------GRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKA 287

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A++I   ++ + + G    +VF YS ++  F      + A +V ++M S+G+ P+T+ 
Sbjct: 288 DRARKI---MEFMRSNGC-DPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVG 343

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +++LIN     G +++AM L +EM +  C+ ++   N+LL+      +FD A R+  +
Sbjct: 344 YTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLEN 401



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 6/177 (3%)

Query: 287 VTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLA 343
           V  N  +FN L+  +  + DL+  LEV   M+K      ++ +Y+ L+   C  G    A
Sbjct: 195 VRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEA 254

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            E++ E   + +K  +  D  TYS ++K F        A K+ E M S G  PN   +S 
Sbjct: 255 IELFEE---MVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSV 311

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           L+N     G +E+A  +F+EM  +G +P++     L+       + D A  L +  T
Sbjct: 312 LMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMT 368



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 85/185 (45%), Gaps = 10/185 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           PN++    +++  G C  G   +++ ++++++S  +  +   + +L+N       +   +
Sbjct: 304 PNVFNYSVLMN--GFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAM 361

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+ K M ++   AD  ++N+LLK  C  G      E    +++L  +GV  L+  +Y  +
Sbjct: 362 ELLKEMTEMKCKADAVTFNVLLKGLCREGRF---DEALRMLENLAYEGVY-LNKGSYRIV 417

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + +  +   MLS G  P+  T + L+     AG+V+ A+     + Q G 
Sbjct: 418 LNFLCQKGELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAGMVDNAVTALFGLTQMGF 477

Query: 430 EPNSQ 434
            P  +
Sbjct: 478 TPEPK 482


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 112/214 (52%), Gaps = 12/214 (5%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEV 311
           +PN+     +ID     G  +++  +Y+++  +++  +I+ ++SL+N    HD    L+ 
Sbjct: 306 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD---RLDE 362

Query: 312 YKNMQKLGVMAD----MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            K+M +L +  D    + +YN L+K  C A       E++ E+      G    +  TY+
Sbjct: 363 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG----NTVTYN 418

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           T+++    A    MA K+ + M+S GV P+ IT+S L++     G +E+A+ +FE + ++
Sbjct: 419 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 478

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
             EP+    NI+++   +A + +  + LF S +L
Sbjct: 479 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 512



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 122/260 (46%), Gaps = 45/260 (17%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYM-KSRAIY 279
           + F   +  F K+  LV A + YD   K    P+++   ++I+  G C  D + +++ ++
Sbjct: 310 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN--GFCMHDRLDEAKHMF 367

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E + S++   N+  +N+L+     A  ++  +E+++ M + G++ +  +YN L++    A
Sbjct: 368 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQA 427

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL---------KVKED 388
           G+  +AQ+I+   K + + GV   D+ TYS ++         + AL         K++ D
Sbjct: 428 GDCDMAQKIF---KKMVSDGVPP-DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 483

Query: 389 MLS--------------------------AGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           + +                           GV PN I ++++I+     GL E+A  LF 
Sbjct: 484 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFR 543

Query: 423 EMLQAGCEPNSQCCNILLQA 442
           EM + G  PNS   N L++A
Sbjct: 544 EMKEDGTLPNSGTYNTLIRA 563



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 142/320 (44%), Gaps = 34/320 (10%)

Query: 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302
           +YD  +K   S N+ +   + D   + G+ ++SR +           +I  FN L++  A
Sbjct: 28  SYDYREKL--SRNVLLDLKLDDAVDLFGEMVQSRPLP----------SIVEFNKLLSAIA 75

Query: 303 HDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
              KF L +   + MQ L +  D+ SYNIL+   C      LA  + G++  L  +    
Sbjct: 76  KMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEP--- 132

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            D+ T S+++  +   K    A+ + + M      PNT+T+++LI+         +A+ L
Sbjct: 133 -DIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVAL 191

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
            + M+  GC+P+      ++    +    D A  L +     K +  +   Y    D + 
Sbjct: 192 IDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADV-VIYTTIIDALC 250

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMN 537
           N      +++ +  N      ++  D +   +P   TYN L++  C +Y R      L++
Sbjct: 251 NY-----KNVNDALNL-----FTEMDNK-GIRPNVVTYNSLIRCLC-NYGRWSDASRLLS 298

Query: 538 EMRTVGLSPNHISWTILIDA 557
           +M    ++PN ++++ LIDA
Sbjct: 299 DMIERKINPNVVTFSALIDA 318



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 6/227 (2%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K+ D+  AL      +K     ++ I  TIID      +   +  ++ ++ ++ +  N+ 
Sbjct: 216 KRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 275

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +NSL+    N         +  +M +  +  ++ +++ L+ A    G  V A+++Y E+
Sbjct: 276 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 335

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
                K  +  D+FTYS+++  F        A  + E M+S    PN +T+++LI     
Sbjct: 336 ----IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCK 391

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           A  VE+ M LF EM Q G   N+   N L+Q   +A   D A ++F+
Sbjct: 392 AKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 438



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 134/311 (43%), Gaps = 26/311 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EV 311
           PN+    ++I      G +  +  +  D+  + +  N+  F++L++    + K     ++
Sbjct: 272 PNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 331

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK---LDVFTYST 368
           Y  M K  +  D+ +Y+ L+   C+        +   E KH+    + K    +V TY+T
Sbjct: 332 YDEMIKRSIDPDIFTYSSLINGFCM-------HDRLDEAKHMFELMISKDCFPNVVTYNT 384

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++K F  AK  +  +++  +M   G+  NT+T+++LI     AG  + A  +F++M+  G
Sbjct: 385 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 444

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
             P+    +ILL    +  + ++A  +F     SK +  +   Y  N   I  M    K 
Sbjct: 445 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDI---YTYNI-MIEGMCKAGK- 499

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR--VKALMNEMRTVGLSP 546
            + +  +      + S   +   KP    Y  ++   C    +    AL  EM+  G  P
Sbjct: 500 -VEDGWDL-----FCSLSLK-GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLP 552

Query: 547 NHISWTILIDA 557
           N  ++  LI A
Sbjct: 553 NSGTYNTLIRA 563



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++ I++ + S  V  +I  ++ L++       L+  L V++ +QK  +  D+ +Y
Sbjct: 428 GDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTY 487

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           NI+++  C AG      +++     L  KGV K +V  Y+T++  F      + A  +  
Sbjct: 488 NIMIEGMCKAGKVEDGWDLFCS---LSLKGV-KPNVIIYTTMISGFCRKGLKEEADALFR 543

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +M   G  PN+ T+++LI A    G    +  L +EM   G
Sbjct: 544 EMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCG 584


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 137/320 (42%), Gaps = 34/320 (10%)

Query: 279 YEDLRSQN-VTLNIYVFNSLMNVNAHDLKFTLEV---YKNMQKLGVMADMASYNILLKAC 334
           + D+ SQ+ + + ++ +++L+ ++   L  T  V   Y  M   GV  ++  YN ++ A 
Sbjct: 167 FLDMLSQSGLRMGLFAYSALL-IHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINAL 225

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C  GN   A+ I  +V   E    +  D FTY++++           AL+V   M   G 
Sbjct: 226 CKDGNVADAETIMKKVFESE----MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGC 281

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PNT+T+S+LIN   ++G V +A  L  EM+  G  P +  C   + A  +   ++ A+R
Sbjct: 282 EPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWR 341

Query: 455 LFRSW--------TLSKTQVALGEDYDGNTDRISNMEHKDKQSI----TNTPNFVPNSHY 502
           LF             + T +  G    G       + H+  +      T T N + N   
Sbjct: 342 LFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILV 401

Query: 503 SSFDKRFSF-----------KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549
            +   +++F            P   TYN ++K  C   D  +   +MN M   G S N +
Sbjct: 402 ENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLV 461

Query: 550 SWTILIDACGGSGNVEGALQ 569
           ++  +I     SGN   AL+
Sbjct: 462 TYNTIIKGYCDSGNTTSALR 481



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 132/313 (42%), Gaps = 28/313 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEV 311
           PN+ I   +I+     G+   +  I + +    ++ + + + S++  +   HDL   L+V
Sbjct: 213 PNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQV 272

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M K G   +  +Y+ L+   C +G      E +  ++ +   G+L     T +  + 
Sbjct: 273 FNQMAKEGCEPNTVTYSTLINGLCDSGRV---NEAFDLIREMILHGILP-TAHTCTGPII 328

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
              D   ++ A ++  DM + G  PN  T+++LI+    +GL++ A+ LF  M + G  P
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFP 388

Query: 432 NSQCCNILLQACVEACQFDRAF---RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           N+   N L+   VE  +   AF    L      S   V   E   G       +    K+
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC-----ILGDPKK 443

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
           ++    N +   H ++            TYN ++K  C       AL  ++ MR  G  P
Sbjct: 444 AMLVMNNMLQRGHSANL----------VTYNTIIKGYCDSGNTTSALRILDLMRDGGCKP 493

Query: 547 NHISWTILIDACG 559
           +  S+T LI  CG
Sbjct: 494 DEWSYTELI--CG 504



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 110/499 (22%), Positives = 189/499 (37%), Gaps = 67/499 (13%)

Query: 74  YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV 133
           Y  + + L KDG + +   I++ V  SE +   F          S I+   R+  +D  +
Sbjct: 218 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFT-------YTSMILGHCRKHDLDSAL 270

Query: 134 GVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEV-EMFVGLMEVLEEFRLPVKELD 192
            V  ++ + G  P    +   +  L N    L DSG V E F  + E++    LP     
Sbjct: 271 QVFNQMAKEGCEP----NTVTYSTLING---LCDSGRVNEAFDLIREMILHGILPTA--- 320

Query: 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS 252
                               + C  P   I  C    + G   D   A R +   K    
Sbjct: 321 --------------------HTCTGP--IIALC----DMGCYED---AWRLFVDMKNKGC 351

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
            PN+Y    +I    + G    +  ++  +    V  N   +N+L+N+   +  +K+   
Sbjct: 352 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V   M + G   ++ +YN ++K  C+ G+   A  +   + ++  +G    ++ TY+TI+
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV---MNNMLQRGH-SANLVTYNTII 467

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           K + D+     AL++ + M   G  P+  +++ LI        +E A  LF EM+  G  
Sbjct: 468 KGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLC 527

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN      L+    +  + D A  L      S  +         N    + + H     +
Sbjct: 528 PNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRP--------NVQTYNVLIH----GL 575

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNH 548
           T   NF                P   TY  ++   C +     AL   N+M   G  PN 
Sbjct: 576 TKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNL 635

Query: 549 ISWTILIDACGGSGNVEGA 567
           ++++ LI A G  G VE A
Sbjct: 636 LTYSSLIRALGQEGKVEEA 654



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 122/289 (42%), Gaps = 32/289 (11%)

Query: 290 NIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           NI  +N ++       D K  + V  NM + G  A++ +YN ++K  C +GNT  A  I 
Sbjct: 424 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL 483

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
                L   G  K D ++Y+ ++  F      + A  +  +M+  G+ PN +T+++LI+ 
Sbjct: 484 ----DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDG 539

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
                 ++ A  L E M ++GC PN Q  N+L+    +   F  A  L         +V 
Sbjct: 540 YCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL--------CKVM 591

Query: 468 LGEDYDGN----TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK--PTTTTYNIL 521
           + E    N    T  I  +      S+              F+K       P   TY+ L
Sbjct: 592 IEEGIFPNVVTYTAMIDGLCKNGSTSLA----------LEMFNKMIEQGCLPNLLTYSSL 641

Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           ++A   +      + L  E+   GL P+ I++  +I+A   SG VE A 
Sbjct: 642 IRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAF 690



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 140/324 (43%), Gaps = 28/324 (8%)

Query: 254 PNMYICR-TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           P  + C   II +C + G Y  +  ++ D++++    N+Y + +L++    +  LK  + 
Sbjct: 318 PTAHTCTGPIIALCDM-GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIG 376

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M + GV  +  +YN L+    L  N  +       V +L  +     ++ TY+ ++
Sbjct: 377 LFHRMSRDGVFPNTVTYNALINI--LVENRRIKYAFV--VLNLMGRNGCSPNIVTYNEMI 432

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           K +      + A+ V  +ML  G + N +T++++I    ++G    A+ + + M   GC+
Sbjct: 433 KGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 492

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDK 487
           P+      L+    +  + + AF LF       L   +V      DG          KD+
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYC--------KDE 544

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLS 545
           +  T T             KR   +P   TYN+L+       ++   + L   M   G+ 
Sbjct: 545 KLDTATSLL-------EHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
           PN +++T +ID    +G+   AL+
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALE 621



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 124/286 (43%), Gaps = 11/286 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSR-AIY 279
           + +   ++ +    +  SALR  D  +     P+ +    +I  CG C    M+S   ++
Sbjct: 461 VTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI--CGFCKISKMESAFGLF 518

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLA 337
            ++    +  N   + +L++    D K      + ++M++ G   ++ +YN+L+      
Sbjct: 519 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            N   A+E+    K +  +G+   +V TY+ ++          +AL++   M+  G  PN
Sbjct: 579 NNFSGAEEL---CKVMIEEGIFP-NVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +T+SSLI A    G VE+A +LF E+ + G  P+      +++A + + + + AF    
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
               +  Q  L   Y      + N      Q +   P+ VPN  + 
Sbjct: 695 RMIKAGCQPTLWT-YGVLIKGLKNEYLLADQRLAALPDVVPNCSFG 739


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 107/236 (45%), Gaps = 7/236 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
           + + +  F        A+  +   ++    P +     I++V G  G  + K  ++ E +
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM 270

Query: 283 RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           +S  +  + Y +N+L+         +   +V++ M+  G   D  +YN LL    + G +
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLD---VYGKS 327

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
              +E    +  +E  G     + TY++++  +A       A+++K  M   G  P+  T
Sbjct: 328 HRPKEAMKVLNEMELNG-FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFT 386

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +++L++    AG VE AM++FEEM  AGC+PN    N  ++      +F    ++F
Sbjct: 387 YTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIF 442



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 150/340 (44%), Gaps = 26/340 (7%)

Query: 231 FGKKRDLVSALRAYD---ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           F KK DL  AL A+D     K + S  +  +   +I + G  G    +  ++  L+    
Sbjct: 147 FHKKFDL--ALCAFDWFMKQKDYQSMLDNSVIAIVISMLGKEGRVSSAANLFNGLQEDGF 204

Query: 288 TLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
           +L++Y + SL++  A+  ++   + V+K M++ G    + +YN++L      G      +
Sbjct: 205 SLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTP--WNK 262

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           I   V+ +++ G+   D +TY+T++         Q A +V E+M +AG + + +T+++L+
Sbjct: 263 ITSLVEKMKSDGIAP-DAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALL 321

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           +    +   ++AM +  EM   G  P+    N L+ A       D A  L        T+
Sbjct: 322 DVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTK 381

Query: 466 VALGEDYDGNTDRISNMEHKDK-QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
                D    T  +S  E   K +S  N    + N+           KP   T+N  +K 
Sbjct: 382 ----PDVFTYTTLLSGFERAGKVESAMNIFEEMRNA---------GCKPNICTFNAFIKM 428

Query: 525 CCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
                 +  +  + +E+   GLSP+ ++W  L+   G +G
Sbjct: 429 YGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNG 468



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 150/346 (43%), Gaps = 36/346 (10%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  F +   + SA+  ++  +     PN+      I + G  G ++    I++++ 
Sbjct: 387 YTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEIN 446

Query: 284 SQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
              ++ +I  +N+L+ V   N  D + +  V+K M++ G + +  ++N L+ A    G+ 
Sbjct: 447 VCGLSPDIVTWNTLLAVFGQNGMDSEVS-GVFKEMKRAGFVPERETFNTLISAYSRCGSF 505

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A  +Y   + +   GV   D+ TY+T++   A    W+ + KV  +M      PN +T
Sbjct: 506 EQAMTVY---RRMLDAGVTP-DLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELT 561

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC-------QFDRAF 453
           + SL++A AN   +     L EE+     EP +    +LL+  V  C       + +RAF
Sbjct: 562 YCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRA----VLLKTLVLVCSKCDLLPEAERAF 617

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
              +    S     L           S +    ++ +    N V +     + K   F P
Sbjct: 618 SELKERGFSPDITTLN----------SMVSIYGRRQMVGKANEVLD-----YMKERGFTP 662

Query: 514 TTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           +  TYN L  M +   D+ + + ++ E+   G+ P+ IS+  +I A
Sbjct: 663 SMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYA 708



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 108/223 (48%), Gaps = 6/223 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + + + +  + +   L  A+   +   +  + P+++   T++      G    +  I+E+
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEE 409

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R+     NI  FN+ + +  +  KF   ++++  +   G+  D+ ++N LL    + G 
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLL---AVFGQ 466

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             +  E+ G  K ++  G +  +  T++T++  ++    ++ A+ V   ML AGVTP+  
Sbjct: 467 NGMDSEVSGVFKEMKRAGFVP-ERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLS 525

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           T+++++ A A  G+ EQ+  +  EM    C+PN      LL A
Sbjct: 526 TYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHA 568



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 104/205 (50%), Gaps = 7/205 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P   + +T++ VC  C    ++   + +L+ +  + +I   NS++++      +    EV
Sbjct: 592 PRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEV 651

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M++ G    MA+YN L+     + +   ++EI   ++ + AKG+ K D+ +Y+T++ 
Sbjct: 652 LDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEI---LREILAKGI-KPDIISYNTVIY 707

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +      + A ++  +M  +G+ P+ IT+++ I + A   + E+A+ +   M++ GC P
Sbjct: 708 AYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRP 767

Query: 432 NSQCCNILLQACVEACQFDRAFRLF 456
           N    N ++    +  + D A +LF
Sbjct: 768 NQNTYNSIVDGYCKLNRKDEA-KLF 791



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 41/242 (16%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +P+ Y   T+I  C     + ++  ++E++++   + +   +N+L++V   +H  K  ++
Sbjct: 276 APDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMK 335

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V   M+  G    + +YN L+ A    G  +L + +  E+K+  A+   K DVFTY+T++
Sbjct: 336 VLNEMELNGFSPSIVTYNSLISAYARDG--MLDEAM--ELKNQMAEKGTKPDVFTYTTLL 391

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNT-------------------------------- 398
             F  A   + A+ + E+M +AG  PN                                 
Sbjct: 392 SGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLS 451

Query: 399 ---ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
              +TW++L+      G+  +   +F+EM +AG  P  +  N L+ A      F++A  +
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511

Query: 456 FR 457
           +R
Sbjct: 512 YR 513



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 21/216 (9%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV-EQA 417
             LDV++Y++++  FA++  ++ A+ V + M   G  P  IT++ ++N     G    + 
Sbjct: 204 FSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKI 263

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG 474
             L E+M   G  P++   N L+  C        A ++F   ++   S  +V     Y+ 
Sbjct: 264 TSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVT----YNA 319

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA 534
             D +    H+ K+++        N           F P+  TYN L+ A   D    +A
Sbjct: 320 LLD-VYGKSHRPKEAMKVLNEMELN----------GFSPSIVTYNSLISAYARDGMLDEA 368

Query: 535 --LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             L N+M   G  P+  ++T L+     +G VE A+
Sbjct: 369 MELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 100/213 (46%), Gaps = 7/213 (3%)

Query: 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
             I PRA +L    V    K   L  A RA+   K+   SP++    +++ + G      
Sbjct: 588 GVIEPRA-VLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVG 646

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILL 331
           K+  + + ++ +  T ++  +NSLM +++    F  + E+ + +   G+  D+ SYN ++
Sbjct: 647 KANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVI 706

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            A C       A  I+ E++     G++  DV TY+T +  +A    ++ A+ V   M+ 
Sbjct: 707 YAYCRNTRMRDASRIFSEMRD---SGIVP-DVITYNTFIGSYAADSMFEEAIGVVRYMIK 762

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            G  PN  T++S+++        ++A    E++
Sbjct: 763 HGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDL 795



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/384 (17%), Positives = 139/384 (36%), Gaps = 90/384 (23%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F  F++ +G +   V  ++ +D       SP++    T++ V G  G   +   ++++++
Sbjct: 422 FNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
                     FN+L++  +    F   + VY+ M   GV  D+++YN +L A    G   
Sbjct: 482 RAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWE 541

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA--------- 392
            ++++  E++     G  K +  TY +++  +A+ K   +   + E++ S          
Sbjct: 542 QSEKVLAEME----DGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLL 597

Query: 393 --------------------------GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
                                     G +P+  T +S+++      +V +A  + + M +
Sbjct: 598 KTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKE 657

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G  P+    N L+     +  F ++  + R   L+K                       
Sbjct: 658 RGFTPSMATYNSLMYMHSRSADFGKSEEILRE-ILAK----------------------- 693

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGL 544
                                    KP   +YN ++ A C  T       + +EMR  G+
Sbjct: 694 -----------------------GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGI 730

Query: 545 SPNHISWTILIDACGGSGNVEGAL 568
            P+ I++   I +       E A+
Sbjct: 731 VPDVITYNTFIGSYAADSMFEEAI 754


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 108/257 (42%), Gaps = 53/257 (20%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M + G   +  +YN L+ +   A     A  ++ +++    +   K D  TY T++ + A
Sbjct: 390 MVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQ----EAGCKPDRVTYCTLIDIHA 445

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            A +  +A+ + + M + G++P+T T+S +IN    AG +  A  LF EM+  GC PN  
Sbjct: 446 KAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLV 505

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             NI++    +A  +  A +L+R                            D Q+     
Sbjct: 506 TYNIMMDLHAKARNYQNALKLYR----------------------------DMQNA---- 533

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWT 552
                           F+P   TY+I+M+    C      +A+  EM+     P+   + 
Sbjct: 534 ---------------GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYG 578

Query: 553 ILIDACGGSGNVEGALQ 569
           +L+D  G +GNVE A Q
Sbjct: 579 LLVDLWGKAGNVEKAWQ 595



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 108/235 (45%), Gaps = 7/235 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  +    K   L  A+  Y   +    SP+ +    II+  G  G    +  ++ +
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCE 494

Query: 282 LRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q  T N+  +N +M+++A   + +  L++Y++MQ  G   D  +Y+I+++     G 
Sbjct: 495 MVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY 554

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ ++ E   ++ K  +  D   Y  +V ++  A   + A +  + ML AG+ PN  
Sbjct: 555 LEEAEAVFTE---MQQKNWIP-DEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVP 610

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-CQFDRAF 453
           T +SL++       + +A  L + ML  G  P+ Q   +LL  C +   + D  F
Sbjct: 611 TCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMGF 665



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 113/250 (45%), Gaps = 12/250 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  +G+   L  A+  ++  ++    P+     T+ID+    G    +  +Y+ 
Sbjct: 400 VTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQR 459

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +++  ++ + + ++ ++N    A  L    +++  M   G   ++ +YNI++     A N
Sbjct: 460 MQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN 519

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++Y ++++       + D  TYS +++V     + + A  V  +M      P+  
Sbjct: 520 YQNALKLYRDMQN----AGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEP 575

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +  L++    AG VE+A   ++ ML AG  PN   CN LL        F R  ++  ++
Sbjct: 576 VYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLST------FLRVNKIAEAY 629

Query: 460 TLSKTQVALG 469
            L +  +ALG
Sbjct: 630 ELLQNMLALG 639



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 113/237 (47%), Gaps = 6/237 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   V   G+ +   +  +  D   +    PN      +I   G      ++  ++  ++
Sbjct: 367 YTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQ 426

Query: 284 SQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
                 +   + +L++++A    L   +++Y+ MQ  G+  D  +Y++++     AG+  
Sbjct: 427 EAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLP 486

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A +++ E   +  +G    ++ TY+ ++ + A A+ +Q ALK+  DM +AG  P+ +T+
Sbjct: 487 AAHKLFCE---MVDQGCTP-NLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY 542

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           S ++    + G +E+A  +F EM Q    P+     +L+    +A   ++A++ +++
Sbjct: 543 SIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQA 599


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 143/323 (44%), Gaps = 36/323 (11%)

Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE-DLRSQNVTLNIY-----VFNSLMN 299
           A K+   + N + C  ++ V      Y+K+R + +  L  Q+   N++      +N+LMN
Sbjct: 92  AGKQSKFTHNRFTCNNLLSV------YVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMN 145

Query: 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
               A D+K  L ++  M+  G+ A + S+NI+L+  C  G   +A E++ ++      G
Sbjct: 146 GFFKAGDVKKALALFGEMKDSGI-AVLRSHNIVLRGLCSGGKISMAWEVFKDM-----SG 199

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
           +   ++ +Y+ ++     ++    A+ + + M+   + P+ +T+ +LI+       V++A
Sbjct: 200 IFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEA 259

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
             LFEE    GC P     N ++    +  + + A  L+        +  L  D    + 
Sbjct: 260 YDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMV---REPHLKPDMFTYSA 316

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN 537
            I+ +      +++N        +    D   S  P   TYN L+   C      KA M 
Sbjct: 317 LINGL------NLSNRGEKAYELYEEMLDTGCS--PDVVTYNTLLDGLCKSGCEDKA-ME 367

Query: 538 EMRTVGLS----PNHISWTILID 556
             R +G+     PN I++T+LID
Sbjct: 368 IFRKMGVGNVCDPNVITYTVLID 390



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 115/237 (48%), Gaps = 7/237 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +   GK+R +  A   ++ ++     P +    T+ID    CG    +  +Y+D
Sbjct: 241 VTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDD 300

Query: 282 L-RSQNVTLNIYVFNSLMN-VN-AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           + R  ++  +++ +++L+N +N ++  +   E+Y+ M   G   D+ +YN LL   C +G
Sbjct: 301 MVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSG 360

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A EI+   + +    V   +V TY+ ++  F        A+K+ ++M    + P+ 
Sbjct: 361 CEDKAMEIF---RKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDA 417

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           +T++++I        +++A  LFE + +  C+P+S   N +L    +  + D A +L
Sbjct: 418 VTFTTVIQKLCKESRIDEAHELFESIGKT-CKPDSVLFNTMLAGYCKITRIDDAKKL 473



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/325 (20%), Positives = 140/325 (43%), Gaps = 29/325 (8%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNV--NAHDLKFT 308
           SPN+     +ID  G+C      +AI  ++ +  + +  ++  + +L++       +K  
Sbjct: 202 SPNLISYTIMID--GLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEA 259

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            ++++  +  G    + +YN ++   C  G    A  +Y +   +  +  LK D+FTYS 
Sbjct: 260 YDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDD---MVREPHLKPDMFTYSA 316

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++     +   + A ++ E+ML  G +P+ +T+++L++    +G  ++AM +F +M    
Sbjct: 317 LINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGN 376

Query: 429 -CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
            C+PN     +L+      C+ DR              V L ++ +G +     +     
Sbjct: 377 VCDPNVITYTVLID---RFCKVDRL----------GDAVKLAKEMEGRSLLPDAVTFTTV 423

Query: 488 QSITNTPNFVPNSH--YSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVG 543
                  + +  +H  + S  K  + KP +  +N ++   C  T     K L + M   G
Sbjct: 424 IQKLCKESRIDEAHELFESIGK--TCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSG 481

Query: 544 LSPNHISWTILIDACGGSGNVEGAL 568
            +P   ++T L+     +G    AL
Sbjct: 482 CAPTLATYTALVTGFCRTGRYSDAL 506


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 132/287 (45%), Gaps = 26/287 (9%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  +NS++N    + D    L++ + M +  V AD+ +Y+ ++ + C  G    A  ++
Sbjct: 169 NVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLF 228

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
              K +E KG+ K  + TY+++V     A  W   +++ +DM S  + PN IT++ LI+ 
Sbjct: 229 ---KEMETKGI-KSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDV 284

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVE--ACQFDRAFRLFRSWTLSKT 464
               G +++A  L++EM+  G  PN+   N L+   C++    + +    L      S  
Sbjct: 285 FVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPD 344

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
            V       G   ++  ++   K              +    KR      T TY+IL++ 
Sbjct: 345 IVTFTSLIKGYC-KVKRVDEGMKL-------------FRKISKR-GLVANTVTYSILVQG 389

Query: 525 CCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            C        + L  EM ++G+ P+ +++ IL+D    +G +E AL+
Sbjct: 390 FCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALE 436



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 128/299 (42%), Gaps = 22/299 (7%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGV 320
           V G+C  G +     + +D+ S+ +  N+  FN L++V   +  L+   E+YK M   G+
Sbjct: 247 VGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGI 306

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             +  +YN L+   C+      A  +      L  +     D+ T+++++K +   K   
Sbjct: 307 SPNTITYNSLMDGYCMQNRLSEANNML----DLMVRNNCSPDIVTFTSLIKGYCKVKRVD 362

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
             +K+   +   G+  NT+T+S L+     +G +E A  LF+EM+  G  P+     ILL
Sbjct: 363 EGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILL 422

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
               +  + ++A  +F     SK  +    D    T  I  M    K  + +  N     
Sbjct: 423 DGLCDNGKLEKALEIFEDLQKSKMNL----DIVMYTIIIEGMCKGGK--VEDAWNL---- 472

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
            + S   +   KP   TY +++   C      +A  L+ +M   G  PN  ++  LI A
Sbjct: 473 -FCSLPCK-GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRA 529



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 144/348 (41%), Gaps = 62/348 (17%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           I+P   I F   +  F K+  L  A   Y        SPN     +++D  G C     S
Sbjct: 271 IIPNV-ITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMD--GYCMQNRLS 327

Query: 276 RA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
            A  + + +   N + +I  F SL+        +   +++++ + K G++A+  +Y+IL+
Sbjct: 328 EANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILV 387

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           +  C +G   +A+E++ E+  L   GVL  DV TY  ++    D    + AL++ ED+  
Sbjct: 388 QGFCQSGKLEIAEELFQEMVSL---GVLP-DVMTYGILLDGLCDNGKLEKALEIFEDLQK 443

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           + +  + + ++ +I      G VE A +LF  +   G +PN     +++           
Sbjct: 444 SKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISG--------- 494

Query: 452 AFRLFRSWTLSKTQVALGE-DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
              L +  +LS+  + L + + DGN                                   
Sbjct: 495 ---LCKKGSLSEANILLRKMEEDGN----------------------------------- 516

Query: 511 FKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILID 556
            +P   TYN L++A     D      L+ EM++ G S +  S  ++ID
Sbjct: 517 -EPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 563



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 102/265 (38%), Gaps = 42/265 (15%)

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             L+  K M+  G+  ++ + NI++   C    T  A  + G+V  L  +     D  T+
Sbjct: 83  LVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEP----DTTTF 138

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++           A+ +   M+  G  PN +T++S++N    +G    A+ L  +M +
Sbjct: 139 NTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDE 198

Query: 427 AGCEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
              + +    + ++ + C + C  D A  LF+                        ME K
Sbjct: 199 RNVKADVFTYSTIIDSLCRDGC-IDAAISLFKE-----------------------METK 234

Query: 486 DKQSITNTPNFVP---------NSHYSSFDKRFSFK--PTTTTYNILMKACCTD--YYRV 532
             +S   T N +          N          S K  P   T+N+L+     +      
Sbjct: 235 GIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEA 294

Query: 533 KALMNEMRTVGLSPNHISWTILIDA 557
             L  EM T G+SPN I++  L+D 
Sbjct: 295 NELYKEMITKGISPNTITYNSLMDG 319


>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
          Length = 680

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 152/342 (44%), Gaps = 22/342 (6%)

Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
           K D V  LR Y   ++     ++ +   II      GD  K+  +    ++  ++     
Sbjct: 218 KIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTAT 277

Query: 294 FNSLMNVNAHDLKFTLE---VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
             S+++  A D   TLE   +++ +++ G+     +YN LLK     G    A+ +   V
Sbjct: 278 LVSIISALA-DSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESM---V 333

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
             +E +GV   D  TYS ++  + +A  W+ A  V ++M +  V PN+  +S L+    +
Sbjct: 334 SEMEKRGV-SPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRD 392

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G  ++   + +EM   G +P+ Q  N+++    +    D A   F           L E
Sbjct: 393 RGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDR--------MLSE 444

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD-- 528
             +   DR++     D     +  + V    + + ++R    P  TTYNI++ +      
Sbjct: 445 GIE--PDRVTWNTLIDCHC-KHGRHIVAEEMFEAMERRGCL-PCATTYNIMINSYGDQER 500

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
           +  +K L+ +M++ G+ PN ++ T L+D  G SG    A++C
Sbjct: 501 WDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIEC 542



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 157/389 (40%), Gaps = 62/389 (15%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +R + I PR    +   ++ + K   L  A       +K   SP+ +    +ID     G
Sbjct: 301 LRQSGIKPRTRA-YNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAG 359

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
            +  +R + +++ + +V  N +VF+ L+    +  + + T +V K M+ +GV  D   YN
Sbjct: 360 RWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYN 419

Query: 329 I-----------------------------------LLKACCLAGNTVLAQEIYGEVKHL 353
           +                                   L+   C  G  ++A+E++   + +
Sbjct: 420 VVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF---EAM 476

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
           E +G L     TY+ ++  + D + W    ++   M S G+ PN +T ++L++    +G 
Sbjct: 477 ERRGCLPCAT-TYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGR 535

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDRAFRLFRSWTLSKTQVALGE 470
              A+   EEM   G +P+S   N L+ A  +   + Q   AFR+  S  L  + +AL  
Sbjct: 536 FNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNS 595

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTD 528
             +   +     + +D ++               + K    KP   TY  LMKA      
Sbjct: 596 LINAFGE-----DRRDAEAFAVL----------QYMKENGVKPDVVTYTTLMKALIRVDK 640

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDA 557
           + +V  +  EM   G  P+  + ++L  A
Sbjct: 641 FQKVPVVYEEMIMSGCKPDRKARSMLRSA 669



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 144/320 (45%), Gaps = 48/320 (15%)

Query: 274 KSRAIYED-LRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNIL 330
           +S  +YE  L SQ  TL    +N+L+   A  +D++  L +   M++ G  +D  +Y+++
Sbjct: 150 RSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLV 209

Query: 331 LKACCLAG--NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           +++   +   ++V+   +Y E++    +  L+LDV   + I+  FA +     AL++   
Sbjct: 210 IQSLTRSNKIDSVMLLRLYKEIE----RDKLELDVQLVNDIIMGFAKSGDPSKALQLLGM 265

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
             + G++  T T  S+I+A A++G   +A  LFEE+ Q+G +P ++  N LL+  V+   
Sbjct: 266 AQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGP 325

Query: 449 FDRAFRLF-----RSWTLSKTQVALGEDYDGNTDR-------ISNMEHKDKQSITNTPN- 495
              A  +      R  +  +   +L  D   N  R       +  ME  D Q     PN 
Sbjct: 326 LKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQ-----PNS 380

Query: 496 FVPNSHYSSFDKR---------------FSFKPTTTTYNILM----KACCTDYYRVKALM 536
           FV +   + F  R                  KP    YN+++    K  C D+       
Sbjct: 381 FVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH--AMTTF 438

Query: 537 NEMRTVGLSPNHISWTILID 556
           + M + G+ P+ ++W  LID
Sbjct: 439 DRMLSEGIEPDRVTWNTLID 458


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 145/328 (44%), Gaps = 25/328 (7%)

Query: 248 KKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAH 303
           KK+    ++Y   T+I   G+CG  +   +  +Y+++    V+ ++ V+N+++N  + A 
Sbjct: 282 KKNERGQDLYTYSTLIH--GLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAG 339

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
            ++  LE++K M+K G    + SYNIL++   L  N  + + I   +  L  +     D 
Sbjct: 340 RIEECLELWKVMEKEGCRT-VVSYNILIRG--LFENAKVDEAI--SIWELLPEKDCCADS 394

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY  +V       +   AL + E+  +     +T  +SS+IN     G +++   + ++
Sbjct: 395 MTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQ 454

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M + GC+PN   CN ++   V A + + A R F +  +SK        Y+   + +S  E
Sbjct: 455 MTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGN-MVSKGCFPTVVTYNTLINGLSKAE 513

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV- 542
                  +     V    +        +KP   TY++LM   C       AL    + + 
Sbjct: 514 R-----FSEAYALVKEMLHK------GWKPNMITYSLLMNGLCQGKKLDMALNLWCQALE 562

Query: 543 -GLSPNHISWTILIDACGGSGNVEGALQ 569
            G  P+     I+I     SG VE ALQ
Sbjct: 563 KGFKPDVKMHNIIIHGLCSSGKVEDALQ 590



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 109/509 (21%), Positives = 198/509 (38%), Gaps = 98/509 (19%)

Query: 74  YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV 133
           Y  M + L K G+ +E   I   +  +E    +   + +   +  G+  S   G +D   
Sbjct: 258 YNVMINGLCKCGKFDESFEIWHRMKKNE----RGQDLYTYSTLIHGLCGS---GNLDGAT 310

Query: 134 GVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE--------FR 185
            V K++ E GV+P    D   +  + N     L +G +E  + L +V+E+        + 
Sbjct: 311 RVYKEMAENGVSP----DVVVYNTMLNG---YLRAGRIEECLELWKVMEKEGCRTVVSYN 363

Query: 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD-----ILFCNFVREFGKKRDLVSA 240
           + ++ L E  +          V+ AI    ++P  D     + +   V    K   L  A
Sbjct: 364 ILIRGLFENAK----------VDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKA 413

Query: 241 LRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           L   + ++      + +   ++I+  G+C  G   +   + + +       N +V N+++
Sbjct: 414 LSILEEAENGRGDLDTFAYSSMIN--GLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVI 471

Query: 299 N--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           N  V A  L+  L  + NM   G    + +YN L+     A       E Y  VK +  K
Sbjct: 472 NGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERF---SEAYALVKEMLHK 528

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  K ++ TYS ++      K   MAL +    L  G  P+    + +I+   ++G VE 
Sbjct: 529 G-WKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVED 587

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476
           A+ L+ EM Q  C PN    N L++   +   F+RA +++                    
Sbjct: 588 ALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIW-------------------- 627

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK--- 533
           D I                            ++  +P   +YNI +K  C+  +R+    
Sbjct: 628 DHIL---------------------------QYGPQPDIISYNITLKGLCS-CHRISDAV 659

Query: 534 ALMNEMRTVGLSPNHISWTILIDACGGSG 562
             +N+    G+ P  I+W IL+ A   +G
Sbjct: 660 GFLNDAVDRGVLPTAITWNILVRAVLDNG 688



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 112/225 (49%), Gaps = 15/225 (6%)

Query: 242 RAYDASKKHLS-------SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
           + +D +K+ L+       SP+++   T+I+     G    +  +++++  + VT ++  +
Sbjct: 163 KQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACY 222

Query: 295 NSLMN--VNAHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           N L++      D+    E+++ + K   V  ++ SYN+++   C  G    + EI+  +K
Sbjct: 223 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 282

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
             E       D++TYST++     +     A +V ++M   GV+P+ + +++++N    A
Sbjct: 283 KNERGQ----DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRA 338

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           G +E+ + L++ M + GC       NIL++   E  + D A  ++
Sbjct: 339 GRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIW 382



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 308 TLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
            L++++ M ++ G    + SYN LL A   +     A+  +    + E  G L  ++ TY
Sbjct: 97  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFF---LYFETMG-LSPNLQTY 152

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + ++K+    K +  A ++   M   G +P+  ++ +LIN+ A  G +  A+ LF+EM +
Sbjct: 153 NILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPE 212

Query: 427 AGCEPNSQCCNILLQA 442
            G  P+  C NIL+  
Sbjct: 213 RGVTPDVACYNILIDG 228



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 97/207 (46%), Gaps = 5/207 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
           SPN+     +I +      + K++ +   +  Q  + +++ + +L+N  A +  +   L+
Sbjct: 146 SPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALK 205

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M + GV  D+A YNIL+      G+ + A EI+  +  L+   V   ++ +Y+ ++
Sbjct: 206 LFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL--LKGPSVYP-NIPSYNVMI 262

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                   +  + ++   M       +  T+S+LI+    +G ++ A  +++EM + G  
Sbjct: 263 NGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVS 322

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFR 457
           P+    N +L   + A + +    L++
Sbjct: 323 PDVVVYNTMLNGYLRAGRIEECLELWK 349



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 72/203 (35%), Gaps = 50/203 (24%)

Query: 368 TIVKVFADAKWWQMALKVKEDMLSA-GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           T++K +A       AL + + M    G  P   +++SL+NA   +   ++A   F     
Sbjct: 83  TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFET 142

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G  PN Q  NIL++      QFD+A  L  +W   +                       
Sbjct: 143 MGLSPNLQTYNILIKISCRKKQFDKAKELL-NWMWEQ----------------------- 178

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGL 544
                                   F P   +Y  L+ +   + Y   A  L +EM   G+
Sbjct: 179 -----------------------GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGV 215

Query: 545 SPNHISWTILIDACGGSGNVEGA 567
           +P+   + ILID     G++  A
Sbjct: 216 TPDVACYNILIDGFFKKGDILNA 238


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 132/308 (42%), Gaps = 24/308 (7%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL--KFTLEVYKNMQKLGVMADMASY 327
           G+   +  ++E +R+      +  FN L+   A +   +   +V+  M+      D+ SY
Sbjct: 15  GEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDR-YAPDLRSY 73

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             L+ A C A N V A  ++ E+     +  LK DV  ++T+++     +    A+K+ E
Sbjct: 74  TALMLAWCNARNLVEAGRVWNEM----LENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFE 129

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            M + G  PN  T++ LI      G ++ AM  FEEM   GC+P+      LL     A 
Sbjct: 130 LMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAK 189

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
           + DR   L    T  K     G  Y+     ++N          N P+     +     K
Sbjct: 190 RMDRVTALLEEMT-QKGCPPDGRTYNALIKLLTN---------RNMPDDAARIYKKMIKK 239

Query: 508 RFSFKPTTTTYNILMKA---CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
               +PT  TYN++MK+      +Y    A+  EM   G+ P+  S+T+ I+     G  
Sbjct: 240 --GLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRP 297

Query: 565 EGALQCRF 572
           E A  C++
Sbjct: 298 EEA--CKY 303



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 98/234 (41%), Gaps = 46/234 (19%)

Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIY 292
           R+LV A R ++   ++   P++ +  T+I+  G+     +  A+  +E ++++    N++
Sbjct: 84  RNLVEAGRVWNEMLENGLKPDVVVHNTMIE--GLLRGQRRPEAVKMFELMKAKGPAPNVW 141

Query: 293 VFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILL------------------- 331
            +  L+  +     +   +  ++ MQ +G   D+A+Y  LL                   
Sbjct: 142 TYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEM 201

Query: 332 --KACCLAGNTV--------------LAQEIYGEVKHLEAKGVLKLDVFTYSTIVK-VFA 374
             K C   G T                A  IY   K +  KG L+  + TY+ ++K  F 
Sbjct: 202 TQKGCPPDGRTYNALIKLLTNRNMPDDAARIY---KKMIKKG-LEPTIHTYNMMMKSYFL 257

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
             + + M   V E+M   G+ P+  +++  IN     G  E+A    EEM+Q G
Sbjct: 258 GGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKG 311


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 117/254 (46%), Gaps = 18/254 (7%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           +IL C     + K+  +  A+  +   ++H  +PN+     +I +    G    +   +E
Sbjct: 375 NILIC----AYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFE 430

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKF------TLEVYKNMQKLGVMADMASYNILLKAC 334
            +  + +T NI V+ SL+    H L          E+   M   G+  +   +N ++ + 
Sbjct: 431 QMIDEGLTPNIIVYTSLI----HSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSH 486

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C  G  + +++++     L  +  +K +V TYST++  +  A     A K+   M S G+
Sbjct: 487 CKEGRVIESEKLF----DLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGM 542

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+ +T+++LIN       ++ A+ LF+EM+ +G  PN    NI+LQ      +   A  
Sbjct: 543 KPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKE 602

Query: 455 LFRSWTLSKTQVAL 468
           L+   T S TQ+ L
Sbjct: 603 LYVGITKSGTQLEL 616



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 132/310 (42%), Gaps = 48/310 (15%)

Query: 267 GICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMA 322
           G C       AI   + +RS  V  ++  +NSLM+    + + T   +++ +M K G+  
Sbjct: 275 GYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEP 334

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+A+Y  LL+     G  V   E++  +  +   G+   D   ++ ++  +A  +    A
Sbjct: 335 DIATYCTLLQGYATKGALV---EMHALLDLMVRNGI-HPDHHVFNILICAYAKQEKVDEA 390

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           + V   M   G+ PN +T+ ++I     +G V+ AM  FE+M+  G  PN      L+ +
Sbjct: 391 MLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHS 450

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF--VPNS 500
               C FD+       W  ++  +               +E  D+    NT  F  + +S
Sbjct: 451 L---CIFDK-------WDKAEELI---------------LEMLDRGICLNTIFFNSIIHS 485

Query: 501 HYSS---------FD--KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
           H            FD   R   KP   TY+ L+   C      +A  L++ M +VG+ P+
Sbjct: 486 HCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPD 545

Query: 548 HISWTILIDA 557
            +++  LI+ 
Sbjct: 546 CVTYNTLING 555



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 108/216 (50%), Gaps = 6/216 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           +PN+ +  ++I    I   + K+  +  ++  + + LN   FNS+++ +  + +   + +
Sbjct: 438 TPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEK 497

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M ++GV  ++ +Y+ L+   CLAG    A ++   +  +     +K D  TY+T++
Sbjct: 498 LFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVG----MKPDCVTYNTLI 553

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +        AL + ++M+S+GV+PN IT++ ++    +      A  L+  + ++G +
Sbjct: 554 NGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQ 613

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
                 NI+L    +    D A R+F++  L+  Q+
Sbjct: 614 LELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 649



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 153/350 (43%), Gaps = 41/350 (11%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           S+P++    T+I+     GD  K+ + Y ++  + ++ ++  ++S++        +   +
Sbjct: 192 SAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAM 251

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           EV   M K GVM +  +YN +L   C   ++   +E  G +K + + GV + DV TY+++
Sbjct: 252 EVLTTMVKNGVMPNCMTYNSILHGYC---SSEQPKEAIGFLKKMRSDGV-EPDVVTYNSL 307

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+ + M   G+ P+  T+ +L+   A  G + +   L + M++ G 
Sbjct: 308 MDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGI 367

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGE------DYDGNTDRIS 480
            P+    NIL+ A  +  + D A  +F   R   L+   V  G             D + 
Sbjct: 368 HPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAML 427

Query: 481 NMEHKDKQSITNTPNFVPNSHYSS-------FDKRFSFKP------------TTTTYNIL 521
             E    + +  TPN +    Y+S       FDK    +              T  +N +
Sbjct: 428 YFEQMIDEGL--TPNIIV---YTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSI 482

Query: 522 MKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           + + C +   +++  L + M  +G+ PN I+++ LID    +G ++ A +
Sbjct: 483 IHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATK 532



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 108/252 (42%), Gaps = 18/252 (7%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D+ SY  ++      G++  A   Y E+  L+ +  +  DV TYS+I+      + 
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSDKAYSTYHEM--LDRR--ISPDVVTYSSIIAALCKGQA 246

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A++V   M+  GV PN +T++S+++   ++   ++A+   ++M   G EP+    N 
Sbjct: 247 MDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNS 306

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           L+    +  +   A ++F S     T+  L  D       +        Q        V 
Sbjct: 307 LMDYLCKNGRSTEARKIFDSM----TKRGLEPDIATYCTLL--------QGYATKGALVE 354

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILID 556
                    R    P    +NIL+ A        +A++  ++MR  GL+PN +++  +I 
Sbjct: 355 MHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIG 414

Query: 557 ACGGSGNVEGAL 568
               SG+V+ A+
Sbjct: 415 ILCKSGSVDDAM 426



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 129/338 (38%), Gaps = 71/338 (21%)

Query: 275 SRAIYEDLRSQNVTLNIYVFN-SLMNVNAHDLKFTLEVYKNMQKLG---VMADMASYNIL 330
           +R ++E+L  +    +IY  N +L +V  H     +  Y  M + G   V   + +Y IL
Sbjct: 34  ARHVFEELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYGIL 93

Query: 331 LKACCLAGNTVLAQEIYGEVK----HLEA-------KG-------------VLKL----- 361
           +  CC AG   L     G V      +EA       KG             VL+      
Sbjct: 94  IGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELS 153

Query: 362 ---DVFTYSTIVKVFADAKWWQMALKVKE---DMLSAGVTPNTITWSSLINACANAGLVE 415
              DVF+ + ++K   D    Q AL++     D    G  P+ ++++++IN     G  +
Sbjct: 154 CMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSD 213

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
           +A   + EML     P+    + ++ A  +    D+A  +    T+ K  V        N
Sbjct: 214 KAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL--TTMVKNGVM------PN 265

Query: 476 TDRISNMEH------KDKQSITNTPNFVPNSHYSSFDKRF---SFKPTTTTYNILMKACC 526
               +++ H      + K++I              F K+      +P   TYN LM   C
Sbjct: 266 CMTYNSILHGYCSSEQPKEAI-------------GFLKKMRSDGVEPDVVTYNSLMDYLC 312

Query: 527 TDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSG 562
            +    +A  + + M   GL P+  ++  L+      G
Sbjct: 313 KNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKG 350



 Score = 42.0 bits (97), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 50/268 (18%), Positives = 105/268 (39%), Gaps = 41/268 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I F + +    K+  ++ + + +D   +    PN+    T+ID   + G   ++  +   
Sbjct: 477 IFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSS 536

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S  +  +   +N+L+N       +   L ++K M   GV  ++ +YNI+L+       
Sbjct: 537 MFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRR 596

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A+E+Y  +     K   +L++ TY+ I+           AL++ +++    +   T 
Sbjct: 597 TAAAKELYVGI----TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR 652

Query: 400 TWSSLINACANAGLVEQAMHLFE-----------------------------------EM 424
           T++ +I A    G  ++A  LF                                     M
Sbjct: 653 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSM 712

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRA 452
            + GC  NS+  N +++  ++     RA
Sbjct: 713 EENGCTANSRMLNSIVRKLLQRGDITRA 740


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 108/257 (42%), Gaps = 53/257 (20%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M + G   +  +YN L+ +   A     A  ++ +++    +   K D  TY T++ + A
Sbjct: 507 MVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQ----EAGCKPDRVTYCTLIDIHA 562

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            A +  +A+ + + M + G++P+T T+S +IN    AG +  A  LF EM+  GC PN  
Sbjct: 563 KAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLV 622

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             NI++    +A  +  A +L+R                            D Q+     
Sbjct: 623 TYNIMMDLHAKARNYQNALKLYR----------------------------DMQNA---- 650

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWT 552
                           F+P   TY+I+M+    C      +A+  EM+     P+   + 
Sbjct: 651 ---------------GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYG 695

Query: 553 ILIDACGGSGNVEGALQ 569
           +L+D  G +GNVE A Q
Sbjct: 696 LLVDLWGKAGNVEKAWQ 712



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 108/235 (45%), Gaps = 7/235 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  +    K   L  A+  Y   +    SP+ +    II+  G  G    +  ++ +
Sbjct: 552 VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCE 611

Query: 282 LRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q  T N+  +N +M+++A   + +  L++Y++MQ  G   D  +Y+I+++     G 
Sbjct: 612 MVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY 671

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ ++ E   ++ K  +  D   Y  +V ++  A   + A +  + ML AG+ PN  
Sbjct: 672 LEEAEAVFTE---MQQKNWIP-DEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVP 727

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-CQFDRAF 453
           T +SL++       + +A  L + ML  G  P+ Q   +LL  C +   + D  F
Sbjct: 728 TCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMGF 782



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 113/250 (45%), Gaps = 12/250 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  +G+   L  A+  ++  ++    P+     T+ID+    G    +  +Y+ 
Sbjct: 517 VTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQR 576

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +++  ++ + + ++ ++N    A  L    +++  M   G   ++ +YNI++     A N
Sbjct: 577 MQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN 636

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++Y ++++       + D  TYS +++V     + + A  V  +M      P+  
Sbjct: 637 YQNALKLYRDMQN----AGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEP 692

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +  L++    AG VE+A   ++ ML AG  PN   CN LL        F R  ++  ++
Sbjct: 693 VYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLST------FLRVNKIAEAY 746

Query: 460 TLSKTQVALG 469
            L +  +ALG
Sbjct: 747 ELLQNMLALG 756



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 113/237 (47%), Gaps = 6/237 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   V   G+ +   +  +  D   +    PN      +I   G      ++  ++  ++
Sbjct: 484 YTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQ 543

Query: 284 SQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
                 +   + +L++++A    L   +++Y+ MQ  G+  D  +Y++++     AG+  
Sbjct: 544 EAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLP 603

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A +++ E   +  +G    ++ TY+ ++ + A A+ +Q ALK+  DM +AG  P+ +T+
Sbjct: 604 AAHKLFCE---MVDQGCTP-NLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY 659

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           S ++    + G +E+A  +F EM Q    P+     +L+    +A   ++A++ +++
Sbjct: 660 SIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQA 716


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 112/214 (52%), Gaps = 12/214 (5%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEV 311
           +PN+     +ID     G  +++  +Y+++  +++  +I+ ++SL+N    HD    L+ 
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD---RLDE 378

Query: 312 YKNMQKLGVMAD----MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            K+M +L +  D    + +YN L+K  C A       E++ E+      G    +  TY+
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG----NTVTYN 434

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           T+++    A    MA K+ + M+S GV P+ IT+S L++     G +E+A+ +FE + ++
Sbjct: 435 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
             EP+    NI+++   +A + +  + LF S +L
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 528



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 146/322 (45%), Gaps = 38/322 (11%)

Query: 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302
           +YD  +K   S N  +   + D  G+ G+ ++SR +           +I  FN L++  A
Sbjct: 44  SYDYREKL--SRNALLNLKLDDAIGLFGEMVQSRPLP----------SIVEFNKLLSAIA 91

Query: 303 HDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
              KF L +   + MQ L +  D+ SYNIL+   C      LA  + G++  L  +    
Sbjct: 92  KMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEP--- 148

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            D+ T S+++  +  +K    A+ + + M+  G  P+T+T+++LI+         +A+ L
Sbjct: 149 -DIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVAL 207

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
            ++M+Q GC+P+      ++    +    D A  L +     K +  +   Y+   D + 
Sbjct: 208 VDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADV-VIYNTIIDGLC 266

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCTDYYR---VKAL 535
             +H D               ++ F+K  +   +P   TYN L+ +C  +Y R      L
Sbjct: 267 KYKHID-------------DAFALFNKMETKGIRPDVFTYNSLI-SCLCNYGRWSDASRL 312

Query: 536 MNEMRTVGLSPNHISWTILIDA 557
           ++ M    ++PN ++++ LIDA
Sbjct: 313 LSNMIERKINPNVVTFSALIDA 334



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 110/229 (48%), Gaps = 10/229 (4%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLN 290
           K+ D+  AL      +K     ++ I  TIID  G+C       + A++  + ++ +  +
Sbjct: 232 KRGDIDLALSLLKKMEKGKIEADVVIYNTIID--GLCKYKHIDDAFALFNKMETKGIRPD 289

Query: 291 IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           ++ +NSL++   N         +  NM +  +  ++ +++ L+ A    G  V A+++Y 
Sbjct: 290 VFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 349

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E+     K  +  D+FTYS+++  F        A  + E M+S    PN +T+++LI   
Sbjct: 350 EM----IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGF 405

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             A  VE+ M LF EM Q G   N+   N L+Q   +A   D A ++F+
Sbjct: 406 CKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 123/260 (47%), Gaps = 45/260 (17%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYM-KSRAIY 279
           + F   +  F K+  LV A + YD   K    P+++   ++I+  G C  D + +++ ++
Sbjct: 326 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN--GFCMHDRLDEAKHMF 383

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E + S++   N+  +N+L+     A  ++  +E+++ M + G++ +  +YN L++    A
Sbjct: 384 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQA 443

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL---------KVKED 388
           G+  +AQ+I+   K + + GV   D+ TYS ++         + AL         K++ D
Sbjct: 444 GDCDMAQKIF---KKMVSDGVPP-DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 499

Query: 389 MLS--------------------------AGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           + +                           GV PN I ++++I+     GL E+A  LF 
Sbjct: 500 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFR 559

Query: 423 EMLQAGCEPNSQCCNILLQA 442
           EM + G  P+S C N L++A
Sbjct: 560 EMKEDGTLPDSGCYNTLIRA 579



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 103/217 (47%), Gaps = 12/217 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EV 311
           P+++   ++I      G +  +  +  ++  + +  N+  F++L++    + K     ++
Sbjct: 288 PDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 347

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK---LDVFTYST 368
           Y  M K  +  D+ +Y+ L+   C+        +   E KH+    + K    +V TY+T
Sbjct: 348 YDEMIKRSIDPDIFTYSSLINGFCM-------HDRLDEAKHMFELMISKDCFPNVVTYNT 400

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++K F  AK  +  +++  +M   G+  NT+T+++LI     AG  + A  +F++M+  G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
             P+    +ILL    +  + ++A  +F     SK +
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497


>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g21222; AltName: Full=SNF1-like protein kinase AtC401
 gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
          Length = 831

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 11/209 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN+  C TI++  G C  G   ++   +  ++   V  N++VFNSL+   +N +D+    
Sbjct: 529 PNVRTCGTIVN--GYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVG 586

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           EV   M++ GV  D+ +++ L+ A    G+    +EIY ++     +G +  D+  +S +
Sbjct: 587 EVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDM----LEGGIDPDIHAFSIL 642

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-AG 428
            K +A A   + A ++   M   GV PN + ++ +I+   +AG +++AM ++++M    G
Sbjct: 643 AKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVG 702

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
             PN      L+    EA Q  +A  L +
Sbjct: 703 LSPNLTTYETLIWGFGEAKQPWKAEELLK 731



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 17/168 (10%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           K  + TY+T+V      K +   L +   +   G+ P+TI ++++INA + +G ++QAM 
Sbjct: 351 KPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 410

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           +FE+M ++GC+P +   N L++   +  + + + RL          + L ++     DR 
Sbjct: 411 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL--------DMMLRDEMLQPNDRT 462

Query: 480 SNMEHK---DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
            N+  +   +++ I    N V         + +  KP   T+N L KA
Sbjct: 463 CNILVQAWCNQRKIEEAWNIVYKM------QSYGVKPDVVTFNTLAKA 504



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 146/371 (39%), Gaps = 56/371 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I +   V    +++   S L      +K+   P+  +   II+     G+  ++  I+E 
Sbjct: 355 ITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEK 414

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM-----ASYNILLKACCL 336
           ++          FN+L  +  +     LE    +  + +  +M      + NIL++A C 
Sbjct: 415 MKESGCKPTASTFNTL--IKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC- 471

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM-----LS 391
             N    +E +  V  +++ GV K DV T++T+ K +A       +    EDM     L 
Sbjct: 472 --NQRKIEEAWNIVYKMQSYGV-KPDVVTFNTLAKAYARIG----STCTAEDMIIPRMLH 524

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
             V PN  T  +++N     G +E+A+  F  M + G  PN    N L++  +       
Sbjct: 525 NKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNI----- 579

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR--- 508
                              D DG  + +  ME    +    T + + N+  S  D +   
Sbjct: 580 ------------------NDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCE 621

Query: 509 --------FSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
                       P    ++IL K  A   +  + + ++N+MR  G+ PN + +T +I   
Sbjct: 622 EIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGW 681

Query: 559 GGSGNVEGALQ 569
             +G ++ A+Q
Sbjct: 682 CSAGEMKKAMQ 692



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 83/193 (43%), Gaps = 5/193 (2%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +F + ++ F    D+       D  ++    P++    T+++     GD  +   IY D+
Sbjct: 568 VFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDM 627

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
               +  +I+ F+ L      A + +   ++   M+K GV  ++  Y  ++   C AG  
Sbjct: 628 LEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEM 687

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A ++Y ++  +     L  ++ TY T++  F +AK    A ++ +DM    V P   T
Sbjct: 688 KKAMQVYKKMCGIVG---LSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKT 744

Query: 401 WSSLINACANAGL 413
              + +   + G+
Sbjct: 745 MQLIADGWKSIGV 757


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 158/355 (44%), Gaps = 50/355 (14%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTL 289
            G  RDL+  ++    S+  L + N Y     I V G C   ++K  A   +L +QN  L
Sbjct: 259 LGDARDLLMDMK----SRGLLPNRNTYN----ILVYGYCKMGWLKEAANVIELMTQNNLL 310

Query: 290 -NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
            +++ +N L+N   N   ++   ++   M+ L ++ D+ SYN L+  C L  + +   E 
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGC-LEWSKI--SEA 367

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
           +  ++ +  KGV K +  T++ +VK +        A      M  +G +P+ +T+++LIN
Sbjct: 368 FKLLEEMSEKGV-KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLIN 426

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW------- 459
               AG + +A    +EM +   + +S   N +L+      + + A++L  S        
Sbjct: 427 GYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFI 486

Query: 460 -TLSKTQVALGEDYDGNTDRISNM--EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
             +S   + +G   DGN DR   +  E K+K+ I                      P+T 
Sbjct: 487 DEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEII----------------------PSTV 524

Query: 517 TYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           TYN ++   C      +A+  +NE+   GL P+  ++  ++      G+VE A Q
Sbjct: 525 TYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQ 579



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 89/412 (21%), Positives = 170/412 (41%), Gaps = 75/412 (18%)

Query: 229 REFGKKRDLVSALRAYDASKKH--------LSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           R+F   + L+    A D  ++H        L+SP+  +  T I      G    +  I++
Sbjct: 102 RKFSDAKSLLLGFIATD--RRHDLHLSILRLTSPSKALLDTAIGAYVQSGQPHHAFQIFK 159

Query: 281 DLRSQNVTLNIYVFNSLMNV-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            ++   +  N+   N+L+N      ++H + F+ E + +  KLG++ ++ ++NI++   C
Sbjct: 160 KMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYC 219

Query: 336 LAG------------------------NTVL----AQEIYGEVKHL----EAKGVLKLDV 363
           L                          NT+L     +   G+ + L    +++G+L  + 
Sbjct: 220 LENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLP-NR 278

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY+ +V  +    W + A  V E M    + P+  T++ LIN   N G +E+A  L +E
Sbjct: 279 NTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDE 338

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT-------------LSKTQVALGE 470
           M      P+    N L+  C+E  +   AF+L    +             + K     G+
Sbjct: 339 MENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGK 398

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSH---------YSSFDK--RFSFKPTTTTYN 519
             D  ++ I+ ME         T N + N +         + + D+  R + K  + T N
Sbjct: 399 -MDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLN 457

Query: 520 ILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +++  C +    +A  L++  R  G   + +S+  LI      GNV+ AL+
Sbjct: 458 TILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALK 509



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 133/321 (41%), Gaps = 59/321 (18%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312
           SP+     T+I+     G+  ++    +++  +N+ ++    N+++     + K   E Y
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLE-EAY 473

Query: 313 K---NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           K   + +K G   D  SY  L+      GN   A +++ E+K  E    +     TY+ I
Sbjct: 474 KLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKE----IIPSTVTYNCI 529

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + A+    ++L +G+ P+  T++++++     G VE+A     +M++   
Sbjct: 530 IGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSF 589

Query: 430 EPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           +P+   CNILL+  C+E    ++A +LF +W      V+ G+  D               
Sbjct: 590 KPDVFTCNILLRGLCMEGV-LEKALKLFNTW------VSKGKAID--------------- 627

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
                                     T TYN L+ + C +     A  L++EM    L P
Sbjct: 628 --------------------------TVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGP 661

Query: 547 NHISWTILIDACGGSGNVEGA 567
           +H ++  +I A   SG +  A
Sbjct: 662 DHYTYNAIITALTDSGRIREA 682


>gi|356574085|ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Glycine max]
          Length = 733

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 7/195 (3%)

Query: 278 IYEDLRSQ-NVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           +YE +R++  V   ++++N +M+  V    L   L VY ++++ G++ +  ++ +L+K  
Sbjct: 221 VYEKMRNKFGVKPRVFLYNRVMDALVRTGHLDLALSVYDDLKEDGLVEESVTFMVLVKGL 280

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C  G      E+ G ++    + + K DVF Y+ +VK+   A      L+V E+M    V
Sbjct: 281 CKCGRIDEMLEVLGRMR----ERLCKPDVFAYTALVKILVPAGNLDACLRVWEEMKRDRV 336

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+   ++++I   A  G V++   LF EM   GC  +      L++A V   + + AF 
Sbjct: 337 EPDVKAYATMIVGLAKGGRVQEGYELFREMKGKGCLVDRVIYGALVEAFVAEGKVELAFD 396

Query: 455 LFRSWTLSKTQVALG 469
           L +    S  +  LG
Sbjct: 397 LLKDLVSSGYRADLG 411



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 127/309 (41%), Gaps = 28/309 (9%)

Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMAS 326
           CG   +   +   +R +    +++ + +L+   V A +L   L V++ M++  V  D+ +
Sbjct: 283 CGRIDEMLEVLGRMRERLCKPDVFAYTALVKILVPAGNLDACLRVWEEMKRDRVEPDVKA 342

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           Y  ++      G     QE Y   + ++ KG L +D   Y  +V+ F      ++A  + 
Sbjct: 343 YATMIVGLAKGGRV---QEGYELFREMKGKGCL-VDRVIYGALVEAFVAEGKVELAFDLL 398

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           +D++S+G   +   +  LI    N   V++A  LF+  ++ G EP+      LL A  EA
Sbjct: 399 KDLVSSGYRADLGIYICLIEGLCNLNRVQKAYKLFQLTVREGLEPDFLTVKPLLVAYAEA 458

Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF---VPNSHYS 503
            + +   +L     L + Q  LG     +  +  ++  + K  I     F       H S
Sbjct: 459 NRMEEFCKL-----LEQMQ-KLGFPVIADLSKFFSVLVEKKGPIMALETFGQLKEKGHVS 512

Query: 504 SFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561
                         YNI M +     +  +  +L +EM+ + L P+  ++   I      
Sbjct: 513 -----------VEIYNIFMDSLHKIGEVKKALSLFDEMKGLSLKPDSFTYCTAILCLVDL 561

Query: 562 GNVEGALQC 570
           G ++ A  C
Sbjct: 562 GEIKEACAC 570


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 138/310 (44%), Gaps = 37/310 (11%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   ++   ++++    +  N  ++  L+N    A +L   L +++++  LGV+ D+ + 
Sbjct: 269 GKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTC 328

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           +  +      G    A +++ E+K    KG++  DVFTYS+++  F      + A ++ +
Sbjct: 329 SAFIHGLLKNGRVQEALKVFSELKE---KGLVP-DVFTYSSLISGFCKQGEVEKAFELHD 384

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M   G+ PN   +++L++    +G +++A  LF+ M + G EP+S   + ++    ++ 
Sbjct: 385 EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 444

Query: 448 QFDRAFRLFRSWTLSKTQ--------VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
               AF LF        Q        +  G   +G+ ++  N+  +  Q           
Sbjct: 445 NVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQ----------- 493

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
                  K F+   TT ++N L+   C          L  EM    + P+H+++T +ID 
Sbjct: 494 -------KGFA---TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDW 543

Query: 558 CGGSGNVEGA 567
              +G +E A
Sbjct: 544 HCKAGKMEEA 553



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/469 (20%), Positives = 181/469 (38%), Gaps = 79/469 (16%)

Query: 137 KKLNELGVAPLELFDGSGFKLLKNECQRLLDS----GEVEMFVGLMEVLEEFRLPVKELD 192
           K++NE  +   E    +G K   N C  L+D     G+++  + + +V+    +P+  + 
Sbjct: 24  KRMNEAKLT-FEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLIT 82

Query: 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADIL--------------FCNFVREFGKKRDLV 238
               I  LC          ++  +   A+IL              FC  +  + ++ ++ 
Sbjct: 83  YNVLIHGLC----------KFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMG 132

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
            AL   D  +K    P+      +I+    C D   +  + E +    +  N+ V+++L+
Sbjct: 133 RALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLI 192

Query: 299 NVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
              A +  ++    +   M   GV  D+  YN ++     AG     +E    +  ++ +
Sbjct: 193 MGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKM---EEASTYLLEIQGR 249

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G LK D  T+   +  ++       A K  ++ML  G+ PN   ++ LIN    AG + +
Sbjct: 250 G-LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME 308

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476
           A+ +F  +   G  P+ Q C+  +   ++  +   A ++F                    
Sbjct: 309 ALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFS------------------- 349

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSF------DKRFSFK---------PTTTTYNIL 521
                 E K+K  + +   F  +S  S F      +K F            P    YN L
Sbjct: 350 ------ELKEKGLVPDV--FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNAL 401

Query: 522 MKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           +   C   D  R + L + M   GL P+ ++++ +ID    S NV  A 
Sbjct: 402 VDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAF 450



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 156/356 (43%), Gaps = 68/356 (19%)

Query: 221 DILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRA 277
           D+  C+ F+    K   +  AL+ +   K+    P+++   ++I   G C  G+  K+  
Sbjct: 324 DVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS--GFCKQGEVEKAFE 381

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++++  + +  NI+++N+L++    + D++   +++  M + G+  D  +Y+ ++   C
Sbjct: 382 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC 441

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            + N   A  ++ E                                       M S GV 
Sbjct: 442 KSENVAEAFSLFHE---------------------------------------MPSKGVQ 462

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P++  +++L++ C   G +E+AM+LF EMLQ G    +   N L+    ++C+   A +L
Sbjct: 463 PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQL 521

Query: 456 FRSWT--------LSKTQVALGEDYDGNTDRI--SNMEHKDKQSITNTPNFVPNSHYSSF 505
           F+           ++ T V    D+     ++  +N+  K+ Q      N + ++ ++ F
Sbjct: 522 FQEMIAKQIMPDHVTYTTVI---DWHCKAGKMEEANLLFKEMQE----RNLIVDTVFALF 574

Query: 506 DKRFS--FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
           +K  +   KP   TY +++ A C +   V+A  L +E+   G+        +LI A
Sbjct: 575 EKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITA 630



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 108/258 (41%), Gaps = 24/258 (9%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M + G++ +  +Y I+    C A     A+  + E++    K  LK D    S ++  F 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQ----KTGLKPDYNACSALIDGFM 56

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                   L++K+ M+S G+  N IT++ LI+     G +E+A  + + M+  GC+PNS+
Sbjct: 57  REGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSR 116

Query: 435 CCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
              +L++         RA  L        L  + V+ G         I+ + H    S+ 
Sbjct: 117 TFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGA-------MINGLCHCKDLSLA 169

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHI 549
           N    +    +S        KP    Y+ L+    ++      + L++ M   G++P+  
Sbjct: 170 N--KLLEKMTFS------GLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIF 221

Query: 550 SWTILIDACGGSGNVEGA 567
            +  +I     +G +E A
Sbjct: 222 CYNAIISCLSKAGKMEEA 239



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/253 (18%), Positives = 104/253 (41%), Gaps = 18/253 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  + K  ++  A   +         P+ ++   ++  C   GD  K+  ++ +
Sbjct: 431 VTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFRE 490

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +     +  FN+L++      K     ++++ M    +M D  +Y  ++   C AG 
Sbjct: 491 MLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGK 549

Query: 340 TVLAQEIYGEVKH--------------LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
              A  ++ E++               + AKGV K D  TY  ++           A K+
Sbjct: 550 MEEANLLFKEMQERNLIVDTVFALFEKMVAKGV-KPDEVTYGLVIYAHCKEDNLVEAFKL 608

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
           +++++  G+         LI A      + +A  L +EM + G +P+   C+ L+++  E
Sbjct: 609 RDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHE 668

Query: 446 ACQFDRAFRLFRS 458
           A + D A R+F  
Sbjct: 669 AGKMDEATRVFEG 681


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 112/214 (52%), Gaps = 12/214 (5%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEV 311
           +PN+     +ID     G  +++  +Y+++  +++  +I+ ++SL+N    HD    L+ 
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD---RLDE 378

Query: 312 YKNMQKLGVMAD----MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            K+M +L +  D    + +YN L+K  C A       E++ E+      G    +  TY+
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG----NTVTYN 434

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           T+++    A    MA K+ + M+S GV P+ IT+S L++     G +E+A+ +FE + ++
Sbjct: 435 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
             EP+    NI+++   +A + +  + LF S +L
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 528



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 122/260 (46%), Gaps = 45/260 (17%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYM-KSRAIY 279
           + F   +  F K+  LV A + YD   K    P+++   ++I+  G C  D + +++ ++
Sbjct: 326 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN--GFCMHDRLDEAKHMF 383

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E + S++   N+  +N+L+     A  ++  +E+++ M + G++ +  +YN L++    A
Sbjct: 384 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQA 443

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL---------KVKED 388
           G+  +AQ+I+   K + + GV   D+ TYS ++         + AL         K++ D
Sbjct: 444 GDCDMAQKIF---KKMVSDGVPP-DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 499

Query: 389 MLS--------------------------AGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           + +                           GV PN I ++++I+     GL E+A  LF 
Sbjct: 500 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFR 559

Query: 423 EMLQAGCEPNSQCCNILLQA 442
           EM + G  PNS   N L++A
Sbjct: 560 EMKEDGTLPNSGTYNTLIRA 579



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 142/320 (44%), Gaps = 34/320 (10%)

Query: 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302
           +YD  +K   S N+ +   + D   + G+ ++SR +           +I  FN L++  A
Sbjct: 44  SYDYREKL--SRNVLLDLKLDDAVDLFGEMVQSRPLP----------SIVEFNKLLSAIA 91

Query: 303 HDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
              KF L +   + MQ L +  D+ SYNIL+   C      LA  + G++  L  +    
Sbjct: 92  KMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEP--- 148

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            D+ T S+++  +   K    A+ + + M      PNT+T+++LI+         +A+ L
Sbjct: 149 -DIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVAL 207

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
            + M+  GC+P+      ++    +    D A  L +     K +  +   Y    D + 
Sbjct: 208 IDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADV-VIYTTIIDALC 266

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMN 537
           N      +++ +  N      ++  D +   +P   TYN L++  C +Y R      L++
Sbjct: 267 NY-----KNVNDALNL-----FTEMDNK-GIRPNVVTYNSLIRCLC-NYGRWSDASRLLS 314

Query: 538 EMRTVGLSPNHISWTILIDA 557
           +M    ++PN ++++ LIDA
Sbjct: 315 DMIERKINPNVVTFSALIDA 334



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 6/227 (2%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K+ D+  AL      +K     ++ I  TIID      +   +  ++ ++ ++ +  N+ 
Sbjct: 232 KRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 291

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            +NSL+    N         +  +M +  +  ++ +++ L+ A    G  V A+++Y E+
Sbjct: 292 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 351

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
                K  +  D+FTYS+++  F        A  + E M+S    PN +T+++LI     
Sbjct: 352 ----IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCK 407

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           A  VE+ M LF EM Q G   N+   N L+Q   +A   D A ++F+
Sbjct: 408 AKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 134/311 (43%), Gaps = 26/311 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EV 311
           PN+    ++I      G +  +  +  D+  + +  N+  F++L++    + K     ++
Sbjct: 288 PNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 347

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK---LDVFTYST 368
           Y  M K  +  D+ +Y+ L+   C+        +   E KH+    + K    +V TY+T
Sbjct: 348 YDEMIKRSIDPDIFTYSSLINGFCM-------HDRLDEAKHMFELMISKDCFPNVVTYNT 400

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++K F  AK  +  +++  +M   G+  NT+T+++LI     AG  + A  +F++M+  G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
             P+    +ILL    +  + ++A  +F     SK +  +   Y  N   I  M    K 
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDI---YTYNI-MIEGMCKAGK- 515

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR--VKALMNEMRTVGLSP 546
            + +  +      + S   +   KP    Y  ++   C    +    AL  EM+  G  P
Sbjct: 516 -VEDGWDL-----FCSLSLK-GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLP 568

Query: 547 NHISWTILIDA 557
           N  ++  LI A
Sbjct: 569 NSGTYNTLIRA 579



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++ I++ + S  V  +I  ++ L++       L+  L V++ +QK  +  D+ +Y
Sbjct: 444 GDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTY 503

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           NI+++  C AG      +++     L  KGV K +V  Y+T++  F      + A  +  
Sbjct: 504 NIMIEGMCKAGKVEDGWDLFCS---LSLKGV-KPNVIIYTTMISGFCRKGLKEEADALFR 559

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +M   G  PN+ T+++LI A    G    +  L +EM   G
Sbjct: 560 EMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCG 600


>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 689

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 42/382 (10%)

Query: 112 SLEMVASGIVKSIREGR---IDCVVGVLKKLNELGVAPLEL----------FDGSGFKLL 158
           S + +A+G+ K+I+EG    +D V G   + NE  +  L L          FDG      
Sbjct: 37  SAKTLAAGVSKAIKEGNFNLLDSVYGSNLQRNETNLVLLSLESEPNSALDTFDGQRSDSF 96

Query: 159 KNECQ----------------RLLDSGEVEMFVGLMEVLEE--FRLPVKELDEEFRIVQL 200
              C+                 L   GEV   +    ++ E  FR+ +   ++  +   L
Sbjct: 97  DKLCRGGTVPFGVSAHGFVLDALFRKGEVTKALDFHRLVMERGFRVDIVSCNKILK--GL 154

Query: 201 CVNKPDVN---LAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY 257
            V++ +V    L++   C      + FC  +  F K+ ++  A   +   ++   +P++ 
Sbjct: 155 SVDQIEVASRMLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFELFKVMEQRGIAPDLI 214

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNM 315
              T+ID     G       ++     + V L++ VF+S ++V      L    +VYK M
Sbjct: 215 AYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRM 274

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
              G+  ++ +Y IL+K  C  G    A  IY ++     K  L+  V TYS+++  F  
Sbjct: 275 LCQGISPNVVTYTILIKGLCQDGRIYEAFGIYCQI----LKRGLEPSVVTYSSLIDGFCK 330

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
               +    + EDM+  G  P+ + +  L++     GL+  A+    + L     PN   
Sbjct: 331 YGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVV 390

Query: 436 CNILLQACVEACQFDRAFRLFR 457
            N L+       + D A ++FR
Sbjct: 391 FNSLIDGWCRLNRCDEALKVFR 412



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 148/336 (44%), Gaps = 27/336 (8%)

Query: 243 AYDASKKHLS---SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           A+D  K+ L    SPN+ +  TI+ + G+C  G   ++  IY  +  + +  ++  ++SL
Sbjct: 267 AFDVYKRMLCQGISPNV-VTYTIL-IKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSL 324

Query: 298 MN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++      +L+    +Y++M K+G   D+  Y +L+   C  G  ++   +   VK L  
Sbjct: 325 IDGFCKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLCKQG--LMLHALRFSVKTLGQ 382

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
              ++ +V  +++++  +        ALKV   M   G+ P+  T ++L+      G ++
Sbjct: 383 S--IRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLK 440

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
           + + LF  M + G EP++     L+ A  +  +     +LF     +K    +       
Sbjct: 441 EGLFLFFRMFKMGLEPDAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIPADIAV----- 495

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA- 534
            + + N+  K  QS+     F  N      +      P   TYN ++   C+     +A 
Sbjct: 496 CNVVINLLFKG-QSVEEASKFFNNLLEGKME------PDIVTYNTMICGYCSLRRLDEAA 548

Query: 535 -LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +   ++     PN ++ TILI     + +++GAL+
Sbjct: 549 RIFEMLKFTPFGPNAVTLTILIHTLCKNSDMDGALR 584



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 67/369 (18%), Positives = 141/369 (38%), Gaps = 67/369 (18%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + + + +  F K  +L S    Y+   K    P++ I   ++D  G+C   +   A+   
Sbjct: 319 VTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVD--GLCKQGLMLHALRFS 376

Query: 282 LRS--QNVTLNIYVFNSLMN-------------------------------------VNA 302
           +++  Q++  N+ VFNSL++                                     V  
Sbjct: 377 VKTLGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVME 436

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
             LK  L ++  M K+G+  D  ++  L+ A C      +  +++     L  +  +  D
Sbjct: 437 GRLKEGLFLFFRMFKMGLEPDAVAFCTLMDAFCKNMKPTIGLQLF----DLMQRNKIPAD 492

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           +   + ++ +    +  + A K   ++L   + P+ +T++++I    +   +++A  +FE
Sbjct: 493 IAVCNVVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTMICGYCSLRRLDEAARIFE 552

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
            +      PN+    IL+    +    D A R+     +S + +  G    G  D  +N+
Sbjct: 553 MLKFTPFGPNAVTLTILIHTLCKNSDMDGALRIISPSIISYSIIIDGLCKRGRVDEATNI 612

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMR 540
            H+                  + D +    P    Y IL++ CC     V+A  L   M 
Sbjct: 613 FHQ------------------AIDAKIL--PDVVAYAILIRGCCKVGRLVEAALLYEHML 652

Query: 541 TVGLSPNHI 549
             G+ P+ +
Sbjct: 653 RNGVKPDDL 661


>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
          Length = 854

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 11/209 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN+  C TI++  G C  G   ++   +  ++   V  N++VFNSL+   +N +D+    
Sbjct: 552 PNVRTCGTIVN--GYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVG 609

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           EV   M++ GV  D+ +++ L+ A    G+    +EIY ++     +G +  D+  +S +
Sbjct: 610 EVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDM----LEGGIDPDIHAFSIL 665

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-AG 428
            K +A A   + A ++   M   GV PN + ++ +I+   +AG +++AM ++++M    G
Sbjct: 666 AKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVG 725

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
             PN      L+    EA Q  +A  L +
Sbjct: 726 LSPNLTTYETLIWGFGEAKQPWKAEELLK 754



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 17/168 (10%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           K  + TY+T+V      K +   L +   +   G+ P+TI ++++INA + +G ++QAM 
Sbjct: 374 KPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 433

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           +FE+M ++GC+P +   N L++   +  + + + RL          + L ++     DR 
Sbjct: 434 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL--------DMMLRDEMLQPNDRT 485

Query: 480 SNMEHK---DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
            N+  +   +++ I    N V         + +  KP   T+N L KA
Sbjct: 486 CNILVQAWCNQRKIEEAWNIVYKM------QSYGVKPDVVTFNTLAKA 527



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 146/371 (39%), Gaps = 56/371 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I +   V    +++   S L      +K+   P+  +   II+     G+  ++  I+E 
Sbjct: 378 ITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEK 437

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM-----ASYNILLKACCL 336
           ++          FN+L  +  +     LE    +  + +  +M      + NIL++A C 
Sbjct: 438 MKESGCKPTASTFNTL--IKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC- 494

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM-----LS 391
             N    +E +  V  +++ GV K DV T++T+ K +A       +    EDM     L 
Sbjct: 495 --NQRKIEEAWNIVYKMQSYGV-KPDVVTFNTLAKAYARIG----STCTAEDMIIPRMLH 547

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
             V PN  T  +++N     G +E+A+  F  M + G  PN    N L++  +       
Sbjct: 548 NKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNI----- 602

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR--- 508
                              D DG  + +  ME    +    T + + N+  S  D +   
Sbjct: 603 ------------------NDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCE 644

Query: 509 --------FSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
                       P    ++IL K  A   +  + + ++N+MR  G+ PN + +T +I   
Sbjct: 645 EIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGW 704

Query: 559 GGSGNVEGALQ 569
             +G ++ A+Q
Sbjct: 705 CSAGEMKKAMQ 715



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 83/193 (43%), Gaps = 5/193 (2%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +F + ++ F    D+       D  ++    P++    T+++     GD  +   IY D+
Sbjct: 591 VFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDM 650

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
               +  +I+ F+ L      A + +   ++   M+K GV  ++  Y  ++   C AG  
Sbjct: 651 LEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEM 710

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A ++Y ++  +     L  ++ TY T++  F +AK    A ++ +DM    V P   T
Sbjct: 711 KKAMQVYKKMCGIVG---LSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKT 767

Query: 401 WSSLINACANAGL 413
              + +   + G+
Sbjct: 768 MQLIADGWKSIGV 780


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/379 (20%), Positives = 147/379 (38%), Gaps = 100/379 (26%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327
           GD   +RA +E++R++ +  N +VF SL++  A   D++  L   + M+  G+   + +Y
Sbjct: 256 GDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTY 315

Query: 328 NILL-----------------------------------KACCLAGNTVLAQEIYGEVKH 352
           +IL+                                    A C +GN   A+E+   V+ 
Sbjct: 316 SILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEEL---VRE 372

Query: 353 LEAKGV----------------------------------LKLDVFTYSTIVKVFADAKW 378
           +E  G+                                   K  + +Y  ++ ++     
Sbjct: 373 MEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGK 432

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              AL + ++M S G+  N  T+S LIN   +      A  +FEEML++G +P+    N+
Sbjct: 433 VAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNL 492

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVA------LGEDYDGNTDRISNMEHKDKQSITN 492
           L++A  +    DRA  +       + Q +      + E Y    D  S ++  D      
Sbjct: 493 LIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLD------ 546

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY--YRVKALMNEMRTVGLSPNHIS 550
                         +R    PT  TYN L+      +   R  +++++M   G++PN  +
Sbjct: 547 ------------LMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHT 594

Query: 551 WTILIDACGGSGNVEGALQ 569
           +TI++     SG++  A +
Sbjct: 595 YTIIMRGYAASGDIGKAFE 613



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 137/339 (40%), Gaps = 53/339 (15%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   K+ +I +++ S  +  N   ++ L+N  ++ HD      +++ M + G+  D A Y
Sbjct: 431 GKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIY 490

Query: 328 NILLKACCLAGN-------------------------TVLAQEIYGEVKH-LEAKGVLKL 361
           N+L++A C  GN                          +    + G++K  L+   +++ 
Sbjct: 491 NLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRR 550

Query: 362 D-----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
                 V TY+ ++         Q A+ V + M  AG+TPN  T++ ++   A +G + +
Sbjct: 551 SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGK 610

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK---TQVALGEDYD 473
           A   F ++ ++G + +      LL+AC ++ +   A  + R  +  K            D
Sbjct: 611 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILID 670

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYR 531
           G   R    E +D           PN H               TY   + ACC   D  R
Sbjct: 671 GWARRGDVWEAEDLMKQMKEDGVPPNIH---------------TYTSYINACCKAGDMQR 715

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
            + ++ EM  VGL PN  ++T LI         + AL+C
Sbjct: 716 AEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKC 754



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 114/273 (41%), Gaps = 41/273 (15%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  F K  ++  A+   +  +K    P+    R II+   + GD   +    + +R   
Sbjct: 493 LIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSG 552

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
               +  +N+L++  V  H ++  + V   M   G+  +  +Y I+++    +G+   A 
Sbjct: 553 CVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAF 612

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK------------------ 386
           E + ++K    +  LKLDV+ Y T+++    +   Q AL V                   
Sbjct: 613 EYFTKIK----ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 668

Query: 387 -------------EDMLSA----GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
                        ED++      GV PN  T++S INAC  AG +++A  + EEM+  G 
Sbjct: 669 IDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGL 728

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           +PN +    L++        DRA + F    L+
Sbjct: 729 KPNVKTYTTLIKGWARVSLPDRALKCFEEMKLA 761



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 93/190 (48%), Gaps = 6/190 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +PN +    I+      GD  K+   +  ++   + L++Y++ +L+     +  ++  L 
Sbjct: 589 TPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALA 648

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M    +  +   YNIL+      G+   A+++   +K ++  GV   ++ TY++ +
Sbjct: 649 VTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDL---MKQMKEDGVPP-NIHTYTSYI 704

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A   Q A KV E+M+  G+ PN  T+++LI   A   L ++A+  FEEM  AG +
Sbjct: 705 NACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLK 764

Query: 431 PNSQCCNILL 440
           P+    + L+
Sbjct: 765 PDEASYHCLV 774



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 91/182 (50%), Gaps = 6/182 (3%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           +R +    D+  A   +   K+     ++YI  T++  C   G    + A+  ++  Q +
Sbjct: 599 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKI 658

Query: 288 TLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             N +++N L++  A   D+    ++ K M++ GV  ++ +Y   + ACC AG+   A++
Sbjct: 659 PRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEK 718

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +  E+  +     LK +V TY+T++K +A       ALK  E+M  AG+ P+  ++  L+
Sbjct: 719 VIEEMVDVG----LKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV 774

Query: 406 NA 407
            +
Sbjct: 775 TS 776


>gi|218191860|gb|EEC74287.1| hypothetical protein OsI_09537 [Oryza sativa Indica Group]
          Length = 689

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 123/303 (40%), Gaps = 60/303 (19%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           D+M++R +  D  + +  L   +  S M   A       +V+  M + GV  +   YN +
Sbjct: 226 DHMRAREVVPDAHASSALLTA-LAKSRMTATAR------KVFDQMTRAGVAMNTHVYNAM 278

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           L  C  AG+  LA+ +   +  ++A GV  LD F+++T++ ++        A+ V+E M 
Sbjct: 279 LHVCLKAGDAALAESL---MTRMDAAGV-PLDRFSFNTVIALYCRKGMQYEAMCVRERME 334

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
           + GV  + +TW+SLI+       V++A  L  EM  AG  P+      L+     A   +
Sbjct: 335 NQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLE 394

Query: 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
            A +L             GE           ME                           
Sbjct: 395 EAVKL------------RGE-----------ME------------------------AMG 407

Query: 511 FKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             P   TYN +++  C D     V  L+NEM    +  +H++   LI+A    G++  AL
Sbjct: 408 MLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSAL 467

Query: 569 QCR 571
           + +
Sbjct: 468 KVK 470



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 109/238 (45%), Gaps = 6/238 (2%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
             K R   +A + +D   +   + N ++   ++ VC   GD   + ++   + +  V L+
Sbjct: 247 LAKSRMTATARKVFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESLMTRMDAAGVPLD 306

Query: 291 IYVFNSLMNVNAHD-LKF-TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            + FN+++ +     +++  + V + M+  GV AD+ ++N L+   C       A ++  
Sbjct: 307 RFSFNTVIALYCRKGMQYEAMCVRERMENQGVKADVVTWNSLIHGLCKERRVKEASQLLR 366

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E+    A   +  D  TY+T+V  +  A   + A+K++ +M + G+ P   T+++++   
Sbjct: 367 EM----AMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKL 422

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
              G +++   L  EM +   + +   CN L+ A  +      A ++ R    S  Q+
Sbjct: 423 CEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQL 480



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 90/206 (43%), Gaps = 6/206 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT-LEV 311
           +P+     T++D     GD  ++  +  ++ +  +   +  +N+++     D K   + V
Sbjct: 374 APDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNV 433

Query: 312 YKN-MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
             N M +  V AD  + N L+ A C  G+   A +    VK    +  L+LD FTY  +V
Sbjct: 434 LLNEMDERKVQADHVTCNTLINAYCKRGDMTSALK----VKRRMMESGLQLDQFTYKALV 489

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F  AK    A +   +M+ AG +PN    S +++   N       + + +E+++ G  
Sbjct: 490 HGFCKAKELDEAKEALFEMMGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRGFP 549

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
           P+      L++   +    D A  +F
Sbjct: 550 PDKAVYRSLIRRLCKKGFIDLAGNVF 575


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 117/261 (44%), Gaps = 21/261 (8%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +E++  M++ GV AD  +YN L+   C +G    A  +   ++ +  + ++  +V T++ 
Sbjct: 135 VELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARL---MRDMVMRDIVP-NVITFTA 190

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++ VF     +  A+K+ E+M    V P+  T++SLIN     G V++A  + + M+  G
Sbjct: 191 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 250

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           C P+    N L+    ++ + D   +LFR       Q  L  D       I       + 
Sbjct: 251 CLPDVVTYNTLINGFCKSKRVDEGTKLFREM----AQRGLVGDTITYNTIIQGYFQAGR- 305

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSP 546
                    P++    F  R   +P   TY+IL+   C ++   KAL+    M+   +  
Sbjct: 306 ---------PDAAQEIF-SRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIEL 355

Query: 547 NHISWTILIDACGGSGNVEGA 567
           +  ++ I+I      GNVE A
Sbjct: 356 DITTYNIVIHGMCKIGNVEDA 376



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 105/230 (45%), Gaps = 40/230 (17%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGV 320
           V G+C  G +  +  +  D+  +++  N+  F ++++V   + KF+  +++Y+ M +  V
Sbjct: 157 VAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCV 216

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             D+ +YN L+   C+ G    A+++   +  +  KG L  DV TY+T++  F  +K   
Sbjct: 217 DPDVFTYNSLINGLCMHGRVDEAKQM---LDLMVTKGCLP-DVVTYNTLINGFCKSKRVD 272

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGL--------------------------- 413
              K+  +M   G+  +TIT++++I     AG                            
Sbjct: 273 EGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGL 332

Query: 414 -----VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
                VE+A+ LFE M ++  E +    NI++    +    + A+ LFRS
Sbjct: 333 CMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRS 382



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 119/285 (41%), Gaps = 40/285 (14%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           V + +     +DL  +L  + +M+  G+  D+ SYNI++   C     V+A  + G++  
Sbjct: 16  VLSKIAKSKNYDLVISL--FHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKM-- 71

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
              K   + DV T S+++  F        A+ +   M   G  P+ + ++++I+     G
Sbjct: 72  --MKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIG 129

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
           LV  A+ LF+ M + G   ++   N L+     + ++  A RL R   +           
Sbjct: 130 LVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMR---------- 179

Query: 473 DGNTDRISNMEHKDKQSITNTP---NFVPNSHYSSFDK------RFSFKPTTTTYNILMK 523
               D + N+       IT T     FV    +S   K      R    P   TYN L+ 
Sbjct: 180 ----DIVPNV-------ITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLIN 228

Query: 524 ACCTDYYRV---KALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
             C  + RV   K +++ M T G  P+ +++  LI+    S  V+
Sbjct: 229 GLCM-HGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVD 272



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/246 (19%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           IVP   I F   +  F K+     A++ Y+   +    P+++   ++I+  G+C  G   
Sbjct: 181 IVPNV-ITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLIN--GLCMHGRVD 237

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +++ + + + ++    ++  +N+L+N    +  +    ++++ M + G++ D  +YN ++
Sbjct: 238 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 297

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           +    AG    AQEI+  +         + ++ TYS ++         + AL + E+M  
Sbjct: 298 QGYFQAGRPDAAQEIFSRMDS-------RPNIRTYSILLYGLCMNWRVEKALVLFENMQK 350

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           + +  +  T++ +I+     G VE A  LF  +   G +P+      ++       Q+D+
Sbjct: 351 SEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDK 410

Query: 452 AFRLFR 457
           +  L+R
Sbjct: 411 SDLLYR 416



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 7/116 (6%)

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           D R    T +I ++   MN         L +++NMQK  +  D+ +YNI++   C  GN 
Sbjct: 317 DSRPNIRTYSILLYGLCMNWRVEK---ALVLFENMQKSEIELDITTYNIVIHGMCKIGNV 373

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
             A +++   + L  KG LK DV +Y+T++  F   + W  +  +   M   G+ P
Sbjct: 374 EDAWDLF---RSLSCKG-LKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 425



 Score = 45.4 bits (106), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKAC 334
           +++  +    +  ++Y +N ++N      +F   L V   M K G   D+ + + L+   
Sbjct: 31  SLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGF 90

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C  GN V   +    V  +E  G  + DV  Y+TI+           A+++ + M   GV
Sbjct: 91  C-QGNRVF--DAIDLVSKMEEMG-FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGV 146

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             + +T++SL+     +G    A  L  +M+     PN      ++   V+  +F  A +
Sbjct: 147 RADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMK 206

Query: 455 LFRSWT 460
           L+   T
Sbjct: 207 LYEEMT 212


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 139/336 (41%), Gaps = 55/336 (16%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           L  + +  F K  D+  A+      + +  SP       +I   G  G   ++ AI+E+L
Sbjct: 329 LLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEEL 388

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           +   +      +N+L+   V    LK    +   M++ G   D  +Y++L+ A   AG  
Sbjct: 389 KEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRW 448

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A+ +   +K +EA GV + + + +S I+  + D   WQ + +V  +M ++GV+P+   
Sbjct: 449 ESARIV---LKEMEASGV-RPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHF 504

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++ +I+       ++ A+  F+ M   G +P++   N L+    ++   ++A  LF +  
Sbjct: 505 YNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQ 564

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
            S                                                  P TTTYNI
Sbjct: 565 ESGCS-----------------------------------------------PCTTTYNI 577

Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTIL 554
           ++ +      +  VK L+ +M++ GL  N +++T L
Sbjct: 578 MINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTL 613



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 120/292 (41%), Gaps = 59/292 (20%)

Query: 278 IYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           IY ++ S  + L+  + N ++     + D+   +     +Q  G+    A+   ++ A  
Sbjct: 314 IYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALG 373

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            AG T  A+ I+ E+K    +G L      Y+ ++K +      + A  +  +M  +G +
Sbjct: 374 NAGRTEEAEAIFEELK----EGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFS 429

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+  T+S LI+A ANAG  E A  + +EM  +G  PNS   + +L +  +  ++ ++F++
Sbjct: 430 PDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQV 489

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
            R    S                                   P+ H+             
Sbjct: 490 LREMRNSGVS--------------------------------PDRHF------------- 504

Query: 516 TTYNILM----KACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
             YN+++    K  C D+    A  + MR  G+ P+ ++W  LID    SG+
Sbjct: 505 --YNVMIDTFGKCNCLDH--ALATFDRMRMEGVQPDAVTWNTLIDCHCKSGH 552



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 102/217 (47%), Gaps = 23/217 (10%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN---AHDLKFTL 309
           SP+ +    +ID  G C     + A ++ +R + V  +   +N+L++ +    H  K   
Sbjct: 499 SPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNK-AE 557

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL----EAKGVLKLDVFT 365
           E+++ MQ+ G      +YNI++       N+   QE + +VK L    +++G+L  +V T
Sbjct: 558 ELFEAMQESGCSPCTTTYNIMI-------NSFGEQERWEDVKTLLGKMQSQGLLA-NVVT 609

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+T+          + A+     M + G+ P+ +  +SLINA        +A  + + M 
Sbjct: 610 YTTL-------GLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMK 662

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           +   +P+      L++A +   +FD+   ++   TLS
Sbjct: 663 ENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLS 699



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 102/235 (43%), Gaps = 16/235 (6%)

Query: 211 IRYACIVPRADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269
           +R + + P  D  F N  +  FGK   L  AL  +D  +     P+     T+ID     
Sbjct: 493 MRNSGVSP--DRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKS 550

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASY 327
           G + K+  ++E ++    +     +N ++N      ++     +   MQ  G++A++ +Y
Sbjct: 551 GHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTY 610

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             L           L+++     + + A G LK  V   ++++  F + +    A  V +
Sbjct: 611 TTL----------GLSEQAINAFRVMRADG-LKPSVLVLNSLINAFGEDRRDAEAFSVLQ 659

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            M    + P+ +T+++L+ A       ++   ++EEM  +GC P+ +   +L  A
Sbjct: 660 YMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAMLRSA 714


>gi|48716454|dbj|BAD23061.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           [Oryza sativa Japonica Group]
          Length = 580

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 123/303 (40%), Gaps = 60/303 (19%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           D+M++R +  D  + +  L   +  S M   A       +V+  M + GV  +   YN +
Sbjct: 134 DHMRAREVVPDAHASSALLTA-LAKSRMTATAR------KVFDQMTRAGVAMNTHVYNAM 186

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           L  C  AG+  LA+ +   +  ++A GV  LD F+++T++ ++        A+ V+E M 
Sbjct: 187 LHVCLKAGDAALAESL---MTRMDAAGV-PLDRFSFNTVIALYCRKGMQYEAMCVRERME 242

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
           + GV  + +TW+SLI+       V++A  L  EM  AG  P+      L+     A   +
Sbjct: 243 NQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLE 302

Query: 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
            A +L             GE           ME                           
Sbjct: 303 EAVKL------------RGE-----------ME------------------------AMG 315

Query: 511 FKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             P   TYN +++  C D     V  L+NEM    +  +H++   LI+A    G++  AL
Sbjct: 316 MLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSAL 375

Query: 569 QCR 571
           + +
Sbjct: 376 KVK 378



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 109/238 (45%), Gaps = 6/238 (2%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
             K R   +A + +D   +   + N ++   ++ VC   GD   + ++   + +  V L+
Sbjct: 155 LAKSRMTATARKVFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESLMTRMDAAGVPLD 214

Query: 291 IYVFNSLMNVNAHD-LKF-TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            + FN+++ +     +++  + V + M+  GV AD+ ++N L+   C       A ++  
Sbjct: 215 RFSFNTVIALYCRKGMQYEAMCVRERMENQGVKADVVTWNSLIHGLCKERRVKEASQLLR 274

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E+    A   +  D  TY+T+V  +  A   + A+K++ +M + G+ P   T+++++   
Sbjct: 275 EM----AMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKL 330

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
              G +++   L  EM +   + +   CN L+ A  +      A ++ R    S  Q+
Sbjct: 331 CEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQL 388



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 10/208 (4%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT-L 309
           +P+     T++D  G C  GD  ++  +  ++ +  +   +  +N+++     D K   +
Sbjct: 282 APDHVTYTTLVD--GYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEV 339

Query: 310 EVYKN-MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            V  N M +  V AD  + N L+ A C  G+   A +    VK    +  L+LD FTY  
Sbjct: 340 NVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSALK----VKRRMMESGLQLDQFTYKA 395

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +V  F  AK    A +   +M+ AG +PN    S +++   N       + + +E+++ G
Sbjct: 396 LVHGFCKAKELDEAKEALFEMMGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRG 455

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
             P+      L++   +    D A  +F
Sbjct: 456 FPPDKAVYRSLIRRLCKKGFIDLAGNVF 483


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 118/250 (47%), Gaps = 10/250 (4%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           +IL C     + K+  +  A+  +   ++H  +PN+     +I +    G    +   +E
Sbjct: 375 NILIC----AYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFE 430

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +  + +T NI V+ SL++      K+    E+   M   G+  +   +N ++ + C  G
Sbjct: 431 QMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEG 490

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
             + +++++     L  +  +K +V TYST++  +  A     A K+   M S G+ P+ 
Sbjct: 491 RVIESEKLF----DLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDC 546

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +T+++LIN       ++ A+ LF+EM+ +G  PN    NI+LQ      +   A  L+  
Sbjct: 547 VTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVG 606

Query: 459 WTLSKTQVAL 468
            T S TQ+ L
Sbjct: 607 ITKSGTQLEL 616



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 137/323 (42%), Gaps = 50/323 (15%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--L 309
           PN     +I+   G C       AI   + +RS  V  ++  +NSLM+    + + T   
Sbjct: 264 PNCMTYNSILH--GYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEAR 321

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +++ +M K G+  D+A+Y  LL+     G  V   E++  +  +   G+   D   ++ +
Sbjct: 322 KIFDSMTKRGLEPDIATYCTLLQGYATKGALV---EMHALLDLMVRNGI-HPDHHVFNIL 377

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +A  +    A+ V   M   G+ PN +T+ ++I     +G V+ AM  FE+M+  G 
Sbjct: 378 ICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGL 437

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            PN      L+ +    C FD+       W  ++  +               +E  D+  
Sbjct: 438 TPNIIVYTSLIHSL---CIFDK-------WDKAEELI---------------LEMLDRGI 472

Query: 490 ITNTPNF--VPNSHYSS---------FD--KRFSFKPTTTTYNILMKACCTDYYRVKA-- 534
             NT  F  + +SH            FD   R   KP   TY+ L+   C      +A  
Sbjct: 473 CLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATK 532

Query: 535 LMNEMRTVGLSPNHISWTILIDA 557
           L++ M +VG+ P+ +++  LI+ 
Sbjct: 533 LLSSMFSVGMKPDCVTYNTLING 555



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 108/216 (50%), Gaps = 6/216 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           +PN+ +  ++I    I   + K+  +  ++  + + LN   FNS+++ +  + +   + +
Sbjct: 438 TPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEK 497

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M ++GV  ++ +Y+ L+   CLAG    A ++   +  +     +K D  TY+T++
Sbjct: 498 LFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVG----MKPDCVTYNTLI 553

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +        AL + ++M+S+GV+PN IT++ ++    +      A  L+  + ++G +
Sbjct: 554 NGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQ 613

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
                 NI+L    +    D A R+F++  L+  Q+
Sbjct: 614 LELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 649



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 152/348 (43%), Gaps = 41/348 (11%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           S+P++    T+I+     GD  K+ + Y ++  + ++ ++  ++S++        +   +
Sbjct: 192 SAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAM 251

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           EV   M K GVM +  +YN +L   C   ++   +E  G +K + + GV + DV TY+++
Sbjct: 252 EVLTTMVKNGVMPNCMTYNSILHGYC---SSEQPKEAIGFLKKMRSDGV-EPDVVTYNSL 307

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+ + M   G+ P+  T+ +L+   A  G + +   L + M++ G 
Sbjct: 308 MDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGI 367

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGE------DYDGNTDRIS 480
            P+    NIL+ A  +  + D A  +F   R   L+   V  G             D + 
Sbjct: 368 HPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAML 427

Query: 481 NMEHKDKQSITNTPNFVPNSHYSS-------FDKRFSFKP------------TTTTYNIL 521
             E    + +  TPN +    Y+S       FDK    +              T  +N +
Sbjct: 428 YFEQMIDEGL--TPNIIV---YTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSI 482

Query: 522 MKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           + + C +   +++  L + M  +G+ PN I+++ LID    +G ++ A
Sbjct: 483 IHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEA 530



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 108/252 (42%), Gaps = 18/252 (7%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D+ SY  ++      G++  A   Y E+  L+ +  +  DV TYS+I+      + 
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSDKAYSTYHEM--LDRR--ISPDVVTYSSIIAALCKGQA 246

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A++V   M+  GV PN +T++S+++   ++   ++A+   ++M   G EP+    N 
Sbjct: 247 MDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNS 306

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           L+    +  +   A ++F S     T+  L  D       +        Q        V 
Sbjct: 307 LMDYLCKNGRSTEARKIFDSM----TKRGLEPDIATYCTLL--------QGYATKGALVE 354

Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILID 556
                    R    P    +NIL+ A        +A++  ++MR  GL+PN +++  +I 
Sbjct: 355 MHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIG 414

Query: 557 ACGGSGNVEGAL 568
               SG+V+ A+
Sbjct: 415 ILCKSGSVDDAM 426



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 93/213 (43%), Gaps = 6/213 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I F + +    K+  ++ + + +D   +    PN+    T+ID   + G   ++  +   
Sbjct: 477 IFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSS 536

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S  +  +   +N+L+N       +   L ++K M   GV  ++ +YNI+L+       
Sbjct: 537 MFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRR 596

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A+E+Y  +     K   +L++ TY+ I+           AL++ +++    +   T 
Sbjct: 597 TAAAKELYVGI----TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR 652

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           T++ +I A    G  ++A  LF      G  PN
Sbjct: 653 TFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPN 685



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 6/178 (3%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKAC 334
           A+++++ S  V+ NI  +N ++    H  +     E+Y  + K G   ++++YNI+L   
Sbjct: 567 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C    T  A  ++  +   +    L+L+  T++ ++           A  +     S G+
Sbjct: 627 CKNNLTDEALRMFQNLCLTD----LQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGL 682

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            PN  T+  +       GL+E+   LF  M   GC  +S   N +++  ++  +  RA
Sbjct: 683 VPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRA 740



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 125/331 (37%), Gaps = 57/331 (17%)

Query: 275 SRAIYEDLRSQNVTLNIYVFN-SLMNVNAHDLKFTLEVYKNMQKLG---VMADMASYNIL 330
           +R ++++L  +    +IY  N +L +V  H     +  Y  M + G   V   + +Y IL
Sbjct: 34  ARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYGIL 93

Query: 331 LKACCLAGNTVLAQEIYGEVK----HLEA-------KG-------------VLKL----- 361
           +  CC AG   L     G V      +EA       KG             VL+      
Sbjct: 94  IGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELS 153

Query: 362 ---DVFTYSTIVKVFADAKWWQMALKVKE---DMLSAGVTPNTITWSSLINACANAGLVE 415
              DVF+ + ++K   D    Q AL++     D    G  P+ ++++++IN     G  +
Sbjct: 154 CMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSD 213

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
           +A   + EML     P+    + ++ A  +    D+A  +    T+ K  V        N
Sbjct: 214 KAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL--TTMVKNGVM------PN 265

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCTDYYRVK 533
               +++ H    S        P        K  S   +P   TYN LM   C +    +
Sbjct: 266 CMTYNSILHGYCSSEQ------PKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTE 319

Query: 534 A--LMNEMRTVGLSPNHISWTILIDACGGSG 562
           A  + + M   GL P+  ++  L+      G
Sbjct: 320 ARKIFDSMTKRGLEPDIATYCTLLQGYATKG 350


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 152/340 (44%), Gaps = 20/340 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           ++F   +    K R +  AL  +   +     PN+    ++I      G +  +  +  D
Sbjct: 261 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 320

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  N+  FN+L++    + KF    ++Y +M K  +  D+ +YN L+   C+   
Sbjct: 321 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDR 380

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A++++   + + +K     DV TY+T++K F  +K  +   ++  +M   G+  +T+
Sbjct: 381 LDKAKQMF---EFMVSKDCFP-DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 436

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+++LI    + G  + A  +F++M+  G  P+    +ILL       + ++A  +F   
Sbjct: 437 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD-- 494

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
            + K+++ L  D    T  I  M    K  + +  +      + S   +   KP   TYN
Sbjct: 495 YMQKSEIKL--DIYIYTTMIEGMCKAGK--VDDGWDL-----FCSLSLK-GVKPNVVTYN 544

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
            ++   C+        AL+ +M+  G  PN  ++  LI A
Sbjct: 545 TMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRA 584



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 129/299 (43%), Gaps = 32/299 (10%)

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVM 321
           D  G+ G  +KSR +           +I  FN L++  A   KF   + + + MQ+L ++
Sbjct: 68  DAIGLFGGMVKSRPLP----------SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIV 117

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
             + +YNIL+   C      LA  + G++  L  +      + T S+++  +   K    
Sbjct: 118 HGLYTYNILINCFCRRSQISLALALLGKMMKLGYEP----SIVTLSSLLNGYCHGKRISD 173

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A+ + + M+  G  P+TIT+++LI+         +A+ L + M+Q GC+PN     +++ 
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 233

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              +    D A  L      +K +  +   ++   D +    H D     +  N      
Sbjct: 234 GLCKRGDTDLALNLLNKMEAAKIEADV-VIFNTIIDSLCKYRHVD-----DALNLFKEME 287

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILIDA 557
                     +P   TY+ L+   C+ Y R      L+++M    ++PN +++  LIDA
Sbjct: 288 TK------GIRPNVVTYSSLISCLCS-YGRWSDASQLLSDMIEKKINPNLVTFNALIDA 339



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 111/262 (42%), Gaps = 32/262 (12%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M + G   ++ +Y +++   C  G+T LA  +   +  +EA  + + DV  ++TI+    
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDTDLALNL---LNKMEAAKI-EADVVIFNTIIDSLC 271

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
             +    AL + ++M + G+ PN +T+SSLI+   + G    A  L  +M++    PN  
Sbjct: 272 KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 331

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             N L+ A V+  +F  A +L                YD    R  + +     S+ N  
Sbjct: 332 TFNALIDAFVKEGKFVEAEKL----------------YDDMIKRSIDPDIFTYNSLVN-- 373

Query: 495 NFVPNSHYSSFDKRFSFK------PTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLS 545
            F  +       + F F       P   TYN L+K  C    RV+    L  EM   GL 
Sbjct: 374 GFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKS-KRVEDGTELFREMSHRGLV 432

Query: 546 PNHISWTILIDACGGSGNVEGA 567
            + +++T LI      G+ + A
Sbjct: 433 GDTVTYTTLIQGLFHDGDCDNA 454



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++ +++ + S  V  +I  ++ L++   N   L+  LEV+  MQK  +  D+  Y
Sbjct: 449 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIY 508

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             +++  C AG      +++     L  KGV K +V TY+T++      +  Q A  + +
Sbjct: 509 TTMIEGMCKAGKVDDGWDLFCS---LSLKGV-KPNVVTYNTMISGLCSKRLLQEAYALLK 564

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            M   G  PN+ T+++LI A    G    +  L  EM
Sbjct: 565 KMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 601


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 16/260 (6%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M +LG + ++ SYNILLK  C    +  A E+   +   +  G    DV +Y+T++
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMP--DDGGDCPPDVVSYTTVI 206

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F        A     +ML  G+ PN +T+SS+I A   A  +++AM +   M++ G  
Sbjct: 207 NGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVM 266

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN +  N ++     + Q   A    +               DG    +           
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKM-----------HSDGVEPDVVTYNSLMDYLC 315

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK--ALMNEMRTVGLSPNH 548
            N         + S  KR   KP  TTY  L++   T    V+   L++ M   G+ PNH
Sbjct: 316 KNGRCTEARKMFDSMTKR-GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 374

Query: 549 ISWTILIDACGGSGNVEGAL 568
             ++ILI A    G V+ A+
Sbjct: 375 YVFSILICAYAKQGKVDQAM 394



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 9/205 (4%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD  K+   Y ++  + +  N+  ++S++     A  +   +EV  +M K GVM +  +Y
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N ++   C +G     +E  G +K + + GV + DV TY++++           A K+ +
Sbjct: 273 NSIVHGYCSSGQ---PKEAIGFLKKMHSDGV-EPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            M   G+ P   T+ +L+   A  G + +   L + M++ G  PN    +IL+ A  +  
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 448 QFDRAFRLF---RSWTLSKTQVALG 469
           + D+A  +F   R   L+   V  G
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYG 413



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 103/241 (42%), Gaps = 6/241 (2%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P   + +   +  F K+ DL  A   Y         PN+    +II          K+  
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +   +    V  N   +NS+++   ++   K  +   K M   GV  D+ +YN L+   C
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G    A++++  +     K  LK ++ TY T+++ +A          + + M+  G+ 
Sbjct: 316 KNGRCTEARKMFDSM----TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 371

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN   +S LI A A  G V+QAM +F +M Q G  P++     ++    ++ + + A R 
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 456 F 456
           F
Sbjct: 432 F 432



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 109/241 (45%), Gaps = 16/241 (6%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC-GICGDYMK 274
           I+P   + + + +    K + +  A+    +  K+   PN   CRT   +  G C     
Sbjct: 230 ILPNV-VTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN---CRTYNSIVHGYCSSGQP 285

Query: 275 SRAI--YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNIL 330
             AI   + + S  V  ++  +NSLM+    + + T   +++ +M K G+  ++ +Y  L
Sbjct: 286 KEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           L+     G  V   E++G +  +   G+   + + +S ++  +A       A+ V   M 
Sbjct: 346 LQGYATKGALV---EMHGLLDLMVRNGI-HPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
             G+ P+T+T+ ++I     +G VE AM  FE+M+     P +   N L+ +    C FD
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS---LCIFD 458

Query: 451 R 451
           +
Sbjct: 459 K 459


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 121/277 (43%), Gaps = 32/277 (11%)

Query: 289 LNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           LN+ +FN+++   +    L    E+Y+ M   G   D  +Y+IL+   C  G    A  +
Sbjct: 309 LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRL 368

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
              ++ +E KG    +V TY+ ++  F     W     + E+M + G+T N+  ++ +I 
Sbjct: 369 ---LREMEKKGFAP-NVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIY 424

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           A    G +++AM L +EM   GC P+    N ++       Q + A  +F +  L +  V
Sbjct: 425 ALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFEN-LLEEGVV 483

Query: 467 ALGEDYDG------NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
           A G  Y+          R  +     K+ I          H  S D          +YN 
Sbjct: 484 ANGITYNTIIHALLRDGRWQDAVRLAKEMIL---------HGCSLD--------VVSYNG 526

Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILI 555
           L+KA C D    R   L+ EM   G+ PN++S+ ILI
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILI 563



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 108/215 (50%), Gaps = 9/215 (4%)

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           SA+R     +K   +PN+     ++      G +  +RA+ E++ ++ +TLN   +N ++
Sbjct: 364 SAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMI 423

Query: 299 NVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                D +    + + + M+  G   D+ SYN ++   C   N    +E     ++L  +
Sbjct: 424 YALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLC---NNEQMEEAEHMFENLLEE 480

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           GV+  +  TY+TI+        WQ A+++ ++M+  G + + ++++ LI A    G V++
Sbjct: 481 GVVA-NGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDR 539

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           ++ L EEM + G +PN+   NIL+    E C+  R
Sbjct: 540 SLVLLEEMAEKGIKPNNVSYNILIS---ELCKERR 571



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 141/328 (42%), Gaps = 40/328 (12%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           N+ +  T+I  C   G   ++  +YE +  +    + + ++ LM+       +   + + 
Sbjct: 310 NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLL 369

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M+K G   ++ +Y I+L + C  G   +  +    ++ + AKG L L+   Y+ ++  
Sbjct: 370 REMEKKGFAPNVVTYTIVLHSFCKNG---MWDDTRALLEEMSAKG-LTLNSQGYNGMIYA 425

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                    A+ + ++M S G  P+  +++++I    N   +E+A H+FE +L+ G   N
Sbjct: 426 LCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVAN 485

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTL--------SKTQVALGEDYDGNTDR-ISNME 483
               N ++ A +   ++  A RL +   L        S   +      DGN DR +  +E
Sbjct: 486 GITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLE 545

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK---ALMNEMR 540
              ++ I                     KP   +YNIL+   C +  RV+    L  +M 
Sbjct: 546 EMAEKGI---------------------KPNNVSYNILISELCKE-RRVRDALELSKQML 583

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGAL 568
             GL+P+ +++  LI+     G +  AL
Sbjct: 584 NQGLAPDIVTYNTLINGLCKMGWMHAAL 611



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E+L  + V  N   +N++++    D ++   + + K M   G   D+ SYN L+KA C
Sbjct: 473 MFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMC 532

Query: 336 LAGNT----VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
             GN     VL +E+        A+  +K +  +Y+ ++      +  + AL++ + ML+
Sbjct: 533 KDGNVDRSLVLLEEM--------AEKGIKPNNVSYNILISELCKERRVRDALELSKQMLN 584

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            G+ P+ +T+++LIN     G +  A++L E++      P+    NIL+
Sbjct: 585 QGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 633



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKL 318
           TII      G +  +  + +++     +L++  +N L+     D  +  +L + + M + 
Sbjct: 491 TIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEK 550

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  +  SYNIL+   C       A E+    K +  +G L  D+ TY+T++       W
Sbjct: 551 GIKPNNVSYNILISELCKERRVRDALELS---KQMLNQG-LAPDIVTYNTLINGLCKMGW 606

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
              AL + E + +  V P+ IT++ LI+      L++ A  L    + A C
Sbjct: 607 MHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVC 657



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 108/290 (37%), Gaps = 33/290 (11%)

Query: 271 DYMKSR-AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM-QKLGVMADMASYN 328
           D +  R  +    RS NV L++     L   + H     L +Y+ M  +  V     ++ 
Sbjct: 127 DQLPRRFGVQPSFRSYNVVLSV-----LARADCH--ADALALYRRMVHRDRVPPTTFTFG 179

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           +  +A C  G    A E    ++ +   G +  D   Y T++    D      A  +  +
Sbjct: 180 VAARALCRLGR---ADEALALLRGMARHGCVP-DAVLYQTVIHALCDQGGVTEAATLLNE 235

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           ML  G   +  T+  ++      G V +A  L + M+  GC P       LLQ      Q
Sbjct: 236 MLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQ 295

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
            D A  +     + +  V L     G    ++  +  +   +  T               
Sbjct: 296 ADEARAMLGR--VPELNVVLFNTVIGGC--LAEGKLAEATELYETMGLK----------- 340

Query: 509 FSFKPTTTTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILI 555
              +P   TY+ILM   C    R+ +   L+ EM   G +PN +++TI++
Sbjct: 341 -GCQPDAHTYSILMHGLC-KLGRIGSAVRLLREMEKKGFAPNVVTYTIVL 388


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 158/355 (44%), Gaps = 50/355 (14%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTL 289
            G  RDL+  ++    S+  L + N Y     I V G C   ++K  A   +L +QN  L
Sbjct: 259 LGDARDLLMDMK----SRGLLPNRNTYN----ILVYGYCKMGWLKEAANVIELMTQNNLL 310

Query: 290 -NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
            +++ +N L+N   N   ++   ++   M+ L ++ D+ SYN L+  C L  + +   E 
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGC-LEWSKI--SEA 367

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
           +  ++ +  KGV K +  T++ +VK +        A      M  +G +P+ +T+++LIN
Sbjct: 368 FKLLEEMSEKGV-KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLIN 426

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW------- 459
               AG + +A    +EM +   + +S   N +L+      + + A++L  S        
Sbjct: 427 GYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFI 486

Query: 460 -TLSKTQVALGEDYDGNTDRISNM--EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
             +S   + +G   DGN DR   +  E K+K+ I                      P+T 
Sbjct: 487 DEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEII----------------------PSTV 524

Query: 517 TYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           TYN ++   C      +A+  +NE+   GL P+  ++  ++      G+VE A Q
Sbjct: 525 TYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQ 579



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 130/320 (40%), Gaps = 57/320 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312
           SP+     T+I+     G+  ++    +++  +N+ ++    N+++     + K   E Y
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLE-EAY 473

Query: 313 K---NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           K   + +K G   D  SY  L+      GN   A +++ E+K  E    +     TY+ I
Sbjct: 474 KLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKE----IIPSTVTYNCI 529

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + A+    ++L +G+ P+  T++++++     G VE+A     +M++   
Sbjct: 530 IGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSF 589

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +P+   CNILL+        ++A +LF +W      V+ G+  D                
Sbjct: 590 KPDVFTCNILLRGLCMEGMLEKALKLFNTW------VSKGKAID---------------- 627

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPN 547
                                    T TYN L+ + C +     A  L++EM    L P+
Sbjct: 628 -------------------------TVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPD 662

Query: 548 HISWTILIDACGGSGNVEGA 567
           H ++  +I A   SG +  A
Sbjct: 663 HYTYNAIITALTDSGRIREA 682


>gi|224004246|ref|XP_002295774.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209585806|gb|ACI64491.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 600

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 11/178 (6%)

Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD 304
           DA+  H   P++ + +T++      G Y K  ++   +R + V  N+Y +NSL+N+ A D
Sbjct: 166 DATSVHDCGPSLNVYQTVLTALAQGGQYDKVMSLLTKMRRRQVRPNVYTYNSLLNICAKD 225

Query: 305 ----LKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
                K  L +    Q+  G+  D+ +Y   ++AC  A  +  A EI+  +  +     +
Sbjct: 226 RTPRWKEALSLLSQCQREPGINPDLVTYTTAMRACAQARKSNKAMEIFRVINDMG----M 281

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDML--SAGVTPNTITWSSLINACANAGLVE 415
           +LDV+ Y+T +   A  + W+ ALK+ EDM   S  +  N IT++S I+A A A   E
Sbjct: 282 ELDVYCYTTAMDACAKDRNWKTALKLLEDMTMRSTNMRINAITYNSAISALAKAARSE 339



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 33/229 (14%)

Query: 359 LKLDVFTYSTIVKVFADAKW--WQMALKV-KEDMLSAGVTPNTITWSSLINACANAGLVE 415
           ++ +V+TY++++ + A  +   W+ AL +  +     G+ P+ +T+++ + ACA A    
Sbjct: 208 VRPNVYTYNSLLNICAKDRTPRWKEALSLLSQCQREPGINPDLVTYTTAMRACAQARKSN 267

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE-DYDG 474
           +AM +F  +   G E +  C    + AC +   +  A +L    T+  T + +    Y+ 
Sbjct: 268 KAMEIFRVINDMGMELDVYCYTTAMDACAKDRNWKTALKLLEDMTMRSTNMRINAITYNS 327

Query: 475 NTDRISNMEHKDKQSITNTPNFVPN-----SHYSSFD-------------KRFSFKPTTT 516
               IS +    +        F  N      H  + D             ++   K    
Sbjct: 328 A---ISALAKAARSESRQQRRFDYNKDDETDHAQNSDILWRRALDLIECMEKEGVKRDVF 384

Query: 517 TYNILMKAC--------CTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           TY+  +  C        C  +     L NEM+  GL P+ +S+  L+ A
Sbjct: 385 TYSAAISTCGAAAACGNCGQWDAAYELFNEMKLDGLQPDLVSYNALVGA 433


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 112/281 (39%), Gaps = 55/281 (19%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           V   LM +     K     Y+ + + G  A +  +NIL+   C  G+ ++AQ ++  +  
Sbjct: 96  VLEHLMKLKY--FKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAI-- 151

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
              K  L+  V +++T++  +          ++K  M ++GV P+  T+S LIN      
Sbjct: 152 --TKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKES 209

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            ++ A  +F+EML  G  PN      L+    +  + D A  ++                
Sbjct: 210 KMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY---------------- 253

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYY 530
                         KQ ++                  S  P   TYN L+   C   D  
Sbjct: 254 --------------KQMLSQ-----------------SLXPDLITYNTLIYGLCKKGDLK 282

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           +   L++EM   GL P+ I++T LID C   G++E A + R
Sbjct: 283 QAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHR 323



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 146/357 (40%), Gaps = 33/357 (9%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DI +F   +  + +   L  A   Y  +++H        CR +++       +     
Sbjct: 52  RSDIYVFSGLITAYLESGFLRDAXECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 111

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YE++       ++Y FN LM+      D+     V+  + K G+   + S+N L+    
Sbjct: 112 FYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYI 171

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 172 RLGD---MDEGFRLKNAMHASGV-QPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLV 227

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++LI+     G V+ AM ++++ML     P+    N L+    +     +A  L
Sbjct: 228 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDL 287

Query: 456 FRSWT---LSKTQVALGEDYDG---NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
               +   L   ++      DG     D  +  EH+ K+ I                   
Sbjct: 288 IDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHR-KRMIQE----------------- 329

Query: 510 SFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
             +     Y  L+   C +  Y   + ++ EM +VGL P+  ++T++I+     G+V
Sbjct: 330 XIRLDDVAYTALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDV 386



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 6/214 (2%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           C  P +   F   +  F K+ D++ A   ++A  K    P++    T+++     GD  +
Sbjct: 119 CGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDE 178

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
              +   + +  V  ++Y ++ L+N    + K     E++  M   G++ +  ++  L+ 
Sbjct: 179 GFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLID 238

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G   LA EIY ++        L  D+ TY+T++         + A  + ++M   
Sbjct: 239 GHCKNGRVDLAMEIYKQM----LSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMK 294

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           G+ P+ IT+++LI+ C   G +E A    + M+Q
Sbjct: 295 GLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQ 328



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +  IY+ + SQ++  ++  +N+L+       DLK   
Sbjct: 228 PNGVTFTTLID--GHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAH 285

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   M   G+  D  +Y  L+  CC  G+     E   E +    +  ++LD   Y+ +
Sbjct: 286 DLIDEMSMKGLKPDKITYTTLIDGCCKEGDL----ETAFEHRKRMIQEXIRLDDVAYTAL 341

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +      + +  A KV  +MLS G+ P+T T++ +IN     G V     L +EM
Sbjct: 342 ISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEM 396



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 96/231 (41%), Gaps = 38/231 (16%)

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           LE KG  + D++ +S ++  + ++ + + A +         +T     W    + C    
Sbjct: 45  LETKGTQRSDIYVFSGLITAYLESGFLRDAXECYR------LTREHKFWVPF-DTCRK-- 95

Query: 413 LVEQAMHL---------FEEMLQAGCEPNSQCCNILLQA-CVEACQF--DRAFRLFRSWT 460
           ++E  M L         +EE+L+ G   +    NIL+   C E         F     W 
Sbjct: 96  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWG 155

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
           L  + V+     +G   R+ +M+   +         + N+ ++S       +P   TY++
Sbjct: 156 LRPSVVSFNTLMNGYI-RLGDMDEGFR---------LKNAMHAS-----GVQPDVYTYSV 200

Query: 521 LMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L+   C +     A  + +EM   GL PN +++T LID    +G V+ A++
Sbjct: 201 LINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 251


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 95/196 (48%), Gaps = 8/196 (4%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGV 320
           +CG C  G  M++  +  ++  +N+  NIY +N+L++    +  +K +  +   M K GV
Sbjct: 192 ICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGV 251

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             D+  Y+IL+   CL G    A++I+     +  +  +  DV++Y+ I+      K   
Sbjct: 252 KPDVVIYSILMDGYCLVGEVQKAKQIF----LVMVQTGVNPDVYSYNIIINGLCKGKRVD 307

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A+ +  +ML   + P+T+T+SSLI+     G +   + L +EM   G   N    N LL
Sbjct: 308 EAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLL 367

Query: 441 QACVEACQFDRAFRLF 456
               +    D+A  LF
Sbjct: 368 DGLCKNQNLDKAIALF 383



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 21/256 (8%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++Y  M   G+  D+ +Y  L+   CLAG  +   E +G +  +  K +   +++TY+T+
Sbjct: 171 DLYSEMNARGIFPDVITYTTLICGFCLAGQLM---EAFGLLNEMILKNI-NPNIYTYNTL 226

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + +  +   M   GV P+ + +S L++     G V++A  +F  M+Q G 
Sbjct: 227 IDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGV 286

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            P+    NI++    +  + D A  L R   L K  +     Y    D +  +       
Sbjct: 287 NPDVYSYNIIINGLCKGKRVDEAMNLLREM-LHKNMIPDTVTYSSLIDGLCKLGR----- 340

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTT-TTYNILMKACCTDYY--RVKALMNEMRTVGLSP 546
           IT   +     H+         +P    TYN L+   C +    +  AL  +M+  G+ P
Sbjct: 341 ITTILDLTKEMHHRG-------QPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQP 393

Query: 547 NHISWTILIDA-CGGS 561
           N  ++T LID  C G 
Sbjct: 394 NKYTYTALIDGLCKGG 409



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 120/293 (40%), Gaps = 30/293 (10%)

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNIL 330
           M+++ I  DL    VTL+I     L+N   H   + F+  V   + KLG   +    N L
Sbjct: 36  MEAKGIVPDL----VTLSI-----LINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTL 86

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +K  CL G    +   + +V    A+G  ++D  +Y  ++         + A+K+   + 
Sbjct: 87  MKGLCLKGEVKKSLHFHDKV---VAQG-FQMDQVSYGILLNGLCKIGETRCAIKLLRTIE 142

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
                P+ + +S++I+      LV++A  L+ EM   G  P+      L+     A Q  
Sbjct: 143 DRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLM 202

Query: 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
            AF L     L      +   Y+   D +   E K K+S           +  +   +  
Sbjct: 203 EAFGLLNEMILKNINPNI-YTYNTLIDTLCK-EGKVKES----------KNLLAVMTKKG 250

Query: 511 FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA-CGG 560
            KP    Y+ILM   C   +  + K +   M   G++P+  S+ I+I+  C G
Sbjct: 251 VKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKG 303



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 25/222 (11%)

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K +EAKG++  D+ T S ++  F        +  V   +L  G  PNTI  ++L+     
Sbjct: 34  KQMEAKGIVP-DLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCL 92

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ---VA 467
            G V++++H  ++++  G + +     ILL    +  +   A +L R+     T+   V 
Sbjct: 93  KGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVM 152

Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--YSSFDKRFSFKPTTTTYNILMKAC 525
                DG          KDK         V  ++  YS  + R  F P   TY  L+   
Sbjct: 153 YSTIIDGLC--------KDK--------LVDEAYDLYSEMNARGIF-PDVITYTTLICGF 195

Query: 526 CTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           C     ++A  L+NEM    ++PN  ++  LID     G V+
Sbjct: 196 CLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVK 237



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 101/242 (41%), Gaps = 31/242 (12%)

Query: 197 IVQLCVNKPDV---NLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS 253
           +VQ  VN PDV   N+ I   C   R D    N +RE   K  +                
Sbjct: 281 MVQTGVN-PDVYSYNIIINGLCKGKRVDEAM-NLLREMLHKNMI---------------- 322

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P+     ++ID  G+C  G       + +++  +    N+  +NSL++      +L   +
Sbjct: 323 PDTVTYSSLID--GLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAI 380

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            ++  M++ G+  +  +Y  L+   C  G     Q ++   +HL  KG   +DV+TY+ +
Sbjct: 381 ALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALF---QHLLVKGYC-IDVWTYTVM 436

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +        +  AL +K  M   G  PN +T+  +I +       ++A  L  EM+  G 
Sbjct: 437 ISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGL 496

Query: 430 EP 431
            P
Sbjct: 497 LP 498



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 100/209 (47%), Gaps = 10/209 (4%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT-- 308
           +P++Y    II+  G+C       A  +  ++  +N+  +   ++SL++      + T  
Sbjct: 287 NPDVYSYNIIIN--GLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTI 344

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L++ K M   G  A++ +YN LL   C   N   A  ++ ++K    +G+ + + +TY+ 
Sbjct: 345 LDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKE---RGI-QPNKYTYTA 400

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++         +    + + +L  G   +  T++ +I+     G+ ++A+ +  +M   G
Sbjct: 401 LIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNG 460

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
           C PN+    I++++ +E  + D+A +L  
Sbjct: 461 CIPNAVTFEIIIRSLLEKDENDKAEKLLH 489


>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 145/329 (44%), Gaps = 27/329 (8%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVF 294
           DLV  L  Y A +  +  PN+ I   ++      GD   +  + +++R+   +  N+  +
Sbjct: 254 DLVRKLLLY-AKRSLVYKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITY 312

Query: 295 NSLMNVNAHD--LKFTLEVYKNM-QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           ++LM+    +  LK   E+++ M  K  ++ D  +YN+L+   C  G    A+ +   ++
Sbjct: 313 STLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNV---IE 369

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            ++  G    +VF YS +V     A   Q A  V  +M S+G+ P+ IT++SLIN  +  
Sbjct: 370 FMKNNGCCP-NVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRN 428

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
           G +++A+ L  EM +  C+ ++   N++L       +FD A  +          +  G  
Sbjct: 429 GQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSY 488

Query: 472 YDGNTDRISNMEHKDKQSITN---TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
                    N E +    +     +  FVP  HY+            T+  +L++ C   
Sbjct: 489 RIVLNSLTQNCELRKANKLLGLMLSRGFVP--HYA------------TSNELLVRLCKEG 534

Query: 529 YYRVKAL-MNEMRTVGLSPNHISWTILID 556
                A  + ++  +G  P H SW +LID
Sbjct: 535 MANDAATALFDLVDMGFQPQHDSWELLID 563


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 157/380 (41%), Gaps = 35/380 (9%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDA-SKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           P   + +   V  +  + +L +A++  D  + K L S N  +  ++I +    G    + 
Sbjct: 284 PPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLES-NATVYTSVIALLCNKGQVSDAL 342

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            + ED+    V L+  VF ++++   +  DL     +++ MQK G+ AD  ++  L+   
Sbjct: 343 RVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGL 402

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C AG    A  +  E   +  KG L +DV TY+ ++  +        A +V  +M+   V
Sbjct: 403 CRAGELKEADRVLQE---MVDKG-LDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRV 458

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PN +T+++L +     G V  A  L  EM   G E N    N L+    +    ++A R
Sbjct: 459 APNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMR 518

Query: 455 L-------------FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN-- 499
           +             +   TL  T    GE +D   + +  M  K  +    T N + N  
Sbjct: 519 IMTEMEAAGHRTDVYTYTTLIDTLCKSGE-FDRAHNMLQEMLDKGIKPSIATYNVLMNGF 577

Query: 500 --SHYSSFDKRF-------SFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNH 548
             S      K+        + +P   TYN LMK  C D        +   M +  ++PN 
Sbjct: 578 CMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNE 637

Query: 549 ISWTILIDACGGSGNVEGAL 568
            ++ ILI     + N++ AL
Sbjct: 638 NTYNILIKGHCKARNMKEAL 657



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMA 322
           G C  G     + + E +  +NV  N+  +NSLM     D  +K T E+YK M    V  
Sbjct: 576 GFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAP 635

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           +  +YNIL+K  C A N  + + +Y   + +E KG L+L   +YS ++++    K +  A
Sbjct: 636 NENTYNILIKGHCKARN--MKEALYFHQEMIE-KG-LRLTASSYSALIRLLNKKKKFSEA 691

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
               + M + G+T     +S  ++   N   +E  + L +E+++A
Sbjct: 692 RVFFDKMRNEGLTAEPDVYSFYMDISFNEDNLESTITLCDELVEA 736



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 126/295 (42%), Gaps = 23/295 (7%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           A++ +L  +NV  +  +  +L++  A  LK   +  ++  ++    D+ +Y  ++   C+
Sbjct: 245 ALFRELPDKNVCSHNILLKALLS--AGRLK---DACQHFDEMSSPPDVVTYGTMVHGYCV 299

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G    A ++  E   + AKG L+ +   Y++++ +  +      AL+V EDM   GV  
Sbjct: 300 RGELENAVKLLDE---MAAKG-LESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVAL 355

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           + + ++++I+   + G +  A  LFEEM + G   +      L+     A +   A R+ 
Sbjct: 356 DAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVL 415

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
           +        V  G D D  T  +    +  + ++          H     +R +  P   
Sbjct: 416 QEM------VDKGLDVDVVTYTVLIDGYCKRGNMVEAFRV----HNEMVGRRVA--PNVV 463

Query: 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           TY  L    C   D      L++EM   GL  N  ++  LI+     GN+E A++
Sbjct: 464 TYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMR 518


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 135/310 (43%), Gaps = 29/310 (9%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           P +    ++ID  G+C  G     + + +++       ++  +N L++    + +    L
Sbjct: 368 PTIASYNSLID--GLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEAL 425

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            V   M K GV  ++ +YN ++   CL  N  +A++I+  +     K  L+ D+  Y+ +
Sbjct: 426 GVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRM----VKSGLEPDILNYNVL 481

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  +   +    A+ + ++M    + P+  +++SLI+   N G +     L +EM  +G 
Sbjct: 482 INGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQ 541

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG--EDYDGNTDRISNMEHKDK 487
            P+    NILL A  +   FD+A  LFR       Q+  G   D+  N   + N+   +K
Sbjct: 542 SPDVITYNILLDAFCKTQPFDKAISLFR-------QIVEGIWPDFYTNHAIVDNLCKGEK 594

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLS 545
             +          H  S        P   TY IL+ A C D  +     L+++M      
Sbjct: 595 LKMAEDALKHLLMHGCS--------PNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRP 646

Query: 546 PNHISWTILI 555
           P+ I++ I+I
Sbjct: 647 PDAITFEIII 656



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 153/358 (42%), Gaps = 29/358 (8%)

Query: 211 IRYACIVPRADI---LFCNFVREFGKK----RDLVSALRAYDASKKHLSSPNMYICRTII 263
           IRYA  +P+  I    F +F  +   K    R++  A+  ++   +    P   +   ++
Sbjct: 5   IRYA--IPKFSISSRFFGHFQPQNPHKNCRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLL 62

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVM 321
                 G Y  + +++  L+S+ ++ +I  F  L+N   H     F   +   + K G  
Sbjct: 63  GAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQ 122

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            ++ ++N ++   C+ G    A +     ++L A+G L  D FTY T++   +     + 
Sbjct: 123 PNLVTFNTIINGFCINGMIFKALDF---CQNLLAQGYL-FDQFTYGTLINGLSKNGQIKA 178

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           AL + ++M  + V PN + +S+LI+     G V  A+ L  ++ + G   ++   N L+ 
Sbjct: 179 ALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLID 238

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
            C    ++    +L              +DY  N   + +   K+ + +           
Sbjct: 239 GCCSVGRWQEVTQLLTKMVRENVD---PDDYTFNI--LIDALCKEGRILE------AQGV 287

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
            +   KR   KP   TYN LM+  C+  + +  + L N M   GL P+ +++ +LID 
Sbjct: 288 LAMMSKRGE-KPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDG 344



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 137/343 (39%), Gaps = 55/343 (16%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           PN+    TII+   I G   K+    ++L +Q    + + + +L+N  + +  +K  L +
Sbjct: 123 PNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHL 182

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M+K  V  ++  Y+ L+   C  G      +  G    +  +G+L LD  TY++++ 
Sbjct: 183 LQEMEKSSVQPNLVMYSALIDGLCKDG---FVSDALGLCSQIGERGIL-LDAVTYNSLID 238

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL------------------ 413
                  WQ   ++   M+   V P+  T++ LI+A    G                   
Sbjct: 239 GCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKP 298

Query: 414 -----------------VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
                            V +A  LF  M++ G EP+    N+L+    +    D A  LF
Sbjct: 299 DIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLF 358

Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
           +    +K  V     Y+   D + N        I++    +   H S      +  P   
Sbjct: 359 KELC-NKNLVPTIASYNSLIDGLCN-----SGRISHVKKLLDEMHGS------AQPPDVV 406

Query: 517 TYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDA 557
           TYNIL+ A C +   ++AL  +  M   G+ PN +++  ++D 
Sbjct: 407 TYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDG 449



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 9/193 (4%)

Query: 267 GICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G C   M   AI  ++++R +N+  +I  +NSL++   N   +    E+   M   G   
Sbjct: 484 GYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSP 543

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+ +YNILL A C       A  ++ ++     +G+   D +T   IV      +  +MA
Sbjct: 544 DVITYNILLDAFCKTQPFDKAISLFRQI----VEGIWP-DFYTNHAIVDNLCKGEKLKMA 598

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
               + +L  G +PN  T++ LINA    G   +AM L  +M      P++    I++  
Sbjct: 599 EDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGV 658

Query: 443 CVEACQFDRAFRL 455
            ++  + D+A +L
Sbjct: 659 LLQRNETDKAEKL 671


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 144/343 (41%), Gaps = 35/343 (10%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P +     IID   +C + + + A+  +  +RS  ++  +  +NSL+    N+   K   
Sbjct: 242 PEVVSYSIIID--SLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQAS 299

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            ++K M +  +  D+ +++IL+ A C  G  + A  ++G++  +     ++ D+ TYS++
Sbjct: 300 ILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQI----AMEPDIVTYSSL 355

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +     +  W+ +  +  +MLS  + P+ +T+S  ++     G+V +A  +   M++ G 
Sbjct: 356 IHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGL 415

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFR------------SWTLSKTQVALGEDYDGNTD 477
            PN    N L+       Q D A ++F             S+ +        E  D    
Sbjct: 416 RPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQ 475

Query: 478 RISNMEHKD--KQSITNTPNFV-------PNSHYSSFDKRFSF--KPTTTTYNILMKACC 526
               M HK     SIT+T           P +    F K  S    P   TY+ L+   C
Sbjct: 476 LFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFC 535

Query: 527 TDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              +     AL   ++   L PNH+   IL+     +G +E A
Sbjct: 536 KHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDA 578



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 107/214 (50%), Gaps = 6/214 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEV 311
           P++      +DV    G   ++++I   +  + +  N+  +NSLM+       +    +V
Sbjct: 382 PDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKV 441

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M   G   D+ SYNIL+K  C +     A++++ E+ H   KG L  +  T++T++ 
Sbjct: 442 FDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSH---KG-LTPNSITHTTLIS 497

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               A     A ++ + M S G  P+ IT+S+L++     G +++A+ LFE + ++  +P
Sbjct: 498 GLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKP 557

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           N   C ILL    +A + + A  LF S ++ + Q
Sbjct: 558 NHVICKILLGGMCKAGKLEDAKELFSSLSIEELQ 591



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 132/319 (41%), Gaps = 53/319 (16%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           +IY  +    V+ ++Y    L+N   + H +     V   + KLG    + ++N L+   
Sbjct: 125 SIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGL 184

Query: 335 CLAGNTVLAQEIYGEVKHLEAKG------------------------------VLKLD-- 362
           C+ G  V A E   ++ ++ ++G                              +++LD  
Sbjct: 185 CIEGRIVEAME---QLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCE 241

Query: 363 --VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
             V +YS I+      +    A+ +   M S G++P  +T++SLI    N+G  +QA  L
Sbjct: 242 PEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASIL 301

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
           F+EML+   +P+    +IL+ A  +      A  +F        Q+A+  D    +  I 
Sbjct: 302 FKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFG----KMIQIAMEPDIVTYSSLIH 357

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNE 538
            +    K S+    + + N   S      + +P   T++I +   C        ++++N 
Sbjct: 358 GV---CKSSLWKESSTLLNEMLSR-----NIRPDVVTFSIWVDVFCKKGMVSEAQSIINL 409

Query: 539 MRTVGLSPNHISWTILIDA 557
           M   GL PN +++  L+D 
Sbjct: 410 MIERGLRPNVVTYNSLMDG 428



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 117/249 (46%), Gaps = 12/249 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YMKSRAIY 279
           + F   V    K+  ++ AL  +    +    P++    ++I   G+C    + +S  + 
Sbjct: 315 VTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIH--GVCKSSLWKESSTLL 372

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
            ++ S+N+  ++  F+  ++V      +     +   M + G+  ++ +YN L+   CL 
Sbjct: 373 NEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLH 432

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
                A++++  + +   KG    DV +Y+ ++K +  ++    A ++ ++M   G+TPN
Sbjct: 433 SQMDEARKVFDIMVN---KGCAP-DVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPN 488

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           +IT ++LI+    AG    A  LF++M   GC P+    + LL    +    D A  LF 
Sbjct: 489 SITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFE 548

Query: 458 SWTLSKTQV 466
           +  L K+Q+
Sbjct: 549 A--LKKSQL 555



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 43/217 (19%), Positives = 94/217 (43%), Gaps = 7/217 (3%)

Query: 219 RADIL-FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R D++ F  +V  F KK  +  A    +   +    PN+    +++D   +     ++R 
Sbjct: 381 RPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARK 440

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++ + ++    ++  +N L+     +  +    +++  M   G+  +  ++  L+   C
Sbjct: 441 VFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLC 500

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            AG    A+E++   K + + G    D+ TYST++  F        AL + E +  + + 
Sbjct: 501 QAGRPYAAKELF---KKMGSHGCPP-DLITYSTLLSGFCKHGHLDEALALFEALKKSQLK 556

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           PN +    L+     AG +E A  LF  +     +P+
Sbjct: 557 PNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPD 593


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 114/241 (47%), Gaps = 7/241 (2%)

Query: 219 RADILFCNFVRE-FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R DI+  N + E +GKKR L  A   Y A  +    P       ++      G   ++  
Sbjct: 172 RPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEG 231

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +  ++R   +  N  V+N+ ++  + A   +  +EVY+ M++    A+  ++ +++    
Sbjct: 232 VISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYG 291

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            A   + + +++ E+K +  K     ++ TY+ +V  FA     + A +V E+M  AG  
Sbjct: 292 KAKQPMSSMKVFNEMKSIGCKP----NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHE 347

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+   +++L+ A + AGL + A  +F  M   GCEP+    NIL+ A   A   + A  +
Sbjct: 348 PDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAV 407

Query: 456 F 456
           F
Sbjct: 408 F 408



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 115/246 (46%), Gaps = 12/246 (4%)

Query: 202 VNKPD-VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICR 260
           +NK + + +A+  A  VP  D  +   +R +     L  A       ++H   PN  +  
Sbjct: 191 LNKAESIYMALLEAQCVPTEDT-YALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYN 249

Query: 261 TIID--VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
             +D  +   C +  K+  +Y+ ++ +    N   F  ++NV   A     +++V+  M+
Sbjct: 250 AYLDGLLKARCTE--KAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMK 307

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
            +G   ++ +Y  L+ A    G    A+E++ E++    +   + DV+ Y+ +++ ++ A
Sbjct: 308 SIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ----QAGHEPDVYAYNALMEAYSRA 363

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
              Q A ++   M   G  P+  +++ L++A   AGL E A  +FEE+ Q G  P  +  
Sbjct: 364 GLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSH 423

Query: 437 NILLQA 442
            +LL A
Sbjct: 424 MLLLAA 429



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 7/199 (3%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLG 319
           ++D  G  G +  + A++E+L+ + ++  +     L+  +A     T   EV   + K G
Sbjct: 391 LVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSG 450

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           +  D  + N +L A   AG     + ++     +E +G    DV TY+  V  +  A + 
Sbjct: 451 LTPDTFALNAMLNAYARAGRLDDMERLFAA---MERRG--DADVGTYNVAVNAYGRAGYV 505

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
                    + + G+  + +TW++ + A A      + + + EEM+ AGC P++    +L
Sbjct: 506 GRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVL 565

Query: 440 LQACVEACQFDRAFRLFRS 458
           L AC +  Q ++   + RS
Sbjct: 566 LAACSDERQVEQVTAIVRS 584



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 20/214 (9%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
            + D+  Y+ +++ +   +    A  +   +L A   P   T++ L+ A  NAG + +A 
Sbjct: 171 FRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAE 230

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478
            +  EM + G  PN+   N  L   ++A   ++A  +++     + +         NT+ 
Sbjct: 231 GVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRA--------NTET 282

Query: 479 IS---NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA- 534
            +   N+  K KQ +++   F       +  K    KP   TY  L+ A   +    KA 
Sbjct: 283 FTLMINVYGKAKQPMSSMKVF-------NEMKSIGCKPNICTYTALVNAFAREGLCEKAE 335

Query: 535 -LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            +  EM+  G  P+  ++  L++A   +G  +GA
Sbjct: 336 EVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGA 369



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 105/266 (39%), Gaps = 22/266 (8%)

Query: 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA 220
           E Q+     +V  +  LME      LP +   E F ++Q    +PD            RA
Sbjct: 340 EMQQAGHEPDVYAYNALMEAYSRAGLP-QGASEIFSLMQHMGCEPD------------RA 386

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
              +   V  +G+      A   ++  K+   SP M     ++      G+  +   +  
Sbjct: 387 S--YNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMA 444

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            L    +T + +  N+++N    A  L     ++  M++ G  AD+ +YN+ + A   AG
Sbjct: 445 QLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRGD-ADVGTYNVAVNAYGRAG 503

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
                +          A   L  DV T++  +  +A  K +   + + E+M+ AG  P+ 
Sbjct: 504 YVGRMEA----AFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDA 559

Query: 399 ITWSSLINACANAGLVEQAMHLFEEM 424
            T   L+ AC++   VEQ   +   M
Sbjct: 560 GTARVLLAACSDERQVEQVTAIVRSM 585


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 107/269 (39%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+ + + G  A +  +NIL+   C  G+  +AQ ++  +     K  L+  V 
Sbjct: 104 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI----TKWGLRPSVV 159

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +           +K  ML++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 160 SYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEM 219

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  ++                            
Sbjct: 220 LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY---------------------------- 251

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  +   L++EM   
Sbjct: 252 --KQMLSQ-----------------SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVK 292

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ I++T LI+ C   G+++ A + R
Sbjct: 293 GLKPDKITYTTLINGCCKEGDLDSAFEHR 321



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 150/359 (41%), Gaps = 37/359 (10%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DI +F   +  + +   L  A+  Y  +++H        CR +++       +     
Sbjct: 50  RSDIYVFSGLIAAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 109

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YE++       ++Y FN LM+      D++    V+  + K G+   + SYN L+    
Sbjct: 110 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 169

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 170 RXGDL---DEGFXLKSXMLASGV-QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 225

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++LI+     G V+ AM ++++ML     P+    N L+    +     +A  L
Sbjct: 226 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 285

Query: 456 FRSWT--------LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
               +        ++ T +  G   +G+ D  S  EH+ +    N               
Sbjct: 286 IDEMSVKGLKPDKITYTTLINGCCKEGDLD--SAFEHRKRMIQEN--------------- 328

Query: 508 RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
               +     Y  L+   C +   V A  ++ EM +VGL P+  ++T++I+     G+V
Sbjct: 329 ---IRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDV 384



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 6/214 (2%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           C  P +   F   +  F K  D+  A   +DA  K    P++    T+++     GD  +
Sbjct: 117 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDE 176

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
              +   + +  V  ++Y ++ L+N    + K     E++  M   G++ +  ++  L+ 
Sbjct: 177 GFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLID 236

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G   LA EIY ++        L  D+ TY+T++         + A  + ++M   
Sbjct: 237 GHCKNGRVDLAMEIYKQM----LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVK 292

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           G+ P+ IT+++LIN C   G ++ A    + M+Q
Sbjct: 293 GLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQ 326



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +  IY+ + SQ+++ ++  +N+L+       DLK   
Sbjct: 226 PNGVTFTTLID--GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 283

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +   M   G+  D  +Y  L+  CC  G+   A E     K +  + + +LD   Y+ +
Sbjct: 284 HLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFE---HRKRMIQENI-RLDEVAYTAL 339

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +MLS G+ P+  T++ +IN     G V     L +EM + G 
Sbjct: 340 ISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGH 399

Query: 430 EPNSQCCNILLQA 442
            P+    N+L+  
Sbjct: 400 VPSVVTYNVLMNG 412


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 121/277 (43%), Gaps = 32/277 (11%)

Query: 289 LNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           LN+ +FN+++   +    L    E+Y+ M   G   D  +Y+IL+   C  G    A  +
Sbjct: 293 LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRL 352

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
              ++ +E KG    +V TY+ ++  F     W     + E+M + G+T N+  ++ +I 
Sbjct: 353 ---LREMEKKGFAP-NVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIY 408

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           A    G +++AM L +EM   GC P+    N ++       Q + A  +F +  L +  V
Sbjct: 409 ALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFEN-LLEEGVV 467

Query: 467 ALGEDYDG------NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
           A G  Y+          R  +     K+ I          H  S D          +YN 
Sbjct: 468 ANGITYNTIIHALLRDGRWQDAVRLAKEMIL---------HGCSLD--------VVSYNG 510

Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILI 555
           L+KA C D    R   L+ EM   G+ PN++S+ ILI
Sbjct: 511 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILI 547



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 108/215 (50%), Gaps = 9/215 (4%)

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           SA+R     +K   +PN+     ++      G +  +RA+ E++ ++ +TLN   +N ++
Sbjct: 348 SAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMI 407

Query: 299 NVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                D +    + + + M+  G   D+ SYN ++   C   N    +E     ++L  +
Sbjct: 408 YALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLC---NNEQMEEAEHMFENLLEE 464

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           GV+  +  TY+TI+        WQ A+++ ++M+  G + + ++++ LI A    G V++
Sbjct: 465 GVVA-NGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDR 523

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           ++ L EEM + G +PN+   NIL+    E C+  R
Sbjct: 524 SLVLLEEMAEKGIKPNNVSYNILIS---ELCKERR 555



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 141/328 (42%), Gaps = 40/328 (12%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           N+ +  T+I  C   G   ++  +YE +  +    + + ++ LM+       +   + + 
Sbjct: 294 NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLL 353

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M+K G   ++ +Y I+L + C  G   +  +    ++ + AKG L L+   Y+ ++  
Sbjct: 354 REMEKKGFAPNVVTYTIVLHSFCKNG---MWDDTRALLEEMSAKG-LTLNSQGYNGMIYA 409

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                    A+ + ++M S G  P+  +++++I    N   +E+A H+FE +L+ G   N
Sbjct: 410 LCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVAN 469

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTL--------SKTQVALGEDYDGNTDR-ISNME 483
               N ++ A +   ++  A RL +   L        S   +      DGN DR +  +E
Sbjct: 470 GITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLE 529

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK---ALMNEMR 540
              ++ I                     KP   +YNIL+   C +  RV+    L  +M 
Sbjct: 530 EMAEKGI---------------------KPNNVSYNILISELCKE-RRVRDALELSKQML 567

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGAL 568
             GL+P+ +++  LI+     G +  AL
Sbjct: 568 NQGLAPDIVTYNTLINGLCKMGWMHAAL 595



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E+L  + V  N   +N++++    D ++   + + K M   G   D+ SYN L+KA C
Sbjct: 457 MFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMC 516

Query: 336 LAGNT----VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
             GN     VL +E+        A+  +K +  +Y+ ++      +  + AL++ + ML+
Sbjct: 517 KDGNVDRSLVLLEEM--------AEKGIKPNNVSYNILISELCKERRVRDALELSKQMLN 568

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            G+ P+ +T+++LIN     G +  A++L E++      P+    NIL+
Sbjct: 569 QGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 617



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKL 318
           TII      G +  +  + +++     +L++  +N L+     D  +  +L + + M + 
Sbjct: 475 TIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEK 534

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  +  SYNIL+   C       A E+    K +  +G L  D+ TY+T++       W
Sbjct: 535 GIKPNNVSYNILISELCKERRVRDALELS---KQMLNQG-LAPDIVTYNTLINGLCKMGW 590

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
              AL + E + +  V P+ IT++ LI+      L++ A  L    + A C
Sbjct: 591 MHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVC 641



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 88/235 (37%), Gaps = 24/235 (10%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           ++ +  +A C  G    A E    ++ +   G +  D   Y T++    D      A  +
Sbjct: 161 TFGVAARALCRLGR---ADEALALLRGMARHGCVP-DAVLYQTVIHALCDQGGVTEAATL 216

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             +ML  G   +  T+  ++      G V +A  L + M+  GC P       LLQ    
Sbjct: 217 LNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCR 276

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
             Q D A  +     + +  V L     G    ++  +  +   +  T            
Sbjct: 277 VRQADEARAMLGR--VPELNVVLFNTVIGGC--LAEGKLAEATELYETMGLK-------- 324

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDA 557
                 +P   TY+ILM   C    R+ +   L+ EM   G +PN +++TI++ +
Sbjct: 325 ----GCQPDAHTYSILMHGLC-KLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHS 374


>gi|15232243|ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g60050
 gi|7076758|emb|CAB75920.1| putative protein [Arabidopsis thaliana]
 gi|332646485|gb|AEE80006.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 473

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 130/321 (40%), Gaps = 68/321 (21%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY------VFNSLMNVNAHDLKFT 308
           N+ IC      CG  G  +  +A+ + ++S+      +      + NSL+ V  +  K  
Sbjct: 188 NLLICS-----CGEAG--LAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQY--KLI 238

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
             VYK M + G   D+ +YNILL      G       ++ E+    A+     D +TY+ 
Sbjct: 239 EWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEM----ARDGFSPDSYTYNI 294

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++ +         AL     M   G+ P+ + +++LI+  + AG +E   +  +EM++AG
Sbjct: 295 LLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAG 354

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           C P+  C  +++   V + + D+A  +FR  T+ K Q+                      
Sbjct: 355 CRPDVVCYTVMITGYVVSGELDKAKEMFREMTV-KGQL---------------------- 391

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
                                   P   TYN +++  C   ++     L+ EM + G +P
Sbjct: 392 ------------------------PNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNP 427

Query: 547 NHISWTILIDACGGSGNVEGA 567
           N + ++ L+     +G +  A
Sbjct: 428 NFVVYSTLVSYLRKAGKLSEA 448



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 90/189 (47%), Gaps = 6/189 (3%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-- 299
           R +D   +   SP+ Y    ++ + G     + +      ++   +  ++  + +L++  
Sbjct: 275 RLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGL 334

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
             A +L+        M K G   D+  Y +++    ++G    A+E++ E   +  KG L
Sbjct: 335 SRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFRE---MTVKGQL 391

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             +VFTY+++++    A  ++ A  + ++M S G  PN + +S+L++    AG + +A  
Sbjct: 392 P-NVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARK 450

Query: 420 LFEEMLQAG 428
           +  EM++ G
Sbjct: 451 VIREMVKKG 459



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 6/182 (3%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLK--FTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++++     + + Y +N L+++     K    L    +M+++G+   +  Y  L+    
Sbjct: 276 LFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLS 335

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            AGN    +    E+     K   + DV  Y+ ++  +  +     A ++  +M   G  
Sbjct: 336 RAGNLEACKYFLDEM----VKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQL 391

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN  T++S+I     AG   +A  L +EM   GC PN    + L+    +A +   A ++
Sbjct: 392 PNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKV 451

Query: 456 FR 457
            R
Sbjct: 452 IR 453


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 16/260 (6%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M +LG + ++ SYNILLK  C    +  A E+   +   +  G    DV +Y+T++
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMP--DDGGDCPPDVVSYTTVI 206

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F        A     +ML  G+ PN +T++S+I A   A  +++AM +   M++ G  
Sbjct: 207 NGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVM 266

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN +  N ++     + Q   A    +               DG    +           
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKM-----------HSDGVEPDVVTYNSLMDYLC 315

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK--ALMNEMRTVGLSPNH 548
            N         + S  KR   KP  TTY  L++   T    V+   L++ M   G+ PNH
Sbjct: 316 KNGRCTEARKMFDSMTKR-GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 374

Query: 549 ISWTILIDACGGSGNVEGAL 568
             ++ILI A    G V+ A+
Sbjct: 375 YVFSILICAYAKQGKVDQAM 394



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 145/325 (44%), Gaps = 31/325 (9%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD  K+   Y ++  + +  N+  +NS++     A  +   +EV  +M K GVM +  +Y
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N ++   C +G     +E  G +K + + GV + DV TY++++           A K+ +
Sbjct: 273 NSIVHGYCSSGQ---PKEAIGFLKKMHSDGV-EPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            M   G+ P   T+ +L+   A  G + +   L + M++ G  PN    +IL+ A  +  
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 448 QFDRAFRLF---RSWTLSKTQVALGEDYD--GNTDRISNMEHKDKQSITN--TP-NFVPN 499
           + D+A  +F   R   L+   V  G        + R+ +     +Q I    +P N V N
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYN 448

Query: 500 SHYSS---FDKRFSFKP------------TTTTYNILMKACCTDYYRVKA--LMNEMRTV 542
           S   S   FDK    K              T  +N ++ + C +   +++  L + M  +
Sbjct: 449 SLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRI 508

Query: 543 GLSPNHISWTILIDACGGSGNVEGA 567
           G+ PN I+++ LID    +G ++ A
Sbjct: 509 GVKPNIITYSTLIDGYCLAGKMDEA 533



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 156/373 (41%), Gaps = 53/373 (14%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC-GICGDYMK 274
           I+P   + + + +    K + +  A+    +  K+   PN   CRT   +  G C     
Sbjct: 230 ILPNV-VTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPN---CRTYNSIVHGYCSSGQP 285

Query: 275 SRAI--YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNIL 330
             AI   + + S  V  ++  +NSLM+    + + T   +++ +M K G+  ++ +Y  L
Sbjct: 286 KEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           L+     G  V   E++G +  +   G+   + + +S ++  +A       A+ V   M 
Sbjct: 346 LQGYATKGALV---EMHGLLDLMVRNGI-HPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
             G+ P+T+T+ ++I     +G VE AM  FE+M+     P +   N L+ +    C FD
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS---LCIFD 458

Query: 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF--VPNSHYSS---- 504
           +       W  +K  +               +E  D+    +T  F  + +SH       
Sbjct: 459 K-------WDKAKELI---------------LEMLDRGICLDTIFFNSIIDSHCKEGRVI 496

Query: 505 -----FD--KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILI 555
                FD   R   KP   TY+ L+   C      +A  L+  M +VG+ P+ +++  LI
Sbjct: 497 ESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLI 556

Query: 556 DACGGSGNVEGAL 568
           +       +E AL
Sbjct: 557 NGYCKISRMEDAL 569



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 116/253 (45%), Gaps = 18/253 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           IL C + ++ GK   +  A+  +   ++   +P+     T+I +    G    +   +E 
Sbjct: 379 ILICAYAKQ-GK---VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQ 434

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF------TLEVYKNMQKLGVMADMASYNILLKACC 335
           +  + ++    V+NSL+    H L          E+   M   G+  D   +N ++ + C
Sbjct: 435 MIDERLSPGNIVYNSLI----HSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G  + +++++     L  +  +K ++ TYST++  +  A     A K+   M+S G+ 
Sbjct: 491 KEGRVIESEKLF----DLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ +T+++LIN       +E A+ LF EM  +G  P+    NI+LQ   +  +   A  L
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606

Query: 456 FRSWTLSKTQVAL 468
           +   T S TQ+ L
Sbjct: 607 YVGITESGTQLEL 619



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 110/229 (48%), Gaps = 6/229 (2%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A+R ++       SP   +  ++I    I   + K++ +  ++  + + L+   FNS+++
Sbjct: 428 AMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID 487

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
            +  + +   + +++  M ++GV  ++ +Y+ L+   CLAG    A ++   +  +    
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVG--- 544

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            +K D  TY+T++  +      + AL +  +M S+GV+P+ IT++ ++           A
Sbjct: 545 -MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAA 603

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
             L+  + ++G +      NI+L    +    D A R+F++  L+  Q+
Sbjct: 604 KELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 147/330 (44%), Gaps = 23/330 (6%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           ++G++D  + V  K+ + G+ P  +  G+   +L   C+    SG VE  +   E + + 
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL---CK----SGRVEDAMRYFEQMIDE 438

Query: 185 RLPVKELDEEFRIVQLCV-NKPD------VNLAIRYACIVPRADILFCNFVREFGKKRDL 237
           RL    +     I  LC+ +K D      + +  R  C+     I F + +    K+  +
Sbjct: 439 RLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL---DTIFFNSIIDSHCKEGRV 495

Query: 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           + + + +D   +    PN+    T+ID   + G   ++  +   + S  +  +   +N+L
Sbjct: 496 IESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 298 MN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           +N       ++  L +++ M+  GV  D+ +YNI+L+       T  A+E+Y  +     
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI----T 611

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +   +L++ TY+ I+           AL++ +++    +   T T++ +I A    G  +
Sbjct: 612 ESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRND 671

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
           +A  LF  +   G  P+ +  +++ +  +E
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIE 701


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 127/291 (43%), Gaps = 20/291 (6%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLG-VMADMASYNIL 330
           K+ AI+  ++++        +NS++ +  H+ ++    E+Y  M   G    D  +Y+ L
Sbjct: 177 KAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSAL 236

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           + A C  G    A ++  E+K    +   K+    Y+ +V +F        AL + E+M 
Sbjct: 237 ISAFCKLGRRDSAIQLLNEMKDNGMQPTTKI----YTMLVALFFKLNDVHGALSLFEEMR 292

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
                P+  T++ LI     AG +++A H F EM + GC P++   N ++    +A + D
Sbjct: 293 HQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLD 352

Query: 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
            A +LF+      T   +      NT   +  E K + S    P++          K   
Sbjct: 353 DAMKLFQEMG---TLRCIPSVVTYNTIIKALFESKSRAS--EVPSWFERM------KESG 401

Query: 511 FKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACG 559
             P++ TY+IL+   C      KA+M   EM   G  P   ++  LIDA G
Sbjct: 402 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 452



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 32/246 (13%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           FC   R     RD  SA++  +  K +   P   I   ++ +     D   + +++E++R
Sbjct: 240 FCKLGR-----RD--SAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMR 292

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            Q    +++ +  L+     A  +      +  MQ+ G   D    N ++     AG   
Sbjct: 293 HQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLD 352

Query: 342 LAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAK--------WWQMALKVKEDMLS 391
            A +++ E+      G L+    V TY+TI+K   ++K        W+       E M  
Sbjct: 353 DAMKLFQEM------GTLRCIPSVVTYNTIIKALFESKSRASEVPSWF-------ERMKE 399

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           +G++P++ T+S LI+       +E+AM L EEM + G  P       L+ A  +A ++D 
Sbjct: 400 SGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 459

Query: 452 AFRLFR 457
           A  LF+
Sbjct: 460 ACELFQ 465


>gi|410109917|gb|AFV61038.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           diamantinensis]
          Length = 284

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 53/267 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+ + + G  A +  +NIL+   C  G+  +AQ ++  +     K  L+  V 
Sbjct: 68  FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI----TKWGLRPSVV 123

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  ML++GV P+  ++S LIN       ++ A  LF+EM
Sbjct: 124 SYNTLMNGYXRLGDLDEGFRLKSAMLASGVQPDVYSYSVLINGLCKESKMDDANELFDEM 183

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  +++   LS+                     
Sbjct: 184 LVKGLAPNGVTFTTLIDGHCKKGRVDLAMEIYKR-MLSQ--------------------- 221

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
                                    S  P   TYN L+   C   D  +   L++EM   
Sbjct: 222 -------------------------SLLPDLITYNTLIYGLCKKGDLKQANDLIDEMGMK 256

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
           GL P+ I++T LID C   GN++ A +
Sbjct: 257 GLKPDKITYTTLIDGCCKEGNLDTAFE 283



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 10/189 (5%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++++++ +    +  ++  +N+LMN      DL     +   M   GV  D+ SY
Sbjct: 101 GDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYXRLGDLDEGFRLKSAMLASGVQPDVYSY 160

Query: 328 NILLKACCLAGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           ++L+   C       A E++ E  VK L   GV      T++T++          +A+++
Sbjct: 161 SVLINGLCKESKMDDANELFDEMLVKGLAPNGV------TFTTLIDGHCKKGRVDLAMEI 214

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + MLS  + P+ IT+++LI      G ++QA  L +EM   G +P+      L+  C +
Sbjct: 215 YKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMGMKGLKPDKITYTTLIDGCCK 274

Query: 446 ACQFDRAFR 454
               D AF 
Sbjct: 275 EGNLDTAFE 283



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 6/206 (2%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           C  P +   F   +  F K  D+  A   +DA  K    P++    T+++     GD  +
Sbjct: 81  CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYXRLGDLDE 140

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
              +   + +  V  ++Y ++ L+N    + K     E++  M   G+  +  ++  L+ 
Sbjct: 141 GFRLKSAMLASGVQPDVYSYSVLINGLCKESKMDDANELFDEMLVKGLAPNGVTFTTLID 200

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G   LA EIY   K + ++ +L  D+ TY+T++         + A  + ++M   
Sbjct: 201 GHCKKGRVDLAMEIY---KRMLSQSLLP-DLITYNTLIYGLCKKGDLKQANDLIDEMGMK 256

Query: 393 GVTPNTITWSSLINACANAGLVEQAM 418
           G+ P+ IT+++LI+ C   G ++ A 
Sbjct: 257 GLKPDKITYTTLIDGCCKEGNLDTAF 282


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 117/261 (44%), Gaps = 21/261 (8%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +E++  M++ GV AD  +YN L+   C +G    A  +   ++ +  + ++  +V T++ 
Sbjct: 194 VELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARL---MRDMVMRDIVP-NVITFTA 249

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++ VF     +  A+K+ E+M    V P+  T++SLIN     G V++A  + + M+  G
Sbjct: 250 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 309

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           C P+    N L+    ++ + D   +LFR       Q  L  D       I       + 
Sbjct: 310 CLPDVVTYNTLINGFCKSKRVDEGTKLFR----EMAQRGLVGDTITYNTIIQGYFQAGR- 364

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSP 546
                    P++    F  R   +P   TY+IL+   C ++   KAL+    M+   +  
Sbjct: 365 ---------PDAAQEIF-SRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIEL 414

Query: 547 NHISWTILIDACGGSGNVEGA 567
           +  ++ I+I      GNVE A
Sbjct: 415 DITTYNIVIHGMCKIGNVEDA 435



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 105/230 (45%), Gaps = 40/230 (17%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGV 320
           V G+C  G +  +  +  D+  +++  N+  F ++++V   + KF+  +++Y+ M +  V
Sbjct: 216 VAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCV 275

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             D+ +YN L+   C+ G    A+++   +  +  KG L  DV TY+T++  F  +K   
Sbjct: 276 DPDVFTYNSLINGLCMHGRVDEAKQM---LDLMVTKGCLP-DVVTYNTLINGFCKSKRVD 331

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGL--------------------------- 413
              K+  +M   G+  +TIT++++I     AG                            
Sbjct: 332 EGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGL 391

Query: 414 -----VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
                VE+A+ LFE M ++  E +    NI++    +    + A+ LFRS
Sbjct: 392 CMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRS 441



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 40/285 (14%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           V + +     +DL  +L  + +M+  G+  D+ SYNI++   C     V+A  + G++  
Sbjct: 75  VLSKIAKSKNYDLVISL--FHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMK 132

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
              +     DV T S+++  F        A+ +   M   G  P+ + ++++I+     G
Sbjct: 133 FGYEP----DVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIG 188

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
           LV  A+ LF+ M + G   ++   N L+     + ++  A RL R   +           
Sbjct: 189 LVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMR---------- 238

Query: 473 DGNTDRISNMEHKDKQSITNTP---NFVPNSHYSSFDK------RFSFKPTTTTYNILMK 523
               D + N+       IT T     FV    +S   K      R    P   TYN L+ 
Sbjct: 239 ----DIVPNV-------ITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLIN 287

Query: 524 ACCTDYYRV---KALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
             C  + RV   K +++ M T G  P+ +++  LI+    S  V+
Sbjct: 288 GLCM-HGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVD 331



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/246 (19%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           IVP   I F   +  F K+     A++ Y+   +    P+++   ++I+  G+C  G   
Sbjct: 240 IVPNV-ITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLIN--GLCMHGRVD 296

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           +++ + + + ++    ++  +N+L+N    +  +    ++++ M + G++ D  +YN ++
Sbjct: 297 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 356

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           +    AG    AQEI+  +         + ++ TYS ++         + AL + E+M  
Sbjct: 357 QGYFQAGRPDAAQEIFSRMDS-------RPNIRTYSILLYGLCMNWRVEKALVLFENMQK 409

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           + +  +  T++ +I+     G VE A  LF  +   G +P+      ++       Q+D+
Sbjct: 410 SEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDK 469

Query: 452 AFRLFR 457
           +  L+R
Sbjct: 470 SDLLYR 475



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 7/116 (6%)

Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           D R    T +I ++   MN         L +++NMQK  +  D+ +YNI++   C  GN 
Sbjct: 376 DSRPNIRTYSILLYGLCMNWRVEK---ALVLFENMQKSEIELDITTYNIVIHGMCKIGNV 432

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
             A +++   + L  KG LK DV +Y+T++  F   + W  +  +   M   G+ P
Sbjct: 433 EDAWDLF---RSLSCKG-LKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 106/259 (40%), Gaps = 20/259 (7%)

Query: 215 CIVPRADILFCNFV-----REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269
           C++ + + +   F+     R F  KR  ++     D   K + S  +    +I+D   + 
Sbjct: 20  CLLQKGNPVIVPFISRFWGRTFSTKRSSMNLEEEIDLFCKMIQSRPL---PSIVDFSKVL 76

Query: 270 GDYMKSR------AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVM 321
               KS+      +++  +    +  ++Y +N ++N      +F   L V   M K G  
Sbjct: 77  SKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYE 136

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            D+ + + L+   C  GN V   +    V  +E  G  + DV  Y+TI+           
Sbjct: 137 PDVVTVSSLINGFC-QGNRVF--DAIDLVSKMEEMG-FRPDVVIYNTIIDGSCKIGLVND 192

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A+++ + M   GV  + +T++SL+     +G    A  L  +M+     PN      ++ 
Sbjct: 193 AVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVID 252

Query: 442 ACVEACQFDRAFRLFRSWT 460
             V+  +F  A +L+   T
Sbjct: 253 VFVKEGKFSEAMKLYEEMT 271


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 143/330 (43%), Gaps = 39/330 (11%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SPN+ I  T+ID C   G+ M ++ ++  +    +  N + ++ LMN        +   +
Sbjct: 190 SPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQ 249

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +Y+NM++ G++ +  +YN L+   C  G    A +++ E++    KG+    V TY+ ++
Sbjct: 250 MYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMRE---KGI-ACGVMTYNILI 305

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 K +  A+K+   +   G++PN +T++ LIN   +   ++ A+ LF ++  +G  
Sbjct: 306 GGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLS 365

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDK 487
           P     N L+    +      A  L +      ++ ++V     Y    D  + + H +K
Sbjct: 366 PTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVT----YTILIDAFARLNHTEK 421

Query: 488 ----QSITNTPNFVPNSHYSSF--------------DKRFS------FKPTTTTYNILMK 523
                S+      VP+ +  S                K F        +P +  YN ++ 
Sbjct: 422 ACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIH 481

Query: 524 ACCTD--YYRVKALMNEMRTVGLSPNHISW 551
             C +   YR   L+NEM   G+ PN  S+
Sbjct: 482 GYCKEGSSYRALRLLNEMVQSGMVPNVASF 511



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 122/300 (40%), Gaps = 58/300 (19%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILL 331
           K+  I+ +L+S+ V L+ Y F  ++        F     +   +++ G+  ++  Y  L+
Sbjct: 142 KAWWIFNELKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLI 200

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
             CC  GN +LA+ ++ ++  L     L  +  TYS ++  F      +   ++ E+M  
Sbjct: 201 DGCCKDGNVMLAKNLFCKMNRLG----LVPNPHTYSVLMNGFFKQGLQREGFQMYENMKR 256

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           +G+ PN   ++ LI+   N G+V++A  +F EM + G        NIL+       +F  
Sbjct: 257 SGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGE 316

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           A +L                            HK                      +   
Sbjct: 317 AVKLV---------------------------HK--------------------VNKVGL 329

Query: 512 KPTTTTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            P   TYNIL+   C D  ++ +   L N++++ GLSP  +++  LI       N+ GAL
Sbjct: 330 SPNIVTYNILINGFC-DVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGAL 388



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 18/225 (8%)

Query: 214 ACIVPRADILFCNFVR--EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271
           AC V   +IL     R  +FG+   LV     +  +K  LS PN+     +I+  G C  
Sbjct: 295 ACGVMTYNILIGGLCRGKKFGEAVKLV-----HKVNKVGLS-PNIVTYNILIN--GFCDV 346

Query: 272 YMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
                A+  +  L+S  ++  +  +N+L+       +L   L++ K M++  +     +Y
Sbjct: 347 RKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTY 406

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            IL+ A     +T  A E++     L  K  L  DV+TYS ++         + A K+ +
Sbjct: 407 TILIDAFARLNHTEKACEMHS----LMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFK 462

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
            +    + PN++ ++++I+     G   +A+ L  EM+Q+G  PN
Sbjct: 463 SLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPN 507



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 100/212 (47%), Gaps = 14/212 (6%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  F   R + SA+R ++  K    SP +    T+I       +   +  + +++  + 
Sbjct: 339 LINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398

Query: 287 VTLNIYVFNSLMNVNA---HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
           +  +   +  L++  A   H  K   E++  M+K G++ D+ +Y++LL   C+ GN   A
Sbjct: 399 IAPSKVTYTILIDAFARLNHTEK-ACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEA 457

Query: 344 QEIY---GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
            +++   GE+ HL+   V+      Y+T++  +        AL++  +M+ +G+ PN  +
Sbjct: 458 SKLFKSLGEM-HLQPNSVI------YNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVAS 510

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           + S I         ++A  L  +M+ +G +P+
Sbjct: 511 FCSTIGLLCRDEKWKEAELLLGQMINSGLKPS 542



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 50/169 (29%)

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           T  + +++NA  ++   +QA+     M+  G  P S   N LL   + +  FD+A+ +F 
Sbjct: 89  TPLYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFN 148

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
                K++V L                                                +
Sbjct: 149 EL---KSKVVL---------------------------------------------DAYS 160

Query: 518 YNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           + I++K CC   Y VK   L+  +   GLSPN + +T LID C   GNV
Sbjct: 161 FGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNV 209


>gi|290985263|ref|XP_002675345.1| predicted protein [Naegleria gruberi]
 gi|284088941|gb|EFC42601.1| predicted protein [Naegleria gruberi]
          Length = 1231

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 135/313 (43%), Gaps = 49/313 (15%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           +I++    CG    +    E L+S+ +  NI V+N L+   +   +++  +EV   MQ  
Sbjct: 374 SIVNFYTKCGHPETAIKECEQLKSKGLMNNI-VWNCLIQAYIQNKEVRQAIEVITEMQDY 432

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  +  ++NILLKAC    ++ L +E  G++ H  +  VL       +  +  F     
Sbjct: 433 GIEPNSTTFNILLKAC---ADSKLFEE--GKLLHQASGQVLNNPTIELNNTIDQF----- 482

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
                   E M + G   N ITW+ LI A      V QA+ +  EM   G EPNS   NI
Sbjct: 483 --------EKMKTKGFEANVITWTCLIQAHVQNKEVRQAIEVITEMQDYGIEPNSTTFNI 534

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV- 497
           LL AC ++       +LF    L   Q             I N++    + +T+  NF  
Sbjct: 535 LLTACADS-------KLFEEGKLIHEQA------------IENVKDCSTELLTSIINFYT 575

Query: 498 ----PNSHYSSFD--KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHI 549
               P +     +  K          +N L++A   +    KA  ++ EM+  GL+P+  
Sbjct: 576 KCGHPETAIKECEKLKLKGLMNNVAVWNCLIQAHIQNNEVQKAIEIITEMQQFGLNPDST 635

Query: 550 SWTILIDACGGSG 562
           ++TI++ AC  S 
Sbjct: 636 TYTIILKACTDSN 648



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 97/195 (49%), Gaps = 8/195 (4%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKL 318
           +II+    CG    +    E L+ + +  N+ V+N L+  ++  ++++  +E+   MQ+ 
Sbjct: 569 SIINFYTKCGHPETAIKECEKLKLKGLMNNVAVWNCLIQAHIQNNEVQKAIEIITEMQQF 628

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAK 377
           G+  D  +Y I+LKAC    ++ L +E  G+  H +A + V        ++I+  +    
Sbjct: 629 GLNPDSTTYTIILKACT---DSNLFEE--GKFIHEQAIENVKDCSTELLTSIISFYTKCG 683

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
             ++++   E + S G+  N   W+ LI A      V++++ +  EM   G EPNS   N
Sbjct: 684 HPEVSIGECEKLQSKGLMNNIAVWNCLIQAHIQNNEVQKSIKIITEMQDYGIEPNSTTFN 743

Query: 438 ILLQACVEACQFDRA 452
           ILL AC ++  F+  
Sbjct: 744 ILLTACADSKLFEEG 758



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 167/382 (43%), Gaps = 63/382 (16%)

Query: 192 DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK-H 250
           D+  R + + +N    ++   YA  +P         ++    K+++   +  Y   KK +
Sbjct: 17  DDLERALAIVLNMKGKDIEPNYAIYIP--------LLKAATVKKNIQVGMTLYQLVKKSN 68

Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR--SQNVTLNIYVFNSLMN--VNAHDLK 306
           L+SP +    TII          K   + E++    Q   + I  +NSL+   +  +++K
Sbjct: 69  LASPQL--STTII---SFALKLRKPELVIEEIELVKQQKWMTIITWNSLIQAYIQENNIK 123

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK--LDVF 364
             ++V   M+  G+  D A++NIL+ AC    NT L  E  G++ H      LK    V 
Sbjct: 124 KAIDVIHEMKDNGICPDSATFNILITAC---ANTKLFAE--GKLIHKITTNTLKDNCSVE 178

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
             ++I+  +      ++A+   E M S G+  N ++++ L+ A      +++A+    EM
Sbjct: 179 LLTSIINFYTKCGHPEIAINECEKMKSKGLM-NVVSFTCLVEAYIQINEIQKAIDTVTEM 237

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
            Q    PN+   +ILL AC +        +L++   L                +I+N   
Sbjct: 238 KQFKVTPNATTFSILLTACAK-------LKLYKEGIL--------------IHKIANNTL 276

Query: 485 KDKQS---ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEM 539
           +D  S   +T+  NF     Y+ + K++        +N L++A   +    +A  ++ EM
Sbjct: 277 RDNSSLKLLTSIINF-----YTKYIKKYY------GWNCLIQAYIQNKEVRQAIEIITEM 325

Query: 540 RTVGLSPNHISWTILIDACGGS 561
           +  G+ PN  ++ IL+ AC  S
Sbjct: 326 QDYGVEPNSTTFNILLTACADS 347



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 66/345 (19%), Positives = 138/345 (40%), Gaps = 66/345 (19%)

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC-- 335
           E ++S+ + +N+  F  L+   +  ++++  ++    M++  V  +  +++ILL AC   
Sbjct: 201 EKMKSKGL-MNVVSFTCLVEAYIQINEIQKAIDTVTEMKQFKVTPNATTFSILLTACAKL 259

Query: 336 -LAGNTVLAQEIYGEVKHLEAKGVLKL-------------DVFTYSTIVKVFADAKWWQM 381
            L    +L  +I      L     LKL               + ++ +++ +   K  + 
Sbjct: 260 KLYKEGILIHKIANNT--LRDNSSLKLLTSIINFYTKYIKKYYGWNCLIQAYIQNKEVRQ 317

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ--AMHLFE----------------- 422
           A+++  +M   GV PN+ T++ L+ ACA++ L E+  A+H                    
Sbjct: 318 AIEIITEMQDYGVEPNSTTFNILLTACADSKLFEEGKAIHKLATGTLKDYSSELLASIVN 377

Query: 423 ---------------EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-------T 460
                          E L++    N+   N L+QA ++  +  +A  +            
Sbjct: 378 FYTKCGHPETAIKECEQLKSKGLMNNIVWNCLIQAYIQNKEVRQAIEVITEMQDYGIEPN 437

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS--FKPTTTTY 518
            +   + L    D        + H+    + N P    N+    F+K  +  F+    T+
Sbjct: 438 STTFNILLKACADSKLFEEGKLLHQASGQVLNNPTIELNNTIDQFEKMKTKGFEANVITW 497

Query: 519 NILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGS 561
             L++A   +    +A+  + EM+  G+ PN  ++ IL+ AC  S
Sbjct: 498 TCLIQAHVQNKEVRQAIEVITEMQDYGIEPNSTTFNILLTACADS 542



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 10/158 (6%)

Query: 289 LNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           +N++++   +N  +   DL+  L +  NM+   +  + A Y  LLKA  +  N  +   +
Sbjct: 1   MNVFLYTHFINNCIWNDDLERALAIVLNMKGKDIEPNYAIYIPLLKAATVKKNIQVGMTL 60

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE-DMLSAGVTPNTITWSSLI 405
           Y  VK         L     ST +  FA  K  +  L ++E +++        ITW+SLI
Sbjct: 61  YQLVKKS------NLASPQLSTTIISFA-LKLRKPELVIEEIELVKQQKWMTIITWNSLI 113

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
            A      +++A+ +  EM   G  P+S   NIL+ AC
Sbjct: 114 QAYIQENNIKKAIDVIHEMKDNGICPDSATFNILITAC 151



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 13/193 (6%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE---VYKNMQKLGVMADMASY 327
           + +KS+ +  ++   N  +  ++ N+    N   +++ L    V  N  K  +  D  +Y
Sbjct: 798 EQLKSKGLMNNVAIWNCLIQAHIQNTTNTQNPSTIEYGLNKAMVVFNEMKEHIEPDKITY 857

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF--TYSTIVKVFADAKWWQMALKV 385
            ILL  C   G  V  +     +  L+ KG   +DV     S ++  ++   +   A ++
Sbjct: 858 LILLAGC---GEYVARKMGLDIIDELKLKG---MDVHEEIVSVMIYFYSRIAYQSTAQQL 911

Query: 386 KEDML--SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
            E ++  SA    + IT++++++  A  G   QAM+LF EM+    E N Q   I+L   
Sbjct: 912 FEKLVEESAQKRLSIITYNNMLSCYAQHGKGTQAMNLFNEMVDKNVEMNEQTFTIMLNTF 971

Query: 444 VEACQFDRAFRLF 456
                 D A +L+
Sbjct: 972 SHCGMIDEANQLY 984


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 147/351 (41%), Gaps = 67/351 (19%)

Query: 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLR 283
           N + + GK RD +  LR  +   K    PN+ +   ++D  G+C + + + A  +  ++ 
Sbjct: 169 NGLCKMGKTRDAIELLRKME---KGGVRPNLIMYNMVVD--GLCKEGLVTEACGLCSEMV 223

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNM-QKLGVMADMASYNILLKACCLAGNT 340
            + + ++++ +NSL++    A   +  + +   M  K  V  D+ ++NIL+ A C  G  
Sbjct: 224 GKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMV 283

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A+ ++G    L  K  L+ DV + + ++  +        A +V + M+  G  PN I+
Sbjct: 284 AEARNVFG----LMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVIS 339

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +S+LIN      +V++A+ L  EM Q    P++   N LL          ++ R+   W 
Sbjct: 340 YSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDG------LSKSGRVLYEWD 393

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
           L +   A G+                                          P   TYN+
Sbjct: 394 LVEAMRASGQ-----------------------------------------APDLITYNV 412

Query: 521 L----MKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           L    +K  C D  +  AL   +   G+SPN  ++ ILID     G ++ A
Sbjct: 413 LLDDYLKRECLD--KALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAA 461



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 7/177 (3%)

Query: 287 VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           VTL+I++ NSL ++    L F+  V   + K G   D  +   L+K  CL G T  A  +
Sbjct: 92  VTLSIFI-NSLTHLGQMGLAFS--VMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNL 148

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
           Y    H  +KG    D   Y T++         + A+++   M   GV PN I ++ +++
Sbjct: 149 Y---DHAVSKG-FSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVD 204

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
                GLV +A  L  EM+  G   +    N L+     A QF  A RL     + +
Sbjct: 205 GLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKE 261



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/191 (19%), Positives = 91/191 (47%), Gaps = 6/191 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++  C  +++   + G   +++ +++ +  +    N+  +++L+N       +   L +
Sbjct: 300 PDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRL 359

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M +  ++ D  +YN LL     +G  +   ++   V+ + A G    D+ TY+ ++ 
Sbjct: 360 LTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDL---VEAMRASGQAP-DLITYNVLLD 415

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +   +    AL + + ++  G++PN  T++ LI+     G ++ A  +F+ +   GC P
Sbjct: 416 DYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRP 475

Query: 432 NSQCCNILLQA 442
           N +  NI++  
Sbjct: 476 NIRTYNIMING 486



 Score = 38.9 bits (89), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 105/234 (44%), Gaps = 19/234 (8%)

Query: 221 DILFCNFVREFGKKRDLVS-ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI- 278
           D++ CN +      R  +S A   +D   +    PN+    T+I+  G C   M   A+ 
Sbjct: 301 DVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLIN--GYCKVKMVDEALR 358

Query: 279 -YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL---- 331
              ++  +N+  +   +N L++    +  + +  ++ + M+  G   D+ +YN+LL    
Sbjct: 359 LLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYL 418

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           K  CL     L Q       H+   G+   ++ TY+ ++         + A ++ + +  
Sbjct: 419 KRECLDKALALFQ-------HIVDTGI-SPNIRTYNILIDGLCKGGRMKAAKEIFQLLSV 470

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            G  PN  T++ +IN     GL+++A  L  EM+  G  PN+   + L++A +E
Sbjct: 471 KGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLVRALLE 524


>gi|9755888|emb|CAC01941.1| RSP67.2 [Raphanus sativus]
          Length = 700

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 116/240 (48%), Gaps = 9/240 (3%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           ++     +  +G+  ++  AL  YD ++      +     T+I + G  G+Y     IYE
Sbjct: 243 NVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYE 302

Query: 281 DLRSQNVTLNIYVFNSL---MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           +++S  V  N+ ++N L   M       + T+ ++K++   G   + ++Y  L++A   A
Sbjct: 303 EMKSLGVKPNLVIYNRLLDSMGKAKRPWQATM-IHKDLISNGFEPNWSTYAALIRAYGRA 361

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TP 396
                A  IY   + ++ KG ++L V  Y+T++ + AD  +   A ++ +DM S+G   P
Sbjct: 362 RYGEDALVIY---RQMKGKG-MELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEP 417

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           ++ T+SSLI   +  G V +A     EM +AG EP       L+Q   +A Q D   R F
Sbjct: 418 DSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTF 477



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   +R +G   +    L  Y+  K     PN+ I   ++D  G      ++  I++D
Sbjct: 279 VTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKD 338

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           L S     N   + +L+     A   +  L +Y+ M+  G+   +  YN LL  C   G 
Sbjct: 339 LISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADIGY 398

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A EI+ ++K   + G  + D +T+S+++ V++       A     +M  AG  P   
Sbjct: 399 VDEAFEIFQDMK---SSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLF 455

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
             +SLI     A  V+  +  FE++L+ G EP+ + C  LL
Sbjct: 456 VLTSLIQCYGKAKQVDDVVRTFEQVLELGIEPDDRFCGCLL 496



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 107/221 (48%), Gaps = 10/221 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           P+      +ID  G  G+   + ++Y+  R++   ++   F++L+ +  +   +   L +
Sbjct: 241 PDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNI 300

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y+ M+ LGV  ++  YN LL +   A     A  I+   K L + G  + +  TY+ +++
Sbjct: 301 YEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIH---KDLISNG-FEPNWSTYAALIR 356

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CE 430
            +  A++ + AL +   M   G+    + +++L++ CA+ G V++A  +F++M  +G CE
Sbjct: 357 AYGRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSGTCE 416

Query: 431 PNSQCCNILLQA---CVEACQFDRAFRLFRSWTLSKTQVAL 468
           P+S   + L+     C    + + A R  R      T   L
Sbjct: 417 PDSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVL 457



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 142/355 (40%), Gaps = 54/355 (15%)

Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           R  IL+   ++ F K +DL  + + +D   +    P+     T+I     CG  + +RA+
Sbjct: 171 REVILYNVTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCG--LPNRAV 228

Query: 279 --YEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
             +E + S  +  +     ++++    A +++  L +Y   +      D  +++ L++  
Sbjct: 229 EWFEKMPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIY 288

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
             AGN      IY E+K L   GV K ++  Y+ ++     AK    A  + +D++S G 
Sbjct: 289 GYAGNYDGCLNIYEEMKSL---GV-KPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGF 344

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PN  T+++LI A   A   E A+ ++ +M   G E      N LL  C +    D AF 
Sbjct: 345 EPNWSTYAALIRAYGRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADIGYVDEAFE 404

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           +F                               Q + ++    P+S        ++F   
Sbjct: 405 IF-------------------------------QDMKSSGTCEPDS--------WTFSSL 425

Query: 515 TTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            T Y     +CC      +A + EMR  G  P     T LI   G +  V+  ++
Sbjct: 426 ITVY-----SCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVR 475


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 144/330 (43%), Gaps = 48/330 (14%)

Query: 245 DASKKHLS----SPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLM 298
           DA+++ ++     P+ Y   T+I   G+CG      A  + +D+  +    ++  +  L+
Sbjct: 141 DAARRLVADMPMEPDSYTYNTLIR--GLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILL 198

Query: 299 NVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                    K  +++   M+  G   D+ +YN+++   C  G    A E    +K L + 
Sbjct: 199 EATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEF---LKSLPSH 255

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  + +  +Y+ ++K    A+ W+ A K+  +M   G  PN +T++ LI+     GLVE 
Sbjct: 256 GC-EPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEP 314

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR------------SWTLSKT 464
           AM + +++ + GC PNS   N +L A  +  + DRA                 S+    T
Sbjct: 315 AMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLT 374

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
            +  G + D   + +  +  KDK     TP  +      S++         T  + L KA
Sbjct: 375 ALCRGGEVDAAVELLHQL--KDKGC---TPVLI------SYN---------TVIDGLTKA 414

Query: 525 CCTDYYRVKALMNEMRTVGLSPNHISWTIL 554
             T       L+NEM T GL P+ I+++ +
Sbjct: 415 GKTK--EALELLNEMVTKGLQPDIITYSTI 442



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 100/249 (40%), Gaps = 56/249 (22%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+ +YN ++   C+ G    A+ +  ++        ++ D +TY+T+++          A
Sbjct: 123 DVMAYNAMVAGYCVTGQLDAARRLVADMP-------MEPDSYTYNTLIRGLCGRGRTGNA 175

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           L V +DML  G  P+ +T++ L+ A       +QAM L +EM   GC P+    N+++  
Sbjct: 176 LVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNG 235

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
             +  + D A    +S                                         SH 
Sbjct: 236 ICQEGRVDDAIEFLKSLP---------------------------------------SH- 255

Query: 503 SSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560
                    +P T +YNI++K  CT   +   + LM EM   G  PN +++ +LI     
Sbjct: 256 -------GCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCR 308

Query: 561 SGNVEGALQ 569
            G VE A++
Sbjct: 309 RGLVEPAME 317



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 4/142 (2%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M   G   D+ SYN LL A C  G    A E+  ++K      VL     +Y+T++    
Sbjct: 357 MVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVL----ISYNTVIDGLT 412

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            A   + AL++  +M++ G+ P+ IT+S++ +       +E+A+  F ++   G  PN+ 
Sbjct: 413 KAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTV 472

Query: 435 CCNILLQACVEACQFDRAFRLF 456
             N +L    +  +   A  LF
Sbjct: 473 LYNAILLGLCKRRETHNAIDLF 494



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 11/222 (4%)

Query: 226 NFVREFGKKRDLV-SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDL 282
           N +  F  +R LV  A+   D   K+  +PN      I+     C      RA+   E +
Sbjct: 300 NMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILH--AFCKQKKMDRAMAFVELM 357

Query: 283 RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            S+    +I  +N+L+       ++   +E+   ++  G    + SYN ++     AG T
Sbjct: 358 VSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKT 417

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A E+  E   +  KG L+ D+ TYSTI          + A++    +   G+ PNT+ 
Sbjct: 418 KEALELLNE---MVTKG-LQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVL 473

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +++++           A+ LF  M+  GC PN     IL++ 
Sbjct: 474 YNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEG 515


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 171/412 (41%), Gaps = 53/412 (12%)

Query: 197 IVQLCVNKPDVNLAIRYACIVPRADILFC----------NFVREFGKKRDLVSALRAYDA 246
           ++  CV + +V  A+R      + D++ C          + ++ +  + +L SAL   + 
Sbjct: 234 VITACVKEGNVAEALRL-----KDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNE 288

Query: 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHD 304
             +    PN      +ID C   G+  K+   Y +++++ +  ++Y  NS++   +    
Sbjct: 289 ISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQS 348

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            +    ++ +  + G +A++ ++N LL   C  G    A  ++ EV    AKG+   +V 
Sbjct: 349 WQNAFTMFNDALESG-LANVFTFNTLLSWLCKEGKMNEACNLWDEVI---AKGI-SPNVV 403

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+ I+           A KV ++ML  G TPN +T++ L++     G +E A  +F  M
Sbjct: 404 SYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRM 463

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--------LSKTQVALGEDYDGNT 476
             A   P      I+++   +A +      LF  +         +    +  G   +GN 
Sbjct: 464 KDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNI 523

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFD------------------KRFSFKPTTTTY 518
           +  SN+ +++   +  TP+ V  ++ S  D                  KR   K     Y
Sbjct: 524 NLASNV-YREMCEVGITPSTV--TYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAY 580

Query: 519 NILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             L+   C   D      L+NE+R  GLSPN   +  +I       NVE A+
Sbjct: 581 GTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAI 632



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 148/358 (41%), Gaps = 76/358 (21%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           ++I  C   G+  ++  + +D+ +   ++N+ V  SLM       +L+  L +   + + 
Sbjct: 233 SVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISES 292

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G++ +  +Y++L+  CC  GN   A E Y E+K    KG+ +  V++ ++I++ +   + 
Sbjct: 293 GLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMK---TKGI-RSSVYSLNSILEGYLKCQS 348

Query: 379 WQMALKVKEDMLSAG----------------------------------VTPNTITWSSL 404
           WQ A  +  D L +G                                  ++PN ++++++
Sbjct: 349 WQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNI 408

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWTL 461
           I        +  A  +++EML  G  PN+    IL+    +    + AF +F   +   +
Sbjct: 409 ILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANI 468

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS--FKPTTTTYN 519
             T   LG    G      + E +D                  F+K  S  F PT   YN
Sbjct: 469 LPTDTTLGIIIKGLCKAGRSFEGRD-----------------LFNKFVSQGFVPTCMPYN 511

Query: 520 ILMKA--------CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            ++            ++ YR      EM  VG++P+ +++T LID      N++ AL+
Sbjct: 512 TIIDGFIKEGNINLASNVYR------EMCEVGITPSTVTYTSLIDGFCKGNNIDLALK 563



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 126/256 (49%), Gaps = 17/256 (6%)

Query: 197 IVQLCVNKPDVNLA---IRYAC---IVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250
           I+   + + ++NLA    R  C   I P + + + + +  F K  ++  AL+  +  K+ 
Sbjct: 513 IIDGFIKEGNINLASNVYREMCEVGITP-STVTYTSLIDGFCKGNNIDLALKLLNDMKRK 571

Query: 251 LSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLK 306
               ++    T+ID  G C   D   +  +  +LR   ++ N +++NS++    N ++++
Sbjct: 572 GLKMDIKAYGTLID--GFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVE 629

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             +++YK M   G+  D+ +Y  L+     +G  + A +I+ E   + +KG+L  D   +
Sbjct: 630 EAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTE---MLSKGILP-DDRAH 685

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + ++    +   ++ A K+ EDM    + P+ + +++LI      G +++A  L +EML 
Sbjct: 686 TVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLD 745

Query: 427 AGCEPNSQCCNILLQA 442
            G  P++   +IL+  
Sbjct: 746 RGLVPDNITYDILVNG 761



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 156/356 (43%), Gaps = 30/356 (8%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMK 274
            P A + F   +  + KK D+ +A   +   K     P       II   G+C  G   +
Sbjct: 434 TPNA-VTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIK--GLCKAGRSFE 490

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
            R ++    SQ        +N++++  +   ++     VY+ M ++G+     +Y  L+ 
Sbjct: 491 GRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLID 550

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C   N  LA ++  ++K    KG LK+D+  Y T++  F   +  + A ++  ++  A
Sbjct: 551 GFCKGNNIDLALKLLNDMKR---KG-LKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGA 606

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G++PN   ++S+I    N   VE+A+ L+++M+  G   + +    L+   +      ++
Sbjct: 607 GLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLL------KS 660

Query: 453 FRLFRSWTLSKTQVALG--EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
            RL  +  +    ++ G   D   +T  I+ + +K +    N    + + +        +
Sbjct: 661 GRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQ--FENARKILEDMNGK------N 712

Query: 511 FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA-CGGSGN 563
             P+   YN L+     +    +A  L +EM   GL P++I++ IL++    G GN
Sbjct: 713 MIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKGDGN 768



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 115/266 (43%), Gaps = 23/266 (8%)

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
           + L + + M+  G +    ++  ++ AC   GN   A  +  ++ +        +++   
Sbjct: 211 YALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKS----MNLAVA 266

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           ++++K +      + AL +  ++  +G+ PN +T+S LI+ C   G +E+A   + EM  
Sbjct: 267 TSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKT 326

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G   +    N +L+  ++   +  AF +F        +  L   +  NT  +S +  + 
Sbjct: 327 KGIRSSVYSLNSILEGYLKCQSWQNAFTMFN----DALESGLANVFTFNT-LLSWLCKEG 381

Query: 487 KQSITNTPNFVPNSHYSSFDKRFS--FKPTTTTY-NILMKACCTDYYRVK-ALMNEMRTV 542
           K           N   + +D+  +    P   +Y NI++  C  D       +  EM   
Sbjct: 382 KM----------NEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDN 431

Query: 543 GLSPNHISWTILIDACGGSGNVEGAL 568
           G +PN +++TIL+D     G++E A 
Sbjct: 432 GFTPNAVTFTILMDGYFKKGDIENAF 457


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 145/328 (44%), Gaps = 25/328 (7%)

Query: 248 KKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAH 303
           KK+    ++Y   T+I   G+CG  +   +  +Y+++    V+ ++ V+N+++N  + A 
Sbjct: 282 KKNERGQDLYTYSTLIH--GLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAG 339

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
            ++  LE++K M+K G    + SYNIL++   L  N  + + I   +  L  +     D 
Sbjct: 340 RIEECLELWKVMEKEGCRT-VVSYNILIRG--LFENAKVDEAI--SIWELLPEKDCCADS 394

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY  +V       +   AL + E+  +     +T  +SS+IN     G +++   + ++
Sbjct: 395 MTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQ 454

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M + GC+PN   CN ++   V A + + A R F +  +SK        Y+   + +S  E
Sbjct: 455 MTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGN-MVSKGCFPTVVTYNTLINGLSKAE 513

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV- 542
                  +     V    +        +KP   TY++LM   C       AL    + + 
Sbjct: 514 R-----FSEAYALVKEMLHK------GWKPNMITYSLLMNGLCQGKKLDMALNLWCQALE 562

Query: 543 -GLSPNHISWTILIDACGGSGNVEGALQ 569
            G  P+     I+I     SG VE ALQ
Sbjct: 563 KGFKPDVKMHNIIIHGLCSSGKVEDALQ 590



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 112/225 (49%), Gaps = 15/225 (6%)

Query: 242 RAYDASKKHLS-------SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
           + +D +K+ L+       SP+++   T+I+     G    +  +++++  + VT ++  +
Sbjct: 163 KQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACY 222

Query: 295 NSLMN--VNAHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           N L++      D+    E+++ + K   V  ++ SYN+++   C  G    + EI+  +K
Sbjct: 223 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 282

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
             E       D++TYST++     +     A +V ++M   GV+P+ + +++++N    A
Sbjct: 283 KNERGQ----DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRA 338

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           G +E+ + L++ M + GC       NIL++   E  + D A  ++
Sbjct: 339 GRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIW 382



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 169/402 (42%), Gaps = 35/402 (8%)

Query: 74  YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV 133
           Y  M + L K G+ +E   I   +  +E    +   + +   +  G+  S   G +D   
Sbjct: 258 YNVMINGLCKCGKFDESFEIWHRMKKNE----RGQDLYTYSTLIHGLCGS---GNLDGAT 310

Query: 134 GVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDE 193
            V K++ E GV+P    D   +  + N     L +G +E  + L +V+E  +   + +  
Sbjct: 311 RVYKEMAENGVSP----DVVVYNTMLN---GYLRAGRIEECLELWKVME--KEGCRTVVS 361

Query: 194 EFRIVQLCVNKPDVNLAIRYACIVPRAD-----ILFCNFVREFGKKRDLVSALRAYDASK 248
              +++       V+ AI    ++P  D     + +   V    K   L  AL   + ++
Sbjct: 362 YNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAE 421

Query: 249 KHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHD 304
                 + +   ++I+  G+C  G   +   + + +       N +V N+++N  V A  
Sbjct: 422 NGRGDLDTFAYSSMIN--GLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASK 479

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           L+  L  + NM   G    + +YN L+     A       E Y  VK +  KG  K ++ 
Sbjct: 480 LEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERF---SEAYALVKEMLHKG-WKPNMI 535

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TYS ++      K   MAL +    L  G  P+    + +I+   ++G VE A+ L+ EM
Sbjct: 536 TYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEM 595

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLF----RSWTLS 462
            Q  C PN    N L++   +   F+RA +++    +SW+ S
Sbjct: 596 KQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQSWSSS 637



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 308 TLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
            L++++ M ++ G    + SYN LL A   +     A+  +    + E  G L  ++ TY
Sbjct: 97  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFF---LYFETMG-LSPNLQTY 152

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + ++K+    K +  A ++   M   G +P+  ++ +LIN+ A  G +  A+ LF+EM +
Sbjct: 153 NILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPE 212

Query: 427 AGCEPNSQCCNILLQA 442
            G  P+  C NIL+  
Sbjct: 213 RGVTPDVACYNILIDG 228



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 97/207 (46%), Gaps = 5/207 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
           SPN+     +I +      + K++ +   +  Q  + +++ + +L+N  A +  +   L+
Sbjct: 146 SPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALK 205

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M + GV  D+A YNIL+      G+ + A EI+  +  L+   V   ++ +Y+ ++
Sbjct: 206 LFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL--LKGPSVYP-NIPSYNVMI 262

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                   +  + ++   M       +  T+S+LI+    +G ++ A  +++EM + G  
Sbjct: 263 NGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVS 322

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFR 457
           P+    N +L   + A + +    L++
Sbjct: 323 PDVVVYNTMLNGYLRAGRIEECLELWK 349



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 72/203 (35%), Gaps = 50/203 (24%)

Query: 368 TIVKVFADAKWWQMALKVKEDMLSA-GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           T++K +A       AL + + M    G  P   +++SL+NA   +   ++A   F     
Sbjct: 83  TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFET 142

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G  PN Q  NIL++      QFD+A  L  +W   +                       
Sbjct: 143 MGLSPNLQTYNILIKISCRKKQFDKAKELL-NWMWEQ----------------------- 178

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGL 544
                                   F P   +Y  L+ +   + Y   A  L +EM   G+
Sbjct: 179 -----------------------GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGV 215

Query: 545 SPNHISWTILIDACGGSGNVEGA 567
           +P+   + ILID     G++  A
Sbjct: 216 TPDVACYNILIDGFFKKGDILNA 238


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 155/353 (43%), Gaps = 44/353 (12%)

Query: 204 KPDV---NLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICR 260
           KPD+   N  I   C   R +  F +F +E  +K      +R           PN+    
Sbjct: 187 KPDIVAYNAIIDSLCKTKRVNDAF-DFFKEIERK-----GIR-----------PNVVTYT 229

Query: 261 TIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQ 316
            +++  G+C     S A  +  D+  + +T N+  +++L++    + K     E+++ M 
Sbjct: 230 ALVN--GLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 287

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           ++ +  D+ +Y+ L+   CL      A +++     + +KG L  DV +Y+T++  F  A
Sbjct: 288 RMSIDPDIVTYSSLINGLCLHDRIDEANQMF---DLMVSKGCLA-DVVSYNTLINGFCKA 343

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
           K  +  +K+  +M   G+  NT+T+++LI     AG V++A   F +M   G  P+    
Sbjct: 344 KRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTY 403

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           NILL    +  + ++A  +F    + K ++ L  D    T  I  M    K         
Sbjct: 404 NILLGGLCDNGELEKALVIFED--MQKREMDL--DIVTYTTVIRGMCKTGKVE------- 452

Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPN 547
              S + S   +   KP   TY  +M   CT    + V+AL  +M+  GL  N
Sbjct: 453 EAWSLFCSLSLK-GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 504



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 18/256 (7%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M ++G   D+ +YN ++ + C    T    + +   K +E KG+ + +V TY+ +V    
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLC---KTKRVNDAFDFFKEIERKGI-RPNVVTYTALVNGLC 236

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           ++  W  A ++  DM+   +TPN IT+S+L++A    G V +A  LFEEM++   +P+  
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             + L+      C  DR     + + L  ++  L +    NT  + N   K K+      
Sbjct: 297 TYSSLING---LCLHDRIDEANQMFDLMVSKGCLADVVSYNT--LINGFCKAKRVEDGMK 351

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWT 552
            F   S              T TYN L++      D  + +   ++M   G+SP+  ++ 
Sbjct: 352 LFREMSQR-------GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404

Query: 553 ILIDACGGSGNVEGAL 568
           IL+     +G +E AL
Sbjct: 405 ILLGGLCDNGELEKAL 420



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 85/216 (39%), Gaps = 50/216 (23%)

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K +E  G+ + D++T++ ++  F       +AL +   ML  G  P+ +T  SL+N    
Sbjct: 109 KKMEVLGI-RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 167

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
              V  A+ L ++M++ G +P+    N ++ +  +  + + AF  F+             
Sbjct: 168 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI----------- 216

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TD 528
                                               +R   +P   TY  L+   C  + 
Sbjct: 217 ------------------------------------ERKGIRPNVVTYTALVNGLCNSSR 240

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           +     L+++M    ++PN I+++ L+DA   +G V
Sbjct: 241 WSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKV 276


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 106/262 (40%), Gaps = 53/262 (20%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y+ + + G  A +  +NIL+   C  G+  LAQ ++  +     K  L+  V +Y+T++ 
Sbjct: 124 YEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAI----TKWGLRPSVVSYNTLMN 179

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +          K+K  M ++GV P+  T+S LIN       ++ A  LFEEML  G  P
Sbjct: 180 GYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVP 239

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           N      L+    +  + D A  ++                              KQ ++
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEVY------------------------------KQMLS 269

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHI 549
                             S  P   TYN L+   C      +A  LM+EM   GL P+ I
Sbjct: 270 Q-----------------SLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKI 312

Query: 550 SWTILIDACGGSGNVEGALQCR 571
           ++T LID C   G+++ A + R
Sbjct: 313 TYTTLIDGCCKEGDLDTAFEHR 334



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 24/287 (8%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++++++ +    +  ++  +N+LMN  +   DL    ++   M   GV  D+ +Y
Sbjct: 150 GDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTY 209

Query: 328 NILLKACCLAGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           ++L+   C       A E++ E  VK L   GV      T++T++          +A++V
Sbjct: 210 SVLINGLCKESKMDDANELFEEMLVKGLVPNGV------TFTTLIDGHCKNGRVDLAMEV 263

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + MLS  + P+ IT+++LI      G + QA  L +EM   G +P+      L+  C +
Sbjct: 264 YKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCK 323

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
               D AF   +       ++    D    T  IS +  + +         V        
Sbjct: 324 EGDLDTAFEHRKRMIQENIRL----DDVAYTALISGLCQEGRS--------VDAEKMMRE 371

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHIS 550
              F  KP T TY +++   C   D ++   L+ EM+  G +P+ ++
Sbjct: 372 MLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 418



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 148/357 (41%), Gaps = 33/357 (9%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DI +F   +  + +   L  A+  Y  +++H        C+ +++       +    A
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAVECYRLTREHKFWVPFDTCKKMLEHLVKLKYFNLVWA 122

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YE++       ++Y FN LM+      D++    V+  + K G+   + SYN L+    
Sbjct: 123 FYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYI 182

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ E+ML  G+ 
Sbjct: 183 RLGDL---NEGFKLKSAMHASGV-QPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLV 238

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++LI+     G V+ AM ++++ML     P+    N L+    +    ++A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDL 298

Query: 456 FRSWT---LSKTQVALGEDYDG---NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
               +   L   ++      DG     D  +  EH+ +    N                 
Sbjct: 299 MDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQEN----------------- 341

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
             +     Y  L+   C +   V A  +M EM + GL P+  ++T++I+     G+V
Sbjct: 342 -IRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDV 397



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 99/214 (46%), Gaps = 6/214 (2%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           C  P +   F   +  F K+ D+  A   +DA  K    P++    T+++     GD  +
Sbjct: 130 CGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNE 189

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
              +   + +  V  ++Y ++ L+N    + K     E+++ M   G++ +  ++  L+ 
Sbjct: 190 GFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLID 249

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G   LA E+Y   K + ++ +L  D+ TY+T++           A  + ++M   
Sbjct: 250 GHCKNGRVDLAMEVY---KQMLSQSLLP-DLITYNTLIYGLCKKGALNQAHDLMDEMSMK 305

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           G+ P+ IT+++LI+ C   G ++ A    + M+Q
Sbjct: 306 GLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQ 339



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 22/189 (11%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--------NAH 303
           PN     T+ID  G C  G    +  +Y+ + SQ++  ++  +N+L+           AH
Sbjct: 239 PNGVTFTTLID--GHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAH 296

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           DL         M   G+  D  +Y  L+  CC  G+   A E     K +  + + +LD 
Sbjct: 297 DL------MDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFE---HRKRMIQENI-RLDD 346

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
             Y+ ++           A K+  +MLS G+ P+T T++ +IN     G V +   L +E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKE 406

Query: 424 MLQAGCEPN 432
           M + G  P+
Sbjct: 407 MQRDGHAPS 415


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 152/359 (42%), Gaps = 26/359 (7%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           +VP  ++ F   +  + +  ++  A + YD       +P+ Y  R++I V  +    MK+
Sbjct: 506 VVPN-EVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKA 564

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           +   +DL +  V LN +   +LM        L  T  ++  M+  GV  D+ S+ +++ A
Sbjct: 565 KEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYA 624

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
                +    ++I    + ++ KGV   +VF ++ ++ V +  +    AL   + M++ G
Sbjct: 625 ALKLHD---GEKISVLFREMKEKGVKPDNVF-HTCMIDVHSKEENIVQALNCWDKMIADG 680

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
            +PN +T++ LIN    +G +  A  L EEML     PNS   N  L       + ++A 
Sbjct: 681 CSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAK 740

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHK--DKQSITNTPNFVPNSHYSSFDKRFSF 511
            L            + E    NT   + +         I    + + N+  S       F
Sbjct: 741 VL---------HATILEGCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTES------GF 785

Query: 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            P   +Y+ ++   C   D  +   L NEM   GL P+ +++ ILI  C   G  +  L
Sbjct: 786 FPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILIRWCNIHGEFDKGL 844



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 129/301 (42%), Gaps = 24/301 (7%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +R +++++      L+ YV+ + +       +L     +   M+  GV      YN+L+ 
Sbjct: 179 ARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMY 238

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C     + A E+      +  +G++  D  TY T+V  F   +  +MAL++ +DMLS 
Sbjct: 239 GLCRNNRVLEAVEVKNS---MVERGIVA-DEVTYRTLVYGFCRTEELEMALEMTDDMLSL 294

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
              P+  + S +++     G +++A  L   + + G  PN   CN L+    +  +F  A
Sbjct: 295 HFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREA 354

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFS 510
            RLFR               + N    + + H      +     + +     FD  +   
Sbjct: 355 ERLFRGMA--------NRGLEPNEVTYAILIH------SLCKRGMMDDALCMFDRMREKG 400

Query: 511 FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            + T   YN L+   C   ++++ + L+NEM   GL+P+  S++ LI      G++  A+
Sbjct: 401 IRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAM 460

Query: 569 Q 569
           +
Sbjct: 461 E 461



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 25/244 (10%)

Query: 204 KPDVNLAIRYAC------IVPRADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNM 256
           +  ++ A R AC      +VP  ++  CN  + +  K R    A R +         PN 
Sbjct: 313 RGHIDKAFRLACHLGELGMVP--NLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNE 370

Query: 257 YICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNV-----NAHDLKFTL 309
                +I    +C   M   A+  ++ +R + + + +Y +NSL+N      N H  +  L
Sbjct: 371 VTYAILIH--SLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLL 428

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
                M + G+    ASY+ L+   C  G+   A E++ E+    A+  +  +V+T++T+
Sbjct: 429 ---NEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREM----ARNGVSGNVYTFTTL 481

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +  F        A ++ + M+ + V PN +T++ +I      G V +A  L+++M+  G 
Sbjct: 482 ISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGL 541

Query: 430 EPNS 433
            P++
Sbjct: 542 TPDN 545



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 136/317 (42%), Gaps = 38/317 (11%)

Query: 254 PNMYICRTIIDVCGICGD--YMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN++ C  +ID   +C D  + ++  ++  + ++ +  N   +  L++       +   L
Sbjct: 333 PNLFACNALID--KLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDAL 390

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            ++  M++ G+   +  YN L+   C   N   A+   G +  +  KG L     +YS +
Sbjct: 391 CMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQAR---GLLNEMVEKG-LAPSAASYSPL 446

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A+++  +M   GV+ N  T+++LI+     G +++A  LF++M+ +  
Sbjct: 447 IAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSV 506

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR-------ISNM 482
            PN    N++++         +AF+L+         V  G   D  T R       ++  
Sbjct: 507 VPNEVTFNVMIEGYCRVGNVRKAFQLY------DQMVDRGLTPDNYTYRSLISVLCLTLG 560

Query: 483 EHKDKQSITNTPN--FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMR 540
             K K+ + +  N   V N          SF  TT  Y    +   T+ Y +    +EMR
Sbjct: 561 AMKAKEFVDDLENNCVVLN----------SFSLTTLMYGFCKEGRLTETYHI---WDEMR 607

Query: 541 TVGLSPNHISWTILIDA 557
             G+  + IS+T+++ A
Sbjct: 608 ARGVKLDLISFTVIVYA 624



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 53/95 (55%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +  T++T++K F  A   Q A+ + ++   +G  P+ I++S++IN     G + +A  L+
Sbjct: 753 NTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLW 812

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            EML  G +P+    NIL++ C    +FD+   ++
Sbjct: 813 NEMLYKGLKPDIVAYNILIRWCNIHGEFDKGLGIY 847



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 131/311 (42%), Gaps = 26/311 (8%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGV 320
           + G+C  GD   +  ++ ++    V+ N+Y F +L++    D  +     ++  M    V
Sbjct: 447 IAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSV 506

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
           + +  ++N++++  C  GN   A ++Y +   +  +G L  D +TY +++ V        
Sbjct: 507 VPNEVTFNVMIEGYCRVGNVRKAFQLYDQ---MVDRG-LTPDNYTYRSLISVLCLTLGAM 562

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A +  +D+ +  V  N+ + ++L+      G + +  H+++EM   G + +     +++
Sbjct: 563 KAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIV 622

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
            A ++    ++   LFR       +  +  D   +T  I    H  +++I    N     
Sbjct: 623 YAALKLHDGEKISVLFREM----KEKGVKPDNVFHTCMID--VHSKEENIVQALN----- 671

Query: 501 HYSSFDKRFS--FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILID 556
               +DK  +    P   TY +L+   C   Y   A  L  EM      PN  ++   +D
Sbjct: 672 ---CWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLD 728

Query: 557 ACGGSGNVEGA 567
                G +E A
Sbjct: 729 FLANEGELEKA 739



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 89/198 (44%), Gaps = 13/198 (6%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K+ ++V AL  +D       SPN+     +I+     G    ++ + E++       N +
Sbjct: 662 KEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSF 721

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLAGNTVLAQEIYGE 349
            +N  ++  A++ +  LE  K +      G +A+  ++N L+K  C AG      +I G 
Sbjct: 722 TYNCFLDFLANEGE--LEKAKVLHATILEGCLANTVTFNTLIKGFCKAG------QIQGA 773

Query: 350 VKHLE--AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
           +  ++   +     D  +YSTI+           A ++  +ML  G+ P+ + ++ LI  
Sbjct: 774 IDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILIRW 833

Query: 408 CANAGLVEQAMHLFEEML 425
           C   G  ++ + ++ +M+
Sbjct: 834 CNIHGEFDKGLGIYSDMV 851



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 50/254 (19%), Positives = 99/254 (38%), Gaps = 38/254 (14%)

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
           ++ +LG++ ++ + N L+   C       A+ ++   + +  +G L+ +  TY+ ++   
Sbjct: 325 HLGELGMVPNLFACNALIDKLCKDRRFREAERLF---RGMANRG-LEPNEVTYAILIHSL 380

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
                   AL + + M   G+      ++SLIN         QA  L  EM++ G  P++
Sbjct: 381 CKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSA 440

Query: 434 QCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISNMEHK 485
              + L+           A  L R            + T +  G   DGN D  + +   
Sbjct: 441 ASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARL--- 497

Query: 486 DKQSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYNILMKACCT--DYYRVKALMNEMRT 541
                              FDK    S  P   T+N++++  C   +  +   L ++M  
Sbjct: 498 -------------------FDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVD 538

Query: 542 VGLSPNHISWTILI 555
            GL+P++ ++  LI
Sbjct: 539 RGLTPDNYTYRSLI 552


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 23/251 (9%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L V   M K GV  ++ +YN ++   CL  N  +A++I+  +     K  L+ D+  Y+ 
Sbjct: 425 LGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRM----VKSGLEPDILNYNV 480

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  +   +    A+ + ++M    + P+  +++SLI+   N G +     L +EM  +G
Sbjct: 481 LINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSG 540

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG--EDYDGNTDRISNMEHKD 486
             P+    NILL A  +   FD+A  LFR       Q+  G   D+  N   + N+   +
Sbjct: 541 QSPDVITYNILLDAFCKTQPFDKAISLFR-------QIVEGIWPDFYTNHAIVDNLCKGE 593

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGL 544
           K  +          H  S        P   TY IL+ A C D  +     L+++M     
Sbjct: 594 KLKMAEDALKHLLMHGCS--------PNVQTYTILINALCKDGSFGEAMLLLSKMEDNDR 645

Query: 545 SPNHISWTILI 555
            P+ I++ I+I
Sbjct: 646 PPDAITFEIII 656



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 153/358 (42%), Gaps = 29/358 (8%)

Query: 211 IRYACIVPRADI---LFCNFVREFGKK----RDLVSALRAYDASKKHLSSPNMYICRTII 263
           IRYA  +P+  I    F +F  +   K    R++  A+  ++   +    P   +   ++
Sbjct: 5   IRYA--IPKFSISSRFFGHFQPQNPHKNCRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLL 62

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVM 321
                 G Y  + +++  L+S+ ++ +I  F  L+N   H     F   +   + K G  
Sbjct: 63  GAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQ 122

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            ++ ++N ++   C+ G    A +     ++L A+G L  D FTY T++   +     + 
Sbjct: 123 PNLVTFNTIINGFCINGMIFKALDF---CQNLLAQGYL-FDQFTYGTLINGLSKNGQIKA 178

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           AL + ++M  + V PN + +S+LI+     G V  A+ L  ++ + G   ++   N L+ 
Sbjct: 179 ALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLID 238

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
            C    ++    +L              +DY  N   + +   K+ + +           
Sbjct: 239 GCCSVGRWQEVTQLLTKMVRENVD---PDDYTFNI--LIDALCKEGRILE------AQGV 287

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
            +   KR   KP   TYN LM+  C+  + +  + L N M   GL P+ +++ +LID 
Sbjct: 288 LAMMSKRGE-KPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDG 344



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 137/344 (39%), Gaps = 55/344 (15%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
            PN+    TII+   I G   K+    ++L +Q    + + + +L+N  + +  +K  L 
Sbjct: 122 QPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALH 181

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + + M+K  V  ++  Y+ L+   C  G      +  G    +  +G+L LD  TY++++
Sbjct: 182 LLQEMEKSSVQPNLVMYSALIDGLCKDG---FVSDALGLCSQIGERGIL-LDAVTYNSLI 237

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL----------------- 413
                   WQ   ++   M+   V P+  T++ LI+A    G                  
Sbjct: 238 DGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEK 297

Query: 414 ------------------VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
                             V +A  LF  M++ G EP+    N+L+    +    D A  L
Sbjct: 298 PDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVL 357

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           F+    +K  V     Y+   D + N        I++    +   H S      +  P  
Sbjct: 358 FKELC-NKNLVPTIASYNSLIDGLCN-----SGRISHVKKLLDEMHGS------AQPPDV 405

Query: 516 TTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDA 557
            TYNIL+ A C +   ++AL  +  M   G+ PN +++  ++D 
Sbjct: 406 VTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDG 449



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 9/193 (4%)

Query: 267 GICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G C   M   AI  ++++R +N+  +I  +NSL++   N   +    E+   M   G   
Sbjct: 484 GYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSP 543

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+ +YNILL A C       A  ++ ++     +G+   D +T   IV      +  +MA
Sbjct: 544 DVITYNILLDAFCKTQPFDKAISLFRQI----VEGIWP-DFYTNHAIVDNLCKGEKLKMA 598

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
               + +L  G +PN  T++ LINA    G   +AM L  +M      P++    I++  
Sbjct: 599 EDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGV 658

Query: 443 CVEACQFDRAFRL 455
            ++  + D+A +L
Sbjct: 659 LLQRNETDKAEKL 671


>gi|356557981|ref|XP_003547288.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 706

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 107/226 (47%), Gaps = 7/226 (3%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +F   ++ +G   + V  L  Y+  K   + PN+     ++   G       ++AIY ++
Sbjct: 288 VFSGLIKMYGVSGNYVGCLNVYNDMKVLGAKPNLTTYNALLYAMGRAKRARDAKAIYGEM 347

Query: 283 RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            S  ++ N   + +L+     A   +  L VYK M++ G   D+  YN+L   C   G  
Sbjct: 348 ISNGLSPNWPTYAALLQAYCRARFNRDALNVYKEMKEKGKDLDILLYNMLFDMCANVGCV 407

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AKWWQMALKVKEDMLSAGVTPNTI 399
             A +I+   +H+++ G    D FTY++++ +++   K  +M     E M+ +G  PN I
Sbjct: 408 DEAVKIF---EHMKSSGTCPPDSFTYASLINMYSSIGKILEMEAMFNE-MMESGFEPNII 463

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             +SL++    A   +  + +F +++  G  P+ + C+ LL A  +
Sbjct: 464 VLTSLVHCYGKAKRTDDVVKIFNQLMDLGISPDGRFCDCLLYAMTQ 509



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 13/223 (5%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           ALR YD +K      +  +   +I + G+ G+Y+    +Y D++      N+  +N+L+ 
Sbjct: 270 ALRLYDRAKAGKWHVDTAVFSGLIKMYGVSGNYVGCLNVYNDMKVLGAKPNLTTYNALLY 329

Query: 300 V-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
                  A D K    +Y  M   G+  +  +Y  LL+A C A     A  +Y E+K   
Sbjct: 330 AMGRAKRARDAK---AIYGEMISNGLSPNWPTYAALLQAYCRARFNRDALNVYKEMKE-- 384

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TPNTITWSSLINACANAGL 413
            KG   LD+  Y+ +  + A+      A+K+ E M S+G   P++ T++SLIN  ++ G 
Sbjct: 385 -KGK-DLDILLYNMLFDMCANVGCVDEAVKIFEHMKSSGTCPPDSFTYASLINMYSSIGK 442

Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           + +   +F EM+++G EPN      L+    +A + D   ++F
Sbjct: 443 ILEMEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIF 485



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 93/183 (50%), Gaps = 7/183 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           P+  +C ++I      G+   +  +Y+  ++    ++  VF+ L+ +      +   L V
Sbjct: 249 PDNNVCSSMIYAYTRTGNTDMALRLYDRAKAGKWHVDTAVFSGLIKMYGVSGNYVGCLNV 308

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y +M+ LG   ++ +YN LL A   A     A+ IYGE+        L  +  TY+ +++
Sbjct: 309 YNDMKVLGAKPNLTTYNALLYAMGRAKRARDAKAIYGEM----ISNGLSPNWPTYAALLQ 364

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CE 430
            +  A++ + AL V ++M   G   + + ++ L + CAN G V++A+ +FE M  +G C 
Sbjct: 365 AYCRARFNRDALNVYKEMKEKGKDLDILLYNMLFDMCANVGCVDEAVKIFEHMKSSGTCP 424

Query: 431 PNS 433
           P+S
Sbjct: 425 PDS 427



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 20/296 (6%)

Query: 179 EVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY---ACIVPRADILFCNFVREFGKKR 235
           E+L+     V E D  F I+   VN     LA+ Y        R  IL+   ++ F K +
Sbjct: 137 EILKVLGDSVLEPDAVF-ILNSMVNPYTALLAVEYFKQKVKSVRHVILYNVTLKLFRKVK 195

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS------QNVTL 289
           D   A + +D       +PN+    T+I    +C    K+   +E + S       NV  
Sbjct: 196 DFEGAEKLFDEMLHRGVNPNLITFSTMISCASVCSLPHKAVKWFEMMPSFGCEPDNNVCS 255

Query: 290 N-IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           + IY +    N +       L +Y   +      D A ++ L+K   ++GN V    +Y 
Sbjct: 256 SMIYAYTRTGNTD-----MALRLYDRAKAGKWHVDTAVFSGLIKMYGVSGNYVGCLNVYN 310

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           ++K L AK  L     TY+ ++     AK  + A  +  +M+S G++PN  T+++L+ A 
Sbjct: 311 DMKVLGAKPNLT----TYNALLYAMGRAKRARDAKAIYGEMISNGLSPNWPTYAALLQAY 366

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
             A     A+++++EM + G + +    N+L   C      D A ++F     S T
Sbjct: 367 CRARFNRDALNVYKEMKEKGKDLDILLYNMLFDMCANVGCVDEAVKIFEHMKSSGT 422


>gi|255661186|gb|ACU25762.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 426

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 124/252 (49%), Gaps = 6/252 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  V  N   + +L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVMPNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +A + DRA  
Sbjct: 216 VQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAM 275

Query: 455 LFRSWTLSKTQV 466
           LF+    S  ++
Sbjct: 276 LFQKLRSSGVEI 287



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/319 (20%), Positives = 129/319 (40%), Gaps = 55/319 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLE 310
           SP+ Y   T+I   G  G +  + +  + +    V  ++ ++++L+ ++    D    + 
Sbjct: 6   SPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAIS 65

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  +++ G   D+ +YN ++      G   L +E    +  +   GV+  +  +Y+T++
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVF---GKAKLFREARSLISEMRTAGVMP-NTASYTTLL 121

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            ++ + K +  AL V  +M       +  T + +I+     G+ ++A  LF  M + G E
Sbjct: 122 TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN    N LL+   +A  F  A  LFR                                +
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFR--------------------------------L 209

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNH 548
               N V N                 TYN +M       ++ +   L+ EM+  G+ PN 
Sbjct: 210 MQRKNIVQN---------------VVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNS 254

Query: 549 ISWTILIDACGGSGNVEGA 567
           I+++ +I   G +G ++ A
Sbjct: 255 ITYSTIISIWGKAGKLDRA 273



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/250 (20%), Positives = 117/250 (46%), Gaps = 11/250 (4%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +R A ++P     +   +  + + +  + AL  +   ++     ++  C  +IDV G  G
Sbjct: 105 MRTAGVMPNT-ASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLG 163

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN 328
              ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ+  ++ ++ +YN
Sbjct: 164 MAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYN 223

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++  A     A  + + 
Sbjct: 224 SMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKAGKLDRAAMLFQK 279

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           + S+GV  + + + ++I A   AGLV  A  L  E+      P     +IL      A +
Sbjct: 280 LRSSGVEIDQVLYQTMIVAYEKAGLVAHAKRLLHELKSPDNIPRDTAIHIL----AGAGR 335

Query: 449 FDRAFRLFRS 458
            + A  +FR 
Sbjct: 336 IEEATYVFRQ 345


>gi|414591144|tpg|DAA41715.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
          Length = 521

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 178/410 (43%), Gaps = 60/410 (14%)

Query: 81  LAKDGRLEEFAMIVESVVVS-EGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKL 139
           L + GRL + A ++E  + S  G+VS FA+     +V  G+ KS   GR+D    +L  +
Sbjct: 105 LRRAGRLADAAGLLERALGSCPGSVSPFAA----SVVVDGLCKS---GRVDDARRLLDDM 157

Query: 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLME------VLEEFRLPVKELDE 193
              GV+     +   +  L +   R  D G V+  + +ME       +  + + V  L  
Sbjct: 158 PRHGVS----LNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLST 213

Query: 194 EFRI--VQLCVNKPDVNLAIRYACIVPRADI-LFCNFVREFGKKRDLVSALRAYDASKKH 250
              I  V+   N+   N  +         D+ L+   +  + +  ++  A +  D    +
Sbjct: 214 ARDISKVEALFNEMKANNVV--------GDVYLYTAVINAYCRAGNMRRAAKVLDECVGN 265

Query: 251 LSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-------- 300
              PN      +I   G C  G    +  +  D++ Q V LN  +FN++++         
Sbjct: 266 GVEPNERTYGVLIK--GFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVD 323

Query: 301 NAHDLKFTLE---------VYKNMQ----KLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +A  +K  +E          Y  +     ++GV+ +  +Y  L+   C  G+ V A+ ++
Sbjct: 324 DALKIKAAMEKIGVELNIYTYNTLACGLCRMGVVPNYVTYTTLISIHCKDGDMVEARRLF 383

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
              + +  KG     V TYS ++  +A     + A + +++M   G  P+  T++SL++ 
Sbjct: 384 ---REMAEKGATP-SVLTYSVMIHGYAKKGRIREAERFRKEMEKKGFVPDVYTYASLVHG 439

Query: 408 -CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            C N G V+ A+ LFEEM Q G EPN      L+    +  + + AF+L+
Sbjct: 440 HCVN-GKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLY 488



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 141/366 (38%), Gaps = 42/366 (11%)

Query: 212 RYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-- 269
           R   + PR+       +R  G+  D    L     S     SP  +    ++D  G+C  
Sbjct: 89  RLGSLDPRSLTFSLLSLRRAGRLADAAGLLERALGSCPGSVSP--FAASVVVD--GLCKS 144

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G    +R + +D+    V+LN   +NSL++  V   D     E+ + M+  G+ A + +Y
Sbjct: 145 GRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTY 204

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            IL+ +   A +    + ++ E+K     G    DV+ Y+ ++  +  A   + A KV +
Sbjct: 205 TILVDSLSTARDISKVEALFNEMKANNVVG----DVYLYTAVINAYCRAGNMRRAAKVLD 260

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           + +  GV PN  T+  LI      G +E A  L  +M   G   N    N ++       
Sbjct: 261 ECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKG 320

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
             D A ++     + K  V L                          N    +  +    
Sbjct: 321 MVDDALKI--KAAMEKIGVEL--------------------------NIYTYNTLACGLC 352

Query: 508 RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           R    P   TY  L+   C D   V+A  L  EM   G +P+ ++++++I      G + 
Sbjct: 353 RMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIR 412

Query: 566 GALQCR 571
            A + R
Sbjct: 413 EAERFR 418



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 80/156 (51%), Gaps = 6/156 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           PN     T+I +    GD +++R ++ ++  +  T ++  ++ +++  A    ++     
Sbjct: 358 PNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERF 417

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            K M+K G + D+ +Y  L+   C+ G   +A +++ E+K    +G  + +V  Y+ ++ 
Sbjct: 418 RKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQ---RGT-EPNVVAYTALIS 473

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             A     + A ++ +DML AG+ P+   +S+L+ +
Sbjct: 474 GLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGS 509


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 112/256 (43%), Gaps = 53/256 (20%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+  M+  G+ +    YN  +      GN+  A+EI+  +K    K   K    TY+ ++
Sbjct: 212 VFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMK----KDACKPTTETYTMLI 267

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            ++  A    MALK+  +M+S    PN  T+++L+NA A  GL E+A  +FE+M +AG E
Sbjct: 268 NLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLE 327

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P+    N L++A      + RA                G  Y G  +  S M+H      
Sbjct: 328 PDVYAYNALMEA------YSRA----------------GYPY-GAAEIFSLMQH------ 358

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR--VKALMNEMRTVGLSPNH 548
                                +P   +YNIL+ A     ++   +A+  +M+ VG++P  
Sbjct: 359 ------------------MGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTM 400

Query: 549 ISWTILIDACGGSGNV 564
            S  +L+ A    G+V
Sbjct: 401 KSHMVLLSAYSKMGSV 416



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 143/317 (45%), Gaps = 31/317 (9%)

Query: 268 ICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMA 325
           I G   K+ A++ ++R+  +  +  V+N+ +N  +   +     E++K M+K        
Sbjct: 202 ISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTE 261

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +Y +L+     AG + +A +++ E+   + K     ++ TY+ +V  FA     + A +V
Sbjct: 262 TYTMLINLYGKAGKSFMALKLFHEMMSHDCKP----NICTYTALVNAFAREGLCEKAEEV 317

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            E M  AG+ P+   +++L+ A + AG    A  +F  M   GCEP+    NIL+ A  +
Sbjct: 318 FEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGK 377

Query: 446 ACQFDRAFRLFRSW------TLSKTQVALGEDYD--GNTDRISNMEHKDKQSITNTPNFV 497
           A   D A  +F+           K+ + L   Y   G+ ++   + ++  +S      +V
Sbjct: 378 AGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYV 437

Query: 498 PNSHYSSFDK---------------RFSFKPTTTTYNILMKACCTDYY--RVKALMNEMR 540
            NS  + + +               + S+    +TYNIL+       +  R++ L   + 
Sbjct: 438 LNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLP 497

Query: 541 TVGLSPNHISWTILIDA 557
           + GL P+ ++WT  I A
Sbjct: 498 SKGLKPDVVTWTSRIGA 514



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/297 (20%), Positives = 117/297 (39%), Gaps = 70/297 (23%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           +GK      AL+ +     H   PN+     +++     G   K+  ++E ++   +  +
Sbjct: 270 YGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPD 329

Query: 291 IYVFNSLMNV--------NAHDLKFTL------------------------------EVY 312
           +Y +N+LM           A ++ F+L                               V+
Sbjct: 330 VYAYNALMEAYSRAGYPYGAAEI-FSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVF 388

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEI----------------------YG-- 348
           K+M+++G+   M S+ +LL A    G+    +EI                      YG  
Sbjct: 389 KDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRL 448

Query: 349 -------EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
                  EV  +  KG    D+ TY+ ++  +  A + +    + + + S G+ P+ +TW
Sbjct: 449 GQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTW 508

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +S I A +   L  + + +FEEM+  GC P+     +LL AC    Q ++   + R+
Sbjct: 509 TSRIGAYSKKKLYLKCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIRT 565



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 6/174 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--E 310
           +P M     ++      G   K   I   +    + L+ YV NS++N+     +F    E
Sbjct: 397 TPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEE 456

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M+K   +AD+++YNIL+     AG     ++++   + L +KG LK DV T+++ +
Sbjct: 457 VLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLF---QLLPSKG-LKPDVVTWTSRI 512

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
             ++  K +   L++ E+M+  G  P+  T   L+ AC+N    EQ   +   M
Sbjct: 513 GAYSKKKLYLKCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTM 566



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 99/238 (41%), Gaps = 34/238 (14%)

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV-KEDMLSAGVTPNTI 399
           V ++ I+G +  L        D+FT +  +++    K W   + + +  +L +   P+ I
Sbjct: 100 VESESIWGSLDMLPPTLDAWDDIFTVAVQLRM---RKQWDSIISICRWILLRSSFKPDVI 156

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF--- 456
            ++ LI A     L ++A   + ++L+A C P      +L++A   +   ++A  +F   
Sbjct: 157 CYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGLLEKAEAVFAEM 216

Query: 457 RSWTLSKTQVAL-----GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           R++ L  + V       G    GN+D+   +  + K+                     + 
Sbjct: 217 RNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKD--------------------AC 256

Query: 512 KPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           KPTT TY +L+         +    L +EM +    PN  ++T L++A    G  E A
Sbjct: 257 KPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKA 314


>gi|147778635|emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera]
          Length = 466

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 143/337 (42%), Gaps = 47/337 (13%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           T+I+  G  G  +++ AI+ ++    + L++ V+N ++   +    L+   +V   M  L
Sbjct: 82  TVIEALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDAL 141

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  + A+Y  L+     AG       + GE+    ++     D F YS ++ V+ D   
Sbjct: 142 GIGRNRATYEALVDYYGRAGRLNDVWAVIGEM----SRDGFGPDSFVYSKVIGVYRDNGM 197

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           W+ A+++  ++   GV+ +   ++S+I+     G + +A+ +FE+M + G +P+    N 
Sbjct: 198 WKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNS 257

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVA---------------LGED--YDGNTDRISN 481
           L+Q   +A    +A  LF     SK Q                 LGE   +D       N
Sbjct: 258 LIQWHCKAGDVGKALELF-----SKMQEEGLYPDPKIFITIISRLGEQGKWDVIKRNFEN 312

Query: 482 MEHKDKQSITNTPNFVPN--SHYSSFD---------KRFSFKPTTTTYNILMKA-----C 525
           M+ +  Q        + +    Y  F          K    +P+ + + +L  A      
Sbjct: 313 MKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANAYAQQGL 372

Query: 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
           C    +V  LM    T G+ PN I   +LI+A G +G
Sbjct: 373 CEQTVKVLQLME---TEGIEPNLIMLNMLINAFGIAG 406



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 37/225 (16%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
            P+ ++   +I V    G + K+  I  ++R   V+L+  ++NS+++      +L   LE
Sbjct: 179 GPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALE 238

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH----------------LE 354
           V++ MQ+ GV  D+ ++N L++  C AG+   A E++ +++                 L 
Sbjct: 239 VFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLG 298

Query: 355 AKGVLKLDVF-----------------TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            +G  K DV                   Y+ +V ++     +Q   +    + S G+ P+
Sbjct: 299 EQG--KWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPS 356

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
              +  L NA A  GL EQ + + + M   G EPN    N+L+ A
Sbjct: 357 ASMFCVLANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINA 401



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 30/268 (11%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           D+   +++   M+ LG    + SY  +++A    G T+ A+ I+ E+ HL     LKLD+
Sbjct: 57  DVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLG----LKLDL 112

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
             Y+ +++        ++A KV  +M + G+  N  T+ +L++    AG +     +  E
Sbjct: 113 RVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGE 172

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M + G  P+S   + ++    +   + +A  + R   + +  V+L         RI N  
Sbjct: 173 MSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVRE--IREMGVSL-------DKRIYN-- 221

Query: 484 HKDKQSITNTPNFVPNSHYSS----FDK--RFSFKPTTTTYNILMKACCT--DYYRVKAL 535
                SI +T  F      S     F+K      KP   T+N L++  C   D  +   L
Sbjct: 222 -----SIIDT--FGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALEL 274

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGN 563
            ++M+  GL P+   +  +I   G  G 
Sbjct: 275 FSKMQEEGLYPDPKIFITIISRLGEQGK 302



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 46/230 (20%)

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNM 315
           I  +IID  G CG+  ++  ++E ++ + V  +I  +NSL+  +  A D+   LE++  M
Sbjct: 219 IYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKM 278

Query: 316 QKLGVMADMASYNILLKACCLAGN----------------------TVLAQEIYGE---- 349
           Q+ G+  D   +  ++      G                         +  +IYG+    
Sbjct: 279 QEEGLYPDPKIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRF 338

Query: 350 ------VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
                 +  L+++G+ +     +  +   +A     +  +KV + M + G+ PN I  + 
Sbjct: 339 QGPEECISALKSEGI-QPSASMFCVLANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNM 397

Query: 404 LINACANAGLVEQAM-----------HLFEEMLQAGCEPNSQCCNILLQA 442
           LINA   AG   +A+            ++EEM  AGC P+ +   +L  A
Sbjct: 398 LINAFGIAGRHLEALSVYHHIKDTVPEIYEEMESAGCTPDRKAREMLQTA 447


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 150/343 (43%), Gaps = 37/343 (10%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SP  Y+   +ID+ G    +  +  + + ++++NV + +  F  L+   V A      + 
Sbjct: 145 SPEPYM--EMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVH 202

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            +  M+  G   D  ++++++ +       + AQ  +  +K        + DV  Y+++V
Sbjct: 203 AFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDR-----FEPDVVVYTSLV 257

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +  A     A +V  +M  AG+ PN  T+S +I+A   +G + +A  +F EM+  GC+
Sbjct: 258 HGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCD 317

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWT-LSKTQVALGEDY-------DGNTDRISNM 482
           PN+   N L++  V+A + ++  +++     L     A+  ++       D N +    +
Sbjct: 318 PNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKI 377

Query: 483 EHKDKQSIT-NTPNFVP-----------NSHYSSFDKRFSFK--PTTTTYNILMKACC-- 526
            +  K+    N  +F P           NS +  F K    K  P T TYNILM+     
Sbjct: 378 LNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADK 437

Query: 527 --TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             TD   V  L  EM    + PN  ++ +LI    G G+   A
Sbjct: 438 KSTDM--VLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNA 478



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 7/238 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +++ + V  + +  ++  A R +   K     PN+Y    +ID     G   ++  ++ +
Sbjct: 251 VVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSE 310

Query: 282 LRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +       N   FN+LM  +V A   +  L+VY  M++LG   D  +YN L+++ C   N
Sbjct: 311 MIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDN 370

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A +I   VK    KG   L+  +++ I    +       A ++   M      PNT+
Sbjct: 371 LEEAVKILNSVK----KGC-NLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTV 425

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           T++ L+   A+    +  + L +EM +   EPN+    +L+        ++ A+  F+
Sbjct: 426 TYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFK 483


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 135/316 (42%), Gaps = 32/316 (10%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGV 320
           V G+C  GD   +  I +++ +     N+ ++ +L+       +F   + V K M++ G+
Sbjct: 427 VKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGI 486

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             D   YN L+     A     A+    E+     +   K D FTY   +  + +A  + 
Sbjct: 487 APDTFCYNSLIIGLSKAKKMDEARSFLLEM----VENGFKPDAFTYGAFISGYIEAGEFA 542

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A K  ++ML  GV PN +  + LIN     G V +A   F  M++ G   +++   +L+
Sbjct: 543 SADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLM 602

Query: 441 QACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
              V+  + + A  +F   R   ++    + G   DG + ++ NM+              
Sbjct: 603 NGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFS-KLGNMQKAS----------- 650

Query: 498 PNSHYSSFDKRFSFKPTTTT--YNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTI 553
                S FD+      T+    YN+L+   C   +  + K L++EM   G  PN +++  
Sbjct: 651 -----SIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCT 705

Query: 554 LIDACGGSGNVEGALQ 569
           +ID    SG++  A Q
Sbjct: 706 IIDGYCKSGDLAEAFQ 721



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 132/308 (42%), Gaps = 17/308 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN  +C  +I+     G  +++ + +  +  Q +  +   +  LMN  V    +    E+
Sbjct: 558 PNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEI 617

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M+  G+  D+ SY  L+      GN   A  I+ E+     +  L  +V  Y+ ++ 
Sbjct: 618 FHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEM----VQAGLTSNVIIYNMLLG 673

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F  +   + A ++ ++M   G  PN +T+ ++I+    +G + +A  LF+EM   G  P
Sbjct: 674 GFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVP 733

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +S     L+  C      +RA  +F   T  K   +    ++   + +   +    +  T
Sbjct: 734 DSFVYTTLVDGCCRLNDVERAITIFE--TNEKGCASSSAPFNALINWV--FKFGKTELTT 789

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHI 549
           +  N + +  +  F      KP   TYNI++   C +      K L + M+   L P  I
Sbjct: 790 DMINRLMDGSFDKFG-----KPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVI 844

Query: 550 SWTILIDA 557
           ++T L++ 
Sbjct: 845 TYTSLLNG 852



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 110/247 (44%), Gaps = 18/247 (7%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P   + +C  +  + K  DL  A + +D  K     P+ ++  T++D C    D  ++  
Sbjct: 697 PPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAIT 756

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNM-----QKLGVMADMASYNIL 330
           I+E    +    +   FN+L+N        + T ++   +      K G   D+ +YNI+
Sbjct: 757 IFET-NEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDV-TYNIM 814

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +   C  GN   A+E++    H   K  L   V TY++++  +           V ++++
Sbjct: 815 IDYLCKEGNLEAAKELF----HHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVI 870

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEM-----LQAGCEPNSQCCNILLQACVE 445
           +AG+ P+ I +S +INA    G+  +A+ L ++M     +  GC+ +   C  LL    +
Sbjct: 871 AAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAK 930

Query: 446 ACQFDRA 452
             + + A
Sbjct: 931 VGEMEVA 937



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 110/288 (38%), Gaps = 41/288 (14%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M   GV     +Y  L++      N     E+  E+K    K  + +  +TY T V
Sbjct: 372 LFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIK----KRNIVISPYTYGTAV 427

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           K    +     A  + ++M ++G  PN + +++LI           A+ + +EM + G  
Sbjct: 428 KGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIA 487

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P++ C N L+    +A + D A    RS+ L   +     D       IS   + +    
Sbjct: 488 PDTFCYNSLIIGLSKAKKMDEA----RSFLLEMVENGFKPDAFTYGAFISG--YIEAGEF 541

Query: 491 TNTPNFV---------PN--------SHYSSFDKRF----SFKPT--------TTTYNIL 521
            +   +V         PN        + Y    K      +F+            TY +L
Sbjct: 542 ASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVL 601

Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           M     +      + + +EMR  G++P+  S+  LID     GN++ A
Sbjct: 602 MNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKA 649



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 20/161 (12%)

Query: 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           ++ ++L+  N  DL +  +VYK M +  V+ D+ SY +L+ A C  GN  LA+++   +K
Sbjct: 194 HLLDALLKRNRLDLFW--DVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVL--LK 249

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
             E  G   L+V                  AL++K+ M   G+ P+  +++ LI+     
Sbjct: 250 TEEELGTATLNV----------------DEALELKKSMSCKGLVPSRQSYNLLIDGLCKQ 293

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
             +E A  L  EM   G   ++   +IL+   ++    D A
Sbjct: 294 KRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAA 334



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 103/244 (42%), Gaps = 31/244 (12%)

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFA------DAKW-----WQMALKVKEDMLSAGVTPNTI 399
           + L++   L LD+  + +I K  +      + KW     W   ++   + +        +
Sbjct: 95  QKLDSFSFLALDLCNFGSIEKAHSVVIRMIERKWPVAEVWSSIVRCLREFVGKS-DDRVL 153

Query: 400 TWSSLINACANAGLVEQAMHLFEEM--LQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +  LI+     G +++A+ +F     L     P+   CN LL A ++  + D  + +++
Sbjct: 154 LFGILIDGYIEKGFLDEAVFVFSSTKDLDLDLVPSLARCNHLLDALLKRNRLDLFWDVYK 213

Query: 458 S-------WTLSKTQVALGED-YDGNTDRISNMEHKDKQSI-TNTPNFVPNSHYSSFDKR 508
                   + +   ++ +G    DGN     ++  K ++ + T T N           K 
Sbjct: 214 GMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNV---DEALELKKS 270

Query: 509 FSFK---PTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
            S K   P+  +YN+L+   C        K+L+ EM +VGL  ++++++ILID      N
Sbjct: 271 MSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRN 330

Query: 564 VEGA 567
            + A
Sbjct: 331 ADAA 334



 Score = 38.9 bits (89), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 18/192 (9%)

Query: 226 NFVREFGKKR---DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           N+V +FGK     D+++  R  D S      PN      +ID     G+   ++ ++  +
Sbjct: 777 NWVFKFGKTELTTDMIN--RLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHM 834

Query: 283 RSQNVTLNIYVFNSLMNVNAHD----LKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           +  N+   +  + SL+N   +D          V+  +   G+  D   Y++++ A    G
Sbjct: 835 QKANLMPTVITYTSLLN--GYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEG 892

Query: 339 NTVLAQEIYGEVKHLEAKGVL----KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
            T  A  +   +  + AK  +    KL + T   ++  FA     ++A KV E+M+    
Sbjct: 893 MTTKALVL---LDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVVENMVRLKY 949

Query: 395 TPNTITWSSLIN 406
            P++ T   LIN
Sbjct: 950 IPDSSTVIELIN 961


>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 129/293 (44%), Gaps = 21/293 (7%)

Query: 269 CGDYMKSRAIYED-LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMA 325
           CG    + A++E  ++    + +++ FN  +       D++  LE+ + M + G   D  
Sbjct: 205 CGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGVCQVGDVQKALELVERMAEFGCSPDTV 264

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           + NIL+   C        +E+   ++ L+  GV   +V TY++++  +  +   + A+ V
Sbjct: 265 TNNILVGGLCRVKEVSRGREV---LRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAV 321

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             DM+  G TPN +T++ LIN    AG +  A+ ++++M+   C P+    + L+     
Sbjct: 322 YNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCR 381

Query: 446 ACQFDRAFRLFRSWT-LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
             Q D A    R+WT +S+ Q+      + +T  I  +    +        F+       
Sbjct: 382 CGQLDDA---MRTWTEMSQYQI----QPNAHTFSIIILSFCKQNRSAEALRFL-----KE 429

Query: 505 FDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILI 555
            + R    P     N ++   C      +A  ++ EM   G  P+  ++TILI
Sbjct: 430 LNMRTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGCRPDKYTYTILI 482



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/250 (17%), Positives = 103/250 (41%), Gaps = 8/250 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + + + +  + K   +  A+  Y+      ++PN      +I+  G  G+   + A+Y+ 
Sbjct: 300 VTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQ 359

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +    ++  F++L++       L   +  +  M +  +  +  +++I++ + C    
Sbjct: 360 MILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNR 419

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           +  A      +K L  +  +    F  + ++ V         A  +  +M   G  P+  
Sbjct: 420 SAEALRF---LKELNMRTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGCRPDKY 476

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA---CQFDRAFRLF 456
           T++ LI      G + +A+  F +M+  GC P+S   N  +   ++A    + DR  ++ 
Sbjct: 477 TYTILIIGHCMKGRISEAITFFNKMVDTGCSPDSITVNSFIGCLLKAGMPSEVDRIMKIA 536

Query: 457 RSWTLSKTQV 466
              T S  +V
Sbjct: 537 SGSTSSSQEV 546



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 365 TYSTIVKVFADAKWWQMALKVKEDML-SAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
           +Y  ++ +   +     ALK+ + M   +G  PN    S L  +CANAG ++ A  L  +
Sbjct: 123 SYRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAAAALLSK 182

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-------------TLSKTQVALGE 470
             Q GC   +   N L+ + +   +   A  LF  W              ++   V    
Sbjct: 183 APQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGVCQVG 242

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPN--------SHYSSFDKRFSFK----PTTTTY 518
           D     + +  M        T T N +          S      +R        P   TY
Sbjct: 243 DVQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTY 302

Query: 519 NILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             ++   C         A+ N+M   G +PN +++ +LI+  G +GN+  A+
Sbjct: 303 TSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAV 354


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 163/410 (39%), Gaps = 74/410 (18%)

Query: 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266
           V L IR    V R    F   +  + +   L SA+R     +K   +P++ IC   ++V 
Sbjct: 150 VRLMIRRG--VRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVL 207

Query: 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--------VNAHDL------------- 305
            + G   K+    E +R   V  ++Y +N L+         V+A ++             
Sbjct: 208 VVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDK 267

Query: 306 -------------KFTLEVYKNMQKL----GVMADMASYNILLKACCLAGNTVLAQEIYG 348
                        K   EV   +Q++    G+  D  +YN+L+      G+   A E   
Sbjct: 268 ISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGH---ADEALE 324

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            ++  E K   ++D   YS IV  F        A ++  +M+S G  P+ +T+S++++  
Sbjct: 325 FLRESEGKR-FRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGF 383

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS-----WT--- 460
              G ++QA  + + M +  C+PN+     LL    +  +   A+ L        WT   
Sbjct: 384 CRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSD 443

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
           ++ + V  G   +G          K K+S       +             F PTT   N+
Sbjct: 444 ITYSVVMHGFRREG----------KLKESCDVVVQMLQK----------GFFPTTVEINL 483

Query: 521 LMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           L+ A C D    +A   M + ++ G + N +++T +I      G++E AL
Sbjct: 484 LIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESAL 533



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 27/213 (12%)

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           +  ++ + ++ +    A +V   M+  GV   T  ++ L+ + + AG +  AM +   M 
Sbjct: 130 FDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQ 189

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAF----RLFRSWTLSK--TQVALGEDYDGNTDRI 479
           + GC P+   CN+ +   V A + D+A     R+ R        T   L +   G    +
Sbjct: 190 KDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVV 249

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMN 537
             ME          P                  P   +Y  +M   C +     V+ L+ 
Sbjct: 250 DAMEMIGVMLQNGCP------------------PDKISYYTVMSFLCKEKRVEEVRGLLQ 291

Query: 538 EMRT-VGLSPNHISWTILIDACGGSGNVEGALQ 569
            MR   GL P+ +++ +LI      G+ + AL+
Sbjct: 292 RMRNDAGLFPDQVTYNVLIHGLAKHGHADEALE 324



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 53/136 (38%), Gaps = 6/136 (4%)

Query: 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           L N   HD      V + M + GV      +  L+ +   AG    A  +     HL  K
Sbjct: 137 LSNTRLHDP--ARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVL----HLMQK 190

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
                D+   +  V V   A     AL+  E M   GV P+  T++ LI     A  V  
Sbjct: 191 DGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVD 250

Query: 417 AMHLFEEMLQAGCEPN 432
           AM +   MLQ GC P+
Sbjct: 251 AMEMIGVMLQNGCPPD 266


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 163/410 (39%), Gaps = 74/410 (18%)

Query: 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266
           V L IR    V R    F   +  + +   L SA+R     +K   +P++ IC   ++V 
Sbjct: 150 VRLMIRRG--VRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVL 207

Query: 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--------VNAHDL------------- 305
            + G   K+    E +R   V  ++Y +N L+         V+A ++             
Sbjct: 208 VVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDK 267

Query: 306 -------------KFTLEVYKNMQKL----GVMADMASYNILLKACCLAGNTVLAQEIYG 348
                        K   EV   +Q++    G+  D  +YN+L+      G+   A E   
Sbjct: 268 ISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGH---ADEALE 324

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            ++  E K   ++D   YS IV  F        A ++  +M+S G  P+ +T+S++++  
Sbjct: 325 FLRESEGKR-FRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGF 383

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS-----WT--- 460
              G ++QA  + + M +  C+PN+     LL    +  +   A+ L        WT   
Sbjct: 384 CRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSD 443

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
           ++ + V  G   +G          K K+S       +             F PTT   N+
Sbjct: 444 ITYSVVMHGFRREG----------KLKESCDVVVQMLQK----------GFFPTTVEINL 483

Query: 521 LMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           L+ A C D    +A   M + ++ G + N +++T +I      G++E AL
Sbjct: 484 LIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESAL 533



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 27/213 (12%)

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           +  ++ + ++ +    A +V   M+  GV   T  ++ L+ + + AG +  AM +   M 
Sbjct: 130 FDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQ 189

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAF----RLFRSWTLSK--TQVALGEDYDGNTDRI 479
           + GC P+   CN+ +   V A + D+A     R+ R        T   L +   G    +
Sbjct: 190 KDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVV 249

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMN 537
             ME          P                  P   +Y  +M   C +     V+ L+ 
Sbjct: 250 DAMEMIGVMLQNGCP------------------PDKISYYTVMSFLCKEKRVEEVRGLLQ 291

Query: 538 EMRT-VGLSPNHISWTILIDACGGSGNVEGALQ 569
            MR   GL P+ +++ +LI      G+ + AL+
Sbjct: 292 RMRNDAGLFPDQVTYNVLIHGLAKHGHADEALE 324



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 53/136 (38%), Gaps = 6/136 (4%)

Query: 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
           L N   HD      V + M + GV      +  L+ +   AG    A  +     HL  K
Sbjct: 137 LSNTRLHDP--ARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVL----HLMQK 190

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
                D+   +  V V   A     AL+  E M   GV P+  T++ LI     A  V  
Sbjct: 191 DGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVD 250

Query: 417 AMHLFEEMLQAGCEPN 432
           AM +   MLQ GC P+
Sbjct: 251 AMEMIGVMLQNGCPPD 266


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 112/218 (51%), Gaps = 12/218 (5%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEV 311
           +PN+     +ID     G  +++  +Y+++  +++  +I+ ++SL+N    HD    L+ 
Sbjct: 323 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD---RLDE 379

Query: 312 YKNMQKLGVMAD----MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            K+M +L +  D    + +YN L+K  C A       E++ E+      G    +  TY+
Sbjct: 380 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVG----NTVTYT 435

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           T++  F  A+    A  V + M+S GV P+ +T+S L++   N G VE A+ +FE + ++
Sbjct: 436 TLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRS 495

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
             EP+    NI+++   +A + +  + LF S +L   +
Sbjct: 496 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 533



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 139/310 (44%), Gaps = 24/310 (7%)

Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           I V G+C  GD   + ++ + +    +   + ++N++++   N  ++   L ++  M   
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  ++ +YN L++  C  G    A  +  ++  +E K  +  +V T+S ++  F     
Sbjct: 286 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM--IERK--INPNVVTFSALIDAFVKEGK 341

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A K+ ++M+   + P+  T+SSLIN       +++A H+FE M+   C PN    N 
Sbjct: 342 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 401

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT-NTPNFV 497
           L++   +A + D    LFR   +S+  +       GNT   + + H   Q+   +    V
Sbjct: 402 LIKGFCKAKRVDEGMELFRE--MSQRGLV------GNTVTYTTLIHGFFQARECDNAQIV 453

Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILI 555
                S         P   TY+IL+   C +     AL+    ++   + P+  ++ I+I
Sbjct: 454 FKQMVSD-----GVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMI 508

Query: 556 DACGGSGNVE 565
           +    +G VE
Sbjct: 509 EGMCKAGKVE 518



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 132/299 (44%), Gaps = 32/299 (10%)

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVM 321
           D   + GD +KSR             +I  F+ L++  A   KF L +   + MQ LG+ 
Sbjct: 64  DAVNLFGDMVKSRPFP----------SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGIS 113

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            ++ +Y+IL+   C      LA  +  ++  L  +     D+ T ++++  F        
Sbjct: 114 HNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEP----DIVTLNSLLNGFCHGNRISD 169

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A+ +   M+  G  P++ T+++LI+         +A+ L + M+  GC+P+     I++ 
Sbjct: 170 AVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVN 229

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              +    D A  L +     K +  +   Y+   D + N      +++ +  N      
Sbjct: 230 GLCKRGDIDLALSLLKKMEQGKIEPGV-VIYNTIIDALCNY-----KNVNDALNL----- 278

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILIDA 557
           ++  D +   +P   TYN L++  C +Y R      L+++M    ++PN ++++ LIDA
Sbjct: 279 FTEMDNK-GIRPNVVTYNSLIRCLC-NYGRWSDASRLLSDMIERKINPNVVTFSALIDA 335



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 132/311 (42%), Gaps = 26/311 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EV 311
           PN+    ++I      G +  +  +  D+  + +  N+  F++L++    + K     ++
Sbjct: 289 PNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 348

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK---LDVFTYST 368
           Y  M K  +  D+ +Y+ L+   C+        +   E KH+    + K    +V TY+T
Sbjct: 349 YDEMIKRSIDPDIFTYSSLINGFCM-------HDRLDEAKHMFELMISKDCFPNVVTYNT 401

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++K F  AK     +++  +M   G+  NT+T+++LI+    A   + A  +F++M+  G
Sbjct: 402 LIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG 461

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
             P+    +ILL       + + A  +F     SK +  +   Y  N   I  M    K 
Sbjct: 462 VLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDI---YTYNI-MIEGMCKAGK- 516

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR--VKALMNEMRTVGLSP 546
            + +  +      + S   +   KP   TY  +M   C    +    AL  EM+  G  P
Sbjct: 517 -VEDGWDL-----FCSLSLK-GVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLP 569

Query: 547 NHISWTILIDA 557
           +  ++  LI A
Sbjct: 570 DSGTYNTLIRA 580


>gi|410110149|gb|AFV61154.1| pentatricopeptide repeat-containing protein 123, partial
           [Xeroaloysia ovatifolia]
          Length = 431

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 124/252 (49%), Gaps = 6/252 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 43  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 102

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  V  N   + +L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 103 SLISEMRTAGVMPNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 162

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 163 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 218

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +A + DRA  
Sbjct: 219 VQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAM 278

Query: 455 LFRSWTLSKTQV 466
           LF+    S  ++
Sbjct: 279 LFQKLRSSGVEI 290



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 132/327 (40%), Gaps = 55/327 (16%)

Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH- 303
           D  ++   SP+ Y   T+I   G  G +  + +  + +    V  ++ ++++L+ ++   
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 304 -DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
            D    + ++  +++ G   D+ +YN ++      G   L +E    +  +   GV+  +
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVF---GKAKLFREARSLISEMRTAGVMP-N 116

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
             +Y+T++ ++ + K +  AL V  +M       +  T + +I+     G+ ++A  LF 
Sbjct: 117 TASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 176

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
            M + G EPN    N LL+   +A  F  A  LFR                         
Sbjct: 177 GMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFR------------------------- 211

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMR 540
                  +    N V N                 TYN +M       ++ +   L+ EM+
Sbjct: 212 -------LMQRKNIVQN---------------VVTYNSMMMIYGKTLEHEKANNLIQEMQ 249

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGA 567
             G+ PN I+++ +I   G +G ++ A
Sbjct: 250 NRGIEPNSITYSTIISIWGKAGKLDRA 276



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/250 (20%), Positives = 117/250 (46%), Gaps = 11/250 (4%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +R A ++P     +   +  + + +  + AL  +   ++     ++  C  +IDV G  G
Sbjct: 108 MRTAGVMPNT-ASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLG 166

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN 328
              ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ+  ++ ++ +YN
Sbjct: 167 MAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYN 226

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++  A     A  + + 
Sbjct: 227 SMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKAGKLDRAAMLFQK 282

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           + S+GV  + + + ++I A   AGLV  A  L  E+      P     +IL      A +
Sbjct: 283 LRSSGVEIDQVLYQTMIVAYEKAGLVAHAKRLLHELKSPDNIPRDTAIHIL----AGAGR 338

Query: 449 FDRAFRLFRS 458
            + A  +FR 
Sbjct: 339 IEEATYVFRQ 348


>gi|255661172|gb|ACU25755.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 426

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  VT N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 275

Query: 455 LFR 457
           LF+
Sbjct: 276 LFQ 278



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGVTPNT ++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRA 273



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 106/231 (45%), Gaps = 6/231 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  FGK+    +AL      ++     ++ +   +I++     DY K+ +I+  L+
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
               T ++  +N+++NV   A   +    +   M+  GV  + ASY+ LL         +
Sbjct: 72  RSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  ++ E++ ++      LD+ T + ++ V+      + A K+   M   G+ PN +++
Sbjct: 132 EALSVFAEMREIKC----LLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           ++L+    +A L  +A+HLF  M +   E N    N ++    +  + ++A
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 91/186 (48%), Gaps = 6/186 (3%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  +  ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++   
Sbjct: 212 RKNIEQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKV 267

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S+GV  + + + ++I A   +GLV  A  L  E+ +    P     
Sbjct: 268 GKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERSGLVAHAKRLLHELKRPDNIPRDIAI 327

Query: 437 NILLQA 442
           +IL  A
Sbjct: 328 HILAGA 333


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 171/413 (41%), Gaps = 53/413 (12%)

Query: 197 IVQLCVNKPDVNLAIRYACIVPRADILFC----------NFVREFGKKRDLVSALRAYDA 246
           ++  CV + +V  A+R      + D++ C          + ++ +  + +L SAL   + 
Sbjct: 116 VITACVKEGNVAEALRL-----KDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNE 170

Query: 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHD 304
             +    PN      +ID C   G+  K+   Y +++++ +  ++Y  NS++   +    
Sbjct: 171 ISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQS 230

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            +    ++ +  + G +A++ ++N LL   C  G    A  ++ EV    AKG+   +V 
Sbjct: 231 WQNAFTMFNDALESG-LANVFTFNTLLSWLCKEGKMNEACNLWDEVI---AKGI-SPNVV 285

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+ I+           A KV ++ML  G TPN +T++ L++     G +E A  +F  M
Sbjct: 286 SYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRM 345

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--------LSKTQVALGEDYDGNT 476
             A   P      I+++   +A +      LF  +         +    +  G   +GN 
Sbjct: 346 KDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNI 405

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFD------------------KRFSFKPTTTTY 518
           +  SN+ +++   +  TP+ V  ++ S  D                  KR   K     Y
Sbjct: 406 NLASNV-YREMCEVGITPSTV--TYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAY 462

Query: 519 NILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             L+   C   D      L+NE+R  GLSPN   +  +I       NVE A+ 
Sbjct: 463 GTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAID 515



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 148/358 (41%), Gaps = 76/358 (21%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           ++I  C   G+  ++  + +D+ +   ++N+ V  SLM       +L+  L +   + + 
Sbjct: 115 SVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISES 174

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G++ +  +Y++L+  CC  GN   A E Y E+K    KG+ +  V++ ++I++ +   + 
Sbjct: 175 GLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMK---TKGI-RSSVYSLNSILEGYLKCQS 230

Query: 379 WQMALKVKEDMLSAG----------------------------------VTPNTITWSSL 404
           WQ A  +  D L +G                                  ++PN ++++++
Sbjct: 231 WQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNI 290

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWTL 461
           I        +  A  +++EML  G  PN+    IL+    +    + AF +F   +   +
Sbjct: 291 ILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANI 350

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS--FKPTTTTYN 519
             T   LG    G      + E +D                  F+K  S  F PT   YN
Sbjct: 351 LPTDTTLGIIIKGLCKAGRSFEGRD-----------------LFNKFVSQGFVPTCMPYN 393

Query: 520 ILMKA--------CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            ++            ++ YR      EM  VG++P+ +++T LID      N++ AL+
Sbjct: 394 TIIDGFIKEGNINLASNVYR------EMCEVGITPSTVTYTSLIDGFCKGNNIDLALK 445



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 126/256 (49%), Gaps = 17/256 (6%)

Query: 197 IVQLCVNKPDVNLA---IRYAC---IVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250
           I+   + + ++NLA    R  C   I P + + + + +  F K  ++  AL+  +  K+ 
Sbjct: 395 IIDGFIKEGNINLASNVYREMCEVGITP-STVTYTSLIDGFCKGNNIDLALKLLNDMKRK 453

Query: 251 LSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLK 306
               ++    T+ID  G C   D   +  +  +LR   ++ N +++NS++    N ++++
Sbjct: 454 GLKMDIKAYGTLID--GFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVE 511

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             +++YK M   G+  D+ +Y  L+     +G  + A +I+ E   + +KG+L  D   +
Sbjct: 512 EAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTE---MLSKGILP-DDRAH 567

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + ++    +   ++ A K+ EDM    + P+ + +++LI      G +++A  L +EML 
Sbjct: 568 TVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLD 627

Query: 427 AGCEPNSQCCNILLQA 442
            G  P++   +IL+  
Sbjct: 628 RGLVPDNITYDILVNG 643



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 156/356 (43%), Gaps = 30/356 (8%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMK 274
            P A + F   +  + KK D+ +A   +   K     P       II   G+C  G   +
Sbjct: 316 TPNA-VTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIK--GLCKAGRSFE 372

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
            R ++    SQ        +N++++  +   ++     VY+ M ++G+     +Y  L+ 
Sbjct: 373 GRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLID 432

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C   N  LA ++  ++K    KG LK+D+  Y T++  F   +  + A ++  ++  A
Sbjct: 433 GFCKGNNIDLALKLLNDMKR---KG-LKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGA 488

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G++PN   ++S+I    N   VE+A+ L+++M+  G   + +    L+   +      ++
Sbjct: 489 GLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLL------KS 542

Query: 453 FRLFRSWTLSKTQVALG--EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
            RL  +  +    ++ G   D   +T  I+ + +K +    N    + + +        +
Sbjct: 543 GRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQ--FENARKILEDMNGK------N 594

Query: 511 FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA-CGGSGN 563
             P+   YN L+     +    +A  L +EM   GL P++I++ IL++    G GN
Sbjct: 595 MIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKGDGN 650



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 126/325 (38%), Gaps = 77/325 (23%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E++  M  +GV  D  + +++L+AC   GN + A++ + + K   A+GV +LD   YS  
Sbjct: 26  ELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQHFLQAK---ARGV-ELDQEAYSIF 81

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML---- 425
           V +         AL +  +M +AG  P   T++S+I AC   G V +A+ L ++M+    
Sbjct: 82  VHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGK 141

Query: 426 -------------------------------QAGCEPNSQCCNILLQACVEACQFDRAFR 454
                                          ++G  PN    ++L+  C +    ++AF 
Sbjct: 142 SMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFE 201

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK-QSITNTPNFVPNSHYSSFDKRFSFK- 512
            +      KT+      Y  N    S +E   K QS  N      ++  S     F+F  
Sbjct: 202 FYSEM---KTKGIRSSVYSLN----SILEGYLKCQSWQNAFTMFNDALESGLANVFTFNT 254

Query: 513 ---------------------------PTTTTY-NILMKACCTDYYRVK-ALMNEMRTVG 543
                                      P   +Y NI++  C  D       +  EM   G
Sbjct: 255 LLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNG 314

Query: 544 LSPNHISWTILIDACGGSGNVEGAL 568
            +PN +++TIL+D     G++E A 
Sbjct: 315 FTPNAVTFTILMDGYFKKGDIENAF 339


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 108/269 (40%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+ + + G  A +  +NIL+   C  G+  +AQ ++  +     K  L+  V 
Sbjct: 123 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI----TKWGLRPSVV 178

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  ML++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 179 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEM 238

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  +++   LS+                     
Sbjct: 239 LVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKR-MLSQ--------------------- 276

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
                                    S  P   TYN L+   C   D  +   L++EM   
Sbjct: 277 -------------------------SLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMK 311

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ I++T LID C   G+++ A + R
Sbjct: 312 GLKPDKITYTTLIDGCCKEGDLDTAFEHR 340



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 127/294 (43%), Gaps = 24/294 (8%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++++++ +    +  ++  +N+LMN  +   DL     +   M   GV  D  +Y
Sbjct: 156 GDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTY 215

Query: 328 NILLKACCLAGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           ++L+   C       A E++ E  VK L   GV      T++T++          +A+++
Sbjct: 216 SVLINGLCKESKMDDANELFDEMLVKGLVPNGV------TFTTLIDGHCKKGRVDLAMEI 269

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + MLS  + P+ IT+++LI      G ++QA  L +EM+  G +P+      L+  C +
Sbjct: 270 YKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCK 329

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
               D AF   +       ++    D    T  IS +  + +         V        
Sbjct: 330 EGDLDTAFEHRKRMIQENIRL----DDVAYTALISGLCQEGRS--------VDAEKMLRE 377

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
                 KP T TY +++   C   D ++   L+ EM+  G  P+ +++ +L++ 
Sbjct: 378 MLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMNG 431



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +  IY+ + SQ++  ++  +N+L+       DLK   
Sbjct: 245 PNGVTFTTLID--GHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAN 302

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   M   G+  D  +Y  L+  CC  G+   A E     K +  + + +LD   Y+ +
Sbjct: 303 DLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFE---HRKRMIQENI-RLDDVAYTAL 358

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +MLS G+ P+T T++ +IN     G V +   L +EM + G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGH 418

Query: 430 EPNSQCCNILLQA 442
            P+    N+L+  
Sbjct: 419 VPSVVTYNVLMNG 431


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 130/294 (44%), Gaps = 33/294 (11%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           ++  +N++M+    +  ++  L ++  M++LG   +  S+N ++   C       A +++
Sbjct: 114 DVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVF 173

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            E   +EA+ +   D ++Y  ++   A A     A K+   ML +G+TP+ +T++ +I+ 
Sbjct: 174 HE---MEARDIPP-DSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHG 229

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
              A  +++A+ LF+ M   GC P+    NIL+ A  +  + D AFRL +  T     V 
Sbjct: 230 MCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMT-DDGHVP 288

Query: 468 LGEDYDG------NTDRISNMEH--KDKQSITNTPNFVP-NSHYSSFDKRFSFK------ 512
               Y        +  R+ +  H  +D       P  V  N+      K    K      
Sbjct: 289 DVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVL 348

Query: 513 ---------PTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILI 555
                    P   TYN L+   C      R + L+++M   GL+PN +++T L+
Sbjct: 349 DAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALV 402



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 129/294 (43%), Gaps = 24/294 (8%)

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +NV+ + + +  L++    A  L    ++++ +   GV     +Y  L+   C+A +
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+E++ ++     +G     V TY+ I+         + A  + + M+  G  P+ +
Sbjct: 61  FDDARELFADMNR---RGCPPSPV-TYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVV 116

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++++++    +G VE+A+ LF EM + GC PN +  N ++    +  + D+A ++F   
Sbjct: 117 TYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM 176

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF--SFKPTTTT 517
                     E  D   D  S     D  +         N  Y  F +       P+  T
Sbjct: 177 ----------EARDIPPDSWSYGILIDGLAKAGK----LNEAYKLFRRMLDSGITPSAVT 222

Query: 518 YNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           YN+++   C  Y   +A  L   MR+ G  P+  ++ ILIDA    G ++ A +
Sbjct: 223 YNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFR 276



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 6/199 (3%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +R + ED+  +     +   N+L++    A  +K   EV   M   G   D+ +YN L+ 
Sbjct: 309 ARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVH 368

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C AG T  A+E+  +   + A+G L  +V TY+ +V     A     A  V   M S+
Sbjct: 369 GHCRAGQTERARELLSD---MVARG-LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS 424

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G  PN  T+++LI    +AG V+  + LF EM+ AG  P+      L     ++ +  RA
Sbjct: 425 GCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARA 484

Query: 453 FRLFRSWTLSKTQVALGED 471
             + R    S    A G++
Sbjct: 485 LEILREGRESLRSEAWGDE 503



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 35/225 (15%)

Query: 267 GICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMA 322
           G+C  Y    A+  ++ +RS+    + + FN L++ +    K      + K M   G + 
Sbjct: 229 GMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVP 288

Query: 323 DMASYNILLKACCLAGN------------------TVLAQE--IYGEVKH---LEAKGVL 359
           D+ +Y+ L+   C                      TV+ Q   I+G  K     EA+ VL
Sbjct: 289 DVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVL 348

Query: 360 KL--------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
                     DV TY+T+V     A   + A ++  DM++ G+ PN +T+++L++    A
Sbjct: 349 DAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKA 408

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             + +A  +F +M  +GC PN      L+     A Q D   +LF
Sbjct: 409 NRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLF 453



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 4/151 (2%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            ++  ++S     N++ + +L+    +A  +   L+++  M   G+  D   Y  L    
Sbjct: 416 GVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAEL 475

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C +G +  A EI  E +          +V+ ++  V    DA   +MAL    DM+  G 
Sbjct: 476 CKSGRSARALEILREGRESLRSEAWGDEVYRFA--VDGLLDAGKMEMALGFVRDMVRGGQ 533

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEML 425
            P     +SL+     +G   +A  + EE++
Sbjct: 534 LPAPERCASLVAGLCKSGQGGEARAVLEEIM 564


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 151/354 (42%), Gaps = 32/354 (9%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSS---PNMYICRTIIDVCGICGDYMKSRAIYE 280
           F   + + GK  D+V   R  D   K L+S   P++    T+I++    G   +++ I  
Sbjct: 170 FTTLLIQLGK-FDMVDLAR--DMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMS 226

Query: 281 DLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +   +   N + + SL+  +   H+L     ++  M K G   +  +Y+ L+   C  G
Sbjct: 227 HIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEG 286

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A ++  E+     KG+ +  V+TY+  +    DA     A+++   M   G  PN 
Sbjct: 287 RLEEAMDMLEEMVQ---KGI-EPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNI 342

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL-QACVEACQFDRAFRLFR 457
            T+++LI+  +  G  E A+ L+ +ML  G  P +   N L+ Q CVE  +F+ AF +F+
Sbjct: 343 QTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEG-RFETAFTIFK 401

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK--RFSFKPTT 515
            W LS   +   + Y+        M    K  +              FDK  +    P  
Sbjct: 402 -WMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI-------------FDKMLKAGSSPNV 447

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            TYN L+   C   +      L+  M+  GL P+  ++T LI      G +E A
Sbjct: 448 ITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHA 501



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 129/298 (43%), Gaps = 43/298 (14%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           D++  + ++  M K G   ++ +YN L+   C  GN   A  +   ++ ++  G LK D 
Sbjct: 427 DIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRL---LEIMKGNG-LKPDA 482

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
           +TY+ ++  F+     + A  +   M+  G++PN +T++++I+   N   V+ A+ LF +
Sbjct: 483 WTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWK 542

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRA----FRLFRSWTL----SKTQVALGEDYDGN 475
           M+++G  P+SQ  N+++    +      A     ++ +   L    + T    G   +G 
Sbjct: 543 MVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGR 602

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSH-YSSFD---------------------KRFSFKP 513
           T     + H+ ++      N+ PN + YSS                         +  +P
Sbjct: 603 TGLAFKIFHEMEKR-----NYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEP 657

Query: 514 TTTTYNILMKACCTDY--YRVKALMNEMRTVGLSPN-HISWTILIDACGGSGNVEGAL 568
              TY  L+K  C +   Y    L+  M+  GL P+  I   +LI  C     VE AL
Sbjct: 658 NVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNL-KVESAL 714



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 121/295 (41%), Gaps = 26/295 (8%)

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEV--YKNMQKLGVMADMASYNILLKACCLAGN 339
           ++ +    NI  F +L++  + D KF + +  Y  M   G++    +YN L+   C+ G 
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGR 392

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  I+   K + + G L     TY+ I+K F      Q A+ + + ML AG +PN I
Sbjct: 393 FETAFTIF---KWMLSHGSLP-STQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVI 448

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+++LI      G +  AM L E M   G +P++     L+       + + A  LF   
Sbjct: 449 TYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGM 508

Query: 460 T---LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
               +S   V     Y    D   N+   D  ++      V + +           P++ 
Sbjct: 509 MEHGISPNHVT----YTAIIDGYFNLAKVD-DALALFWKMVESGNL----------PSSQ 553

Query: 517 TYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           TYN+++            +    +M   GL PN I++T  ID    +G    A +
Sbjct: 554 TYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFK 608


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 32/286 (11%)

Query: 203 NKPDV---NLAIRYACIVPRAD--ILFCNFVREFGKK----------RDLVSALRAYDAS 247
           +KPDV   N+ I   C   R D  I F N +  +G +          R + S  R  DA 
Sbjct: 282 SKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAE 341

Query: 248 K------KHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN 299
           K      +   SP++     +I+   +C   +  RAI   E +     T N   +N L++
Sbjct: 342 KLLSDMLRKGCSPSVVTFNILINF--LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLH 399

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
               + K    +E    M   G   D+ +YN LL A C  G   +A EI   +  L +KG
Sbjct: 400 GFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEI---LNQLSSKG 456

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
              + + TY+T++   +     + A+K+ ++M   G+ P+ IT+SSL++  +  G V++A
Sbjct: 457 CSPV-LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEA 515

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           +  F ++   G  PN+   N ++    ++ Q DRA   F ++ +SK
Sbjct: 516 IKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID-FLAYMISK 560



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 108/263 (41%), Gaps = 53/263 (20%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +++   M+  G   D+ +YN+L+   C  G      E    + ++ + G  + +V T++ 
Sbjct: 271 MKLLDEMRNKGSKPDVVTYNVLINGICKEGRL---DEAIKFLNNMPSYGC-QPNVITHNI 326

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I++       W  A K+  DML  G +P+ +T++ LIN     GL+ +A+ + E+M   G
Sbjct: 327 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 386

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           C PNS   N LL    +  + DRA                             +E+ D  
Sbjct: 387 CTPNSLSYNPLLHGFCKEKKMDRA-----------------------------IEYLDI- 416

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
                   V    Y          P   TYN L+ A C D     A  ++N++ + G SP
Sbjct: 417 -------MVSRGCY----------PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSP 459

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
             I++  +ID     G  E A++
Sbjct: 460 VLITYNTVIDGLSKVGKTERAIK 482



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 108/248 (43%), Gaps = 56/248 (22%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + +++ G + D+ +YN+L+   C +G      EI   ++ L+   V   DV TY+TI+
Sbjct: 171 VMEILEQSGAVPDVITYNVLISGYCKSG------EIDNALQVLDRMNVAP-DVVTYNTIL 223

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +   D+   + A++V +  L     P+ IT++ LI A      V QAM L +EM   G +
Sbjct: 224 RTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSK 283

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P+    N+L+    +  + D A +                                   +
Sbjct: 284 PDVVTYNVLINGICKEGRLDEAIKF----------------------------------L 309

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNH 548
            N P+             +  +P   T+NI++++ C+   +   + L+++M   G SP+ 
Sbjct: 310 NNMPS-------------YGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSV 356

Query: 549 ISWTILID 556
           +++ ILI+
Sbjct: 357 VTFNILIN 364



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 13/208 (6%)

Query: 242 RAYDASKK---HLSSPNMYICRTIIDVCGICGDYMKSRAI-YEDLR-SQNVTLNIYVFNS 296
           RA D  +K   H  +PN      ++   G C +    RAI Y D+  S+    +I  +N+
Sbjct: 374 RAIDILEKMPMHGCTPNSLSYNPLLH--GFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNT 431

Query: 297 LMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           L+     D K    +E+   +   G    + +YN ++      G T  A ++  E++   
Sbjct: 432 LLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRR-- 489

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            KG LK D+ TYS++V   +       A+K   D+   G+ PN IT++S++     +   
Sbjct: 490 -KG-LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQT 547

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           ++A+     M+   C+P      IL++ 
Sbjct: 548 DRAIDFLAYMISKRCKPTEATYTILIEG 575


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 11/257 (4%)

Query: 208 NLAIRYACIVPRA----DILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTI 262
           NLAI     V R+    DI+  N  +    +  +L  A+  +D    H   P+++    +
Sbjct: 310 NLAIELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAM 369

Query: 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGV 320
           I V G CG   K+  ++ DL S+    +   +NS +   A +  ++   ++ + M K+G 
Sbjct: 370 ISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGF 429

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             D  +YN ++      G   LA ++Y ++K          DV TY+ ++         +
Sbjct: 430 GKDEMTYNTMIHMYGKQGQNDLALQLYRDMK----SSGRNPDVITYTVLIDSLGKTNKIE 485

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A  +  +ML+ GV P   T+S+LI   A AG   +A   F+ ML++G  P+    +++L
Sbjct: 486 EAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVML 545

Query: 441 QACVEACQFDRAFRLFR 457
              +   +  RA   ++
Sbjct: 546 DIHLRFNEPKRAMTFYK 562



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 137/351 (39%), Gaps = 65/351 (18%)

Query: 279  YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCL 336
            Y + R    T +  +F +L+     +  FT   +V+ +M+  G+ A    Y  ++   C 
Sbjct: 697  YSNSRELGFTGSFTMFEALIQCCLENELFTEASQVFSDMRFCGIKASECLYQSMMLLYCK 756

Query: 337  AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
             G    A  +   +   E  G +  ++  Y  +++ +   K WQ A  V  +M  + +T 
Sbjct: 757  MGFPETAHHL---IDLTETDGTVLNNISVYVDVIEAYGRLKLWQKAESVAGNMRQSCITV 813

Query: 397  NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            N   W++LI A A +G  E+A  +F  M++ G  P     N LLQA +   + +  + + 
Sbjct: 814  NRKVWNALIEAYAASGCYERARAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVV 873

Query: 457  R-----SWTLSKTQVALGED---YDGNTDRISNMEH----------------------KD 486
            +      + +SK+ + L  D     GN   +  + H                      + 
Sbjct: 874  QELQDIGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRG 933

Query: 487  KQ--------SITNTPNFVPN--------SHYSSFD------------KRFSFKPTTTTY 518
            KQ        S      F P+          Y + D            K    +P   TY
Sbjct: 934  KQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTY 993

Query: 519  NILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            NIL+   C D+   +   LM+EMRTVGL P   ++  L+ + G    VE A
Sbjct: 994  NILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQA 1044



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 153/379 (40%), Gaps = 68/379 (17%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASK----KHLSSPNMYICRTIIDVCGIC---------- 269
           FC  V+  G++    S  RA++  +    +H  SPN  +  TI+ V G            
Sbjct: 190 FCFVVKSVGQE----SWHRAFEVYEWLNLRHWYSPNARMLSTILAVLGKANQEPLAVEVF 245

Query: 270 ------------------------GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305
                                   G + K + +++ +R +    ++  FN+L+N      
Sbjct: 246 TRAEPSVENTVKVYNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAG 305

Query: 306 KFT----LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV--KHLEAKGVL 359
           + T    +E+   +++ G+  D+ +YN L+ AC  A N   A  ++ ++   H E     
Sbjct: 306 EMTPNLAIELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEP---- 361

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             D++TY+ ++ V+        A ++  D+ S G  P+ ++++S + A A  G VE+   
Sbjct: 362 --DLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKD 419

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           + EEM++ G   +    N ++    +  Q D A +L+R    S            N D I
Sbjct: 420 ICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGR----------NPDVI 469

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMN 537
           +     D    TN             +     KPT  TY+ L+         V+A    +
Sbjct: 470 TYTVLIDSLGKTNKIEEAAGMMSEMLNT--GVKPTLRTYSALICGYAKAGKPVEAEETFD 527

Query: 538 EMRTVGLSPNHISWTILID 556
            M   G  P+ +++++++D
Sbjct: 528 CMLRSGTRPDQLAYSVMLD 546



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/309 (18%), Positives = 131/309 (42%), Gaps = 16/309 (5%)

Query: 262  IIDVCGICGDYMKSRAIYEDLRSQNV--TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG 319
            ++D     G+  + + IY  +++     ++++Y   + +      ++    +   M++ G
Sbjct: 891  MLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAG 950

Query: 320  VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
               D++ +N +LK      +     +IY  +K    +  L+ D  TY+ ++ ++      
Sbjct: 951  FKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIK----EDGLEPDEDTYNILIVMYCRDHRP 1006

Query: 380  QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
            +  L + ++M + G+ P   T+ SL+ +     LVEQA  LFEE+   GC+ +    +I+
Sbjct: 1007 KEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIM 1066

Query: 440  LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
            ++    +    +A RLF        +  +   +       S+ + ++ + +         
Sbjct: 1067 MKIYRNSGSHSKAQRLFSMMKDEGVEPTIATMHLLMVSYGSSGQPQEAEKVL-------- 1118

Query: 500  SHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
            S+    D   S  P ++  +  ++    DY      + +++  GL P+H  WT  I A  
Sbjct: 1119 SNLKETDANLSTLPYSSVIDAYVRN--GDYNAGIQKLKQVKEEGLEPDHRIWTCFIRAAS 1176

Query: 560  GSGNVEGAL 568
             S +   A+
Sbjct: 1177 LSQHTSEAI 1185



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 92/212 (43%), Gaps = 6/212 (2%)

Query: 231  FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
            F +  ++    + Y   K     P+M++ R +  +           A+  ++       +
Sbjct: 895  FARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPD 954

Query: 291  IYVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            + ++NS+  M V   D + T ++Y+ +++ G+  D  +YNIL+   C          +  
Sbjct: 955  LSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMD 1014

Query: 349  EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
            E++ +  +   KLD  TY ++V  F   +  + A ++ E++ S G   +   +  ++   
Sbjct: 1015 EMRTVGLEP--KLD--TYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIY 1070

Query: 409  ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
             N+G   +A  LF  M   G EP     ++L+
Sbjct: 1071 RNSGSHSKAQRLFSMMKDEGVEPTIATMHLLM 1102


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 144/321 (44%), Gaps = 20/321 (6%)

Query: 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE--FRLPV 188
           CV  ++ K  EL  A  E      F + +    R ++ GEVEM +   + L +  F L +
Sbjct: 217 CVEVIVDKYGELCSAMRE----QPFSVYEFVMNRFMNKGEVEMGLRFHKALVQGGFGLDI 272

Query: 189 KELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADIL-FCNFVREFGKKRDLVSALRA 243
              ++  + + +   + D+ +A  Y  +V    P+ +++ F   +  + K+ +L  A   
Sbjct: 273 ITCNKILKGIWM---QNDIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVL 329

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VN 301
           +D    +  +P++ +   +ID     G     + +      + + L++  F+S M+  V 
Sbjct: 330 FDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVK 389

Query: 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
             DL   +++YK M   G+  ++ S +IL+K  C  G  + A  ++ ++  L      + 
Sbjct: 390 IGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLG----FEP 445

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
            + TYS ++  F  +   +    + EDM+     P+TI +S LIN     GLV  A+  F
Sbjct: 446 SILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFF 505

Query: 422 EEMLQAGCEPNSQCCNILLQA 442
            + +  G  PN    N LL +
Sbjct: 506 FQAVNRGLSPNVFTLNTLLDS 526



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 145/361 (40%), Gaps = 44/361 (12%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           +  F K  +L      Y+   K    P+  +   +I+  G+C   +   A+    ++ N 
Sbjct: 454 IAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLIN--GLCKQGLVGDALRFFFQAVNR 511

Query: 288 TL--NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            L  N++  N+L++       +   ++VY  M  L + AD  +Y IL+K     G    A
Sbjct: 512 GLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEA 571

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
             ++ ++     K   K DV TY T++      K     L + + M    V P+   ++ 
Sbjct: 572 LMLFFQM----LKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNV 627

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--- 460
           LIN  +  G +E A+ LF  +++ G +P+    N ++       + D A +LF   T   
Sbjct: 628 LINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQ 687

Query: 461 LSKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
           L    +      D      R+ +      + +   P                 +P   TY
Sbjct: 688 LRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGP-----------------EPNLVTY 730

Query: 519 NILMKACCTDYYRVKALM-------NEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
           + L+      Y++ +++M       NEM    ++PN +S++ILID     G ++ A  C 
Sbjct: 731 SCLIHG----YFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEA-SCA 785

Query: 572 F 572
           F
Sbjct: 786 F 786



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 120/298 (40%), Gaps = 42/298 (14%)

Query: 290 NIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N+  F++L++    +  L     ++  M   GV  D+  Y+IL+     AG     Q + 
Sbjct: 306 NVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLL 365

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             +  L+ KG+ KLDV  +S+ +  +         +++ + ML+ G++PN ++ S LI  
Sbjct: 366 --LVALD-KGI-KLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKG 421

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
               G + +A  LF ++L+ G EP+    + L+    ++      F L+           
Sbjct: 422 FCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYE---------- 471

Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK-------PTTTTYNI 520
                    D I      D    +   N +          RF F+       P   T N 
Sbjct: 472 ---------DMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNT 522

Query: 521 LMKACCTDYYRVKALMNEMRT------VGLSPNHISWTILIDACGGSGNVEGALQCRF 572
           L+ + C    R+K ++  M+       + +  + +++TILI      G V+ AL   F
Sbjct: 523 LLDSFC----RLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFF 576



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/339 (19%), Positives = 139/339 (41%), Gaps = 42/339 (12%)

Query: 128 RIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP 187
           R+ C+VG +K    +G+  ++    +   L+K   Q     G V+         E   L 
Sbjct: 529 RLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQ----FGRVD---------EALMLF 575

Query: 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247
            + L ++F        KPDV              I +C  +    K +   + L  +D  
Sbjct: 576 FQMLKKDF--------KPDV--------------ITYCTLIDGLCKLKKSSAGLCIFDFM 613

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDL 305
            K+  +P++ I   +I++    G    +  ++  +  +    +++ FN+++    N   L
Sbjct: 614 CKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRL 673

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
              ++++  M    +  +  ++ IL+ A C  G    A  ++   K LE     + ++ T
Sbjct: 674 DDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFS--KMLEEGP--EPNLVT 729

Query: 366 YSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           YS ++   F      +  LK+  +ML   + PN +++S LI+     GL+++A   F   
Sbjct: 730 YSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCA 789

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           L     P+     IL++   +  +   A  L+ +  L++
Sbjct: 790 LDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNR 828


>gi|359490014|ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Vitis vinifera]
          Length = 494

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 143/337 (42%), Gaps = 47/337 (13%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           T+I+  G  G  +++ AI+ ++    + L++ V+N ++   +    L+   +V   M  L
Sbjct: 63  TVIEALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDAL 122

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  + A+Y  L+     AG       + GE+    ++     D F YS ++ V+ D   
Sbjct: 123 GIGRNRATYEALVDYYGRAGRLNDVWAVIGEM----SRDGFGPDSFVYSKVIGVYRDNGM 178

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           W+ A+++  ++   GV+ +   ++S+I+     G + +A+ +FE+M + G +P+    N 
Sbjct: 179 WKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNS 238

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVA---------------LGED--YDGNTDRISN 481
           L+Q   +A    +A  LF     SK Q                 LGE   +D       N
Sbjct: 239 LIQWHCKAGDVGKALELF-----SKMQEEGLYPDPKIFITIISRLGEQGKWDVIKRNFEN 293

Query: 482 MEHKDKQSITNTPNFVPN--SHYSSFD---------KRFSFKPTTTTYNILMKA-----C 525
           M+ +  Q        + +    Y  F          K    +P+ + + +L  A      
Sbjct: 294 MKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANAYAQQGL 353

Query: 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
           C    +V  LM    T G+ PN I   +LI+A G +G
Sbjct: 354 CEQTVKVLQLME---TEGIEPNLIMLNMLINAFGIAG 387



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 103/233 (44%), Gaps = 35/233 (15%)

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNM 315
           I  +IID  G CG+  ++  ++E ++ + V  +I  +NSL+  +  A D+   LE++  M
Sbjct: 200 IYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKM 259

Query: 316 QKLGVMADMASYNILLKACCLAGN----------------------TVLAQEIYGE---- 349
           Q+ G+  D   +  ++      G                         +  +IYG+    
Sbjct: 260 QEEGLYPDPKIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRF 319

Query: 350 ------VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
                 +  L+++G+ +     +  +   +A     +  +KV + M + G+ PN I  + 
Sbjct: 320 QGPEECISALKSEGI-QPSASMFCVLANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNM 378

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           LINA   AG   +A+ ++  +   G  P+    + L++AC+ A +FD+   ++
Sbjct: 379 LINAFGIAGRHLEALSVYHHIKDTGISPDVVTYSTLMKACIRARKFDKVPEIY 431



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 30/268 (11%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           D+   +++   M+ LG    + SY  +++A    G T+ A+ I+ E+ HL     LKLD+
Sbjct: 38  DVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLG----LKLDL 93

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
             Y+ +++        ++A KV  +M + G+  N  T+ +L++    AG +     +  E
Sbjct: 94  RVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGE 153

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M + G  P+S   + ++    +   + +A  + R   + +  V+L         RI N  
Sbjct: 154 MSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVRE--IREMGVSL-------DKRIYN-- 202

Query: 484 HKDKQSITNTPNFVPNSHYSS----FDK--RFSFKPTTTTYNILMKACCT--DYYRVKAL 535
                SI +T  F      S     F+K      KP   T+N L++  C   D  +   L
Sbjct: 203 -----SIIDT--FGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALEL 255

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGN 563
            ++M+  GL P+   +  +I   G  G 
Sbjct: 256 FSKMQEEGLYPDPKIFITIISRLGEQGK 283



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 104/227 (45%), Gaps = 7/227 (3%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           + DI+  N  ++   K  D+  AL  +   ++    P+  I  TII   G  G +   + 
Sbjct: 230 KPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKWDVIKR 289

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACC 335
            +E+++ +    +  ++  L+++     +F    E    ++  G+    + + +L  A  
Sbjct: 290 NFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANAYA 349

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G   L ++    ++ +E +G+ + ++   + ++  F  A     AL V   +   G++
Sbjct: 350 QQG---LCEQTVKVLQLMETEGI-EPNLIMLNMLINAFGIAGRHLEALSVYHHIKDTGIS 405

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           P+ +T+S+L+ AC  A   ++   ++EEM  AGC P+ +   +L  A
Sbjct: 406 PDVVTYSTLMKACIRARKFDKVPEIYEEMESAGCTPDRKAREMLQTA 452


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 152/340 (44%), Gaps = 20/340 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           ++F   +    K R +  AL  +   +     PN+    ++I      G +  +  +  D
Sbjct: 223 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 282

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  N+  FN+L++    + KF    ++Y +M K  +  D+ +YN L+   C+   
Sbjct: 283 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDR 342

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A++++   + + +K     DV TY+T++K F  +K  +   ++  +M   G+  +T+
Sbjct: 343 LDKAKQMF---EFMVSKDCFP-DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 398

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+++LI    + G  + A  +F++M+  G  P+    +ILL       + ++A  +F   
Sbjct: 399 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD-- 456

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
            + K+++ L  D    T  I  M    K  + +  +      + S   +   KP   TYN
Sbjct: 457 YMQKSEIKL--DIYIYTTMIEGMCKAGK--VDDGWDL-----FCSLSLK-GVKPNVVTYN 506

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
            ++   C+        AL+ +M+  G  PN  ++  LI A
Sbjct: 507 TMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRA 546



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 129/299 (43%), Gaps = 32/299 (10%)

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVM 321
           D  G+ G  +KSR +           +I  FN L++  A   KF   + + + MQ+L ++
Sbjct: 30  DAIGLFGGMVKSRPLP----------SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIV 79

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
             + +YNIL+   C      LA  + G++  L  +      + T S+++  +   K    
Sbjct: 80  HGLYTYNILINCFCRRSQISLALALLGKMMKLGYEP----SIVTLSSLLNGYCHGKRISD 135

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A+ + + M+  G  P+TIT+++LI+         +A+ L + M+Q GC+PN     +++ 
Sbjct: 136 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 195

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              +    D A  L      +K +  +   ++   D +    H D     +  N      
Sbjct: 196 GLCKRGDTDLALNLLNKMEAAKIEADV-VIFNTIIDSLCKYRHVD-----DALNLFKEME 249

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILIDA 557
                     +P   TY+ L+   C+ Y R      L+++M    ++PN +++  LIDA
Sbjct: 250 TK------GIRPNVVTYSSLISCLCS-YGRWSDASQLLSDMIEKKINPNLVTFNALIDA 301



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 111/262 (42%), Gaps = 32/262 (12%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M + G   ++ +Y +++   C  G+T LA  +   +  +EA  + + DV  ++TI+    
Sbjct: 178 MVQRGCQPNLVTYGVVVNGLCKRGDTDLALNL---LNKMEAAKI-EADVVIFNTIIDSLC 233

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
             +    AL + ++M + G+ PN +T+SSLI+   + G    A  L  +M++    PN  
Sbjct: 234 KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 293

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             N L+ A V+  +F  A +L                YD    R  + +     S+ N  
Sbjct: 294 TFNALIDAFVKEGKFVEAEKL----------------YDDMIKRSIDPDIFTYNSLVN-- 335

Query: 495 NFVPNSHYSSFDKRFSFK------PTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLS 545
            F  +       + F F       P   TYN L+K  C    RV+    L  EM   GL 
Sbjct: 336 GFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKS-KRVEDGTELFREMSHRGLV 394

Query: 546 PNHISWTILIDACGGSGNVEGA 567
            + +++T LI      G+ + A
Sbjct: 395 GDTVTYTTLIQGLFHDGDCDNA 416



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++ +++ + S  V  +I  ++ L++   N   L+  LEV+  MQK  +  D+  Y
Sbjct: 411 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIY 470

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             +++  C AG      +++     L  KGV K +V TY+T++      +  Q A  + +
Sbjct: 471 TTMIEGMCKAGKVDDGWDLFCS---LSLKGV-KPNVVTYNTMISGLCSKRLLQEAYALLK 526

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
            M   G  PN+ T+++LI A    G    +  L  EM
Sbjct: 527 KMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 563


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 151/354 (42%), Gaps = 32/354 (9%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSS---PNMYICRTIIDVCGICGDYMKSRAIYE 280
           F   + + GK  D+V   R  D   K L+S   P++    T+I++    G   +++ I  
Sbjct: 170 FTTLLIQLGK-FDMVDLAR--DMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMS 226

Query: 281 DLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +   +   N + + SL+  +   H+L     ++  M K G   +  +Y+ L+   C  G
Sbjct: 227 HIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEG 286

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A ++  E   +  KG+ +  V+TY+  +    DA     A+++   M   G  PN 
Sbjct: 287 RLEEAMDMLEE---MVQKGI-EPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNI 342

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL-QACVEACQFDRAFRLFR 457
            T+++LI+  +  G  E A+ L+ +ML  G  P +   N L+ Q CVE  +F+ AF +F+
Sbjct: 343 QTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEG-RFETAFTIFK 401

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK--RFSFKPTT 515
            W LS   +   + Y+        M    K  +              FDK  +    P  
Sbjct: 402 -WMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI-------------FDKMLKAGSSPNV 447

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            TYN L+   C   +      L+  M+  GL P+  ++T LI      G +E A
Sbjct: 448 ITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHA 501



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 129/298 (43%), Gaps = 43/298 (14%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           D++  + ++  M K G   ++ +YN L+   C  GN   A  +   ++ ++  G LK D 
Sbjct: 427 DIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRL---LEIMKGNG-LKPDA 482

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
           +TY+ ++  F+     + A  +   M+  G++PN +T++++I+   N   V+ A+ LF +
Sbjct: 483 WTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWK 542

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRA----FRLFRSWTL----SKTQVALGEDYDGN 475
           M+++G  P+SQ  N+++    +      A     ++ +   L    + T    G   +G 
Sbjct: 543 MVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGR 602

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSH-YSSFD---------------------KRFSFKP 513
           T     + H+ ++      N+ PN + YSS                         +  +P
Sbjct: 603 TGLAFKIFHEMEKR-----NYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEP 657

Query: 514 TTTTYNILMKACCTDY--YRVKALMNEMRTVGLSPN-HISWTILIDACGGSGNVEGAL 568
              TY  L+K  C +   Y    L+  M+  GL P+  I   +LI  C     VE AL
Sbjct: 658 NVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNL-KVESAL 714



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 121/295 (41%), Gaps = 26/295 (8%)

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEV--YKNMQKLGVMADMASYNILLKACCLAGN 339
           ++ +    NI  F +L++  + D KF + +  Y  M   G++    +YN L+   C+ G 
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGR 392

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  I+   K + + G L     TY+ I+K F      Q A+ + + ML AG +PN I
Sbjct: 393 FETAFTIF---KWMLSHGSLP-STQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVI 448

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+++LI      G +  AM L E M   G +P++     L+       + + A  LF   
Sbjct: 449 TYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGM 508

Query: 460 T---LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
               +S   V     Y    D   N+   D  ++      V + +           P++ 
Sbjct: 509 MEHGISPNHVT----YTAIIDGYFNLAKVD-DALALFWKMVESGNL----------PSSQ 553

Query: 517 TYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           TYN+++            +    +M   GL PN I++T  ID    +G    A +
Sbjct: 554 TYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFK 608


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 129/285 (45%), Gaps = 51/285 (17%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK-SRAIYEDL 282
           +   V   G+ R   S  +  +   K    PN+     +I   G C +Y+K +  ++ ++
Sbjct: 380 YTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYG-CANYLKEALNVFNEM 438

Query: 283 RSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
           +      +   + +L++++A    +   + +YK MQ+ G+  D  +Y++++     AGN 
Sbjct: 439 QEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNL 498

Query: 341 VLAQEIYGE-VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             A  ++ E V+H    G +  ++ TY+ ++ + A A+ ++MALK+  DM +AG  P+ +
Sbjct: 499 AAAHWLFCEMVEH----GCVP-NLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKV 553

Query: 400 TWSSLINACAN-----------------------------------AGLVEQAMHLFEEM 424
           T+S ++ A  +                                   AG VE+A   ++ M
Sbjct: 554 TYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAM 613

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
           L AG  PN   CN LL A      F R  RL  ++ L ++ VALG
Sbjct: 614 LNAGLLPNVPTCNSLLSA------FLRLHRLPDAYNLVQSMVALG 652



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 105/227 (46%), Gaps = 6/227 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  +    K   +  A+  Y   ++   SP+ +    II+  G  G+   +  ++ +
Sbjct: 448 VTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCE 507

Query: 282 LRSQNVTLNIYVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +       N+  +N +  +   A + +  L++Y +MQ  G   D  +Y+I+++A    G 
Sbjct: 508 MVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGY 567

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ ++ E   ++ K  +  D   Y  +V ++  A   + A +  + ML+AG+ PN  
Sbjct: 568 LEEAESVFVE---MQQKNWVP-DEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVP 623

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           T +SL++A      +  A +L + M+  G  P+ Q   +LL  C EA
Sbjct: 624 TCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLLLSCCTEA 670



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 27/262 (10%)

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQ-----EIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           + G  A+ A YN+         N +L Q        G    L  +   + D  TY+T+V 
Sbjct: 326 RWGPTAEKALYNLNFSMDAYQANQILKQLQDPSVALGFFDWLRRQPGFRHDGHTYTTMVG 385

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +   A+ +    K+ E M+  G  PN +T++ LI+    A  +++A+++F EM + GCEP
Sbjct: 386 ILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEP 445

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +      L+    +A   D A  +++     + Q A G   D  T  +          I 
Sbjct: 446 DRVTYCTLIDIHAKAGFIDVAMSMYK-----RMQEA-GLSPDTFTYSV----------II 489

Query: 492 NTPNFVPN---SHYSSFDK-RFSFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLS 545
           N      N   +H+   +       P   TYNI+  ++A   +Y     L ++M+  G  
Sbjct: 490 NCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQ 549

Query: 546 PNHISWTILIDACGGSGNVEGA 567
           P+ ++++I+++A G  G +E A
Sbjct: 550 PDKVTYSIVMEALGHCGYLEEA 571


>gi|255661168|gb|ACU25753.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 352

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  VT N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVTPNTTSYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 275

Query: 455 LFR 457
           LF+
Sbjct: 276 LFQ 278



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGVTPNT ++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLTMYVENKKFLEALSVF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +           R+  
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGIEPNVVSYNTLLRVYG 195

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
                     +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 196 ----------DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRA 273



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 107/236 (45%), Gaps = 6/236 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  FGK+    +AL      ++     ++ +   +I++     DY K+ +I+  L+
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
               T ++  +N+++NV   A   +    +   M+  GV  +  SY+ LL         +
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLTMYVENKKFL 131

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  ++ E++ ++      LD+ T + ++ V+      + A K+   M   G+ PN +++
Sbjct: 132 EALSVFAEMREIKC----LLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           ++L+    +A L  +A+HLF  M +   E N    N ++    +  + ++A  L +
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQ 243



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 101/205 (49%), Gaps = 10/205 (4%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVY 312
           ++  C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + ++
Sbjct: 148 DLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 207

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + MQ+  +  ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ +
Sbjct: 208 RLMQRKNIEQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISI 263

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +        A  + + + S+GV  + + + ++I A   AGLV  A  L  E+ +    P+
Sbjct: 264 WGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PD 319

Query: 433 SQCCNILLQACVEACQFDRAFRLFR 457
           +   +I +     A + + A  +FR
Sbjct: 320 NIPRDIAIHILAGAGRIEEATWVFR 344


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 137/310 (44%), Gaps = 37/310 (11%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   ++   ++++    +  N  ++  L+N    A +L   L +++ +  LGV+ D+ + 
Sbjct: 557 GKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTC 616

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           +  +      G    A +++ E+K    KG++  DVFTYS+++  F      + A ++ +
Sbjct: 617 SAFIHGLLKNGRVQEALKVFSELKE---KGLVP-DVFTYSSLISGFCKQGEVEKAFELHD 672

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M   G+ PN   +++L++    +G +++A  LF+ M + G EP+S   + ++    ++ 
Sbjct: 673 EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 732

Query: 448 QFDRAFRLFRSWTLSKTQ--------VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
               AF LF        Q        +  G   +G+ ++  N+  +  Q           
Sbjct: 733 NVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQ----------- 781

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
                  K F+   TT ++N L+   C          L  EM    + P+H+++T +ID 
Sbjct: 782 -------KGFA---TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDW 831

Query: 558 CGGSGNVEGA 567
              +G +E A
Sbjct: 832 HCKAGKMEEA 841



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/469 (20%), Positives = 180/469 (38%), Gaps = 79/469 (16%)

Query: 137 KKLNELGVAPLELFDGSGFKLLKNECQRLLDS----GEVEMFVGLMEVLEEFRLPVKELD 192
           K++NE  +   E    +G K   N C  L+D     G+++  + + +V+    +P+  + 
Sbjct: 312 KRMNEAKLT-FEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLIT 370

Query: 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADIL--------------FCNFVREFGKKRDLV 238
               I  LC          ++  +   A+IL              FC  +  + ++ ++ 
Sbjct: 371 YNVLIHGLC----------KFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMG 420

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
            AL   D  +K    P+      +I+    C D   +  + E +    +  N+ V++ L+
Sbjct: 421 RALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILI 480

Query: 299 NVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
              A +  ++    +   M   GV  D+  YN ++     AG     +E    +  ++ +
Sbjct: 481 MAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKM---EEASTYLLEIQGR 537

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G LK D  T+   +  ++       A K  ++ML  G+ PN   ++ LIN    AG + +
Sbjct: 538 G-LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME 596

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476
           A+ +F  +   G  P+ Q C+  +   ++  +   A ++F                    
Sbjct: 597 ALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFS------------------- 637

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSF------DKRFSFK---------PTTTTYNIL 521
                 E K+K  + +   F  +S  S F      +K F            P    YN L
Sbjct: 638 ------ELKEKGLVPDV--FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNAL 689

Query: 522 MKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           +   C   D  R + L + M   GL P+ ++++ +ID    S NV  A 
Sbjct: 690 VDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAF 738



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 133/305 (43%), Gaps = 26/305 (8%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++ +  ++  + +  N ++++ ++       D+   +E+ ++M + G++ +  +Y
Sbjct: 242 GDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTY 301

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            I+    C A     A+  + E++    K  LK D    S ++  F         L++K+
Sbjct: 302 TIITAGLCRAKRMNEAKLTFEEMQ----KTGLKPDYNACSALIDGFMREGDIDEVLRIKD 357

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            M+S G+  N IT++ LI+     G +E+A  + + M+  GC+PNS+   +L++      
Sbjct: 358 VMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREH 417

Query: 448 QFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
              RA  L        L  + V+ G         I+ + H    S+ N    +    +S 
Sbjct: 418 NMGRALELLDEMEKRNLVPSAVSYGA-------MINGLCHCKDLSLAN--KLLEKMTFS- 467

Query: 505 FDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
                  KP    Y+IL+ A  ++      + L++ M   G++P+   +  +I     +G
Sbjct: 468 -----GLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAG 522

Query: 563 NVEGA 567
            +E A
Sbjct: 523 KMEEA 527



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/377 (19%), Positives = 168/377 (44%), Gaps = 37/377 (9%)

Query: 221 DILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRA 277
           D+  C+ F+    K   +  AL+ +   K+    P+++   ++I   G C  G+  K+  
Sbjct: 612 DVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS--GFCKQGEVEKAFE 669

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++++  + +  NI+++N+L++    + D++   +++  M + G+  D  +Y+ ++   C
Sbjct: 670 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC 729

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            + N   A  ++ E   + +KGV +   F Y+ +V         + A+ +  +ML  G  
Sbjct: 730 KSENVAEAFSLFHE---MPSKGV-QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA 785

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
             T+++++LI+    +  +++A  LF+EM+     P+      ++    +A + + A  L
Sbjct: 786 -TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLL 844

Query: 456 FRSW--------TLSKTQVALGEDYDGNTDRI----SNMEHKDKQSITNTPNFVPNSHYS 503
           F+          T++ T +  G +  G +  +      M  K  +    T   V  +H  
Sbjct: 845 FKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCK 904

Query: 504 SFDKRFSFK-----------PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHIS 550
             +   +FK              T +++L+ A C   D      L++EM  +GL P+  +
Sbjct: 905 EDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAA 964

Query: 551 WTILIDACGGSGNVEGA 567
              L+ +   +G ++ A
Sbjct: 965 CNTLVRSFHEAGKMDEA 981



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++K MQ+  ++ D  +Y  L+      G +    E++   + + AKGV K D  TY  ++
Sbjct: 844 LFKEMQERNLIVDTVTYTSLMYGYNKLGQS---SEVFALFEKMVAKGV-KPDEVTYGLVI 899

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                      A K++++++  G+         LI A      + +A  L +EM + G +
Sbjct: 900 YAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLK 959

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRS 458
           P+   CN L+++  EA + D A R+F  
Sbjct: 960 PSLAACNTLVRSFHEAGKMDEATRVFEG 987



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 100/263 (38%), Gaps = 55/263 (20%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +VY  M    +  D+ +Y  L+ A C  G+   A+ +  E   ++ KG L  + F YS +
Sbjct: 214 KVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIE---MDEKG-LNPNEFIYSLV 269

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           ++          A+++K  M   G+ PNT T++ +      A  + +A   FEEM + G 
Sbjct: 270 IEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGL 329

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           +P+   C+ L+   +     D   R+                             KD   
Sbjct: 330 KPDYNACSALIDGFMREGDIDEVLRI-----------------------------KDVMV 360

Query: 490 ITNTP-NFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
               P N +                   TYN+L+   C      KA  ++  M T+G  P
Sbjct: 361 SCGIPINLI-------------------TYNVLIHGLCKFGKMEKAAEILKGMVTLGCKP 401

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
           N  ++ +LI+      N+  AL+
Sbjct: 402 NSRTFCLLIEGYCREHNMGRALE 424


>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g04810, chloroplastic; AltName: Full=Maize PPR4
           homolog; Short=AtPPR4; Flags: Precursor
 gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
           thaliana]
 gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 952

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 107/233 (45%), Gaps = 6/233 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           IL+ N +  F    ++  A++     +K    P       II      GD  +S  +++ 
Sbjct: 555 ILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDM 614

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R       ++ FN L+N  V    ++  +E+   M   GV A+  +Y  +++     G+
Sbjct: 615 MRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGD 674

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A E +     L+ +G L +D+FTY  ++K    +   Q AL V ++M +  +  N+ 
Sbjct: 675 TGKAFEYF---TRLQNEG-LDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSF 730

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            ++ LI+  A  G V +A  L ++M + G +P+       + AC +A   +RA
Sbjct: 731 VYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRA 783



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 111/248 (44%), Gaps = 6/248 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   +    +KR +  A+   D       S N +    I+      GD  K+   +  L+
Sbjct: 627 FNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQ 686

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           ++ + ++I+ + +L+     +  ++  L V K M    +  +   YNIL+      G+  
Sbjct: 687 NEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVW 746

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A ++   ++ ++ +GV K D+ TY++ +   + A     A +  E+M + GV PN  T+
Sbjct: 747 EAADL---IQQMKKEGV-KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTY 802

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           ++LI   A A L E+A+  +EEM   G +P+    + LL + +       A+      T+
Sbjct: 803 TTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTI 862

Query: 462 SKTQVALG 469
            K  V  G
Sbjct: 863 CKEMVEAG 870



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 138/346 (39%), Gaps = 33/346 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P +     +I++    G   K+  +   ++ + V  N+  ++ ++N  V   D      
Sbjct: 481 TPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFA 540

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+++M K G+  D+  YN ++ A C  GN   A +   E++ L  +   +    T+  I+
Sbjct: 541 VFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTR----TFMPII 596

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +A +   + +L+V + M   G  P   T++ LIN       +E+A+ + +EM  AG  
Sbjct: 597 HGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVS 656

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG------NTDRI-SNME 483
            N      ++Q         +AF  F         V +   Y+        + R+ S + 
Sbjct: 657 ANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIF-TYEALLKACCKSGRMQSALA 715

Query: 484 HKDKQSITNTP--NFVPNSHYSSFDKRF---------------SFKPTTTTYNILMKAC- 525
              + S  N P  +FV N     + +R                  KP   TY   + AC 
Sbjct: 716 VTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACS 775

Query: 526 -CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
              D  R    + EM  +G+ PN  ++T LI     +   E AL C
Sbjct: 776 KAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSC 821



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 129/314 (41%), Gaps = 26/314 (8%)

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNM 315
           I  T++D   +  D  K   +++ L+    T  +  +  L+N+     K +  LEV + M
Sbjct: 451 IYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVM 510

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           ++ GV  ++ +Y++++       +   A  ++ ++     K  +K DV  Y+ I+  F  
Sbjct: 511 KEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VKEGMKPDVILYNNIISAFCG 566

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
                 A++  ++M      P T T+  +I+  A +G + +++ +F+ M + GC P    
Sbjct: 567 MGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHT 626

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH---KDKQSITN 492
            N L+   VE  Q ++A  +    TL+                +S  EH   K  Q   +
Sbjct: 627 FNGLINGLVEKRQMEKAVEILDEMTLAG---------------VSANEHTYTKIMQGYAS 671

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHIS 550
             +      Y +  +         TY  L+KACC       AL    EM    +  N   
Sbjct: 672 VGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFV 731

Query: 551 WTILIDACGGSGNV 564
           + ILID     G+V
Sbjct: 732 YNILIDGWARRGDV 745



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/379 (20%), Positives = 152/379 (40%), Gaps = 62/379 (16%)

Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFT 308
           +S P+      ++   G  GD  ++R  +E +R++ +T    ++ SL++  A   D+   
Sbjct: 304 ISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEA 363

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNT---------------VLAQEIYGE---- 349
           L   + M++ G+   + +Y++++     AG+                 L   IYG+    
Sbjct: 364 LSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYA 423

Query: 350 -------------VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
                        V+ +E +G+    +  Y T++  +      +  L V + +   G TP
Sbjct: 424 HCQTCNMERAEALVREMEEEGI-DAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTP 482

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             +T+  LIN     G + +A+ +   M + G + N +  ++++   V+   +  AF +F
Sbjct: 483 TVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVF 542

Query: 457 RSWTLS--KTQVALGEDYD------GNTDRISNMEHKDKQSITNTP---NFVP--NSHYS 503
                   K  V L  +        GN DR      K+ Q + + P    F+P  + +  
Sbjct: 543 EDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTV-KEMQKLRHRPTTRTFMPIIHGYAK 601

Query: 504 SFDKRFSFK-----------PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHIS 550
           S D R S +           PT  T+N L+          KA  +++EM   G+S N  +
Sbjct: 602 SGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHT 661

Query: 551 WTILIDACGGSGNVEGALQ 569
           +T ++      G+   A +
Sbjct: 662 YTKIMQGYASVGDTGKAFE 680


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 138/317 (43%), Gaps = 41/317 (12%)

Query: 281 DLRSQNVTLNIYVFNSLMN-------VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           ++ ++ +   +  +N++++       V A  +KF       M+ +G+  D+ +YN LL  
Sbjct: 333 EMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFV-----EMRAMGLQPDVITYNSLLNG 387

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C AG+   A  ++G+++H      L   V TY+ ++  +      + A ++KE+M+  G
Sbjct: 388 YCKAGSLKEALLLFGDLRH----AGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQG 443

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             P+  T++ L+    NA  +  A   F+EML  G +P+    N  ++A +      +AF
Sbjct: 444 CLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAF 503

Query: 454 RL--------FRSWTLSKTQVALGEDYDGNTDRISNME----HKDKQSITNTPNFVPNSH 501
           RL          S T++   +  G    GN +   +++    H   Q    T   + ++H
Sbjct: 504 RLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAH 563

Query: 502 YSSF---DKRFSFK--------PTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNH 548
                  + R  FK        P+  TY + + A C   + Y       +M   G+ PN 
Sbjct: 564 CERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNE 623

Query: 549 ISWTILIDACGGSGNVE 565
           I++ +LI A   +G  +
Sbjct: 624 ITYNVLIHALCRTGRTQ 640



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 111/504 (22%), Positives = 186/504 (36%), Gaps = 113/504 (22%)

Query: 79  SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138
           + LA+ G LEE A +VE + +S+   S   + L   ++A G VK   + +++        
Sbjct: 282 TGLARKGDLEEAAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLE-------- 333

Query: 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEM----FVGLMEVLEEFRLPVKELDEE 194
           +   G+ P  +   +           LL SG+VE     FV                  E
Sbjct: 334 MENEGIMPTVVTYNAMI-------HGLLQSGQVEAAQVKFV------------------E 368

Query: 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254
            R + L   +PDV              I + + +  + K   L  AL  +   +    +P
Sbjct: 369 MRAMGL---QPDV--------------ITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAP 411

Query: 255 NMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLE 310
            +     +ID  G C  GD  ++R + E++  Q    ++  +  LM  + NA  L    E
Sbjct: 412 TVLTYNILID--GYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMARE 469

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            +  M   G+  D  +YN  ++A    G    A  +  EV  LE    +  D  TY+ ++
Sbjct: 470 FFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLR-EVMMLEG---ISSDTVTYNILI 525

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                      A  ++  M+  G+ P+ IT++ LI+A    GL+ +A   F++M+  G  
Sbjct: 526 DGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLA 585

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P++    + + A         A+  FR       +                         
Sbjct: 586 PSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVE------------------------- 620

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNH 548
                                 P   TYN+L+ A C       A    +EM   GL PN 
Sbjct: 621 ----------------------PNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNK 658

Query: 549 ISWTILIDACGGSGNVEGALQCRF 572
            ++T+LID     GN E A++  F
Sbjct: 659 YTYTLLIDGNCKEGNWEDAMRFYF 682



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 97/232 (41%), Gaps = 26/232 (11%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           DV   + +++V +DA  W     V  +ML  G+ P+ +T+++L+++    G  ++   L 
Sbjct: 201 DVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLL 260

Query: 422 EEM--LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA----------LG 469
           +EM    +GC PN    N+++         + A  +     LSK   +          L 
Sbjct: 261 KEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASSFTYNPLITGLLA 320

Query: 470 EDYDGNTDRIS-NMEHKDKQSITNTPNFVPNSHYSSFD-----------KRFSFKPTTTT 517
           + +    D +   ME++       T N + +    S             +    +P   T
Sbjct: 321 KGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVIT 380

Query: 518 YNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           YN L+   C      +AL+   ++R  GL+P  +++ ILID     G++E A
Sbjct: 381 YNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEA 432



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 4/128 (3%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           L+   + +K+M   G+     +Y + + A C  GN   A   YG  + +  +GV + +  
Sbjct: 569 LREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSA---YGWFRKMLEEGV-EPNEI 624

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY+ ++         Q+A +   +ML  G+ PN  T++ LI+     G  E AM  + EM
Sbjct: 625 TYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEM 684

Query: 425 LQAGCEPN 432
            Q G  P+
Sbjct: 685 HQNGIHPD 692



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 14/194 (7%)

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           + L    +M S GV P+    + ++   ++A   +    +  EMLQ G EP+    N LL
Sbjct: 185 LCLSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLL 244

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
            + ++  + D+   L +    ++    L  D   N   I+ +  K    +      V   
Sbjct: 245 DSFLKEGRNDKVAMLLKEME-TRGSGCLPNDVTHNV-VITGLARKG--DLEEAAEMVEG- 299

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDAC 558
                  R S K ++ TYN L+       +  KA  L  EM   G+ P  +++  +I   
Sbjct: 300 ------MRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGL 353

Query: 559 GGSGNVEGALQCRF 572
             SG VE A Q +F
Sbjct: 354 LQSGQVEAA-QVKF 366


>gi|449462001|ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
 gi|449521148|ref|XP_004167592.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
          Length = 710

 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 42/241 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL--MNVNAHDLKFTLEV 311
           P+      I+DV    G   +  ++YE  R+   T + Y F+ L  M   A D    + V
Sbjct: 253 PDEVTYSAILDVYANLGKVEEVLSLYERGRASGWTPDPYTFSVLGKMFGEAGDYDGIMYV 312

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M+ + +  ++  YN LL A   AG    A+ ++ E+     +  +  +  T + +VK
Sbjct: 313 LQEMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEM----VESGITPNEKTLTALVK 368

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL------------------ 413
           ++  A+W + AL + E M S G   + I +++L+N CA+ GL                  
Sbjct: 369 IYGKARWARDALDLWERMRSNGWPMDFILYNTLLNMCADLGLEEEAETLFEEMKKSKHSR 428

Query: 414 ------------------VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
                             V+++M LFEEML+ G E N  CC  L+Q   ++ + D   R+
Sbjct: 429 PDSWSYTAMLNIYGSGGNVKRSMELFEEMLELGVEINVMCCTCLIQCLGKSGRIDDLVRV 488

Query: 456 F 456
           F
Sbjct: 489 F 489



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 97/212 (45%), Gaps = 5/212 (2%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
           FG+  D    +      K     PN+ +  T++D  G  G    +R++++++    +T N
Sbjct: 300 FGEAGDYDGIMYVLQEMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVESGITPN 359

Query: 291 IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
                +L+ +   A   +  L++++ M+  G   D   YN LL  C   G   L +E   
Sbjct: 360 EKTLTALVKIYGKARWARDALDLWERMRSNGWPMDFILYNTLLNMCADLG---LEEEAET 416

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
             + ++     + D ++Y+ ++ ++      + ++++ E+ML  GV  N +  + LI   
Sbjct: 417 LFEEMKKSKHSRPDSWSYTAMLNIYGSGGNVKRSMELFEEMLELGVEINVMCCTCLIQCL 476

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
             +G ++  + +F   +Q G +P+ + C  LL
Sbjct: 477 GKSGRIDDLVRVFNVSVQKGIKPDDRLCGCLL 508



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 106/217 (48%), Gaps = 18/217 (8%)

Query: 237 LVSALRAYDASKKHL-----SSPNMYICRTII-DVCGICGDYMKSRAIYEDLRSQNVTLN 290
           ++++LR +   K HL      S N++   TI  +V      Y +   + EDL ++ ++  
Sbjct: 158 ILNSLRPW--QKTHLFFNWIKSQNLFPMETIFYNVAMKSLRYGRQFQLIEDLANEMISAG 215

Query: 291 IYV----FNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           I +    +++++       +F   +E ++ M K G+M D  +Y+ +L      G     +
Sbjct: 216 IELDNITYSTIITCAKKCSRFDKAMEWFERMYKTGLMPDEVTYSAILDVYANLGK---VE 272

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           E+    +   A G    D +T+S + K+F +A  +   + V ++M S  + PN + +++L
Sbjct: 273 EVLSLYERGRASGWTP-DPYTFSVLGKMFGEAGDYDGIMYVLQEMKSIEMQPNLVVYNTL 331

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           ++A   AG    A  LF+EM+++G  PN +    L++
Sbjct: 332 LDAMGKAGKPGFARSLFDEMVESGITPNEKTLTALVK 368



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 98/246 (39%), Gaps = 57/246 (23%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN+ +K+        L +++  E+        ++LD  TYSTI+        +  A++  
Sbjct: 188 YNVAMKSLRYGRQFQLIEDLANEM----ISAGIELDNITYSTIITCAKKCSRFDKAMEWF 243

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           E M   G+ P+ +T+S++++  AN G VE+ + L+E    +G  P+    ++L +   EA
Sbjct: 244 ERMYKTGLMPDEVTYSAILDVYANLGKVEEVLSLYERGRASGWTPDPYTFSVLGKMFGEA 303

Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
                                   DYDG    +  M     +SI   PN V         
Sbjct: 304 G-----------------------DYDGIMYVLQEM-----KSIEMQPNLV--------- 326

Query: 507 KRFSFKPTTTTYNILM----KACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
                      YN L+    KA    + R  +L +EM   G++PN  + T L+   G + 
Sbjct: 327 ----------VYNTLLDAMGKAGKPGFAR--SLFDEMVESGITPNEKTLTALVKIYGKAR 374

Query: 563 NVEGAL 568
               AL
Sbjct: 375 WARDAL 380


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 121/277 (43%), Gaps = 38/277 (13%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y++M   G++ D  +Y +L+           A+EI+ E++    KG+   DVF+Y  ++ 
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMR---GKGIAP-DVFSYGVLIN 635

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F+     Q A  + ++M+  G+TPN I ++ L+     +G +E+A  L +EM   G  P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD---RISNMEH---- 484
           N+     ++    ++     AFRLF    L K  V     Y    D   R++++E     
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEMKL-KGLVPDSFVYTTLVDGCCRLNDVERAITI 754

Query: 485 -----KDKQSITNTPNFVPNSHY-----------------SSFDKRFSFKPTTTTYNILM 522
                K   S T   N + N  +                  SFD RF  KP   TYNI++
Sbjct: 755 FGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFD-RFG-KPNDVTYNIMI 812

Query: 523 KACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
              C +      K L ++M+   L P  I++T L++ 
Sbjct: 813 DYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG 849



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 135/316 (42%), Gaps = 32/316 (10%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGV 320
           V G+C  GD   +  I +++ +     N+ ++ +L+     + +F   + V K M++ G+
Sbjct: 424 VKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGI 483

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             D+  YN L+     A     A+    E+     +  LK + FTY   +  + +A  + 
Sbjct: 484 APDIFCYNSLIIGLSKAKRMDEARSFLVEM----VENGLKPNAFTYGAFISGYIEASEFA 539

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A K  ++M   GV PN +  + LIN     G V +A   +  M+  G   +++   +L+
Sbjct: 540 SADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLM 599

Query: 441 QACVEACQFDRA---FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
               +  + D A   FR  R   ++    + G   +G + ++ NM+              
Sbjct: 600 NGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFS-KLGNMQKAS----------- 647

Query: 498 PNSHYSSFDKRF--SFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTI 553
                S FD+       P    YN+L+   C   +  + K L++EM   GL PN +++  
Sbjct: 648 -----SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCT 702

Query: 554 LIDACGGSGNVEGALQ 569
           +ID    SG++  A +
Sbjct: 703 IIDGYCKSGDLAEAFR 718



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 142/321 (44%), Gaps = 28/321 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P MY C   I V    G   K++A+++ + +  +      + SL+       +++   E+
Sbjct: 347 PYMYDC--CICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYEL 404

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M+K  ++    +Y  ++K  C +G+   A   Y  VK + A G  + +V  Y+T++K
Sbjct: 405 LVEMKKRNIVISPYTYGTVVKGMCSSGDLDGA---YNIVKEMIASGC-RPNVVIYTTLIK 460

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F     +  A++V ++M   G+ P+   ++SLI   + A  +++A     EM++ G +P
Sbjct: 461 TFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKP 520

Query: 432 NSQCCNILLQACVEACQF---DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           N+      +   +EA +F   D+  +  R   +   +V         T  I+  E+  K 
Sbjct: 521 NAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLC-------TGLIN--EYCKKG 571

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSP 546
            +        +++ S  D+         TY +LM     +      + +  EMR  G++P
Sbjct: 572 KVIEA----CSAYRSMVDQ--GILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625

Query: 547 NHISWTILIDACGGSGNVEGA 567
           +  S+ +LI+     GN++ A
Sbjct: 626 DVFSYGVLINGFSKLGNMQKA 646



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 109/247 (44%), Gaps = 19/247 (7%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P A + +C  +  + K  DL  A R +D  K     P+ ++  T++D C    D  ++  
Sbjct: 695 PNA-VTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAIT 753

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNM-----QKLGVMADMASYNIL 330
           I+     +    +   FN+L+N        +   EV   +      + G   D+ +YNI+
Sbjct: 754 IF-GTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDV-TYNIM 811

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +   C  GN   A+E++ ++++      L   V TY++++  +           V ++ +
Sbjct: 812 IDYLCKEGNLEAAKELFHQMQNAN----LMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI 867

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-----GCEPNSQCCNILLQACVE 445
           +AG+ P+ I +S +INA    G+  +A+ L ++M        GC+ +   C  LL    +
Sbjct: 868 AAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAK 927

Query: 446 ACQFDRA 452
             + + A
Sbjct: 928 VGEMEVA 934



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 20/160 (12%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           + ++L+  N  DL +  +VYK M +  V+ D+ +Y++L+ A C AGN  L +++  + + 
Sbjct: 192 LLDALLRWNRLDLFW--DVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEK 249

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
                 L +D                   ALK+KE M+  G+ P   T+  LI+      
Sbjct: 250 EFRTATLNVD------------------GALKLKESMICKGLVPLKYTYDVLIDGLCKIK 291

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            +E A  L  EM   G   ++   ++L+   ++    D A
Sbjct: 292 RLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 14/190 (7%)

Query: 226 NFVREFGKKRDLVSAL-RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284
           N+V +FGK       L R  D S      PN      +ID     G+   ++ ++  +++
Sbjct: 774 NWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833

Query: 285 QNVTLNIYVFNSLMNVNAHD----LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            N+   +  + SL+N   +D          V+      G+  D   Y++++ A    G T
Sbjct: 834 ANLMPTVITYTSLLN--GYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMT 891

Query: 341 VLAQEIYGEVKHLEAKGVL----KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
             A  +   V  + AK  +    KL + T   ++  FA     ++A KV E+M+     P
Sbjct: 892 TKALVL---VDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIP 948

Query: 397 NTITWSSLIN 406
           ++ T   LIN
Sbjct: 949 DSATVIELIN 958


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 127/321 (39%), Gaps = 55/321 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
           SP++    TI+      G   ++  + + +  ++   ++  +  L+     D  +   ++
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMK 260

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +   M+  G   D+ +YN+L+   C  G      E    +  + + G  + +V T++ I+
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRL---DEAIKFLNDMPSSGC-QPNVITHNIIL 316

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +       W  A K+  DML  G +P+ +T++ LIN     GL+ +A+ + E+M Q GC+
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ 376

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PNS   N LL    +  + DRA                                      
Sbjct: 377 PNSLSYNPLLHGFCKEKKMDRAIEYLE--------------------------------- 403

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNH 548
                 V    Y          P   TYN ++ A C D     A  ++N++ + G SP  
Sbjct: 404 ----RMVSRGCY----------PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL 449

Query: 549 ISWTILIDACGGSGNVEGALQ 569
           I++  +ID    +G    A++
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIK 470



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 25/241 (10%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G + D+ +YN+++   C AG      EI   +  L+   V   DV TY+TI++   D+  
Sbjct: 167 GAVPDVITYNVMISGYCKAG------EINNALSVLDRMSV-SPDVVTYNTILRSLCDSGK 219

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
            + A++V + ML     P+ IT++ LI A C ++G V  AM L +EM   GC P+    N
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG-VGHAMKLLDEMRDRGCTPDVVTYN 278

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK-DKQSITNTPNF 496
           +L+    +  + D A +       S  Q  +             + H    +S+ +T  +
Sbjct: 279 VLVNGICKEGRLDEAIKFLNDMPSSGCQPNV-------------ITHNIILRSMCSTGRW 325

Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTIL 554
           +      +   R  F P+  T+NIL+   C      +A  ++ +M   G  PN +S+  L
Sbjct: 326 MDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPL 385

Query: 555 I 555
           +
Sbjct: 386 L 386



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 106/229 (46%), Gaps = 16/229 (6%)

Query: 235 RDLVSALRAYDASK------KHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQN 286
           R + S  R  DA K      +   SP++     +I+   +C   +  RAI   E +    
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINF--LCRKGLLGRAIDILEKMPQHG 374

Query: 287 VTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
              N   +N L++    + K    +E  + M   G   D+ +YN +L A C  G    A 
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           EI   +  L +KG   + + TY+T++   A A     A+K+ ++M +  + P+TIT+SSL
Sbjct: 435 EI---LNQLSSKGCSPV-LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSL 490

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           +   +  G V++A+  F E  + G  PN+   N ++    ++ Q DRA 
Sbjct: 491 VGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAI 539



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/335 (19%), Positives = 136/335 (40%), Gaps = 63/335 (18%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           + +++R +  T ++  +N L+N       L   ++   +M   G   ++ ++NI+L++ C
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMC 320

Query: 336 LAGNTVLAQEIYGE----------------VKHLEAKGVL--KLDVF------------- 364
             G  + A+++  +                +  L  KG+L   +D+              
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+ ++  F   K    A++  E M+S G  P+ +T+++++ A    G VE A+ +  ++
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLF--------RSWTLSKTQVALGEDYDGNT 476
              GC P     N ++    +A +  +A +L         +  T++ + +  G   +G  
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL- 535
           D      H+                   F+ R   +P   T+N +M   C      +A+ 
Sbjct: 501 DEAIKFFHE-------------------FE-RMGIRPNAVTFNSIMLGLCKSRQTDRAID 540

Query: 536 -MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +  M   G  PN  S+TILI+     G  + AL+
Sbjct: 541 FLVFMINRGCKPNETSYTILIEGLAYEGMAKEALE 575



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 8/180 (4%)

Query: 267 GICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMA 322
           G C +    RAI   E + S+    +I  +N+++     D K    +E+   +   G   
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP 447

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
            + +YN ++     AG T  A ++  E++  +    LK D  TYS++V   +       A
Sbjct: 448 VLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD----LKPDTITYSSLVGGLSREGKVDEA 503

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +K   +    G+ PN +T++S++     +   ++A+     M+  GC+PN     IL++ 
Sbjct: 504 IKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEG 563



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 79/190 (41%), Gaps = 17/190 (8%)

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
             K  E+M+  G  P+ I  ++LI      G   +A  + E +  +G  P+    N+++ 
Sbjct: 121 GFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMIS 180

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              +A + + A  +    ++S   V          D       K KQ++      +    
Sbjct: 181 GYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCD-----SGKLKQAMEVLDRMLQRDC 235

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACG 559
           Y          P   TY IL++A C D     A  L++EMR  G +P+ +++ +L++   
Sbjct: 236 Y----------PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 560 GSGNVEGALQ 569
             G ++ A++
Sbjct: 286 KEGRLDEAIK 295


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 121/277 (43%), Gaps = 38/277 (13%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y++M   G++ D  +Y +L+           A+EI+ E++    KG+   DVF+Y  ++ 
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMR---GKGIAP-DVFSYGVLIN 635

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F+     Q A  + ++M+  G+TPN I ++ L+     +G +E+A  L +EM   G  P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD---RISNMEH---- 484
           N+     ++    ++     AFRLF    L K  V     Y    D   R++++E     
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEMKL-KGLVPDSFVYTTLVDGCCRLNDVERAITI 754

Query: 485 -----KDKQSITNTPNFVPNSHY-----------------SSFDKRFSFKPTTTTYNILM 522
                K   S T   N + N  +                  SFD RF  KP   TYNI++
Sbjct: 755 FGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFD-RFG-KPNDVTYNIMI 812

Query: 523 KACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
              C +      K L ++M+   L P  I++T L++ 
Sbjct: 813 DYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG 849



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 135/316 (42%), Gaps = 32/316 (10%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGV 320
           V G+C  GD   +  I +++ +     N+ ++ +L+     + +F   + V K M++ G+
Sbjct: 424 VKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGI 483

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             D+  YN L+     A     A+    E+     +  LK + FTY   +  + +A  + 
Sbjct: 484 APDIFCYNSLIIGLSKAKRMDEARSFLVEM----VENGLKPNAFTYGAFISGYIEASEFA 539

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A K  ++M   GV PN +  + LIN     G V +A   +  M+  G   +++   +L+
Sbjct: 540 SADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLM 599

Query: 441 QACVEACQFDRA---FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
               +  + D A   FR  R   ++    + G   +G + ++ NM+              
Sbjct: 600 NGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFS-KLGNMQKAS----------- 647

Query: 498 PNSHYSSFDKRF--SFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTI 553
                S FD+       P    YN+L+   C   +  + K L++EM   GL PN +++  
Sbjct: 648 -----SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCT 702

Query: 554 LIDACGGSGNVEGALQ 569
           +ID    SG++  A +
Sbjct: 703 IIDGYCKSGDLAEAFR 718



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 142/321 (44%), Gaps = 28/321 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P MY C   I V    G   K++A+++ + +  +      + SL+       +++   E+
Sbjct: 347 PYMYDC--CICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYEL 404

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M+K  ++    +Y  ++K  C +G+   A   Y  VK + A G  + +V  Y+T++K
Sbjct: 405 LVEMKKRNIVISPYTYGTVVKGMCSSGDLDGA---YNIVKEMIASGC-RPNVVIYTTLIK 460

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F     +  A++V ++M   G+ P+   ++SLI   + A  +++A     EM++ G +P
Sbjct: 461 TFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKP 520

Query: 432 NSQCCNILLQACVEACQF---DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           N+      +   +EA +F   D+  +  R   +   +V         T  I+  E+  K 
Sbjct: 521 NAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLC-------TGLIN--EYCKKG 571

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSP 546
            +        +++ S  D+         TY +LM     +      + +  EMR  G++P
Sbjct: 572 KVIEA----CSAYRSMVDQ--GILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625

Query: 547 NHISWTILIDACGGSGNVEGA 567
           +  S+ +LI+     GN++ A
Sbjct: 626 DVFSYGVLINGFSKLGNMQKA 646



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 109/247 (44%), Gaps = 19/247 (7%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P A + +C  +  + K  DL  A R +D  K     P+ ++  T++D C    D  ++  
Sbjct: 695 PNA-VTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAIT 753

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNM-----QKLGVMADMASYNIL 330
           I+     +    +   FN+L+N        +   EV   +      + G   D+ +YNI+
Sbjct: 754 IF-GTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDV-TYNIM 811

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +   C  GN   A+E++ ++++      L   V TY++++  +           V ++ +
Sbjct: 812 IDYLCKEGNLEAAKELFHQMQNAN----LMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI 867

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-----GCEPNSQCCNILLQACVE 445
           +AG+ P+ I +S +INA    G+  +A+ L ++M        GC+ +   C  LL    +
Sbjct: 868 AAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAK 927

Query: 446 ACQFDRA 452
             + + A
Sbjct: 928 VGEMEVA 934



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 20/160 (12%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           + ++L+  N  DL +  +VYK M +  V+ D+ +Y++L+ A C AGN  L +++  + + 
Sbjct: 192 LLDALLRWNRLDLFW--DVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEK 249

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
                 L +D                   ALK+KE M+  G+ P   T+  LI+      
Sbjct: 250 EFRTATLNVD------------------GALKLKESMICKGLVPLKYTYDVLIDGLCKIK 291

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            +E A  L  EM   G   ++   ++L+   ++    D A
Sbjct: 292 RLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 14/190 (7%)

Query: 226 NFVREFGKKRDLVSAL-RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284
           N+V +FGK       L R  D S      PN      +ID     G+   ++ ++  +++
Sbjct: 774 NWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833

Query: 285 QNVTLNIYVFNSLMNVNAHD----LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            N+   +  + SL+N   +D          V+      G+  D   Y++++ A    G T
Sbjct: 834 ANLMPTVITYTSLLN--GYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMT 891

Query: 341 VLAQEIYGEVKHLEAKGVL----KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
             A  +   V  + AK  +    KL + T   ++  FA     ++A KV E+M+     P
Sbjct: 892 TKALVL---VDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIP 948

Query: 397 NTITWSSLIN 406
           ++ T   LIN
Sbjct: 949 DSATVIELIN 958


>gi|290971115|ref|XP_002668380.1| predicted protein [Naegleria gruberi]
 gi|284081755|gb|EFC35636.1| predicted protein [Naegleria gruberi]
          Length = 1041

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 104/461 (22%), Positives = 183/461 (39%), Gaps = 87/461 (18%)

Query: 97  VVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156
           +V+ E  + K    +++    S I   I+E  I   + V+ ++ + G+ P    D + F 
Sbjct: 90  LVIEEIELVKQQKWMTIITWNSLIQAYIQENNIKKAIDVIHEMKDNGICP----DSATFN 145

Query: 157 LLKNEC-----------------QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199
           +L   C                   L D+  VE+   ++    +   P   ++E     +
Sbjct: 146 ILITACANTKLFAEGKLIHKITTNTLKDNCSVELLTSIINFYTKCGHPEIAINE----CE 201

Query: 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYIC 259
              +K  +N+ + + C+V  A I     + E  K  D V+ ++ +  +      PN    
Sbjct: 202 KMKSKGLMNV-VSFTCLV-EAYIQ----INEIQKAIDTVTEMKQFKVT------PNATTF 249

Query: 260 RTIIDVCGICGDYMKSRAIYE----------DLRSQNVTLNIYVFNSLMNVNAHDLKFTL 309
             ++  C     Y +   I++           L+     +N Y      ++  ++ +  +
Sbjct: 250 SILLTACAKLKLYKEGILIHKIANNTLRDNSSLKLLTSIINFYTKCGHPDIAINEFRQAI 309

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK-LDVFTYST 368
           E+   MQ  GV  +  ++NILL AC    ++ L +E  G+  H  A G LK       ++
Sbjct: 310 EIITEMQDYGVEPNSTTFNILLTAC---ADSKLFEE--GKAIHKLATGTLKDYSSELLAS 364

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           IV  +      + A+K  E + S G+  N I W+ LI A      V QA+ +  EM   G
Sbjct: 365 IVNFYTKCGHPETAIKECEQLKSKGLM-NNIVWNCLIQAYIQNKEVRQAIEVITEMQDYG 423

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            EPNS   NILL+AC ++  F+    L                            H+   
Sbjct: 424 IEPNSTTFNILLKACADSKLFEEGKLL----------------------------HQASG 455

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
            + N P    N+      ++F   P +TTY I++KA CTD+
Sbjct: 456 QVLNNPTIELNNKM----QQFGLNPDSTTYTIILKA-CTDF 491



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 6/146 (4%)

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTY 366
           T+E+   MQ+ G+  D  +Y I+LKAC    +  L +E  G++ H +A + V        
Sbjct: 462 TIELNNKMQQFGLNPDSTTYTIILKACT---DFNLFEE--GKLIHEQAIENVKDCSTELL 516

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           ++I+  +      ++++   E + S G+  N   W+ LI A      V +++ +  EM  
Sbjct: 517 TSIISFYTKCGHPEVSIGECEKLQSKGLMNNVAVWNCLIQAHIQTKEVPKSIKIITEMQD 576

Query: 427 AGCEPNSQCCNILLQACVEACQFDRA 452
            G EPNS   NILL AC ++  F+  
Sbjct: 577 CGVEPNSTTFNILLTACADSKLFEEG 602



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 124/344 (36%), Gaps = 78/344 (22%)

Query: 289 LNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           +N++++   +N  +   DL+  L +  NM+   +  + A Y  LLKA  +  N  +   +
Sbjct: 1   MNVFLYTHFINNCIWNDDLERALAIVLNMKGKDIEPNYAIYIPLLKAATVKKNIQVGMTL 60

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE-DMLSAGVTPNTITWSSLI 405
           Y  VK         L     ST +  FA  K  +  L ++E +++        ITW+SLI
Sbjct: 61  YQLVKK------SNLASPQLSTTIISFA-LKLRKPELVIEEIELVKQQKWMTIITWNSLI 113

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR-------- 457
            A      +++A+ +  EM   G  P+S   NIL+ AC     F     + +        
Sbjct: 114 QAYIQENNIKKAIDVIHEMKDNGICPDSATFNILITACANTKLFAEGKLIHKITTNTLKD 173

Query: 458 --SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV--------PNSHYSSFD- 506
             S  L  + +            I+  E    + + N  +F          N    + D 
Sbjct: 174 NCSVELLTSIINFYTKCGHPEIAINECEKMKSKGLMNVVSFTCLVEAYIQINEIQKAIDT 233

Query: 507 ----KRFSFKPTTTTYNILMKACC------------------------------------ 526
               K+F   P  TT++IL+ AC                                     
Sbjct: 234 VTEMKQFKVTPNATTFSILLTACAKLKLYKEGILIHKIANNTLRDNSSLKLLTSIINFYT 293

Query: 527 ---------TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561
                     ++ +   ++ EM+  G+ PN  ++ IL+ AC  S
Sbjct: 294 KCGHPDIAINEFRQAIEIITEMQDYGVEPNSTTFNILLTACADS 337



 Score = 38.5 bits (88), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 17/195 (8%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE---VYKNMQKLGVMADMASY 327
           + +KS+ +  D+   N  +  ++ ++    N   +++ L    V  N  K  +  D  +Y
Sbjct: 642 EQLKSKGLMNDVAIWNCLIQAHIQSTTNTQNPSTIEYGLNKAMVVFNEMKEHIEPDKITY 701

Query: 328 NILLKACCLAGNTVLAQEIYGEVK------HLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            ILL  C       +  +I  E+K      H E   V+   ++ YS   ++   +   Q+
Sbjct: 702 LILLAGCGEYFARKMGLDIIDELKLKGMDVHEEIVSVM---IYFYS---RIAYQSTAQQL 755

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
             K+ E+  SA    + IT++++++  A  G   QAM+LF EM+    E N     I+L 
Sbjct: 756 FEKLVEE--SAQKRLSIITYNNMLSCYAQHGKGTQAMNLFNEMVAKNVEMNENTFTIMLN 813

Query: 442 ACVEACQFDRAFRLF 456
                   D A +L+
Sbjct: 814 TFSHCGMIDEANQLY 828


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 155/353 (43%), Gaps = 44/353 (12%)

Query: 204 KPDV---NLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICR 260
           KPD+   N  I   C   R +  F +F +E  +K      +R           PN+    
Sbjct: 187 KPDIVAYNAIIDSLCKTKRVNDAF-DFFKEIERK-----GIR-----------PNVVTYT 229

Query: 261 TIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQ 316
            +++  G+C     S A  +  D+  + +T N+  +++L++    + K     E+++ M 
Sbjct: 230 ALVN--GLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 287

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           ++ +  D+ +Y+ L+   CL      A +++     + +KG L  DV +Y+T++  F  A
Sbjct: 288 RMSIDPDIVTYSSLVNGLCLHDRIDEANQMF---DLMVSKGCLA-DVVSYNTLINGFCKA 343

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
           K  +  +K+  +M   G+  NT+T+++LI     AG V++A   F +M   G  P+    
Sbjct: 344 KRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTY 403

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           NILL    +  + ++A  +F    + K ++ L  D    T  I  M    K         
Sbjct: 404 NILLGGLCDNGELEKALVIFED--MQKREMDL--DIVTYTTVIRGMCKTGKVE------- 452

Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPN 547
              S + S   +   KP   TY  +M   CT    + V+AL  +M+  GL  N
Sbjct: 453 EAWSLFCSLSLK-GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 504



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 18/256 (7%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M ++G   D+ +YN ++ + C    T    + +   K +E KG+ + +V TY+ +V    
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLC---KTKRVNDAFDFFKEIERKGI-RPNVVTYTALVNGLC 236

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           ++  W  A ++  DM+   +TPN IT+S+L++A    G V +A  LFEEM++   +P+  
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             + L+      C  DR     + + L  ++  L +    NT  + N   K K+      
Sbjct: 297 TYSSLVNG---LCLHDRIDEANQMFDLMVSKGCLADVVSYNT--LINGFCKAKRVEDGMK 351

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWT 552
            F   S              T TYN L++      D  + +   ++M   G+SP+  ++ 
Sbjct: 352 LFREMSQR-------GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404

Query: 553 ILIDACGGSGNVEGAL 568
           IL+     +G +E AL
Sbjct: 405 ILLGGLCDNGELEKAL 420



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 85/216 (39%), Gaps = 50/216 (23%)

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K +E  G+ + D++T++ ++  F       +AL +   ML  G  P+ +T  SL+N    
Sbjct: 109 KKMEVLGI-RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 167

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
              V  A+ L ++M++ G +P+    N ++ +  +  + + AF  F+             
Sbjct: 168 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI----------- 216

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TD 528
                                               +R   +P   TY  L+   C  + 
Sbjct: 217 ------------------------------------ERKGIRPNVVTYTALVNGLCNSSR 240

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           +     L+++M    ++PN I+++ L+DA   +G V
Sbjct: 241 WSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKV 276


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 23/249 (9%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           I   C+    ++ F  F + F         LR  DA        N++    +I  C + G
Sbjct: 286 INSLCVSGNVELAFALFAQMF---------LRGCDA--------NIHTFTPLIKGCFMRG 328

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
              ++  +++ +       N+  +N+L++   +   L+  L+V   MQ+ G + ++ +Y+
Sbjct: 329 KLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYS 388

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           IL+     +G+ V A E +     + + G  + +V TY+ +V V      +  A  + E 
Sbjct: 389 ILIDGFAKSGDLVGASETW---NRMISHGC-RPNVVTYTCMVDVLCKNSMFDQANSLVEK 444

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M   G TPNT+T+++ I      G VE AM L E M   GC PN    N LL A     +
Sbjct: 445 MTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNK 504

Query: 449 FDRAFRLFR 457
           ++ AF LF+
Sbjct: 505 YEEAFGLFQ 513



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 126/307 (41%), Gaps = 77/307 (25%)

Query: 291 IYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           + ++N L++    + KF +   +Y NM+K G++ ++ +YNILLKA C       A +++ 
Sbjct: 144 VRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFV 203

Query: 349 EVKH--------------------------LEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           E+ +                           E  G  K  V  Y+ ++         ++A
Sbjct: 204 EMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVA 263

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +K+  +M+  GV PN +++S +IN+   +G VE A  LF +M   GC+ N      L++ 
Sbjct: 264 IKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKG 323

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
           C     F R  +L+ +  L K  +  G                                 
Sbjct: 324 C-----FMRG-KLYEALDLWKLMIQDG--------------------------------- 344

Query: 503 SSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGG 560
                    +P    YN L+   C++    +AL   ++M+  G  PN  +++ILID    
Sbjct: 345 --------CEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAK 396

Query: 561 SGNVEGA 567
           SG++ GA
Sbjct: 397 SGDLVGA 403



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 100/202 (49%), Gaps = 10/202 (4%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYEDLRS 284
            +  F K  DLV A   ++    H   PN+     ++DV  +C + M  ++ ++ E +  
Sbjct: 390 LIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDV--LCKNSMFDQANSLVEKMTL 447

Query: 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           +  T N   FN+ +        +++ +++ + MQ  G + ++ +YN LL A         
Sbjct: 448 EGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKY-- 505

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
            +E +G  + +EA+  L+ ++ TY+T++  F+ A     AL++    L  G  P++IT++
Sbjct: 506 -EEAFGLFQEIEARN-LQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYN 563

Query: 403 SLINACANAGLVEQAMHLFEEM 424
           ++I+A    G V+ A  L E +
Sbjct: 564 TMIHAYCKQGKVKIAAQLVERV 585



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 10/212 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P++ +   +ID  G+C +     AI    ++    V  N+  ++ ++N    + +++   
Sbjct: 242 PSVPVYNALID--GMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAF 299

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            ++  M   G  A++ ++  L+K C + G    A +++     L  +   + +V  Y+T+
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLW----KLMIQDGCEPNVVAYNTL 355

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         + AL+V + M  +G  PN  T+S LI+  A +G +  A   +  M+  GC
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
            PN      ++    +   FD+A  L    TL
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTL 447



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 95/208 (45%), Gaps = 6/208 (2%)

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           L  AL+  D  ++    PN+     +ID     GD + +   +  + S     N+  +  
Sbjct: 365 LEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTC 424

Query: 297 LMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           +++V   +  F     + + M   G   +  ++N  +K  C  G    A ++   ++ ++
Sbjct: 425 MVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKL---LERMQ 481

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
             G L  ++ TY+ ++        ++ A  + +++ +  + PN +T+++++   + AG++
Sbjct: 482 GHGCLP-NITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMM 540

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            +A+ LF + L  G  P+S   N ++ A
Sbjct: 541 GEALQLFGKALVRGTAPDSITYNTMIHA 568


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 11/241 (4%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           +VP   I F + V  F +  +L  AL  ++  K     P+  I   +I+  G C   D  
Sbjct: 360 VVPDL-ISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILIN--GYCRNDDVS 416

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
            +  +  ++  +   +++  +N+L+N       L    E++K M + GV  D  +   L+
Sbjct: 417 GALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLI 476

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C  GN   A  ++ E   L +   LK DV TY+T++  F      + A ++  DM+S
Sbjct: 477 HGYCKDGNMTKALSLF-ETMTLRS---LKPDVVTYNTLMDGFCKVGEMEKAKELWYDMIS 532

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
             + P+ I++S LIN   + GLV +A  L++EM + G +P    CN +++  + A    +
Sbjct: 533 REIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSK 592

Query: 452 A 452
           A
Sbjct: 593 A 593



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 140/347 (40%), Gaps = 66/347 (19%)

Query: 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIY--------------------------VFNS 296
           +D  G+    M+ + +Y DL + N  +N Y                           +N+
Sbjct: 240 LDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNA 299

Query: 297 LMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           L+N    +  +     V   M  +G+  + A++N +L   C   +   A+ ++ E+    
Sbjct: 300 LINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQ-- 357

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            +GV+  D+ ++S+IV VF+       AL   E M   G+ P+T+ ++ LIN       V
Sbjct: 358 -RGVVP-DLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDV 415

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS----------WTLSKT 464
             A+ +  EM++ GC  +    N LL         D A  LF+           +TL  T
Sbjct: 416 SGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTL--T 473

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
            +  G   DGN  +  ++                   + +   R S KP   TYN LM  
Sbjct: 474 TLIHGYCKDGNMTKALSL-------------------FETMTLR-SLKPDVVTYNTLMDG 513

Query: 525 CCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            C   +  + K L  +M +  + P++IS++ILI+     G V  A +
Sbjct: 514 FCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFR 560



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 107/233 (45%), Gaps = 10/233 (4%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRS 284
            +  + K  ++  AL  ++        P++    T++D  G C  G+  K++ ++ D+ S
Sbjct: 475 LIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMD--GFCKVGEMEKAKELWYDMIS 532

Query: 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           + +  +   F+ L+N   +   +     ++  M++ G+   + + N ++K    AGN   
Sbjct: 533 REIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSK 592

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A +    +  + ++GV   D  TY+T++  F   + +  A  +  +M   G+ PN +T++
Sbjct: 593 ANDF---LNTMISEGVPP-DCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYN 648

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           +++   +  G +++A  +  +M+  G  P+      L+   V       AFR+
Sbjct: 649 AILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRV 701



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 92/186 (49%), Gaps = 17/186 (9%)

Query: 257 YICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           YI  +I+ + G C   + S A  ++++++ + +   +   N+++   + A +L    +  
Sbjct: 539 YISFSIL-INGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFL 597

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE----VKHLEAKGVLKLDVFTYST 368
             M   GV  D  +YN L+       N+ + +E +      + ++E +G+L  ++ TY+ 
Sbjct: 598 NTMISEGVPPDCITYNTLI-------NSFVKEENFDRAFFLINNMEERGLLP-NLVTYNA 649

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I+  F+     Q A  V   M+  G+ P+  T++SLIN   +   +++A  + +EMLQ G
Sbjct: 650 ILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRG 709

Query: 429 CEPNSQ 434
             P+ +
Sbjct: 710 FVPDDK 715


>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 53/255 (20%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M+  G+ AD+ +YN LL AC   G   L  E     + +   G+L  D+ TYS +V+ F 
Sbjct: 1   MRHEGIQADIVTYNTLLSACARRG---LGDEAEMVFRTMNEGGILP-DITTYSYLVETFG 56

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                +   ++ ++M S G  P+  +++ L+ A A +G +++AM +F +M  AGC PN+ 
Sbjct: 57  KLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAA 116

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             +ILL       ++D    LF    +S T+                             
Sbjct: 117 TYSILLNLYGRHGRYDDVRDLFLEMKVSNTE----------------------------- 147

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWT 552
                             P   TYNIL+       Y   V  L ++M    + PN  ++ 
Sbjct: 148 ------------------PNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYE 189

Query: 553 ILIDACGGSGNVEGA 567
            LI ACG  G  E A
Sbjct: 190 GLIFACGKGGLHEDA 204



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 132/321 (41%), Gaps = 55/321 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P++     +++  G      K   + +++ S     +I  +N L+  +A    +K  + V
Sbjct: 43  PDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGV 102

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ MQ  G + + A+Y+ILL      G     ++++ E+K    +     +  TY+ ++ 
Sbjct: 103 FRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEP----NAATYNILIN 158

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           VF +  +++  + +  DM+   V PN  T+  LI AC   GL E A  +   M + G  P
Sbjct: 159 VFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVP 218

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +S+    +++A  +A  ++ A   F                                   
Sbjct: 219 SSKAYTGVIEAYGQAALYEEALVAF----------------------------------- 243

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSPNHI 549
           NT N V +            KPT  TYN  I M A    Y   +A++ +M   G++ N  
Sbjct: 244 NTMNEVGS------------KPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRD 291

Query: 550 SWTILIDACGGSGNVEGALQC 570
           ++  +I+A    G  E A++ 
Sbjct: 292 TFNGVIEAFRQGGQFEEAIKA 312



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 6/205 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           PN      ++++ G  G Y   R ++ +++  N   N   +N L+NV       K  + +
Sbjct: 113 PNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTL 172

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           + +M +  V  +M +Y  L+ AC   G    A++I   + H+  KGV+      Y+ +++
Sbjct: 173 FHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKI---LLHMNEKGVVPSSK-AYTGVIE 228

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +  A  ++ AL     M   G  P   T++SLI   A  GL +++  +  +M Q+G   
Sbjct: 229 AYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVAR 288

Query: 432 NSQCCNILLQACVEACQFDRAFRLF 456
           N    N +++A  +  QF+ A + +
Sbjct: 289 NRDTFNGVIEAFRQGGQFEEAIKAY 313



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 14/251 (5%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           +VP +   +   +  +G+      AL A++   +  S P +    ++I +    G Y +S
Sbjct: 216 VVPSSKA-YTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKES 274

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKA 333
            AI   +    V  N   FN ++       +F   ++ Y  M+K     D  +   +L  
Sbjct: 275 EAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSV 334

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C AG    ++E +GE+K L   G+L   V  Y  ++ V+A A  W  A ++ ++M +  
Sbjct: 335 YCFAGLVEESEEQFGEIKAL---GILP-SVMCYCMMLAVYAKADRWDDAHQLLDEMFTNR 390

Query: 394 VTPNTITWSSLINAC----ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
           V+        +I       +N  +VE   ++FE++   GC    +  N LL+A     Q 
Sbjct: 391 VSNIHQVIGQMIRGDYDDDSNWQMVE---YVFEKLKSEGCSLGVRFYNTLLEALWWLGQK 447

Query: 450 DRAFRLFRSWT 460
           +RA R+    T
Sbjct: 448 ERATRVLNEAT 458



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 124/285 (43%), Gaps = 14/285 (4%)

Query: 206 DVNLAIRYACIVPRADI--LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263
           D+ L ++ +   P A    +  N   E G  +++V+    +D  ++++  PNM     +I
Sbjct: 136 DLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLF--HDMVEENVE-PNMETYEGLI 192

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVM 321
             CG  G +  ++ I   +  + V  +   +  ++        +   L  +  M ++G  
Sbjct: 193 FACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSK 252

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
             + +YN L++     G   L +E    +  +   GV + +  T++ +++ F     ++ 
Sbjct: 253 PTVETYNSLIQMFAKGG---LYKESEAILLKMGQSGVAR-NRDTFNGVIEAFRQGGQFEE 308

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A+K   +M  A   P+  T  ++++    AGLVE++   F E+   G  P+  C  ++L 
Sbjct: 309 AIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLA 368

Query: 442 ACVEACQFDRAFRLFRSW---TLSKTQVALGEDYDGNTDRISNME 483
              +A ++D A +L        +S     +G+   G+ D  SN +
Sbjct: 369 VYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGDYDDDSNWQ 413


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 32/286 (11%)

Query: 203 NKPDV---NLAIRYACIVPRAD--ILFCNFVREFGKK----------RDLVSALRAYDAS 247
           +KPDV   N+ I   C   R D  I F N +  +G +          R + S  R  DA 
Sbjct: 225 SKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAE 284

Query: 248 K------KHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN 299
           K      +   SP++     +I+   +C   +  RAI   E +     T N   +N L++
Sbjct: 285 KLLSDMLRKGCSPSVVTFNILINF--LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLH 342

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
               + K    +E    M   G   D+ +YN LL A C  G   +A EI   +  L +KG
Sbjct: 343 GFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEI---LNQLSSKG 399

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
              + + TY+T++   +     + A+K+ ++M   G+ P+ IT+SSL++  +  G V++A
Sbjct: 400 CSPV-LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEA 458

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           +  F ++   G  PN+   N ++    ++ Q DRA   F ++ +SK
Sbjct: 459 IKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID-FLAYMISK 503



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 108/263 (41%), Gaps = 53/263 (20%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +++   M+  G   D+ +YN+L+   C  G      E    + ++ + G  + +V T++ 
Sbjct: 214 MKLLDEMRNKGSKPDVVTYNVLINGICKEGR---LDEAIKFLNNMPSYGC-QPNVITHNI 269

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I++       W  A K+  DML  G +P+ +T++ LIN     GL+ +A+ + E+M   G
Sbjct: 270 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 329

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           C PNS   N LL    +  + DRA                             +E+ D  
Sbjct: 330 CTPNSLSYNPLLHGFCKEKKMDRA-----------------------------IEYLDI- 359

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
                   V    Y          P   TYN L+ A C D     A  ++N++ + G SP
Sbjct: 360 -------MVSRGCY----------PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSP 402

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
             I++  +ID     G  E A++
Sbjct: 403 VLITYNTVIDGLSKVGKTERAIK 425



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 113/247 (45%), Gaps = 21/247 (8%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + +++ G + D+ +YN+L+   C +G      EI   ++ L+   V   DV TY+TI+
Sbjct: 114 VMEILEQSGAVPDVITYNVLISGYCKSG------EIDNALQVLDRMNVAP-DVVTYNTIL 166

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +   D+   + A++V +  L     P+ IT++ LI A      V QAM L +EM   G +
Sbjct: 167 RTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSK 226

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P+    N+L+    +  + D A +   +             Y    + I++  +   +S+
Sbjct: 227 PDVVTYNVLINGICKEGRLDEAIKFLNNM----------PSYGCQPNVITH--NIILRSM 274

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNH 548
            +T  ++      S   R    P+  T+NIL+   C      +A  ++ +M   G +PN 
Sbjct: 275 CSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNS 334

Query: 549 ISWTILI 555
           +S+  L+
Sbjct: 335 LSYNPLL 341



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 13/208 (6%)

Query: 242 RAYDASKK---HLSSPNMYICRTIIDVCGICGDYMKSRAI-YEDLR-SQNVTLNIYVFNS 296
           RA D  +K   H  +PN      ++   G C +    RAI Y D+  S+    +I  +N+
Sbjct: 317 RAIDILEKMPMHGCTPNSLSYNPLLH--GFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNT 374

Query: 297 LMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           L+     D K    +E+   +   G    + +YN ++      G T  A ++  E++   
Sbjct: 375 LLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRR-- 432

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            KG LK D+ TYS++V   +       A+K   D+   G+ PN IT++S++     +   
Sbjct: 433 -KG-LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQT 490

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           ++A+     M+   C+P      IL++ 
Sbjct: 491 DRAIDFLAYMISKRCKPTEATYTILIEG 518


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 118/279 (42%), Gaps = 55/279 (19%)

Query: 290 NIYVFNSLMNVNAHDLKFTLE--VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +++V+N+L+N    D KF     ++K M + G+ A+  +Y+IL+ + C  G    A    
Sbjct: 365 SLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFL 424

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
           G++        +K+ V+ Y++++           A+   ++M+  G+ P  ++++SLI+ 
Sbjct: 425 GKM----IMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISG 480

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
             N G + +A  L+ EM   G  PN+     L+ A   A +   AFRLF           
Sbjct: 481 YCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEML------- 533

Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
                                      N +PN                 TYN++++  C 
Sbjct: 534 -------------------------EQNMMPNE---------------VTYNVMIEGHCK 553

Query: 528 DYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           +   VKA  L+N+M   GL P+  ++  LI +   +G V
Sbjct: 554 EGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRV 592



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 143/325 (44%), Gaps = 66/325 (20%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P+ Y  R +I      G   +++   +DL  ++  LN   +++L++    +  L+  L V
Sbjct: 574 PDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGV 633

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M K GV  D+  Y +L+       +T     ++G +K++  +  L+ D   Y++++ 
Sbjct: 634 CREMVKRGVDMDLVCYAVLIDGTIKEQDT---SAVFGLLKNMHDQR-LRPDKVIYTSMID 689

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            ++ A   + A  + + M+  G TPN +T+++LIN    AGL+++A  L++EML +   P
Sbjct: 690 GYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTP 749

Query: 432 N--SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD--K 487
           N  + CC   L         ++A +L                            H D  K
Sbjct: 750 NHVTYCC--FLDHLAREGSMEKAVQL----------------------------HNDMLK 779

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK---ALMNEMRTVGL 544
             + NT                       +YNIL++  C    RV+    L++EM    +
Sbjct: 780 GLLANT----------------------VSYNILVRGFCK-LGRVEEATKLLDEMIDNAI 816

Query: 545 SPNHISWTILIDACGGSGNVEGALQ 569
            P+ I+++ +I  C   GN++GA++
Sbjct: 817 FPDCITYSTIIYQCCRRGNLDGAIE 841



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 142/336 (42%), Gaps = 20/336 (5%)

Query: 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285
           + V    +K  +V A    +  KK  + P++++   +I+     G + ++  +++++  +
Sbjct: 336 SLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEK 395

Query: 286 NVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            +  N   ++ L++      K    ++    M   G+   +  YN L+   C  GN   A
Sbjct: 396 GLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAA 455

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
              + E   +  KG LK  V +Y++++  + +      A ++  +M   G+ PNT T+++
Sbjct: 456 VSFFDE---MIDKG-LKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTT 511

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           LI+A   A  +  A  LF+EML+    PN    N++++   +     +AF L        
Sbjct: 512 LISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQM---- 567

Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
            Q  L  D       IS++    +  +     F+ + H      R  FK     Y+ L+ 
Sbjct: 568 VQKGLVPDTYTYRPLISSLCSTGR--VCEAKKFIDDLH------REHFKLNEMCYSALLH 619

Query: 524 ACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDA 557
             C +     AL    EM   G+  + + + +LID 
Sbjct: 620 GYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDG 655



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 104/214 (48%), Gaps = 7/214 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +++ + +  + K   +  A   +D       +PN+    T+I+     G   K+  ++++
Sbjct: 682 VIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKE 741

Query: 282 LRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +   N T N   +   ++  A +  ++  ++++ +M K G++A+  SYNIL++  C  G 
Sbjct: 742 MLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLANTVSYNILVRGFCKLGR 800

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++  E+        +  D  TYSTI+           A++  + ML+ G+ P+T+
Sbjct: 801 VEEATKLLDEM----IDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTL 856

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
            ++ LI  C  AG + +A  L ++M++ G +PN 
Sbjct: 857 AYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQ 890



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 96/257 (37%), Gaps = 31/257 (12%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN+L+   C       A EI      L  KG+   +V TY T+V      + +++   V 
Sbjct: 264 YNVLIHGLCKNKRVWEAVEIKNG---LIQKGLTASEV-TYCTLVLGLCKVQEFEVGAGVM 319

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           ++M+  G  P     SSL+      G V  A  L   + + G  P+    N L+ +  + 
Sbjct: 320 DEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKD 379

Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ------------SITNTP 494
            +FD A  LF+     K   A    Y    D        D               IT  P
Sbjct: 380 GKFDEAELLFKEMG-EKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYP 438

Query: 495 -NFVPNSH---------YSSFDKRF--SFKPTTTTYNILMKACCTD--YYRVKALMNEMR 540
            N + N H          S FD+      KPT  +Y  L+   C     +    L +EM 
Sbjct: 439 YNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMT 498

Query: 541 TVGLSPNHISWTILIDA 557
             G++PN  ++T LI A
Sbjct: 499 GKGIAPNTYTFTTLISA 515



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/182 (19%), Positives = 78/182 (42%), Gaps = 7/182 (3%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            + +++  Q +  +  ++ S+++    A  +K    ++  M   G   ++ +Y  L+   
Sbjct: 667 GLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINEL 726

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C AG    A+ ++ E+    +      +  TY   +   A     + A+++  DML  G+
Sbjct: 727 CKAGLMDKAELLWKEMLVSNSTP----NHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GL 781

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             NT++++ L+      G VE+A  L +EM+     P+    + ++  C      D A  
Sbjct: 782 LANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIE 841

Query: 455 LF 456
            +
Sbjct: 842 FW 843


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 141/357 (39%), Gaps = 59/357 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           I + + +  + K  +L  AL      ++   +P +    T+ID  G C  GD  ++R + 
Sbjct: 379 ITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLID--GYCRLGDLAEARRLK 436

Query: 280 EDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E++  Q    ++  +  LMN +    +L    E +  M   G+  D  +YN  + A    
Sbjct: 437 EEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTL 496

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            +T +A ++  EV  L  KG+   D  TY+ I+         + A ++K  M+S G+ P+
Sbjct: 497 SSTPMAFQLR-EVMML--KGIYP-DTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPD 552

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            IT++ LI+A    GL+ +A  L   M+  G +P+     IL+  C        A+  FR
Sbjct: 553 CITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFR 612

Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
                                                                 +P   T
Sbjct: 613 KML-----------------------------------------------DVGIEPNEIT 625

Query: 518 YNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
           YN+L+ A C       A    +EM   GL+PN  ++T+LID     GN   A++  F
Sbjct: 626 YNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYF 682



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 106/253 (41%), Gaps = 49/253 (19%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M+  G+M  + +YN ++           AQ  + E++   A G+L  DV TY++++  + 
Sbjct: 334 MENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMR---AMGLLP-DVITYNSLLNRYC 389

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            A   + AL +  D+  AG+ P  +T+++LI+     G + +A  L EEM++ GC P+  
Sbjct: 390 KAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVC 449

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
              IL+    +      A R F    LSK    L  D      RI       + ++++TP
Sbjct: 450 TYTILMNGSRKVRNLAMA-REFFDEMLSK---GLQPDCFAYNTRICA-----ELTLSSTP 500

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTIL 554
                          +F+                      L   M   G+ P+ +++ ++
Sbjct: 501 --------------MAFQ----------------------LREVMMLKGIYPDTVTYNVI 524

Query: 555 IDACGGSGNVEGA 567
           ID    +GN++ A
Sbjct: 525 IDGLCKTGNLKDA 537



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTL 309
           P+      IID  G+C  G+   ++ +   + S  +  +   +  L++ +     L+   
Sbjct: 516 PDTVTYNVIID--GLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREAR 573

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   M   G+   + +Y IL+  CC  GN   A   YG  + +   G+   ++ TY+ +
Sbjct: 574 KLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSA---YGWFRKMLDVGIEPNEI-TYNVL 629

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +          +A +   +ML  G+ PN  T++ LI+     G    A+ L+ EM Q G 
Sbjct: 630 IHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGI 689

Query: 430 EPNSQCCNILLQA 442
            P+    N L + 
Sbjct: 690 PPDYCTHNALFKG 702



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 147/397 (37%), Gaps = 101/397 (25%)

Query: 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN- 299
           L A+     H  +P++  C  ++ V      +   RA+Y ++    V   I  +N+L++ 
Sbjct: 187 LAAFRLVTCHGVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDS 246

Query: 300 -----------------------VNAHDLKFTLEV--------------YKNMQKLGVMA 322
                                   + +D+ F + +                +  +L   A
Sbjct: 247 FLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSKKA 306

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF--------A 374
              +YN L+ A    G    A+ +  E   +E +G++   V TY+ I+           A
Sbjct: 307 SSFTYNPLITALLERGFVRKAEALQME---MENEGIMP-TVVTYNAIIHGLLKCEQAEAA 362

Query: 375 DAKWWQM---------------------------ALKVKEDMLSAGVTPNTITWSSLINA 407
             K+ +M                           AL +  D+  AG+ P  +T+++LI+ 
Sbjct: 363 QVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDG 422

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
               G + +A  L EEM++ GC P+     IL+    +      A R F    LSK    
Sbjct: 423 YCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMA-REFFDEMLSK---G 478

Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR-----FSFKPTTTTYNILM 522
           L  D      RI       + ++++TP         +F  R         P T TYN+++
Sbjct: 479 LQPDCFAYNTRICA-----ELTLSSTP--------MAFQLREVMMLKGIYPDTVTYNVII 525

Query: 523 KACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
              C   +    K L  +M + GL P+ I++T LI A
Sbjct: 526 DGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHA 562


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 152/340 (44%), Gaps = 34/340 (10%)

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           +AL  Y    ++  SPN+     +I + G+ G + +   +++DLRS     ++  +N+L+
Sbjct: 379 AALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLL 438

Query: 299 NV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
            V   N  D + +  V+K M+K G + +  +Y  L+ +    G    A EIY   K +  
Sbjct: 439 AVFGQNGLDSEVS-GVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIY---KRMIE 494

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
            G+   D+ TY+ ++   A    W  A K+  +M      P+ +++SSL++A ANA  ++
Sbjct: 495 AGIYP-DISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLD 553

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILL---QACVEACQFDRAFRLFRSWTLS---KTQVALG 469
           +   L E++     EP++     L+          + ++AF+  R    S       A+ 
Sbjct: 554 KMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMV 613

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCT 527
             Y  N      M  K ++ +T               K  S   +  TYN LM   +   
Sbjct: 614 SIYGKN-----KMVKKVEEVLT-------------LMKENSINHSAATYNSLMHMYSRLG 655

Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           D  + +A++ E+++ G+ P+  S+  +I A G  G ++ A
Sbjct: 656 DCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEA 695



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 104/221 (47%), Gaps = 8/221 (3%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A + +D  K     P+     +++DV G    + ++  + + + +   T ++  +NSL++
Sbjct: 275 AAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLIS 334

Query: 300 VNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
               D  L+  LE+ + M+  G+  D+ +Y  L+      G    A   Y E+     + 
Sbjct: 335 AYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEM----VRN 390

Query: 358 VLKLDVFTYSTIVKVFA-DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
               ++ TY+ ++K+     K+ +M + V +D+ SAG  P+ +TW++L+      GL  +
Sbjct: 391 GCSPNLCTYNALIKMHGVRGKFTEMMI-VFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSE 449

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
              +F+EM +AG  P       L+ +      FD+A  +++
Sbjct: 450 VSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYK 490



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 10/175 (5%)

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           L + NV L++Y   S M+V     K  + +  +M++ G+  D  +YN L+  C   G   
Sbjct: 220 LVTYNVVLHVY---SKMSV---PWKEVVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYR 273

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A +++ E+K   A G  + D  T+++++ V+  A+  + A+ V + M +AG TP+ +T+
Sbjct: 274 EAAQMFDEMK---AAG-FEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTY 329

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +SLI+A    GL+E+A+ L +EM   G +P+      L+       + D A   +
Sbjct: 330 NSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATY 384



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 87/175 (49%), Gaps = 24/175 (13%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           + + ++   + L+ Y +N+L++        +   +++  M+  G   D  ++N LL    
Sbjct: 243 LVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLL---- 298

Query: 336 LAGNTVLAQEIYGEVK-HLEAKGVLK--------LDVFTYSTIVKVFADAKWWQMALKVK 386
                    ++YG+ + H EA GVLK          V TY++++  +      + AL++K
Sbjct: 299 ---------DVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELK 349

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           ++M   G+ P+ +T+++LI+     G ++ A+  + EM++ GC PN    N L++
Sbjct: 350 QEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIK 404



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 6/188 (3%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVY 312
           + Y   T+I  C   G Y ++  +++++++     +   FNSL++V   A   +  + V 
Sbjct: 255 DRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVL 314

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           K M+  G    + +YN L+ A    G   L +E     + +E +G +K DV TY+T++  
Sbjct: 315 KKMENAGCTPSVVTYNSLISAYVKDG---LLEEALELKQEMEFRG-MKPDVVTYTTLISG 370

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                    AL    +M+  G +PN  T+++LI      G   + M +F+++  AG  P+
Sbjct: 371 LDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPD 430

Query: 433 SQCCNILL 440
               N LL
Sbjct: 431 VVTWNTLL 438



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 96/191 (50%), Gaps = 6/191 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P+ ++ +T++ V        ++   +++LR +  +L+I V N+++++   +  +K   EV
Sbjct: 569 PHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEV 628

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              M++  +    A+YN L+      G+    + I  E+K       ++ D ++Y+T++ 
Sbjct: 629 LTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIK----SSGMRPDRYSYNTVIY 684

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +      + A ++  +M  +GV P+ +T++  I +     + E+A+ L   ++  GC+P
Sbjct: 685 AYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKP 744

Query: 432 NSQCCNILLQA 442
           N +  N +L+ 
Sbjct: 745 NERTYNSILEG 755



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 98/249 (39%), Gaps = 54/249 (21%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AKWWQM 381
           D ++Y  L+     AG    A  ++  +      G ++  + TY+ ++ V++  +  W+ 
Sbjct: 184 DASAYTALVSEFSRAGRFRDAVAVFRRM----VDGGVQPALVTYNVVLHVYSKMSVPWKE 239

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
            + + + M   G+  +  T+++LI+ C   GL  +A  +F+EM  AG EP+    N LL 
Sbjct: 240 VVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLD 299

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              +A + + A  + +                        ME+                 
Sbjct: 300 VYGKARRHEEAIGVLK-----------------------KMENA---------------- 320

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACG 559
                      P+  TYN L+ A   D    +A  L  EM   G+ P+ +++T LI    
Sbjct: 321 --------GCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLD 372

Query: 560 GSGNVEGAL 568
             G ++ AL
Sbjct: 373 RIGKIDAAL 381



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 94/186 (50%), Gaps = 6/186 (3%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K +A+ ED+ +Q +  + ++  +L+ VN   + L  T + ++ +++     D+   N+L 
Sbjct: 554 KMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDI---NVLN 610

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
               + G   + +++  EV  L  +  +     TY++++ +++     +    +  ++ S
Sbjct: 611 AMVSIYGKNKMVKKV-EEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKS 669

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
           +G+ P+  +++++I A    G +++A  LF EM  +G +P+    NI +++ V    F+ 
Sbjct: 670 SGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEE 729

Query: 452 AFRLFR 457
           A  L R
Sbjct: 730 AIDLVR 735



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/177 (19%), Positives = 82/177 (46%), Gaps = 7/177 (3%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301
           +A+   ++   S ++ +   ++ + G      K   +   ++  ++  +   +NSLM++ 
Sbjct: 592 KAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMY 651

Query: 302 AH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           +   D +    +   ++  G+  D  SYN ++ A    G    A  ++ E+K     GV 
Sbjct: 652 SRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK---CSGV- 707

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVE 415
           K D+ TY+  +K +     ++ A+ +   +++ G  PN  T++S++   C +  +VE
Sbjct: 708 KPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCRHGRMVE 764


>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
          Length = 950

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 107/233 (45%), Gaps = 6/233 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           IL+ N +  F    ++  A++     +K    P       II      GD  +S  +++ 
Sbjct: 553 ILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDM 612

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R       ++ FN L+N  V    ++  +E+   M   GV A+  +Y  +++     G+
Sbjct: 613 MRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGD 672

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A E +     L+ +G L +D+FTY  ++K    +   Q AL V ++M +  +  N+ 
Sbjct: 673 TGKAFEYF---TRLQNEG-LDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSF 728

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            ++ LI+  A  G V +A  L ++M + G +P+       + AC +A   +RA
Sbjct: 729 VYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRA 781



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 111/248 (44%), Gaps = 6/248 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           F   +    +KR +  A+   D       S N +    I+      GD  K+   +  L+
Sbjct: 625 FNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQ 684

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           ++ + ++I+ + +L+     +  ++  L V K M    +  +   YNIL+      G+  
Sbjct: 685 NEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVW 744

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A ++   ++ ++ +GV K D+ TY++ +   + A     A +  E+M + GV PN  T+
Sbjct: 745 EAADL---IQQMKKEGV-KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTY 800

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           ++LI   A A L E+A+  +EEM   G +P+    + LL + +       A+      T+
Sbjct: 801 TTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTI 860

Query: 462 SKTQVALG 469
            K  V  G
Sbjct: 861 CKEMVEAG 868



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 138/346 (39%), Gaps = 33/346 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P +     +I++    G   K+  +   ++ + V  N+  ++ ++N  V   D      
Sbjct: 479 TPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFA 538

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+++M K G+  D+  YN ++ A C  GN   A +   E++ L  +   +    T+  I+
Sbjct: 539 VFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTR----TFMPII 594

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +A +   + +L+V + M   G  P   T++ LIN       +E+A+ + +EM  AG  
Sbjct: 595 HGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVS 654

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG------NTDRI-SNME 483
            N      ++Q         +AF  F         V +   Y+        + R+ S + 
Sbjct: 655 ANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIF-TYEALLKACCKSGRMQSALA 713

Query: 484 HKDKQSITNTP--NFVPNSHYSSFDKRF---------------SFKPTTTTYNILMKAC- 525
              + S  N P  +FV N     + +R                  KP   TY   + AC 
Sbjct: 714 VTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACS 773

Query: 526 -CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
              D  R    + EM  +G+ PN  ++T LI     +   E AL C
Sbjct: 774 KAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSC 819



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 129/314 (41%), Gaps = 26/314 (8%)

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNM 315
           I  T++D   +  D  K   +++ L+    T  +  +  L+N+     K +  LEV + M
Sbjct: 449 IYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVM 508

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           ++ GV  ++ +Y++++       +   A  ++ ++     K  +K DV  Y+ I+  F  
Sbjct: 509 KEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VKEGMKPDVILYNNIISAFCG 564

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
                 A++  ++M      P T T+  +I+  A +G + +++ +F+ M + GC P    
Sbjct: 565 MGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHT 624

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH---KDKQSITN 492
            N L+   VE  Q ++A  +    TL+                +S  EH   K  Q   +
Sbjct: 625 FNGLINGLVEKRQMEKAVEILDEMTLAG---------------VSANEHTYTKIMQGYAS 669

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHIS 550
             +      Y +  +         TY  L+KACC       AL    EM    +  N   
Sbjct: 670 VGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFV 729

Query: 551 WTILIDACGGSGNV 564
           + ILID     G+V
Sbjct: 730 YNILIDGWARRGDV 743



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/379 (20%), Positives = 152/379 (40%), Gaps = 62/379 (16%)

Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFT 308
           +S P+      ++   G  GD  ++R  +E +R++ +T    ++ SL++  A   D+   
Sbjct: 302 ISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEA 361

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNT---------------VLAQEIYGE---- 349
           L   + M++ G+   + +Y++++     AG+                 L   IYG+    
Sbjct: 362 LSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYA 421

Query: 350 -------------VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
                        V+ +E +G+    +  Y T++  +      +  L V + +   G TP
Sbjct: 422 HCQTCNMERAEALVREMEEEGI-DAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTP 480

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             +T+  LIN     G + +A+ +   M + G + N +  ++++   V+   +  AF +F
Sbjct: 481 TVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVF 540

Query: 457 RSWTLS--KTQVALGEDYD------GNTDRISNMEHKDKQSITNTP---NFVP--NSHYS 503
                   K  V L  +        GN DR      K+ Q + + P    F+P  + +  
Sbjct: 541 EDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTV-KEMQKLRHRPTTRTFMPIIHGYAK 599

Query: 504 SFDKRFSFK-----------PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHIS 550
           S D R S +           PT  T+N L+          KA  +++EM   G+S N  +
Sbjct: 600 SGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHT 659

Query: 551 WTILIDACGGSGNVEGALQ 569
           +T ++      G+   A +
Sbjct: 660 YTKIMQGYASVGDTGKAFE 678


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 141/327 (43%), Gaps = 36/327 (11%)

Query: 253 SPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFT 308
           SPN+    T++   G+C    + ++  +  ++  ++  L+   FN L++    +  +   
Sbjct: 319 SPNVVCYNTLLK--GLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRV 376

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +EV + M + G M D+ +Y  ++   C  G   L  E    ++ + A G  + +  +Y+ 
Sbjct: 377 IEVLEQMLEHGCMPDVITYTTVINGFCKEG---LIDEAVMLLRSMAACGC-RPNTVSYTI 432

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++K    A+ W  A ++   M+  G  PN +T+++LIN     GLVEQA+ L ++ML  G
Sbjct: 433 VLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 492

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRIS 480
           C P+    + ++    +A   D A  L            T+  + +A     +G  +++ 
Sbjct: 493 CSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVI 552

Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMR 540
            M    + +   +   + N+  SS  KR                  TD  R    +  M 
Sbjct: 553 QMFENIQDTTVRSDAVLYNAVISSLCKRGE----------------TD--RAIEFLAYMV 594

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGA 567
           + G  PN  ++TILI      G V+ A
Sbjct: 595 SSGCVPNESTYTILIRGLASEGFVKEA 621



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 36/304 (11%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACC 335
           + E++ +     NI  F++L+     +  F    EV+  M + G   D+  Y  ++   C
Sbjct: 239 LMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVC 298

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
                 +A+   G +  + + G L  +V  Y+T++K    A  W+ A  +  +M      
Sbjct: 299 KEERLEVAR---GILNRMPSYG-LSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCP 354

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            + +T++ L++     GLV++ + + E+ML+ GC P+      ++    +    D A  L
Sbjct: 355 LDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVML 414

Query: 456 FRSW--------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
            RS         T+S T V  G     + +R  + E    Q I                 
Sbjct: 415 LRSMAACGCRPNTVSYTIVLKGL---CSAERWVDAEELMSQMIQQ--------------- 456

Query: 508 RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
                P   T+N L+   C      +A  L+ +M   G SP+ IS++ +ID  G +GN +
Sbjct: 457 --GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTD 514

Query: 566 GALQ 569
            AL+
Sbjct: 515 EALE 518



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 127/314 (40%), Gaps = 29/314 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDL--RSQNVTLNIYVFNSLMNVNAHDLKFTLE 310
           +PN Y    ++      G    + A+ +D+  R    T  +Y         A   +  + 
Sbjct: 108 APNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVG 167

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V +++   G   D+ + N++L+A C  G      E    ++ L      + DV +Y+ ++
Sbjct: 168 VLRDLHGRGCALDVGNCNLVLQAVCDQGPV---DEAVRLLRDLLPSFGCEPDVVSYNAVL 224

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +    A+ W     + E+M++AG  PN +T+S+LI      GL E+   +  +M + GC 
Sbjct: 225 RGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCA 284

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFR---SWTLSKTQVALGEDYDG--NTDRISNMEHK 485
           P+ +    ++    +  + + A  +     S+ LS   V       G  + DR    E  
Sbjct: 285 PDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGL 344

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVG 543
             +                FDK         T+NIL+   C +    RV  ++ +M   G
Sbjct: 345 LAE---------------MFDKDCPLD--DVTFNILVDFLCQNGLVDRVIEVLEQMLEHG 387

Query: 544 LSPNHISWTILIDA 557
             P+ I++T +I+ 
Sbjct: 388 CMPDVITYTTVING 401



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 82/231 (35%), Gaps = 55/231 (23%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN ++   C AG    A+ +   V        +  + +TY  +V+          AL V 
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAASVP-------VAPNAYTYFPLVRALCARGRIADALAVL 134

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           +DM   G  P    +   + A   A     A+ +  ++   GC  +   CN++LQA  + 
Sbjct: 135 DDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQ 194

Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
              D A RL R                                     + +P+       
Sbjct: 195 GPVDEAVRLLR-------------------------------------DLLPS------- 210

Query: 507 KRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILI 555
             F  +P   +YN +++  C    +  V+ LM EM   G  PN ++++ LI
Sbjct: 211 --FGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLI 259


>gi|255661166|gb|ACU25752.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 426

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  VT N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 275

Query: 455 LFR 457
           LF+
Sbjct: 276 LFQ 278



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGVTPNT ++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRA 273



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 106/231 (45%), Gaps = 6/231 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  FGK+    +AL      ++     ++ +   +I++     DY K+ +I+  L+
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
               T ++  +N+++NV   A   +    +   M+  GV  + ASY+ LL         +
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  ++ E++ ++      LD+ T + ++ V+      + A K+   M   G+ PN +++
Sbjct: 132 EALSVFAEMREIKC----LLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           ++L+    +A L  +A+HLF  M +   E N    N ++    +  + ++A
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 98/202 (48%), Gaps = 10/202 (4%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  +  ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++   
Sbjct: 212 RKNIEQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKV 267

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S+GV  + + + ++I A    GLV  A  L  E+ +    P++   
Sbjct: 268 GKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERVGLVAHAKRLLHELKR----PDNIPR 323

Query: 437 NILLQACVEACQFDRAFRLFRS 458
           +I +     A + + A  +FR 
Sbjct: 324 DIAIHILAGAGRIEEATWVFRQ 345


>gi|255661132|gb|ACU25735.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 426

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  VT N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVTPNTASYSTLLTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 275

Query: 455 LFR 457
           LF+
Sbjct: 276 LFQ 278



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGVTPNT ++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENRKFLEALSVF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRA 273



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 106/231 (45%), Gaps = 6/231 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  FGK+    +AL      ++     ++ +   +I++     DY K+ +I+  L+
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
               T ++  +N+++NV   A   +    +   M+  GV  + ASY+ LL         +
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENRKFL 131

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  ++ E++ ++      LD+ T + ++ V+      + A K+   M   G+ PN +++
Sbjct: 132 EALSVFAEMREIKC----LLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           ++L+    +A L  +A+HLF  M +   E N    N ++    +  + ++A
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 109/234 (46%), Gaps = 7/234 (2%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +R A + P     +   +  + + R  + AL  +   ++     ++  C  +IDV G  G
Sbjct: 105 MRTAGVTPNT-ASYSTLLTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLG 163

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN 328
              ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ+  +  ++ +YN
Sbjct: 164 MAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYN 223

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++        A  + + 
Sbjct: 224 SMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKVGKLDRAAMLFQK 279

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           + S+GV  + + + ++I A   AGLV  A  L  E+ +    P     +IL  A
Sbjct: 280 LRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGA 333


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 81/353 (22%)

Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY-- 292
           +D++  LR   A++K L + N  I            D  ++  I + L+  +V L+ +  
Sbjct: 328 KDILKQLRWGPATEKALYNLNFSI------------DAYQANQILKQLQDHSVALSFFYW 375

Query: 293 ------------VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
                        + +++ +   A +     ++ + M K G   ++ +YN L+ +   A 
Sbjct: 376 LKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRAN 435

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A  ++ +++ +  +     D  TY T++ + A A +  +A+ + E M   G++P+T
Sbjct: 436 YLGEALNVFNQMQEMGCEP----DRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDT 491

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            T+S +IN    +G +  A  LF EM+  GC PN    NIL+    +A  +  A +L+R 
Sbjct: 492 FTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYR- 550

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
                                      D Q+                     FKP   TY
Sbjct: 551 ---------------------------DMQNA-------------------GFKPDKVTY 564

Query: 519 NILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +I+M+    C      +A+  EM+     P+   + +LID  G +GNVE A +
Sbjct: 565 SIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWE 617



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 107/235 (45%), Gaps = 7/235 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  +    K   L  A+  Y+  ++   SP+ +    +I+  G  G+   +  ++ +
Sbjct: 457 VTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCE 516

Query: 282 LRSQNVTLNIYVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q    NI  +N L  +   A + +  L++Y++MQ  G   D  +Y+I+++     G 
Sbjct: 517 MVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGY 576

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ ++ E+K    +     D   Y  ++ ++  A   + A +    ML AG+ PN  
Sbjct: 577 LEEAEAVFFEMK----QNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAGLLPNVP 632

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-CQFDRAF 453
           T +SL++A      +  A +L + M+  G  P+ Q   +LL  C EA   +D  F
Sbjct: 633 TCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCTEAQSPYDMGF 687



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 114/250 (45%), Gaps = 12/250 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  +G+   L  AL  ++  ++    P+     T+ID+    G    + ++YE 
Sbjct: 422 VTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYER 481

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++   ++ + + ++ ++N    + +L     ++  M   G + ++ +YNIL+     A N
Sbjct: 482 MQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARN 541

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++Y ++++       K D  TYS +++V     + + A  V  +M      P+  
Sbjct: 542 YQTALKLYRDMQN----AGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEP 597

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +  LI+    AG VE+A   +  ML+AG  PN   CN LL A      F R  RL  ++
Sbjct: 598 VYGLLIDLWGKAGNVEKAWEWYHAMLRAGLLPNVPTCNSLLSA------FLRVHRLPDAY 651

Query: 460 TLSKTQVALG 469
            L +  V LG
Sbjct: 652 NLLQNMVTLG 661


>gi|298710948|emb|CBJ32258.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 358

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 8/182 (4%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQK--LGVMADMASYNILLKA 333
           ++   R++ + ++  V++ +++V A   +++  +E+ +  ++   G+  +   Y   + A
Sbjct: 90  VFRRARARGMVMDNSVYSCIISVVAKSGRWSEAVELLQEAREDPAGLAPNKYCYTAAVSA 149

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
           C    N  LA  +  E++    +  L  D FTY + V   A    W+ AL +   M   G
Sbjct: 150 CARGRNWELALSLLDEMR----EAGLSPDHFTYGSAVSAMARTGQWRRALGLLGRMAGEG 205

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + PN + + + ++ACA  G  E+A+ L +EM  AG EP+  C N  + AC ++ +++ A 
Sbjct: 206 LQPNVVCYGAAVDACAKGGQWERAVGLLQEMGDAGVEPDRICYNAAINACAQSGEWETAL 265

Query: 454 RL 455
            L
Sbjct: 266 SL 267



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 77/154 (50%), Gaps = 2/154 (1%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           + +  ++V++  +  G++ D + Y+ ++     +G    A E+  E +  E    L  + 
Sbjct: 83  EWRGAVKVFRRARARGMVMDNSVYSCIISVVAKSGRWSEAVELLQEAR--EDPAGLAPNK 140

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
           + Y+  V   A  + W++AL + ++M  AG++P+  T+ S ++A A  G   +A+ L   
Sbjct: 141 YCYTAAVSACARGRNWELALSLLDEMREAGLSPDHFTYGSAVSAMARTGQWRRALGLLGR 200

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           M   G +PN  C    + AC +  Q++RA  L +
Sbjct: 201 MAGEGLQPNVVCYGAAVDACAKGGQWERAVGLLQ 234



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 130/302 (43%), Gaps = 36/302 (11%)

Query: 228 VREFGKKRDLVSALRAYDASKKH--LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285
           +++ G++ +   A++ +  ++    +   ++Y C  II V    G + ++  + ++ R  
Sbjct: 75  LKDMGRRFEWRGAVKVFRRARARGMVMDNSVYSC--IISVVAKSGRWSEAVELLQEARED 132

Query: 286 NVTL--NIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              L  N Y + + ++  A   + +  L +   M++ G+  D  +Y   + A    G   
Sbjct: 133 PAGLAPNKYCYTAAVSACARGRNWELALSLLDEMREAGLSPDHFTYGSAVSAMARTGQWR 192

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  + G +    A   L+ +V  Y   V   A    W+ A+ + ++M  AGV P+ I +
Sbjct: 193 RALGLLGRM----AGEGLQPNVVCYGAAVDACAKGGQWERAVGLLQEMGDAGVEPDRICY 248

Query: 402 SSLINACANAGLVEQAMHLFEEM------LQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           ++ INACA +G  E A+ L +EM      L  G  P+    N ++     A + +R   L
Sbjct: 249 NAAINACAQSGEWETALSLADEMRRSVPVLGTGAGPDVFTFNSIMHGMASAGECERLLVL 308

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
                       + E+Y+ + D +S   +    +  N P  +   H      RF+ +PT 
Sbjct: 309 L---------AEMREEYEVSPDVVS---YNTAMAACNEPALLYAQH------RFTGEPTD 350

Query: 516 TT 517
           +T
Sbjct: 351 ST 352


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 154/361 (42%), Gaps = 34/361 (9%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII-DVCGICGDYMKSRAIY 279
           DIL   ++RE G  +D   +L  +     +  +P++Y C  I+  +   C D +   +  
Sbjct: 127 DILIRVYLRE-GMIQD---SLEIFRLMGLYGFNPSVYTCNAILGSIVKSCED-VSVWSFL 181

Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLA 337
           +++  + +  ++  FN L+NV   +  F    Y  + M+K G    + +YN +L   C  
Sbjct: 182 KEMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKK 241

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A E+   + H+  KGV   DV TY+ ++     +        +  DM    + PN
Sbjct: 242 GRFKAAIEL---LDHMNLKGV-NADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPN 297

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +T+++L+N  +N G V  A  L  EML  G  PN    N L+   +    F  A ++F 
Sbjct: 298 EVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFH 357

Query: 458 ---SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
              +  L  T+V+ G   DG               +     F     +    KR      
Sbjct: 358 MMEAKGLIGTEVSYGVLLDG---------------LCKNAEFDLARGFYMRMKRNGVCVG 402

Query: 515 TTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA--LQC 570
             TY  ++   C + +  +A  ++NEM   G+ P+ ++++ LI+     G ++ A  + C
Sbjct: 403 RITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVC 462

Query: 571 R 571
           R
Sbjct: 463 R 463



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 135/310 (43%), Gaps = 22/310 (7%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
           P++     +I+V    G + KS  + + +        I  +N++++      +F   +E+
Sbjct: 191 PDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
             +M   GV AD+ +YN+L+   C +  +     +  +++    K ++  +  TY+T++ 
Sbjct: 251 LDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMR----KRMIHPNEVTYNTLLN 306

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F++     +A ++  +ML+ G++PN +T+++LI+   + G  ++A+ +F  M   G   
Sbjct: 307 GFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIG 366

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE-DYDGNTDRISNMEHKDKQSI 490
                 +LL    +  +FD A   +    + +  V +G   Y G  D +      D+  +
Sbjct: 367 TEVSYGVLLDGLCKNAEFDLARGFY--MRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVV 424

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNH 548
                            +    P   TY+ L+   C        K ++  +  VGLSPN 
Sbjct: 425 MLNEM-----------SKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNG 473

Query: 549 ISWTILIDAC 558
           I ++ LI  C
Sbjct: 474 IIYSTLIYNC 483



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 107/251 (42%), Gaps = 10/251 (3%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           I+P A    C  +  +G   + + A   +D   K    P  +   +++   G+C  G  +
Sbjct: 539 ILPNAVSFDC-LINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLK--GLCKGGHLI 595

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
            +    + L++    ++  + N+L+     + +L   + ++  M +  ++ D  +Y  L+
Sbjct: 596 AAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLI 655

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C  G TV+A       K  EA+G L  +   Y+  V     A  W+     ++ M  
Sbjct: 656 SGLCRKGKTVIAILF---AKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDK 712

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+T + +T +++I+  +  G +E+   L  EM      PN    NILL    +      
Sbjct: 713 LGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVST 772

Query: 452 AFRLFRSWTLS 462
           +F L+RS  LS
Sbjct: 773 SFMLYRSMILS 783



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 127/319 (39%), Gaps = 55/319 (17%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305
           +K +  PN     T+++     G  + +R +  ++ +  ++ N   FN+L++  ++  + 
Sbjct: 290 RKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNF 349

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           K  L+++  M+  G++    SY +LL   C      LA+  Y  +K     GV  +   T
Sbjct: 350 KEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKR---NGVC-VGRIT 405

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+ ++       +   A+ +  +M   G+ P+ +T+S+LIN     G ++ A  +   + 
Sbjct: 406 YTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIY 465

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
           + G  PN    + L+  C          R++ +  L           +GNT         
Sbjct: 466 RVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMIL-----------EGNT--------- 505

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVG 543
                                      P   T+N+L+ + C      +A   M  M + G
Sbjct: 506 ---------------------------PDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDG 538

Query: 544 LSPNHISWTILIDACGGSG 562
           + PN +S+  LI+  G SG
Sbjct: 539 ILPNAVSFDCLINGYGSSG 557



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 8/196 (4%)

Query: 267 GICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G+C +     A+    ++    +  +I  +++L+N       LK   E+   + ++G+  
Sbjct: 412 GLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSP 471

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           +   Y+ L+  CC  G       IY E   LE       D FT++ +V     A     A
Sbjct: 472 NGIIYSTLIYNCCRMGCLKETIRIY-EAMILEGN---TPDHFTFNVLVTSLCKAGKVAEA 527

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            +    M S G+ PN +++  LIN   ++G   +A  +F+EM + G  P       LL+ 
Sbjct: 528 EEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKG 587

Query: 443 CVEACQFDRAFRLFRS 458
             +      A +  +S
Sbjct: 588 LCKGGHLIAAEKFLKS 603



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH--LEAKGVLKLDVFTYSTIVKV 372
           M K G+  D+ +Y+ L+   C  G    A+EI   +    L   G++      YST++  
Sbjct: 429 MSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGII------YSTLIYN 482

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                  +  +++ E M+  G TP+  T++ L+ +   AG V +A      M   G  PN
Sbjct: 483 CCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPN 542

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWT 460
           +   + L+     + +  +AF +F   T
Sbjct: 543 AVSFDCLINGYGSSGEGLKAFSVFDEMT 570



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 4/154 (2%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           L+  L++ K     GV  D  ++N+L+  CC  G    A ++   V  + + G+  LD  
Sbjct: 805 LEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDM---VNVMTSLGI-SLDKN 860

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           T   IV V      +Q +  V  +M   G++P +  +  L+N     G ++ A  + EEM
Sbjct: 861 TCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEM 920

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +     P +   + +++A  +  + D A  L RS
Sbjct: 921 IAHKICPPNVAESAMVRALAKCGKADEASLLLRS 954



 Score = 38.9 bits (89), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 269  CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMAS 326
            CG   ++  +   +    +   I  F +LM++   +   T  LE+   M   G+  D+ S
Sbjct: 942  CGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVS 1001

Query: 327  YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV-KVFADAKWWQMALKV 385
            YN+L+   C  G+  +A E++ E+K     G L  +V TY  +V  + +    +     +
Sbjct: 1002 YNVLITGLCAKGDMAIAFELFEEMKR---DGFLA-NVTTYKALVGGILSQGTEFSGTDII 1057

Query: 386  KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
             +D+L+ G     ++++ +IN      +     HLF 
Sbjct: 1058 LKDLLARGFI-TAMSFNHMINFPQQISVNAYLKHLFH 1093


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 112/238 (47%), Gaps = 29/238 (12%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           K D  TY+ ++     A  W+ A+ + +DML A + P+  T+++LINAC ++G  ++A++
Sbjct: 194 KPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALN 253

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ-------------V 466
           + ++M + G  P+    NI+L A     Q+ +    F     +  +             V
Sbjct: 254 VCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLV 313

Query: 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH-YS----------SFDKRFS--FKP 513
            LG++     D  ++M+ K  +   +   F    H YS          +F+   +   KP
Sbjct: 314 KLGQNGKA-IDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKP 372

Query: 514 TTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              +YN L+ A  +     +A  + NE++  G  P+ +S+T L++A G SG  E A++
Sbjct: 373 NIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMK 430



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/313 (19%), Positives = 130/313 (41%), Gaps = 53/313 (16%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           P+      +I+ CG  G++ ++  + + +    V  ++   N +++      +++  L  
Sbjct: 230 PSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSY 289

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M+   +  D  + NI++      G    A +I+  +K  E +     DV T++TI+ 
Sbjct: 290 FELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMK--EKRSECYPDVVTFTTIIH 347

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +++     +        ML+ G+ PN +++++LI A A+ G+ ++A  +F E+ + G  P
Sbjct: 348 LYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHP 407

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +      LL A  ++ + ++A ++F                                   
Sbjct: 408 DVVSYTSLLNAYGKSGKPEKAMKVFE---------------------------------- 433

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHI 549
                          +R   KP   +YN L+ A  +     +A  +++EM   G+ PN +
Sbjct: 434 -------------LMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIV 480

Query: 550 SWTILIDACGGSG 562
           S   L+ ACG  G
Sbjct: 481 SICTLLAACGRCG 493



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/340 (19%), Positives = 132/340 (38%), Gaps = 59/340 (17%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           GK  D+ ++++     K+    P++    TII +  +CG     +  +  + ++ +  NI
Sbjct: 319 GKAIDIFNSMK----EKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNI 374

Query: 292 YVFNSLMNVNA-HDL-KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             +N+L+   A H + K    V+  ++K G   D+ SY  LL A   +G    A +++  
Sbjct: 375 VSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVF-- 432

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
              L  +   K ++ +Y+ ++  +        A+++  +M   GV PN ++  +L+ AC 
Sbjct: 433 --ELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACG 490

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
             G   +   +       G + N+   N  + + +   ++D+A  L+R+    K      
Sbjct: 491 RCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKV----- 545

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--T 527
                                                     KP   TYN+L+  CC  +
Sbjct: 546 ------------------------------------------KPDPVTYNVLISGCCKMS 563

Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            Y      ++EM  + +  +   ++ +I A    G V  A
Sbjct: 564 KYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEA 603



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 41/263 (15%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  +G K  L  A+      +++   PN+    T++  CG CG  +K +++      + 
Sbjct: 450 LIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRG 509

Query: 287 VTLNIYVFNS----LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC------- 335
           + LN   +NS     ++V  +D   +L  Y+ M+   V  D  +YN+L+  CC       
Sbjct: 510 IKLNTTAYNSAIGSYLSVGEYDKALSL--YRAMRTKKVKPDPVTYNVLISGCCKMSKYGE 567

Query: 336 --------LAGNTVLAQEIYGEV--------KHLEAKGVL--------KLDVFTYSTIVK 371
                   +     L++E+Y  V        +  EA+ +         + DV TY+ ++ 
Sbjct: 568 ALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIH 627

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +  A+ W+ A  +  +M +  V P++I  SSL+ A    G   + + L E M +     
Sbjct: 628 AYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPF 687

Query: 432 NSQCCNILLQACVEACQFDRAFR 454
           N    N      V AC   R +R
Sbjct: 688 N----NSSFFEMVSACSLLREWR 706



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 107/266 (40%), Gaps = 45/266 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID----------------- 264
           + + + +  +GK      A++ ++  +++   PN+     +ID                 
Sbjct: 410 VSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHE 469

Query: 265 ------------------VCGICGDYMKSRAIYEDLRSQNVTLNIYVFN----SLMNVNA 302
                              CG CG  +K +++      + + LN   +N    S ++V  
Sbjct: 470 MERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGE 529

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
           +D   +L  Y+ M+   V  D  +YN+L+  CC       A     E+  L+    + L 
Sbjct: 530 YDKALSL--YRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLK----IPLS 583

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
              YS+++  ++       A  +   M   G  P+ IT++++I+A   A   E+A  LF 
Sbjct: 584 KEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFL 643

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQ 448
           EM     +P+S  C+ L++A  +  Q
Sbjct: 644 EMETDDVQPDSIACSSLMRAFNKGGQ 669


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 27/235 (11%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           K D   Y++++   A A  W+ A+ + +DML A + P+  T++++INAC  AG  ++A+ 
Sbjct: 187 KPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALE 246

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR----------SWTLSKTQVALG 469
           L ++M + G  P+    NI+L A     Q+ +A   F           ++TL+     L 
Sbjct: 247 LCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLV 306

Query: 470 ED--YDGNTDRISNMEHKDKQSITNTPNF--VPNSHY---------SSFDKRFS--FKPT 514
           +D  Y    + +++M  K  Q   +   +  + +S+Y         + FD   +   KP 
Sbjct: 307 KDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPN 366

Query: 515 TTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             +YN L+ A  +      AL     ++  GL P+ +S+T L++A G SG  E A
Sbjct: 367 IVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKA 421



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 111/229 (48%), Gaps = 10/229 (4%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           ++G+  +L++++R     K+    P++    +I+    +CG     +A+++ + ++ V  
Sbjct: 310 QYGEAIELLNSMR----EKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKP 365

Query: 290 NIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           NI  +N+L+   A        L ++K +++ G+  D+ SY  LL A   +G    A+E +
Sbjct: 366 NIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAF 425

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            E++    K   + ++ +Y+ ++  +  A  ++ A+ +  +M   G+ P+ ++ S+L+ A
Sbjct: 426 KEMR----KNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTA 481

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           C     + +   + E     G + N  C N  + + +    + +A  L+
Sbjct: 482 CGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELY 530



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 34/214 (15%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++    T++  CG C    K   I E  +S+ + LNI  +NS +   +N  D    LE+
Sbjct: 470 PDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALEL 529

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTV---------------LAQEIYGEV------ 350
           Y  M    V  D  +YNIL+   C  G                  L +E+Y  +      
Sbjct: 530 YAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVK 589

Query: 351 --KHLEAKGVLK--------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             K  EA+             DV TY+ +++ + D   W+ A  + ++M    V P+ I 
Sbjct: 590 QGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAII 649

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            SSL+ A       E+ + L  E+++  C P +Q
Sbjct: 650 CSSLMEALNRGSQHERVLQLM-ELMKEKCIPLNQ 682



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/244 (19%), Positives = 109/244 (44%), Gaps = 8/244 (3%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           +P +   + N +   G   +   AL       ++   P++     ++        Y K+ 
Sbjct: 221 IPPSRTTYNNVINACGAAGNWKKALELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAI 280

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNM--QKLGVMADMASYNILLK 332
           A +E ++  N+  + +  N +++    D ++   +E+  +M  ++     D+ +Y  ++ 
Sbjct: 281 AYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMH 340

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           +  + G     + ++     + A+GV K ++ +Y+ ++  +A       AL + + +   
Sbjct: 341 SYYVCGKVEDCKAVF---DMMVAEGV-KPNIVSYNALLGAYASRGMHADALGIFKLLKQN 396

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G+ P+ +++++L+NA   +G  E+A   F+EM +  C PN    N L+ A   A  F  A
Sbjct: 397 GLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEA 456

Query: 453 FRLF 456
             L 
Sbjct: 457 ISLL 460


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 6/202 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++    ++ID  G      ++  +++++ S+ + L+   + +L+   +    +     
Sbjct: 326 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASS 385

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           VYK M   G + D+ + + ++     AG    A  I+   K +EA+G+   +V  YS ++
Sbjct: 386 VYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIF---KSMEARGLAPNEV-VYSALI 441

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A+    AL++   M  A  TP+TIT++ LI+    +G VE A   F+EML+AGC+
Sbjct: 442 HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCK 501

Query: 431 PNSQCCNILLQACVEACQFDRA 452
           P+    NIL+    +A   D A
Sbjct: 502 PDVYTYNILISGLCKAGNTDAA 523



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 131/306 (42%), Gaps = 28/306 (9%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL---GVMADMAS 326
           G  +++ ++ ++  +   T++I+ + +++N  A + K   E    M+K+   G    +A+
Sbjct: 238 GMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQ-EAVALMEKITANGCTPTIAT 296

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN LL   C  G     +E    ++ +   G    DV TY++++      K    A K+ 
Sbjct: 297 YNALLNGLCKMGRL---EEAIDLLRKIVDNGCTP-DVVTYTSLIDGLGKEKRSFEAYKLF 352

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           ++M S G+  +T+ +++LI      G + QA  +++ M   GC P+    + ++    +A
Sbjct: 353 KEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKA 412

Query: 447 CQFDRAFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503
            +   A R+F+S     L+  +V     Y      +      D                +
Sbjct: 413 GRIGAAVRIFKSMEARGLAPNEVV----YSALIHGLCKARKMD----------CALEMLA 458

Query: 504 SFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561
              K F   P T TYNIL+   C   D    +A  +EM   G  P+  ++ ILI     +
Sbjct: 459 QMKKAFC-TPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKA 517

Query: 562 GNVEGA 567
           GN + A
Sbjct: 518 GNTDAA 523



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 113/270 (41%), Gaps = 33/270 (12%)

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
           A+++IL+     AG  + A  +  E           +D+ TY+ IV   A  K  Q A+ 
Sbjct: 225 ATFSILINGLVKAGMMIQAHSLAQET----TTNGCTIDIHTYTAIVNWLAKNKKIQEAVA 280

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           + E + + G TP   T+++L+N     G +E+A+ L  +++  GC P+      L+    
Sbjct: 281 LMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLG 340

Query: 445 EACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           +  +   A++LF+          T+  T +  G    G   + S++ +K   S    P+ 
Sbjct: 341 KEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSV-YKTMTSHGCVPDV 399

Query: 497 VPNSH-----------------YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MN 537
           V  S                  + S + R    P    Y+ L+   C       AL  + 
Sbjct: 400 VTLSTMIDGLSKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLA 458

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           +M+    +P+ I++ ILID    SG+VE A
Sbjct: 459 QMKKAFCTPDTITYNILIDGLCKSGDVEAA 488



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 89/427 (20%), Positives = 172/427 (40%), Gaps = 65/427 (15%)

Query: 74  YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV 133
           Y  + + LAK+ +++E   ++E +  + G     A+  +L    +G+ K    GR++  +
Sbjct: 262 YTAIVNWLAKNKKIQEAVALMEKIT-ANGCTPTIATYNAL---LNGLCKM---GRLEEAI 314

Query: 134 GVLKKLNELGVAP-----LELFDGSG--------FKLLKNECQRLLDSGEVEMFVGLMEV 180
            +L+K+ + G  P       L DG G        +KL K    R L    V     +  +
Sbjct: 315 DLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGL 374

Query: 181 LEEFRLPVKELDEEFRIVQLCVNKPDV----------------NLAIR-YACIVPRA--- 220
           L+  ++P      +      CV  PDV                  A+R +  +  R    
Sbjct: 375 LQTGKIPQASSVYKTMTSHGCV--PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAP 432

Query: 221 -DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRA 277
            ++++   +    K R +  AL      KK   +P+      +ID  G+C  GD   +RA
Sbjct: 433 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILID--GLCKSGDVEAARA 490

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMAS----YNILLKA 333
            ++++       ++Y +N L++          +        GV+ DM+S    Y+ L+  
Sbjct: 491 FFDEMLEAGCKPDVYTYNILIS-------GLCKAGNTDAACGVLDDMSSSRFVYSSLVDG 543

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C +G       ++ E   +E  GV      T + ++     A     A+ +   +   G
Sbjct: 544 LCKSGKLEGGCMLFHE---MERSGVANSQ--TRTRLIFHLCKANRVDEAVSLFNAIRKEG 598

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           + P+   ++S+I+A   +G V +   +++EM +   +P+    N LL   + A + DRA 
Sbjct: 599 M-PHPYAYNSIISALIKSGKVNEGQAVYQEMTR-WWKPDRVTYNALLNGMIGANRMDRAH 656

Query: 454 RLFRSWT 460
             +   T
Sbjct: 657 YYYLEMT 663


>gi|255661158|gb|ACU25748.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 426

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  VT N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 275

Query: 455 LFR 457
           LF+
Sbjct: 276 LFQ 278



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGVTPNT ++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRA 273



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 106/231 (45%), Gaps = 6/231 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  FGK+    +AL      ++     ++ +   +I++     DY K+ +I+  L+
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
               T ++  +N+++NV   A   +    +   M+  GV  + ASY+ LL         +
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  ++ E++ ++      LD+ T + ++ V+      + A K+   M   G+ PN +++
Sbjct: 132 EALSVFAEMREIKC----LLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           ++L+    +A L  +A+HLF  M +   E N    N ++    +  + ++A
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  +  ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++   
Sbjct: 212 RKNIEQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKV 267

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S+GV  + + + ++I A   AGLV  A  L  E+ +    P++   
Sbjct: 268 GKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPR 323

Query: 437 NILLQACVEACQFDRAFRLFRS 458
           +I +     A + + A  +FR 
Sbjct: 324 DIAIHILAGAGRIEEATWVFRQ 345


>gi|255661162|gb|ACU25750.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 426

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  VT N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 275

Query: 455 LFR 457
           LF+
Sbjct: 276 LFQ 278



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGVTPNT ++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRA 273



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 106/231 (45%), Gaps = 6/231 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  FGK+    +AL      ++     ++ +   +I++     DY K+ +I+  L+
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
               T ++  +N+++NV   A   +    +   M+  GV  + ASY+ LL         +
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  ++ E++ ++      LD+ T + ++ V+      + A K+   M   G+ PN +++
Sbjct: 132 EALSVFAEMREIKC----LLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           ++L+    +A L  +A+HLF  M +   E N    N ++    +  + ++A
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 91/186 (48%), Gaps = 6/186 (3%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  +  ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++   
Sbjct: 212 RKNIEQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKV 267

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S+GV  + + + ++I A   AGLV  A  L  E+ +    P     
Sbjct: 268 GKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAI 327

Query: 437 NILLQA 442
           +IL  A
Sbjct: 328 HILAGA 333


>gi|356557985|ref|XP_003547290.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 692

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 105/217 (48%), Gaps = 30/217 (13%)

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           +K+ + K      V  Y+  +KV  +++ ++ A K+ ++ML  GV P+ IT+S+L+N  +
Sbjct: 143 LKYFQPKINPAKHVVLYNVTLKVLRESRDFEGAEKLFDEMLQRGVKPDNITFSTLVNCAS 202

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-----RSWTLSK- 463
            +GL  +A+ LFE+M   GCEP+   C+ ++ A       D+A  L+      +W+L   
Sbjct: 203 VSGLPNKAVELFEKMSGFGCEPDGITCSGMVYAYARTNNVDKAVNLYDRAKAENWSLDAV 262

Query: 464 TQVALGEDYD--GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
           T   L + Y   GN D+   +                   Y    K    KP   TYN L
Sbjct: 263 TFSTLIKMYSMAGNYDKCLEV-------------------YQEM-KVLGVKPNVATYNTL 302

Query: 522 MKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILID 556
           + A      + + KA+  EM++ G+SP+ I++  L++
Sbjct: 303 LGAMLRSKKHRQAKAIHKEMKSNGVSPDFITYASLLE 339



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 135/305 (44%), Gaps = 31/305 (10%)

Query: 179 EVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY--ACIVPRADILFCNF-VREFGKKR 235
           E+L   R  V E D  F I+   VN     LA++Y    I P   ++  N  ++   + R
Sbjct: 112 EILNVLRDNVSERDAVF-ILNTMVNPNTALLALKYFQPKINPAKHVVLYNVTLKVLRESR 170

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL-----RSQNVTLN 290
           D   A + +D   +    P+     T+++   + G   K+  ++E +         +T +
Sbjct: 171 DFEGAEKLFDEMLQRGVKPDNITFSTLVNCASVSGLPNKAVELFEKMSGFGCEPDGITCS 230

Query: 291 --IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
             +Y +    NV+       + +Y   +      D  +++ L+K   +AGN     E+Y 
Sbjct: 231 GMVYAYARTNNVDK-----AVNLYDRAKAENWSLDAVTFSTLIKMYSMAGNYDKCLEVYQ 285

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E+K L   GV K +V TY+T++     +K  + A  + ++M S GV+P+ IT++SL+   
Sbjct: 286 EMKVL---GV-KPNVATYNTLLGAMLRSKKHRQAKAIHKEMKSNGVSPDFITYASLLEVY 341

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-----------R 457
             A   E A+ +++EM   G +  +   N LL  C +    DRA  +F            
Sbjct: 342 TRAQCSEDALGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDRAVEIFYEMKSSGTCQPD 401

Query: 458 SWTLS 462
           SWT S
Sbjct: 402 SWTFS 406



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 9/230 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   ++ +    +    L  Y   K     PN+    T++        + +++AI+++
Sbjct: 262 VTFSTLIKMYSMAGNYDKCLEVYQEMKVLGVKPNVATYNTLLGAMLRSKKHRQAKAIHKE 321

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++S  V+ +   + SL+ V   A   +  L VYK M+  G+      YN LL  C   G 
Sbjct: 322 MKSNGVSPDFITYASLLEVYTRAQCSEDALGVYKEMKGNGMDMTADLYNKLLAMCADVGY 381

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A EI+ E+K   + G  + D +T+S+++ +++ +        +  +M+ +G  P   
Sbjct: 382 TDRAVEIFYEMK---SSGTCQPDSWTFSSLITIYSRSGKVSEVEGMLNEMIQSGFQPTIF 438

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-CC---NILLQACVE 445
             +SLI     A   +  + +F+++L  G  PN   CC   N+L Q   E
Sbjct: 439 VMTSLIRCYGKAKRTDDVVKIFKQLLDLGIVPNDHFCCCLLNVLTQTPKE 488



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 112/234 (47%), Gaps = 7/234 (2%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            V  + +  ++  A+  YD +K    S +     T+I +  + G+Y K   +Y++++   
Sbjct: 232 MVYAYARTNNVDKAVNLYDRAKAENWSLDAVTFSTLIKMYSMAGNYDKCLEVYQEMKVLG 291

Query: 287 VTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
           V  N+  +N+L+       K      ++K M+  GV  D  +Y  LL+    A  +  A 
Sbjct: 292 VKPNVATYNTLLGAMLRSKKHRQAKAIHKEMKSNGVSPDFITYASLLEVYTRAQCSEDAL 351

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TPNTITWSS 403
            +Y E+K     G + +    Y+ ++ + AD  +   A+++  +M S+G   P++ T+SS
Sbjct: 352 GVYKEMK---GNG-MDMTADLYNKLLAMCADVGYTDRAVEIFYEMKSSGTCQPDSWTFSS 407

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           LI   + +G V +   +  EM+Q+G +P       L++   +A + D   ++F+
Sbjct: 408 LITIYSRSGKVSEVEGMLNEMIQSGFQPTIFVMTSLIRCYGKAKRTDDVVKIFK 461


>gi|255661136|gb|ACU25737.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 426

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDIVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  VT N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWSKVGKLDRAAM 275

Query: 455 LFR 457
           LF+
Sbjct: 276 LFQ 278



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 93/208 (44%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGVTPNT ++S+L+          +A+ +F
Sbjct: 78  DIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I      G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWSKVGKLDRA 273



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 101/202 (50%), Gaps = 10/202 (4%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  +  ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ +++  
Sbjct: 212 RKNIEQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWSKV 267

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S+GV  + + + ++I A   AGLV  A  L  E+ +    P++   
Sbjct: 268 GKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYEKAGLVAHAKRLLHELKR----PDNIPR 323

Query: 437 NILLQACVEACQFDRAFRLFRS 458
           +I +   V A + + A  +FR 
Sbjct: 324 DIAIHILVGAGRIEEATWVFRQ 345


>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 108/235 (45%), Gaps = 7/235 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  +    K   L  A+  Y   ++   SP+ +    II+  G  G    +  ++ +
Sbjct: 430 VTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCE 489

Query: 282 LRSQNVTLNIYVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q  T N+  FN +  ++  A + +  L++Y++MQ  G   D  +Y+I+++   + G+
Sbjct: 490 MVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVME---VLGH 546

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
               +E  G    ++ K  +  D   Y  +V ++  A     A +  + ML AG+ PN  
Sbjct: 547 CGFLEEAEGVFAEMQRKNWVP-DEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVP 605

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-CQFDRAF 453
           T +SL++       + +A +L + ML  G  P+ Q   +LL  C +A   FD  F
Sbjct: 606 TCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDMGF 660



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 113/250 (45%), Gaps = 12/250 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  +G+   L  A+  ++  ++    P+     T+ID+    G    +  +Y+ 
Sbjct: 395 VTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQR 454

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++   ++ + + ++ ++N    A  L     ++  M   G   ++ ++NI++     A N
Sbjct: 455 MQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARN 514

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++Y ++++       + D  TYS +++V     + + A  V  +M      P+  
Sbjct: 515 YETALKLYRDMQN----AGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEP 570

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +  L++    AG V++A   ++ MLQAG  PN   CN LL        F R  R+  ++
Sbjct: 571 VYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLST------FLRVHRMSEAY 624

Query: 460 TLSKTQVALG 469
            L ++ +ALG
Sbjct: 625 NLLQSMLALG 634



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 112/237 (47%), Gaps = 6/237 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   V   G+ +      +  D   +    PN      +I   G      ++  ++  ++
Sbjct: 362 YTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQ 421

Query: 284 SQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
                 +   + +L++++A    L   +++Y+ MQ+ G+  D  +Y++++     AG+  
Sbjct: 422 EAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLP 481

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  ++ E   +  +G    ++ T++ ++ + A A+ ++ ALK+  DM +AG  P+ +T+
Sbjct: 482 AAHRLFCE---MVGQGCTP-NLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTY 537

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           S ++    + G +E+A  +F EM +    P+     +L+    +A   D+A++ +++
Sbjct: 538 SIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQA 594



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 38/287 (13%)

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQ-----EIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           K G  A+ A +N   +      N VL Q        G    L+ +   K D  TY+T+V 
Sbjct: 308 KWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVG 367

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               AK +    K+ ++M+  G  PNT+T++ LI++   A  +++AM++F +M +AGCEP
Sbjct: 368 NLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEP 427

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +      L+    +A   D A  +++       +  L  D    +  I+ +         
Sbjct: 428 DRVTYCTLIDIHAKAGFLDIAMDMYQ----RMQEAGLSPDTFTYSVIINCLGKAGHLPAA 483

Query: 492 N-----------TPNFV----------PNSHYSSFDKRF------SFKPTTTTYNILMK- 523
           +           TPN V             +Y +  K +       F+P   TY+I+M+ 
Sbjct: 484 HRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEV 543

Query: 524 -ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              C      + +  EM+     P+   + +L+D  G +GNV+ A Q
Sbjct: 544 LGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQ 590


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 105/269 (39%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     YK + + G  A +  +NIL+   C  G   +AQ ++  +     K  L+  V 
Sbjct: 117 FKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSI----TKWGLRPSVV 172

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +++T++  +          K+K  M ++GV P+  T+S LIN       + +A  LF EM
Sbjct: 173 SFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEM 232

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A   +                            
Sbjct: 233 LDKGLVPNGVTFTTLIDGHCKNGKVDSAMETY---------------------------- 264

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                   F P   TYN L+   C   D  + + L++EMR  
Sbjct: 265 --KQMLSQ-----------------CFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMK 305

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ I++T LID     G+++ A + R
Sbjct: 306 GLKPDKITYTTLIDGNCKEGDLDSAFELR 334



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 104/256 (40%), Gaps = 41/256 (16%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           C  P +   F   +  F K+ ++  A   +D+  K    P++    T+++     GD  +
Sbjct: 130 CGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQ 189

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNV--------NAHDL--------------KFT---- 308
              +   + +  V  ++Y ++ L+N          A+DL               FT    
Sbjct: 190 GFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLID 249

Query: 309 -----------LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                      +E YK M     + D+ +YN L+   C  G+   AQ++  E++    KG
Sbjct: 250 GHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMR---MKG 306

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            LK D  TY+T++           A +++E M+   +  + + +++LI+     G    A
Sbjct: 307 -LKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDA 365

Query: 418 MHLFEEMLQAGCEPNS 433
             +  EML  G +P++
Sbjct: 366 EKMLREMLSVGLKPDN 381



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 10/182 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +   Y+ + SQ    ++  +N+L+       DLK   
Sbjct: 239 PNGVTFTTLID--GHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   M+  G+  D  +Y  L+   C  G+   A E+    +    K  ++LD   Y+ +
Sbjct: 297 DLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFEL----RETMVKESIRLDDVAYTAL 352

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +MLS G+ P+  T++ +IN       V+ A  L +EM + G 
Sbjct: 353 ISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGH 412

Query: 430 EP 431
            P
Sbjct: 413 VP 414


>gi|218184371|gb|EEC66798.1| hypothetical protein OsI_33201 [Oryza sativa Indica Group]
          Length = 520

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 4/159 (2%)

Query: 292 YVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
           + + S++++   A  +   + +   M + GV  D A++  ++     AG+   A  ++ E
Sbjct: 102 FTYTSMLHLLGEAGRVPAMMRLLAEMLRAGVDPDAATFTTVMHWLAHAGDVDAAMRVWEE 161

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           ++    KG  +  + +Y+  VK+  DA     A +V ++M++ G+ P+  T++ LI   A
Sbjct: 162 MR--ARKGKCRPTLVSYTACVKILFDAGRPAEAREVFQEMVAEGLRPSCKTYTVLIEHLA 219

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           N G  E  M + ++M +AG EP+   CNIL+Q C  AC+
Sbjct: 220 NVGKFEATMEIMDKMQEAGVEPDKALCNILVQKCSRACE 258



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 6/94 (6%)

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
           A G  + D FTY++++ +  +A      +++  +ML AGV P+  T++++++  A+AG V
Sbjct: 93  AGGGFRHDRFTYTSMLHLLGEAGRVPAMMRLLAEMLRAGVDPDAATFTTVMHWLAHAGDV 152

Query: 415 EQAMHLFEEM--LQAGCEPN----SQCCNILLQA 442
           + AM ++EEM   +  C P     + C  IL  A
Sbjct: 153 DAAMRVWEEMRARKGKCRPTLVSYTACVKILFDA 186


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 107/244 (43%), Gaps = 56/244 (22%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           ++  G + D+ +YN+L+   C +G    A E+      LE   V   DV TY+TI++   
Sbjct: 167 LENSGAVPDVITYNVLIGGYCKSGEIDKALEV------LERMSVAP-DVVTYNTILRSLC 219

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           D+   + A++V +  L     P+ IT++ LI A  N   V QAM L +EM + GC+P+  
Sbjct: 220 DSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVV 279

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             N+L+    +  + D A +                                   + N P
Sbjct: 280 TYNVLINGICKEGRLDEAIKF----------------------------------LNNMP 305

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWT 552
           +             +  KP   T+NI++++ C+   +   + L+++M   G SP+ +++ 
Sbjct: 306 S-------------YGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFN 352

Query: 553 ILID 556
           ILI+
Sbjct: 353 ILIN 356



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 116/277 (41%), Gaps = 46/277 (16%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +++   M+K G   D+ +YN+L+   C  G      E    + ++ + G  K +V T++ 
Sbjct: 263 MKLLDEMRKKGCKPDVVTYNVLINGICKEGRL---DEAIKFLNNMPSYGC-KPNVITHNI 318

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I++       W  A ++  DML  G +P+ +T++ LIN      L+ +A+ + E+M + G
Sbjct: 319 ILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG 378

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSW----------TLSKTQVALGED--YDGNT 476
           C PNS   N LL    +  + DRA                 T +    AL +D   D   
Sbjct: 379 CVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAV 438

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI----LMKACCTDYYRV 532
           + ++ +  K                           P   TYN     L K   T+Y   
Sbjct: 439 EILNQLSSK------------------------GCSPVLITYNTVIDGLTKVGKTEY--A 472

Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             L+ EMR  GL P+ I+++ L+   G  G V+ A++
Sbjct: 473 VELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIK 509



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 120/275 (43%), Gaps = 31/275 (11%)

Query: 204 KPDV---NLAIRYACIVPRAD--ILFCNFVREFGKK----------RDLVSALRAYDASK 248
           KPDV   N+ I   C   R D  I F N +  +G K          R + S  R  DA +
Sbjct: 275 KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAER 334

Query: 249 ------KHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNV 300
                 +   SP++     +I+   +C   +  RAI   E +       N   +N L++ 
Sbjct: 335 LLSDMLRKGCSPSVVTFNILINF--LCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHG 392

Query: 301 NAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358
              + K    +E  + M   G   D+ +YN LL A C  G    A EI   +  L +KG 
Sbjct: 393 FCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEI---LNQLSSKGC 449

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
             + + TY+T++         + A+++ E+M   G+ P+ IT+S+L+      G V++A+
Sbjct: 450 SPV-LITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAI 508

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
            +F +M     +P++   N ++    +A Q  RA 
Sbjct: 509 KIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAI 543



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 10/214 (4%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLN 290
           +KR L  A+   +   KH   PN      ++   G C +    RAI   E + S+    +
Sbjct: 360 RKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLH--GFCQEKKMDRAIEYLEIMVSRGCYPD 417

Query: 291 IYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           I  +N+L+     D K    +E+   +   G    + +YN ++      G T  A E+  
Sbjct: 418 IVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLE 477

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E++    KG LK D+ TYST+++          A+K+  DM    + P+ +T+++++   
Sbjct: 478 EMRR---KG-LKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGL 533

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
             A    +A+     M++ GC+P      IL++ 
Sbjct: 534 CKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEG 567


>gi|255661170|gb|ACU25754.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 426

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  VT N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 275

Query: 455 LFR 457
           LF+
Sbjct: 276 LFQ 278



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGVTPNT ++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRA 273



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 106/231 (45%), Gaps = 6/231 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  FGK+    +AL      ++     ++ +   +I++     DY K+ +I+  L+
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
               T ++  +N+++NV   A   +    +   M+  GV  + ASY+ LL         +
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  ++ E++ ++      LD+ T + ++ V+      + A K+   M   G+ PN +++
Sbjct: 132 EALSVFAEMREIKC----LLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           ++L+    +A L  +A+HLF  M +   E N    N ++    +  + ++A
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 91/186 (48%), Gaps = 6/186 (3%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  +  ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++   
Sbjct: 212 RKNIEQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKV 267

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S+GV  + + + ++I A   AGLV  A  L  E+ +    P     
Sbjct: 268 GKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAI 327

Query: 437 NILLQA 442
           +IL  A
Sbjct: 328 HILAGA 333


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 153/393 (38%), Gaps = 62/393 (15%)

Query: 219 RADILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG------- 270
           + D++ C   ++ F   R++  A R     +KH   P+++    +I   G C        
Sbjct: 7   QPDVILCTKLIKGFFNSRNIDKATRVMGILEKH-GKPDVFAYNAVIS--GFCKANRIESA 63

Query: 271 ----DYMKSRAIYEDLRSQNVTLNIY-----------VFNSLMNVN-------------- 301
               D MK +    D+ + N+ +  +           VF  L+  N              
Sbjct: 64  KTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIE 123

Query: 302 ----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                  +   L++   M   G+  D  +YN++ +  C  G    A E    V+ L ++G
Sbjct: 124 AYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEF---VRTLNSRG 180

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
             K DV TY+ +++   +   W    K   ++ S G  PN +T+S LI++    G +E++
Sbjct: 181 C-KPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEES 239

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
           ++L + M + G  P++ C + L+ A     + D A                    DG   
Sbjct: 240 VNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMIC-----------DGFLP 288

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKAL 535
            I N          N         +   D+     P  ++YN ++ A  +  D YR   +
Sbjct: 289 DIVNYNTIMAALCKNGNGDHAVEIFGKLDE-VGCPPNVSSYNTMLSALWSSGDRYRALGM 347

Query: 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           +++M + G+ P+ I++  LI      G V+ A+
Sbjct: 348 ISQMLSKGIDPDVITYNSLISCLCRDGMVDEAI 380



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 101/426 (23%), Positives = 179/426 (42%), Gaps = 53/426 (12%)

Query: 72  DYYAD--MASKLAK---DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIRE 126
           DY  D  + +KL K   + R  + A  V  ++   G    FA       V SG  K+   
Sbjct: 5   DYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHGKPDVFA----YNAVISGFCKA--- 57

Query: 127 GRIDCVVGVLKKLNELGVAP--------LELFDGSG-FKLLKNECQRLLDSGEVEMFVGL 177
            RI+    VL ++   G +P        +  F G G   L     + LL     +  +  
Sbjct: 58  NRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLIT 117

Query: 178 MEVLEEFRLPVKELDEEFRIVQLCVNK---PDV---NLAIRYACIVPRADILFCNFVREF 231
             +L E  +    +DE  +++   +++   PD    N+  R  C   + D  F  FVR  
Sbjct: 118 YTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAF-EFVRTL 176

Query: 232 ---GKKRDLVS---ALRA------YDASKKHLSS-------PNMYICRTIIDVCGICGDY 272
              G K D+++    LRA      +D  +K +S        PN+     +I      G  
Sbjct: 177 NSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKI 236

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNIL 330
            +S  + + ++ + +T + Y ++ L+     +  L   +E    M   G + D+ +YN +
Sbjct: 237 EESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTI 296

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           + A C  GN   A EI+G++  +        +V +Y+T++     +     AL +   ML
Sbjct: 297 MAALCKNGNGDHAVEIFGKLDEVGCPP----NVSSYNTMLSALWSSGDRYRALGMISQML 352

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
           S G+ P+ IT++SLI+     G+V++A+ L  +ML    +PN      +L    +A + D
Sbjct: 353 SKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRID 412

Query: 451 RAFRLF 456
            A  + 
Sbjct: 413 DAIEVL 418



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 6/145 (4%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           I+  L       N+  +N++++   ++ D    L +   M   G+  D+ +YN L+   C
Sbjct: 312 IFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLC 371

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G   +  E  G +  +   G  + ++ +Y T++     A     A++V   M+  G  
Sbjct: 372 RDG---MVDEAIGLLADM-LSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQ 427

Query: 396 PNTITWSSLINACANAGLVEQAMHL 420
           PN  T++ LI     +G   QAM L
Sbjct: 428 PNETTYTLLIEGIGFSGSRTQAMEL 452


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 139/356 (39%), Gaps = 36/356 (10%)

Query: 229 REFGKKRDLVSALRAYDASKKHL----SSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLR 283
           R    + DL   +R Y  +        S P  + + R ++   G  G   ++  +  ++R
Sbjct: 79  RRLASRPDLRRLMRLYVTAATAFVARGSLPMAHEVMRGMVAAFGEAGRLPEAADMVLEMR 138

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           S  + L +   N ++ V      F    +V+  M + GV  D  S+  L+  CC  G   
Sbjct: 139 SHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGKV- 197

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
             +E+   +  +   G   LD  T + +V+   +   ++   +    ML  G  PN + +
Sbjct: 198 --EEVDALLAAMWRYG-FSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNY 254

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           ++ I+       V+QA H+ EEM+  G +PN      L+    +    +RAFRLF     
Sbjct: 255 TAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIK 314

Query: 462 SKTQVALGEDYDGNTDRISNM------EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           S +       Y  N    + M      E K  ++       V              KP T
Sbjct: 315 SSS-------YKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQ----------GLKPNT 357

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            TY  L+   C    + R   LMN+M+  G  PN  ++  +ID     G ++ A +
Sbjct: 358 NTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYK 413



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 94/444 (21%), Positives = 174/444 (39%), Gaps = 38/444 (8%)

Query: 40  LASSSSLSSIPTVHSSQTALLSTVR-RDLSSRNDY------YADMASKLAKDGRLEEFAM 92
           LA   +++S+PTV  S  +  +    R L+SR D       Y   A+     G L     
Sbjct: 53  LAPDDAIASLPTVADSAGSAAALALFRRLASRPDLRRLMRLYVTAATAFVARGSLPMAHE 112

Query: 93  IVESVVVSEGNVSKF--ASMLSLEMVASGIVKSIREGRIDCVVG-----------VLKKL 139
           ++  +V + G   +   A+ + LEM + G+   +        VG           V   +
Sbjct: 113 VMRGMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGM 172

Query: 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199
              GV P    D   F+ L   C R    G+VE    L+  +  +   +        +  
Sbjct: 173 TRAGVCP----DERSFRALVVVCCR---EGKVEEVDALLAAMWRYGFSLDNATCTVVVRS 225

Query: 200 LCVNK--PDVNLAIR--YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN 255
           LC      DV+   R       P   + +  ++    K+R +  A    +        PN
Sbjct: 226 LCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPN 285

Query: 256 MYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE--VY 312
           +Y   T+ID +C I       R   + ++S +   N++ +  ++     + K      + 
Sbjct: 286 VYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLL 345

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M + G+  +  +Y  L+   C  G+   A E+  ++K    +G L  +++TY+ ++  
Sbjct: 346 VRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQ---EGFLP-NIYTYNAVIDG 401

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           F      Q A KV     S G+  + IT++ LI      G +  A+ LF+ M++ GC P+
Sbjct: 402 FCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPD 461

Query: 433 SQCCNILLQACVEACQFDRAFRLF 456
            +    L+    +  Q + + + F
Sbjct: 462 IEAYTSLISTYCQQRQMEESQKFF 485



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 111/258 (43%), Gaps = 21/258 (8%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311
           PN     T+I   G C  G + ++  +   ++ +    NIY +N++++      K   E 
Sbjct: 355 PNTNTYTTLIG--GHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQ-EA 411

Query: 312 YKNMQ---KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           YK ++     G+  D  +Y IL+   C  G+   A +++     +   G    D+  Y++
Sbjct: 412 YKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLF---DRMVENGCCP-DIEAYTS 467

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  +   +  + + K  +  L  G+ P   T++S+I      G    A+ +FE M+Q G
Sbjct: 468 LISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNG 527

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK------TQVALGEDY---DGNTDRI 479
           C  +S     L+    +  + + A  L+      +      T+V L  +Y   +  +  +
Sbjct: 528 CFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAV 587

Query: 480 SNMEHKDKQSITNTPNFV 497
           S ++  DK+   +T + V
Sbjct: 588 SVLDRLDKRQQVHTVDVV 605


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 112/238 (47%), Gaps = 29/238 (12%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           K D  TY+ ++     A  W+ A+ + +DML A + P+  T+++LINAC ++G  ++A++
Sbjct: 194 KPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALN 253

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ-------------V 466
           + ++M + G  P+    NI+L A     Q+ +    F     +  +             V
Sbjct: 254 VCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLV 313

Query: 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH-YS----------SFDKRFS--FKP 513
            LG++     D  ++M+ K  +   +   F    H YS          +F+   +   KP
Sbjct: 314 KLGQNGKA-IDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKP 372

Query: 514 TTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              +YN L+ A  +     +A  + NE++  G  P+ +S+T L++A G SG  E A++
Sbjct: 373 NIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMK 430



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/313 (19%), Positives = 130/313 (41%), Gaps = 53/313 (16%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           P+      +I+ CG  G++ ++  + + +    V  ++   N +++      +++  L  
Sbjct: 230 PSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSY 289

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ M+   +  D  + NI++      G    A +I+  +K  E +     DV T++TI+ 
Sbjct: 290 FELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMK--EKRSECYPDVVTFTTIIH 347

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +++     +        ML+ G+ PN +++++LI A A+ G+ ++A  +F E+ + G  P
Sbjct: 348 LYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHP 407

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +      LL A  ++ + ++A ++F                                   
Sbjct: 408 DVVSYTSLLNAYGKSGKPEKAMKVFE---------------------------------- 433

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHI 549
                          +R   KP   +YN L+ A  +     +A  +++EM   G+ PN +
Sbjct: 434 -------------LMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIV 480

Query: 550 SWTILIDACGGSG 562
           S   L+ ACG  G
Sbjct: 481 SICTLLAACGRCG 493



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/340 (19%), Positives = 132/340 (38%), Gaps = 59/340 (17%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           GK  D+ ++++     K+    P++    TII +  +CG     +  +  + ++ +  NI
Sbjct: 319 GKAIDIFNSMK----EKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNI 374

Query: 292 YVFNSLMNVNA-HDL-KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             +N+L+   A H + K    V+  ++K G   D+ SY  LL A   +G    A +++  
Sbjct: 375 VSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVF-- 432

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
              L  +   K ++ +Y+ ++  +        A+++  +M   GV PN ++  +L+ AC 
Sbjct: 433 --ELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACG 490

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
             G   +   +       G + N+   N  + + +   ++D+A  L+R+    K      
Sbjct: 491 RCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKV----- 545

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--T 527
                                                     KP   TYN+L+  CC  +
Sbjct: 546 ------------------------------------------KPDPVTYNVLISGCCKMS 563

Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            Y      ++EM  + +  +   ++ +I A    G V  A
Sbjct: 564 KYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEA 603



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 41/263 (15%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  +G K  L  A+      +++   PN+    T++  CG CG  +K +++      + 
Sbjct: 450 LIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRG 509

Query: 287 VTLNIYVFNS----LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC------- 335
           + LN   +NS     ++V  +D   +L  Y+ M+   V  D  +YN+L+  CC       
Sbjct: 510 IKLNTTAYNSAIGSYLSVGEYDKALSL--YRAMRTKKVKPDPVTYNVLISGCCKMSKYGE 567

Query: 336 --------LAGNTVLAQEIYGEV--------KHLEAKGVL--------KLDVFTYSTIVK 371
                   +     L++E+Y  V        +  EA+ +         + DV TY+ ++ 
Sbjct: 568 ALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIH 627

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +  A+ W+ A  +  +M +  V P++I  SSL+ A    G   + + L E M +     
Sbjct: 628 AYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPF 687

Query: 432 NSQCCNILLQACVEACQFDRAFR 454
           N    N      V AC   R +R
Sbjct: 688 N----NSSFFEMVSACSLLREWR 706



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 107/266 (40%), Gaps = 45/266 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID----------------- 264
           + + + +  +GK      A++ ++  +++   PN+     +ID                 
Sbjct: 410 VSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHE 469

Query: 265 ------------------VCGICGDYMKSRAIYEDLRSQNVTLNIYVFN----SLMNVNA 302
                              CG CG  +K +++      + + LN   +N    S ++V  
Sbjct: 470 MERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGE 529

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
           +D   +L  Y+ M+   V  D  +YN+L+  CC       A     E+  L+    + L 
Sbjct: 530 YDKALSL--YRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLK----IPLS 583

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
              YS+++  ++       A  +   M   G  P+ IT++++I+A   A   E+A  LF 
Sbjct: 584 KEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFL 643

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQ 448
           EM     +P+S  C+ L++A  +  Q
Sbjct: 644 EMETDDVQPDSIACSSLMRAFNKGGQ 669


>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g32630-like [Glycine max]
          Length = 619

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 132/307 (42%), Gaps = 55/307 (17%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLG 319
           ++DV    G+  +++ +  ++ ++ V   ++ +N+L+N  V   D +   E+   M++ G
Sbjct: 188 VVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLLNACVVRKDREGVDEILGLMEREG 247

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           V+A + +Y IL++    +     A+++Y E+     +  +++DV+ Y++++     A   
Sbjct: 248 VVASLVTYTILIEWYASSERIGEAEKVYEEM----CERNVEMDVYVYTSMISWNCRAGNV 303

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           + A  + ++M+  G+ PNT T+ +LI+    AG +E A  L EEM   G + N    N +
Sbjct: 304 RRASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTM 363

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
           +    +    D AFRL                                Q I         
Sbjct: 364 MDGYCKRGMMDEAFRL--------------------------------QDIM-------- 383

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
                  +R  F+    TYNIL    C    Y   K ++N M   G++PN ++    I+ 
Sbjct: 384 -------ERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEI 436

Query: 558 CGGSGNV 564
               GN+
Sbjct: 437 YCQEGNL 443



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 113/245 (46%), Gaps = 49/245 (20%)

Query: 258 ICRTIID--------VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAH 303
           ICR I+         + G+C  G    +  + E+++ + V LN+ +FN++M+        
Sbjct: 314 ICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGMM 373

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACC-------------------LAGNTVLAQ 344
           D  F L+    M++ G  AD+ +YNIL    C                   +A N V   
Sbjct: 374 DEAFRLQ--DIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCA 431

Query: 345 ---EIYGE----------VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              EIY +          ++++E +GV+  ++ TY+T++  ++  +  + A  +K +M+ 
Sbjct: 432 TFIEIYCQEGNLAEPERFLRNIEKRGVVP-NIVTYNTLIDAYSKNEKVKQAHXLKAEMVE 490

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+ P+  T++SLI+       V++A+ LF EML  G   N +    ++    +  + D 
Sbjct: 491 KGLLPDVFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADE 550

Query: 452 AFRLF 456
           A +L+
Sbjct: 551 ALKLY 555



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 4/122 (3%)

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           +N++K GV+ ++ +YN L+ A         A  +  E+     KG+L  DVFTY++++  
Sbjct: 451 RNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVE---KGLLP-DVFTYTSLIHG 506

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                    ALK+  +ML  G+  N  T++++I+  +  G  ++A+ L++EM++ G  P+
Sbjct: 507 ECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEALKLYDEMMRMGLIPD 566

Query: 433 SQ 434
            +
Sbjct: 567 DR 568



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 25/182 (13%)

Query: 241 LRAYDASKKHLS-------SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
           L  Y+ +K+ L+       +PN+  C T I++    G+  +      ++  + V  NI  
Sbjct: 405 LHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIVT 464

Query: 294 FNSLMNV--------NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
           +N+L++          AH LK        M + G++ D+ +Y  L+   C+      A +
Sbjct: 465 YNTLIDAYSKNEKVKQAHXLK------AEMVEKGLLPDVFTYTSLIHGECIVDKVDEALK 518

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           ++ E   +  KG+ + +V TY+ I+   +       ALK+ ++M+  G+ P+   + +L+
Sbjct: 519 LFNE---MLVKGI-RGNVKTYTAIISGLSKEGRADEALKLYDEMMRMGLIPDDRVFEALV 574

Query: 406 NA 407
            +
Sbjct: 575 GS 576


>gi|255661134|gb|ACU25736.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
 gi|255661138|gb|ACU25738.1| pentatricopeptide repeat-containing protein [Verbena halei]
 gi|255661140|gb|ACU25739.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 426

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  VT N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 275

Query: 455 LFR 457
           LF+
Sbjct: 276 LFQ 278



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGVTPNT ++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRA 273



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 106/231 (45%), Gaps = 6/231 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  FGK+    +AL      ++     ++ +   +I++     DY K+ +I+  L+
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
               T ++  +N+++NV   A   +    +   M+  GV  + ASY+ LL         +
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  ++ E++ ++      LD+ T + ++ V+      + A K+   M   G+ PN +++
Sbjct: 132 EALSVFAEMREIKC----LLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           ++L+    +A L  +A+HLF  M +   E N    N ++    +  + ++A
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  +  ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++   
Sbjct: 212 RKNIEQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKV 267

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S+GV  + + + ++I A   AGLV  A  L  E+ +    P++   
Sbjct: 268 GKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPR 323

Query: 437 NILLQACVEACQFDRAFRLFRS 458
           +I +     A + + A  +FR 
Sbjct: 324 DIAIHILAGAGRIEEATWVFRQ 345


>gi|384247843|gb|EIE21328.1| TPR-like protein, partial [Coccomyxa subellipsoidea C-169]
          Length = 309

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 133/325 (40%), Gaps = 77/325 (23%)

Query: 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGV 320
           I +CG       +  +  ++R++ +  N + +++LMNV     +L+  L+V+  +Q  G+
Sbjct: 1   ISLCGHRQALRHALGLVGEMRTRGIACNTHTYSALMNVAIKCGELELALDVFHQLQVDGL 60

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV---------LKLDVFTYSTIVK 371
            A++ +YN L+             +IYG++   +   V         L+ +  T++TI+ 
Sbjct: 61  RANVVTYNTLI-------------DIYGKLGRWQDAIVADITLMWQGLEPEARTFNTIII 107

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                   Q AL+V + M + G TP   T+++LI+A A A  ++ A+  F+ M + GCE 
Sbjct: 108 ACNMCGQPQEALRVFDIMTARGFTPTATTYTALISAHAKADRLDHALATFQRMAEEGCER 167

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    + L+  C +A ++  A  LF           +G D                    
Sbjct: 168 SVITYSALIGTCEKAGRWRLALDLF---------AQMGRD-------------------- 198

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC----CTDYYRVKALMNEMRTVGLSPN 547
                                P T  YN  M AC    C +  R  A+   M+     P+
Sbjct: 199 ------------------GIAPNTAIYNAAMSACAQGACAEEAR--AIFTAMKRSTCRPD 238

Query: 548 HISWTILIDACGGSGNVEGALQCRF 572
            ++ T L  AC   G+  GAL+ R 
Sbjct: 239 ALTHTALATACQRCGDWAGALKVRL 263



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/248 (19%), Positives = 101/248 (40%), Gaps = 39/248 (15%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           G ++ L  AL      +    + N +    +++V   CG+   +  ++  L+   +  N+
Sbjct: 5   GHRQALRHALGLVGEMRTRGIACNTHTYSALMNVAIKCGELELALDVFHQLQVDGLRANV 64

Query: 292 YVFNSLMNVNAHDLKFTLEVYKNMQKL--GVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             +N+L+++     ++   +  ++  +  G+  +  ++N ++ AC + G     QE    
Sbjct: 65  VTYNTLIDIYGKLGRWQDAIVADITLMWQGLEPEARTFNTIIIACNMCGQP---QEALRV 121

Query: 350 VKHLEAKGVL-----------------KLD-----------------VFTYSTIVKVFAD 375
              + A+G                   +LD                 V TYS ++     
Sbjct: 122 FDIMTARGFTPTATTYTALISAHAKADRLDHALATFQRMAEEGCERSVITYSALIGTCEK 181

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
           A  W++AL +   M   G+ PNT  +++ ++ACA     E+A  +F  M ++ C P++  
Sbjct: 182 AGRWRLALDLFAQMGRDGIAPNTAIYNAAMSACAQGACAEEARAIFTAMKRSTCRPDALT 241

Query: 436 CNILLQAC 443
              L  AC
Sbjct: 242 HTALATAC 249


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 27/326 (8%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNVNAHDL 305
           KK    PN+Y   ++I      G  +   AI  +  +    V  N   +N+LMNV   ++
Sbjct: 360 KKKGCKPNVYTYTSLIS-----GQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENM 414

Query: 306 KF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           +    L V+  M K G + + +SYN L++  C  G+T  A  +   +     KG     +
Sbjct: 415 EIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNM----LKGRPTPTL 470

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY+ I+K + D+    +A++V E M + G  P+  +++ LI+       +E A  +F E
Sbjct: 471 VTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNE 530

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M+  G  PN      L+    +  + D A R+      S  +         N    + + 
Sbjct: 531 MMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCR--------PNVQTYNVLI 582

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRT 541
           H     +T   NF                P   TY+ ++   C +     AL   N+M  
Sbjct: 583 H----GLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVK 638

Query: 542 VGLSPNHISWTILIDACGGSGNVEGA 567
            G  PN  +++ LI A G  G VE A
Sbjct: 639 HGCLPNLHTYSSLIQALGQEGRVEEA 664



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 141/324 (43%), Gaps = 45/324 (13%)

Query: 279 YEDLRSQ-NVTLNIYVFNSLMNVNAHDLKFT---LEVYKNMQKLGVMADMASYNILLKAC 334
           Y D+ SQ    + ++ + +L+ +  + L  T   ++ Y  + + G+  ++  YN ++ A 
Sbjct: 180 YLDMFSQRGPKMGLFTYTTLL-IQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINAL 238

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C  GN   A+ I  +V     K  +K D FTY++++  +   +    A ++   M   G 
Sbjct: 239 CKDGNVRDAESIINKV----FKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGC 294

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PN  T+S+LIN   N+G V +A+    EM + G  P        + A  +  + + A++
Sbjct: 295 EPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWK 354

Query: 455 LF--------RSWTLSKTQVALGEDYDGNTDRISNME----HKDKQS--ITNTPNF---- 496
           +F        +    + T +  G+       R+S M     H+  +   + NT  +    
Sbjct: 355 IFIDMKKKGCKPNVYTYTSLISGQ-------RVSRMAIGLFHRMSRDGVVPNTVTYNALM 407

Query: 497 ---VPNSHYSSFDKRFSFK------PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLS 545
              + N    S    F+        P T++YN L++  CT  D  +  +++  M     +
Sbjct: 408 NVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPT 467

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
           P  +++ I+I     SG+ + A++
Sbjct: 468 PTLVTYNIIIKGYCDSGDTDVAIR 491



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 7/199 (3%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
            ++ ++  + +  N   + +L++    D K      + + M++ G   ++ +YN+L+   
Sbjct: 526 GMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGL 585

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
               N   A+E+   +  LE K  +  DV TYST++    +     +AL++   M+  G 
Sbjct: 586 TKQNNFSGAEELCKVM--LEEK--ISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGC 641

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PN  T+SSLI A    G VE+A  +F E+ + G  P+      +++ CV + + DRAF 
Sbjct: 642 LPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFD 701

Query: 455 LFRSWTLSKTQVALGEDYD 473
                  +  Q  L + YD
Sbjct: 702 FLGEMINAGCQPTL-QTYD 719



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 89/183 (48%), Gaps = 10/183 (5%)

Query: 265 VCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV 320
           + G C D     A  + E ++      N+  +N L++     ++     E+ K M +  +
Sbjct: 547 ISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKI 606

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGE-VKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
             D+ +Y+ ++   C  G   LA E++ + VKH    G L  ++ TYS++++        
Sbjct: 607 SPDVVTYSTVINGLCNNGAIPLALEMFNKMVKH----GCLP-NLHTYSSLIQALGQEGRV 661

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           + A ++  ++   G+ P+ +T+  +I  C  +G V++A     EM+ AGC+P  Q  ++L
Sbjct: 662 EEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVL 721

Query: 440 LQA 442
           ++ 
Sbjct: 722 IKG 724



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 81/432 (18%), Positives = 164/432 (37%), Gaps = 79/432 (18%)

Query: 178 MEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADIL-FCNFVREFG 232
           M +LE    P         +++ C NK ++  A+ Y  +     P+  +  +   + +  
Sbjct: 145 MRLLESRDRPAAVGRARIHMIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLN 204

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           K     + +  Y    +    PN+ I  ++I+     G+   + +I   +    +  + +
Sbjct: 205 KLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTF 264

Query: 293 VFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
            + S++       DL    E++  M + G   + A+Y+ L+   C +G    A +   E+
Sbjct: 265 TYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEM 324

Query: 351 -KH-------------------------------LEAKGVLKLDVFTYSTIVKVFADAKW 378
            +H                               ++ KG  K +V+TY++++   +  + 
Sbjct: 325 TRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGC-KPNVYTYTSLI---SGQRV 380

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            +MA+ +   M   GV PNT+T+++L+N       ++ A+ +F  M + GC PN+   N 
Sbjct: 381 SRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNE 440

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           L++                  T+  T+ A+          ++NM          T N + 
Sbjct: 441 LIRGYC---------------TIGDTEKAMS--------MLTNMLKGRPTPTLVTYNIII 477

Query: 499 NSHYSSFDKRFSFK-----------PTTTTYNILMKACC--TDYYRVKALMNEMRTVGLS 545
             +  S D   + +           P   +Y  L+   C  +       + NEM   GL 
Sbjct: 478 KGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLC 537

Query: 546 PNHISWTILIDA 557
           PN +++T LI  
Sbjct: 538 PNEVTYTALISG 549



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 136/350 (38%), Gaps = 27/350 (7%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
           + + +  + + RDL SA   ++   +    PN     T+I+  G+C  G   ++     +
Sbjct: 266 YTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLIN--GLCNSGRVNEALDFISE 323

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    V   ++ F + +    +   ++   +++ +M+K G   ++ +Y  L+     +G 
Sbjct: 324 MTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLI-----SGQ 378

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            V    I G    +   GV+  +  TY+ ++ V  +      AL V   M   G  PNT 
Sbjct: 379 RVSRMAI-GLFHRMSRDGVVP-NTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTS 436

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           +++ LI      G  E+AM +   ML+    P     NI+++   ++   D A R+    
Sbjct: 437 SYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELM 496

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
             +  Q     D    T+ IS      K  +        +  ++    R    P   TY 
Sbjct: 497 KANGCQ----PDEWSYTELISGFCKISKMELA-------SGMFNEMMDR-GLCPNEVTYT 544

Query: 520 ILMKACCTDYYR--VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            L+   C D        ++  M+  G  PN  ++ +LI       N  GA
Sbjct: 545 ALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGA 594



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 85/192 (44%), Gaps = 6/192 (3%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           ++ +   +  + K   L  A R  +  K+    PN+     +I       ++  +  + +
Sbjct: 540 EVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 599

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +  + ++ ++  +++++N   N   +   LE++  M K G + ++ +Y+ L++A    G
Sbjct: 600 VMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEG 659

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A+E++ E+K    K  L  D  TY  +++V   +     A     +M++AG  P  
Sbjct: 660 RVEEAEEMFSELK----KQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTL 715

Query: 399 ITWSSLINACAN 410
            T+  LI    N
Sbjct: 716 QTYDVLIKGLQN 727


>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 831

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 102/200 (51%), Gaps = 11/200 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN+  C TI++  G C  G   ++   +  ++   V  N++VFNSL+   +N +D+    
Sbjct: 529 PNVRTCGTIVN--GYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVG 586

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           EV   M++ GV  D+ +++ L+ A    G+    +EIY ++     +G +  D+  +S +
Sbjct: 587 EVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDM----LEGGIDPDIHAFSIL 642

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-G 428
            K +A A   + A ++   M   GV PN + ++ +I+   +AG +++AM ++ +M  + G
Sbjct: 643 AKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYNKMRGSVG 702

Query: 429 CEPNSQCCNILLQACVEACQ 448
             PN      L+    EA Q
Sbjct: 703 LSPNLTTYETLIWGFGEAKQ 722



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 17/168 (10%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           K  + TY+T+V      K +   L +   +   G+ P+TI ++++INA + +G ++QAM 
Sbjct: 351 KPSIITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASSESGNLDQAMK 410

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           +FE+M ++GC+P +   N L++   +  + + + RL         ++ L ++     DR 
Sbjct: 411 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL--------EMMLRDEMLQPNDRT 462

Query: 480 SNMEHK---DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
            N+  +   +++ I    N V         + F  KP   T+N L +A
Sbjct: 463 CNILVQAWCNQRKIEEAWNIVYKM------QSFGVKPDAVTFNTLARA 504



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 142/355 (40%), Gaps = 36/355 (10%)

Query: 219 RAD-ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R D ILF   +    +  +L  A++ ++  K+    P      T+I   G  G   +S  
Sbjct: 386 RPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSR 445

Query: 278 IYED-LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           + E  LR + +  N    N L+    N   ++    +   MQ  GV  D  ++N L +A 
Sbjct: 446 LLEMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAY 505

Query: 335 CLAGNTVLAQE-IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
              G+T  A++ I   + H +    +K +V T  TIV  + +    + AL+    M   G
Sbjct: 506 SRIGSTCTAEDMIIPRMLHNK----VKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELG 561

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           V PN   ++SLI    N   ++    + + M + G +P+    + L+ A        R  
Sbjct: 562 VHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCE 621

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRI------SNMEHKDKQSITNTPNFVPNSHYSSFDK 507
            ++R        +  G D D +   I         E +  + I N              +
Sbjct: 622 EIYRD------MLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM------------R 663

Query: 508 RFSFKPTTTTYNILMKACCTDYYRVKALM--NEMR-TVGLSPNHISWTILIDACG 559
           +F  +P    Y  ++   C+     KA+   N+MR +VGLSPN  ++  LI   G
Sbjct: 664 KFGVRPNVVIYTQIISGWCSAGEMKKAMQVYNKMRGSVGLSPNLTTYETLIWGFG 718



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 72/360 (20%), Positives = 144/360 (40%), Gaps = 34/360 (9%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I +   V    +++   S L      +K+   P+  +   II+     G+  ++  I+E 
Sbjct: 355 ITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASSESGNLDQAMKIFEK 414

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM-----ASYNILLKACCL 336
           ++          FN+L  +  +     LE    + ++ +  +M      + NIL++A C 
Sbjct: 415 MKESGCKPTASTFNTL--IKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWC- 471

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM-----LS 391
             N    +E +  V  +++ GV K D  T++T+ + ++       +    EDM     L 
Sbjct: 472 --NQRKIEEAWNIVYKMQSFGV-KPDAVTFNTLARAYSRIG----STCTAEDMIIPRMLH 524

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
             V PN  T  +++N     G +E+A+  F  M + G  PN    N L++  +     D 
Sbjct: 525 NKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDG 584

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
              +          V L E++    D ++     +  S           +    +     
Sbjct: 585 VGEV----------VDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEG--GI 632

Query: 512 KPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            P    ++IL K  A   +  + + ++N+MR  G+ PN + +T +I     +G ++ A+Q
Sbjct: 633 DPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQ 692



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 38/193 (19%), Positives = 83/193 (43%), Gaps = 5/193 (2%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +F + ++ F    D+       D  ++    P++    T+++     GD  +   IY D+
Sbjct: 568 VFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDM 627

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
               +  +I+ F+ L      A + +   ++   M+K GV  ++  Y  ++   C AG  
Sbjct: 628 LEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEM 687

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A ++Y +++       L  ++ TY T++  F +AK    A ++ ++M    V P   T
Sbjct: 688 KKAMQVYNKMRGSVG---LSPNLTTYETLIWGFGEAKQPWKAEELLKEMEEKNVVPTRKT 744

Query: 401 WSSLINACANAGL 413
              + +   + G+
Sbjct: 745 MQLIADGWKSIGV 757


>gi|326495542|dbj|BAJ85867.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 706

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 106/221 (47%), Gaps = 2/221 (0%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F    + FG+  D       +   ++  + PN+++   +++  G  G    +R ++E+
Sbjct: 283 VAFAVLAKMFGEAGDYDGIQFVFKEMREVGTKPNIFVYNALLEALGKTGKPGLARNLFEE 342

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + ++ V  N     ++  +   A   +  L+++  M++  + AD    N LL  C   G 
Sbjct: 343 MTAEGVEPNARTLTAVAKIYGRARWGRDALQLWDQMREKKIPADSILCNTLLSMCADVGL 402

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A++++ E+K  +   V + D ++Y+ ++ ++   K    AL++  +ML +G+  N +
Sbjct: 403 VAEAEQLFEEMKDPDLTDVPQPDKWSYTAMINIYGSIKDADRALQLFVEMLQSGIEANIM 462

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           +++ +I     A  +  A+ + E  L+ G +P+ + C  LL
Sbjct: 463 SYTIVIQCLGKANRIRDAVEMLEAGLERGLKPDDRLCGCLL 503



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 43/170 (25%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+K M+++G   ++  YN LL+A    G   LA+ ++ E   + A+GV + +  T + + 
Sbjct: 304 VFKEMREVGTKPNIFVYNALLEALGKTGKPGLARNLFEE---MTAEGV-EPNARTLTAVA 359

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM------ 424
           K++  A+W + AL++ + M    +  ++I  ++L++ CA+ GLV +A  LFEEM      
Sbjct: 360 KIYGRARWGRDALQLWDQMREKKIPADSILCNTLLSMCADVGLVAEAEQLFEEMKDPDLT 419

Query: 425 ---------------------------------LQAGCEPNSQCCNILLQ 441
                                            LQ+G E N     I++Q
Sbjct: 420 DVPQPDKWSYTAMINIYGSIKDADRALQLFVEMLQSGIEANIMSYTIVIQ 469



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 124/314 (39%), Gaps = 51/314 (16%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQN--VTLNIYVFNSLMNVNAHDLKFTLEV---YKNM 315
           T+I     C  + K+   +E + S    V  +   ++++++V A  L+   EV   +   
Sbjct: 215 TLITAARRCRQFAKAVEWFERMYSPGSAVLPDEVTYSAVLDVYAQ-LRMKEEVLALFDRA 273

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           +  G   D  ++ +L K    AG+    Q ++ E++ +  K     ++F Y+ +++    
Sbjct: 274 RGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGTKP----NIFVYNALLEALGK 329

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
                +A  + E+M + GV PN  T +++      A     A+ L+++M +     +S  
Sbjct: 330 TGKPGLARNLFEEMTAEGVEPNARTLTAVAKIYGRARWGRDALQLWDQMREKKIPADSIL 389

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
           CN LL  C +      A +LF             +D D     ++++   DK S T   N
Sbjct: 390 CNTLLSMCADVGLVAEAEQLFEEM----------KDPD-----LTDVPQPDKWSYTAMIN 434

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
                 Y S                       D  R   L  EM   G+  N +S+TI+I
Sbjct: 435 I-----YGSI---------------------KDADRALQLFVEMLQSGIEANIMSYTIVI 468

Query: 556 DACGGSGNVEGALQ 569
              G +  +  A++
Sbjct: 469 QCLGKANRIRDAVE 482



 Score = 42.0 bits (97), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
           +M   GV  D  +Y+ L+ A         A E + E  +     VL  D  TYS ++ V+
Sbjct: 200 DMVDSGVPLDNITYSTLITAARRCRQFAKAVEWF-ERMYSPGSAVLP-DEVTYSAVLDVY 257

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           A  +  +  L + +    +G  P+ + ++ L      AG  +    +F+EM + G +PN 
Sbjct: 258 AQLRMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGTKPNI 317

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWT 460
              N LL+A  +  +   A  LF   T
Sbjct: 318 FVYNALLEALGKTGKPGLARNLFEEMT 344



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 38/79 (48%)

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           ++ L A     +D   ++  +K    A+ W  A ++  DM+ +GV  + IT+S+LI A  
Sbjct: 162 LRGLPADAGFAVDTILFNVALKSLRAARRWDEAERLALDMVDSGVPLDNITYSTLITAAR 221

Query: 410 NAGLVEQAMHLFEEMLQAG 428
                 +A+  FE M   G
Sbjct: 222 RCRQFAKAVEWFERMYSPG 240


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 129/306 (42%), Gaps = 67/306 (21%)

Query: 273  MKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
            +++  + +   S  V+L    +N+L+   V+ + +     ++  M++LG   D  +YN++
Sbjct: 758  LEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLI 817

Query: 331  LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
            L A    G ++  +++    K +  KG     V TY+TI+     +K    A+ +   ++
Sbjct: 818  LDA---MGKSMRIEDMLKVQKEMHCKGYESTYV-TYNTIISGLVKSKMLYEAMDLYYKLM 873

Query: 391  SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
            S G +P   T+  L++     G +E A  LF+EML  GC+PN    NILL          
Sbjct: 874  SEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLN--------- 924

Query: 451  RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
              +RL                  GNT+++  +            N V             
Sbjct: 925  -GYRL-----------------AGNTEKVCELFQ----------NMVDQ----------G 946

Query: 511  FKPTTTTYNILMKACCT--------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
              P   +Y +L+ A CT         Y+R      ++  +GL P+ I++ +LI   G SG
Sbjct: 947  INPDIKSYTVLIGALCTAGRLNDSLSYFR------QLTELGLEPDLITYNLLIHGLGRSG 1000

Query: 563  NVEGAL 568
             +E A+
Sbjct: 1001 RLEEAV 1006



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/351 (19%), Positives = 146/351 (41%), Gaps = 55/351 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   + + G   D  S +  ++A K    + N+     ++D     G   ++  +++ 
Sbjct: 322 VTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQ 381

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++ + +    Y +NSL++  + A  L   LE++ +M   G   +  +Y + +     +G 
Sbjct: 382 MKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGE 441

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           ++ A + Y   + +++KG++  DV   + ++   A +    MA +V  ++ S GV P+ I
Sbjct: 442 SLKAIKRY---ELMKSKGIVP-DVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNI 497

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++ +I  C+ A   ++AM +F EM++  C P+    N L+    +A + + A+++F   
Sbjct: 498 TYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHEL 557

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                                                          K  +  PT  TYN
Sbjct: 558 -----------------------------------------------KEMNLDPTDCTYN 570

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            L+     +     V  L+ EM +    PN I++  ++D    +G V  AL
Sbjct: 571 TLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYAL 621



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 109/240 (45%), Gaps = 6/240 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           + + +  F K   L  AL  ++    H  +PN Y     I+  G  G+ +K+   YE ++
Sbjct: 394 YNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMK 453

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           S+ +  ++   N+++   A   +  +   V+  ++ +GV  D  +Y +++K C  A N  
Sbjct: 454 SKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNAD 513

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A +++ E+  +E + V   DV   ++++     A     A K+  ++    + P   T+
Sbjct: 514 EAMKVFSEM--IETRCVP--DVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTY 569

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           ++L+      G V++ MHL EEM      PN    N +L    +  + + A  +  + T+
Sbjct: 570 NTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTM 629



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 17/179 (9%)

Query: 275  SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            +RAIY      N+ LN Y         A + +   E+++NM   G+  D+ SY +L+ A 
Sbjct: 915  NRAIY------NILLNGYRL-------AGNTEKVCELFQNMVDQGINPDIKSYTVLIGAL 961

Query: 335  CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
            C AG    +   + ++  L     L+ D+ TY+ ++     +   + A+ +  DM  +G+
Sbjct: 962  CTAGRLNDSLSYFRQLTELG----LEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGI 1017

Query: 395  TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             PN  T++SLI      G   +A  ++EE+L+ G +PN    N L+     +   D AF
Sbjct: 1018 APNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAF 1076



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 90/182 (49%), Gaps = 6/182 (3%)

Query: 254  PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
            PN  I   +++   + G+  K   +++++  Q +  +I  +  L+     A  L  +L  
Sbjct: 914  PNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSY 973

Query: 312  YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            ++ + +LG+  D+ +YN+L+     +G    A  ++ +   +E  G+   +++TY++++ 
Sbjct: 974  FRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFND---MEKSGIAP-NLYTYNSLIL 1029

Query: 372  VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                      A K+ E++L  G  PN  T+++LI   + +G  + A   + +M+  GC P
Sbjct: 1030 YLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPP 1089

Query: 432  NS 433
            NS
Sbjct: 1090 NS 1091



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/379 (20%), Positives = 143/379 (37%), Gaps = 94/379 (24%)

Query: 225 CNFV----REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           CN++    R  G+ RD+    + +D  ++ +   N+    TI    G+ G    +     
Sbjct: 115 CNYMLELMRAHGRVRDMA---QVFDLMQRQIVKANVGTFLTIFRSLGMEGGLRSAPVALP 171

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            ++   + LN Y +N L+   V +   +  +EVYK M   G++  + +Y++L+ A     
Sbjct: 172 MMKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLA----- 226

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
                   +G           K DV    T+V        W +      +M   GV PN 
Sbjct: 227 --------FG-----------KRDV---ETVV--------WLL-----REMEDHGVKPNV 251

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            +++  I     AG  E+A  + ++M   GC+P+     +L+Q   +A +   A  +F  
Sbjct: 252 YSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVF-- 309

Query: 459 WTLSKTQVALGEDYDGNTDRISNM-------EHKDKQSITNTPNFVPNSHYSS------- 504
           W +  +        D   DR++ +       ++ D +S+    N +    Y+        
Sbjct: 310 WKMKAS--------DQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTA 361

Query: 505 -----------------FD--KRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVG 543
                            FD  K+   +P   +YN L+              L N M   G
Sbjct: 362 VVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHG 421

Query: 544 LSPNHISWTILIDACGGSG 562
            +PN  ++ + I+  G SG
Sbjct: 422 PTPNGYTYVLFINYYGKSG 440



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 117/291 (40%), Gaps = 54/291 (18%)

Query: 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL----LKACCLAGNTVLAQEIY 347
           +V N LMN   H LK      + + + G  AD +S++ L    LK   +  +   A+ I 
Sbjct: 680 FVKNGLMNEALHTLK------EYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENI- 732

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
                  A   + LD F  S +++    +K    A ++ +   S GV+  T ++++LI  
Sbjct: 733 -------ALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICG 785

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
             +  L++ A  LF EM + GC+P+    N++L A  ++ + +   ++ +          
Sbjct: 786 LVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKE--------- 836

Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS------HYSSFDKRF-----SFKPTTT 516
                         M  K  +S   T N + +        Y + D  +      F PT  
Sbjct: 837 --------------MHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPC 882

Query: 517 TYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           TY  L+     D      + L +EM   G  PN   + IL++    +GN E
Sbjct: 883 TYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTE 933



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/237 (17%), Positives = 97/237 (40%), Gaps = 12/237 (5%)

Query: 223  LFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTIIDVCGICGDYMKSRAIYED 281
            L C  V E     +L+       +  K L   P+ +    I+D  G          + ++
Sbjct: 782  LICGLVDE-----NLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKE 836

Query: 282  LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
            +  +        +N++++  V +  L   +++Y  +   G      +Y  LL      G 
Sbjct: 837  MHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGK 896

Query: 340  TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
               A++++ E+     K     +   Y+ ++  +  A   +   ++ ++M+  G+ P+  
Sbjct: 897  IEDAEDLFDEMLDYGCKP----NRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIK 952

Query: 400  TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            +++ LI A   AG +  ++  F ++ + G EP+    N+L+     + + + A  LF
Sbjct: 953  SYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLF 1009



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 62/329 (18%), Positives = 142/329 (43%), Gaps = 34/329 (10%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           P++    ++ID     G   ++  I+ +L+  N+      +N+L+     +  +K  + +
Sbjct: 529 PDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHL 588

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M       ++ +YN +L   C  G    A    G + ++  KG +  D+ +Y+T + 
Sbjct: 589 LEEMNSNSYPPNLITYNTVLDCLCKNGEVNYA---LGMLYNMTMKGCMP-DLSSYNTALH 644

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE-MLQAGCE 430
                     A ++   M    + P+  T  +++ +    GL+ +A+H  +E +LQ G +
Sbjct: 645 GLVKEDRLTEAFRIFCQMKKV-LAPDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSK 703

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM-EH--KDK 487
            +    + L++  ++    +++     +  LS+    L +D+      +S +  H  K K
Sbjct: 704 ADRSSFHSLMEGILKRAGMEKSIEFAENIALSRI---LLDDF-----FLSPLIRHLCKSK 755

Query: 488 QSITNTPNFVPNSHYSSFDKRF---SFKPTTTTYNILMKACCTDYY--RVKALMNEMRTV 542
           +++         +H     K+F        T +YN L+     +      + L +EM+ +
Sbjct: 756 KAL--------EAH--ELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRL 805

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           G  P+  ++ +++DA G S  +E  L+ +
Sbjct: 806 GCDPDEFTYNLILDAMGKSMRIEDMLKVQ 834


>gi|156083863|ref|XP_001609415.1| pentatricopeptide repeat domain containing protein [Babesia bovis
           T2Bo]
 gi|154796666|gb|EDO05847.1| pentatricopeptide repeat domain containing protein [Babesia bovis]
          Length = 1067

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 53/259 (20%)

Query: 310 EVYKNM-QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           E++K M    G   +  +Y I+L A     N    +E    ++ ++ KG +K +   Y+T
Sbjct: 717 EIWKEMANSQGNEPNEVTYGIMLDAYV---NNNRMEEAMDLLQEMKQKGNVKPNTIMYTT 773

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++K F   +  Q A+ + + M+S GV  NT+T++S+I+ACA  G ++ A  L EEM+   
Sbjct: 774 LIKGFGQNRQLQRAMSIYDMMVSEGVMRNTVTYNSIIDACARVGDMKAAAALLEEMMMNQ 833

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            EP+    + +++     C  D++F+L                       +S M  +   
Sbjct: 834 VEPDLITFSTIIKGYCVQCNMDQSFQL-----------------------LSIMYER--- 867

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSP 546
                                  KP    YN L++ C      +  + L  +MR  G++P
Sbjct: 868 ---------------------GIKPDGILYNSLLEGCVKSGRLWLCEKLWEQMRIHGIAP 906

Query: 547 NHISWTILIDACGGSGNVE 565
           ++ + TILI   G SG ++
Sbjct: 907 SNFTLTILIKMYGRSGQLD 925



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 7/239 (2%)

Query: 222  ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
            I++   ++ FG+ R L  A+  YD         N     +IID C   GD   + A+ E+
Sbjct: 769  IMYTTLIKGFGQNRQLQRAMSIYDMMVSEGVMRNTVTYNSIIDACARVGDMKAAAALLEE 828

Query: 282  LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
            +    V  ++  F++++       ++  + ++   M + G+  D   YN LL+ C  +G 
Sbjct: 829  MMMNQVEPDLITFSTIIKGYCVQCNMDQSFQLLSIMYERGIKPDGILYNSLLEGCVKSGR 888

Query: 340  TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNT 398
              L ++++   + +   G+   + FT + ++K++  +        + E + +  G T N 
Sbjct: 889  LWLCEKLW---EQMRIHGIAPSN-FTLTILIKMYGRSGQLDKVFDLVERLPAEYGFTINA 944

Query: 399  ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
              ++ L++AC   G    A+ ++  +     +P+++    LLQ       F  A  L R
Sbjct: 945  HVYTCLMSACITNGRYNTALDIYRCVKDGSVKPDAKTYETLLQGVTRGNLFAEAVDLLR 1003



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 43/241 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN----------VTLNIYVFNSLM----- 298
           P +  C  II   G CG   + + I++++ +            + L+ YV N+ M     
Sbjct: 694 PQLQTCGVIIKSLGCCGRIAECKEIWKEMANSQGNEPNEVTYGIMLDAYVNNNRMEEAMD 753

Query: 299 ---------NVNAHDLKFT---------------LEVYKNMQKLGVMADMASYNILLKAC 334
                    NV  + + +T               + +Y  M   GVM +  +YN ++ AC
Sbjct: 754 LLQEMKQKGNVKPNTIMYTTLIKGFGQNRQLQRAMSIYDMMVSEGVMRNTVTYNSIIDAC 813

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G+   A  +  E+   +    ++ D+ T+STI+K +        + ++   M   G+
Sbjct: 814 ARVGDMKAAAALLEEMMMNQ----VEPDLITFSTIIKGYCVQCNMDQSFQLLSIMYERGI 869

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+ I ++SL+  C  +G +     L+E+M   G  P++    IL++    + Q D+ F 
Sbjct: 870 KPDGILYNSLLEGCVKSGRLWLCEKLWEQMRIHGIAPSNFTLTILIKMYGRSGQLDKVFD 929

Query: 455 L 455
           L
Sbjct: 930 L 930


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 112/253 (44%), Gaps = 15/253 (5%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           YK M +  +  D+  Y I+++ C  AG     ++    +  ++ KG +  D F Y+T++K
Sbjct: 335 YKTMLERNISPDVVLYTIMIRGCAEAGRI---EDALSFLDVMKKKGFVP-DTFCYNTVLK 390

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           V  D    + A  ++ +ML   +  ++ T + +I      GLV++AM +F+EM + GC+P
Sbjct: 391 VLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDP 450

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKT-----QVALGEDYDGNTDRISNMEHKD 486
                N L+       + + A  LF    +        ++ LG +   +++ +  + H  
Sbjct: 451 TVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDM 510

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGL 544
            QS      +      S  D      P   TYN L+   C       A  L  E++  G+
Sbjct: 511 CQSGQVLKAY--KLLRSIIDS--GVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGI 566

Query: 545 SPNHISWTILIDA 557
           SP+ I++  LID 
Sbjct: 567 SPDEITYGTLIDG 579



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 89/182 (48%), Gaps = 6/182 (3%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           A+   LRS+   L+ +  + L+ +++H  +   +   + +  G+ A  +++  L+ A   
Sbjct: 92  ALSPRLRSR--PLHAHAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALVAAHSS 149

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           AG    A + +  +   +++       F Y+TI+K   D+    +AL +   M++AG  P
Sbjct: 150 AGRHADAVQAFSRMDEFQSRPT----AFVYNTILKALVDSGVILLALALYNRMVAAGCAP 205

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N  T++ L++     G+   A+ +F+EML  G  PN +   +LL +   A + D A +L 
Sbjct: 206 NRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLL 265

Query: 457 RS 458
            S
Sbjct: 266 GS 267



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 98/208 (47%), Gaps = 12/208 (5%)

Query: 253 SPNMYICRTIID-VC--GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKF 307
           +PN      ++D +C  G+ GD +K   +++++  + +  N+ ++  L++   NA  +  
Sbjct: 204 APNRATYNVLMDGLCKQGMAGDALK---MFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDE 260

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            +++  +M+  G + D  +YN  L   C  G      E +  +  L+  G   L +  YS
Sbjct: 261 AVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRV---NEAFQRLVMLQDGG-FALGLKGYS 316

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            ++     A+ +       + ML   ++P+ + ++ +I  CA AG +E A+   + M + 
Sbjct: 317 CLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKK 376

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRL 455
           G  P++ C N +L+   +    +RA  L
Sbjct: 377 GFVPDTFCYNTVLKVLCDHGDLERAHTL 404



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 22/249 (8%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN +LKA   +G  +LA  +Y     + A G    +  TY+ ++           ALK+ 
Sbjct: 175 YNTILKALVDSGVILLALALY---NRMVAAGCAP-NRATYNVLMDGLCKQGMAGDALKMF 230

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           ++ML  G+ PN   ++ L+++  NAG +++A+ L   M   GC P+    N  L    + 
Sbjct: 231 DEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKV 290

Query: 447 CQFDRAFRLFRSWTLSKTQVALG-EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
            + + AF+  R   L     ALG + Y    D +      D+             +Y + 
Sbjct: 291 GRVNEAFQ--RLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGF----------GYYKTM 338

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSG 562
            +R +  P    Y I+++  C +  R++   + ++ M+  G  P+   +  ++      G
Sbjct: 339 LER-NISPDVVLYTIMIRG-CAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHG 396

Query: 563 NVEGALQCR 571
           ++E A   R
Sbjct: 397 DLERAHTLR 405



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 25/231 (10%)

Query: 234 KRDLVS-ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           KR LV  A++ +D   +H   P +     +ID     G Y + R   E+ R         
Sbjct: 429 KRGLVDEAMQIFDEMGEHGCDPTVMTYNALID-----GFYREGR--LEEAR--------M 473

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           +F+ +   N   L   L +  N  +     D  S   L+   C +G  + A   Y  ++ 
Sbjct: 474 LFHKMEMGNNPSLFLRLTLGANQVR-----DSESLRKLVHDMCQSGQVLKA---YKLLRS 525

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +   GV+  DV TY+T++     A+    A+++ +++   G++P+ IT+ +LI+    A 
Sbjct: 526 IIDSGVVP-DVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAH 584

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
               AM LF+ +LQ+G  P+    N ++++     +  +A  L+  +   K
Sbjct: 585 RENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKK 635


>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 855

 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 122/268 (45%), Gaps = 31/268 (11%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN++++       T  A+ ++ E++    K   K D  TY+ ++     A  W+ A+ + 
Sbjct: 153 YNMMIRLHARHNRTDQARGLFFEMQ----KCRCKPDAETYNALINAHGRAGQWRWAMNIM 208

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           +DML A + P+  T+++LINAC ++G  ++A+++ ++M   G  P+    NI+L A    
Sbjct: 209 DDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSG 268

Query: 447 CQFDRA---FRLFRSWTLSKTQVALG---------EDYDGNTDRISNMEHKDKQSITNTP 494
            Q+ +A   F L +   +                 + YD   D  ++M+ K  +   +  
Sbjct: 269 TQYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVV 328

Query: 495 NFVPNSH-YS----------SFDKRFS--FKPTTTTYNILMKACCTDYYRVKAL--MNEM 539
            F    H YS          +F+   +   KP   +YN L+ A        +AL   NE+
Sbjct: 329 TFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEI 388

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G  P+ +S+T L++A G S   + A
Sbjct: 389 KQNGFRPDVVSYTSLLNAYGRSRKPQKA 416



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 105/233 (45%), Gaps = 13/233 (5%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           G   D +  LR  +  K H   PN+    T++  CG CG  +K   +      + + LN 
Sbjct: 446 GLLEDAIEILREMEQDKIH---PNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNT 502

Query: 292 YVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             +NS +   +N  +    +++Y +M+K  + +D  +Y +L+  CC       A     E
Sbjct: 503 VAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEE 562

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED----MLSAGVTPNTITWSSLI 405
           + HL+    L +    YS+I+  ++        +   E     M S G +P+ +T+++++
Sbjct: 563 MMHLK----LPMSKEVYSSIICAYSKQASALGQIIEAESTFNLMKSLGCSPDVVTYTAML 618

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           +A   A   E+   LFEEM +   + ++  C  L++A  +  Q  R   L +S
Sbjct: 619 DAYNAAEKWEKLYALFEEMEENDVKLDTIACAALMRAFNKGGQPGRVLSLAQS 671



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 116/268 (43%), Gaps = 33/268 (12%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  ++ SYN LL A    G    A +++ E+K    +   + DV +Y++++  +  ++ 
Sbjct: 357 GLKPNIVSYNALLGAYAARGMENEALQVFNEIK----QNGFRPDVVSYTSLLNAYGRSRK 412

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            Q A ++ + +    + PN +++++LI+A  + GL+E A+ +  EM Q    PN      
Sbjct: 413 PQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICT 472

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQV-------ALGE-----DYDGNTDRISNMEHK- 485
           LL AC    Q  +   +  +  +   ++       A+G      +YD   D  ++M  K 
Sbjct: 473 LLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKK 532

Query: 486 -DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA------CCTDYYRVKAL--- 535
               S+T T         S F +  SF        + M         C    +  AL   
Sbjct: 533 IKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASALGQI 592

Query: 536 ------MNEMRTVGLSPNHISWTILIDA 557
                  N M+++G SP+ +++T ++DA
Sbjct: 593 IEAESTFNLMKSLGCSPDVVTYTAMLDA 620



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/313 (18%), Positives = 125/313 (39%), Gaps = 53/313 (16%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           P+      +I+ CG  G++ ++  + + +    V  ++   N ++       +++  L  
Sbjct: 218 PSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKALSY 277

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           ++ ++   +  D  ++NI++           A +I+  +K  E K     DV T+++++ 
Sbjct: 278 FELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMK--EKKSECHPDVVTFTSMIH 335

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           +++     +        ML+ G+ PN +++++L+ A A  G+  +A+ +F E+ Q G  P
Sbjct: 336 LYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRP 395

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +      LL A   + +  +A  +F+                                  
Sbjct: 396 DVVSYTSLLNAYGRSRKPQKAREIFK---------------------------------- 421

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHI 549
                          KR + KP   +YN L+ A  ++     A  ++ EM    + PN +
Sbjct: 422 -------------MIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVV 468

Query: 550 SWTILIDACGGSG 562
           S   L+ ACG  G
Sbjct: 469 SICTLLAACGRCG 481



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/189 (20%), Positives = 91/189 (48%), Gaps = 6/189 (3%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           AL+ ++  K++   P++    ++++  G      K+R I++ ++  N+  NI  +N+L++
Sbjct: 381 ALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALID 440

Query: 300 VNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
               +  L+  +E+ + M++  +  ++ S   LL AC   G  V    +       E +G
Sbjct: 441 AYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAA---EMRG 497

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
           + KL+   Y++ +  + +   +  A+ +   M    +  +++T++ LI+ C       +A
Sbjct: 498 I-KLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEA 556

Query: 418 MHLFEEMLQ 426
           +   EEM+ 
Sbjct: 557 LSFMEEMMH 565


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 138/331 (41%), Gaps = 72/331 (21%)

Query: 254 PNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--------VNAH 303
           P   I  T+I+  G C   D   + +I+E ++S+++  +   +N+L+N          A 
Sbjct: 368 PTTAIYNTLIN--GYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAE 425

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           DL         M+K GV   + ++N L+ A   AG     ++ +  +  ++ KG+ K +V
Sbjct: 426 DLVM------EMEKSGVDPSVETFNTLIDAYGRAGQL---EKCFTVLSDMQDKGI-KSNV 475

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            ++ ++VK F        A+ + +DM+   V PN   ++S+I+A   +G  EQA  L E+
Sbjct: 476 ISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEK 535

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M  +G   +    N+LL+   +  Q D A  L                       I N+ 
Sbjct: 536 MKSSGVSASIFTYNLLLKGLCKNSQIDEAEEL-----------------------IYNLT 572

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRT 541
           ++                          +P   +YN ++ ACC   D  R   L+ EM  
Sbjct: 573 NQ------------------------GLRPDVVSYNTIISACCNKGDTDRALELLQEMHK 608

Query: 542 VGLSPNHISWTILIDACGGSGNVEGALQCRF 572
             + P   ++  L+ A G +G V   ++C +
Sbjct: 609 YDIRPTLRTYHPLLSALGSAGRVHD-MECLY 638



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 6/169 (3%)

Query: 293 VFNSLMNVNAH-DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +  SL++V  H D++    +   +   G   D  ++N  ++AC  AG+  L + +    +
Sbjct: 129 LLESLLSVGRHADVRAAFGL---LVAAGARPDTFAWNKAVQACVAAGD--LDEALAMLRR 183

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
              ++G    D F+Y+ ++     +     ALKV ++M+  GV PN IT++++I+     
Sbjct: 184 MGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKG 243

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           G +E    L ++MLQ G +PN    N+LL     A + D    L    T
Sbjct: 244 GDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMT 292



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 111/249 (44%), Gaps = 11/249 (4%)

Query: 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
           +  +VP   I +   +  + + RDL  A   ++  K     P+      +I+  G+C   
Sbjct: 363 HTGLVPTTAI-YNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALIN--GLCKME 419

Query: 273 MKSRA--IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN 328
           M + A  +  ++    V  ++  FN+L++    A  L+    V  +MQ  G+ +++ S+ 
Sbjct: 420 MITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFG 479

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            ++KA C  G    A  I  ++ H   K V+  +   Y++I+  + ++   + A  + E 
Sbjct: 480 SVVKAFCKNGKIPEAVAILDDMIH---KDVVP-NAQVYNSIIDAYIESGGTEQAFLLVEK 535

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M S+GV+ +  T++ L+        +++A  L   +   G  P+    N ++ AC     
Sbjct: 536 MKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGD 595

Query: 449 FDRAFRLFR 457
            DRA  L +
Sbjct: 596 TDRALELLQ 604



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 86/166 (51%), Gaps = 6/166 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   ++ AI +D+  ++V  N  V+NS+++  + +   +    + + M+  GV A + +Y
Sbjct: 489 GKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTY 548

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N+LLK  C       A+E+   + +L  +G L+ DV +Y+TI+    +      AL++ +
Sbjct: 549 NLLLKGLCKNSQIDEAEEL---IYNLTNQG-LRPDVVSYNTIISACCNKGDTDRALELLQ 604

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           +M    + P   T+  L++A  +AG V     L++ M+    EP+S
Sbjct: 605 EMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSS 650



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/400 (20%), Positives = 150/400 (37%), Gaps = 69/400 (17%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           GK  D   AL+ +D       +PN     T+ID     GD      + + +       N+
Sbjct: 209 GKGSD---ALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNV 265

Query: 292 YVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             +N L++    A  +  T  +   M    ++ D  +Y+IL       G++     ++GE
Sbjct: 266 VTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGE 325

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
                 KGV+ +  +T S ++           A +V E ++  G+ P T  +++LIN   
Sbjct: 326 SLK---KGVI-IGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYC 381

Query: 410 NAGLVEQAMHLFE-----------------------------------EMLQAGCEPNSQ 434
               ++ A  +FE                                   EM ++G +P+ +
Sbjct: 382 QVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVE 441

Query: 435 CCNILLQACVEACQFDRAFRLF--------RSWTLSKTQVALGEDYDGNTDR----ISNM 482
             N L+ A   A Q ++ F +         +S  +S   V      +G        + +M
Sbjct: 442 TFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDM 501

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSF-----------KPTTTTYNILMKACCTDYY- 530
            HKD        N + +++  S     +F             +  TYN+L+K  C +   
Sbjct: 502 IHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQI 561

Query: 531 -RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              + L+  +   GL P+ +S+  +I AC   G+ + AL+
Sbjct: 562 DEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALE 601



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 138/341 (40%), Gaps = 33/341 (9%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++  C  +++     G +   RA +  L +     + + +N  +   V A DL   L +
Sbjct: 121 PSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAM 180

Query: 312 YKNMQKL--GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            + M +       D  SYN+++     +G    A +++ E   +  +GV   +  TY+T+
Sbjct: 181 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDE---MVDRGVAP-NQITYNTM 236

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         +   ++++ ML  G  PN +T++ L++    AG +++   L +EM     
Sbjct: 237 IDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSM 296

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF----------RSWTLSKTQVALGEDYD-GNTDR 478
            P+    +IL               LF           ++T S     L +D      ++
Sbjct: 297 LPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQ 356

Query: 479 ISNM-EHKDKQSITNTPNFVPNSH---------YSSFDKRFS--FKPTTTTYNILMKACC 526
           +  M  H      T   N + N +         +S F++  S   +P   TYN L+   C
Sbjct: 357 VLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLC 416

Query: 527 TDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
                 +A  L+ EM   G+ P+  ++  LIDA G +G +E
Sbjct: 417 KMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLE 457


>gi|145517919|ref|XP_001444837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412270|emb|CAK77440.1| unnamed protein product [Paramecium tetraurelia]
          Length = 981

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 134/324 (41%), Gaps = 53/324 (16%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF----NSLMNVNAHDLKFT 308
            P +    T+ID         K+   +E+L+      + + +    N L N +  DLK  
Sbjct: 318 QPTIVTINTMIDQYFKNNQREKAWKTFENLKLTQTKPDNFTYTTLINGLKNSDNMDLKLA 377

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
             +++  ++     D   YN LL AC  AG+     ++  E+K  +    ++LD  TY+T
Sbjct: 378 FSLFEEYKQYN-QPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQT---IQLDEITYNT 433

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML-QA 427
           ++K     K    AL + E+M   G+ PN I+++SL+++C     +  A   FEEM  Q 
Sbjct: 434 LIKGCGRKKRLNDALNLFEEMKLIGIKPNRISFNSLLDSCVKCNKMNIAWRYFEEMRKQY 493

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
           G  P++   +IL+   ++    +R   L R+ TL +     G+                 
Sbjct: 494 GIFPDNFTYSILVNG-IKTNHSNRD-ELLRAITLLEQIQETGQ----------------- 534

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLS 545
                                  FKP    YN L+ AC    +  +   L  EM+   + 
Sbjct: 535 -----------------------FKPDEILYNSLIDACVKFNEIQKGMELFREMKNKQIE 571

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
           P+ +++ ILI A G   ++ GA +
Sbjct: 572 PSSVTYGILIKAYGKQNDLNGAFK 595



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 112/239 (46%), Gaps = 12/239 (5%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR-SQNVTLNIYVF 294
           DL  A   ++  K++ + P+  I   ++D C   GD  +   +  +++ SQ + L+   +
Sbjct: 373 DLKLAFSLFEEYKQY-NQPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQTIQLDEITY 431

Query: 295 NSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           N+L+        L   L +++ M+ +G+  +  S+N LL +C       +A   + E++ 
Sbjct: 432 NTLIKGCGRKKRLNDALNLFEEMKLIGIKPNRISFNSLLDSCVKCNKMNIAWRYFEEMR- 490

Query: 353 LEAKGVLKLDVFTYSTIVKVF----ADAKWWQMALKVKEDMLSAG-VTPNTITWSSLINA 407
            +  G+   D FTYS +V       ++      A+ + E +   G   P+ I ++SLI+A
Sbjct: 491 -KQYGIFP-DNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDA 548

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           C     +++ M LF EM     EP+S    IL++A  +    + AF++F      K  +
Sbjct: 549 CVKFNEIQKGMELFREMKNKQIEPSSVTYGILIKAYGKQNDLNGAFKIFEEMKQKKIPI 607



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 78/382 (20%), Positives = 148/382 (38%), Gaps = 47/382 (12%)

Query: 201 CVNKPDVNLA------IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254
           C+N  D+N        ++ +  +   +I +   ++  G+K+ L  AL  ++  K     P
Sbjct: 402 CINAGDLNRGFQLLNEMKQSQTIQLDEITYNTLIKGCGRKKRLNDALNLFEEMKLIGIKP 461

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVTLNIYVFNSLMN-VNAHDLKF 307
           N     +++D C  C     +   +E++R Q      N T +I V     N  N  +L  
Sbjct: 462 NRISFNSLLDSCVKCNKMNIAWRYFEEMRKQYGIFPDNFTYSILVNGIKTNHSNRDELLR 521

Query: 308 TLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEV--KHLEAKGVLKLDVF 364
            + + + +Q+ G    D   YN L+ AC          E++ E+  K +E   V      
Sbjct: 522 AITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMELFREMKNKQIEPSSV------ 575

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY  ++K +        A K+ E+M    +  N +T+  L++AC     ++QA+   ++M
Sbjct: 576 TYGILIKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQFIDQM 635

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
                  N+     +++   +  Q + A + F     S         Y+   D       
Sbjct: 636 KSQNLPINTVLYTTIIKGFCKLNQTEEAIKYFDLMKQSPKTYPNLITYNSLLD------- 688

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFS------FKPTTTTYNILMKACCT--DYYRVKALM 536
                       V N   +  DK F        KP   T++ L+K  C   +  R+   +
Sbjct: 689 ----------GMVKNGLLNQADKLFQELVDSKIKPDLITFSTLLKGHCRKGNMKRLNETV 738

Query: 537 NEMRTVGLSPNHISWTILIDAC 558
             M  + +SP+     ++++AC
Sbjct: 739 QIMTGLQISPDESLLQLILEAC 760


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 107/269 (39%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+ + + G  A +  +NIL+   C  G+  +AQ ++  +     K  L+  V 
Sbjct: 104 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI----TKWGLRPSVV 159

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  ML++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 160 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEM 219

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  ++                            
Sbjct: 220 LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY---------------------------- 251

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  +   L++EM   
Sbjct: 252 --KQMLSQ-----------------SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMK 292

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
            L P+ I++T LID C   G+++ A + R
Sbjct: 293 ELKPDKITYTTLIDGCCKEGDLDSAFEHR 321



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 146/357 (40%), Gaps = 33/357 (9%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+D+ +F   +  + +   L  A+  Y  +++H        CR +++       +     
Sbjct: 50  RSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 109

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YE++       ++Y FN LM+      D++    V+  + K G+   + SYN L+    
Sbjct: 110 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 169

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 170 RLGDL---DEGFRLKSAMLASGV-QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 225

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++LI+     G V+ AM ++++ML     P+    N L+    +     +A  L
Sbjct: 226 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 285

Query: 456 FRSWT---LSKTQVALGEDYDG---NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
               +   L   ++      DG     D  S  EH+ +    N                 
Sbjct: 286 IDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQEN----------------- 328

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
             +     Y  L+   C +   V A  ++ EM  VGL P+  ++T++I+     G+V
Sbjct: 329 -IRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDV 384



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +  IY+ + SQ+++ ++  +N+L+       DLK   
Sbjct: 226 PNGVTFTTLID--GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 283

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +   M    +  D  +Y  L+  CC  G+   A E     K +  + + +LD   Y+ +
Sbjct: 284 HLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFE---HRKRMIQENI-RLDEVAYTAL 339

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +ML+ G+ P++ T++ +IN     G V +   L +EM + G 
Sbjct: 340 ISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 399

Query: 430 EPNSQCCNILLQA 442
            P+    N+L+  
Sbjct: 400 VPSVVTYNVLMNG 412


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 146/329 (44%), Gaps = 27/329 (8%)

Query: 248 KKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHD 304
           KK+    ++Y   T+I  +CG  G+   +  +Y+++    V+ ++ V+N+++N  + A  
Sbjct: 257 KKNERGQDLYTYSTLIHGLCG-SGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGR 315

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           ++  LE++K M+K G    + SYNIL++   L  N  + + I   +  L  +     D  
Sbjct: 316 IEECLELWKVMEKEGCRT-VVSYNILIRG--LFENAKVDEAI--SIWELLPEKDCCADSM 370

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY  +V       +   AL + E+  +     +T  +SS+IN     G +++   + ++M
Sbjct: 371 TYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQM 430

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
            + GC+PN   CN ++   V A + + A R F +  +SK        Y+   + +S  E 
Sbjct: 431 TKHGCKPNPYVCNAVINGFVRASKLEDALRFFGN-MVSKGCFPTVVTYNTLINGLSKAER 489

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYNILMKACCTDYYRVKALMNEMRTV 542
             +              Y+   +     +KP   TY++LM   C       AL    + +
Sbjct: 490 FSEA-------------YALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL 536

Query: 543 --GLSPNHISWTILIDACGGSGNVEGALQ 569
             G  P+     I+I     SG VE ALQ
Sbjct: 537 EKGFKPDVKMHNIIIHGLCSSGKVEDALQ 565



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 98/451 (21%), Positives = 175/451 (38%), Gaps = 91/451 (20%)

Query: 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE--- 183
           G +D    V K++ E GV+P    D   +  + N   R   +G +E  + L +V+E+   
Sbjct: 279 GNLDGATRVYKEMAENGVSP----DVVVYNTMLNGYLR---AGRIEECLELWKVMEKEGC 331

Query: 184 -----FRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD-----ILFCNFVREFGK 233
                + + ++ L E  +          V+ AI    ++P  D     + +   V    K
Sbjct: 332 RTVVSYNILIRGLFENAK----------VDEAISIWELLPEKDCCADSMTYGVLVHGLCK 381

Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNI 291
              L  AL   + ++      + +   ++I+  G+C  G   +   + + +       N 
Sbjct: 382 NGYLNKALSILEEAENGRGDLDTFAYSSMIN--GLCREGRLDEVAGVLDQMTKHGCKPNP 439

Query: 292 YVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
           YV N+++N  V A  L+  L  + NM   G    + +YN L+     A       E Y  
Sbjct: 440 YVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERF---SEAYAL 496

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           VK +  KG  K ++ TYS ++      K   MAL +    L  G  P+    + +I+   
Sbjct: 497 VKEMLQKG-WKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLC 555

Query: 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469
           ++G VE A+ L+ EM Q  C PN    N L++   +   F+RA +++             
Sbjct: 556 SSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIW------------- 602

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
                  D I                            ++  +P   +YNI +K  C+  
Sbjct: 603 -------DHIL---------------------------QYGLQPDIISYNITLKGLCS-C 627

Query: 530 YRVK---ALMNEMRTVGLSPNHISWTILIDA 557
           +R+      +N+    G+ P  I+W IL+  
Sbjct: 628 HRISDAVGFLNDAVDRGVLPTAITWNILVQG 658



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 112/225 (49%), Gaps = 15/225 (6%)

Query: 242 RAYDASKKHLS-------SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
           + +D +K+ L+       SP+++   T+I+     G    +  +++++  + VT ++  +
Sbjct: 138 KQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACY 197

Query: 295 NSLMN--VNAHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           N L++      D+    E+++ + K   V  ++ SYN+++   C  G    + EI+  +K
Sbjct: 198 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 257

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
             E       D++TYST++     +     A +V ++M   GV+P+ + +++++N    A
Sbjct: 258 KNERGQ----DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRA 313

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           G +E+ + L++ M + GC       NIL++   E  + D A  ++
Sbjct: 314 GRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIW 357



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 308 TLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
            L++++ M ++ G    + SYN LL A   +     A+  +    + E  G L  ++ TY
Sbjct: 72  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFF---LYFETMG-LSPNLQTY 127

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + ++K+    K +  A ++   M   G +P+  ++ +LIN+ A  G +  A+ LF+EM +
Sbjct: 128 NILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPE 187

Query: 427 AGCEPNSQCCNILLQA 442
            G  P+  C NIL+  
Sbjct: 188 RGVTPDVACYNILIDG 203



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 97/207 (46%), Gaps = 5/207 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
           SPN+     +I +      + K++ +   +  Q  + +++ + +L+N  A +  +   L+
Sbjct: 121 SPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALK 180

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M + GV  D+A YNIL+      G+ + A EI+  +  L+   V   ++ +Y+ ++
Sbjct: 181 LFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL--LKGPSVYP-NIPSYNVMI 237

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                   +  + ++   M       +  T+S+LI+    +G ++ A  +++EM + G  
Sbjct: 238 NGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVS 297

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFR 457
           P+    N +L   + A + +    L++
Sbjct: 298 PDVVVYNTMLNGYLRAGRIEECLELWK 324


>gi|255661154|gb|ACU25746.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 426

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYXKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  VT N   +++L+ +   + KF   L ++  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 275

Query: 455 LFR 457
           LF+
Sbjct: 276 LFQ 278



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGVTPNT ++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRA 273



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 106/231 (45%), Gaps = 6/231 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  FGK+    +AL      ++     ++ +   +I++     DY K+ +I+  L+
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYXKAISIFSRLK 71

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
               T ++  +N+++NV   A   +    +   M+  GV  + ASY+ LL         +
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  I+ E++ ++      LD+ T + ++ V+      + A K+   M   G+ PN +++
Sbjct: 132 EALSIFAEMREIKC----LLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           ++L+    +A L  +A+HLF  M +   E N    N ++    +  + ++A
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 98/202 (48%), Gaps = 10/202 (4%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  +  ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++   
Sbjct: 212 RKNIEQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKV 267

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S GV  + + + ++I A   AGLV  A  L  E+ +    P++   
Sbjct: 268 GKLDRAAMLFQKLRSXGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPR 323

Query: 437 NILLQACVEACQFDRAFRLFRS 458
           +I +     A + + A  +FR 
Sbjct: 324 DIAIHILAGAGRIEEATWVFRQ 345


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 142/337 (42%), Gaps = 26/337 (7%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           AL   D   +    P++    T+++   + G   ++  + + +       N   +  ++N
Sbjct: 177 ALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLN 236

Query: 300 V--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
           V   +      +E+ + M++  +  D   Y+I++   C  G+   A  ++ E   +E KG
Sbjct: 237 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE---MEMKG 293

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
           +   ++ TY+ ++  F +A  W    K+  DM+   + PN +T+S LI++    G + +A
Sbjct: 294 ITT-NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREA 352

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
             L +EM+  G  P++     L+    +    D+A ++          V+ G D +  T 
Sbjct: 353 EELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV------DLMVSKGCDPNIRTF 406

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT---TTTYNILMKACCT--DYYRV 532
            I    +     I +              ++ S +     T TYN L++  C        
Sbjct: 407 NILINGYCKANRIDDGLELF---------RKMSLRGVVADTVTYNTLIQGFCELGKLNVA 457

Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           K L  EM +  + PN +++ IL+D    +G  E AL+
Sbjct: 458 KELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALE 494



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 145/350 (41%), Gaps = 62/350 (17%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           FCN     G+  D    LR  D  K+ ++ PN+     +ID     G   ++  +++++ 
Sbjct: 308 FCNA----GRWDDGAKLLR--DMIKRKIN-PNVVTFSVLIDSFVKEGKLREAEELHKEMI 360

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            + +  +   + SL++     + L    ++   M   G   ++ ++NIL+   C A    
Sbjct: 361 HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRID 420

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
              E++   + +  +GV+  D  TY+T+++ F +     +A ++ ++M+S  V PN +T+
Sbjct: 421 DGLELF---RKMSLRGVVA-DTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 476

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
             L++   + G  E+A+ +FE++ ++  E +    NI++     A + D A+ LF S  L
Sbjct: 477 KILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 536

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
                                                             KP   TYNI+
Sbjct: 537 K-----------------------------------------------GVKPGVKTYNIM 549

Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +   C        + L  +M   G +P+  ++ ILI A  G G+   +++
Sbjct: 550 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVK 599



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 26/242 (10%)

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K +E KG+   +++T S ++  F   +   +A      ++  G  PNTIT+S+LIN    
Sbjct: 112 KQMELKGIAH-NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCL 170

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR---SWTLSKTQVA 467
            G V +A+ L + M++ G +P+    N L+     + +   A  L      +      V 
Sbjct: 171 EGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT 230

Query: 468 LGEDYD-----GNT----DRISNMEHKDKQSITNTPNFVPNS--HYSSFDKRFSF----- 511
            G   +     G T    + +  ME ++ +      + + +    + S D  F+      
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME 290

Query: 512 -KPTTT---TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            K  TT   TYNIL+   C    +     L+ +M    ++PN +++++LID+    G + 
Sbjct: 291 MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLR 350

Query: 566 GA 567
            A
Sbjct: 351 EA 352


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 129/296 (43%), Gaps = 30/296 (10%)

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++ ++ +   +  +N++++  + +  ++     +  M+ +G++ D+ +YN LL   C AG
Sbjct: 327 EMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAG 386

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
           N   A  ++G+++    +  L   V TY+ ++  +      + A ++KE+M+  G  P+ 
Sbjct: 387 NQKEALLLFGDLR----RAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDV 442

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            T++ L+    N   +      F+EML  G  P+    N  + A +      ++F+L   
Sbjct: 443 YTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREV 502

Query: 459 WTL---SKTQVALGEDYDG--NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
             L   S   V      DG   T  + + E    Q I+N                   +P
Sbjct: 503 IMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISN-----------------GLQP 545

Query: 514 TTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              TY  L+ A C   +    +   N+M + GL P+ +++T++I A    GN+  A
Sbjct: 546 DCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSA 601



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 95/184 (51%), Gaps = 6/184 (3%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +R  ++++ S+ +  + + +N+ +   +   D+  + ++ + +   G+ +D  +YNIL+ 
Sbjct: 461 TREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILID 520

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  GN   A+E+   +  + + G L+ D  TY+ ++    +  + + A K   DM+S 
Sbjct: 521 GLCKTGNLKDAEEL---MMQMISNG-LQPDCITYTCLIHAHCERGFLREARKFFNDMISD 576

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G+ P+ +T++ +I+A    G +  A   F +ML+ G EPN    N+L+ A     +   A
Sbjct: 577 GLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLA 636

Query: 453 FRLF 456
           +R F
Sbjct: 637 YRHF 640



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 121/311 (38%), Gaps = 59/311 (18%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFT 308
           +P +     +ID  G C  GD  ++R + E++  Q    ++Y +  LM  + N   L  T
Sbjct: 404 APTVLTYNILID--GYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMT 461

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            E +  M   G+  D  +YN  + A    G+   + ++  EV  LE    +  D  TY+ 
Sbjct: 462 REFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLR-EVIMLEG---ISSDTVTYNI 517

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++         + A ++   M+S G+ P+ IT++ LI+A    G + +A   F +M+  G
Sbjct: 518 LIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDG 577

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
             P++    +++ A         A+  FR                        +E     
Sbjct: 578 LPPSAVTYTVIIHAYCRRGNLYSAYGWFRKM----------------------LEE---- 611

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN--EMRTVGLSP 546
                                  +P   TYN+L+ A C       A  +  EM   GL P
Sbjct: 612 ---------------------GVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVP 650

Query: 547 NHISWTILIDA 557
           N  ++T+LID 
Sbjct: 651 NKYTYTLLIDG 661



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 27/243 (11%)

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + + + GV   DV   + +++V  DA  W     V  +ML  G+ P+ +T+++L+++ + 
Sbjct: 185 REMASHGVAP-DVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSK 243

Query: 411 AGLVEQAMHLFEEMLQAG--CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA- 467
            G  ++   L +EM   G  C PN    N+++         + A  L     LSK   + 
Sbjct: 244 EGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMRLSKKASSF 303

Query: 468 ---------LGEDYDGNTDRIS-NMEHKDKQSITNTPN-----FVPNSHYSSFDKRF--- 509
                    L   +    D +   ME++       T N      + +    +   +F   
Sbjct: 304 TYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEM 363

Query: 510 ---SFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNV 564
                 P   TYN L+   C    + +AL+   ++R  GL+P  +++ ILID     G++
Sbjct: 364 RAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDL 423

Query: 565 EGA 567
           E A
Sbjct: 424 EEA 426



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 99/291 (34%), Gaps = 90/291 (30%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG--VLKLDV----- 363
           V+  M +LG+   + +YN LL +    G      +I   +K +EA+G   L  DV     
Sbjct: 218 VHAEMLQLGIEPSIVTYNTLLDSFSKEGRK---DKIDMLLKEMEARGSSCLPNDVTYNVV 274

Query: 364 ----------------------------FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
                                       FTY+ ++       + +    ++ +M + G+ 
Sbjct: 275 IAGLARKGYLEEAAELVEEMRLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIM 334

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P  +T++++I+    +G +E A   F EM   G  P+    N LL    +A     A  L
Sbjct: 335 PTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLL 394

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           F                                                  +R    PT 
Sbjct: 395 FGDL-----------------------------------------------RRAGLAPTV 407

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
            TYNIL+   C   D    + L  EM   G  P+  ++TIL+    GS NV
Sbjct: 408 LTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMK---GSHNV 455


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 123/283 (43%), Gaps = 24/283 (8%)

Query: 286  NVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
             V+L    +N+L+   V+   +    E++  M++LG   D  +Y+++L A    G ++  
Sbjct: 761  GVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDA---MGKSMRI 817

Query: 344  QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            +++    + +  KG  K    TY+TI+     +K    A+ +   ++S G +P   T+  
Sbjct: 818  EDMLKIQEEMHNKGY-KSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGP 876

Query: 404  LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
            L++     G +E A  LF+EML+ GCEPN    NILL     A   ++   LF S     
Sbjct: 877  LLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMV--- 933

Query: 464  TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNIL 521
             +  +  D    T  I  +    +           N   S F +      +P   TYN+L
Sbjct: 934  -EQGMNPDIKSYTVVIDTLCADGRL----------NDGLSYFKQLTDMGLEPDLITYNLL 982

Query: 522  MKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSG 562
            +          +AL   N+M   G++PN  ++  LI   G +G
Sbjct: 983  IHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAG 1025



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 149/360 (41%), Gaps = 41/360 (11%)

Query: 225 CNFVREFGKKRDLVSAL-RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           CN++ E  +    V  + + +D  ++ +   N+    T+    G+ G    +      ++
Sbjct: 104 CNYMLELMRAHGRVGDVAQVFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMK 163

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              + LN Y +N L+   V +   +  ++VYK M   GV+  + +Y++L+ A    G   
Sbjct: 164 EAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAF---GKRR 220

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A+ + G +  +EA+GV + +V++Y+  ++V   A   + A ++   M   G  P+ +T 
Sbjct: 221 DAETVVGLLGEMEARGV-RPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTN 279

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           + LI    +AG +  A  +F +M  +  +P+      LL  C ++           S ++
Sbjct: 280 TVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGD---------SRSV 330

Query: 462 SKTQVALGED--------YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSF 511
           S+   AL  D        Y    D +  +   D+                 FD  K+   
Sbjct: 331 SEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEA-------------LDVFDEMKQKGI 377

Query: 512 KPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            P   +YN L+        + R   L N M   G +PN  +  + I+  G SG    AL+
Sbjct: 378 IPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALK 437



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 90/182 (49%), Gaps = 6/182 (3%)

Query: 254  PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
            PN  I   +++   I GD  K   ++E +  Q +  +I  +  +++    D +    L  
Sbjct: 904  PNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSY 963

Query: 312  YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            +K +  +G+  D+ +YN+L+     +G    A  +Y +   +E KG+   +++TY++++ 
Sbjct: 964  FKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYND---MEKKGIAP-NLYTYNSLIL 1019

Query: 372  VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                A     A K+ E++L+ G  PN  T+++LI   + +G  E A   +  M+  GC P
Sbjct: 1020 YLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRP 1079

Query: 432  NS 433
            NS
Sbjct: 1080 NS 1081



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 122/300 (40%), Gaps = 39/300 (13%)

Query: 206 DVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV 265
           DV   ++   I+P+    + + +  F K      AL  ++    H  +PN Y     I+ 
Sbjct: 367 DVFDEMKQKGIIPQ-QYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINY 425

Query: 266 CGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMAD 323
            G  G+ +K+   YE ++S+ +  ++   N+++        L     V+  ++ +G+  D
Sbjct: 426 HGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPD 485

Query: 324 MASYNILLKACCLAGNTVLAQEIYGE-VKHLEAKGVLKLDVF------------------ 364
             +Y +++K C  A N   A +I+ E +++  A  VL ++                    
Sbjct: 486 NITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFY 545

Query: 365 ------------TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
                       TY+T++         +  +++ E M S    PN IT++++++     G
Sbjct: 546 ELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNG 605

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            V  A+ +   M   GC P+    N ++   V+  + D AF     W   + +  L  DY
Sbjct: 606 EVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAF-----WMFCQMKKVLAPDY 660



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 99/505 (19%), Positives = 193/505 (38%), Gaps = 141/505 (27%)

Query: 115 MVASGIVKSIREGRI-----------DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ 163
           M A G+V ++R   +           + VVG+L ++   GV P    +   + +    C 
Sbjct: 197 MAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRP----NVYSYTI----CI 248

Query: 164 RLL-DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV---NLAIRYACIVPR 219
           R+L  +G +E         E +R+ +++++EE      C  KPDV    + I+  C   R
Sbjct: 249 RVLGQAGRLE---------EAYRI-LRKMEEEG-----C--KPDVVTNTVLIQILCDAGR 291

Query: 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
                          +D+   ++A D     ++    YI  T++D CG  GD      I+
Sbjct: 292 -----------LADAKDVFWKMKASDQKPDRVT----YI--TLLDKCGDSGDSRSVSEIW 334

Query: 280 EDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
             L++     N+  + + ++       +   L+V+  M++ G++    SYN L+     A
Sbjct: 335 NALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKA 394

Query: 338 GNTVLAQEIYGEV--------------------------------KHLEAKGVLKLDVFT 365
                A E++  +                                + +++KG++  DV  
Sbjct: 395 DRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVP-DVVA 453

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
            + ++   A      MA +V  ++ + G++P+ IT++ +I  C+ A   ++AM +F EM+
Sbjct: 454 GNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMI 513

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
           +  C P+    N L+    +A + + A+++F                             
Sbjct: 514 ENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYEL-------------------------- 547

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVG 543
                                K  + +PT  TYN L+     +     V  L+  M +  
Sbjct: 548 ---------------------KEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNS 586

Query: 544 LSPNHISWTILIDACGGSGNVEGAL 568
             PN I++  ++D    +G V  AL
Sbjct: 587 FPPNIITYNTVLDCLCKNGEVNYAL 611



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 6/189 (3%)

Query: 270  GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASY 327
            G+   + A+++++       N  ++N L+N    A D +   E++++M + G+  D+ SY
Sbjct: 885  GNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSY 944

Query: 328  NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             +++   C  G      +     K L   G L+ D+ TY+ ++     +   + AL +  
Sbjct: 945  TVVIDTLCADGRL---NDGLSYFKQLTDMG-LEPDLITYNLLIHGLGKSGRLEEALSLYN 1000

Query: 388  DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            DM   G+ PN  T++SLI     AG   +A  ++EE+L  G +PN    N L++    + 
Sbjct: 1001 DMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSG 1060

Query: 448  QFDRAFRLF 456
              + AF  +
Sbjct: 1061 SPENAFAAY 1069



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 107/265 (40%), Gaps = 61/265 (23%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVL--AQEIYGEVKHLEAKGVLKLDVFTYS 367
           E+ K  + LGV     SYN L+  C L    ++  A+E++ E+K L        D FTY 
Sbjct: 752 ELVKKFENLGVSLKTGSYNALI--CGLVDEDLIDIAEELFSEMKRLGCDP----DEFTYH 805

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            I+     +   +  LK++E+M + G     +T++++I+    + ++++A++L+ +++  
Sbjct: 806 LILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSE 865

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
           G  P       LL   ++                           DGN +        D 
Sbjct: 866 GFSPTPCTYGPLLDGLLK---------------------------DGNIE--------DA 890

Query: 488 QSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYNILMKA--CCTDYYRVKALMNEMRTVG 543
           +++              FD+      +P    YNIL+       D  +V  L   M   G
Sbjct: 891 EAL--------------FDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQG 936

Query: 544 LSPNHISWTILIDACGGSGNVEGAL 568
           ++P+  S+T++ID     G +   L
Sbjct: 937 MNPDIKSYTVVIDTLCADGRLNDGL 961



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 6/156 (3%)

Query: 253  SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
            +P++     +ID     G      + ++ L    +  ++  +N L++    +  L+  L 
Sbjct: 938  NPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALS 997

Query: 311  VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            +Y +M+K G+  ++ +YN L+     AG    A ++Y E   L AKG  K +VFTY+ ++
Sbjct: 998  LYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEE---LLAKG-WKPNVFTYNALI 1053

Query: 371  KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
            + ++ +   + A      M+  G  PN+ T+  L N
Sbjct: 1054 RGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQLPN 1089


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 86/151 (56%), Gaps = 7/151 (4%)

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           L+  N T +I +   L N+N   ++  ++ + + ++ G++ D+ +Y++++  CC A  T 
Sbjct: 584 LKPDNYTYSILIC-GLFNMN--KVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTE 640

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
             QE + E   + +K V + +   Y+ +++ +  +    MAL+++EDM   G++PN+ T+
Sbjct: 641 EGQEFFDE---MMSKNV-QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATY 696

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +SLI   +    VE+A  LFEEM   G EPN
Sbjct: 697 TSLIKGMSIISRVEEAKLLFEEMRMEGLEPN 727



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 130/318 (40%), Gaps = 59/318 (18%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           SP   +  T+I   G+C  G + K+  ++    ++   ++    N+L++    A  L   
Sbjct: 480 SPGGGLLTTLIS--GLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEA 537

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
             + K +   G + D  SYN L+  CC  G   L  E +  +  +  +G LK D +TYS 
Sbjct: 538 FRIQKEILGRGCVMDRVSYNTLISGCC--GKKKL-DEAFMFLDEMVKRG-LKPDNYTYSI 593

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++    +    + A++  +D    G+ P+  T+S +I+ C  A   E+    F+EM+   
Sbjct: 594 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKN 653

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            +PN+   N L++A      + R+ RL  +  L +                 +M+HK   
Sbjct: 654 VQPNTVVYNHLIRA------YCRSGRLSMALELRE-----------------DMKHK--- 687

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSP 546
                                   P + TY  L+K  +  +     K L  EMR  GL P
Sbjct: 688 ---------------------GISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 726

Query: 547 NHISWTILIDACGGSGNV 564
           N   +T LID  G  G +
Sbjct: 727 NVFHYTALIDGYGKLGQM 744



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 102/199 (51%), Gaps = 12/199 (6%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A++ +D  K++   P++Y    +ID C       + +  ++++ S+NV  N  V+N L+ 
Sbjct: 607 AIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 666

Query: 300 V--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
               +  L   LE+ ++M+  G+  + A+Y  L+K   +      A+ ++ E++ +E   
Sbjct: 667 AYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR-MEG-- 723

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVK---EDMLSAGVTPNTITWSSLINACANAGLV 414
            L+ +VF Y+ ++  +   K  QM +KV+    +M S  V PN IT++ +I   A  G V
Sbjct: 724 -LEPNVFHYTALIDGY--GKLGQM-VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNV 779

Query: 415 EQAMHLFEEMLQAGCEPNS 433
            +A  L  EM + G  P+S
Sbjct: 780 TEASRLLNEMREKGIVPDS 798



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 153/384 (39%), Gaps = 52/384 (13%)

Query: 221 DILFCNFVR--EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           +IL  + VR  EF K         A+D   K +S P++Y+  T I+     G   ++  +
Sbjct: 243 NILLTSLVRANEFQK------CCEAFDVVCKGVS-PDVYLFTTAINAFCKGGKVEEAVKL 295

Query: 279 YEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           +  +    V  N+  FN++++       +D  F  +  + M + G+   + +Y+IL+K  
Sbjct: 296 FSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFK--EKMVERGMEPTLITYSILVKGL 353

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
             A       + Y  +K +  KG    +V  Y+ ++  F +A     A+++K+ M+S G+
Sbjct: 354 TRAKRI---GDAYFVLKEMTKKG-FPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGL 409

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           +  + T+++LI      G  + A  L +EML  G   N      ++        FD A R
Sbjct: 410 SLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALR 469

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI----------------TNTPNFVP 498
                 L       G      T  IS +    K S                 T T N + 
Sbjct: 470 FVGEMLLRNMSPGGGL----LTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL 525

Query: 499 NS--HYSSFDKRFSFKPTT---------TTYNILMKACCTDYYRVKALM--NEMRTVGLS 545
           +        D+ F  +             +YN L+  CC      +A M  +EM   GL 
Sbjct: 526 HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLK 585

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
           P++ +++ILI        VE A+Q
Sbjct: 586 PDNYTYSILICGLFNMNKVEEAIQ 609



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 37/260 (14%)

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             L+V+  +   G+     + NILL +   A       E +  V     KGV   DV+ +
Sbjct: 222 LALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV----CKGV-SPDVYLF 276

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T +  F      + A+K+   M  AGV PN +T++++I+     G  ++A    E+M++
Sbjct: 277 TTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE 336

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G EP     +IL++    A +   A+ + +  T         + +  N    +N+    
Sbjct: 337 RGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMT--------KKGFPPNVIVYNNL---- 384

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKP---------TTTTYNILMKACCTDYYRVKA--L 535
                   +F+      S +K    K          T++TYN L+K  C +     A  L
Sbjct: 385 ------IDSFI---EAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERL 435

Query: 536 MNEMRTVGLSPNHISWTILI 555
           + EM ++G + N  S+T +I
Sbjct: 436 LKEMLSIGFNVNQGSFTSVI 455


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 118/262 (45%), Gaps = 14/262 (5%)

Query: 212 RYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271
           R   IV      F + +R F +      +++ +   K H  SP++    +++ +    G 
Sbjct: 140 RSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGR 199

Query: 272 YMKSRAIYED-LRSQNVTLNIYVFNSL-----MNVNAHDLKFTLEVYKNMQKLGVMADMA 325
              ++ +Y++ L +  VT + + FN L     MN    D      ++ ++ + G   D+ 
Sbjct: 200 TNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDD---GFRIFNDLSRFGCEPDVV 256

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALK 384
           +YN L+   C AG   +A   Y  VK +  K V L  +V TY+T+++ +   +  + AL 
Sbjct: 257 TYNTLVDGLCRAGKVTVA---YNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALA 313

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC-EPNSQCCNILLQAC 443
           V E+M++ G+  N IT+++LI     A   E+   + E     G   P++   N L+   
Sbjct: 314 VFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCH 373

Query: 444 VEACQFDRAFRLFRSWTLSKTQ 465
             A   D A ++F   +  K Q
Sbjct: 374 CHAGNLDDALKVFERMSELKIQ 395



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 25/228 (10%)

Query: 345 EIYGEVKHL------------EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           EI G  +HL             ++G++KL+   ++++++ F  A  +Q ++KV   M S 
Sbjct: 119 EILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSH 178

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCNILLQACVEACQFDR 451
           GV+P+ +T++SL+      G    A  +++EML   G  P++   NIL++        D 
Sbjct: 179 GVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDD 238

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
            FR+F       ++     D       +  +    K  +T   N V      S D     
Sbjct: 239 GFRIFNDL----SRFGCEPDVVTYNTLVDGLCRAGK--VTVAYNVVKGMGKKSVD----L 288

Query: 512 KPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDA 557
            P   TY  L++  C      KAL    EM   GL  N+I++  LI  
Sbjct: 289 NPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKG 336



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 106/239 (44%), Gaps = 18/239 (7%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN--IYVFN 295
             R ++   +    P++    T++D  G+C  G    +  + + +  ++V LN  +  + 
Sbjct: 239 GFRIFNDLSRFGCEPDVVTYNTLVD--GLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYT 296

Query: 296 SLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           +L+       +++  L V++ M   G+ A+  +YN L+K  C A      ++I   ++  
Sbjct: 297 TLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDI---LEGT 353

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
              G    D  T++T++     A     ALKV E M    + P++ T+S+L+ +    G 
Sbjct: 354 AGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGH 413

Query: 414 VEQAMHLFEEMLQA-------GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
            E+A  L +++L+        GC+P     N + +   E  +  +A + FR      TQ
Sbjct: 414 YEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQ 472


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 135/319 (42%), Gaps = 34/319 (10%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV 320
           V G+C  G    +R + +D+    V+LN   +NSL++  V   D     E+ + M+  G+
Sbjct: 184 VDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGI 243

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
            A + +Y IL+ +   A +    + ++ E+K     G    DV+ Y+ ++  +  A   +
Sbjct: 244 EATVGTYTILVDSLSTARDISKVEALFNEMKANNVVG----DVYLYTAVINAYCRAGNMR 299

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A KV ++ +  GV PN  T+  LIN     G +E A  L  +M   G   N    N ++
Sbjct: 300 RAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMI 359

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD-----RISNM-EHKDKQSITNTP 494
                    D A ++     + K  V L + Y  NT      R++ + E K    I    
Sbjct: 360 DGYCRKGMVDDALKI--KAAMEKMGVEL-DIYTYNTLACGLCRVNRLDEAKTLLHIMIEM 416

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWT 552
             VPN                 TY  L+   C D   V+A  L  EM   G +P+ +++ 
Sbjct: 417 GVVPN---------------YVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYN 461

Query: 553 ILIDACGGSGNVEGALQCR 571
           ++ID     G++  A + R
Sbjct: 462 VMIDGYTKKGSIREAERFR 480



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 18/210 (8%)

Query: 255 NMYICRTIID-VC--GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM----NVNAHDLKF 307
           N  I  T+ID  C  G+  D +K +A  E +    V L+IY +N+L      VN  D   
Sbjct: 351 NQIIFNTMIDGYCRKGMVDDALKIKAAMEKM---GVELDIYTYNTLACGLCRVNRLDEAK 407

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
           TL     M ++GV+ +  +Y  L+   C  G+ V A+ ++ E+     KG     V TY+
Sbjct: 408 TL--LHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAE---KGATP-SVVTYN 461

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQ 426
            ++  +      + A + +++M   G  P+  T++SL++  C N G V+ A+ LFEEM Q
Sbjct: 462 VMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVN-GKVDVALKLFEEMKQ 520

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            G EPN      L+    +  + + AF+L+
Sbjct: 521 RGTEPNVVAYTALISGLAKEGRSEAAFQLY 550



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 79/156 (50%), Gaps = 6/156 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN     T+I +    GD +++R ++ ++  +  T ++  +N +++       ++     
Sbjct: 420 PNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERF 479

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            K M+K G + D+ +Y  L+   C+ G   +A +++ E+K    +G  + +V  Y+ ++ 
Sbjct: 480 RKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQ---RGT-EPNVVAYTALIS 535

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             A     + A ++ +DML AG+ P+   +S+L+ +
Sbjct: 536 GLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGS 571


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 139/361 (38%), Gaps = 49/361 (13%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN+   RT++        +   + I   + ++    N  +FNSL++   NA D  +  ++
Sbjct: 304 PNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKL 363

Query: 312 YKNMQKLGVMADMASYNILLKACC---------------------LAGNTVLA------- 343
           +  M   G      +YNI + + C                     LA + VL        
Sbjct: 364 FNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANF 423

Query: 344 ----------QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
                     ++ +  +K +  KG +  D  TY+ ++     AK  + +  + ++M  AG
Sbjct: 424 SRCLCGVGKFEKAFQILKEMMRKGFVP-DTSTYTKVITFLCQAKKVEKSFLLFQEMKRAG 482

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           V P+  T++ LI++   AGL+EQA   F+EM   GC PN      LL A +++ Q  +A 
Sbjct: 483 VNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAH 542

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK-----QSITNTPNFVPNSHYSSFDKR 508
            +F    +          Y    D +       K     + +  T   V +  Y   +  
Sbjct: 543 DIFHR-MVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDT 601

Query: 509 FSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
            +  P   TY  L+   C       A  L++ M   G  PN I +  LID     G ++ 
Sbjct: 602 CTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDN 661

Query: 567 A 567
           A
Sbjct: 662 A 662



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 132/336 (39%), Gaps = 51/336 (15%)

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN---- 299
           +   K+   +P++Y    +ID     G   ++R+ ++++RS   + N+  + +L++    
Sbjct: 475 FQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLK 534

Query: 300 ----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
               + AHD      ++  M       +  +Y+ L+   C AG    A E+Y   K +  
Sbjct: 535 SKQLIQAHD------IFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYE--KLIGT 586

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
            G ++ D +                      E   +  + PN +T+ +LI+    A  V 
Sbjct: 587 SGNVESDFYF---------------------EGNDTCTIAPNVVTYGALIDGLCKAQKVS 625

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
            A  L + ML AGCEPN    + L+    +  + D A  +F    L  T+          
Sbjct: 626 DAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVF----LRMTKCGYLPSVHTY 681

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVK 533
           T  I  M    +  +      V +   +      S  P   TY  ++       +  +  
Sbjct: 682 TSLIDRMFKDGRLDLAMK---VLSEMLND-----SCNPNVVTYTAMIDGLSKVGEIEKAL 733

Query: 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            L++ M   G SPN +++T LID  G +G  + +L+
Sbjct: 734 NLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLK 769



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 113/257 (43%), Gaps = 28/257 (10%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           + +   +  + K + L+ A   +         PN      +ID  G+C  G+  K+  +Y
Sbjct: 523 VTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALID--GLCKAGEIQKACEVY 580

Query: 280 EDL--RSQNVTLNIY--------------VFNSLMN--VNAHDLKFTLEVYKNMQKLGVM 321
           E L   S NV  + Y               + +L++    A  +    E+   M   G  
Sbjct: 581 EKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCE 640

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV-KVFADAKWWQ 380
            +   Y+ L+   C  G    AQE++     +   G L   V TY++++ ++F D +   
Sbjct: 641 PNQIVYDALIDGFCKIGKIDNAQEVF---LRMTKCGYLP-SVHTYTSLIDRMFKDGRL-D 695

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           +A+KV  +ML+    PN +T++++I+  +  G +E+A++L   M + GC PN      L+
Sbjct: 696 LAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALI 755

Query: 441 QACVEACQFDRAFRLFR 457
               +  + D + +LF+
Sbjct: 756 DGLGKTGKADASLKLFK 772



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 96/213 (45%), Gaps = 11/213 (5%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           +PN+     +ID     G+  K+  +   +  +  + N+  + +L++      K   +L+
Sbjct: 710 NPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLK 769

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++K M   G   +  +Y +L+  CC AG    A  +  E+KH      L+     Y   V
Sbjct: 770 LFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQ----GYHCAV 825

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           + F  +K +  +L + E+M S    P    +  LI++ + AG +E A+ L +E+++    
Sbjct: 826 QGF--SKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSS 883

Query: 431 PNSQCCNI---LLQACVEACQFDRAFRLFRSWT 460
            N     +   L+QA   A Q + AF L+   T
Sbjct: 884 LNMTSTGMYASLIQALCLASQVEEAFTLYTEMT 916



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 10/208 (4%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           +PN+     +ID  G+C     S A  + + + +     N  V+++L++       +   
Sbjct: 605 APNVVTYGALID--GLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNA 662

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            EV+  M K G +  + +Y  L+      G   LA ++  E+ +         +V TY+ 
Sbjct: 663 QEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNP----NVVTYTA 718

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++   +     + AL +   M   G +PN +T+++LI+     G  + ++ LF++M   G
Sbjct: 719 MIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKG 778

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
           C PN     +L+  C  A   D A  L 
Sbjct: 779 CAPNYVTYRVLINHCCAAGLLDEAHLLL 806



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 121/307 (39%), Gaps = 40/307 (13%)

Query: 294 FNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L+ V  +A  ++    V K M   G   D ++     +A C  G        + +  
Sbjct: 207 YNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVGR-------WADAL 259

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
           ++  K    LD    + ++    +A  +  A+     M      PN +T+ +L++     
Sbjct: 260 NMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKK 319

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL--- 468
                   +   M+  GC PN    N L+     A  +  A++LF   T   +       
Sbjct: 320 KQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAY 379

Query: 469 --------GEDYDGNTDRISNME--HKDKQSITNTPNFVPNSHYS-------SFDKRF-- 509
                   G++   N + +  +E  +++  + +   N V  +++S        F+K F  
Sbjct: 380 NIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQI 439

Query: 510 -------SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGG 560
                   F P T+TY  ++   C      K+  L  EM+  G++P+  ++TILID+   
Sbjct: 440 LKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCK 499

Query: 561 SGNVEGA 567
           +G +E A
Sbjct: 500 AGLIEQA 506



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 88/214 (41%), Gaps = 10/214 (4%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDY 272
           C +    + +   +    K + +  A    DA       PN  +   +ID  G C  G  
Sbjct: 602 CTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALID--GFCKIGKI 659

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNIL 330
             ++ ++  +       +++ + SL++    D  L   ++V   M       ++ +Y  +
Sbjct: 660 DNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAM 719

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +      G    A  +   +  +E KG    +V TY+ ++           +LK+ + M 
Sbjct: 720 IDGLSKVGEIEKALNL---LSLMEEKGC-SPNVVTYTALIDGLGKTGKADASLKLFKQMN 775

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           S G  PN +T+  LIN C  AGL+++A  L +EM
Sbjct: 776 SKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEM 809



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 25/205 (12%)

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
           W  AL+    +   G  P+ +T+++L+   A+AG VE    + +EM  +G   +      
Sbjct: 185 WDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGY 244

Query: 439 LLQACVEACQFDRAFRL-----FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
             QA  +  ++  A  +     F   T+  TQ+  G       +   +  H+ + + +  
Sbjct: 245 FAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCN-SCI 303

Query: 494 PNFVP-NSHYSSFDKRFSF---------------KPTTTTYNILMKACCT--DYYRVKAL 535
           PN V   +  S F K+  F                P  + +N L+   C   DY     L
Sbjct: 304 PNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKL 363

Query: 536 MNEMRTVGLSPNHISWTILIDA-CG 559
            N M T G  P ++++ I I + CG
Sbjct: 364 FNRMTTCGSPPGYVAYNIFIGSICG 388


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 137/339 (40%), Gaps = 53/339 (15%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G   K+ +I +++ S  +  N   ++ L+N  ++ HD      +++ M + G+  D A Y
Sbjct: 452 GKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIY 511

Query: 328 NILLKACCLAGN-------------------------TVLAQEIYGEVKH-LEAKGVLKL 361
           N+L++A C  GN                          +    + G++K  L+   +++ 
Sbjct: 512 NLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRR 571

Query: 362 D-----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
                 V TY+ ++         Q A+ V + M  AG+TPN  T++ ++   A +G + +
Sbjct: 572 SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGK 631

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK---TQVALGEDYD 473
           A   F ++ ++G + +      LL+AC ++ +   A  + R  +  K            D
Sbjct: 632 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILID 691

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYR 531
           G   R    E +D           PN H               TY   + ACC   D  R
Sbjct: 692 GWARRGDVWEAEDLMKQMKEDGVPPNIH---------------TYTSYINACCKAGDMQR 736

Query: 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
            + ++ EM  VGL PN  ++T LI         + AL+C
Sbjct: 737 AEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKC 775



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 114/273 (41%), Gaps = 41/273 (15%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +  F K  ++  A+   +  +K    P+    R II+   + GD   +    + +R   
Sbjct: 514 LIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSG 573

Query: 287 VTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
               +  +N+L++  V  H ++  + V   M   G+  +  +Y I+++    +G+   A 
Sbjct: 574 CVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAF 633

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK------------------ 386
           E + ++K    +  LKLDV+ Y T+++    +   Q AL V                   
Sbjct: 634 EYFTKIK----ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 689

Query: 387 -------------EDMLSA----GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
                        ED++      GV PN  T++S INAC  AG +++A  + EEM+  G 
Sbjct: 690 IDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGL 749

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           +PN +    L++        DRA + F    L+
Sbjct: 750 KPNVKTYTTLIKGWARVSLPDRALKCFEEMKLA 782



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/379 (20%), Positives = 146/379 (38%), Gaps = 100/379 (26%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327
           GD   +RA +E++R++ +  N +VF SL++  A   D++  L   + M+  G+   + +Y
Sbjct: 277 GDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTY 336

Query: 328 NILL-----------------------------------KACCLAGNTVLAQEIYGEVKH 352
           +IL+                                    A C +GN   A+E+  E   
Sbjct: 337 SILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVCE--- 393

Query: 353 LEAKGV----------------------------------LKLDVFTYSTIVKVFADAKW 378
           +E  G+                                   K  + +Y  ++ ++     
Sbjct: 394 MEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGK 453

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              AL + ++M S G+  N  T+S LIN   +      A  +FEEML++G +P+    N+
Sbjct: 454 VAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNL 513

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVA------LGEDYDGNTDRISNMEHKDKQSITN 492
           L++A  +    DRA  +       + Q +      + E Y    D  S ++  D      
Sbjct: 514 LIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLD------ 567

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY--YRVKALMNEMRTVGLSPNHIS 550
                         +R    PT  TYN L+      +   R  +++++M   G++PN  +
Sbjct: 568 ------------LMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHT 615

Query: 551 WTILIDACGGSGNVEGALQ 569
           +TI++     SG++  A +
Sbjct: 616 YTIIMRGYAASGDIGKAFE 634



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 94/192 (48%), Gaps = 6/192 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +PN +    I+      GD  K+   +  ++   + L++Y++ +L+     +  ++  L 
Sbjct: 610 TPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALA 669

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + M    +  +   YNIL+      G+   A+++   +K ++  GV   ++ TY++ +
Sbjct: 670 VTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDL---MKQMKEDGVPP-NIHTYTSYI 725

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A   Q A KV E+M+  G+ PN  T+++LI   A   L ++A+  FEEM  AG +
Sbjct: 726 NACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLK 785

Query: 431 PNSQCCNILLQA 442
           P+    + L+ +
Sbjct: 786 PDEASYHCLVTS 797



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 91/182 (50%), Gaps = 6/182 (3%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           +R +    D+  A   +   K+     ++YI  T++  C   G    + A+  ++  Q +
Sbjct: 620 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKI 679

Query: 288 TLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             N +++N L++  A   D+    ++ K M++ GV  ++ +Y   + ACC AG+   A++
Sbjct: 680 PRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEK 739

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +  E+  +     LK +V TY+T++K +A       ALK  E+M  AG+ P+  ++  L+
Sbjct: 740 VIEEMVDVG----LKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV 795

Query: 406 NA 407
            +
Sbjct: 796 TS 797


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 102/227 (44%), Gaps = 33/227 (14%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +P++Y    +I     CG   K+  I+ ++R   V  ++  + +++        +   +E
Sbjct: 391 APDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 450

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV-------------------- 350
            +  M   GV  D  +Y+ L++  C  G+ + A+E+  E+                    
Sbjct: 451 KFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLC 510

Query: 351 ---KHLEAKGVLKLDV--------FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              + ++A+ +  L V          YS ++  +      + AL+V + M+SAG+ PN +
Sbjct: 511 KLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDV 570

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
            + +L+N     G +++ + LF EMLQ G +P++   NI++    EA
Sbjct: 571 VYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEA 617



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 149/356 (41%), Gaps = 32/356 (8%)

Query: 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--V 300
           A  A    + SP  +    ++D C        + A +  L    + +NI + N L+    
Sbjct: 98  ASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFC 157

Query: 301 NAHDLKFTLEVY-KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
            A      L++      +LG + D+ SY+ILLK+ C  G +  A ++   +   E   V 
Sbjct: 158 EAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA--EGGAVC 215

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             DV  YST++  F        A  + ++M+  G+ P+ +T+SS+++A   A  +++A  
Sbjct: 216 SPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEA 275

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW----------TLSKTQVAL- 468
              +M+  G  PN+   N L+       Q+  A R+F+            TLS    +L 
Sbjct: 276 FLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 335

Query: 469 --GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS---------FDKRF--SFKPTT 515
             G+  +   D    M  K +     +   + N + +          FD        P  
Sbjct: 336 KYGKIKEAR-DVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDI 394

Query: 516 TTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            T+N+L+KA   C    +   + NEMR  G+ P+ +++  +I A    G ++ A++
Sbjct: 395 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 450



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 137/322 (42%), Gaps = 31/322 (9%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+ A    + ++ V  N + +N+L+    +    K  + V+K M++  ++ D+ + ++L+
Sbjct: 272 KAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 331

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            + C  G    A++++     +  KG    +VF+Y+ ++  +A          + + ML 
Sbjct: 332 GSLCKYGKIKEARDVFDT---MAMKGQ-NPNVFSYTIMLNGYATKGCLVDMTDLFDLMLG 387

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+ P+  T++ LI A AN G++++AM +F EM   G +P+      ++ A     + D 
Sbjct: 388 DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDD 447

Query: 452 AFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQS-ITNTPNFVPNSHYSS--- 504
           A   F       ++  + A      G     S ++ K+  S I N    +    +SS   
Sbjct: 448 AMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIIN 507

Query: 505 --------------FD--KRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
                         FD        PT   Y++LM   C      KAL   + M + G+ P
Sbjct: 508 NLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEP 567

Query: 547 NHISWTILIDACGGSGNVEGAL 568
           N + +  L++     G ++  L
Sbjct: 568 NDVVYGTLVNGYCKIGRIDEGL 589



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 117/263 (44%), Gaps = 29/263 (11%)

Query: 216 IVPRADILFCNFVREFGKKRDLVS----------------ALRAYDASKKHLSSPNMYIC 259
           ++ +A I+F N +R+ G K D+V+                A+  ++       +P+ Y  
Sbjct: 409 MLDKAMIIF-NEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 467

Query: 260 RTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE---VYKN 314
             +I   G C  G  +K++ +  ++ +  + L+I  F+S++N N   L   ++   ++  
Sbjct: 468 HCLIQ--GFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIIN-NLCKLGRVMDAQNIFDL 524

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
              +G+      Y++L+   CL G    A  ++     + + G+   DV  Y T+V  + 
Sbjct: 525 TVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDA---MVSAGIEPNDV-VYGTLVNGYC 580

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                   L +  +ML  G+ P+TI ++ +I+    AG    A   F EM ++G   N  
Sbjct: 581 KIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKC 640

Query: 435 CCNILLQACVEACQFDRAFRLFR 457
             NI+L+   +   FD A  LF+
Sbjct: 641 TYNIVLRGLFKNRCFDEAIFLFK 663



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 106/218 (48%), Gaps = 12/218 (5%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           ALR +DA       PN  +  T+++  G C  G   +  +++ ++  + +  +  ++N +
Sbjct: 553 ALRVFDAMVSAGIEPNDVVYGTLVN--GYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 610

Query: 298 MNVNAHDLKFTLEV---YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           ++    +   T+     +  M + G+  +  +YNI+L+   L  N    + I+   K L 
Sbjct: 611 ID-GLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRG--LFKNRCFDEAIF-LFKELR 666

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
           A  V K+++ T +T++      +  + A  +   +  +G+ P  +T+S +I      GLV
Sbjct: 667 AMNV-KINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLV 725

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           E+A  +F  M  AGCEP+S+  N +++  ++  +  RA
Sbjct: 726 EEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRA 763


>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
 gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 143/342 (41%), Gaps = 31/342 (9%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +P++    T+I+     G+ M++R +++ ++      N+  +N+LMN  V A D+     
Sbjct: 216 TPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANM 275

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +Y+ M+   V  D  ++NIL+      G     +E    +    ++         Y+  V
Sbjct: 276 LYEEMKSKAVAPDCTTFNILVAGHYRYGR----EEDRDRLLRDLSQSGSLSISSLYNICV 331

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                A W   A+K  EDML  G+TP  + ++S+I A + AGL E+A   +  M++ G  
Sbjct: 332 SGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLF 391

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF------------RSWTLSKTQVALGEDYDGNTDR 478
           P+S  C+ L+    +  +   A  L              ++TL         D  G    
Sbjct: 392 PSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSL 451

Query: 479 ISNME----HKDKQSITNTPNFVP-----NSHYSSFDK--RFSFKPTTTTYNILMKACCT 527
            + ME    H D  + +   N +      +  Y  F +  +  F P    YN L++  C 
Sbjct: 452 WNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCN 511

Query: 528 DYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                +ALM   EM   GL P+  +  I+I+     G ++ A
Sbjct: 512 SGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSA 553



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 143/359 (39%), Gaps = 44/359 (12%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVT 288
           +G++ D    LR    S     S    IC     V G+C  G   ++    ED+  + +T
Sbjct: 302 YGREEDRDRLLRDLSQSGSLSISSLYNIC-----VSGLCWAGWLDEAMKFLEDMLEKGIT 356

Query: 289 LNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
             +  FNS++     A   +   + Y+ M K G+     + + L+           A+++
Sbjct: 357 PTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIMGLSKLWRLQEARDL 416

Query: 347 YGE--VKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
             E  V+ L   K    L +  Y  +  V      W        +M   G+ P+ + +S+
Sbjct: 417 LYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWN-------EMEGRGIHPDAVAFSA 469

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--- 460
            IN  +  GLV++A  +F +M + G  PN+   N L++    + +   A  L R      
Sbjct: 470 FINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMARKG 529

Query: 461 -----LSKTQVALGEDYDGN----TDRISNMEHKDKQSITNTPNFVPNSHYSSFD----- 506
                 +   +  G   +G     +D   NM H        T N + + +  +FD     
Sbjct: 530 LLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTD 589

Query: 507 ----KRFS--FKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDA 557
               K ++  + P  TTYNI +   CT     +A+M   E+ + G+ P+ +++  +++ 
Sbjct: 590 EVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTVMNG 648



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 7/175 (4%)

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           LR  +  + I +F  L+ +  H   + L   + M   G      ++N ++   C  G+  
Sbjct: 110 LRPSSSAITI-LFKLLLRIGDHGSVWKL--LRGMIHQGPRPCNRNFNAVILGFCRKGHVK 166

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
           + + +   ++  + +     DV+ Y+ ++  +        AL     M+  G TP+ +T+
Sbjct: 167 VGESLLCVMQKFKCQP----DVYAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTF 222

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            ++INA  N G + +A +LF+ M +AG  PN  C N L+   V+A    +A  L+
Sbjct: 223 GTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLY 277



 Score = 38.9 bits (89), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 87/206 (42%), Gaps = 43/206 (20%)

Query: 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLAGNTVLAQEI 346
           ++Y +N L+N      + T +    M+ +   G    + ++  ++ A C  GN + A+ +
Sbjct: 183 DVYAYNILINAYCTRGQ-TFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNL 241

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI- 405
           +  +K  EA  +   +V  Y+T++  +  A+    A  + E+M S  V P+  T++ L+ 
Sbjct: 242 FDGMK--EAGHIP--NVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVA 297

Query: 406 ------------------------------NACAN----AGLVEQAMHLFEEMLQAGCEP 431
                                         N C +    AG +++AM   E+ML+ G  P
Sbjct: 298 GHYRYGREEDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITP 357

Query: 432 NSQCCNILLQACVEACQFDRAFRLFR 457
                N ++ A   A   ++A++ +R
Sbjct: 358 TVVAFNSIIAAYSRAGLEEKAYKAYR 383


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 123/283 (43%), Gaps = 24/283 (8%)

Query: 286  NVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
             V+L    +N+L+   V+   +    E++  M++LG   D  +Y+++L A    G ++  
Sbjct: 761  GVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDA---MGKSMRI 817

Query: 344  QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            +++    + +  KG  K    TY+TI+     +K    A+ +   ++S G +P   T+  
Sbjct: 818  EDMLKIQEEMHNKGY-KSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGP 876

Query: 404  LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
            L++     G +E A  LF+EML+ GCEPN    NILL     A   ++   LF S     
Sbjct: 877  LLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMV--- 933

Query: 464  TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNIL 521
             +  +  D    T  I  +    +           N   S F +      +P   TYN+L
Sbjct: 934  -EQGMNPDIKSYTVVIDTLCADGRL----------NDGLSYFKQLTDMGLEPDLITYNLL 982

Query: 522  MKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSG 562
            +          +AL   N+M   G++PN  ++  LI   G +G
Sbjct: 983  IHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAG 1025



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 149/360 (41%), Gaps = 41/360 (11%)

Query: 225 CNFVREFGKKRDLVSAL-RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           CN++ E  +    V  + + +D  ++ +   N+    T+    G+ G    +      ++
Sbjct: 104 CNYMLELMRAHGRVGDVAQVFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMK 163

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              + LN Y +N L+   V +   +  ++VYK M   GV+  + +Y++L+ A    G   
Sbjct: 164 EAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAF---GKRR 220

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A+ + G +  +EA+GV + +V++Y+  ++V   A   + A ++   M   G  P+ +T 
Sbjct: 221 DAETVVGLLGEMEARGV-RPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTN 279

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           + LI    +AG +  A  +F +M  +  +P+      LL  C ++           S ++
Sbjct: 280 TVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGD---------SRSV 330

Query: 462 SKTQVALGED--------YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSF 511
           S+   AL  D        Y    D +  +   D+                 FD  K+   
Sbjct: 331 SEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEA-------------LDVFDEMKQKGI 377

Query: 512 KPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            P   +YN L+        + R   L N M   G +PN  +  + I+  G SG    AL+
Sbjct: 378 IPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALK 437



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 90/182 (49%), Gaps = 6/182 (3%)

Query: 254  PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
            PN  I   +++   I GD  K   ++E +  Q +  +I  +  +++    D +    L  
Sbjct: 904  PNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSY 963

Query: 312  YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            +K +  +G+  D+ +YN+L+     +G    A  +Y +   +E KG+   +++TY++++ 
Sbjct: 964  FKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYND---MEKKGIAP-NLYTYNSLIL 1019

Query: 372  VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                A     A K+ E++L+ G  PN  T+++LI   + +G  E A   +  M+  GC P
Sbjct: 1020 YLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRP 1079

Query: 432  NS 433
            NS
Sbjct: 1080 NS 1081



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 122/300 (40%), Gaps = 39/300 (13%)

Query: 206 DVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV 265
           DV   ++   I+P+    + + +  F K      AL  ++    H  +PN Y     I+ 
Sbjct: 367 DVFDEMKQKGIIPQ-QYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINY 425

Query: 266 CGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMAD 323
            G  G+ +K+   YE ++S+ +  ++   N+++        L     V+  ++ +G+  D
Sbjct: 426 HGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPD 485

Query: 324 MASYNILLKACCLAGNTVLAQEIYGE-VKHLEAKGVLKLDVF------------------ 364
             +Y +++K C  A N   A +I+ E +++  A  VL ++                    
Sbjct: 486 NITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFY 545

Query: 365 ------------TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
                       TY+T++         +  +++ E M S    PN IT++++++     G
Sbjct: 546 ELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNG 605

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            V  A+ +   M   GC P+    N ++   V+  + D AF     W   + +  L  DY
Sbjct: 606 EVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAF-----WMFCQMKKVLAPDY 660



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/475 (18%), Positives = 191/475 (40%), Gaps = 81/475 (17%)

Query: 115 MVASGIVKSIREGRI-----------DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ 163
           M A G+V ++R   +           + VVG+L ++   GV P    +   + +    C 
Sbjct: 197 MAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRP----NVYSYTI----CI 248

Query: 164 RLL-DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC-----VNKPDVNLAIRYACIV 217
           R+L  +G +E    ++  +EE       +     I  LC      +  DV   ++ +   
Sbjct: 249 RVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQK 308

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           P   + +   + + G   D  S    ++A K    + N+      +D     G   ++  
Sbjct: 309 PDR-VTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALD 367

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++++++ + +    Y +NSL++  + A      LE++ +M   G   +  ++ + +    
Sbjct: 368 VFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHG 427

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +G ++ A + Y   + +++KG++  DV   + ++   A      MA +V  ++ + G++
Sbjct: 428 KSGESLKALKRY---ELMKSKGIVP-DVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGIS 483

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+ IT++ +I  C+ A   ++AM +F EM++  C P+    N L+    +A + + A+++
Sbjct: 484 PDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKI 543

Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           F                                                  K  + +PT 
Sbjct: 544 FYEL-----------------------------------------------KEMNLEPTD 556

Query: 516 TTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
            TYN L+     +     V  L+  M +    PN I++  ++D    +G V  AL
Sbjct: 557 CTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYAL 611



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 6/189 (3%)

Query: 270  GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASY 327
            G+   + A+++++       N  ++N L+N    A D +   E++++M + G+  D+ SY
Sbjct: 885  GNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSY 944

Query: 328  NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
             +++   C  G      +     K L   G L+ D+ TY+ ++     +   + AL +  
Sbjct: 945  TVVIDTLCADGRL---NDGLSYFKQLTDMG-LEPDLITYNLLIHGLGKSGRLEEALSLYN 1000

Query: 388  DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            DM   G+ PN  T++SLI     AG   +A  ++EE+L  G +PN    N L++    + 
Sbjct: 1001 DMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSG 1060

Query: 448  QFDRAFRLF 456
              + AF  +
Sbjct: 1061 SPENAFAAY 1069



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 107/265 (40%), Gaps = 61/265 (23%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVL--AQEIYGEVKHLEAKGVLKLDVFTYS 367
           E+ K  + LGV     SYN L+  C L    ++  A+E++ E+K L        D FTY 
Sbjct: 752 ELVKKFENLGVSLKTGSYNALI--CGLVDEDLIDIAEELFSEMKRLGCDP----DEFTYH 805

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            I+     +   +  LK++E+M + G     +T++++I+    + ++++A++L+ +++  
Sbjct: 806 LILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSE 865

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
           G  P       LL   ++                           DGN +        D 
Sbjct: 866 GFSPTPCTYGPLLDGLLK---------------------------DGNIE--------DA 890

Query: 488 QSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYNILMKA--CCTDYYRVKALMNEMRTVG 543
           +++              FD+      +P    YNIL+       D  +V  L   M   G
Sbjct: 891 EAL--------------FDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQG 936

Query: 544 LSPNHISWTILIDACGGSGNVEGAL 568
           ++P+  S+T++ID     G +   L
Sbjct: 937 MNPDIKSYTVVIDTLCADGRLNDGL 961



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 6/156 (3%)

Query: 253  SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
            +P++     +ID     G      + ++ L    +  ++  +N L++    +  L+  L 
Sbjct: 938  NPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALS 997

Query: 311  VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            +Y +M+K G+  ++ +YN L+     AG    A ++Y E   L AKG  K +VFTY+ ++
Sbjct: 998  LYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEE---LLAKG-WKPNVFTYNALI 1053

Query: 371  KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
            + ++ +   + A      M+  G  PN+ T+  L N
Sbjct: 1054 RGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQLPN 1089



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 35/227 (15%)

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           +++ + G+L  D+F  S I++ F   K    A ++ +   + GV+  T ++++LI    +
Sbjct: 720 ENIASSGLLLDDLFL-SPIIRHFCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVD 778

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
             L++ A  LF EM + GC+P+    +++L A  ++ + +   ++               
Sbjct: 779 EDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKI--------------- 823

Query: 471 DYDGNTDRISNMEHKDKQSITNTP----------NFVPNSHYSSFDKRFSFKPTTTTYNI 520
                 + + N  +K      NT           +   N +Y    + FS  PT  TY  
Sbjct: 824 -----QEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFS--PTPCTYGP 876

Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
           L+     D      +AL +EM   G  PN   + IL++    +G+ E
Sbjct: 877 LLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTE 923


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 32/286 (11%)

Query: 203 NKPDV---NLAIRYACIVPRAD--ILFCNFVREFGKK----------RDLVSALRAYDAS 247
           +KPDV   N+ I   C   R D  I F N +  +G +          R + S  R  DA 
Sbjct: 113 SKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAE 172

Query: 248 K------KHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN 299
           K      +   SP++     +I+   +C   +  RAI   E +     T N   +N L++
Sbjct: 173 KLLSDMLRKGCSPSVVTFNILINF--LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLH 230

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
               + K    +E    M   G   D+ +YN LL A C  G   +A EI   +  L +KG
Sbjct: 231 GFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEI---LNQLSSKG 287

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
              + + TY+T++   +     + A+K+ ++M   G+ P+ IT+SSL++  +  G V++A
Sbjct: 288 CSPV-LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEA 346

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           +  F ++   G  PN+   N ++    ++ Q DRA   F ++ +SK
Sbjct: 347 IKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID-FLAYMISK 391



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 113/275 (41%), Gaps = 42/275 (15%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +++   M+  G   D+ +YN+L+   C  G      E    + ++ + G  + +V T++ 
Sbjct: 102 MKLLDEMRNKGSKPDVVTYNVLINGICKEGRL---DEAIKFLNNMPSYGC-QPNVITHNI 157

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I++       W  A K+  DML  G +P+ +T++ LIN     GL+ +A+ + E+M   G
Sbjct: 158 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 217

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSW----------TLSKTQVALGED--YDGNT 476
           C PNS   N LL    +  + DRA                 T +    AL +D   D   
Sbjct: 218 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 277

Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKA 534
           + ++ +  K                           P   TYN ++          R   
Sbjct: 278 EILNQLSSK------------------------GCSPVLITYNTVIDGLSKVGKTERAIK 313

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L++EMR  GL P+ I+++ L+      G V+ A++
Sbjct: 314 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIK 348



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 13/208 (6%)

Query: 242 RAYDASKK---HLSSPNMYICRTIIDVCGICGDYMKSRAI-YEDLR-SQNVTLNIYVFNS 296
           RA D  +K   H  +PN      ++   G C +    RAI Y D+  S+    +I  +N+
Sbjct: 205 RAIDILEKMPMHGCTPNSLSYNPLLH--GFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNT 262

Query: 297 LMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           L+     D K    +E+   +   G    + +YN ++      G T  A ++  E++   
Sbjct: 263 LLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRR-- 320

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            KG LK D+ TYS++V   +       A+K   D+   G+ PN IT++S++     +   
Sbjct: 321 -KG-LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQT 378

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           ++A+     M+   C+P      IL++ 
Sbjct: 379 DRAIDFLAYMISKRCKPTEATYTILIEG 406



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 92/213 (43%), Gaps = 25/213 (11%)

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A+K+ ++M + G  P+ +T++ LIN     G +++A+     M   GC+PN    NI+L+
Sbjct: 101 AMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILR 160

Query: 442 ACVEACQFDRAFRLF-----RSWTLSKTQVALGEDY---DGNTDR-ISNMEHKDKQSIT- 491
           +     ++  A +L      +  + S     +  ++    G   R I  +E       T 
Sbjct: 161 SMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 220

Query: 492 NTPNFVPNSHYSSFDKRFSFK-------------PTTTTYNILMKACCTDYYRVKA--LM 536
           N+ ++ P  H    +K+                 P   TYN L+ A C D     A  ++
Sbjct: 221 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 280

Query: 537 NEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           N++ + G SP  I++  +ID     G  E A++
Sbjct: 281 NQLSSKGCSPVLITYNTVIDGLSKVGKTERAIK 313


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 160/408 (39%), Gaps = 79/408 (19%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
           V+  G++     A + +D       S ++  C T++      G Y ++  I+E ++   +
Sbjct: 209 VKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKETGL 268

Query: 288 TLNIYVFNSLMNVNA---HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
              +  +N +++V           LE+   M+  G+  D  +   ++ AC   G    A+
Sbjct: 269 DPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEAR 328

Query: 345 EIYGEVK-----------------------HLEAKGVLK--------LDVFTYSTIVKVF 373
             + ++K                       + EA  +LK         D  TY+ +V  +
Sbjct: 329 RFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAY 388

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
             A +      V + M S GV PN IT++++INA   AG  ++A+ +F +M + GC PN 
Sbjct: 389 VRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNV 448

Query: 434 QCCN-----------------ILLQACVEACQFDRAFRLFRSWTLSKTQVAL-GEDYDGN 475
              N                 IL    +  C  DR      +W    T +A+ GE   G 
Sbjct: 449 CTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRI-----TWN---TMLAVCGE--KGK 498

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS---------------FKPTTTTYNI 520
              +S +  + K           N+  S++ +  S               F P  TTYN 
Sbjct: 499 QKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNA 558

Query: 521 LMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
           L+ A     ++   ++++ +MR  G  PN  S+++L+     +GNV G
Sbjct: 559 LLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRG 606



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 96/201 (47%), Gaps = 6/201 (2%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL--MNVNAHDLKFTLEV 311
           P+  + RT++     C         +  L++    L++ V NS+  M V    L+   E+
Sbjct: 621 PSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEM 680

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              +   G+  ++ +YN L+      G+   A+E+   +K ++  G+   DV +Y+T++K
Sbjct: 681 LDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEM---LKDIQNSGI-SPDVVSYNTVIK 736

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F      Q A+++  +M + GV P  IT+++ ++  A  GL  +A  +   M++ GC P
Sbjct: 737 GFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGCMP 796

Query: 432 NSQCCNILLQACVEACQFDRA 452
           N     I++   ++A +   A
Sbjct: 797 NELTYKIVIDGYIKAKKHKEA 817



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 131/318 (41%), Gaps = 45/318 (14%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLG 319
           ++ + G    Y  +  +++ +  +  +L++    ++++  A   K+   +E+++ M++ G
Sbjct: 208 MVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKETG 267

Query: 320 VMADMASYNILLKACCLAGNT-VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           +   + +YN++L      G    +  E+  E++   +KG L+ D FT +T++        
Sbjct: 268 LDPTLVTYNVMLDVYGKMGRAWSMILELLDEMR---SKG-LEFDEFTCTTVISACGREGI 323

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A +  +D+   G  P T T++S++     AG+  +A+++ +EM    CEP++   N 
Sbjct: 324 LDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNE 383

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           L+ A V A   D    +                       I  M  K       T   V 
Sbjct: 384 LVAAYVRAGFHDEGAAV-----------------------IDTMASKGVMPNAITYTTVI 420

Query: 499 NSHYSSFD-----------KRFSFKPTTTTYN---ILMKACCTDYYRVKALMNEMRTVGL 544
           N++  + D           K     P   TYN   +L+         +K L  +M+  G 
Sbjct: 421 NAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILC-DMKLNGC 479

Query: 545 SPNHISWTILIDACGGSG 562
            P+ I+W  ++  CG  G
Sbjct: 480 PPDRITWNTMLAVCGEKG 497



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 122/288 (42%), Gaps = 67/288 (23%)

Query: 298 MNVNAHDLKFTLEV------YKNMQKLGVMADMASYNILLKACCL-------AGNTVLAQ 344
           M V+   ++F +++      Y    KL  +  +  Y++ +KAC          G    A 
Sbjct: 198 MKVDDQSVEFMVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAI 257

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AKWWQMALKVKEDMLSAGVTPNTITWSS 403
           EI+ ++K       L   + TY+ ++ V+    + W M L++ ++M S G+  +  T ++
Sbjct: 258 EIFEKMKETG----LDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTT 313

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           +I+AC   G++++A   F+++   G +P +   N +LQ   +A  +  A  + +      
Sbjct: 314 VISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILK------ 367

Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
                 E  D N +                                   P   TYN L+ 
Sbjct: 368 ------EMEDNNCE-----------------------------------PDAITYNELVA 386

Query: 524 ACCTDYYRVK--ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           A     +  +  A+++ M + G+ PN I++T +I+A G +G+ + AL+
Sbjct: 387 AYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALE 434



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 105/245 (42%), Gaps = 33/245 (13%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEV 311
           P+     T+I   G CG  +    +Y ++ +   T  I  +N+L+N  A   + K    V
Sbjct: 516 PDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESV 575

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNT----VLAQEIY-GEV---------------K 351
             +M+K G   +  SY++LL     AGN      +  EIY G V               K
Sbjct: 576 VLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYK 635

Query: 352 HLEAKGV-----------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             + KG+            KLD+   ++++ +F   +  + A ++ + +  +G+ PN +T
Sbjct: 636 CRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVT 695

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           ++SLI+  A  G   +A  + +++  +G  P+    N +++   +      A R+    T
Sbjct: 696 YNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMT 755

Query: 461 LSKTQ 465
            +  Q
Sbjct: 756 ANGVQ 760



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 6/147 (4%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+  + + +    +  N+  +NSL+++ A   D     E+ K++Q  G+  D+ SYN ++
Sbjct: 676 KAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVI 735

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           K  C  G   L QE    +  + A GV    + T++T +  +A    +  A +V   M+ 
Sbjct: 736 KGFCKKG---LVQEAIRILSEMTANGVQPCPI-TFNTFMSCYAGNGLFAEADEVIRYMIE 791

Query: 392 AGVTPNTITWSSLINACANAGLVEQAM 418
            G  PN +T+  +I+    A   ++AM
Sbjct: 792 HGCMPNELTYKIVIDGYIKAKKHKEAM 818


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 86/151 (56%), Gaps = 7/151 (4%)

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           L+  N T +I +   L N+N   ++  ++ + + ++ G++ D+ +Y++++  CC A  T 
Sbjct: 571 LKPDNYTYSILIC-GLFNMNK--VEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTE 627

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
             QE + E   + +K V + +   Y+ +++ +  +    MAL+++EDM   G++PN+ T+
Sbjct: 628 EGQEFFDE---MMSKNV-QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATY 683

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +SLI   +    VE+A  LFEEM   G EPN
Sbjct: 684 TSLIKGMSIISRVEEAKLLFEEMRMEGLEPN 714



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 130/318 (40%), Gaps = 59/318 (18%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           SP   +  T+I   G+C  G + K+  ++    ++   ++    N+L++    A  L   
Sbjct: 467 SPGGGLLTTLIS--GLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEA 524

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
             + K +   G + D  SYN L+  CC  G   L  E +  +  +  +G LK D +TYS 
Sbjct: 525 FRIQKEILGRGCVMDRVSYNTLISGCC--GKKKL-DEAFMFLDEMVKRG-LKPDNYTYSI 580

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++    +    + A++  +D    G+ P+  T+S +I+ C  A   E+    F+EM+   
Sbjct: 581 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKN 640

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            +PN+   N L++A      + R+ RL  +  L +                 +M+HK   
Sbjct: 641 VQPNTVVYNHLIRA------YCRSGRLSMALELRE-----------------DMKHK--- 674

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSP 546
                                   P + TY  L+K  +  +     K L  EMR  GL P
Sbjct: 675 ---------------------GISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 713

Query: 547 NHISWTILIDACGGSGNV 564
           N   +T LID  G  G +
Sbjct: 714 NVFHYTALIDGYGKLGQM 731



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 102/199 (51%), Gaps = 12/199 (6%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A++ +D  K++   P++Y    +ID C       + +  ++++ S+NV  N  V+N L+ 
Sbjct: 594 AIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 653

Query: 300 V--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
               +  L   LE+ ++M+  G+  + A+Y  L+K   +      A+ ++ E++ +E   
Sbjct: 654 AYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR-MEG-- 710

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVK---EDMLSAGVTPNTITWSSLINACANAGLV 414
            L+ +VF Y+ ++  +   K  QM +KV+    +M S  V PN IT++ +I   A  G V
Sbjct: 711 -LEPNVFHYTALIDGY--GKLGQM-VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNV 766

Query: 415 EQAMHLFEEMLQAGCEPNS 433
            +A  L  EM + G  P+S
Sbjct: 767 TEASRLLNEMREKGIVPDS 785



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 153/384 (39%), Gaps = 52/384 (13%)

Query: 221 DILFCNFVR--EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           +IL  + VR  EF K         A+D   K +S P++Y+  T I+     G   ++  +
Sbjct: 230 NILLTSLVRANEFQK------CCEAFDVVCKGVS-PDVYLFTTAINAFCKGGKVEEAVKL 282

Query: 279 YEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           +  +    V  N+  FN++++       +D  F  +  + M + G+   + +Y+IL+K  
Sbjct: 283 FSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFK--EKMVERGMEPTLITYSILVKGL 340

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
             A       + Y  +K +  KG    +V  Y+ ++  F +A     A+++K+ M+S G+
Sbjct: 341 TRAKRI---GDAYFVLKEMTKKG-FPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGL 396

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           +  + T+++LI      G  + A  L +EML  G   N      ++        FD A R
Sbjct: 397 SLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALR 456

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI----------------TNTPNFVP 498
                 L       G      T  IS +    K S                 T T N + 
Sbjct: 457 FVGEMLLRNMSPGGGL----LTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL 512

Query: 499 NS--HYSSFDKRFSFKPTT---------TTYNILMKACCTDYYRVKALM--NEMRTVGLS 545
           +        D+ F  +             +YN L+  CC      +A M  +EM   GL 
Sbjct: 513 HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLK 572

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
           P++ +++ILI        VE A+Q
Sbjct: 573 PDNYTYSILICGLFNMNKVEEAIQ 596



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 37/260 (14%)

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             L+V+  +   G+     + NILL +   A       E +  V     KGV   DV+ +
Sbjct: 209 LALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV----CKGV-SPDVYLF 263

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T +  F      + A+K+   M  AGV PN +T++++I+     G  ++A    E+M++
Sbjct: 264 TTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE 323

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G EP     +IL++    A +   A+ + +  T         + +  N    +N+    
Sbjct: 324 RGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMT--------KKGFPPNVIVYNNL---- 371

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKP---------TTTTYNILMKACCTDYYRVKA--L 535
                   +F+      S +K    K          T++TYN L+K  C +     A  L
Sbjct: 372 ------IDSFI---EAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERL 422

Query: 536 MNEMRTVGLSPNHISWTILI 555
           + EM ++G + N  S+T +I
Sbjct: 423 LKEMLSIGFNVNQGSFTSVI 442


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 107/269 (39%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+ + + G  A +  +NIL+   C  G+  +AQ ++  +     K  L+  V 
Sbjct: 123 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI----TKWGLRPSVV 178

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  ML++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 179 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEM 238

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  ++                            
Sbjct: 239 LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY---------------------------- 270

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  +   L++EM   
Sbjct: 271 --KQMLSQ-----------------SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMK 311

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+  ++T LID C   G+++ A + R
Sbjct: 312 GLKPDKFTYTTLIDGCCKEGDLDTAFEHR 340



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 127/294 (43%), Gaps = 24/294 (8%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++++++ +    +  ++  +N+LMN  +   DL     +   M   GV  D+ +Y
Sbjct: 156 GDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 215

Query: 328 NILLKACCLAGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           ++L+   C       A E++ E  VK L   GV      T++T++          +A+++
Sbjct: 216 SVLINGLCKESKMDGANELFDEMLVKGLVPNGV------TFTTLIDGHCKNGRVDLAMEI 269

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + MLS  + P+ IT+++LI      G ++QA  L +EM   G +P+      L+  C +
Sbjct: 270 YKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCK 329

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
               D AF   +       ++    D    T  IS +  + +         V        
Sbjct: 330 EGDLDTAFEHRKRMIQENIRL----DDVAYTALISGLCQEGRS--------VDAEKMLRE 377

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
                 KP T TY +++   C   D ++   L+ EM   G +P+ +++ +L++ 
Sbjct: 378 MLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 150/359 (41%), Gaps = 37/359 (10%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DI +F   +  + +   L  A+  Y  +++H        CR +++       +     
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YE++       ++Y FN LM+      D++    V+  + K G+   + SYN L+    
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV + DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 189 RLGD---LDEGFRLKSAMLASGV-QPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLV 244

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++LI+     G V+ AM ++++ML     P+    N L+    +     +A  L
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 304

Query: 456 FRSWTL--------SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
               ++        + T +  G   +G+ D  +  EH+ +    N               
Sbjct: 305 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLD--TAFEHRKRMIQEN--------------- 347

Query: 508 RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
               +     Y  L+   C +   V A  ++ EM +VGL P+  ++T++I+     G+V
Sbjct: 348 ---IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDV 403



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 128/313 (40%), Gaps = 20/313 (6%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           C  P +   F   +  F K  D+  A   +DA  K    P++    T+++     GD  +
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
              +   + +  V  ++Y ++ L+N    + K     E++  M   G++ +  ++  L+ 
Sbjct: 196 GFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLID 255

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G   LA EIY   K + ++ +L  D+ TY+T++         + A  + ++M   
Sbjct: 256 GHCKNGRVDLAMEIY---KQMLSQSLLP-DLITYNTLIYGLCKKGDLKQAHDLIDEMSMK 311

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDR 451
           G+ P+  T+++LI+ C   G ++ A    + M+Q     +      L+   C E    D 
Sbjct: 312 GLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD- 370

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           A ++ R        +++G   D  T  +   E   K  +      +   H      R   
Sbjct: 371 AEKMLRE------MLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMH------RDGH 418

Query: 512 KPTTTTYNILMKA 524
            P+  TYN+LM  
Sbjct: 419 APSVVTYNVLMNG 431


>gi|255661148|gb|ACU25743.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 425

 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  VT N   +++L+ +   + KF   L ++  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 275

Query: 455 LFR 457
           LF+
Sbjct: 276 LFQ 278



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGVTPNT ++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRA 273



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 106/231 (45%), Gaps = 6/231 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  FGK+    +AL      ++     ++ +   +I++     DY K+ +I+  L+
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
               T ++  +N+++NV   A   +    +   M+  GV  + ASY+ LL         +
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  I+ E++ ++      LD+ T + ++ V+      + A K+   M   G+ PN +++
Sbjct: 132 EALSIFAEMREIKC----LLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           ++L+    +A L  +A+HLF  M +   E N    N ++    +  + ++A
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  +  ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++   
Sbjct: 212 RKNIEQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKV 267

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S+GV  + + + ++I A   AGLV  A  L  E+ +    P++   
Sbjct: 268 GKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPR 323

Query: 437 NILLQACVEACQFDRAFRLFRS 458
           +I +     A + + A  +FR 
Sbjct: 324 DIAIHILAGAGRIEEATWVFRQ 345


>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1147

 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 125/301 (41%), Gaps = 60/301 (19%)

Query: 208 NLAIRYACIVPRAD--------------ILFCNFVREFGKKRDLVSALRAYDASKKHLSS 253
           N+ IR  C   R D              + +   +  + K R  V A   +D  K    +
Sbjct: 383 NIYIRALCEFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNIN 442

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P++    T+ID  G+C  G+   ++ + E++ SQ +  ++  + +L+   V   +L    
Sbjct: 443 PSIVTYNTLID--GLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMAT 500

Query: 310 EVYKNMQKLGV------------------------------------MADMASYNILLKA 333
           E+Y  M + G+                                      D+  YN+ +  
Sbjct: 501 EIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDG 560

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C  GN   A E   ++  +   G++  D  TY+T+++ + +   ++MA  + ++MLS  
Sbjct: 561 LCKVGNLEKAIEFQRKIFRV---GLVP-DHVTYTTVIRGYLEKGRFKMARDLYDEMLSKR 616

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           ++P+ IT+  LI+  A AG +EQA     EM + G  PN    N LL    +A   D A+
Sbjct: 617 LSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAY 676

Query: 454 R 454
           R
Sbjct: 677 R 677



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 136/316 (43%), Gaps = 29/316 (9%)

Query: 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM 315
           +Y  +++ + C +  + M  +     +R+ N+ L +   + +MN          EVY+ M
Sbjct: 213 VYTKKSMAEKCLLSFEKMIRKGFLPSVRNCNIVLRVLRDSRMMNK-------AQEVYETM 265

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
              G+M  + ++N +L +C  AG+     +I+ E+K    +  ++    TY+ ++  F+ 
Sbjct: 266 VMHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMK----RRNIEFSEVTYNILINGFSK 321

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
           +   + A +   DM  +G      +++ LI      GL ++A  + +EML AG  P +  
Sbjct: 322 SGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTST 381

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
            NI ++A  E  + D A  L  S       +A  +    NT     + H           
Sbjct: 382 YNIYIRALCEFGRIDDARELLSS-------MAAPDVVSYNT-----LMH----GYIKMRK 425

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTI 553
           FV  S      K  +  P+  TYN L+   C   +    + L  EM +  + P+ I++T 
Sbjct: 426 FVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTT 485

Query: 554 LIDACGGSGNVEGALQ 569
           L+     +GN+  A +
Sbjct: 486 LLKGFVKNGNLSMATE 501



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/412 (19%), Positives = 154/412 (37%), Gaps = 78/412 (18%)

Query: 225 CNFV-REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           CN V R     R +  A   Y+    H   P +    T++D C   GD  +   I+ +++
Sbjct: 242 CNIVLRVLRDSRMMNKAQEVYETMVMHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMK 301

Query: 284 SQNVTLNIYVFNSLMN------------------------VNAHDLKFTLEVY------- 312
            +N+  +   +N L+N                        V  +     +E Y       
Sbjct: 302 RRNIEFSEVTYNILINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFD 361

Query: 313 ------KNMQKLGVMADMASYNILLKACCLAGNTVLAQEI-----------YGEVKH--- 352
                   M   G+    ++YNI ++A C  G    A+E+           Y  + H   
Sbjct: 362 EAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSMAAPDVVSYNTLMHGYI 421

Query: 353 -----LEAK--------GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
                +EA         G +   + TY+T++    ++   + A ++KE+M S  + P+ I
Sbjct: 422 KMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVI 481

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+++L+      G +  A  +++EML+ G +P+           +     ++AFRL    
Sbjct: 482 TYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLH--- 538

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                +  + ED+      I N+       +    N      +     R    P   TY 
Sbjct: 539 -----EEMVAEDHHAPDLTIYNVR---IDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYT 590

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            +++       +   + L +EM +  LSP+ I++ +LI     +G +E A Q
Sbjct: 591 TVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQ 642



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 109/241 (45%), Gaps = 11/241 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIY 279
           I +   ++ F K  +L  A   YD   +    P+   Y  RT+ ++    GD  K+  ++
Sbjct: 481 ITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELR--LGDSEKAFRLH 538

Query: 280 EDLRSQN---VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           E++ +++     L IY           +L+  +E  + + ++G++ D  +Y  +++    
Sbjct: 539 EEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLE 598

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
            G   +A+++Y E+        L   V TY  ++   A A   + A +   +M   GV P
Sbjct: 599 KGRFKMARDLYDEM----LSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRP 654

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N +T ++L++    AG +++A     +M + G  PN     IL+    +  +++   +L+
Sbjct: 655 NVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISKHCDLDKWEEVVKLY 714

Query: 457 R 457
           +
Sbjct: 715 K 715



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++  C  ++ V        K++ +YE +    +   +  FN++++    A DL+   ++
Sbjct: 237 PSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMPTVITFNTMLDSCFKAGDLERVDKI 296

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M++  +     +YNIL+     +G    A+  +G+++    +    +  ++++ +++
Sbjct: 297 WLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFHGDMQ----RSGFPVTPYSFNPLIE 352

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +     +  A  V ++ML+AG+ P T T++  I A    G ++ A     E+L +   P
Sbjct: 353 GYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDA----RELLSSMAAP 408

Query: 432 NSQCCNILLQACVEACQFDRAFRLF 456
           +    N L+   ++  +F  A  LF
Sbjct: 409 DVVSYNTLMHGYIKMRKFVEASLLF 433



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 70/138 (50%), Gaps = 6/138 (4%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G +  +R +Y+++ S+ ++ ++  +  L++    A  L+   +    M+K GV  ++ ++
Sbjct: 600 GRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTH 659

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N LL   C AGN     E Y  +  +E +G+   + ++Y+ ++    D   W+  +K+ +
Sbjct: 660 NALLHGMCKAGNI---DEAYRYLCKMEEEGI-SPNKYSYTILISKHCDLDKWEEVVKLYK 715

Query: 388 DMLSAGVTPNTITWSSLI 405
           +ML   + P+  T  +L 
Sbjct: 716 EMLDKEIEPDGYTHRALF 733


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 86/151 (56%), Gaps = 7/151 (4%)

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           L+  N T +I +   L N+N   ++  ++ + + ++ G++ D+ +Y++++  CC A  T 
Sbjct: 560 LKPDNYTYSILIC-GLFNMNK--VEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTE 616

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
             QE + E   + +K V + +   Y+ +++ +  +    MAL+++EDM   G++PN+ T+
Sbjct: 617 EGQEFFDE---MMSKNV-QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATY 672

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +SLI   +    VE+A  LFEEM   G EPN
Sbjct: 673 TSLIKGMSIISRVEEAKLLFEEMRMEGLEPN 703



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 134/332 (40%), Gaps = 59/332 (17%)

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNS 296
           SALR          SP   +  T+I   G+C  G + K+  ++    ++   ++    N+
Sbjct: 442 SALRFVGEMLLRNMSPGGGLLTTLIS--GLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 499

Query: 297 LMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           L++    A  L     + K +   G + D  SYN L+  CC  G   L  E +  +  + 
Sbjct: 500 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCC--GKKKL-DEAFMFLDEMV 556

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            +G LK D +TYS ++    +    + A++  +D    G+ P+  T+S +I+ C  A   
Sbjct: 557 KRG-LKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERT 615

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG 474
           E+    F+EM+    +PN+   N L++A      + R+ RL  +  L +           
Sbjct: 616 EEGQEFFDEMMSKNVQPNTVVYNHLIRA------YCRSGRLSMALELRE----------- 658

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRV 532
                 +M+HK                           P + TY  L+K  +  +     
Sbjct: 659 ------DMKHK------------------------GISPNSATYTSLIKGMSIISRVEEA 688

Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           K L  EMR  GL PN   +T LID  G  G +
Sbjct: 689 KLLFEEMRMEGLEPNVFHYTALIDGYGKLGQM 720



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 102/199 (51%), Gaps = 12/199 (6%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           A++ +D  K++   P++Y    +ID C       + +  ++++ S+NV  N  V+N L+ 
Sbjct: 583 AIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 642

Query: 300 V--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
               +  L   LE+ ++M+  G+  + A+Y  L+K   +      A+ ++ E++ +E   
Sbjct: 643 AYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR-MEG-- 699

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVK---EDMLSAGVTPNTITWSSLINACANAGLV 414
            L+ +VF Y+ ++  +   K  QM +KV+    +M S  V PN IT++ +I   A  G V
Sbjct: 700 -LEPNVFHYTALIDGY--GKLGQM-VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNV 755

Query: 415 EQAMHLFEEMLQAGCEPNS 433
            +A  L  EM + G  P+S
Sbjct: 756 TEASRLLNEMREKGIVPDS 774



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 153/384 (39%), Gaps = 52/384 (13%)

Query: 221 DILFCNFVR--EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           +IL  + VR  EF K         A+D   K +S P++Y+  T I+     G   ++  +
Sbjct: 219 NILLTSLVRANEFQK------CCEAFDVVCKGVS-PDVYLFTTAINAFCKGGKVEEAVKL 271

Query: 279 YEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           +  +    V  N+  FN++++       +D  F  +  + M + G+   + +Y+IL+K  
Sbjct: 272 FSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFK--EKMVERGMEPTLITYSILVKGL 329

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
             A       + Y  +K +  KG    +V  Y+ ++  F +A     A+++K+ M+S G+
Sbjct: 330 TRAKRI---GDAYFVLKEMTKKG-FPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGL 385

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           +  + T+++LI      G  + A  L +EML  G   N      ++        FD A R
Sbjct: 386 SLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALR 445

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI----------------TNTPNFVP 498
                 L       G      T  IS +    K S                 T T N + 
Sbjct: 446 FVGEMLLRNMSPGGGL----LTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL 501

Query: 499 NS--HYSSFDKRFSFKPTT---------TTYNILMKACCTDYYRVKALM--NEMRTVGLS 545
           +        D+ F  +             +YN L+  CC      +A M  +EM   GL 
Sbjct: 502 HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLK 561

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
           P++ +++ILI        VE A+Q
Sbjct: 562 PDNYTYSILICGLFNMNKVEEAIQ 585



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 37/260 (14%)

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             L+V+  +   G+     + NILL +   A       E +  V     KGV   DV+ +
Sbjct: 198 LALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV----CKGV-SPDVYLF 252

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T +  F      + A+K+   M  AGV PN +T++++I+     G  ++A    E+M++
Sbjct: 253 TTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE 312

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G EP     +IL++    A +   A+ + +  T         + +  N    +N+    
Sbjct: 313 RGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMT--------KKGFPPNVIVYNNL---- 360

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKP---------TTTTYNILMKACCTDYYRVKA--L 535
                   +F+      S +K    K          T++TYN L+K  C +     A  L
Sbjct: 361 ------IDSFI---EAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERL 411

Query: 536 MNEMRTVGLSPNHISWTILI 555
           + EM ++G + N  S+T +I
Sbjct: 412 LKEMLSIGFNVNQGSFTSVI 431


>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 112/257 (43%), Gaps = 22/257 (8%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E++  M++LG   D  +Y+++L A    G ++  +++    + +  KG  K    TY+TI
Sbjct: 90  ELFSEMKRLGCDPDEFTYHLILDA---MGKSMRIEDMLKIQEEMHNKGY-KSTYVTYNTI 145

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +     +K    A+ +   ++S G +P   T+  L++     G +E A  LF+EML+ GC
Sbjct: 146 ISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGC 205

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
           EPN    NILL     A   ++   LF S      +  +  D    T  I  +    +  
Sbjct: 206 EPNCAIYNILLNGYRIAGDTEKVCELFESMV----EQGMNPDIKSYTVVIDTLCADGRL- 260

Query: 490 ITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLS 545
                    N   S F +      +P   TYN+L+          +AL   N+M   G++
Sbjct: 261 ---------NDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIA 311

Query: 546 PNHISWTILIDACGGSG 562
           PN  ++  LI   G +G
Sbjct: 312 PNLYTYNSLILYLGKAG 328



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 90/182 (49%), Gaps = 6/182 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEV 311
           PN  I   +++   I GD  K   ++E +  Q +  +I  +  +++    D  L   L  
Sbjct: 207 PNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSY 266

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +K +  +G+  D+ +YN+L+     +G    A  +Y +   +E KG+   +++TY++++ 
Sbjct: 267 FKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYND---MEKKGIAP-NLYTYNSLIL 322

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
               A     A K+ E++L+ G  PN  T+++LI   + +G  E A   +  M+  GC P
Sbjct: 323 YLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRP 382

Query: 432 NS 433
           NS
Sbjct: 383 NS 384



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 92/191 (48%), Gaps = 10/191 (5%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASY 327
           G+   + A+++++       N  ++N L+N    A D +   E++++M + G+  D+ SY
Sbjct: 188 GNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSY 247

Query: 328 NILLKACCLAG--NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
            +++   C  G  N  L+       K L   G L+ D+ TY+ ++     +   + AL +
Sbjct: 248 TVVIDTLCADGRLNDGLSY-----FKQLTDMG-LEPDLITYNLLIHGLGKSGRLEEALSL 301

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             DM   G+ PN  T++SLI     AG   +A  ++EE+L  G +PN    N L++    
Sbjct: 302 YNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSV 361

Query: 446 ACQFDRAFRLF 456
           +   + AF  +
Sbjct: 362 SGSPENAFAAY 372



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 107/265 (40%), Gaps = 61/265 (23%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVL--AQEIYGEVKHLEAKGVLKLDVFTYS 367
           E+ K  + LGV     SYN L+  C L    ++  A+E++ E+K L        D FTY 
Sbjct: 55  ELVKKFENLGVSLKTGSYNALI--CGLVDEDLIDIAEELFSEMKRLGCDP----DEFTYH 108

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            I+     +   +  LK++E+M + G     +T++++I+    + ++++A++L+ +++  
Sbjct: 109 LILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSE 168

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
           G  P       LL   ++                           DGN +        D 
Sbjct: 169 GFSPTPCTYGPLLDGLLK---------------------------DGNIE--------DA 193

Query: 488 QSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYNILMKA--CCTDYYRVKALMNEMRTVG 543
           +++              FD+      +P    YNIL+       D  +V  L   M   G
Sbjct: 194 EAL--------------FDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQG 239

Query: 544 LSPNHISWTILIDACGGSGNVEGAL 568
           ++P+  S+T++ID     G +   L
Sbjct: 240 MNPDIKSYTVVIDTLCADGRLNDGL 264



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 6/156 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +P++     +ID     G      + ++ L    +  ++  +N L++    +  L+  L 
Sbjct: 241 NPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALS 300

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +Y +M+K G+  ++ +YN L+     AG    A ++Y E   L AKG  K +VFTY+ ++
Sbjct: 301 LYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEE---LLAKG-WKPNVFTYNALI 356

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
           + ++ +   + A      M+  G  PN+ T+  L N
Sbjct: 357 RGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQLPN 392


>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
          Length = 933

 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 143/340 (42%), Gaps = 39/340 (11%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           N +I  ++++     G   ++ A+++D     ++L+   + +L++    A D+    +  
Sbjct: 483 NKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFG 542

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + +    ++ D   YN+ +   C+ G    A+ I  E++++     LK D  TY+T++  
Sbjct: 543 QELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMG----LKPDQSTYNTMIVS 598

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
                    ALK+  +M  + + PN IT+++L+      G VE+A +L  EM+ AG  P+
Sbjct: 599 HCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPS 658

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED------------YDGNTDRIS 480
           S     +LQAC ++ + D    +   W ++     L  D            Y G T + +
Sbjct: 659 SLTHRRVLQACSQSRRLDVILDI-HEWMMN---AGLHADITVYNTLLQVLCYHGMTRKAT 714

Query: 481 NMEHK------DKQSITNTPNFVPNSHYSSFDKRFS---------FKPTTTTYNILMKA- 524
            +  +         +IT     + +   S  D  F+           P   T+N L+   
Sbjct: 715 VVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGL 774

Query: 525 -CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
                      ++ EM   GL PN++++ IL+   G   N
Sbjct: 775 ESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSN 814



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 149/351 (42%), Gaps = 51/351 (14%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-----VNAHDLKFT 308
           PN     T+ID     G   +  ++  ++ S+ V +++  + +LM+         ++K T
Sbjct: 307 PNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDT 366

Query: 309 LE--VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
           L   +  N+   GV     +Y +L+ A C A N   A+++  E   +E K +   +V T+
Sbjct: 367 LRFALSDNLSLNGV-----TYTVLIDALCKAHNVDEAEQVLLE---MEEKSI-SPNVVTF 417

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           S+++  F        A + K  M   G+ PN +T+ +LI+        + A+ ++ +ML 
Sbjct: 418 SSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLC 477

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM---- 482
            G E N    + L+    +  + + A  LF+  + S     L  D+   T  I  +    
Sbjct: 478 EGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGS----GLSLDHVNYTTLIDGLFKAG 533

Query: 483 ----EHKDKQSITNTPNFVPNS-HYSSFD-------------------KRFSFKPTTTTY 518
                 K  Q + +  N +P++  Y+ F                    +    KP  +TY
Sbjct: 534 DMPTAFKFGQELMDR-NMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTY 592

Query: 519 NILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           N ++ + C      KA  L++EM+   + PN I++  L+    G+G VE A
Sbjct: 593 NTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKA 643



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 87/401 (21%), Positives = 159/401 (39%), Gaps = 79/401 (19%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
             N +R+ GK  + ++  +  DAS   LS  ++    T+ID     GD   +    ++L 
Sbjct: 490 LVNGLRQNGKIEEAMALFK--DASGSGLSLDHVNYT-TLIDGLFKAGDMPTAFKFGQELM 546

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            +N+  +  V+N  +N      KF     +   M+ +G+  D ++YN ++ + C  G T 
Sbjct: 547 DRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETA 606

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A ++  E+K       +K ++ TY+T+V         + A  +  +M+SAG +P+++T 
Sbjct: 607 KALKLLHEMK----MSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTH 662

Query: 402 SSLINACA----------------NAGL-------------------VEQAMHLFEEMLQ 426
             ++ AC+                NAGL                     +A  + EEML 
Sbjct: 663 RRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLG 722

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-------------TLSKTQVALGEDYD 473
           +G  P++   N L+    ++   D AF  +                TL     ++G   +
Sbjct: 723 SGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGE 782

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK----RF-------SFKPTTTTYNILM 522
             T  I  ME    +    T + +   H    +K    R         F P  +TYN L+
Sbjct: 783 AGTVLI-EMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALI 841

Query: 523 KACCTDYYR------VKALMNEMRTVGLSPNHISWTILIDA 557
               +D+ +       K L  +M+  G+ P   ++ IL+  
Sbjct: 842 ----SDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSG 878



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 135/326 (41%), Gaps = 42/326 (12%)

Query: 270 GDYMKSRAIYEDLR---SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADM 324
           G   K+  + + LR   S N++LN   +  L++    AH++    +V   M++  +  ++
Sbjct: 355 GKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNV 414

Query: 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            +++ ++      G    A E     + ++ +G+   +V TY T++  F   +    AL+
Sbjct: 415 VTFSSVINGFVKRGLLDKATEYK---RMMKERGI-NPNVVTYGTLIDGFFKFQGQDAALE 470

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           V  DML  GV  N     SL+N     G +E+AM LF++   +G   +      L+    
Sbjct: 471 VYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLF 530

Query: 445 EACQFDRAFRLFRSWTLSKTQVA--------------LGEDYDGNT--DRISNMEHKDKQ 488
           +A     AF+ F    + +  +               LG+  +  +    + NM  K  Q
Sbjct: 531 KAGDMPTAFK-FGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQ 589

Query: 489 SITNTPNFVPNSHYSSFD-----------KRFSFKPTTTTYNILMKAC--CTDYYRVKAL 535
           S  NT   +  SH    +           K  S KP   TYN L+          + K L
Sbjct: 590 STYNT---MIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYL 646

Query: 536 MNEMRTVGLSPNHISWTILIDACGGS 561
           +NEM + G SP+ ++   ++ AC  S
Sbjct: 647 LNEMVSAGFSPSSLTHRRVLQACSQS 672



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 129/319 (40%), Gaps = 20/319 (6%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           +K +   AL+     K     PN+    T++      G   K++ +  ++ S   + +  
Sbjct: 601 RKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSL 660

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
               ++     +  L   L++++ M   G+ AD+  YN LL+  C  G T  A  +   +
Sbjct: 661 THRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVV---L 717

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + +   G+   D  T++ ++     +     A      ML   ++PN  T+++L+    +
Sbjct: 718 EEMLGSGIAP-DTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLES 776

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G + +A  +  EM ++G EPN+   +IL+    +      A RL+    + K  V    
Sbjct: 777 VGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLY-CEMVGKGFVPKVS 835

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTD 528
            Y+     IS+       +            +    KR    PT+ TY+IL+       +
Sbjct: 836 TYNA---LISDFTKAGMMTQA-------KELFKDMQKR-GVHPTSCTYDILVSGWSRIRN 884

Query: 529 YYRVKALMNEMRTVGLSPN 547
              VK  + +M+  G SP+
Sbjct: 885 GTEVKKCLKDMKEKGFSPS 903



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+  +N L+   C  G+T  A  +      + A+G L +DV  Y+T+V  F  A     A
Sbjct: 168 DVIGWNTLIAGYCRVGDTPAALSV---ADRMTAQG-LPMDVVGYNTLVAGFCRAGQVDAA 223

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
             V + M  AGV PN  T++  I        VE+A  L+E M++ G   +    + L+  
Sbjct: 224 RGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAG 283

Query: 443 CVEACQFDRAFRLFR 457
                +F  A+ LFR
Sbjct: 284 LCRDGRFSEAYALFR 298



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 18/256 (7%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           D    L V   M   G+  D+  YN L+   C AG    A+   G +  ++  GV   +V
Sbjct: 184 DTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAAR---GVLDMMKEAGV-DPNV 239

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY+  +  +   K  + A  + E M+  GV  + +T S+L+      G   +A  LF E
Sbjct: 240 ATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFRE 299

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           M + G  PN      L+ +  +A +      L     +S+  V     Y    D +    
Sbjct: 300 MDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEM-VSRGVVMDLVTYTALMDWLGKQG 358

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRT 541
             D+  + +T  F  + + S             TY +L+ A C  +     + ++ EM  
Sbjct: 359 KTDE--VKDTLRFALSDNLSL---------NGVTYTVLIDALCKAHNVDEAEQVLLEMEE 407

Query: 542 VGLSPNHISWTILIDA 557
             +SPN ++++ +I+ 
Sbjct: 408 KSISPNVVTFSSVING 423



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 6/184 (3%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A Y  +  QN++ NI  FN+L+    +   +     V   M+K G+  +  +Y+IL+   
Sbjct: 750 ATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGH 809

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
               N V A  +Y E   +  KG +   V TY+ ++  F  A     A ++ +DM   GV
Sbjct: 810 GKQSNKVEAMRLYCE---MVGKGFVP-KVSTYNALISDFTKAGMMTQAKELFKDMQKRGV 865

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P + T+  L++  +      +     ++M + G  P+    + + +A  +     +A R
Sbjct: 866 HPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQR 925

Query: 455 LFRS 458
           L ++
Sbjct: 926 LLKN 929



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V   M K GV  D  + N LL   C  G    A  +          G+  LDV  ++T++
Sbjct: 122 VLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADR-----GGGIHALDVIGWNTLI 176

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +        AL V + M + G+  + + +++L+     AG V+ A  + + M +AG +
Sbjct: 177 AGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVD 236

Query: 431 PN 432
           PN
Sbjct: 237 PN 238


>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
          Length = 738

 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 7/227 (3%)

Query: 219 RADILFCNFVRE-FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R DI+  N + E +GKKR L  A   Y A  +    P       ++      G   ++  
Sbjct: 315 RPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEG 374

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +  ++R   +  N  V+N+ ++  + A   +  +EVY+ M++    A+  ++ +++    
Sbjct: 375 VISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYG 434

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            A   + + +++ E+K +  K     ++ TY+ +V  FA     + A +V E+M  AG  
Sbjct: 435 KAKQPMSSMKVFNEMKSIGCKP----NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHE 490

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           P+   +++L+ A + AGL + A  +F  M   GCEP+    NIL+ A
Sbjct: 491 PDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDA 537



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 111/244 (45%), Gaps = 8/244 (3%)

Query: 202 VNKPD-VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICR 260
           +NK + + +A+  A  VP  D  +   +R +     L  A       ++H   PN  +  
Sbjct: 334 LNKAESIYMALLEAQCVPTEDT-YALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYN 392

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
             +D         K+  +Y+ ++ +    N   F  ++NV   A     +++V+  M+ +
Sbjct: 393 AYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSI 452

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   ++ +Y  L+ A    G    A+E++ E++    +     DV+ Y+ +++ ++ A  
Sbjct: 453 GCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP----DVYAYNALMEAYSRAGL 508

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            Q A ++   M   G  P+  +++ L++A   AGL E A  +FEE+ Q G  P  +   +
Sbjct: 509 PQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHML 568

Query: 439 LLQA 442
           LL A
Sbjct: 569 LLAA 572



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 7/199 (3%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLG 319
           ++D  G  G +  + A++E+L+ + ++  +     L+  +A     T   EV   + K G
Sbjct: 534 LVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSG 593

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           +  D  + N +L A   AG     + +   +  +E +G    DV TY+  V  +  A + 
Sbjct: 594 LTPDTFALNAMLNAYARAGRLDDMERL---LAAMERRG--DADVGTYNVAVNAYGRAGYV 648

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
                    + + G+  + +TW++ + A A      + + + EEM+ AGC P++    +L
Sbjct: 649 GRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVL 708

Query: 440 LQACVEACQFDRAFRLFRS 458
           L AC +  Q ++   + RS
Sbjct: 709 LAACSDERQVEQVTAIVRS 727



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 20/214 (9%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
            + D+  Y+ +++ +   +    A  +   +L A   P   T++ L+ A  NAG + +A 
Sbjct: 314 FRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAE 373

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478
            +  EM + G  PN+   N  L   ++A   ++A  +++     + +         NT+ 
Sbjct: 374 GVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCR--------ANTET 425

Query: 479 IS---NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA- 534
            +   N+  K KQ +++   F       +  K    KP   TY  L+ A   +    KA 
Sbjct: 426 FTLMINVYGKAKQPMSSMKVF-------NEMKSIGCKPNICTYTALVNAFAREGLCEKAE 478

Query: 535 -LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            +  EM+  G  P+  ++  L++A   +G  +GA
Sbjct: 479 EVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGA 512



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 104/266 (39%), Gaps = 22/266 (8%)

Query: 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA 220
           E Q+     +V  +  LME      LP +   E F ++Q    +PD            RA
Sbjct: 483 EMQQAGHEPDVYAYNALMEAYSRAGLP-QGASEIFSLMQHMGCEPD------------RA 529

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
              +   V  +G+      A   ++  K+   SP M     ++      G+  +   +  
Sbjct: 530 S--YNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMA 587

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            L    +T + +  N+++N    A  L     +   M++ G  AD+ +YN+ + A   AG
Sbjct: 588 QLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMERRGD-ADVGTYNVAVNAYGRAG 646

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
                +          A   L  DV T++  +  +A  K +   + + E+M+ AG  P+ 
Sbjct: 647 YVGRMEA----AFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDA 702

Query: 399 ITWSSLINACANAGLVEQAMHLFEEM 424
            T   L+ AC++   VEQ   +   M
Sbjct: 703 GTARVLLAACSDERQVEQVTAIVRSM 728


>gi|356522073|ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 685

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 114/248 (45%), Gaps = 6/248 (2%)

Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           R  IL+   ++ F K +DL +  + +D   +    P+     TII    IC    K+   
Sbjct: 160 REVILYNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVTFSTIISCARICSLPNKAVEW 219

Query: 279 YEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           +E + S     +   ++++++    A ++   L +Y   +      D  +++ L+K   L
Sbjct: 220 FEKMSSFGCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGL 279

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           AGN      +Y E+K L   GV K ++  Y+T++     AK    A  +  +M + G +P
Sbjct: 280 AGNYDGCLNVYQEMKVL---GV-KPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSP 335

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N +T++SL+ A       E A+ +++EM + G E N+   N LL  C +    + AF +F
Sbjct: 336 NWVTYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIF 395

Query: 457 RSWTLSKT 464
                S T
Sbjct: 396 EDMKTSAT 403



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 5/227 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   ++ +G   +    L  Y   K     PNM I  T++D  G      ++++IY +
Sbjct: 268 VTFSTLIKMYGLAGNYDGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTE 327

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDL--KFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + +   + N   + SL+         +  L VYK M++ G+  +   YN LL  C   G 
Sbjct: 328 MTNNGFSPNWVTYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLG- 386

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             LA E +   + ++       D +T+S+++ +++       A ++  +M+ +G  P   
Sbjct: 387 --LANEAFEIFEDMKTSATCLCDSWTFSSLITIYSCTGNVSEAERMLNEMIESGSQPTIF 444

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
             +SL+      G  +  +  F ++L  G  P+ + C  LL    + 
Sbjct: 445 VLTSLVQCYGKVGRTDDVVKTFNQLLDLGISPDDRFCGCLLNVMTQT 491



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 113/239 (47%), Gaps = 7/239 (2%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           D+ +   +  +G+  ++  ALR YD ++      +     T+I + G+ G+Y     +Y+
Sbjct: 232 DVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAGNYDGCLNVYQ 291

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           +++   V  N+ ++N+L++    A        +Y  M   G   +  +Y  LL+A     
Sbjct: 292 EMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASLLRAYGRGR 351

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM-LSAGVTPN 397
            +  A  +Y E+K    KG ++++   Y+T++ + AD      A ++ EDM  SA    +
Sbjct: 352 YSEDALFVYKEMKE---KG-MEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTSATCLCD 407

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           + T+SSLI   +  G V +A  +  EM+++G +P       L+Q   +  + D   + F
Sbjct: 408 SWTFSSLITIYSCTGNVSEAERMLNEMIESGSQPTIFVLTSLVQCYGKVGRTDDVVKTF 466



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 38/221 (17%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +V  Y+  +KVF  +K      K+ ++ML  GV P+ +T+S++I+      L  +A+  F
Sbjct: 161 EVILYNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVTFSTIISCARICSLPNKAVEWF 220

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-----RSWTLSKTQVA-------LG 469
           E+M   GCEP+    + ++ A   A   D A RL+       W L     +       L 
Sbjct: 221 EKMSSFGCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLA 280

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CT 527
            +YDG  +    M                        K    KP    YN L+ A     
Sbjct: 281 GNYDGCLNVYQEM------------------------KVLGVKPNMVIYNTLLDAMGRAK 316

Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             ++ K++  EM   G SPN +++  L+ A G     E AL
Sbjct: 317 RPWQAKSIYTEMTNNGFSPNWVTYASLLRAYGRGRYSEDAL 357


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 30/293 (10%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           D + +  + E+      T N+ ++ SL       L+  +++ + M K G  A++ +YN +
Sbjct: 292 DELVTEMLRENCPPNEATFNVVIY-SLCRKGL--LQQAIQLLEKMSKHGCTANIVTYNAI 348

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +   C   N   A  +  ++K    K     D+ TY+T++K    A  W  A ++ ++M 
Sbjct: 349 INGLCEQRNVDGAMGLLSKMKSYGCKP----DIVTYNTLLKGLCSAAQWVDAEELMDNMT 404

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
             G  P+ +T+++LI      GL+  A+ +F++M   GC PNS   + ++    +A + D
Sbjct: 405 QNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLD 464

Query: 451 RAFRLFRSWTLSKTQVALGEDYDG-NTDRISNMEHK---DKQSITNTPNFVPNSHYSSFD 506
           +A  LF               + G N D+I  +  +   D  +I      V     S   
Sbjct: 465 QALELFNEM-----------GHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDS--- 510

Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
                 P T  YN ++   C +     A  +M  M + G  P+ +++ ILI+ 
Sbjct: 511 ---GISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEG 560



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 9/233 (3%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           E G+ RD +S L   D       +P++     +++       Y ++  + + +R++  T 
Sbjct: 179 ERGQVRDALSVL---DDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTP 235

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           N   +N LM+      D+   LE+ +N+   G      +YN +LK  C A     A E+ 
Sbjct: 236 NNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELV 295

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
            E+           +  T++ ++         Q A+++ E M   G T N +T++++IN 
Sbjct: 296 TEMLRENCPP----NEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIING 351

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
                 V+ AM L  +M   GC+P+    N LL+    A Q+  A  L  + T
Sbjct: 352 LCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMT 404



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 102/262 (38%), Gaps = 41/262 (15%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G  A + +Y  L    C AG    A+ + G +        ++ + +TY+ ++    +   
Sbjct: 130 GPAATVVAYGALTDGYCRAGRLGDARRVVGGMP-------VQPNAYTYNPLIHTLCERGQ 182

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            + AL V +DML  G  P+ +T++ L+ A        QAM L + M   GC PN+   N+
Sbjct: 183 VRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNV 242

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           L+         D A  L R+                         H  K S  N    + 
Sbjct: 243 LMDGMCGEGDVDDALELLRNLP----------------------SHGCKPSTVNYNTVLK 280

Query: 499 N----SHYSSFDK------RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
                  +   D+      R +  P   T+N+++ + C      +A  L+ +M   G + 
Sbjct: 281 GLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTA 340

Query: 547 NHISWTILIDACGGSGNVEGAL 568
           N +++  +I+      NV+GA+
Sbjct: 341 NIVTYNAIINGLCEQRNVDGAM 362



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 513 PTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           P   TYNIL++A C    Y +   L++ MR  G +PN++++ +L+D   G G+V+ AL+
Sbjct: 200 PDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALE 258



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 107/263 (40%), Gaps = 44/263 (16%)

Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKS 275
           P  +  F   +    +K  L  A++  +   KH  + N+     II+  G+C   +   +
Sbjct: 304 PPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIIN--GLCEQRNVDGA 361

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
             +   ++S     +I  +N+L+    +A       E+  NM + G + D  ++N L+  
Sbjct: 362 MGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGF 421

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----------------- 376
            C  G  V A E++   K +  KG    +  TYSTI+   A A                 
Sbjct: 422 LCQKGLMVDAIEVF---KQMPDKGCTP-NSITYSTIISGLAKATKLDQALELFNEMGHKG 477

Query: 377 ----KWWQM-------------ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
               K +Q+             A++    +  +G++P+T+ +++++      G  E A+ 
Sbjct: 478 FNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAID 537

Query: 420 LFEEMLQAGCEPNSQCCNILLQA 442
           +   M+ +GC P+     IL++ 
Sbjct: 538 IMAYMVSSGCMPDDLTYVILIEG 560


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 132/299 (44%), Gaps = 22/299 (7%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGV 320
           V G+C  G +     + +D+ S+ +  N+  FN L++V   + K     E+YK M   G+
Sbjct: 260 VRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGI 319

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             ++ +YN L+   C+      A  +      L  +     D+ T+++++K +   K   
Sbjct: 320 SPNIITYNTLMDGYCMQNRLSEANNML----DLMVRNKCSPDIVTFTSLIKGYCMVKRVD 375

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
             +KV  ++   G+  N +T+S L+     +G ++ A  LF+EM+  G  P+     ILL
Sbjct: 376 DGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 435

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
               +  + ++A  +F    L K+++ LG      T  I  M    K  + +  N     
Sbjct: 436 DGLCDNGKLEKALEIFED--LQKSKMDLG--IVMYTTIIEGMCKGGK--VEDAWNL---- 485

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
            + S   +   KP   TY +++   C      +A  L+ +M   G +PN  ++  LI A
Sbjct: 486 -FCSLPCK-GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 542



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 32/290 (11%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           ++  +NS++N    + D    L++ + M++  V AD+ +Y+ ++ + C  G    A  ++
Sbjct: 182 DVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLF 241

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
              K +E KG+ K  V TY+++V+    A  W     + +DM+S  + PN IT++ L++ 
Sbjct: 242 ---KEMETKGI-KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 297

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK---- 463
               G +++A  L++EM+  G  PN    N L+       +   A  +      +K    
Sbjct: 298 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 357

Query: 464 --TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
             T  +L + Y     R+      D   +           + +  KR        TY+IL
Sbjct: 358 IVTFTSLIKGY-CMVKRVD-----DGMKV-----------FRNISKR-GLVANAVTYSIL 399

Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           ++  C        + L  EM + G+ P+ +++ IL+D    +G +E AL+
Sbjct: 400 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE 449



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 141/343 (41%), Gaps = 92/343 (26%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----------NA 302
           PN+     ++DV    G   ++  +Y+++ ++ ++ NI  +N+LM+            N 
Sbjct: 286 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 345

Query: 303 HDL-----------KFT---------------LEVYKNMQKLGVMADMASYNILLKACCL 336
            DL            FT               ++V++N+ K G++A+  +Y+IL++  C 
Sbjct: 346 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 405

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           +G   LA+E++ E   + + GVL  DV TY  ++    D    + AL++ ED+  + +  
Sbjct: 406 SGKIKLAEELFQE---MVSHGVLP-DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDL 461

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             + ++++I      G VE A +LF  +   G +PN     +++              L 
Sbjct: 462 GIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISG------------LC 509

Query: 457 RSWTLSKTQVALGE-DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           +  +LS+  + L + + DGN                                     P  
Sbjct: 510 KKGSLSEANILLRKMEEDGNA------------------------------------PND 533

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILID 556
            TYN L++A     D      L+ EM++ G S +  S  ++ID
Sbjct: 534 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 576



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 110/268 (41%), Gaps = 48/268 (17%)

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             L+  K ++  G+  ++ + NI++   C    T  A  + G+V  L  +     D  T+
Sbjct: 96  LVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEP----DTTTF 151

Query: 367 STIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           +T++K +F + K  +  + V + M+  G  P+ +T++S++N    +G    A+ L  +M 
Sbjct: 152 NTLIKGLFLEGKVSEAVVLV-DRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKME 210

Query: 426 QAGCEPNSQCCNILLQA-CVEACQFDRAFRLFRSW-------------TLSKTQVALGED 471
           +   + +    + ++ + C + C  D A  LF+               +L +     G+ 
Sbjct: 211 ERNVKADVFTYSTIIDSLCRDGC-IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKW 269

Query: 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--Y 529
            DG       +  KD  S    PN +                   T+N+L+     +   
Sbjct: 270 NDG------ALLLKDMVSREIVPNVI-------------------TFNVLLDVFVKEGKL 304

Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDA 557
                L  EM T G+SPN I++  L+D 
Sbjct: 305 QEANELYKEMITRGISPNIITYNTLMDG 332



 Score = 45.4 bits (106), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 13/205 (6%)

Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           I V G C  G    +  +++++ S  V  ++  +  L++   +   L+  LE+++++QK 
Sbjct: 398 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 457

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
            +   +  Y  +++  C  G    A  ++     L  KGV K +V TY+ ++        
Sbjct: 458 KMDLGIVMYTTIIEGMCKGGKVEDAWNLFCS---LPCKGV-KPNVMTYTVMISGLCKKGS 513

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A  +   M   G  PN  T+++LI A    G +  +  L EEM   G   ++    +
Sbjct: 514 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 573

Query: 439 LLQACVEACQFDRAFRLFRSWTLSK 463
           ++   + A +     RL   + LSK
Sbjct: 574 VIDMLLSAMK-----RLTLRYCLSK 593


>gi|255661146|gb|ACU25742.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 426

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  VT N   +++L+ +   + KF   L ++  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 275

Query: 455 LFR 457
           LF+
Sbjct: 276 LFQ 278



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGVTPNT ++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRA 273



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 106/231 (45%), Gaps = 6/231 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  FGK+    +AL      ++     ++ +   +I++     DY K+ +I+  L+
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
               T ++  +N+++NV   A   +    +   M+  GV  + ASY+ LL         +
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  I+ E++ ++      LD+ T + ++ V+      + A K+   M   G+ PN +++
Sbjct: 132 EALSIFAEMREIKC----LLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           ++L+    +A L  +A+HLF  M +   E N    N ++    +  + ++A
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  +  ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++   
Sbjct: 212 RKNIEQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKV 267

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S+GV  + + + ++I A   AGLV  A  L  E+ +    P++   
Sbjct: 268 GKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPR 323

Query: 437 NILLQACVEACQFDRAFRLFRS 458
           +I +     A + + A  +FR 
Sbjct: 324 DIAIHILAGAGRIEEATWVFRQ 345


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 112/253 (44%), Gaps = 15/253 (5%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           YK M +  +  D+  Y I+++ C  AG     ++    +  ++ KG +  D F Y+T++K
Sbjct: 335 YKTMLERNISPDVVLYTIMIRGCAEAGRI---EDALSFLDVMKKKGFVP-DTFCYNTVLK 390

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           V  D    + A  ++ +ML   +  ++ T + +I      GLV++AM +F+EM + GC+P
Sbjct: 391 VLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDP 450

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKT-----QVALGEDYDGNTDRISNMEHKD 486
                N L+       + + A  LF    +        ++ LG +   +++ +  + H  
Sbjct: 451 TVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDM 510

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGL 544
            QS      +      S  D      P   TYN L+   C       A  L  E++  G+
Sbjct: 511 CQSGQVLKAY--KLLRSIIDS--GVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGI 566

Query: 545 SPNHISWTILIDA 557
           SP+ I++  LID 
Sbjct: 567 SPDEITYGTLIDG 579



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 89/182 (48%), Gaps = 6/182 (3%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           A+   LRS+   L+ +  + L+ +++H  +   +   + +  G+ A  +++  L+ A   
Sbjct: 92  ALSPRLRSR--PLHAHAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALVAAHSS 149

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           AG    A + +  +   +++       F Y+TI+K   D+    +AL +   M++AG  P
Sbjct: 150 AGRNADAVQAFSRMDEFQSRPT----AFVYNTILKALVDSGVILLALALYNRMVAAGCAP 205

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N  T++ L++     G+   A+ +F+EML  G  PN +   +LL +   A + D A +L 
Sbjct: 206 NRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLL 265

Query: 457 RS 458
            S
Sbjct: 266 GS 267



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 98/208 (47%), Gaps = 12/208 (5%)

Query: 253 SPNMYICRTIID-VC--GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKF 307
           +PN      ++D +C  G+ GD +K   +++++  + +  N+ ++  L++   NA  +  
Sbjct: 204 APNRATYNVLMDGLCKQGMAGDALK---MFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDE 260

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            +++  +M+  G + D  +YN  L   C  G      E +  +  L+  G   L +  YS
Sbjct: 261 AVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRV---NEAFQRLVMLQDGG-FALGLKGYS 316

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            ++     A+ +       + ML   ++P+ + ++ +I  CA AG +E A+   + M + 
Sbjct: 317 CLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKK 376

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRL 455
           G  P++ C N +L+   +    +RA  L
Sbjct: 377 GFVPDTFCYNTVLKVLCDHGDLERAHTL 404



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 22/249 (8%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN +LKA   +G  +LA  +Y     + A G    +  TY+ ++           ALK+ 
Sbjct: 175 YNTILKALVDSGVILLALALY---NRMVAAGCAP-NRATYNVLMDGLCKQGMAGDALKMF 230

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           ++ML  G+ PN   ++ L+++  NAG +++A+ L   M   GC P+    N  L    + 
Sbjct: 231 DEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKV 290

Query: 447 CQFDRAFRLFRSWTLSKTQVALG-EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
            + + AF+  R   L     ALG + Y    D +      D+             +Y + 
Sbjct: 291 GRVNEAFQ--RLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGF----------GYYKTM 338

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSG 562
            +R +  P    Y I+++  C +  R++   + ++ M+  G  P+   +  ++      G
Sbjct: 339 LER-NISPDVVLYTIMIRG-CAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHG 396

Query: 563 NVEGALQCR 571
           ++E A   R
Sbjct: 397 DLERAHTLR 405



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 25/231 (10%)

Query: 234 KRDLVS-ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           KR LV  A++ +D   +H   P +     +ID     G Y + R   E+ R         
Sbjct: 429 KRGLVDEAMQIFDEMGEHGCDPTVMTYNALID-----GFYREGR--LEEAR--------M 473

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           +F+ +   N   L   L +  N      + D  S   L+   C +G  + A   Y  ++ 
Sbjct: 474 LFHKMEMGNNPSLFLRLTLGANQ-----VCDSESLRKLVHDMCQSGQVLKA---YKLLRS 525

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +   GV+  DV TY+T++     A+    A+++ +++   G++P+ IT+ +LI+    A 
Sbjct: 526 IIDSGVVP-DVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAH 584

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
               AM LF+ +LQ+G  P+    N ++++     +  +A  L+  +   K
Sbjct: 585 RENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKK 635


>gi|326527525|dbj|BAK08037.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 460

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 102/246 (41%), Gaps = 22/246 (8%)

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N+ L A C  G    A+ +  +   L     +  DV TY+T++     A        V  
Sbjct: 14  NVCLAALCRGGGIARAESVLVDAIRLG----MPPDVVTYNTLLAAHCRASGLDAGFAVLH 69

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            M  AGV+P+ IT++SLI   A  GL  +A+ LF+EMLQAG  P++   N L+     + 
Sbjct: 70  RMREAGVSPDAITYNSLIAGAARRGLTMRALDLFDEMLQAGVAPDAWSYNALMHCLFRSG 129

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
             + A+R+F      K        Y+   D +    H      TN            + +
Sbjct: 130 HPEDAYRVFADMA-EKGVAPCATTYNTLLDGLFRFGHA-----TNAYRMF------RYLQ 177

Query: 508 RFSFKPTTTTYNILMKACC----TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
           R        TYN ++   C      Y R+  ++ E+     +PN +++T ++  C   G 
Sbjct: 178 RTGLPVGIVTYNTMINGLCKSGKVGYARM--VLRELGRTEHAPNVVTYTTVMKCCFKYGR 235

Query: 564 VEGALQ 569
            +  L+
Sbjct: 236 FDQGLE 241



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 84/187 (44%), Gaps = 18/187 (9%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--------VNAHDLKFTLEVYKNMQKLGVMADMASYNI 329
           ++ D+  + V      +N+L++         NA+       +++ +Q+ G+   + +YN 
Sbjct: 137 VFADMAEKGVAPCATTYNTLLDGLFRFGHATNAY------RMFRYLQRTGLPVGIVTYNT 190

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           ++   C +G    A+ +  E+   E       +V TY+T++K       +   L+    +
Sbjct: 191 MINGLCKSGKVGYARMVLRELGRTEHAP----NVVTYTTVMKCCFKYGRFDQGLETFLSL 246

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
           L  G  P+   + ++I+A    G +E+A    E M+++G   +S C N L+    +  + 
Sbjct: 247 LEGGYIPDLFPYCTVISALVKKGRMEEANTYSELMIRSGFRLDSACYNTLIYLRCKEGKL 306

Query: 450 DRAFRLF 456
           D AF L 
Sbjct: 307 DDAFELL 313



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 20/295 (6%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A+   +R   V+ +   +NSL+   A        L+++  M + GV  D  SYN L+   
Sbjct: 66  AVLHRMREAGVSPDAITYNSLIAGAARRGLTMRALDLFDEMLQAGVAPDAWSYNALMHCL 125

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
             +G+   A  ++ ++     KGV      TY+T++           A ++   +   G+
Sbjct: 126 FRSGHPEDAYRVFADMAE---KGVAPCAT-TYNTLLDGLFRFGHATNAYRMFRYLQRTGL 181

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
               +T++++IN    +G V  A  +  E+ +    PN      +++ C +  +FD+   
Sbjct: 182 PVGIVTYNTMINGLCKSGKVGYARMVLRELGRTEHAPNVVTYTTVMKCCFKYGRFDQGLE 241

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
            F    LS  +     D       IS +  K +    NT        YS    R  F+  
Sbjct: 242 TF----LSLLEGGYIPDLFPYCTVISALVKKGRMEEANT--------YSELMIRSGFRLD 289

Query: 515 TTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  YN L+   C +     A  L++ M   GL  +  +++IL++     G+ E A
Sbjct: 290 SACYNTLIYLRCKEGKLDDAFELLSMMEEGGLESDEYTFSILVNGLCKMGHFEAA 344


>gi|299116347|emb|CBN76149.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 129/324 (39%), Gaps = 40/324 (12%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN----VTLNIYVFNSLMNV--NAHDLKF 307
           P++    ++I+V    G   ++  I + + ++     V  ++  +NS +    +  + K 
Sbjct: 578 PDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGGVRPDVITYNSAIAACASGGESKK 637

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
             ++   M++ G+  D  SY   + AC  AGN    +E    ++ +EA  V+  DV   +
Sbjct: 638 ASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNP---EEALRLLRAMEASNVVP-DVIAMT 693

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
             +   A    W  A+ + ++M S GVTPN  T+ + I AC   G  ++A+ L   +   
Sbjct: 694 ACMDALAAGGKWSEAITILDEMRSKGVTPNERTYKAAIQACGRGGQWQRALELLSRLENR 753

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
                 Q  N  + ACV   +  RA  L      +K  V  G D                
Sbjct: 754 ASGATVQEYNCAMMACVTGGESGRALALLEQMKANKGGVNAGPDM--------------- 798

Query: 488 QSITNTPNFVPNSHYSSFDKRFSF-----------KPTTTTYNILMKAC--CTDYYRVKA 534
             +T T   +  S    +D+  S            +P   +Y   + AC     +    A
Sbjct: 799 --VTYTSAIMACSSTGKWDRALSLLDEMREAGPRTQPNIRSYTAAIAACGRARKWEEAVA 856

Query: 535 LMNEMRTVGLSPNHISWTILIDAC 558
           L +++   G+SP+  S+  +I A 
Sbjct: 857 LHSKLLEEGMSPDPASFNAVIRAA 880



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 138/368 (37%), Gaps = 90/368 (24%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD----------------- 304
           ++  C   G +  + ++  ++    VT     FN+++    H                  
Sbjct: 499 VLSACSKAGRWGSALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGGSSSGGGAAKREA 558

Query: 305 --LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
                 LE+  +M++ GV  D+ +YN L+      G    A EI   +      G ++ D
Sbjct: 559 PRWPMALELLADMERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGGVRPD 618

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL-- 420
           V TY++ +   A     + A ++  +M   G+ P+  +++S I+AC+ AG  E+A+ L  
Sbjct: 619 VITYNSAIAACASGGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPEEALRLLR 678

Query: 421 ---------------------------------FEEMLQAGCEPNSQCCNILLQACVEAC 447
                                             +EM   G  PN +     +QAC    
Sbjct: 679 AMEASNVVPDVIAMTACMDALAAGGKWSEAITILDEMRSKGVTPNERTYKAAIQACGRGG 738

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYD---------GNTDR-ISNMEH--KDKQSITNTPN 495
           Q+ RA  L  S   ++   A  ++Y+         G + R ++ +E    +K  +   P+
Sbjct: 739 QWQRALELL-SRLENRASGATVQEYNCAMMACVTGGESGRALALLEQMKANKGGVNAGPD 797

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVG--LSPNHISW 551
            V                   TY   + AC +   + R  +L++EMR  G    PN  S+
Sbjct: 798 MV-------------------TYTSAIMACSSTGKWDRALSLLDEMREAGPRTQPNIRSY 838

Query: 552 TILIDACG 559
           T  I ACG
Sbjct: 839 TAAIAACG 846



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 119/285 (41%), Gaps = 13/285 (4%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
           G   + +  LRA +AS      P++      +D     G + ++  I +++RS+ VT N 
Sbjct: 668 GNPEEALRLLRAMEASN---VVPDVIAMTACMDALAAGGKWSEAITILDEMRSKGVTPNE 724

Query: 292 YVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             + + +         +  LE+   ++     A +  YN  + AC   G +  A  +  +
Sbjct: 725 RTYKAAIQACGRGGQWQRALELLSRLENRASGATVQEYNCAMMACVTGGESGRALALLEQ 784

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG--VTPNTITWSSLINA 407
           +K  +       D+ TY++ +   +    W  AL + ++M  AG    PN  ++++ I A
Sbjct: 785 MKANKGGVNAGPDMVTYTSAIMACSSTGKWDRALSLLDEMREAGPRTQPNIRSYTAAIAA 844

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKT 464
           C  A   E+A+ L  ++L+ G  P+    N +++A     Q   + +L  S     L+  
Sbjct: 845 CGRARKWEEAVALHSKLLEEGMSPDPASFNAVIRAARRGGQHKLSMKLLASMVEAGLTPD 904

Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
            V +GE     +DR    + +    I      +P    SS D  F
Sbjct: 905 GVTVGELISSLSDRGRWDDAQRVVEIAEKTGAIP---ASSLDSDF 946



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 87/233 (37%), Gaps = 62/233 (26%)

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----- 410
           +G + LD  ++  ++   + A  W  AL V  +M  AGVTP T+ +++++ A  +     
Sbjct: 486 RGFVCLDHSSFMAVLSACSKAGRWGSALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSG 545

Query: 411 ------------AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
                       A     A+ L  +M + G EP+    N L+       Q DRA  +   
Sbjct: 546 GSSSGGGAAKREAPRWPMALELLADMERRGVEPDVVTYNSLINVLRWGGQRDRALEIL-- 603

Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518
                         DG       M  K                          +P   TY
Sbjct: 604 --------------DG-------MNAKGGAG--------------------GVRPDVITY 622

Query: 519 NILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           N  + AC +     KA  L+ EMR  GL P+  S+T  I AC  +GN E AL+
Sbjct: 623 NSAIAACASGGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPEEALR 675


>gi|326518288|dbj|BAJ88173.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326527987|dbj|BAJ89045.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 706

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 106/221 (47%), Gaps = 2/221 (0%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F    + FG+  D       +   ++  + PN+++   +++  G  G    +R ++E+
Sbjct: 283 VAFAVLAKMFGEAGDYDGIQFVFKEMREVGTKPNIFVYNALLEALGKTGKPGLARNLFEE 342

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + ++ V  N     ++  +   A   +  L+++  M++  + AD    N LL  C   G 
Sbjct: 343 MTAEGVEPNARTLTAVAKIYGRARWGRDALQLWDQMREKKIPADSILCNTLLSMCADVGL 402

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A++++ E+K  +   V + D ++Y+ ++ ++   K    AL++  +ML +G+  N +
Sbjct: 403 VAEAEQLFEEMKDPDLTDVPQPDKWSYTAMINIYGSIKDADRALQLFVEMLQSGIEANIM 462

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           +++ +I     A  +  A+ + E  L+ G +P+ + C  LL
Sbjct: 463 SYTIVIQCLGKANRIRDAVEVLEAGLERGLKPDDRLCGCLL 503



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 43/170 (25%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+K M+++G   ++  YN LL+A    G   LA+ ++ E   + A+GV + +  T + + 
Sbjct: 304 VFKEMREVGTKPNIFVYNALLEALGKTGKPGLARNLFEE---MTAEGV-EPNARTLTAVA 359

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM------ 424
           K++  A+W + AL++ + M    +  ++I  ++L++ CA+ GLV +A  LFEEM      
Sbjct: 360 KIYGRARWGRDALQLWDQMREKKIPADSILCNTLLSMCADVGLVAEAEQLFEEMKDPDLT 419

Query: 425 ---------------------------------LQAGCEPNSQCCNILLQ 441
                                            LQ+G E N     I++Q
Sbjct: 420 DVPQPDKWSYTAMINIYGSIKDADRALQLFVEMLQSGIEANIMSYTIVIQ 469



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 124/314 (39%), Gaps = 51/314 (16%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQN--VTLNIYVFNSLMNVNAHDLKFTLEV---YKNM 315
           T+I     C  + K+   +E + S    V  +   ++++++V A  L+   EV   +   
Sbjct: 215 TLITAARRCRQFAKAVEWFERMYSPGSAVLPDEVTYSAVLDVYAQ-LRMKEEVLALFDRA 273

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
           +  G   D  ++ +L K    AG+    Q ++ E++ +  K     ++F Y+ +++    
Sbjct: 274 RGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGTKP----NIFVYNALLEALGK 329

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
                +A  + E+M + GV PN  T +++      A     A+ L+++M +     +S  
Sbjct: 330 TGKPGLARNLFEEMTAEGVEPNARTLTAVAKIYGRARWGRDALQLWDQMREKKIPADSIL 389

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495
           CN LL  C +      A +LF             +D D     ++++   DK S T   N
Sbjct: 390 CNTLLSMCADVGLVAEAEQLFEEM----------KDPD-----LTDVPQPDKWSYTAMIN 434

Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
                 Y S                       D  R   L  EM   G+  N +S+TI+I
Sbjct: 435 I-----YGSI---------------------KDADRALQLFVEMLQSGIEANIMSYTIVI 468

Query: 556 DACGGSGNVEGALQ 569
              G +  +  A++
Sbjct: 469 QCLGKANRIRDAVE 482



 Score = 42.0 bits (97), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
           +M   GV  D  +Y+ L+ A         A E + E  +     VL  D  TYS ++ V+
Sbjct: 200 DMVDSGVPLDNITYSTLITAARRCRQFAKAVEWF-ERMYSPGSAVLP-DEVTYSAVLDVY 257

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           A  +  +  L + +    +G  P+ + ++ L      AG  +    +F+EM + G +PN 
Sbjct: 258 AQLRMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGTKPNI 317

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWT 460
              N LL+A  +  +   A  LF   T
Sbjct: 318 FVYNALLEALGKTGKPGLARNLFEEMT 344



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 38/79 (48%)

Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409
           ++ L A     +D   ++  +K    A+ W  A ++  DM+ +GV  + IT+S+LI A  
Sbjct: 162 LRGLPADAGFAVDTILFNVALKSLRAARRWDEAERLALDMVDSGVPLDNITYSTLITAAR 221

Query: 410 NAGLVEQAMHLFEEMLQAG 428
                 +A+  FE M   G
Sbjct: 222 RCRQFAKAVEWFERMYSPG 240


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 138/321 (42%), Gaps = 40/321 (12%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--TLNIYVFNSLM-------NVNAHD 304
           PN+    T+I   G+C ++  S A    LR Q +  T N   + +L+       NVN   
Sbjct: 159 PNVVTYTTLIK--GLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNI-A 215

Query: 305 LKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
           LK   E+  +  + GV     + +Y+I++   C  G    A+E++ E+K   A+G++  D
Sbjct: 216 LKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMK---AQGMIP-D 271

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V +YST++  F  A  W  +  + ++M+  GV P+ +T+S LI+     G V +A  L E
Sbjct: 272 VISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLE 331

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
            M+Q G  PN    N L+         + A  LF    LS     L  D    T  I+  
Sbjct: 332 VMIQRGIVPNLITYNSLIDGFCMVGDLNSARELF----LSMPSKGLEPDEISYTTLINGY 387

Query: 483 ----EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALM 536
               + K+  ++ N    V  S            P  TTY  L+K           K L 
Sbjct: 388 CKTWKVKEAMNLYNEMLQVGKS------------PNVTTYGTLLKGLFQKGKVGDAKKLF 435

Query: 537 NEMRTVGLSPNHISWTILIDA 557
             M+T G+S N   + I +D 
Sbjct: 436 GVMKTYGVSANSQIYGIFLDG 456



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 140/310 (45%), Gaps = 39/310 (12%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT-----LEVYKNMQKLG 319
           G C  G + +S+ +++++  Q V  ++  F+ L++    + K T     LEV   M + G
Sbjct: 281 GFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEV---MIQRG 337

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           ++ ++ +YN L+   C+ G+   A+E++     + +KG L+ D  +Y+T++  +   K W
Sbjct: 338 IVPNLITYNSLIDGFCMVGDLNSARELF---LSMPSKG-LEPDEISYTTLINGYC--KTW 391

Query: 380 QM--ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
           ++  A+ +  +ML  G +PN  T+ +L+      G V  A  LF  M   G   NSQ   
Sbjct: 392 KVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYG 451

Query: 438 ILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           I L   C   C F+ A  LF        ++ + E+Y    D +      +          
Sbjct: 452 IFLDGLCKNDCLFE-AMELFNELKSYNFKLNI-ENYSCLIDGLCKAGKLE---------- 499

Query: 497 VPNSHYSSFDK--RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISW- 551
              + +  F+K  +   +P   TYNI++   C          L  +M   G +P+ I++ 
Sbjct: 500 ---TAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYN 556

Query: 552 TILIDACGGS 561
           T+L   C G+
Sbjct: 557 TLLCGFCEGN 566



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 101/237 (42%), Gaps = 33/237 (13%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           PN+    ++ID   + GD   +R ++  + S+ +  +   + +L+N       +K  + +
Sbjct: 340 PNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNL 399

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK------HLEAKGVL------ 359
           Y  M ++G   ++ +Y  LLK     G    A++++G +K      + +  G+       
Sbjct: 400 YNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCK 459

Query: 360 -------------------KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
                              KL++  YS ++     A   + A ++ E +   G+ P+ +T
Sbjct: 460 NDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVT 519

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           ++ +I+     G V+ A  LFE+M + GC P+    N LL    E  + +   +L  
Sbjct: 520 YNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLH 576



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/245 (18%), Positives = 110/245 (44%), Gaps = 6/245 (2%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           +I +   +  + K   +  A+  Y+   +   SPN+    T++      G    ++ ++ 
Sbjct: 377 EISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFG 436

Query: 281 DLRSQNVTLNIYVFNSLMN-VNAHDLKF-TLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            +++  V+ N  ++   ++ +  +D  F  +E++  ++      ++ +Y+ L+   C AG
Sbjct: 437 VMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAG 496

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A E++   + L  +G L+ DV TY+ ++  F        A  + E M   G TP+ 
Sbjct: 497 KLETAWELF---EKLSQEG-LQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDI 552

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           I +++L+        +E+ + L  +M+Q    PN+  C I++    +  ++ +   L   
Sbjct: 553 IAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPK 612

Query: 459 WTLSK 463
           + + +
Sbjct: 613 FPVQR 617



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 22/218 (10%)

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
           L  D+FT S +     +      AL     +L  G  PN +T+++LI        + +A 
Sbjct: 122 LSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEAT 181

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG-----EDYD 473
            LF  M + GC PN+     L++   +    + A +L +      +Q  +        Y 
Sbjct: 182 RLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYS 241

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILMKA-CCTDYY 530
              D +  +  +D+                 F+  K     P   +Y+ L+   CC   +
Sbjct: 242 IIIDGLCKVGREDEAK-------------ELFEEMKAQGMIPDVISYSTLIHGFCCAGKW 288

Query: 531 -RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            + K L +EM   G+ P+ +++++LID     G V  A
Sbjct: 289 DQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEA 326


>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 731

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 142/320 (44%), Gaps = 37/320 (11%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E +   N+  +++    LMN    D       +VYK M + GV+ ++  YN L+ AC 
Sbjct: 152 VFEQMSLCNLKPHLHACTVLMNSLLKDGITSMVWKVYKRMVQDGVVPNIYVYNCLIHACS 211

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            + +   A+ I  E   +E KGV+  D+FTY+T++ ++        AL V++ M   G+ 
Sbjct: 212 KSRDVERAEFILNE---MEVKGVVP-DIFTYNTLIALYCKKGLHYEALSVQDKMEREGIN 267

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            + ++++SLI      G + +AM +F E+  A   PN      L+    +A +F+ A RL
Sbjct: 268 LDIVSYNSLIYGFCKEGKMREAMRMFGEIKDA--IPNHVTYTTLIDGYCKANEFEEALRL 325

Query: 456 FRSWTLSK--------------TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
            R   ++K                 + G   D N   +  M  +  Q+ + T N + N++
Sbjct: 326 -REMMVAKGLYPGVVTYNSILRKLCSDGRIRDAN-KLLHEMSERKVQADSVTCNTLINAY 383

Query: 502 --YSSFDKRFSFK---------PTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNH 548
                 +    FK         P + TY  L+   C  ++    K L+  M   G SPN+
Sbjct: 384 CKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSELESAKELLFGMLDAGFSPNY 443

Query: 549 ISWTILIDACGGSGNVEGAL 568
            +++ ++D+     N +  L
Sbjct: 444 RTYSWIVDSYCKKDNTDAVL 463



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 155/382 (40%), Gaps = 45/382 (11%)

Query: 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV--- 180
           +++G    V  V K++ + GV P    +   +  L + C +  D    E  +  MEV   
Sbjct: 176 LKDGITSMVWKVYKRMVQDGVVP----NIYVYNCLIHACSKSRDVERAEFILNEMEVKGV 231

Query: 181 ---LEEFRLPV-----KELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
              +  +   +     K L  E   VQ  + +  +NL I          + + + +  F 
Sbjct: 232 VPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGINLDI----------VSYNSLIYGFC 281

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           K+  +  A+R +   K  +  PN     T+ID  G C   ++ ++  + E + ++ +   
Sbjct: 282 KEGKMREAMRMFGEIKDAI--PNHVTYTTLID--GYCKANEFEEALRLREMMVAKGLYPG 337

Query: 291 IYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           +  +NS++     D  ++   ++   M +  V AD  + N L+ A C  G+  L   +  
Sbjct: 338 VVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGD--LNSALKF 395

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           + K LEA   L  + FTY  ++  F      + A ++   ML AG +PN  T+S ++++ 
Sbjct: 396 KTKMLEAG--LTPNSFTYKALIHGFCKTSELESAKELLFGMLDAGFSPNYRTYSWIVDSY 453

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPN--------SQCCNILLQACVEACQFDRAFRLFRSWT 460
                 +  + L +E L  G   N         + C I    C E   +    +     +
Sbjct: 454 CKKDNTDAVLALPDEFLSKGFCLNISLYRALIRRLCKIERIECAEKLLYHMEGKGISGDS 513

Query: 461 LSKTQVALGEDYDGNTDRISNM 482
           +  T +A      GNT+  S+M
Sbjct: 514 VIYTSLAFSYWKSGNTNAASDM 535



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 83/220 (37%), Gaps = 42/220 (19%)

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           S IV  +A +K    A++V E M    + P+    + L+N+    G+      +++ M+Q
Sbjct: 134 SWIVIHYAKSKMTHDAVQVFEQMSLCNLKPHLHACTVLMNSLLKDGITSMVWKVYKRMVQ 193

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            G  PN    N L+ AC ++   +RA            +  L E           ME K 
Sbjct: 194 DGVVPNIYVYNCLIHACSKSRDVERA------------EFILNE-----------MEVKG 230

Query: 487 KQSITNTPNFV------PNSHYSSFD-----KRFSFKPTTTTYNILMKACCTDYYRVKAL 535
                 T N +         HY +       +R        +YN L+   C +      +
Sbjct: 231 VVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKE----GKM 286

Query: 536 MNEMRTVG----LSPNHISWTILIDACGGSGNVEGALQCR 571
              MR  G      PNH+++T LID    +   E AL+ R
Sbjct: 287 REAMRMFGEIKDAIPNHVTYTTLIDGYCKANEFEEALRLR 326


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 112/253 (44%), Gaps = 15/253 (5%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           YK M +  +  D+  Y I+++ C  AG     ++    +  ++ KG +  D F Y+T++K
Sbjct: 335 YKTMLERNISPDVVLYTIMIRGCAEAGRI---EDALSFLDVMKKKGFVP-DTFCYNTVLK 390

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           V  D    + A  ++ +ML   +  ++ T + +I      GLV++AM +F+EM + GC+P
Sbjct: 391 VLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDP 450

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKT-----QVALGEDYDGNTDRISNMEHKD 486
                N L+       + + A  LF    +        ++ LG +   +++ +  + H  
Sbjct: 451 TVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDM 510

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGL 544
            QS      +      S  D      P   TYN L+   C       A  L  E++  G+
Sbjct: 511 CQSGQVLKAY--KLLRSIIDS--GVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGI 566

Query: 545 SPNHISWTILIDA 557
           SP+ I++  LID 
Sbjct: 567 SPDEITYGTLIDG 579



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 89/182 (48%), Gaps = 6/182 (3%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           A+   LRS+   L+ +  + L+ +++H  +   +   + +  G+ A  +++  L+ A   
Sbjct: 92  ALSPRLRSR--PLHAHAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALVAAHSS 149

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           AG    A + +  +   +++       F Y+TI+K   D+    +AL +   M++AG  P
Sbjct: 150 AGRHADAVQAFSRMDEFQSRPT----AFVYNTILKALVDSGVILLALALYNRMVAAGCAP 205

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N  T++ L++     G+   A+ +F+EML  G  PN +   +LL +   A + D A +L 
Sbjct: 206 NRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLL 265

Query: 457 RS 458
            S
Sbjct: 266 GS 267



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 98/208 (47%), Gaps = 12/208 (5%)

Query: 253 SPNMYICRTIID-VC--GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKF 307
           +PN      ++D +C  G+ GD +K   +++++  + +  N+ ++  L++   NA  +  
Sbjct: 204 APNRATYNVLMDGLCKQGMAGDALK---MFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDE 260

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            +++  +M+  G + D  +YN  L   C  G      E +  +  L+  G   L +  YS
Sbjct: 261 AVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRV---NEAFQRLVMLQDGG-FALGLKGYS 316

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            ++     A+ +       + ML   ++P+ + ++ +I  CA AG +E A+   + M + 
Sbjct: 317 CLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKK 376

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRL 455
           G  P++ C N +L+   +    +RA  L
Sbjct: 377 GFVPDTFCYNTVLKVLCDHGDLERAHTL 404



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 22/249 (8%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YN +LKA   +G  +LA  +Y     + A G    +  TY+ ++           ALK+ 
Sbjct: 175 YNTILKALVDSGVILLALALY---NRMVAAGCAP-NRATYNVLMDGLCKQGMAGDALKMF 230

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           ++ML  G+ PN   ++ L+++  NAG +++A+ L   M   GC P+    N  L    + 
Sbjct: 231 DEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKV 290

Query: 447 CQFDRAFRLFRSWTLSKTQVALG-EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
            + + AF+  R   L     ALG + Y    D +      D+             +Y + 
Sbjct: 291 GRVNEAFQ--RLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGF----------GYYKTM 338

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSG 562
            +R +  P    Y I+++  C +  R++   + ++ M+  G  P+   +  ++      G
Sbjct: 339 LER-NISPDVVLYTIMIRG-CAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHG 396

Query: 563 NVEGALQCR 571
           ++E A   R
Sbjct: 397 DLERAHTLR 405



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 103/231 (44%), Gaps = 25/231 (10%)

Query: 234 KRDLVS-ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
           KR LV  A++ +D   +H   P +     +ID     G   ++R ++  +   N   N  
Sbjct: 429 KRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGN---NPS 485

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           +F          L+ TL   +       + D  S   L+   C +G  + A   Y  ++ 
Sbjct: 486 LF----------LRLTLGANQ-------VCDSESLRKLVHDMCQSGQVLKA---YKLLRS 525

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +   GV+  DV TY+T++     A+    A+++ +++   G++P+ IT+ +LI+    A 
Sbjct: 526 IIDSGVVP-DVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAH 584

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
               AM LF+ +LQ+G  P+    N ++++     +  +A  L+  +   K
Sbjct: 585 RENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKK 635


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 118/262 (45%), Gaps = 14/262 (5%)

Query: 212 RYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271
           R   IV      F + +R F +      +++ +   K H  SP++    +++ +    G 
Sbjct: 140 RSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGR 199

Query: 272 YMKSRAIYED-LRSQNVTLNIYVFNSL-----MNVNAHDLKFTLEVYKNMQKLGVMADMA 325
              ++ +Y++ L +  VT + + FN L     MN    D      ++ ++ + G   D+ 
Sbjct: 200 TNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDD---GFRIFNDLSRFGCEPDVV 256

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALK 384
           +YN L+   C AG   +A   Y  VK +  K V L  +V TY+T+++ +   +  + AL 
Sbjct: 257 TYNTLVDGLCRAGKVTVA---YNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALA 313

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC-EPNSQCCNILLQAC 443
           V E+M++ G+  N IT+++LI     A   E+   + E     G   P++   N L+   
Sbjct: 314 VFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCH 373

Query: 444 VEACQFDRAFRLFRSWTLSKTQ 465
             A   D A ++F   +  K Q
Sbjct: 374 CHAGNLDDALKVFERMSELKIQ 395



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 25/228 (10%)

Query: 345 EIYGEVKHL------------EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           EI G  +HL             ++G++KL+   ++++++ F  A  +Q ++KV   M S 
Sbjct: 119 EILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSH 178

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCNILLQACVEACQFDR 451
           GV+P+ +T++SL+      G    A  +++EML   G  P++   NIL++        D 
Sbjct: 179 GVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDD 238

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
            FR+F       ++     D       +  +    K  +T   N V      S D     
Sbjct: 239 GFRIFNDL----SRFGCEPDVVTYNTLVDGLCRAGK--VTVAYNVVKGMGKKSVD----L 288

Query: 512 KPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDA 557
            P   TY  L++  C      KAL    EM   GL  N+I++  LI  
Sbjct: 289 NPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKG 336



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 106/239 (44%), Gaps = 18/239 (7%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN--IYVFN 295
             R ++   +    P++    T++D  G+C  G    +  + + +  ++V LN  +  + 
Sbjct: 239 GFRIFNDLSRFGCEPDVVTYNTLVD--GLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYT 296

Query: 296 SLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
           +L+       +++  L V++ M   G+ A+  +YN L+K  C A      ++I   ++  
Sbjct: 297 TLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDI---LEGT 353

Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
              G    D  T++T++     A     ALKV E M    + P++ T+S+L+ +    G 
Sbjct: 354 AGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGH 413

Query: 414 VEQAMHLFEEMLQA-------GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
            E+A  L +++L+        GC+P     N + +   E  +  +A + FR      TQ
Sbjct: 414 YEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQ 472


>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 152/350 (43%), Gaps = 28/350 (8%)

Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQ 285
           ++ F ++  +  A+  +DA KK    P+ +    ++D  G+C  GD +    +  ++   
Sbjct: 288 IQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVD--GLCKQGDVLTGYDLLVEMARN 345

Query: 286 NVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
            +   +  ++SL++    A  ++   E+++ +++ G   D   Y+I+L  CC   N  + 
Sbjct: 346 GIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVV 405

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            +++ ++ H         D + Y++++  F   +    AL V E ML +GV+PN +T + 
Sbjct: 406 CDLWNDMVHHN----FVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTI 461

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           L++      ++++A     ++ Q G  PN     +++    +  + D  + +F       
Sbjct: 462 LVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFAD----- 516

Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYNIL 521
               +   Y  +T   S +     +++      +P + +  F K      KP   TY  L
Sbjct: 517 ---MIKRGYVPDTVVYSIIIDSFVKALK-----LPEA-FRLFHKMLDEGTKPNVFTYTSL 567

Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +   C D     V  L   M   GL+P+ I +T LI       N++ AL+
Sbjct: 568 INGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALE 617



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 139/344 (40%), Gaps = 26/344 (7%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           ++   +R F +      AL  Y  +KK      + +C  ++         + +R++++D+
Sbjct: 143 VYATIIRIFVELSMFEDALLTYTEAKK--VGVELQLCNFLLKCLVERNQIIYARSLFDDM 200

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKFTL----EVYKNMQKLGVMADMASYNILLKACCLAG 338
           +S   + N+Y ++ LM+   H  +  L    E+   M+  GV  + A+Y   L       
Sbjct: 201 KSSGPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGTYLYG---LS 257

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
            T      +  ++ L  +G    + + ++ +++ F      Q A++V + M   G+ P+T
Sbjct: 258 RTRQVASAWNFLQMLCQRGN-PCNTYCFNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDT 316

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            ++S L++     G V     L  EM + G  P     + LL     A + + AF LFR 
Sbjct: 317 HSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAFELFRR 376

Query: 459 WT---LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
                     +      +G    ++     D  +     NFVP++          +  T+
Sbjct: 377 LEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDA----------YNYTS 426

Query: 516 TTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
             Y        TD   V  LM +    G+SPN ++ TIL+D  G
Sbjct: 427 LIYAFCRHRNLTDALGVFELMLD---SGVSPNVVTCTILVDGFG 467



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++  +  +    N++ + SL+N   HD  L   + ++K+M   G+  D   Y  L+   C
Sbjct: 548 LFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCYC 607

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
              N   A EI+  +  L     L  D F Y+ ++  F+       A  + E+M + G+T
Sbjct: 608 KRSNMKAALEIFRGMGKLG----LSADAFLYTCLIGGFSKVLAMDGAQCLMEEMTNKGLT 663

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           P+ +T+++LI      G   +A   +  MLQAG  P+++   IL
Sbjct: 664 PSVVTYTNLIIGYFKIGDERKANMTYNSMLQAGITPDAKLSCIL 707



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 134/344 (38%), Gaps = 60/344 (17%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           ++G +     +L ++   G+AP  +   S   LL   C+    +G+VE+   L   LEE 
Sbjct: 328 KQGDVLTGYDLLVEMARNGIAPTLV---SYSSLLHGLCR----AGKVELAFELFRRLEE- 379

Query: 185 RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE----------FGKK 234
               +    +  +  + +N    +L I   C +   D++  NFV +          F + 
Sbjct: 380 ----QGFKHDHIVYSIILNGCCQHLNIEVVCDLWN-DMVHHNFVPDAYNYTSLIYAFCRH 434

Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
           R+L  AL  ++       SPN+  C  ++D  G      K R I E              
Sbjct: 435 RNLTDALGVFELMLDSGVSPNVVTCTILVDGFG------KERMIDEAF------------ 476

Query: 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
                         L ++K +++ G++ ++  Y +++   C    +     ++G    + 
Sbjct: 477 --------------LFLHK-VRQFGIVPNLCMYRVIINGLCKVNKS---DHVWGIFADMI 518

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            +G +  D   YS I+  F  A     A ++   ML  G  PN  T++SLIN   +   +
Sbjct: 519 KRGYVP-DTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRL 577

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            + + LF+ M+  G  P+      L+    +      A  +FR 
Sbjct: 578 PEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRG 621


>gi|297805886|ref|XP_002870827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316663|gb|EFH47086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 7/163 (4%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           + NSL+     D  +  +++K M KLGV+A++  YN+L+ AC  +G++  A+++  E   
Sbjct: 174 LLNSLVKERLTDTVW--KIFKKMVKLGVVANIHVYNVLVHACSKSGDSEKAEKLLSE--- 228

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +E KGV   D+FTY+T++ V+        AL V++ M  +GV P+ +T++SLI+  +  G
Sbjct: 229 MEEKGVFP-DIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPDIVTYNSLIHGFSREG 287

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            + +A  LF + ++     N      L+         D A RL
Sbjct: 288 RMREATRLFRK-IKGVVMANHVTYTTLIDGYCRMNDIDEALRL 329



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 93/190 (48%), Gaps = 7/190 (3%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN-AHDLKF-TLEVY 312
           N+++   ++  C   GD  K+  +  ++  + V  +I+ +N+L++V     + F  L V 
Sbjct: 202 NIHVYNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQ 261

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M++ GV  D+ +YN L+      G    A  ++ ++K     GV+  +  TY+T++  
Sbjct: 262 DRMERSGVAPDIVTYNSLIHGFSREGRMREATRLFRKIK-----GVVMANHVTYTTLIDG 316

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +        AL+++E M S G  P  +T++S++      G + +A  L  EM     EP+
Sbjct: 317 YCRMNDIDEALRLREVMESRGFCPGVVTYNSILRKLCEDGRIREANRLLTEMSVKKIEPD 376

Query: 433 SQCCNILLQA 442
           +  CN L+ A
Sbjct: 377 NITCNTLINA 386



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 93/219 (42%), Gaps = 37/219 (16%)

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           +S ++  +A +     ++ V E ++S G+ P+    + L+N+     L +    +F++M+
Sbjct: 136 FSWLMIFYAKSGMINDSIAVFEQIMSCGLKPHLQACTVLLNSLVKERLTDTVWKIFKKMV 195

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
           + G   N    N+L+ AC ++   ++A +L                       +S ME K
Sbjct: 196 KLGVVANIHVYNVLVHACSKSGDSEKAEKL-----------------------LSEMEEK 232

Query: 486 DKQSITNTPNFV------PNSHYSSFD-----KRFSFKPTTTTYNILMKACCTDYYRVKA 534
                  T N +       + H+ +       +R    P   TYN L+     +    +A
Sbjct: 233 GVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPDIVTYNSLIHGFSREGRMREA 292

Query: 535 --LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
             L  +++ V ++ NH+++T LID      +++ AL+ R
Sbjct: 293 TRLFRKIKGVVMA-NHVTYTTLIDGYCRMNDIDEALRLR 330


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 131/313 (41%), Gaps = 57/313 (18%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV 320
           + G+C  G   ++  I+E++  + +  +  ++N+L++   N  +L         M K G+
Sbjct: 298 ISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGI 357

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
              M++YN L+ A  +   T  A+ +   +K ++ KG+   D  TY+ ++  +      +
Sbjct: 358 SPTMSTYNSLIHALFMEQRTDEAECM---IKEIQEKGI-SPDAITYNILINGYCRCANAK 413

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            A  + ++ML++G+ P   T++SL++  +    +++A  LF+++   G  P++   N L+
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALI 473

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
                      AF L +             D D                           
Sbjct: 474 DGHCSNSNVKGAFELLK-------------DMD--------------------------- 493

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDAC 558
                  R    P   T+N +M+  C +      + L +EM+  G+ P+HIS+  LI   
Sbjct: 494 -------RMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGY 546

Query: 559 GGSGNVEGALQCR 571
              G+++ A + R
Sbjct: 547 SRRGDIKDAFRVR 559



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 138/327 (42%), Gaps = 38/327 (11%)

Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           C   MK + +   + + N  L+++     + +N  +  + L  Y  M +L + + + ++N
Sbjct: 173 CFYTMKEKGVLPTIETCNSLLSLF-----LKLNRTEAAWVL--YAEMFRLRIKSSVYTFN 225

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
           I++   C  G    A++  G   H+E  GV K ++ TY+TIV  +  +   + A  +   
Sbjct: 226 IMINVLCKEGKLKKAKDFVG---HMETSGV-KPNIVTYNTIVHGYCSSGRVEAADAILTT 281

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M    + P++ T+ SLI+     G +E+A  +FEEM+Q G  P++   N L+        
Sbjct: 282 MKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGN 341

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDG---------NTDR----ISNMEHKDKQSITNTPN 495
            D A   ++   L K        Y+           TD     I  ++ K       T N
Sbjct: 342 LDMA-SAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYN 400

Query: 496 FVPNSHYSSFDKRFSF-----------KPTTTTYNILMKACCTDYYRVKA--LMNEMRTV 542
            + N +    + + +F           KPT  TY  L+          +A  L  ++ + 
Sbjct: 401 ILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSE 460

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
           G+ P+ I +  LID    + NV+GA +
Sbjct: 461 GVLPDAIMFNALIDGHCSNSNVKGAFE 487



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 119/282 (42%), Gaps = 26/282 (9%)

Query: 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           Y+  S  ++N  D  F  E +  M++ GV+  + + N LL        T  A  +Y E+ 
Sbjct: 156 YLIKSCCDMNRADEAF--ECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMF 213

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            L     +K  V+T++ ++ V       + A      M ++GV PN +T++++++   ++
Sbjct: 214 RLR----IKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVAL 468
           G VE A  +   M +   EP+S     L+    +  + + A ++F       L  + V  
Sbjct: 270 GRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIY 329

Query: 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
               DG                 N  N    S Y     +    PT +TYN L+ A   +
Sbjct: 330 NTLIDG---------------FCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFME 374

Query: 529 YYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
               +A  ++ E++  G+SP+ I++ ILI+      N + A 
Sbjct: 375 QRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAF 416



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 83/174 (47%), Gaps = 37/174 (21%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAH----DLKFTLEVYKNMQKLGVMADMASYNILLKA 333
           +++ + S+ V  +  +FN+L  ++ H    ++K   E+ K+M ++ V  D  ++N +++ 
Sbjct: 453 LFKKITSEGVLPDAIMFNAL--IDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQG 510

Query: 334 CCLAGNTVLAQEIYGEVK-------HLE---------AKGVLK---------LD------ 362
            C  G    A+E++ E+K       H+           +G +K         LD      
Sbjct: 511 HCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPT 570

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           V TY+ +V+     +   +A ++ ++M+S G+TP+  T+ +LI   A   + ++
Sbjct: 571 VLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDE 624


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 16/230 (6%)

Query: 221 DILFCN-FVREFGKKRDLVSALRAYD--ASKKHLSSPNMYICRTIIDVCGICGDYMK--- 274
           D++F N  +  F K+  LV A + YD     KH   P++    T+I   G C  Y +   
Sbjct: 319 DLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKH-CFPDVVAYNTLIK--GFC-KYKRVEE 374

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
              ++ ++  + +  N   + +L++    A D      V+K M   GV  D+ +YNILL 
Sbjct: 375 GMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLD 434

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  GN   A  ++  ++    K  +KLD+ TY+T+++    A   +    +   +   
Sbjct: 435 GLCNNGNVETALVVFEYMQ----KRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK 490

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           GV PN +T++++++     GL E+A  LF EM + G  PNS   N L++A
Sbjct: 491 GVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRA 540



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 128/301 (42%), Gaps = 36/301 (11%)

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVM 321
           D  G+ GD +KSR             +I  F+ L++  A   KF L +   + MQ LG+ 
Sbjct: 58  DAIGLFGDMVKSRPFP----------SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGIS 107

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            ++ +Y+I +   C      LA  I G++  L         + T ++++  F        
Sbjct: 108 HNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGP----SIVTLNSLLNGFCHGNRISE 163

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A+ + + M+  G  P+T+T+++L++         +A+ L E M+  GC+P+      ++ 
Sbjct: 164 AVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVIN 223

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              +  + D A  L       K +  +   Y+   D +   +H D               
Sbjct: 224 GLCKRGEPDLALNLLNKMEKGKIEADV-VIYNTIIDGLCKYKHMDDA------------- 269

Query: 502 YSSFDKRFS--FKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILID 556
           +  F+K  +   KP   TYN L+ +C  +Y R      L+++M    ++P+ + +  LID
Sbjct: 270 FDLFNKMETKGIKPDVFTYNPLI-SCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALID 328

Query: 557 A 557
           A
Sbjct: 329 A 329



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 140/324 (43%), Gaps = 23/324 (7%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSL 297
           AL   +  +K     ++ I  TIID  G+C       A  ++  + ++ +  +++ +N L
Sbjct: 234 ALNLLNKMEKGKIEADVVIYNTIID--GLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPL 291

Query: 298 MNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++   N         +  +M +  +  D+  +N L+ A    G  V A+++Y E+  +++
Sbjct: 292 ISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEM--VKS 349

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           K     DV  Y+T++K F   K  +  ++V  +M   G+  NT+T+++LI+    A   +
Sbjct: 350 KHCFP-DVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCD 408

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
            A  +F++M+  G  P+    NILL         + A  +F    + K  + L  D    
Sbjct: 409 NAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFE--YMQKRDMKL--DIVTY 464

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR--VK 533
           T  I  +    K  + +  +      + S   +   KP   TY  +M   C    +    
Sbjct: 465 TTMIEALCKAGK--VEDGWDL-----FCSLSLK-GVKPNVVTYTTMMSGFCRKGLKEEAD 516

Query: 534 ALMNEMRTVGLSPNHISWTILIDA 557
           AL  EM+  G  PN  ++  LI A
Sbjct: 517 ALFVEMKEDGPLPNSGTYNTLIRA 540



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           ++ +++ + S  V  +I  +N L++   N  +++  L V++ MQK  +  D+ +Y  +++
Sbjct: 410 AQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIE 469

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
           A C AG      +++     L  KGV K +V TY+T++  F      + A  +  +M   
Sbjct: 470 ALCKAGKVEDGWDLFCS---LSLKGV-KPNVVTYTTMMSGFCRKGLKEEADALFVEMKED 525

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           G  PN+ T+++LI A    G    +  L +EM   G
Sbjct: 526 GPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCG 561


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 149/356 (41%), Gaps = 58/356 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYE 280
           +++ + +    K R +  A   +        SP+++   ++I  +C +C ++    A+  
Sbjct: 200 VVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLC-EWKHVTALLN 258

Query: 281 DLRSQNVTLNIYVFNSLMN--------VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           ++ +  +  N+ +F+++++        + AHD      V   M K GV  ++ +YN L+ 
Sbjct: 259 EMVNSKIMPNVVIFSTVVDALCKEGKVMEAHD------VVDMMIKRGVEPNVVTYNALMD 312

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             CL      A +++     +  KG    DV +YST++  +   +  + A+ + E+M   
Sbjct: 313 GHCLRSEMDEAVKVFDT---MVCKGFAP-DVVSYSTLINGYCKIQRIEKAMYLFEEMCRK 368

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            + PNT+T+S+L++   + G ++ A+ LF EM+  G  P+     ILL    +  + D A
Sbjct: 369 ELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEA 428

Query: 453 FRLFRS------------WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
             L ++            +T+    +    + +   D  SN+  K               
Sbjct: 429 IALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSK--------------- 473

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTIL 554
                       P   TY I++   C      +A  L  EM+  G SPN  ++ ++
Sbjct: 474 ---------GLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLI 520



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 14/205 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +++T + ++  F   +    A  V   +L  G  PN  T+++LI      G + + +HLF
Sbjct: 93  NIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLF 152

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
           ++M+  G +PN      L+    +      A RL RS      Q     D    T  I +
Sbjct: 153 DKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQ----PDVVVYTSIIDS 208

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEM 539
           +  KD+Q +T   N      +          P+  TYN L+ A C   ++  V AL+NEM
Sbjct: 209 L-CKDRQ-VTQAFNLFSEMIHQ------GISPSIFTYNSLIHALCNLCEWKHVTALLNEM 260

Query: 540 RTVGLSPNHISWTILIDACGGSGNV 564
               + PN + ++ ++DA    G V
Sbjct: 261 VNSKIMPNVVIFSTVVDALCKEGKV 285



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 134/352 (38%), Gaps = 76/352 (21%)

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNI 329
           Y    ++   + S  +  NIY  N L+N   H   L F   V   + KLG   ++A++N 
Sbjct: 75  YSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNT 134

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAK------------------GVLKL---------- 361
           L++  C+ G         GEV HL  K                  G+ K+          
Sbjct: 135 LIRGLCVEGKI-------GEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLL 187

Query: 362 ----------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
                     DV  Y++I+      +    A  +  +M+  G++P+  T++SLI+A  N 
Sbjct: 188 RSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNL 247

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEA--CQFDRAFRLFRSWTLSKTQVAL 468
              +    L  EM+ +   PN    + ++ A C E    +      +     +    V  
Sbjct: 248 CEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTY 307

Query: 469 GEDYDGNTDRISNMEHKDKQSITNT-PNFVPN-SHYSS-----------------FDK-- 507
               DG+  R S M+   K   T     F P+   YS+                 F++  
Sbjct: 308 NALMDGHCLR-SEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMC 366

Query: 508 RFSFKPTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILID 556
           R    P T TY+ LM   C    R++   AL +EM T G  P+ +S+ IL+D
Sbjct: 367 RKELIPNTVTYSTLMHGLC-HVGRLQDAIALFHEMVTRGQIPDFVSYCILLD 417



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 74/152 (48%), Gaps = 6/152 (3%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A+ + +   N+  +I ++  +++    A +L+   +++ N+   G+  ++ +Y I++   
Sbjct: 430 ALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGL 489

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C  G    A +++GE+K    KG    +  TY+ I + F         +++ ++ML+ G 
Sbjct: 490 CQQGLLAEASKLFGEMKR---KGY-SPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGF 545

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + +  T + L+   ++ GL +    +  E LQ
Sbjct: 546 SADVSTSTVLVEMLSDDGLDQSVKQILSEFLQ 577


>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Cucumis sativus]
          Length = 580

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 158/356 (44%), Gaps = 26/356 (7%)

Query: 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
           +++ F   +  +GK  D   A +  +   K   +PN+     +++  G    Y  + AI+
Sbjct: 137 SEMDFVMLITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIF 196

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYK---NMQKLGVMADMASYNILLKAC 334
             ++S     +   +  ++   V     K   E++    N +K  +  D   +++++   
Sbjct: 197 RRMQSGGPEPSALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMF 256

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
             AGN   A++++ E   + A+GV +  V TY++++    +   ++   K+ + M  AG+
Sbjct: 257 KKAGNYEKARKVFAE---MAARGVPQTTV-TYNSLMSFETN---YKEVSKIYDQMQRAGL 309

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+ ++++ LI+A   A   E+A+ +FEEML AG  P  +  NILL A   +   ++A  
Sbjct: 310 QPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKI 369

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           +F+S    +       D    T  +S        +  N  +     ++    K+  F+P 
Sbjct: 370 VFKSMKRDRC----SPDICSYTTMLS--------AYVNASDMEGAENFFRRLKQDGFRPN 417

Query: 515 TTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             TY  L+K  A   +  ++     EM+  G+  N    T ++DA G + +   A+
Sbjct: 418 VVTYGTLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTILTTIMDAYGKNKDFGSAV 473



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 104/275 (37%), Gaps = 69/275 (25%)

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307
           +K +  P+  +   II +    G+Y K+R ++ ++ ++ V      +NSLM+    + K 
Sbjct: 238 EKPVLKPDQKMFHMIIYMFKKAGNYEKARKVFAEMAARGVPQTTVTYNSLMSFET-NYKE 296

Query: 308 TLEVYKNMQKLGVMADMASY-----------------------------------NILLK 332
             ++Y  MQ+ G+  D+ SY                                   NILL 
Sbjct: 297 VSKIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLD 356

Query: 333 ACCLAGNTVLAQEIYGEVKH--------------------------------LEAKGVLK 360
           A  ++G    A+ ++  +K                                 L+  G  +
Sbjct: 357 AFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDG-FR 415

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            +V TY T++K +A     +  +K  E+M   G+  N    +++++A         A+  
Sbjct: 416 PNVVTYGTLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTILTTIMDAYGKNKDFGSAVIW 475

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           F E+   G  P+ +  NILL     A + D A +L
Sbjct: 476 FNEIESCGLRPDQKAKNILLSLAKTAEELDEANQL 510


>gi|242058297|ref|XP_002458294.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
 gi|241930269|gb|EES03414.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
          Length = 534

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 13/215 (6%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK-SRAIYEDL 282
           F   +R F +    ++AL  + ++   L+ P+       +    +   ++  +R++  D+
Sbjct: 95  FLGLLRAFSRTHRPLAALHLFRSAPSDLALPHSARSYNAVLAALVAHSHLPLARSLLADM 154

Query: 283 RSQNVTLNIYVFNSLMNVN----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           R+         +N L+       A D+K  L +++N+ K     D+ SYN ++   C  G
Sbjct: 155 RAAGFAPTAATYNVLLKAQCSDAAADIKDALRLFRNIPK----PDVCSYNTIIDGLCRRG 210

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A E++ E+        +   V TY+T++   A    +  ALK+ ++M   GV+PN 
Sbjct: 211 RLAAALEMFSEM----VGKCIAPTVVTYTTLIHWLAREGCFDDALKIFDEMGRRGVSPNL 266

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           +T+SSLI+     G    A+ L + M++    PN+
Sbjct: 267 VTYSSLIDGLCKGGRAASALELMDRMIKEKKLPNT 301



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 110/234 (47%), Gaps = 21/234 (8%)

Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYV 293
           D+  ALR +    +++  P++    TIID  G+C  G    +  ++ ++  + +   +  
Sbjct: 180 DIKDALRLF----RNIPKPDVCSYNTIID--GLCRRGRLAAALEMFSEMVGKCIAPTVVT 233

Query: 294 FNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           + +L++  A +  F   L+++  M + GV  ++ +Y+ L+   C  G    A E+   + 
Sbjct: 234 YTTLIHWLAREGCFDDALKIFDEMGRRGVSPNLVTYSSLIDGLCKGGRAASALELMDRM- 292

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            ++ K +   +  TYS+++           A++V + M   G  P+   +  LI    +A
Sbjct: 293 -IKEKKLP--NTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKLIVGLCDA 349

Query: 412 GLVEQAMHLFEEMLQAGCEPN-------SQCCNILLQACVEACQFDRAFRLFRS 458
           G   +A +  +EM+ AG EPN       ++  N +L A     +  RAF++++S
Sbjct: 350 GRAVEAANYLDEMILAGIEPNRVTWSLHTRINNTVLTALCAKGELGRAFQVYQS 403



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 45/235 (19%), Positives = 95/235 (40%), Gaps = 10/235 (4%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDY 272
           CI P   + +   +    ++     AL+ +D   +   SPN+    ++ID  G+C  G  
Sbjct: 226 CIAPTV-VTYTTLIHWLAREGCFDDALKIFDEMGRRGVSPNLVTYSSLID--GLCKGGRA 282

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
             +  + + +  +    N   ++S+++     H L   +EV   M+  G   D   +  L
Sbjct: 283 ASALELMDRMIKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKL 342

Query: 331 LKACCLAGNTVLAQEIYGE--VKHLEAKGVL-KLDVFTYSTIVKVFADAKWWQMALKVKE 387
           +   C AG  V A     E  +  +E   V   L     +T++           A +V +
Sbjct: 343 IVGLCDAGRAVEAANYLDEMILAGIEPNRVTWSLHTRINNTVLTALCAKGELGRAFQVYQ 402

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
              +  ++ +  T+  L+ + +    +E+A H+  +ML   C P  +  ++++  
Sbjct: 403 STRTRSISTDPTTFHLLVESFSKKKNMEKAAHVVLDMLSERCIPERETWDVIISG 457


>gi|298712181|emb|CBJ33053.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 845

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 82/167 (49%), Gaps = 4/167 (2%)

Query: 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGV 320
           I  CG C  + ++ ++  ++ ++ +   +  + + +   A  +     +E+ + +  +G+
Sbjct: 260 ITACGRCKQWQRAISLLREITTEGLAPGLVSYGAAITACATCNQGDAAVELLRELPIVGI 319

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             D   Y  ++ AC  AG    A +++ E+  L      + D  +YS ++    +   W+
Sbjct: 320 TPDSMVYTSVISACGRAGQWERAVDLFREISMLRVG--FRPDAVSYSAVITALGEGGQWE 377

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            AL+   +M  AGV P+ + ++S + ACA +G  E+A  L  EMLQA
Sbjct: 378 EALRFLREMPQAGVKPDVVCFNSAVTACAKSGRWEEAGGLLREMLQA 424



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 105/225 (46%), Gaps = 11/225 (4%)

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK-SRAIYEDLRSQ-NVTLNIYVFNS 296
           +ALR  D  +     P+ ++ R  I  CG  GD ++ +  +  D+R   +V +++  FN+
Sbjct: 200 AALRVLDDLRAAGIKPDSFVYRAAITACG-NGDKLEMALQLLRDMREDPDVPVDVASFNA 258

Query: 297 LMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
            +         +  + + + +   G+   + SY   + AC        A E+   ++ L 
Sbjct: 259 AITACGRCKQWQRAISLLREITTEGLAPGLVSYGAAITACATCNQGDAAVEL---LRELP 315

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED--MLSAGVTPNTITWSSLINACANAG 412
             G+   D   Y++++     A  W+ A+ +  +  ML  G  P+ +++S++I A    G
Sbjct: 316 IVGITP-DSMVYTSVISACGRAGQWERAVDLFREISMLRVGFRPDAVSYSAVITALGEGG 374

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
             E+A+    EM QAG +P+  C N  + AC ++ +++ A  L R
Sbjct: 375 QWEEALRFLREMPQAGVKPDVVCFNSAVTACAKSGRWEEAGGLLR 419



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 36/208 (17%)

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           + +V T++  ++    A  W+ AL +   ML+  + PN  +++S I AC  AG  EQA++
Sbjct: 517 RPNVATFNAAMQAAGSAGEWREALTLLRGMLAEKIAPNATSYTSAIAACGFAGEWEQALN 576

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           L   + +   +      N  ++AC EA +F+ A  + R                      
Sbjct: 577 LLRALKKGEGKLGVGAYNAAIKACGEAGRFEEAVGILR---------------------- 614

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMN 537
             ME      I            SS   R + +P  TTY   + AC    +Y R   L+ 
Sbjct: 615 -EMEADVGLEIP-----------SSSTTRTTSRPDVTTYTAAIAACGRAGEYRRAVLLLR 662

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVE 565
           EM TVG++P+ IS+   + ACG SG  E
Sbjct: 663 EMPTVGITPSGISYNAAMTACGRSGQWE 690



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/322 (18%), Positives = 127/322 (39%), Gaps = 57/322 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIYVFNSLMNVNAHDLKF 307
           +PN+     +I  CG CG    +  + E +++       +  +++  ++ ++      ++
Sbjct: 139 TPNVNTMSAVITACGRCGQGKAALEVLERMKTIGDEAGGLKPDLHCLSAAIDAAGGAGEW 198

Query: 308 --TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
              L V  +++  G+  D   Y   + AC       +A ++   ++ +     + +DV +
Sbjct: 199 EAALRVLDDLRAAGIKPDSFVYRAAITACGNGDKLEMALQL---LRDMREDPDVPVDVAS 255

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           ++  +      K WQ A+ +  ++ + G+ P  +++ + I ACA     + A+ L  E+ 
Sbjct: 256 FNAAITACGRCKQWQRAISLLREITTEGLAPGLVSYGAAITACATCNQGDAAVELLRELP 315

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
             G  P+S     ++ AC  A Q++RA  LFR                     IS +   
Sbjct: 316 IVGITPDSMVYTSVISACGRAGQWERAVDLFRE--------------------ISML--- 352

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVG 543
                                 R  F+P   +Y+ ++ A        +AL  + EM   G
Sbjct: 353 ----------------------RVGFRPDAVSYSAVITALGEGGQWEEALRFLREMPQAG 390

Query: 544 LSPNHISWTILIDACGGSGNVE 565
           + P+ + +   + AC  SG  E
Sbjct: 391 VKPDVVCFNSAVTACAKSGRWE 412



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------HDLKF 307
           PN+      +   G  G++ ++  +   + ++ +  N   + S +            L  
Sbjct: 518 PNVATFNAAMQAAGSAGEWREALTLLRGMLAEKIAPNATSYTSAIAACGFAGEWEQALNL 577

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL------ 361
              + K   KLGV A    YN  +KAC  AG     +E  G ++ +EA   L++      
Sbjct: 578 LRALKKGEGKLGVGA----YNAAIKACGEAGRF---EEAVGILREMEADVGLEIPSSSTT 630

Query: 362 ------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
                 DV TY+  +     A  ++ A+ +  +M + G+TP+ I++++ + AC  +G  E
Sbjct: 631 RTTSRPDVTTYTAAIAACGRAGEYRRAVLLLREMPTVGITPSGISYNAAMTACGRSGQWE 690

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            ++ L  EM + G  P+    N ++ A  +A +++RA  L    + S    A+  DY
Sbjct: 691 LSLSLLREMAKLGVSPDVVSFNSVMSALGDAGEWERAVGLLGEISGSGGGDAVRPDY 747



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 36/218 (16%)

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG--------VTPNTITWSSLINACANAG 412
           + V+ Y+  +   +  K W+ AL+V + M++A         +TPN  T S++I AC   G
Sbjct: 97  MTVYMYTACITTMSKCKRWREALEVLDRMMAAAQEEGGGGELTPNVNTMSAVITACGRCG 156

Query: 413 LVEQAMHLFEEML-----QAGCEPNSQCCNILLQACVEACQFDRAFRL---FRSWTLSKT 464
             + A+ + E M        G +P+  C +  + A   A +++ A R+    R+  +   
Sbjct: 157 QGKAALEVLERMKTIGDEAGGLKPDLHCLSAAIDAAGGAGEWEAALRVLDDLRAAGIKPD 216

Query: 465 QVALGEDYD--GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522
                      GN D++  M  +  + +   P+ VP                  ++N  +
Sbjct: 217 SFVYRAAITACGNGDKL-EMALQLLRDMREDPD-VPVD--------------VASFNAAI 260

Query: 523 KAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
            AC  C  + R  +L+ E+ T GL+P  +S+   I AC
Sbjct: 261 TACGRCKQWQRAISLLREITTEGLAPGLVSYGAAITAC 298



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 66/145 (45%), Gaps = 2/145 (1%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P++      I  CG  G+Y ++  +  ++ +  +T +   +N+ M     +   + +L +
Sbjct: 636 PDVTTYTAAIAACGRAGEYRRAVLLLREMPTVGITPSGISYNAAMTACGRSGQWELSLSL 695

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M KLGV  D+ S+N ++ A   AG    A  + GE+        ++ D  +++T ++
Sbjct: 696 LREMAKLGVSPDVVSFNSVMSALGDAGEWERAVGLLGEISGSGGGDAVRPDYVSFATAIR 755

Query: 372 VFADAKWWQMALKVKEDMLSAGVTP 396
               A     A  ++ +  S G+ P
Sbjct: 756 ACEMAGRLDDAAGLRAEAASLGLLP 780


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 159/387 (41%), Gaps = 58/387 (14%)

Query: 207 VNLA---IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263
           VNLA   + +  I     +++   +R +    D  +AL  Y     +    N Y    ++
Sbjct: 58  VNLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLL 117

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVM-- 321
             C     + +++ I+  +  +   L +Y  NSL+ V A        +  N+Q   V+  
Sbjct: 118 KACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYA--------ISGNIQSAHVLFN 169

Query: 322 ----ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
                D+ S+NI++      GN  +A +I+        + + + +V +++T++  F    
Sbjct: 170 QLPTRDIVSWNIMIDGYIKFGNLDMAYKIF--------QAMPEKNVISWTTMIVGFVRIG 221

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA--MHLFEEMLQAGCEPNSQC 435
             + AL + + ML AG+ P++IT S  ++ACA  G +EQ   +H + E  +   +P   C
Sbjct: 222 MHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGC 281

Query: 436 CNILLQACVEACQFDRAFRLFR--------SWTLSKTQVALGEDYDGNTDRISNMEHK-- 485
             +L    V+  + ++A  +F         +WT     +A+        D  + M+    
Sbjct: 282 --VLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGI 339

Query: 486 DKQSITNTPNFVPNSH----------YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL 535
           +  SIT T      SH          + S    ++ KP+   Y      C  D      L
Sbjct: 340 NPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHY-----GCMVDLMGRAGL 394

Query: 536 MNEMR----TVGLSPNHISWTILIDAC 558
           + E R    ++ + PN   W  L++AC
Sbjct: 395 LKEAREFIESMPVKPNAAIWGALLNAC 421



 Score = 42.4 bits (98), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 31/242 (12%)

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL-KVKEDMLSAGVTPNTITWSS 403
           +I+G+   L  KG ++ +  T ST++  +A  +   +A  +V  D +S   +PNT+ W++
Sbjct: 28  QIHGQ---LLKKGTIR-NQLTVSTLLVSYARIELVNLAYTRVVFDSIS---SPNTVIWNT 80

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           ++ A +N+   E A+ L+ +ML      NS     LL+AC     F+   ++     + K
Sbjct: 81  MLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAH--IIK 138

Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF----DKRFSFKPTTTTYN 519
               L E Y  N+         + QS     N +P     S+    D    F      Y 
Sbjct: 139 RGFGL-EVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYK 197

Query: 520 ILM----------KACCTDYYRVK------ALMNEMRTVGLSPNHISWTILIDACGGSGN 563
           I                  + R+       +L+ +M   G+ P+ I+ +  + AC G G 
Sbjct: 198 IFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGA 257

Query: 564 VE 565
           +E
Sbjct: 258 LE 259


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 115/250 (46%), Gaps = 25/250 (10%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++ + ++  G + D+ +YN+++   C AG      EI   +  L+   V   DV TY+TI
Sbjct: 158 KILEVLEGSGAVPDVITYNVMISGYCKAG------EINNALSVLDRMSV-SPDVVTYNTI 210

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAG 428
           ++   D+   + A++V + ML     P+ IT++ LI A C ++G V QAM L +EM   G
Sbjct: 211 LRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG-VGQAMKLLDEMRDRG 269

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK-DK 487
           C P+    N+L+    +  + D A +       S  Q  +             + H    
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNV-------------ITHNIIL 316

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
           +S+ +T  ++      +   R  F P+  T+NIL+   C      +A  ++ +M   G  
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQ 376

Query: 546 PNHISWTILI 555
           PN +S+  L+
Sbjct: 377 PNSLSYNPLL 386



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/321 (20%), Positives = 127/321 (39%), Gaps = 55/321 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
           SP++    TI+      G   ++  + + +  ++   ++  +  L+     D  +   ++
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMK 260

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +   M+  G   D+ +YN+L+   C  G      E    +  + + G  + +V T++ I+
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRL---DEAIKFLNDMPSSGC-QPNVITHNIIL 316

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +       W  A K+  DML  G +P+ +T++ LIN     GL+ +A+ + E+M + GC+
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQ 376

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PNS   N LL    +  + DRA                                      
Sbjct: 377 PNSLSYNPLLHGFCKEKKMDRAIEYLE--------------------------------- 403

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNH 548
                 V    Y          P   TYN ++ A C D     A  ++N++ + G SP  
Sbjct: 404 ----RMVSRGCY----------PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL 449

Query: 549 ISWTILIDACGGSGNVEGALQ 569
           I++  +ID    +G    A++
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIK 470



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 16/229 (6%)

Query: 235 RDLVSALRAYDASK------KHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQN 286
           R + S  R  DA K      +   SP++     +I+   +C   +  RAI   E +    
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINF--LCRKGLLGRAIDILEKMPKHG 374

Query: 287 VTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
              N   +N L++    + K    +E  + M   G   D+ +YN +L A C  G    A 
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           EI   +  L +KG   + + TY+T++   A A     A+K+ ++M +  + P+TIT+SSL
Sbjct: 435 EI---LNQLSSKGCSPV-LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSL 490

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           +   +  G V++A+  F E  + G  PN+   N ++    +  Q DRA 
Sbjct: 491 VGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAI 539



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/343 (19%), Positives = 138/343 (40%), Gaps = 66/343 (19%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G  MK   + +++R +  T ++  +N L+N       L   ++   +M   G   ++ ++
Sbjct: 256 GQAMK---LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITH 312

Query: 328 NILLKACCLAGNTVLAQEIYGE----------------VKHLEAKGVL--KLDVF----- 364
           NI+L++ C  G  + A+++  +                +  L  KG+L   +D+      
Sbjct: 313 NIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPK 372

Query: 365 --------TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
                   +Y+ ++  F   K    A++  E M+S G  P+ +T+++++ A    G VE 
Sbjct: 373 HGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVED 432

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF--------RSWTLSKTQVAL 468
           A+ +  ++   GC P     N ++    +A +  +A +L         +  T++ + +  
Sbjct: 433 AVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVG 492

Query: 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
           G   +G  D      H+                   F+ R   +P   T+N +M   C  
Sbjct: 493 GLSREGKVDEAIKFFHE-------------------FE-RMGVRPNAVTFNSIMLGLCKT 532

Query: 529 YYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
               +A+  +  M   G  P   S+TILI+     G  + AL+
Sbjct: 533 RQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALE 575



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 10/214 (4%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLN 290
           +K  L  A+   +   KH   PN      ++   G C +    RAI   E + S+    +
Sbjct: 356 RKGLLGRAIDILEKMPKHGCQPNSLSYNPLLH--GFCKEKKMDRAIEYLERMVSRGCYPD 413

Query: 291 IYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           I  +N+++     D K    +E+   +   G    + +YN ++     AG T  A ++  
Sbjct: 414 IVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLD 473

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E++  +    LK D  TYS++V   +       A+K   +    GV PN +T++S++   
Sbjct: 474 EMRAKD----LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGL 529

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
                 ++A+     M+  GC+P      IL++ 
Sbjct: 530 CKTRQTDRAIDFLVYMINRGCKPTETSYTILIEG 563



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 17/190 (8%)

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
             K  E+M+  G  P+ I  ++LI      G   +A  + E +  +G  P+    N+++ 
Sbjct: 121 GFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMIS 180

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              +A + + A  +    ++S   V          D       K KQ++      +    
Sbjct: 181 GYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCD-----SGKLKQAMEVLDRMLQRDC 235

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACG 559
           Y          P   TY IL++A C D    +A  L++EMR  G +P+ +++ +L++   
Sbjct: 236 Y----------PDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 560 GSGNVEGALQ 569
             G ++ A++
Sbjct: 286 KEGRLDEAIK 295


>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
 gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
          Length = 690

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 150/371 (40%), Gaps = 62/371 (16%)

Query: 210 AIRYACIVPRADIL-FCNFVREFGKKRDLVSALRAYDA-SKKHLS-SPNMYICRTIIDVC 266
           A+   C   R D++ +   V    K   +  ALR  D  S++ L   P++    T++D  
Sbjct: 160 ALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVD-- 217

Query: 267 GIC--GDYMKSRAIYEDLRS--QNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGV 320
           G+C  G   ++ A  E   S       N   +N L++      ++    E+ + M+  GV
Sbjct: 218 GLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGV 277

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             ++ + N ++   C AG T  A E + E + +  +G  K +  TYST+V          
Sbjct: 278 PQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEG--KGNAVTYSTLVGALLHTNNVG 335

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           MA+++  + +S G +P+ I + ++I+    AG +E A  +   M +AG + +++  NIL+
Sbjct: 336 MAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILI 395

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
                   F R  RL  ++ L +                                     
Sbjct: 396 AG------FCRKKRLHEAYELLQEM----------------------------------- 414

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
                 K    +P   TYN L+   C   D+  V  L+ +M   G  P+ I++  L+   
Sbjct: 415 ------KEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGY 468

Query: 559 GGSGNVEGALQ 569
              G ++ AL+
Sbjct: 469 CKVGKIDEALR 479



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 6/206 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SP+  +  T+I      G    + ++   ++     L+   +N L+        L    E
Sbjct: 350 SPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYE 409

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + + M+++G+  D+ +YN LL   C AG+     E+ G++         +  V T+ T+V
Sbjct: 410 LLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKM----IDDGCQPSVITFGTLV 465

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +        AL++   M  +G+ PN + +++LI+     G V+ A+ LF+EM +    
Sbjct: 466 HGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVP 525

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
            N    N LL+   +    ++AF L 
Sbjct: 526 ANVTTFNALLKGLRDKNMPEKAFELM 551


>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
 gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
 gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
          Length = 634

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 146/353 (41%), Gaps = 23/353 (6%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I +C  +   GK R   S +       K   + +M   +  I      G+   +  ++E 
Sbjct: 229 ITYCKMLHILGKTRQFESMVAMIQEMGK-AGALSMDAFKVAIKSFAAAGEIKNAVGVFEL 287

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDL--KFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R       +  FN L+   A +   +   +V+  M       D+ SY  L+ A C A N
Sbjct: 288 MRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHGQ-YSPDLRSYTALMLAWCNARN 346

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            V A  ++ E+  LE KG +  DV  ++T+++     +    A+K+ E M + G  PN  
Sbjct: 347 LVEAGRVWNEM--LE-KG-MDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVW 402

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++ LI      G ++ AM  FEEM +A C+P+      LL     A Q DR   +    
Sbjct: 403 TYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEM 462

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
           T  K        Y+     ++N    D  +            Y    K+   +PT  TYN
Sbjct: 463 T-QKGCPPDARTYNALIKLLTNRNMPDDAARI----------YKKMIKK-GLEPTIHTYN 510

Query: 520 ILMKACC---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           ++MK+     ++Y    A+  EM   G+ P+  S+T+ I+     G  E A +
Sbjct: 511 MMMKSYFVGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINGHIRHGRPEEAYK 563



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 11/201 (5%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTII-DVCGICGDYMKSRAIYEDLRSQNVTLN 290
           G++R    A++ ++  K     PN++    +I D C   G    +   +E+++      +
Sbjct: 379 GQRRP--EAVKMFELMKAKGPPPNVWTYTMLIRDHCKQ-GKMDMAMECFEEMQEAKCQPD 435

Query: 291 IYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           +  +  L+    NA  +     V + M + G   D  +YN L+K   L  N  +  +   
Sbjct: 436 VATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIK---LLTNRNMPDDAAR 492

Query: 349 EVKHLEAKGVLKLDVFTYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             K +  KG L+  + TY+ ++K  F     + M   V E+M   G+ P+  +++  IN 
Sbjct: 493 IYKKMIKKG-LEPTIHTYNMMMKSYFVGDSNYAMGCAVWEEMHQRGICPDVNSYTVFING 551

Query: 408 CANAGLVEQAMHLFEEMLQAG 428
               G  E+A    EEM+  G
Sbjct: 552 HIRHGRPEEAYKYIEEMINKG 572


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 13/246 (5%)

Query: 218 PRADIL-FCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMK 274
           P  D+  F  FVR F K  +L  A   +D        P+   YI R + ++    GD  K
Sbjct: 408 PDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELK--LGDPSK 465

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILL 331
           +  + E++ ++    ++  +N  ++   H   +LK   E+ K M   G++ D  +Y  ++
Sbjct: 466 AFGMQEEMLARGFPPDLITYNVFID-GLHKLGNLKEASELVKKMLYNGLVPDHVTYTSII 524

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            A  +AG+   A+ ++ E   + +KG+    V TY+ ++  +A     ++A+    +M  
Sbjct: 525 HAHLMAGHLRKARALFLE---MLSKGIFP-SVVTYTVLIHSYAVRGRLKLAILHFFEMHE 580

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            GV PN IT+++LIN       ++QA + F EM   G  PN     IL+        +  
Sbjct: 581 KGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQE 640

Query: 452 AFRLFR 457
           A RL++
Sbjct: 641 ALRLYK 646



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 119/287 (41%), Gaps = 35/287 (12%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L++   MQ +G   +  +YN+L+     +G    A+E+  ++  L     L++ V+TY  
Sbjct: 222 LQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLG----LEVSVYTYDP 277

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +++ + +    + A ++ E+MLS G  P  +T+++++      G V  A  L + M+   
Sbjct: 278 LIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKN 337

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG---NTDRISNM 482
             P+    N L+           AF LF   R  +L+ + V      DG     D    M
Sbjct: 338 LMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAM 397

Query: 483 EHKDKQSITNTPNFVPNSH-YSSFDKRF-------------------SFKPTTTTY--NI 520
             KD + I + P+  P+   +++F + F                     +P    Y   I
Sbjct: 398 RLKD-EMIKHGPD--PDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRI 454

Query: 521 LMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           + +    D  +   +  EM   G  P+ I++ + ID     GN++ A
Sbjct: 455 VGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEA 501



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 134/311 (43%), Gaps = 43/311 (13%)

Query: 286 NVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV-LAQ 344
           ++ L IYV  SL+       K  L  YK + K G++ D+ + N +L+      N + +A+
Sbjct: 135 DLLLWIYVKKSLLE------KCLLVFYKMVSK-GLLPDVKNCNRVLRLLRDRDNNIDVAR 187

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           E+Y  +      G+    V TY+T++  F      Q AL++   M + G +PN +T++ L
Sbjct: 188 EVYNVMVEC---GICP-TVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVL 243

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
           +N  +++G +EQA  L ++ML+ G E +    + L++   E  Q + A RL     LS+ 
Sbjct: 244 VNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEE-MLSRG 302

Query: 465 QVALGEDYDG------NTDRISNMEHKDKQSITNTPNFVPN-----------SHYSSFDK 507
            V     Y+          R+S+   +    +    N +P+           +   +  +
Sbjct: 303 AVPTVVTYNTIMYGLCKWGRVSDA--RKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGE 360

Query: 508 RF---------SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILID 556
            F         S  P+  TYN L+   C   D      L +EM   G  P+  ++T  + 
Sbjct: 361 AFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVR 420

Query: 557 ACGGSGNVEGA 567
                GN+  A
Sbjct: 421 GFCKMGNLPMA 431



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 129/311 (41%), Gaps = 28/311 (9%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----NAHDLKFTLEVYKNMQKLG 319
           G C  G   ++  + E++ S+     +  +N++M          D +  L+V  N     
Sbjct: 281 GYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKN--- 337

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           +M D+ SYN L+      GN   A  ++ E+++      L   V TY+T++         
Sbjct: 338 LMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRS----LAPSVVTYNTLIDGLCRLGDL 393

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
            +A+++K++M+  G  P+  T+++ +      G +  A  LF+EML  G +P+       
Sbjct: 394 DVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITR 453

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
           +   ++     +AF       + +  +A G   D  T  +         ++      V  
Sbjct: 454 IVGELKLGDPSKAF------GMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKK 507

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKA--CCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
             Y+         P   TY  ++ A        + +AL  EM + G+ P+ +++T+LI +
Sbjct: 508 MLYN------GLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHS 561

Query: 558 CGGSGNVEGAL 568
               G ++ A+
Sbjct: 562 YAVRGRLKLAI 572



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 84/177 (47%), Gaps = 7/177 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEV 311
           P+     +II    + G   K+RA++ ++ S+ +  ++  +  L++  A    LK  +  
Sbjct: 515 PDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILH 574

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M + GV  ++ +YN L+   C       A   + E   ++AKG+   + +TY+ ++ 
Sbjct: 575 FFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAE---MQAKGI-SPNKYTYTILIN 630

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
              +   WQ AL++ +DML   + P++ T  SL+        +    HL E ++ AG
Sbjct: 631 ENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNKDYKLHVVRHL-ENVIAAG 686


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 144/323 (44%), Gaps = 35/323 (10%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGV 320
           +CG C  G  +++ A++E++ ++ V+  +   N++M     + K +   +   +M K  +
Sbjct: 314 ICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNL 373

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
           M D+ SYN L+   C  GN   A  +  E++       L  ++ TY+T++         +
Sbjct: 374 MPDIISYNTLIYGFCRLGNIGEAFILLDELRFRN----LSFNIVTYNTLIDGLCRLGDLE 429

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
            ALK+KEDM++ G+ P+ +T++ L+N     G +  A   F+EML  G  P+       +
Sbjct: 430 TALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARI 489

Query: 441 QACVEACQFDRAFRLFRSWTLSK---TQVALGEDYDGNTDRISNMEHKDK--QSITNTPN 495
              ++     +AF+L +   L+K     V     +     ++ N+E   +  Q +    +
Sbjct: 490 VGELKLGDTAKAFKL-QEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGH 548

Query: 496 FVPNSHYSSF-----------DKRFSF--------KPTTTTYNILMKACCTD--YYRVKA 534
              +  Y+SF           + R  F         PT  TY +L+ A   +       A
Sbjct: 549 VPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMA 608

Query: 535 LMNEMRTVGLSPNHISWTILIDA 557
              EM+  G+ PN I++ +LI+ 
Sbjct: 609 YFLEMQEKGVVPNVITYNVLING 631



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 165/410 (40%), Gaps = 91/410 (22%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           + G +   + ++ K+ E G  P E+     F +L N   +    GE++   GL++ + + 
Sbjct: 249 KGGEVQRALDLVPKMQERGCYPSEV----TFNVLINGLSK---KGELQQAKGLIQEMAKA 301

Query: 185 RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA--------DILFCNFVREFGKKRD 236
            L V        I   C     V     +  +V R         + +   F +E GK  D
Sbjct: 302 GLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKE-GKMSD 360

Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVF 294
               L   D  KK+L  P++    T+I   G C  G+  ++  + ++LR +N++ NI  +
Sbjct: 361 ARQQLS--DMLKKNLM-PDIISYNTLI--YGFCRLGNIGEAFILLDELRFRNLSFNIVTY 415

Query: 295 NSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE------- 345
           N+L++      DL+  L++ ++M   G+  D+ +Y +L+   C  GN ++A+E       
Sbjct: 416 NTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLH 475

Query: 346 -------------IYGEVKHLEAKGVLKL-----------DVFTYSTIV----------- 370
                        I GE+K  +     KL           DV TY+  V           
Sbjct: 476 VGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEE 535

Query: 371 ------KVFADAK------------------WWQMALKVKEDMLSAGVTPNTITWSSLIN 406
                 K+  D                      +   ++  DMLS G TP  +T++ LI+
Sbjct: 536 AGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIH 595

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           A A  G ++ AM  F EM + G  PN    N+L+    +  + D+A + F
Sbjct: 596 AHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFF 645



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 10/154 (6%)

Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
           N H L+   E++ +M   G    + +Y +L+ A  L G    A   + E   ++ KGV+ 
Sbjct: 565 NGH-LREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLE---MQEKGVVP 620

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            +V TY+ ++  F   +    A K   +M   G+ PN  T++ LIN   N G  ++A+ L
Sbjct: 621 -NVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRL 679

Query: 421 FEEMLQAGCEPNSQCCNILLQAC-----VEACQF 449
           + +ML     P+S     LL+       V+A QF
Sbjct: 680 YAQMLGKRIRPDSCTHGALLKKLDKDYKVQAVQF 713



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 125/311 (40%), Gaps = 30/311 (9%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++  C  I+ +       +K+  +Y  +    +   +  +N++++      +++  L++
Sbjct: 200 PDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDL 259

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              MQ+ G      ++N+L+      G    A+ +  E+    AK  L++  +TY+ ++ 
Sbjct: 260 VPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEM----AKAGLRVSPYTYNPLIC 315

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            +        AL + E+M++ GV+P   + ++++      G +  A     +ML+    P
Sbjct: 316 GYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMP 375

Query: 432 NSQCCNILLQACVEACQFDRAFRL---FRSWTLSKTQVALGEDYDGNTDRISNMEH--KD 486
           +    N L+           AF L    R   LS   V      DG   R+ ++E   K 
Sbjct: 376 DIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLC-RLGDLETALKL 434

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGL 544
           K+ + N                    P   TY +L+   C   +    K   +EM  VGL
Sbjct: 435 KEDMINR----------------GIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGL 478

Query: 545 SPNHISWTILI 555
           +P+  ++T  I
Sbjct: 479 APDQFAYTARI 489



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 107/265 (40%), Gaps = 53/265 (20%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           LEVY+ M + G+   + +YN +L + C  G    A ++   V  ++ +G    +V T++ 
Sbjct: 222 LEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDL---VPKMQERGCYPSEV-TFNV 277

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++   +     Q A  + ++M  AG+  +  T++ LI      GL+ +A+ L+EEM+  G
Sbjct: 278 LINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRG 337

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
             P     N ++    +  +   A                         ++S+M  K+  
Sbjct: 338 VSPTVASHNTIMYGFCKEGKMSDA-----------------------RQQLSDMLKKN-- 372

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
                                   P   +YN L+   C   +      L++E+R   LS 
Sbjct: 373 ----------------------LMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSF 410

Query: 547 NHISWTILIDACGGSGNVEGALQCR 571
           N +++  LID     G++E AL+ +
Sbjct: 411 NIVTYNTLIDGLCRLGDLETALKLK 435



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 6/189 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD  K+  + E++ ++    ++  +N  +N      +L+   E+ + M + G + D  +Y
Sbjct: 496 GDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTY 555

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
              + A    G+    +EI+ +   + ++G     V TY+ ++   A       A+    
Sbjct: 556 TSFMHAHMENGHLREGREIFYD---MLSRGQTP-TVVTYTVLIHAHALNGRLDWAMAYFL 611

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M   GV PN IT++ LIN       ++QA   F EM + G  PN     IL+       
Sbjct: 612 EMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMG 671

Query: 448 QFDRAFRLF 456
           ++  A RL+
Sbjct: 672 KWQEALRLY 680


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 138/332 (41%), Gaps = 59/332 (17%)

Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN-- 299
           YD   K+   P+++   T+I   G+C   +   A+    D+ +   T N+  + +L++  
Sbjct: 368 YDKMIKNGCRPDVFTFNTLIH--GLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGF 425

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
              + L+    V   M   G   ++  YN+LL+A C  G    A ++ GE   +  KG  
Sbjct: 426 CKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGE---MSDKGC- 481

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
           K D+FT++T++         + AL +  DML  GV  NT+T+++LI+A    G +++A+ 
Sbjct: 482 KPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALK 541

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           L  +ML  GC  +    N L++A  +    ++A  LF                       
Sbjct: 542 LVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLF----------------------- 578

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MN 537
             M  KD                          P+  + N+L+   C       AL  + 
Sbjct: 579 DEMVRKD------------------------LVPSNISCNLLINGLCRVGKVCNALELLR 614

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +M   GL+P+ +++  LI+     GN+  A  
Sbjct: 615 DMIHRGLAPDVVTYNSLINGLCKMGNIREAFN 646



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 141/355 (39%), Gaps = 47/355 (13%)

Query: 219 RADIL-FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R D+  F   +    KK  + SA+   +    +  +PN+    T++D  G C       A
Sbjct: 377 RPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLD--GFCKKNQLEEA 434

Query: 278 IY--EDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKA 333
            Y   ++ ++   LNI  +N L+     + K    L++   M   G   D+ ++N L+  
Sbjct: 435 GYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFG 494

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C       A  +Y   + +   GV+  +  TY+T++  F      Q ALK+  DML  G
Sbjct: 495 LCKVDRKEDALALY---RDMLLDGVIA-NTVTYNTLIHAFLRGGAIQEALKLVNDMLFRG 550

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
              + IT++ LI A    G  E+A+ LF+EM++    P++  CN+L+       +   A 
Sbjct: 551 CPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNAL 610

Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF-- 511
            L R                       +M H+       T N + N      + R +F  
Sbjct: 611 ELLR-----------------------DMIHRGLAPDVVTYNSLINGLCKMGNIREAFNL 647

Query: 512 ---------KPTTTTYNILMKACCTDYYRVKALMNEMRTV--GLSPNHISWTILI 555
                    +P   TYN L+   C       A +  +R V     PN ++W IL+
Sbjct: 648 FNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILV 702



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 113/262 (43%), Gaps = 42/262 (16%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           SYN++L     A    +A  ++ E   + +KGV+   V+T+  ++K          A  +
Sbjct: 175 SYNVVLDILVSANCPSVAANVFYE---MLSKGVIP-TVYTFGVVMKALCMVNEVDNACSL 230

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             DM   G  PN++ + +LI+A +    V +A+ L EEM   GC P+    N ++     
Sbjct: 231 LRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYG--- 287

Query: 446 ACQFDRAFR--------LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN---TP 494
            C+ +R           LFR +T     +  G   +G   R+  ++  + Q + N   TP
Sbjct: 288 LCRLNRIHEGAKLVDRMLFRGFT--PNDITYGVLMNGLC-RVGKVD--EAQVLLNKVPTP 342

Query: 495 NFVP-----NSHYSS--FDKRFSF----------KPTTTTYNILMKACCTDYYRVKA--L 535
           N V      N +  S   D+  +F          +P   T+N L+   C       A  +
Sbjct: 343 NDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDM 402

Query: 536 MNEMRTVGLSPNHISWTILIDA 557
           +N+M   G +PN I++T L+D 
Sbjct: 403 VNDMSANGCTPNLITYTTLLDG 424



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 18/205 (8%)

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+ ++ +   A    +A  V  +MLS GV P   T+  ++ A      V+ A  L  +M
Sbjct: 175 SYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDM 234

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
            + GC PNS     L+ A  +  + + A +L     L    +    D D   D I  +  
Sbjct: 235 TKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFL----MGCLPDVDTFNDVIYGLCR 290

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTV 542
            ++  I      V    +        F P   TY +LM   C        + L+N++ T 
Sbjct: 291 LNR--IHEGAKLVDRMLFR------GFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPT- 341

Query: 543 GLSPNHISWTILIDACGGSGNVEGA 567
              PN + +TILI+    SG ++ A
Sbjct: 342 ---PNDVHFTILINGYVKSGRLDEA 363



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 107/267 (40%), Gaps = 30/267 (11%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +Y  M K G   D+ ++N L+   C  G   L       V  + A G    ++ TY+T++
Sbjct: 367 LYDKMIKNGCRPDVFTFNTLIHGLCKKG---LMGSAVDMVNDMSANGCTP-NLITYTTLL 422

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             F      + A  V  +M + G   N + ++ L+ A    G V +A+ +  EM   GC+
Sbjct: 423 DGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCK 482

Query: 431 PNSQCCNILLQACVEACQFDR---AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK-- 485
           P+    N L+      C+ DR   A  L+R   L             NT   + + H   
Sbjct: 483 PDIFTFNTLIFG---LCKVDRKEDALALYRDMLLDGVI--------ANTVTYNTLIHAFL 531

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKP-TTTTYNILMKACCTDYYRVKA--LMNEMRTV 542
              +I      V        D  F   P    TYN L+KA C      KA  L +EM   
Sbjct: 532 RGGAIQEALKLVN-------DMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRK 584

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
            L P++IS  +LI+     G V  AL+
Sbjct: 585 DLVPSNISCNLLINGLCRVGKVCNALE 611


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 123/273 (45%), Gaps = 22/273 (8%)

Query: 290 NIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           +I+ FN L++  A   KF L +   + MQ+LG+  ++ +YNIL+   C      LA  + 
Sbjct: 9   SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 68

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
           G++  L  +      + T S+++  +   K    A+ + + M+  G  P+TIT+++LI+ 
Sbjct: 69  GKMMKLGYEP----SIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 124

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
                   +A+ L + M+Q GC+PN     +++    +    D AF L      +K +  
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 184

Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
           +   ++   D +    H D     +  N                +P   TY+ L+   C+
Sbjct: 185 V-VIFNTIIDSLCKYRHVD-----DALNLFKEMETK------GIRPNVVTYSSLISCLCS 232

Query: 528 DYYR---VKALMNEMRTVGLSPNHISWTILIDA 557
            Y R      L+++M    ++PN +++  LIDA
Sbjct: 233 -YGRWSDASQLLSDMIEKKINPNLVTFNALIDA 264



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/362 (20%), Positives = 159/362 (43%), Gaps = 27/362 (7%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           ++F   +    K R +  AL  +   +     PN+    ++I      G +  +  +  D
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 245

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  N+  FN+L++    + KF    +++ +M K  +  D+ +YN L+   C+   
Sbjct: 246 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDR 305

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A++++   + + +K     D+ TY+T++K F  +K  +   ++  +M   G+  +T+
Sbjct: 306 LDKAKQMF---EFMVSKDCFP-DLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 361

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+++LI    + G  + A  +F++M+  G  P+    +ILL       + ++A  +F   
Sbjct: 362 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD-- 419

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
            + K+++ L  D    T  I  M    K  + +  +      + S   +   KP   TYN
Sbjct: 420 YMQKSEIKL--DIYIYTTMIEGMCKAGK--VDDGWDL-----FCSLSLK-GVKPNVVTYN 469

Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ-------C 570
            ++   C+        AL+ +M+  G  P+  ++  LI A    G+   + +       C
Sbjct: 470 TMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSC 529

Query: 571 RF 572
           RF
Sbjct: 530 RF 531



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 124/277 (44%), Gaps = 16/277 (5%)

Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
           V N L      DL F L     M+   + AD+  +N ++ + C   +   A  ++   K 
Sbjct: 156 VVNGLCKRGDIDLAFNL--LNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF---KE 210

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           +E KG+ + +V TYS+++        W  A ++  DM+   + PN +T+++LI+A    G
Sbjct: 211 METKGI-RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 269

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
              +A  L ++M++   +P+    N L+       + D+A ++F  + +SK       D 
Sbjct: 270 KFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFE-FMVSKDCFP---DL 325

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRV 532
           D     I     K K+    T  F   SH        ++  TT    +     C +  +V
Sbjct: 326 DTYNTLIKGF-CKSKRVEDGTELFREMSHRGLVGDTVTY--TTLIQGLFHDGDCDNAQKV 382

Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
                +M + G+ P+ ++++IL+D    +G +E AL+
Sbjct: 383 ---FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALE 416



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 110/262 (41%), Gaps = 32/262 (12%)

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           M + G   ++ +Y +++   C  G+  LA   +  +  +EA  + + DV  ++TI+    
Sbjct: 141 MVQRGCQPNLVTYGVVVNGLCKRGDIDLA---FNLLNKMEAAKI-EADVVIFNTIIDSLC 196

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
             +    AL + ++M + G+ PN +T+SSLI+   + G    A  L  +M++    PN  
Sbjct: 197 KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 256

Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
             N L+ A V+  +F  A +L                +D    R  + +     S+ N  
Sbjct: 257 TFNALIDAFVKEGKFVEAEKL----------------HDDMIKRSIDPDIFTYNSLIN-- 298

Query: 495 NFVPNSHYSSFDKRFSFK------PTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLS 545
            F  +       + F F       P   TYN L+K  C    RV+    L  EM   GL 
Sbjct: 299 GFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKS-KRVEDGTELFREMSHRGLV 357

Query: 546 PNHISWTILIDACGGSGNVEGA 567
            + +++T LI      G+ + A
Sbjct: 358 GDTVTYTTLIQGLFHDGDCDNA 379


>gi|302791145|ref|XP_002977339.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
 gi|300154709|gb|EFJ21343.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
          Length = 336

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 90/180 (50%), Gaps = 7/180 (3%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVY 312
           N+    T++    + G+   +  ++ ++  +N+  N+  +NSL++     + +  TL + 
Sbjct: 32  NLATWNTLLTSHSLQGNLTGAIRVFHEMPDKNLP-NMVTYNSLIHGLCMTNGVDSTLLLM 90

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + M   G + D+ +YN L+   C  G    A  ++GE+K   AK     DV TYS ++  
Sbjct: 91  EEMTATGCLPDINTYNTLIDGLCKTGRVPEANRLFGEMK---AK-FCNPDVITYSCLIGG 146

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           F       MA  + +DML     P+ +T+ +L+    NAGLV+ A  L EEM+ + C P+
Sbjct: 147 FCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEMVASDCSPD 206



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 41/218 (18%), Positives = 94/218 (43%), Gaps = 14/218 (6%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           P++    T+ID  G+C  G   ++  ++ +++++    ++  ++ L+        +    
Sbjct: 100 PDINTYNTLID--GLCKTGRVPEANRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMAC 157

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            ++ +M K   + D+ ++  L++  C AG    A+ +  E+   +       DV+TY+++
Sbjct: 158 TLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEMVASDCSP----DVYTYTSL 213

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPN----TITWSSLINACANAGLVEQAMHLFEEML 425
           V  F   K    A +V + M   G   N       +  +++     G +  A+ L E + 
Sbjct: 214 VDDFCKVKRMVEAHRVLKRMAKGGSNKNCKADMFAYRMMMDGLCRTGRMSAALELLEAIK 273

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           Q+G  P       L++   +  +  +A  +    TLS+
Sbjct: 274 QSGTPPRHDIYVALIRGLCQGKELRKAMEVLEEMTLSR 311



 Score = 45.4 bits (106), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 16/133 (12%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEV--KHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
           ++A++N LL +  L GN   A  ++ E+  K+L        ++ TY++++          
Sbjct: 32  NLATWNTLLTSHSLQGNLTGAIRVFHEMPDKNLP-------NMVTYNSLIHGLCMTNGVD 84

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
             L + E+M + G  P+  T+++LI+     G V +A  LF EM    C P     +++ 
Sbjct: 85  STLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEANRLFGEMKAKFCNP-----DVIT 139

Query: 441 QACVEA--CQFDR 451
            +C+    C+ DR
Sbjct: 140 YSCLIGGFCKLDR 152



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 13/178 (7%)

Query: 290 NIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG---NTVLAQ 344
           N+  +N+L+  ++   +L   + V+  M     + +M +YN L+   C+     +T+L  
Sbjct: 32  NLATWNTLLTSHSLQGNLTGAIRVFHEMPDKN-LPNMVTYNSLIHGLCMTNGVDSTLLLM 90

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
           E       + A G L  D+ TY+T++           A ++  +M +    P+ IT+S L
Sbjct: 91  E------EMTATGCLP-DINTYNTLIDGLCKTGRVPEANRLFGEMKAKFCNPDVITYSCL 143

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           I        +  A  LF++ML+    P+      L++    A   D A RL      S
Sbjct: 144 IGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEMVAS 201


>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
          Length = 859

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 138/330 (41%), Gaps = 33/330 (10%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           T+I + G    +   R + +++ S +    +  +N +++    A+ L+  ++V++ MQK 
Sbjct: 371 TMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKA 430

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  +Y  L+      G    A ++Y  ++ +     L  D FTYS +V        
Sbjct: 431 GYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVG----LSPDTFTYSAMVNCLGKGGH 486

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A K+  +M+  G TPN +T++ +I   A A   E  + L+++M  AG  P+    +I
Sbjct: 487 LAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSI 546

Query: 439 LLQACVEACQFDRAFRLF----RSWTLSKTQVALGEDY---DGNTDRISNMEHKDKQSIT 491
           +++        D A  +F      W   +    L  D     GN D+     H   Q   
Sbjct: 547 VMEVLGHCGHLDEAEAVFIEMRHDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGL 606

Query: 492 NTPNFVP--NSHYSSFDKRFSFK---------------PTTTTYNILMKACCTDYYRVKA 534
             PN VP  NS  S+F K   F+               P+  TY +L+ +CCT+      
Sbjct: 607 Q-PN-VPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLL-SCCTEAQAQMG 663

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           L  ++  +   P H+    L DA  G  NV
Sbjct: 664 LCCQLMAITGHPAHMFLLYLPDAEPGGQNV 693



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 130/306 (42%), Gaps = 25/306 (8%)

Query: 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214
           F+ LK +     D       +G++    +F    K LDE   +   C  KP V       
Sbjct: 353 FQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSV--HC--KPTV------- 401

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
                  + +   +  +G+   L  A++ ++  +K    P+     T+ID+    G    
Sbjct: 402 -------VTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEF 454

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +  +Y  ++   ++ + + +++++N       L    +++  M + G   ++ +YNI++ 
Sbjct: 455 AMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIA 514

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
               A N     ++Y   K ++  G  + D  TYS +++V         A  V  +M   
Sbjct: 515 LQAKARNYENVVKLY---KDMQVAG-FRPDKITYSIVMEVLGHCGHLDEAEAVFIEM-RH 569

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
              P+   +  L++    AG V++A+  +  MLQ G +PN   CN LL A ++  +F  A
Sbjct: 570 DWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDA 629

Query: 453 FRLFRS 458
           + + ++
Sbjct: 630 YSVLQN 635



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 140/343 (40%), Gaps = 54/343 (15%)

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN--VTLNIYVFNSLMN 299
           R  +   ++LS+P MY            G   KS+A+   ++S       N+    SL +
Sbjct: 255 RWDEVQTQNLSAPAMYT-----------GSGHKSQALAGTIKSHGGGPQSNLRSLKSLRS 303

Query: 300 VNAHDLKFTLEVYKNMQ--KLGVMADMASYNILLKACCLAGNTVLA-----QEIYGEVKH 352
           V         + Y  +Q  K G M +    N+  K      N VL          G  + 
Sbjct: 304 VE--------QYYHTLQQMKWGPMTEHVLDNLHCKIDAFQANQVLKLLHDHTIALGFFQW 355

Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
           L+ +   K D  +Y+T++ +   A+ +    K+ ++M S    P  +T++ +I+A   A 
Sbjct: 356 LKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRAN 415

Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
            + +A+ +FEEM +AG EP+      L+    +    + A  L+        +V L  D 
Sbjct: 416 YLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLY----TRMQEVGLSPDT 471

Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF------SFKPTTTTYNIL--MKA 524
              +  ++ +                  H ++  K F         P   TYNI+  ++A
Sbjct: 472 FTYSAMVNCLGK--------------GGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQA 517

Query: 525 CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              +Y  V  L  +M+  G  P+ I+++I+++  G  G+++ A
Sbjct: 518 KARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEA 560


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 149/356 (41%), Gaps = 58/356 (16%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYE 280
           +++ + +    K R +  A   +        SP+++   ++I  +C +C ++    A+  
Sbjct: 209 VVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLC-EWKHVTALLN 267

Query: 281 DLRSQNVTLNIYVFNSLMN--------VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           ++ +  +  N+ +F+++++        + AHD      V   M K GV  ++ +YN L+ 
Sbjct: 268 EMVNSKIMPNVVIFSTVVDALCKEGKVMEAHD------VVDMMIKRGVEPNVVTYNALMD 321

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             CL      A +++     +  KG    DV +YST++  +   +  + A+ + E+M   
Sbjct: 322 GHCLRSEMDEAVKVFDT---MVCKGFAP-DVVSYSTLINGYCKIQRIEKAMYLFEEMCRK 377

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            + PNT+T+S+L++   + G ++ A+ LF EM+  G  P+     ILL    +  + D A
Sbjct: 378 ELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEA 437

Query: 453 FRLFRS------------WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
             L ++            +T+    +    + +   D  SN+  K               
Sbjct: 438 IALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSK--------------- 482

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTIL 554
                       P   TY I++   C      +A  L  EM+  G SPN  ++ ++
Sbjct: 483 ---------GLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLI 529



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +++T + ++  F   +    A  V   +L  G  PN  T+++LI      G + + +HLF
Sbjct: 102 NIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLF 161

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
           ++M+  G +PN      L+    +      A RL RS      Q     D    T  I +
Sbjct: 162 DKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQ----PDVVVYTSIIDS 217

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEM 539
           +  KD+Q +T   N      +          P+  TYN L+ A C   ++  V AL+NEM
Sbjct: 218 L-CKDRQ-VTQAFNLFSEMIHQ------GISPSIFTYNSLIHALCNLCEWKHVTALLNEM 269

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
               + PN + ++ ++DA    G V  A
Sbjct: 270 VNSKIMPNVVIFSTVVDALCKEGKVMEA 297



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 134/352 (38%), Gaps = 76/352 (21%)

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNI 329
           Y    ++   + S  +  NIY  N L+N   H   L F   V   + KLG   ++A++N 
Sbjct: 84  YSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNT 143

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAK------------------GVLKL---------- 361
           L++  C+ G         GEV HL  K                  G+ K+          
Sbjct: 144 LIRGLCVEGKI-------GEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLL 196

Query: 362 ----------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
                     DV  Y++I+      +    A  +  +M+  G++P+  T++SLI+A  N 
Sbjct: 197 RSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNL 256

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEA--CQFDRAFRLFRSWTLSKTQVAL 468
              +    L  EM+ +   PN    + ++ A C E    +      +     +    V  
Sbjct: 257 CEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTY 316

Query: 469 GEDYDGNTDRISNMEHKDKQSITNT-PNFVPN-SHYSS-----------------FDK-- 507
               DG+  R S M+   K   T     F P+   YS+                 F++  
Sbjct: 317 NALMDGHCLR-SEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMC 375

Query: 508 RFSFKPTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILID 556
           R    P T TY+ LM   C    R++   AL +EM T G  P+ +S+ IL+D
Sbjct: 376 RKELIPNTVTYSTLMHGLC-HVGRLQDAIALFHEMVTRGQIPDFVSYCILLD 426



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 74/152 (48%), Gaps = 6/152 (3%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A+ + +   N+  +I ++  +++    A +L+   +++ N+   G+  ++ +Y I++   
Sbjct: 439 ALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGL 498

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C  G    A +++GE+K    KG    +  TY+ I + F         +++ ++ML+ G 
Sbjct: 499 CQQGLLAEASKLFGEMKR---KGY-SPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGF 554

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + +  T + L+   ++ GL +    +  E LQ
Sbjct: 555 SADVSTSTVLVEMLSDDGLDQSVKQILSEFLQ 586


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 134/326 (41%), Gaps = 34/326 (10%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P +    T++   G  GD  K  ++  ++R + +  N+ ++NS+++           L V
Sbjct: 327 PTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVV 386

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            K M   G   D  +++ L+   C  G    A+ +  E    E    L  ++ +Y++++ 
Sbjct: 387 LKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWE----LNPNLSSYTSLIH 442

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F       +A  +  +M+  G TP+ +T+ +LI+    AG V +A+ + E+M      P
Sbjct: 443 GFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLP 502

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           ++   N+L+              L +   L   +  + E  + N        H DK   T
Sbjct: 503 DANIYNVLISG------------LCKKKMLPAARNLIEEMLEQNV-------HPDKYVYT 543

Query: 492 N-TPNFVPNSHYSSFDKRFSF------KPTTTTYNILMKACCTDYYRVKAL--MNEMRTV 542
                F+ N       K F F       P    YN ++K  C      +A+  M+ MR V
Sbjct: 544 TLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKV 603

Query: 543 GLSPNHISWTILIDACGGSGNVEGAL 568
           G  P+  ++T LI      GN+ GAL
Sbjct: 604 GRIPDEFTYTTLIGGYAKQGNISGAL 629



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 12/222 (5%)

Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQNVTLNIYVFNSLMN--VN 301
           A+++ L   N+Y     + + G+C   M   +R + E++  QNV  + YV+ +L++  + 
Sbjct: 496 AARQLLPDANIYN----VLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIR 551

Query: 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
              L    ++++ M++ G+  D+  YN ++K  C  G    A E    ++ +   G +  
Sbjct: 552 NESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKV---GRIP- 607

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D FTY+T++  +A       AL +  DM+     PN + +SSLIN     G  + A  LF
Sbjct: 608 DEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLF 667

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
             M   G  PN     IL+ +  +  +  RA   F    L++
Sbjct: 668 GSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQ 709



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 101/264 (38%), Gaps = 29/264 (10%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G + +   YN+L+   C  G+      + GE   +EAKG+L   V TY T++        
Sbjct: 289 GCVPNAVFYNVLIDGYCRRGDVGRGILLLGE---MEAKGLLP-TVVTYGTLMSWLGRKGD 344

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            +    +  +M    + PN   ++S+I+A        QA+ + ++M   GC+P++   + 
Sbjct: 345 LEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFST 404

Query: 439 LLQACVEACQFDRAFRLFRS---WTL-----SKTQVALGEDYDGNTDRISNM--EHKDKQ 488
           L+    +  +   A RL R    W L     S T +  G    G     SN+  E  ++ 
Sbjct: 405 LISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERG 464

Query: 489 SITNTPNFVPNSHYSSFDKRFS-------------FKPTTTTYNILMKACCTDYYRVKA- 534
              +   F    H      + S               P    YN+L+   C       A 
Sbjct: 465 HTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAAR 524

Query: 535 -LMNEMRTVGLSPNHISWTILIDA 557
            L+ EM    + P+   +T LID 
Sbjct: 525 NLIEEMLEQNVHPDKYVYTTLIDG 548


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 120/269 (44%), Gaps = 45/269 (16%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRS 284
           ++ +  +   +  A + ++  KKH   PN+Y    +ID  G C  G+  ++  +Y+++  
Sbjct: 240 YILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMID--GYCKTGNVRQAYGLYKEILV 297

Query: 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
             +  N+ VF +L++    A +L     ++ +M K GV  ++  YN L+   C +GN + 
Sbjct: 298 AELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLE 357

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIV----------------------KVFADAKWW- 379
           A  +  E++ L     L  DVFTY+ ++                      ++F  +  + 
Sbjct: 358 AVGLLSEMESLN----LSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYN 413

Query: 380 ------------QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
                       + AL +  +M ++GV PN IT+S+LI+   N   ++ AM L+ EM   
Sbjct: 414 SLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIK 473

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLF 456
           G  P+      L+ A  +      A RL+
Sbjct: 474 GIVPDVVTYTALIDAHFKEANMKEALRLY 502



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 109/215 (50%), Gaps = 6/215 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           ++F   V  F K R+LV+A   +    K    PN+Y+   +I      G+ +++  +  +
Sbjct: 305 VVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSE 364

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S N++ +++ +  L+N       +     +++ M+   +    A+YN L+   C   N
Sbjct: 365 MESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYN 424

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A ++  E   + A GV + ++ T+ST++  + + +  + A+ +  +M   G+ P+ +
Sbjct: 425 MEQALDLCSE---MTASGV-EPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVV 480

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
           T+++LI+A      +++A+ L+ +ML+AG  PN  
Sbjct: 481 TYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDH 515



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 116/286 (40%), Gaps = 29/286 (10%)

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y+ M   G++ D+  Y +L + C   G     +++  E+  L     +K +V+ Y+  + 
Sbjct: 187 YQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLG----IKPNVYIYTIYIL 242

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                   + A K+ E M   GV PN  T+S++I+     G V QA  L++E+L A   P
Sbjct: 243 DLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLP 302

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL--------GEDYDGN----TDRI 479
           N      L+    +A +   A  LF           L        G    GN       +
Sbjct: 303 NVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLL 362

Query: 480 SNMEHKDKQSITNTPNFVPNS-----HYSSFDKRFS------FKPTTTTYNILMKACCTD 528
           S ME  +      T   + N        +  ++ F         P++ TYN L+   C +
Sbjct: 363 SEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKE 422

Query: 529 YYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
           Y   +A  L +EM   G+ PN I+++ LID      +++ A+   F
Sbjct: 423 YNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYF 468



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 81/185 (43%), Gaps = 14/185 (7%)

Query: 254 PNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLKF 307
           PN+    T+ID  G C   D   +  +Y ++  + +  ++  + +L  ++AH    ++K 
Sbjct: 442 PNIITFSTLID--GYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTAL--IDAHFKEANMKE 497

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            L +Y +M + G+  +  ++  L+      G   +A + Y E     +      +   ++
Sbjct: 498 ALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSC----WNHVGFT 553

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            +++      +   A +   DM S G+TP+  ++ S++        +   M L  +M++ 
Sbjct: 554 CLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKT 613

Query: 428 GCEPN 432
           G  PN
Sbjct: 614 GILPN 618


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 145/329 (44%), Gaps = 41/329 (12%)

Query: 251 LSSPNMYICRTIIDVCGIC-----GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAH 303
           +S+ N+YI        G+C     GD   ++ +++ +R      N   +N+L++   N  
Sbjct: 50  ISTFNIYIS-------GLCRASRIGD---AQTVFDGMRKHGFWPNRITYNALLSGLCNGG 99

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY-GEVKHLEAKGVLKLD 362
            +     +Y+ M K G   D+ +YN LL   C  G    A +I+ G VK    +G +  D
Sbjct: 100 RMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVK----RGFVP-D 154

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V TY+ ++  F  A     A ++ + M+S  + P+ +T++SL+N     G V++A  L  
Sbjct: 155 VVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARML-- 212

Query: 423 EMLQAGCEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            ++  G  PN    + L+   C E  + + A +L     L+  +     D       I  
Sbjct: 213 -IVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCK----PDIVSYNALIHG 267

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEM 539
           +    +Q ++       +        R  ++P   TYNIL+     +    +A  L + +
Sbjct: 268 LAR--EQGVSEALKLFGSVL------RQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL 319

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGAL 568
              GL P+ I++T+ ID    +G VE AL
Sbjct: 320 VKHGLEPDAITYTVFIDGLCKAGRVEDAL 348



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 103/212 (48%), Gaps = 13/212 (6%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----NAHDL 305
           SPN     T+I  CG C  G + K+   ++++  + V   +  +N L++          +
Sbjct: 395 SPNAISFNTLI--CGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRI 452

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           K  + ++  M + G + D+ +Y+ L+     AG    A+ + G    +EAKG +  +V+T
Sbjct: 453 KEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGA---MEAKGCIP-NVYT 508

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y++++           AL++   M+  G  P+TIT+ ++I+A     +V++A+ LF+  L
Sbjct: 509 YNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSL 568

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           +AG  P S     L+       + D A +L +
Sbjct: 569 EAGVVPTSGMYFSLIDGLCAVARVDEALKLLQ 600



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 3/185 (1%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           ++  +   + ++  + N   FN+L+     A   K  +  +K M K GV   + +YNIL+
Sbjct: 381 EAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILV 440

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C A      +E       +  KG +  DV TYS ++     A     A ++   M +
Sbjct: 441 DGLCKARQEGRIKEAITLFDAMIEKGRVP-DVVTYSALIDGLGKAGKLDDARRLLGAMEA 499

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G  PN  T++SLI+       V++A+ LF  M++ GC P++     ++ A  +    D+
Sbjct: 500 KGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDK 559

Query: 452 AFRLF 456
           A  LF
Sbjct: 560 ALALF 564



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 132/326 (40%), Gaps = 65/326 (19%)

Query: 253 SPNMYICRTIIDVCGICGDYMK---SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT- 308
           SPN+    T+I   G+C +  +   +R + E +       +I  +N+L++  A +   + 
Sbjct: 219 SPNVITYSTLIS--GLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSE 276

Query: 309 -LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY-GEVKHLEAKGVLKLDVFTY 366
            L+++ ++ + G   ++ +YNIL+           A E++ G VKH      L+ D  TY
Sbjct: 277 ALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKH-----GLEPDAITY 331

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +  +     A   + AL + +DM   G  P+ ++ +++IN       V++A  L   M  
Sbjct: 332 TVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEA 391

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
            GC PN+   N L+     A ++ +A   F+                             
Sbjct: 392 KGCSPNAISFNTLICGQCRAGKWKKAMTTFKEML-------------------------- 425

Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVK---ALMNEMRT 541
                               KR   KPT  TYNIL+   C      R+K    L + M  
Sbjct: 426 --------------------KR-GVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIE 464

Query: 542 VGLSPNHISWTILIDACGGSGNVEGA 567
            G  P+ ++++ LID  G +G ++ A
Sbjct: 465 KGRVPDVVTYSALIDGLGKAGKLDDA 490



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 118/327 (36%), Gaps = 64/327 (19%)

Query: 250 HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV----TLNIYVFNSLMNVNAHDL 305
            + SP+ Y    ++      G   K+    E L  + +    T NIY+          D 
Sbjct: 10  RIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGLCRASRIGDA 69

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           +    V+  M+K G   +  +YN LL   C  G    AQ +Y  +     K     DV T
Sbjct: 70  Q---TVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERM----IKAGYSPDVVT 122

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+T++  F        ALK+ +  +  G  P+ +T+++LIN    A  +++A  + + M+
Sbjct: 123 YNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMV 182

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
                P+    N L+    +  + D A  L                              
Sbjct: 183 SESLVPDVVTYNSLVNGLCKNGRVDEARMLI----------------------------- 213

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA---LMNEMRTV 542
                               DK FS  P   TY+ L+   C +  R+++   L+ +M   
Sbjct: 214 -------------------VDKGFS--PNVITYSTLISGLCRELRRLESARQLLEKMVLN 252

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
           G  P+ +S+  LI        V  AL+
Sbjct: 253 GCKPDIVSYNALIHGLAREQGVSEALK 279


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 117/260 (45%), Gaps = 33/260 (12%)

Query: 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288
           R  GK   LV AL       +    P+     T+ D  G C     SRA+  D+  Q V 
Sbjct: 190 RHAGKAASLVRAL-------ERRFPPDAVTYNTLAD--GWCRVKDTSRAL--DILRQMVE 238

Query: 289 LNIYVFNSLMNV------NAHDLKFTLEVYKNMQKLG-----VMADMASYNILLKACCLA 337
             I    +  N+       +  L+   + +  M+K G        D+ SY  +L    +A
Sbjct: 239 SGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVA 298

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G    A++++ E+    ++      + TY+ +++V       + A+ V +DM+  G  PN
Sbjct: 299 GQLDKARKVFDEM----SREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPN 354

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            +T++ LI    +AG +++AM L ++M + GCEPN Q  N+L+    E    ++A  LF 
Sbjct: 355 VVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFE 414

Query: 458 SWTLSKTQVALGEDYDGNTD 477
             T+SK     GE+   N D
Sbjct: 415 --TMSK-----GEECLPNQD 427


>gi|226530981|ref|NP_001141613.1| uncharacterized protein LOC100273731 [Zea mays]
 gi|194705268|gb|ACF86718.1| unknown [Zea mays]
 gi|414870824|tpg|DAA49381.1| TPA: hypothetical protein ZEAMMB73_722490 [Zea mays]
          Length = 504

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 119/267 (44%), Gaps = 28/267 (10%)

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE-------VYKNMQKLGVMADMA 325
           ++ R +   +RS   T N   F +  N   + L  T+E       V++ M   G   D+ 
Sbjct: 229 LRRRLVERFIRSS--TFNYRPFRNAFNAILYTL-LTIEQYSLIEWVHEKMILEGYSPDVL 285

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +YN++L+A  + G      ++  E+     K  L  D+ TY+ ++ V         AL +
Sbjct: 286 TYNVVLRAKYMLGKLDQFHQLLDEM----GKNGLTPDLHTYNLLLHVLGKGDKPLAALNL 341

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
              M   G  PN + +++LI+    AG +E   + F+EM++ GC+P+  C  +++ + V 
Sbjct: 342 LNYMSDVGCRPNVLHFTNLIDGLGRAGNLEACRYFFDEMMKKGCDPDVVCYTVMIASYVA 401

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYD---------GNTDRISNMEHKDKQSITNTPNF 496
           A +F+ A R F    L + Q+     Y+         G  D+   M  KD  S   TPNF
Sbjct: 402 AGEFEEAQRFFDD-MLMRGQLPNVYTYNSMIQGLCAVGEFDKAFTM-LKDMDSHGCTPNF 459

Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMK 523
              S YSS  +R       T  N ++K
Sbjct: 460 ---SVYSSLVRRLRNAGKDTQANNVIK 483



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 6/186 (3%)

Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NA 302
           D   K+  +P+++    ++ V G     + +  +   +       N+  F +L++    A
Sbjct: 308 DEMGKNGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCRPNVLHFTNLIDGLGRA 367

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
            +L+     +  M K G   D+  Y +++ +   AG    AQ  + +   +  +G L  +
Sbjct: 368 GNLEACRYFFDEMMKKGCDPDVVCYTVMIASYVAAGEFEEAQRFFDD---MLMRGQLP-N 423

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V+TY+++++       +  A  + +DM S G TPN   +SSL+    NAG   QA ++ +
Sbjct: 424 VYTYNSMIQGLCAVGEFDKAFTMLKDMDSHGCTPNFSVYSSLVRRLRNAGKDTQANNVIK 483

Query: 423 EMLQAG 428
            M   G
Sbjct: 484 YMTDKG 489



 Score = 38.5 bits (88), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 219 RADIL-FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSR 276
           R ++L F N +   G+  +L +    +D   K    P++ +C T++    +  G++ +++
Sbjct: 351 RPNVLHFTNLIDGLGRAGNLEACRYFFDEMMKKGCDPDV-VCYTVMIASYVAAGEFEEAQ 409

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
             ++D+  +    N+Y +NS++     V   D  FT+   K+M   G   + + Y+ L++
Sbjct: 410 RFFDDMLMRGQLPNVYTYNSMIQGLCAVGEFDKAFTM--LKDMDSHGCTPNFSVYSSLVR 467

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKG 357
               AG    A  +   +K++  KG
Sbjct: 468 RLRNAGKDTQANNV---IKYMTDKG 489


>gi|255661190|gb|ACU25764.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 426

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 124/252 (49%), Gaps = 6/252 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   SP++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFSPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  V  N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVMPNTVSYSTLLTMYVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWSKIGKLDRAAM 275

Query: 455 LFRSWTLSKTQV 466
           LF+    S  ++
Sbjct: 276 LFQKLRSSGVEI 287



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 94/208 (45%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGV PNT+++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVENKKFLEALTVF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           ++ G+ PN I+++ +I      G ++ A
Sbjct: 246 QSRGIEPNSITYSTIISIWSKIGKLDRA 273



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/231 (19%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +R A ++P   + +   +  + + +  + AL  +   ++     ++  C  +IDV G  G
Sbjct: 105 MRTAGVMPNT-VSYSTLLTMYVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLG 163

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN 328
              ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ+  +  ++ +YN
Sbjct: 164 MAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYN 223

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            ++    + G T+  ++    ++ ++++G+ + +  TYSTI+ +++       A  + + 
Sbjct: 224 SMM---MIYGKTLEHEKANNLIQEMQSRGI-EPNSITYSTIISIWSKIGKLDRAAMLFQK 279

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           + S+GV  + + + ++I A   AGLV  A  L  E+ +    P     +IL
Sbjct: 280 LRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHIL 330


>gi|356507117|ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61400-like [Glycine max]
          Length = 498

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 142/353 (40%), Gaps = 63/353 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +PN+Y  +T++D   + GD  +   +Y D+    +  ++  F +L++V     DLK    
Sbjct: 97  TPNLYTYKTLMDGYSMMGDVKRVFYLYCDMLKPGLYPDVVTFATLIDVLRKMGDLKAAXN 156

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            +  M K  V+ +  +YN L+   C AG+ + A  +  E   +E  G+   DV TY+ ++
Sbjct: 157 CFAYMAKFDVVPNGHAYNSLIHGYCKAGDLLEAMWLRLE---MERCGIFS-DVVTYNILI 212

Query: 371 K----------------------VFADAKWWQM-------------ALKVKEDMLSAGVT 395
           K                      VFA++  + +             A++V   M    + 
Sbjct: 213 KGLCDICRLEEAMGLMEKMDEVEVFANSVXFNVVIDGCCKIGDMEKAIEVCSQMTEEXIE 272

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN IT+S LI+   N G V  AM L+ EM+  G  P+      L+    +      AFRL
Sbjct: 273 PNVITFSILIDGFCNKGNVRAAMGLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRL 332

Query: 456 FRSW--------TLSKTQVALGEDYDGNT-DRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
            +            + + V  G   DG T D I       K  +  T    P       D
Sbjct: 333 HKEMLDAGLSPNMFTVSCVIDGLLKDGRTNDAI-------KMFLEKTGAGYPG---DKMD 382

Query: 507 KRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
            RF   P +  Y IL++  C D   ++      EM+  G  P+ + +  ++ A
Sbjct: 383 SRFC-SPNSMMYAILIQGLCEDGXIFKATKFFAEMKWNGFKPDMLVYVTMLQA 434



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 132/323 (40%), Gaps = 33/323 (10%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312
           SP +     +++ C   GD+  ++ +++++  + +  N+ ++  +             V+
Sbjct: 36  SPTVITYGILMNCCCAQGDFSNAQKVFDEMLERGIEPNVVIYGQMGEAEG--------VF 87

Query: 313 KNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
             M++ GV+  ++ +Y  L+    + G+      +Y ++     K  L  DV T++T++ 
Sbjct: 88  GRMRESGVVTPNLYTYKTLMDGYSMMGDVKRVFYLYCDM----LKPGLYPDVVTFATLID 143

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           V       + A      M    V PN   ++SLI+    AG + +AM L  EM + G   
Sbjct: 144 VLRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYCKAGDLLEAMWLRLEMERCGIFS 203

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSW---TLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           +    NIL++   + C+ + A  L        +    V      DG   +I +ME   + 
Sbjct: 204 DVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANSVXFNVVIDGCC-KIGDMEKAIEV 262

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
               T   +              +P   T++IL+   C   +      L  EM   G+ P
Sbjct: 263 CSQMTEEXI--------------EPNVITFSILIDGFCNKGNVRAAMGLYTEMVIKGIVP 308

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
           + +++T LID     GN + A +
Sbjct: 309 DVVTYTALIDGHCKVGNTKEAFR 331



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 113/283 (39%), Gaps = 36/283 (12%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE---------------IYGEVKHLE 354
           EVY +M        + +Y IL+  CC  G+   AQ+               IYG++   E
Sbjct: 25  EVYVDMMSRRFSPTVITYGILMNCCCAQGDFSNAQKVFDEMLERGIEPNVVIYGQMGEAE 84

Query: 355 A-------KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
                    GV+  +++TY T++  ++     +    +  DML  G+ P+ +T+++LI+ 
Sbjct: 85  GVFGRMRESGVVTPNLYTYKTLMDGYSMMGDVKRVFYLYCDMLKPGLYPDVVTFATLIDV 144

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
               G ++ A + F  M +    PN    N L+        + +A  L  +  L      
Sbjct: 145 LRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHG------YCKAGDLLEAMWLRLEMER 198

Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
            G   D  T  I      D   +      +        D+   F   +  +N+++  CC 
Sbjct: 199 CGIFSDVVTYNILIKGLCDICRLEEAMGLM-----EKMDEVEVFA-NSVXFNVVIDGCCK 252

Query: 528 --DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             D  +   + ++M    + PN I+++ILID     GNV  A+
Sbjct: 253 IGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAM 295


>gi|357512797|ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355520709|gb|AET01163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 501

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 121/263 (46%), Gaps = 36/263 (13%)

Query: 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTI 262
           +K  V+LA+R  C   R D              D V  ++  + S KH S P++Y    +
Sbjct: 162 DKGTVDLAVRSLCTADRVD--------------DAVELIK--ELSSKHCS-PDIYSYNFL 204

Query: 263 IDVCGICGDYMKSR------AIYEDLRSQ-NVTLNIYVFNSLMN--VNAHDLKFTLEVYK 313
           +    +C    KSR      A  +++R++ +V  N+  +  L++   N  +L+    +  
Sbjct: 205 VK--NLC----KSRTLSLVYAFIDEMRTKFDVKPNLVTYTILIDNVCNTKNLREATRLVD 258

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
            +++ G   D   YN ++K  C+      A E+Y  +K    KGV + D+ TY+T++   
Sbjct: 259 ILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKE---KGV-EPDLITYNTLIFGL 314

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           + +     A K+   M   G  P+ +T++SL+N     G    A+ L EEM   GC PN+
Sbjct: 315 SKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNT 374

Query: 434 QCCNILLQACVEACQFDRAFRLF 456
              N LL    ++  FD+A  L+
Sbjct: 375 CTYNTLLHGLCKSRMFDKAMELY 397



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 21/200 (10%)

Query: 375 DAKWWQMAL--KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           D+K+  ++L  +    M+S G++P+  T    + +   A  V+ A+ L +E+    C P+
Sbjct: 138 DSKYSTLSLIHQTLNLMVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPD 197

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE---DYDGNTDRISNMEHKDKQS 489
               N L++             L +S TLS     + E    +D   + ++     D  +
Sbjct: 198 IYSYNFLVK------------NLCKSRTLSLVYAFIDEMRTKFDVKPNLVTYTILID--N 243

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPN 547
           + NT N    +      +   FKP    YN +MK  C      +A+   N M+  G+ P+
Sbjct: 244 VCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPD 303

Query: 548 HISWTILIDACGGSGNVEGA 567
            I++  LI     SG V  A
Sbjct: 304 LITYNTLIFGLSKSGRVSEA 323


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 117/282 (41%), Gaps = 63/282 (22%)

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGN 339
           +R Q V +N+  F  +M   A   K    VY    M+K GV+ ++A++N LL A C + N
Sbjct: 128 MRRQGV-VNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLCALCKSKN 186

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              AQEI+ ++      G    D  TYS +++ +  A       KV  DML AG  P+ +
Sbjct: 187 VRKAQEIFEQMN-----GRFSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIV 241

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+  ++++    G VE+A+ + ++M   GC+P +   ++L+       + + A   F   
Sbjct: 242 TYGIMVDSLCKTGRVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATF--- 298

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
                        D   D I                                 P    YN
Sbjct: 299 ------------LDMQKDGIV--------------------------------PDVVVYN 314

Query: 520 ILMKACCT-----DYYRVKALMNEMRTVGLSPNHISWTILID 556
            L+ A C      + +RV   M++M   G++PN  +W I+++
Sbjct: 315 ALVTAFCKVKKFDNAFRV---MDDMEGHGITPNSRTWNIILN 353



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/276 (19%), Positives = 126/276 (45%), Gaps = 41/276 (14%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYED 281
           F   +R++ + + +  A+  ++  +K+   PN+    +++  C +C   +  K++ I+E 
Sbjct: 139 FGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLL--CALCKSKNVRKAQEIFEQ 196

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  +  + +   ++ L+     A +L    +VY +M   G   D+ +Y I++ + C  G 
Sbjct: 197 MNGR-FSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKTGR 255

Query: 340 T----VLAQE-----------IYGEVKH-----------------LEAKGVLKLDVFTYS 367
                 + Q+           IY  + H                 ++  G++  DV  Y+
Sbjct: 256 VEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVP-DVVVYN 314

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            +V  F   K +  A +V +DM   G+TPN+ TW+ ++N   + G  ++A  +F  M++ 
Sbjct: 315 ALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIKR 374

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
            C+P+S    ++++   E  + + A ++++   L +
Sbjct: 375 -CQPDSDTYTMMIKMFCENDRLEMALKVWKYMRLKQ 409



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 9/192 (4%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
            P  +I   ++   G+      + A + D++   +  ++ V+N+L+       KF     
Sbjct: 272 QPTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNALVTAFCKVKKFDNAFR 331

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE-VKHLEAKGVLKLDVFTYSTI 369
           V  +M+  G+  +  ++NI+L      G    A  ++   +K  +       D  TY+ +
Sbjct: 332 VMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIKRCQP------DSDTYTMM 385

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +K+F +    +MALKV + M      P+  T+S LIN   + G V QA  L E+M++ G 
Sbjct: 386 IKMFCENDRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGI 445

Query: 430 EPNSQCCNILLQ 441
            P       L Q
Sbjct: 446 RPPGSTFGKLRQ 457


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 114/245 (46%), Gaps = 6/245 (2%)

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
           +F  F   + K   +  A+  ++  ++H  SP+      +ID     G    +   +  +
Sbjct: 32  IFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVKFNQM 91

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
            ++ VT NI VF+SL+    +    +   E++  M  +G+  ++  +N +L   C  G  
Sbjct: 92  INEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRV 151

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
           +  Q +   V  +E  GV + DV +Y+T++     A     A K+ E M+S G+ PN+ +
Sbjct: 152 MEGQRL---VDSIECMGV-RPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFS 207

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +++L++    AG ++ A  LF +ML  G  P     N +L    +  +F  A  L+ +  
Sbjct: 208 YNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMI 267

Query: 461 LSKTQ 465
            S T+
Sbjct: 268 NSGTK 272



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 100/242 (41%), Gaps = 41/242 (16%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE- 310
           PN+    TI+  C +C  G  M+ + + + +    V  ++  +N+L  ++ H L  T++ 
Sbjct: 133 PNIVFFNTIL--CNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTL--IDGHCLAGTIDE 188

Query: 311 ---VYKNMQKLGVMADMASYNILLKACCLAG------------------------NTVL- 342
              + + M  +G+  +  SYN LL   C AG                        NT+L 
Sbjct: 189 ASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILH 248

Query: 343 ---AQEIYGEVKHLEAKGV---LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
                + + E K L    +    K  ++TY+TI+     +     A K+ + + S G+  
Sbjct: 249 GLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQL 308

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N IT++ +I A    G  E AM LF  +   G  P+     ++ +  +E    +    LF
Sbjct: 309 NIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLF 368

Query: 457 RS 458
            +
Sbjct: 369 SA 370



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 27/172 (15%)

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWT 460
           +++   N G + +   L   M+  G  PN    NI   A  +    D+A  +F   R   
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 461 LSKTQVALGEDYDG--NTDRISNMEHKDKQSITN--TPNFVPNSHYSSFDKRFSFKPTTT 516
           LS   V+ G   D      R+ + E K  Q I    TPN V  S                
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFS---------------- 104

Query: 517 TYNILMKACCTDYY-RVKALMNEMRTVGLSPNHISW-TILIDACGGSGNVEG 566
             +++   C  D + +V+ L  EM  VG+ PN + + TIL + C     +EG
Sbjct: 105 --SLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEG 154


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 125/319 (39%), Gaps = 25/319 (7%)

Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNM 315
           + R ++   G  G   ++  +  ++RS  + L +   N ++ V      F    +V+  M
Sbjct: 105 VMRGMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGM 164

Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
            + GV  D  S+  L+  CC  G     +E+   +  +   G   LD  T + +V+   +
Sbjct: 165 TRAGVCPDERSFRALVVVCCREGKV---EEVDALLAAMWRYG-FSLDNATCTVVVRSLCE 220

Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
              ++   +    ML  G  PN + +++ I+       V+QA H+ EEM+  G +PN   
Sbjct: 221 KGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYT 280

Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD---GNTDRISNMEHKDKQSITN 492
              L+    +    +RAFRLF     S +       Y    G   R   +   +   +  
Sbjct: 281 HTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRM 340

Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHIS 550
                              KP T TY  L+   C    + R   LMN+M+  G  PN  +
Sbjct: 341 VEQ--------------GLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYT 386

Query: 551 WTILIDACGGSGNVEGALQ 569
           +  +ID     G ++ A +
Sbjct: 387 YNAVIDGFCKKGKIQEAYK 405



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 84/411 (20%), Positives = 158/411 (38%), Gaps = 31/411 (7%)

Query: 66  DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKF--ASMLSLEMVASGIVKS 123
           DL      Y   A+     G L     ++  +V + G   +   A+ + LEM + G+   
Sbjct: 78  DLRRLMRLYVTAATAFVARGSLPMAHEVMRGMVAAFGEAGRLPEAADMVLEMRSHGLPLC 137

Query: 124 IREGRIDCVVG-----------VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
           +        VG           V   +   GV P    D   F+ L   C R    G+VE
Sbjct: 138 VETANWVLRVGLETGSFVYARKVFDGMTRAGVCP----DERSFRALVVVCCR---EGKVE 190

Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK--PDVNLAIRYACIV--PRADILFCNFV 228
               L+  +  +   +        +  LC      DV+   R    +  P   + +  ++
Sbjct: 191 EVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWI 250

Query: 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNV 287
               K+R +  A    +        PN+Y   T+ID +C I       R   + ++S + 
Sbjct: 251 DGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSY 310

Query: 288 TLNIYVFNSLMNVNAHDLKFTLE--VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
             N++ +  ++     + K      +   M + G+  +  +Y  L+   C  G+   A E
Sbjct: 311 KPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFE 370

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           +  ++K    +G L  +++TY+ ++  F      Q A KV     S G+  + IT++ LI
Sbjct: 371 LMNKMKQ---EGFLP-NIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILI 426

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
                 G +  A+ LF+ M++ GC P+ +    L+    +  Q + + + F
Sbjct: 427 TEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFF 477



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 14/196 (7%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311
           PN     T+I   G C  G + ++  +   ++ +    NIY +N++++      K   E 
Sbjct: 347 PNTNTYTTLIG--GHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQ-EA 403

Query: 312 YKNMQ---KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           YK ++     G+  D  +Y IL+   C  G+   A +++     +   G    D+  Y++
Sbjct: 404 YKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLF---DRMVENGCCP-DIEAYTS 459

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  +   +  + + K  +  L  G+ P   T++S+I      G    A+ +FE M+Q G
Sbjct: 460 LISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQNG 519

Query: 429 CEPNS--QCCNILLQA 442
           C  +S   C N ++ A
Sbjct: 520 CFADSILMCSNNVVSA 535



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 10/207 (4%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TL 309
           PN++    +I   G C  G   ++  +   +  Q +  N   + +L+  +     F    
Sbjct: 312 PNVHTYTVMIG--GYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAF 369

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+   M++ G + ++ +YN ++   C  G     QE Y  ++   ++G LK D  TY+ +
Sbjct: 370 ELMNKMKQEGFLPNIYTYNAVIDGFCKKGKI---QEAYKVLRMATSQG-LKFDKITYTIL 425

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           AL + + M+  G  P+   ++SLI+       +E++   F++ L  G 
Sbjct: 426 ITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGL 485

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF 456
            P  Q    ++    +  +   A R+F
Sbjct: 486 LPTKQTYTSMIAGYCKVGRSTMALRVF 512


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 94/181 (51%), Gaps = 9/181 (4%)

Query: 253 SPNMYICRTIIDVCGICGDYM---KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKF 307
           +P++Y    +ID  G  G      ++ +++E+++ +N+  +I  +NSL++     H L+ 
Sbjct: 265 NPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLER 324

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            + + K M++ G+  D+ SY ILL   C  G   +A+E +   +HL  KG   L+V+ Y+
Sbjct: 325 AIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFF---QHLLVKGC-HLNVWPYN 380

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            ++     A  +  A+ +K  M   G  PN IT+ ++I A +     ++A  +  EM+  
Sbjct: 381 VMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMIAR 440

Query: 428 G 428
           G
Sbjct: 441 G 441



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 124/310 (40%), Gaps = 47/310 (15%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKAC 334
           ++++      +T ++   + L+N   H    TL   V+ N+ K G   D  + N L+K  
Sbjct: 79  SLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGL 138

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C  G        + +V    A+G  +LD  +Y T++     A   +   ++   +    V
Sbjct: 139 CFRGEIKKTLYFHDQV---VAQG-FQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSV 194

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P+ + ++++IN+     L+  A  ++ EM+  G  P+      L+       +   AF 
Sbjct: 195 KPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFS 254

Query: 455 LFRS----------WTLSKTQVALGED-----YDGNTDRISNMEHKDKQSITNTPNFVPN 499
           L             +T S    ALG++      D        M+HK         N +P+
Sbjct: 255 LLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHK---------NMIPD 305

Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDA 557
                            TYN L+   C +++  R  AL+ EM+  G+ P+  S+TIL+D 
Sbjct: 306 ---------------IVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDG 350

Query: 558 CGGSGNVEGA 567
               G +E A
Sbjct: 351 LCKGGRLEIA 360



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 103/210 (49%), Gaps = 9/210 (4%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF----- 307
           SP++    T+I    I G   ++ ++  +++ +N+  ++Y F+ L++    + K      
Sbjct: 230 SPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDE 289

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            + +++ M+   ++ D+ +YN L+   C   N  L + I   +K ++  G+ + DV++Y+
Sbjct: 290 AMSLFEEMKHKNMIPDIVTYNSLIDGLC--KNHHLERAI-ALLKEMKEHGI-QPDVYSYT 345

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            ++         ++A +  + +L  G   N   ++ +IN    AGL  +AM L  +M   
Sbjct: 346 ILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGK 405

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           GC PN+     ++ A  E  + D+A ++ R
Sbjct: 406 GCMPNAITFRTIICALSEKDENDKAEKILR 435



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/228 (17%), Positives = 104/228 (45%), Gaps = 10/228 (4%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTL 289
           G+ + +   LR  +    H   P++ +  TII+   +C + +   A  +Y ++  + ++ 
Sbjct: 177 GETKAVARLLRKLEG---HSVKPDVVMYNTIIN--SLCKNKLLGDACDVYSEMIVKGISP 231

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           ++  + +L++       +K    +   M+   +  D+ ++++L+ A    G   +  E  
Sbjct: 232 DVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAM 291

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
              + ++ K ++  D+ TY++++         + A+ + ++M   G+ P+  +++ L++ 
Sbjct: 292 SLFEEMKHKNMIP-DIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDG 350

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
               G +E A   F+ +L  GC  N    N+++    +A  F  A  L
Sbjct: 351 LCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDL 398


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 134/304 (44%), Gaps = 38/304 (12%)

Query: 270 GDYMKSR-----AIYEDLRSQNVTLNIYVFNSLM------NVNAHDLKFTLEVYKNMQKL 318
           G +M  R     A  +D+R  + ++    +N ++      N +A+ L+  +E +K M+  
Sbjct: 111 GFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKAS 170

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           GV  D+ SY+ILL A   +G    A  ++  +           D+ TY+ ++  +     
Sbjct: 171 GVEPDLESYHILLSALSDSGRMAEAHALFSAM-------TCSPDIMTYNVLMDGYCKIGQ 223

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A  + +++L AG  PN  T+S +IN       VE+A  +F +M+++ C PN+   N 
Sbjct: 224 TYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNT 283

Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP 498
           L+    +A   + A +LF        +  +   Y+   D +     K +  +    +   
Sbjct: 284 LIAGFCKAGMLEDAIKLFAEMEKIGCKATI-VTYNTLIDSLC----KKRGGVYTAVDL-- 336

Query: 499 NSHYSSFDK--RFSFKPTTTTYNILMKACCTDYYRVKALM---NEMRTVGLSPNHISWTI 553
                 F+K       PT  TYN L++  C D  R+   M   +EM     +PN I+++I
Sbjct: 337 ------FNKLEGAGLTPTIVTYNSLIQGFC-DARRLSEAMQYFDEMEG-KCAPNVITYSI 388

Query: 554 LIDA 557
           LID 
Sbjct: 389 LIDG 392



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 128/310 (41%), Gaps = 39/310 (12%)

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           MK+  +  DL S ++ L+    +  M   AH L            +    D+ +YN+L+ 
Sbjct: 167 MKASGVEPDLESYHILLSALSDSGRM-AEAHAL---------FSAMTCSPDIMTYNVLMD 216

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G T  AQ +  E+     K   + +VFTYS I+  +      + A +V   M+ +
Sbjct: 217 GYCKIGQTYEAQSLMKEI----LKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIES 272

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDR 451
              PN +T+++LI     AG++E A+ LF EM + GC+      N L+ + C +      
Sbjct: 273 NCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYT 332

Query: 452 AFRLF---RSWTLSKTQVALGEDYDGNTD--RISN-MEHKDKQSITNTPNFVPNS----- 500
           A  LF       L+ T V       G  D  R+S  M++ D+      PN +  S     
Sbjct: 333 AVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSILIDG 392

Query: 501 ---------HYSSFD--KRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPN 547
                       + +  K   + PT  TY  L+   C       AL+   +M+  G +PN
Sbjct: 393 LCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPN 452

Query: 548 HISWTILIDA 557
            + +  LID 
Sbjct: 453 TVIFNTLIDG 462



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 12/208 (5%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNV---NAHDLKFT 308
           PN     T+I   G C   M   AI  + ++        I  +N+L++        +   
Sbjct: 276 PNAVTFNTLI--AGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTA 333

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           ++++  ++  G+   + +YN L++  C A     A + + E++     G    +V TYS 
Sbjct: 334 VDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEME-----GKCAPNVITYSI 388

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++      +  + A K  EDM + G TP  +T+  LIN     G ++ A+  FE+M  AG
Sbjct: 389 LIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAG 448

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
           C PN+   N L+    +A + +   RL 
Sbjct: 449 CAPNTVIFNTLIDGLCKAERANDGLRLL 476



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 30/228 (13%)

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G+   +  TY+ +++ F        A+ V  DM S+G+ PN  T ++L+      G +  
Sbjct: 26  GLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSS 85

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG------- 469
           A+ LF EM      P S   NILL+    A +   A    +    S + VA G       
Sbjct: 86  ALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLK 145

Query: 470 ----EDYDGNTDRISNMEHKDKQSITNTPNF---------------VPNSHYSSFDKRFS 510
               E+   N    +    K+ ++    P+                +  +H  +     +
Sbjct: 146 GLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAH--ALFSAMT 203

Query: 511 FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILID 556
             P   TYN+LM   C     Y  ++LM E+   G  PN  +++I+I+
Sbjct: 204 CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIIN 251



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 153/371 (41%), Gaps = 69/371 (18%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
           +K D   ALR +      L +PN +    +I   G C  G   ++ +++ D++S  +  N
Sbjct: 11  RKHD--QALRLFKEVLAGLFAPNAHTYNVLIR--GFCKGGQMHQAVSVFSDMKSSGLLPN 66

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
               N+L+        +   L++++ MQ    +   AS+NILL+   +AG       +  
Sbjct: 67  ASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAG------RVRD 120

Query: 349 EVKHLE--AKGVLKLDVFTYSTIVKVFA----DAKWWQMALKVKEDMLSAGVTPNTITWS 402
            + HL+   K    +   TY+ ++K        A   + A++  ++M ++GV P+  ++ 
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
            L++A +++G + +A  LF  M    C P+    N+L+        + +  + + + +L 
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDG------YCKIGQTYEAQSLM 231

Query: 463 KTQVALGEDYDGNT-------------DRISN-----MEHKDKQSITNTPNFVPNSHYSS 504
           K  +  G  Y+ N              D++       M+  +   + N   F  N+  + 
Sbjct: 232 KEILKAG--YEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTF--NTLIAG 287

Query: 505 FDK---------------RFSFKPTTTTYNILMKACCT---DYYRVKALMNEMRTVGLSP 546
           F K               +   K T  TYN L+ + C      Y    L N++   GL+P
Sbjct: 288 FCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTP 347

Query: 547 NHISWTILIDA 557
             +++  LI  
Sbjct: 348 TIVTYNSLIQG 358



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 9/243 (3%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKS 275
           VP A + F   +  F K   L  A++ +   +K      +    T+ID +C   G    +
Sbjct: 275 VPNA-VTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTA 333

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
             ++  L    +T  I  +NSL+    +A  L   ++ +  M+      ++ +Y+IL+  
Sbjct: 334 VDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEG-KCAPNVITYSILIDG 392

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
            C        +E    ++ ++A G     V TY  ++  F      + AL   E M  AG
Sbjct: 393 LC---KVRRMKEAAKTLEDMKAHGYTP-TVVTYGGLINGFCKCGELKSALLFFEKMKLAG 448

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             PNT+ +++LI+    A      + L   M   GC+P+    N L+     A + + A 
Sbjct: 449 CAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQ 508

Query: 454 RLF 456
           RLF
Sbjct: 509 RLF 511



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 49/225 (21%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRA-IY 279
           + + + ++ F   R L  A++ +D  +    +PN+     +ID  G+C    MK  A   
Sbjct: 350 VTYNSLIQGFCDARRLSEAMQYFDEMEGK-CAPNVITYSILID--GLCKVRRMKEAAKTL 406

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           ED+++   T  +  +  L+N      +LK  L  ++ M+  G                 A
Sbjct: 407 EDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGC----------------A 450

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
            NTV+                       ++T++     A+     L++   M + G  P+
Sbjct: 451 PNTVI-----------------------FNTLIDGLCKAERANDGLRLLCHMHAEGCKPD 487

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            IT++ LI+   +A  VE A  LF+ M    C PN    N L++ 
Sbjct: 488 VITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFLIRG 529


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 194/468 (41%), Gaps = 61/468 (13%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           +EGR+D  + +L ++ E G  P    +   + +L N   +    GE+E   GL+E +   
Sbjct: 227 KEGRVDQALELLSEMQERGCYP----NDVTYNVLVNGLSK---KGELEQAKGLIEEMLNS 279

Query: 185 RLPVKELD---------------EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229
            L V                   E F +V+  VN+        Y  ++       C +V+
Sbjct: 280 GLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYG----LCKWVQ 335

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNV 287
             G +      LR  D  K   + P++    +++   G C  G   ++  ++++L+ +++
Sbjct: 336 VTGVR------LRFSDMLKSKFT-PDIVSFNSLL--YGYCRTGCISEAFLLFDELKCRDL 386

Query: 288 TLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
              +  +N+L++       L   L + K M   G+  D+ +Y IL+  C   G   +A+ 
Sbjct: 387 VPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARG 446

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
            + E   + +KG LK D F Y+T +          +A  ++E+ML+AG  P+ IT++  +
Sbjct: 447 FFNE---MLSKG-LKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFV 502

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           +A    G  E+A  L E M+  G  P+      ++   V+     +A  +F    LSK  
Sbjct: 503 HALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNE-MLSK-- 559

Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYNILMK 523
              G      T  +    H  KQ +        +  +  F K    S      TYN ++ 
Sbjct: 560 ---GVAPSVVTYTVLIHAHAAKQML--------DLAFMYFSKMLEKSVPANVITYNAIIN 608

Query: 524 ACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             C      +A    +EM   G+ PN  S+TILI+     G  E AL+
Sbjct: 609 GLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALR 656



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 120/289 (41%), Gaps = 39/289 (13%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L V+  M + G++ D+ + N +L+          A+ +YG    +E  G+ K  V TY+T
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYG---MMEQFGI-KPTVVTYNT 220

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  +        AL++  +M   G  PN +T++ L+N  +  G +EQA  L EEML +G
Sbjct: 221 MLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSG 280

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSW-------TLSKTQVAL-----GEDYDGNT 476
              ++   N L+    +   F  AF L           TLS     +          G  
Sbjct: 281 LNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVR 340

Query: 477 DRISNMEHKDKQSITNTPNFVP--------------NSHYSSFD--KRFSFKPTTTTYNI 520
            R S+M  K K     TP+ V               +  +  FD  K     PT  TYN 
Sbjct: 341 LRFSDML-KSKF----TPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNT 395

Query: 521 LMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           L+   C   Y   AL    EM   GL P+  ++TIL++ C   G V  A
Sbjct: 396 LIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMA 444



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 6/174 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G++ ++  + E++ S  +  +   + S++N  V    L+   EV+  M   GV   + +Y
Sbjct: 509 GNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTY 568

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            +L+ A   A   +L        K LE    +  +V TY+ I+      +    A K  +
Sbjct: 569 TVLIHAH--AAKQMLDLAFMYFSKMLEKS--VPANVITYNAIINGLCMTRRMDEAYKYFD 624

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           +M   G+ PN  +++ LIN   N G  E+A+ L+ EML    +P+S   ++ L+
Sbjct: 625 EMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLK 678


>gi|410110069|gb|AFV61114.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           lycioides]
          Length = 429

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 124/252 (49%), Gaps = 6/252 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 42  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 101

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  V  N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 102 SLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 161

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 162 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 217

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 218 VQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 277

Query: 455 LFRSWTLSKTQV 466
           LF+    S  ++
Sbjct: 278 LFQKLRSSGVEI 289



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGV PNT ++S+L+          +A+ +F
Sbjct: 80  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVF 139

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 140 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 191

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R +      TYN +M       ++ +   L+ EM
Sbjct: 192 L----LRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 247

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 248 QNRGIEPNSITYSTIISIWGKVGKLDRA 275



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 97/202 (48%), Gaps = 10/202 (4%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 154 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 213

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  ++ ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++   
Sbjct: 214 RKNIVQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKV 269

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S+GV  + + + ++I A   AGLV  A  L  E+      P     
Sbjct: 270 GKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAI 329

Query: 437 NILLQACVEACQFDRAFRLFRS 458
           +IL      A + + A  +FR 
Sbjct: 330 HIL----AGAGRIEEATYVFRQ 347


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 103/227 (45%), Gaps = 33/227 (14%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +P++Y    +I     CG   K+  I+ ++R   V  ++  + +++        +   +E
Sbjct: 393 APDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAME 452

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV-------------------- 350
            +  M   GV+ D  +Y+ L++  C  G+ + A+E+  E+                    
Sbjct: 453 KFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLC 512

Query: 351 ---KHLEAKGVLKL--------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              + ++A+ +  L        D   Y+ ++  +      + AL+V + M+SAG+ PN +
Sbjct: 513 KLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV 572

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
            + +L+N     G +++ + LF EMLQ G +P++   NI++    EA
Sbjct: 573 GYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEA 619



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 121/279 (43%), Gaps = 29/279 (10%)

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +LG + D+ SYNILLK+ C  G +  A ++   +   E   V   DV  Y+T++  F   
Sbjct: 177 ELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMA--EGGTVCSPDVVAYNTVIDGFFKE 234

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + ++M+  G+ P+ +T+SS+++A   A  +++A     +M+  G  P++   
Sbjct: 235 GDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTY 294

Query: 437 NILLQACVEACQFDRAFRLFRSW-------------TLSKTQVALGEDYDGNTDRISNME 483
           N L+       Q+  A R+F+               TL  +    G+  +   D    M 
Sbjct: 295 NNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEAR-DVFDTMA 353

Query: 484 HKDKQSITNTPNFVPNSHYSS---------FDKRF--SFKPTTTTYNILMKAC--CTDYY 530
            K +     +   + N + +          FD        P   T+N+L+KA   C    
Sbjct: 354 MKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLD 413

Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +   + NEMR  G+ P+ +++  +I A    G ++ A++
Sbjct: 414 KAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAME 452



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 134/325 (41%), Gaps = 37/325 (11%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+ A    + ++ V  + + +N+L+    +    K  + V+K M++  ++ D+ + N L+
Sbjct: 274 KAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLM 333

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            + C  G    A++++     +  KG    DVF+Y+ ++  +A          + + ML 
Sbjct: 334 GSLCKYGKIKEARDVF---DTMAMKGQ-NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLG 389

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+ P+  T++ LI A AN G++++AM +F EM   G +P+      ++ A     + D 
Sbjct: 390 DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDD 449

Query: 452 AFRLFRSWTLSKTQVALGEDY------DGNTDRISNMEHKDKQS-ITNTPNFVPNSHYSS 504
           A   F        Q  + + Y       G     S ++ K+  S I N    +    + S
Sbjct: 450 AMEKFNQMI---DQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGS 506

Query: 505 -----------------FD--KRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVG 543
                            FD        P    YN+LM   C      KAL   + M + G
Sbjct: 507 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 566

Query: 544 LSPNHISWTILIDACGGSGNVEGAL 568
           + PN + +  L++     G ++  L
Sbjct: 567 IEPNVVGYGTLVNGYCKIGRIDEGL 591



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 12/209 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE- 310
           P+ Y    +I   G C  G  +K++ +  ++ +  + L+I  F S++N N   L   ++ 
Sbjct: 464 PDKYAYHCLIQ--GFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIIN-NLCKLGRVMDA 520

Query: 311 --VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
             ++     +G+  D   YN+L+   CL G    A  ++  +        ++ +V  Y T
Sbjct: 521 QNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAM----VSAGIEPNVVGYGT 576

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +V  +         L +  +ML  G+ P+TI ++ +I+    AG    A   F EM ++G
Sbjct: 577 LVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 636

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
              N    +I+L+   +   FD A  LF+
Sbjct: 637 IAMNKCTYSIVLRGLFKNRCFDEAIFLFK 665



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 114/269 (42%), Gaps = 36/269 (13%)

Query: 219 RADILF-CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R DI+F  + +    K   ++ A   +D +      P+  +   ++D   + G   K+  
Sbjct: 498 RLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALR 557

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +++ + S  +  N+  + +L+N       +   L +++ M + G+      YNI++    
Sbjct: 558 VFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 617

Query: 336 LAGNTVLAQEIYGEV--------------------------------KHLEAKGVLKLDV 363
            AG TV A+  + E+                                K L A  V K+D+
Sbjct: 618 EAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNV-KIDI 676

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            T +T++      +  + A  +   +  +G+ P  +T+S +I      GLVE+A  +F  
Sbjct: 677 ITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSS 736

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRA 452
           M  AGCEP+S+  N +++  ++  +  RA
Sbjct: 737 MQNAGCEPDSRLLNHVVRELLKKNEIVRA 765


>gi|255661188|gb|ACU25763.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 426

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 124/252 (49%), Gaps = 6/252 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  V  N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 VQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 275

Query: 455 LFRSWTLSKTQV 466
           LF+    S  ++
Sbjct: 276 LFQKLRSSGVEI 287



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGV PNT ++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R +      TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRA 273



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 97/202 (48%), Gaps = 10/202 (4%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  ++ ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++   
Sbjct: 212 RKNIVQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKV 267

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S+GV  + + + ++I A   AGLV  A  L  E+      P     
Sbjct: 268 GKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAI 327

Query: 437 NILLQACVEACQFDRAFRLFRS 458
           +IL      A + + A  +FR 
Sbjct: 328 HIL----AGAGRIEEATYVFRQ 345


>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
 gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
          Length = 859

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 146/325 (44%), Gaps = 24/325 (7%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           +PN   C T++D     GD  ++  +++++  +  T +   FN++++       L     
Sbjct: 469 TPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGA 528

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V+  M++LG+  D  +Y  L    C  GN    QE + ++K +  +  +   +  Y++++
Sbjct: 529 VFDRMKELGLSPDEITYRTLSDGYCKNGN---VQEAF-QIKGVMERQAMSASIEMYNSLI 584

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 +       +  +M + G++PN +T+ +LI+   +   +++A HL+ EM++ G  
Sbjct: 585 DGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFT 644

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           PN   C+ ++ +            L+R   +S+  V L +  D +   + N +  DK  +
Sbjct: 645 PNVVVCSKIVSS------------LYRDDRISEATVILDKMLDFDILAVHN-KCSDKL-V 690

Query: 491 TNTPNFVPNSHYSSFDKR--FSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSP 546
            N           S DK    +       YNI +   C        +++++ + + G  P
Sbjct: 691 KNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSRGFLP 750

Query: 547 NHISWTILIDACGGSGNVEGALQCR 571
           ++ ++  LI AC  SGNV+ A + R
Sbjct: 751 DNFTYCTLIHACSVSGNVDEAFKLR 775



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 108/265 (40%), Gaps = 53/265 (20%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           + +   M ++G+  +M   N L+K  C  G    A+ ++  V  ++    LK D ++Y+T
Sbjct: 352 VRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVF--VGMVDWN--LKPDCYSYNT 407

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  +        A  + E+ML  G+TP  +T++++I    + G  + A+HL+  M++ G
Sbjct: 408 LLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERG 467

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
             PN   C  +L    +    DRA  L++          LG                   
Sbjct: 468 VTPNEISCCTMLDCFFKMGDSDRAMMLWKE--------ILGR------------------ 501

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
                                 F  +T  +N ++   C         A+ + M+ +GLSP
Sbjct: 502 ---------------------GFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSP 540

Query: 547 NHISWTILIDACGGSGNVEGALQCR 571
           + I++  L D    +GNV+ A Q +
Sbjct: 541 DEITYRTLSDGYCKNGNVQEAFQIK 565



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 4/134 (2%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           YNI +   C +G    A+ +   +  L ++G L  D FTY T++   + +     A K++
Sbjct: 720 YNIAIDGLCKSGKLDEARSV---LSVLMSRGFLP-DNFTYCTLIHACSVSGNVDEAFKLR 775

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           ++ML  G+ PN   +++LIN     G +++A  LF ++ Q G  PN+   NIL+      
Sbjct: 776 DEMLEKGLIPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRI 835

Query: 447 CQFDRAFRLFRSWT 460
              D+A RL    T
Sbjct: 836 GDLDKASRLREKMT 849



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 119/305 (39%), Gaps = 32/305 (10%)

Query: 293 VFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           VF+ LM   A     K  L V+  M ++G +  + S + LL      G   +A  ++ ++
Sbjct: 158 VFDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQI 217

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
                 G++  DV+  S +V          +A++V E M+  G+ PN +T++ L+N    
Sbjct: 218 V---GTGIVP-DVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVG 273

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT------ 464
            G  E    +   M + G   N   C +L++   +  + D A +L R     +       
Sbjct: 274 RGDFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDER 333

Query: 465 ----------QVALGEDYDGNTDRISNMEHKDKQSITNT--PNFVPNSHYSSFDKRF--- 509
                     Q+   ED     D +  +  K    I NT    +         ++ F   
Sbjct: 334 VYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGM 393

Query: 510 ---SFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNV 564
              + KP   +YN L+   C +    KA M   EM   G++P  +++  +I      G+ 
Sbjct: 394 VDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSY 453

Query: 565 EGALQ 569
           + AL 
Sbjct: 454 DDALH 458



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 137/356 (38%), Gaps = 76/356 (21%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289
           + G+  D   A+R  D   +     NM IC T+I        Y K   + E  R      
Sbjct: 344 QMGRMED---AVRIRDEMLRVGLKVNMVICNTLIK------GYCKLGQVCEAER------ 388

Query: 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT----VLAQE 345
                                V+  M    +  D  SYN LL   C  G      +L +E
Sbjct: 389 ---------------------VFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEE 427

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           + G+       G+    V TY+T++K   D   +  AL +   M+  GVTPN I+  +++
Sbjct: 428 MLGD-------GITP-TVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTML 479

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWTLS 462
           +     G  ++AM L++E+L  G   ++   N ++    +  +   A  +F   +   LS
Sbjct: 480 DCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLS 539

Query: 463 KTQV---ALGEDY--DGNTDRISNMEH-KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
             ++    L + Y  +GN      ++   ++Q+++ +       + S  D  F  +    
Sbjct: 540 PDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEM----YNSLIDGLFKIRKLND 595

Query: 517 TYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
             ++L+               EM+T GLSPN +++  LI        ++ A    F
Sbjct: 596 VTDLLV---------------EMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYF 636



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 64/322 (19%), Positives = 123/322 (38%), Gaps = 60/322 (18%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P++Y+C  +++     G    +  + E +  + +  N+  +N L+N  V   D +    V
Sbjct: 224 PDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERV 283

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
            + M + GV  ++ +  +L++  C  G            K  EA+ +L+           
Sbjct: 284 LRLMSERGVSRNVVTCTMLMRGYCKKG------------KMDEAEKLLR----------- 320

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                       +V+ED L   +  +   +  L++     G +E A+ + +EML+ G + 
Sbjct: 321 ------------EVEEDEL---LVVDERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKV 365

Query: 432 NSQCCNILLQACV---EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           N   CN L++      + C+ +R F     W L     +     DG        E K  +
Sbjct: 366 NMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYC-----REGKVSK 420

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
           +       + +             PT  TYN ++K       Y     L + M   G++P
Sbjct: 421 AFMLCEEMLGD----------GITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTP 470

Query: 547 NHISWTILIDACGGSGNVEGAL 568
           N IS   ++D     G+ + A+
Sbjct: 471 NEISCCTMLDCFFKMGDSDRAM 492


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 111/211 (52%), Gaps = 6/211 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHD-LKFTLE 310
           +P+++    +ID     G  +++  +Y+++  +++  +I  ++SL+N    HD L    +
Sbjct: 323 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ 382

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +++ M       D+ SY+ L+K  C A       E++ E+      G    +  TY+T++
Sbjct: 383 MFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVG----NTVTYTTLI 438

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +    A    MA ++ ++M+S GV PN +T+++L++     G +E+AM +FE + ++  E
Sbjct: 439 QGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 498

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           P     NI+++   +A + +  + LF + +L
Sbjct: 499 PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSL 529



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 148/352 (42%), Gaps = 20/352 (5%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +++   +    K + +  AL  +   +     PN+    ++I      G +  +  +  D
Sbjct: 257 LIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 316

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + +  +++ F++L++    + K     ++Y  M K  +   + +Y+ L+   C+   
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A++++   + + +K     DV +YST++K F  AK     +++  +M   G+  NT+
Sbjct: 377 LDEAKQMF---EFMVSKHCFP-DVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+++LI     AG  + A  +F+EM+  G  PN    N LL    +  + ++A  +F   
Sbjct: 433 TYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
             SK +  +   Y  N   I  M    K  + +  +   N            KP    YN
Sbjct: 493 QRSKMEPTI---YTYNI-MIEGMCKAGK--VEDGWDLFCNLSLK------GVKPDVVAYN 540

Query: 520 ILMKACCTDYYR--VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            ++   C    +    AL  EM+  G  PN   +  LI A    G+ E + +
Sbjct: 541 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAE 592



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 119/294 (40%), Gaps = 35/294 (11%)

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
           +   VT N  +    ++  A +    + +   M   G   D+ +Y +++   C  G+T L
Sbjct: 183 QPNTVTFNTLIHGLFLHNKASE---AVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239

Query: 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402
           A  +  +++    +G L+  V  Y+TI+      K    AL + ++M + G+ PN +T+S
Sbjct: 240 AFILLNKME----QGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYS 295

Query: 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462
           SLI+   N G    A  L  +M++    P+    + L+ A V+  +   A +L       
Sbjct: 296 SLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKL------- 348

Query: 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK------PTTT 516
                    YD    R  +       S+ N   F  +       + F F       P   
Sbjct: 349 ---------YDEMVKRSIDPSIVTYSSLIN--GFCMHDRLDEAKQMFEFMVSKHCFPDVV 397

Query: 517 TYNILMKACCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           +Y+ L+K  C    RV     L  EM   GL  N +++T LI     +G+ + A
Sbjct: 398 SYSTLIKGFCK-AKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMA 450



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 128/299 (42%), Gaps = 32/299 (10%)

Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVM 321
           D   + G+ +KSR             +I  F+ L++  A   KF   + + + MQ LG+ 
Sbjct: 64  DAVALFGEMVKSRPFP----------SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMP 113

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            +  +Y+IL+   C      LA  + G++  L  +     ++ T S+++  +  +K    
Sbjct: 114 HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEP----NIVTLSSLLNGYCHSKRISE 169

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A+ + + M   G  PNT+T+++LI+         +A+ L + M+  GC+P+     +++ 
Sbjct: 170 AVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVN 229

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
              +    D AF L       K +  +   Y    D +   +H D     +  N      
Sbjct: 230 GLCKRGDTDLAFILLNKMEQGKLEPGV-LIYTTIIDGLCKNKHMD-----DALNLFKEME 283

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILIDA 557
                     +P   TY+ L+ +C  +Y R      L+++M    ++P+  +++ LIDA
Sbjct: 284 TK------GIRPNVVTYSSLI-SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDA 335



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 108/243 (44%), Gaps = 23/243 (9%)

Query: 191 LDEEFRIVQLCVNK---PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247
           LDE  ++ +  V+K   PDV              + +   ++ F K + +   +  +   
Sbjct: 377 LDEAKQMFEFMVSKHCFPDV--------------VSYSTLIKGFCKAKRVDEGMELFREM 422

Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305
            +     N     T+I      GD   ++ I++++ S  V  NI  +N+L++       L
Sbjct: 423 SQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           +  + V++ +Q+  +   + +YNI+++  C AG      +++    +L  KGV K DV  
Sbjct: 483 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC---NLSLKGV-KPDVVA 538

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+T++  F      + A  + ++M   G  PN+  +++LI A    G  E +  L +EM 
Sbjct: 539 YNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 598

Query: 426 QAG 428
             G
Sbjct: 599 SCG 601



 Score = 38.9 bits (89), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 42/214 (19%), Positives = 82/214 (38%), Gaps = 26/214 (12%)

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           +  +S ++   A    + + + + E M + G+  N  T+S LIN       +  A+ +  
Sbjct: 81  IIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLG 140

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
           +M++ G EPN    + LL     + +   A  L     ++         Y  NT   + +
Sbjct: 141 KMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT--------GYQPNTVTFNTL 192

Query: 483 EH------KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKA 534
            H      K  +++      V              +P   TY +++   C   D      
Sbjct: 193 IHGLFLHNKASEAVALIDRMVAK----------GCQPDLVTYGVVVNGLCKRGDTDLAFI 242

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
           L+N+M    L P  + +T +ID    + +++ AL
Sbjct: 243 LLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDAL 276


>gi|410110073|gb|AFV61116.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           virgata]
          Length = 424

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 124/252 (49%), Gaps = 6/252 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 47  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 106

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  V  N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 107 SLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 166

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 167 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 222

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 223 VQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 282

Query: 455 LFRSWTLSKTQV 466
           LF+    S  ++
Sbjct: 283 LFQKLRSSGVEI 294



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 130/295 (44%), Gaps = 20/295 (6%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
            +++++R + ++ + Y +++L+     +  F   L   + M++  V  D+  Y+ L++  
Sbjct: 2   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 61

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
               +   A  I+  +K    +     D+  Y+ ++ VF  AK ++ A  +  +M +AGV
Sbjct: 62  RKLCDYSKAISIFSRLK----RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGV 117

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PNT ++S+L+          +A+ +F EM +  C  +   CNI++    +      A +
Sbjct: 118 MPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 177

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           LF  W + K  +      + N    + +     +   +   F    H     +R +    
Sbjct: 178 LF--WGMRKMGI------EPNVVSYNTL----LRVYGDAELFGEAIHLFRLMQRKNIVQN 225

Query: 515 TTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             TYN +M       ++ +   L+ EM+  G+ PN I+++ +I   G  G ++ A
Sbjct: 226 VVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRA 280



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 96/202 (47%), Gaps = 10/202 (4%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 159 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 218

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  ++ ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++   
Sbjct: 219 RKNIVQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKV 274

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S+GV  + + + ++  A   AGLV  A  L  E+      P     
Sbjct: 275 GKLDRAAMLFQKLRSSGVEIDQVLYQTMXVAYERAGLVAHAKRLLHELKSPDNIPRDTAI 334

Query: 437 NILLQACVEACQFDRAFRLFRS 458
           +IL      A + + A  +FR 
Sbjct: 335 HIL----AGAGRIEEATYVFRQ 352


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 133/313 (42%), Gaps = 30/313 (9%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLG 319
           V G C  G    +R + +++    V LN   +N L++      +D +   EV K M+  G
Sbjct: 140 VDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVA-EVLKEMESGG 198

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           V   + +Y IL+     AG+    + ++ E+K     G    DV+ YS ++  +  A   
Sbjct: 199 VEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAG----DVYFYSAVINAYCRAGNV 254

Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
           + A +V ++ +  G+ PN  T+ +LIN     G +E A  L  +M   G   N    N +
Sbjct: 255 RRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTM 314

Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD-----RISNMEHKDKQSITNTP 494
           +         D+A  +     + +  + L + Y  NT      R++ ME   K     T 
Sbjct: 315 IDGYCRHGMVDKALEI--KAVMERMGIQL-DVYTYNTLACGLCRVNRMEDAKKLLHIMTE 371

Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTIL 554
           N V  S+Y S+         TT  +I  K    D    + L  +M   G  P+ +++ ++
Sbjct: 372 NGV-ESNYVSY---------TTLISIHSKE--GDMVEARRLFRDMEGKGSRPSVVTYNVM 419

Query: 555 IDACGGSGNVEGA 567
           ID    SG++  A
Sbjct: 420 IDGYIKSGSIREA 432



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 18/210 (8%)

Query: 255 NMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLM----NVN-AHDLKF 307
           N  I  T+ID  G C   M  +A  I   +    + L++Y +N+L      VN   D K 
Sbjct: 307 NQIIFNTMID--GYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKK 364

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            L +   M + GV ++  SY  L+      G+ V A+ ++   + +E KG  +  V TY+
Sbjct: 365 LLHI---MTENGVESNYVSYTTLISIHSKEGDMVEARRLF---RDMEGKGS-RPSVVTYN 417

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQ 426
            ++  +  +   + A + K++M   G+ P+  T+++L++  C N G V+ A+ LFEEM Q
Sbjct: 418 VMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVN-GKVDVALRLFEEMKQ 476

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            G +PN      L+    +  + + AF+ +
Sbjct: 477 RGAKPNVVAYTALISGLAKEGRSEEAFQFY 506



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 89/179 (49%), Gaps = 8/179 (4%)

Query: 266 CGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVM 321
           CG+C       ++ +   +    V  N   + +L+++++   D+     ++++M+  G  
Sbjct: 351 CGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSR 410

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
             + +YN+++     +G+   A+      K +E KG++  DV+TY+ +V          +
Sbjct: 411 PSVVTYNVMIDGYIKSGSIREAERFK---KEMEKKGLVP-DVYTYAALVHGHCVNGKVDV 466

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           AL++ E+M   G  PN + +++LI+  A  G  E+A   ++ ML AG  P+    ++L+
Sbjct: 467 ALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLV 525



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 134/351 (38%), Gaps = 82/351 (23%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
           P +     ++D     GD  K  +++++++ +NV  ++Y +++++N    A +++   EV
Sbjct: 201 PTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEV 260

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI------------------------- 346
           +      G+  +  +Y  L+   C  G    A+ +                         
Sbjct: 261 FDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCR 320

Query: 347 YGEV-KHLEAKGVL-----KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
           +G V K LE K V+     +LDV+TY+T+          + A K+   M   GV  N ++
Sbjct: 321 HGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVS 380

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
           +++LI+  +  G + +A  LF +M   G  P+    N+++   +++     A R  +   
Sbjct: 381 YTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKK--- 437

Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
                                ME K           VP+ +               TY  
Sbjct: 438 --------------------EMEKK---------GLVPDVY---------------TYAA 453

Query: 521 LMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L+   C +     A  L  EM+  G  PN +++T LI      G  E A Q
Sbjct: 454 LVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQ 504



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           T+I +    GD +++R ++ D+  +    ++  +N +++  + +  ++      K M+K 
Sbjct: 383 TLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKK 442

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G++ D+ +Y  L+   C+ G   +A  ++ E+K   AK     +V  Y+ ++   A    
Sbjct: 443 GLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKP----NVVAYTALISGLAKEGR 498

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINA 407
            + A +  ++ML+AG+TP+   +S L+ +
Sbjct: 499 SEEAFQFYDNMLAAGLTPDDTLYSMLVGS 527


>gi|413939576|gb|AFW74127.1| hypothetical protein ZEAMMB73_460696 [Zea mays]
          Length = 581

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 133/324 (41%), Gaps = 38/324 (11%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           D+M++R +  D  +    L   +  + M   A        V+  M + G+ A    YN +
Sbjct: 132 DHMRARGLAPDAHACTALLTA-LARARMTATAR------RVFDEMARAGLAATTHVYNAM 184

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           L  C  AG+   A+ I   V  ++A GV  LD F+Y+T++ ++        A+  ++ M 
Sbjct: 185 LHVCLKAGDAAQAEAI---VTRMDAAGV-TLDRFSYNTVIALYCRKGMGYEAMCARDRMD 240

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
             G+ P+T+TW+S I+     G V++A  LF EM+ A   P++     L+     A   +
Sbjct: 241 KEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTTLIDGYCRAGNVE 300

Query: 451 RAFRLFRSWTLSKTQVALGEDY---------DGNTDRISNMEHKDKQSITNTPNFVPNSH 501
            A +L R    +   +     Y         DGN   +  + H+         +   N+ 
Sbjct: 301 EAVKL-RGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQADHVTCNTL 359

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCT-DYYRVKALMN----------------EMRTVGL 544
            +++ KR            +M++    +++  KAL++                +M   G 
Sbjct: 360 INAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCKARELDGAKEAFFQMVDAGF 419

Query: 545 SPNHISWTILIDACGGSGNVEGAL 568
           SPN+  ++ L+D      N +  L
Sbjct: 420 SPNYSVFSWLVDGFCKKNNADAVL 443



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 98/214 (45%), Gaps = 6/214 (2%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
             + R   +A R +D   +   +   ++   ++ VC   GD  ++ AI   + +  VTL+
Sbjct: 153 LARARMTATARRVFDEMARAGLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLD 212

Query: 291 IYVFNSLMNVNAHD-LKFTLEVYKN-MQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
            + +N+++ +     + +     ++ M K G+  D  ++N  +   C  G    A +++ 
Sbjct: 213 RFSYNTVIALYCRKGMGYEAMCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFT 272

Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           E+   +A      D  TY+T++  +  A   + A+K++  M +AG+ P   T+++++   
Sbjct: 273 EMVAAQATP----DNVTYTTLIDGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKL 328

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
              G +++   L  EM     + +   CN L+ A
Sbjct: 329 CEDGNMKEVHRLLHEMDGRKVQADHVTCNTLINA 362



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 42/221 (19%)

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           S +V V A +     A++V + M + G+ P+    ++L+ A A A +   A  +F+EM +
Sbjct: 112 SWLVLVLAQSARPHDAVRVFDHMRARGLAPDAHACTALLTALARARMTATARRVFDEMAR 171

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-----TLSK----TQVAL----GEDYD 473
           AG    +   N +L  C++A    +A  +         TL +    T +AL    G  Y+
Sbjct: 172 AGLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVIALYCRKGMGYE 231

Query: 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK 533
               R    +  DK+ I                     +P T T+N  +   C +  RVK
Sbjct: 232 AMCAR----DRMDKEGI---------------------RPDTVTWNSSIHGLCKE-GRVK 265

Query: 534 ---ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
               L  EM     +P+++++T LID    +GNVE A++ R
Sbjct: 266 EAAQLFTEMVAAQATPDNVTYTTLIDGYCRAGNVEEAVKLR 306



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 94/209 (44%), Gaps = 10/209 (4%)

Query: 252 SSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKF 307
           ++P+     T+ID  G C  G+  ++  +   + +  +   +  +N+++     D  +K 
Sbjct: 279 ATPDNVTYTTLID--GYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKE 336

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
              +   M    V AD  + N L+ A C  G+   A ++  + K +E+   L+L+ FTY 
Sbjct: 337 VHRLLHEMDGRKVQADHVTCNTLINAYCKRGDMTSACKV--KKKMMESG--LQLNHFTYK 392

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            ++  F  A+    A +    M+ AG +PN   +S L++        +  + + +E+++ 
Sbjct: 393 ALIHGFCKARELDGAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLAIPDELMKR 452

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLF 456
           G  P+      L++        D+A R+F
Sbjct: 453 GLPPDKAVYRSLIRRLCRKGLVDQAQRVF 481



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 11/156 (7%)

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           M  R +  D  + N  +N Y           D+    +V K M + G+  +  +Y  L+ 
Sbjct: 344 MDGRKVQADHVTCNTLINAYCKRG-------DMTSACKVKKKMMESGLQLNHFTYKALIH 396

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C A     A+E + ++  ++A       VF++  +V  F         L + ++++  
Sbjct: 397 GFCKARELDGAKEAFFQM--VDAGFSPNYSVFSW--LVDGFCKKNNADAVLAIPDELMKR 452

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           G+ P+   + SLI      GLV+QA  +F++M   G
Sbjct: 453 GLPPDKAVYRSLIRRLCRKGLVDQAQRVFDQMQSKG 488


>gi|255661008|gb|ACU25673.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 369

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 56/304 (18%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   +  +Y+D+    V+ +  V+N+++N    A  +K   E+++ M + G  + +AS+
Sbjct: 4   GDIDGAERVYKDIVDSKVSPDAVVYNAMLNGFYRAGRIKDCFELWEMMGREGNRS-VASF 62

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           NI+++     G       I+     L  KG    D  TY  +V  F    +   +L+V E
Sbjct: 63  NIMMRGLFDNGRVDEVNSIW----ELMKKGGYVEDSITYGILVHGFCKNGYINKSLRVLE 118

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
                G   +   +S++IN       +E+A+ +   M+++GC+PN+   N L+   + A 
Sbjct: 119 TAERKGGVLDAFAYSAMINGLCKETKLEKAISVLNGMIKSGCKPNTHVYNALINGLIGAS 178

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
           + + A R+FR   +                                      +H S    
Sbjct: 179 KSEDAIRVFREMGI--------------------------------------THCS---- 196

Query: 508 RFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
                PT  TYNIL+   C    +     L+ EM   GL+P+ I++++L+        +E
Sbjct: 197 -----PTIVTYNILINGLCKSERFGEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKIE 251

Query: 566 GALQ 569
            ALQ
Sbjct: 252 MALQ 255



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 111/282 (39%), Gaps = 46/282 (16%)

Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKL 318
           I V G C  G   KS  + E    +   L+ + +++++N    + K    + V   M K 
Sbjct: 99  ILVHGFCKNGYINKSLRVLETAERKGGVLDAFAYSAMINGLCKETKLEKAISVLNGMIKS 158

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYSTIVKVFADA 376
           G   +   YN L+     A  +  A  ++ E  + H          + TY+ ++     +
Sbjct: 159 GCKPNTHVYNALINGLIGASKSEDAIRVFREMGITHCSPT------IVTYNILINGLCKS 212

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
           + +  A  + ++ML  G+TP+ IT+S L+        +E A+ L+ ++ + G +P+ Q  
Sbjct: 213 ERFGEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKIEMALQLWNQVTKNGFKPDVQMH 272

Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
           N L+                   ++ KTQ+AL    D        M + +      T N 
Sbjct: 273 NTLIHGLC---------------SVGKTQLALSLYLD--------MNYWNCAPNLVTQNT 309

Query: 497 VPNSHYSSFDKRFS-----------FKPTTTTYNILMKACCT 527
           +    Y   D R +            +P   +YNI +K  C+
Sbjct: 310 LMEGFYKDGDMRNALVIWARILKNELQPDIISYNITLKGLCS 351


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 194/468 (41%), Gaps = 61/468 (13%)

Query: 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184
           +EGR+D  + +L ++ E G  P    +   + +L N   +    GE+E   GL+E +   
Sbjct: 227 KEGRVDQALELLSEMQERGCYP----NDVTYNVLVNGLSK---KGELEQAKGLIEEMLNS 279

Query: 185 RLPVKELD---------------EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229
            L V                   E F +V+  VN+        Y  ++       C +V+
Sbjct: 280 GLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYG----LCKWVQ 335

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNV 287
             G +      LR  D  K   + P++    +++   G C  G   ++  ++++L+ +++
Sbjct: 336 VTGVR------LRFSDMLKSKFT-PDIVSFNSLL--YGYCRTGCISEAFLLFDELKCRDL 386

Query: 288 TLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
              +  +N+L++       L   L + K M   G+  D+ +Y IL+  C   G   +A+ 
Sbjct: 387 VPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARG 446

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
            + E   + +KG LK D F Y+T +          +A  ++E+ML+AG  P+ IT++  +
Sbjct: 447 FFNE---MLSKG-LKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFV 502

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
           +A    G  E+A  L E M+  G  P+      ++   V+     +A  +F    LSK  
Sbjct: 503 HALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNE-MLSK-- 559

Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF--SFKPTTTTYNILMK 523
              G      T  +    H  KQ +        +  +  F K    S      TYN ++ 
Sbjct: 560 ---GVAPSVVTYTVLIHAHAAKQML--------DLAFMYFSKMLEKSVPANVITYNAIIN 608

Query: 524 ACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
             C      +A    +EM   G+ PN  S+TILI+     G  E AL+
Sbjct: 609 GLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALR 656



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 123/291 (42%), Gaps = 43/291 (14%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVL--AQEIYGEVKHLEAKGVLKLDVFTY 366
           L V+  M + G++ D+ + N +L+   L    +L  A+ +YG    +E  G+ K  V TY
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRV--LRDENLLSKAKNVYG---MMEQFGI-KPTVVTY 218

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++  +        AL++  +M   G  PN +T++ L+N  +  G +EQA  L EEML 
Sbjct: 219 NTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLN 278

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-------TLSKTQVAL-----GEDYDG 474
           +G   ++   N L+    +   F  AF L           TLS     +          G
Sbjct: 279 SGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTG 338

Query: 475 NTDRISNMEHKDKQSITNTPNFVP--------------NSHYSSFD--KRFSFKPTTTTY 518
              R S+M  K K     TP+ V               +  +  FD  K     PT  TY
Sbjct: 339 VRLRFSDM-LKSKF----TPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITY 393

Query: 519 NILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           N L+   C   Y   AL    EM   GL P+  ++TIL++ C   G V  A
Sbjct: 394 NTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMA 444



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 6/174 (3%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G++ ++  + E++ S  +  +   + S++N  V    L+   EV+  M   GV   + +Y
Sbjct: 509 GNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTY 568

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            +L+ A   A   +L        K LE    +  +V TY+ I+      +    A K  +
Sbjct: 569 TVLIHAH--AAKQMLDLAFMYFSKMLEKS--VPANVITYNAIINGLCMTRRMDEAYKYFD 624

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           +M   G+ PN  +++ LIN   N G  E+A+ L+ EML    +P+S   ++ L+
Sbjct: 625 EMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLK 678


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 53/262 (20%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++ + M K G   ++ +YN L+ +   A     A  ++ +++ +  +     D  TY T+
Sbjct: 404 KLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEP----DRVTYCTL 459

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           + + A A +  +A+ + E M   G++P+T T+S +IN    +G +  A  LF EM+  GC
Sbjct: 460 IDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGC 519

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            PN    NIL+    +A  +  A  L+R                            D Q+
Sbjct: 520 VPNIVTYNILIALQAKARNYQTALELYR----------------------------DMQN 551

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPN 547
                                FKP   TY+I+M+    C      +A+  EMR     P+
Sbjct: 552 A-------------------GFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPD 592

Query: 548 HISWTILIDACGGSGNVEGALQ 569
              + +L+D  G +GNVE A +
Sbjct: 593 EPVYGLLVDLWGKAGNVEKAWE 614



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 114/250 (45%), Gaps = 12/250 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  +G+   L  AL  ++  ++    P+     T+ID+    G    + ++YE 
Sbjct: 419 VTYNRLIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYER 478

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           ++   ++ + + ++ ++N    + +L     ++  M   G + ++ +YNIL+     A N
Sbjct: 479 MQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARN 538

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A E+Y ++++       K D  TYS +++V     + + A  V  +M      P+  
Sbjct: 539 YQTALELYRDMQN----AGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEP 594

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
            +  L++    AG VE+A   +  ML+AG  PN   CN LL A      F R  RL  ++
Sbjct: 595 VYGLLVDLWGKAGNVEKAWEWYHTMLRAGLLPNVPTCNSLLSA------FLRVHRLPDAY 648

Query: 460 TLSKTQVALG 469
            L +  V LG
Sbjct: 649 NLLQNMVTLG 658



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 7/235 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  +    K   L  A+  Y+  ++   SP+ +    +I+  G  G+   +  ++ +
Sbjct: 454 VTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCE 513

Query: 282 LRSQNVTLNIYVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  Q    NI  +N L  +   A + +  LE+Y++MQ  G   D  +Y+I+++     G 
Sbjct: 514 MVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEVLGHCGY 573

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ ++ E++    +     D   Y  +V ++  A   + A +    ML AG+ PN  
Sbjct: 574 LEEAEAVFFEMR----QNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTMLRAGLLPNVP 629

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-CQFDRAF 453
           T +SL++A      +  A +L + M+  G  P+ Q   +LL  C EA   +D  F
Sbjct: 630 TCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCTEAQSPYDMGF 684


>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Brachypodium distachyon]
          Length = 613

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 55/315 (17%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYED-LRSQNV-TLNIYVFNSLMNVNAHDLKFTLEV 311
           P++     +ID  G      K+ +IY   L +Q V T + Y        NA  L     V
Sbjct: 185 PDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEGV 244

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
              MQ+ G+      YN  L     A  TV A E+Y  +K    K   + +  TY+ ++ 
Sbjct: 245 ISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMK----KERCRTNTETYTLMIN 300

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
           V+  +K    A+K+  +M S G   N  T+++L+NA A  GL E+A  +FE+M QAG EP
Sbjct: 301 VYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEP 360

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    N L++A   A     A  +F                       S M+H       
Sbjct: 361 DVYAYNALMEAYSRAGFPQGASEIF-----------------------SLMQH------- 390

Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHI 549
                               +P   +YNIL+ A      +   +A    ++  G++P   
Sbjct: 391 -----------------MGCEPDRASYNILVDAYGRAGLHREAEATFESLKQQGMAPTMK 433

Query: 550 SWTILIDACGGSGNV 564
           S  +L+ A   SGNV
Sbjct: 434 SHMLLLSAHARSGNV 448



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 103/227 (45%), Gaps = 7/227 (3%)

Query: 219 RADILFCNF-VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R DI+  N  +  +G+KR L  A   Y A  +    P       ++          ++  
Sbjct: 184 RPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEG 243

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +  +++   +  +  V+N+ ++  + A      +EVY+ M+K     +  +Y +++    
Sbjct: 244 VISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYG 303

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +   + A +I+ E++ +  K     ++ TY+ +V  FA     + A +V E M  AG  
Sbjct: 304 KSKQPMSAMKIFNEMQSIGCKA----NICTYTALVNAFAREGLCEKAEEVFEQMQQAGHE 359

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           P+   +++L+ A + AG  + A  +F  M   GCEP+    NIL+ A
Sbjct: 360 PDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDA 406



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 112/244 (45%), Gaps = 8/244 (3%)

Query: 202 VNKPD-VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICR 260
           +NK + +  A+  A  VP  D  +   +R +   R L  A       ++H   P+  +  
Sbjct: 203 LNKAESIYAAVLEAQCVPTEDT-YALLLRAYCNARSLHRAEGVISEMQEHGIPPSATVYN 261

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLK--FTLEVYKNMQKL 318
             +D        +K+  +Y+ ++ +    N   +  ++NV     +    ++++  MQ +
Sbjct: 262 AYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSI 321

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G  A++ +Y  L+ A    G    A+E++ +++    +   + DV+ Y+ +++ ++ A +
Sbjct: 322 GCKANICTYTALVNAFAREGLCEKAEEVFEQMQ----QAGHEPDVYAYNALMEAYSRAGF 377

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
            Q A ++   M   G  P+  +++ L++A   AGL  +A   FE + Q G  P  +   +
Sbjct: 378 PQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEATFESLKQQGMAPTMKSHML 437

Query: 439 LLQA 442
           LL A
Sbjct: 438 LLSA 441



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 91/204 (44%), Gaps = 12/204 (5%)

Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLG 319
           ++D  G  G + ++ A +E L+ Q +   +     L++ +A   ++    +V   + K G
Sbjct: 403 LVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSG 462

Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
           +  D  + N +L A   AG     + +   +  ++  G    DV +++  V  +A A + 
Sbjct: 463 LRPDTFALNAMLHAYARAGRLDDMERL---LAAMDLAG--SADVGSHNVAVNAYARAGYL 517

Query: 380 QMALKVKEDML-----SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                  E +        G+  + ++W+S +   A      + + +FEEM+ AGC P++ 
Sbjct: 518 GRMEAAFEGIRRRKGKKGGIDADVVSWTSRMGGYARKKEYGKCLEIFEEMVDAGCYPDAG 577

Query: 435 CCNILLQACVEACQFDRAFRLFRS 458
              +L+ AC +  Q ++   + RS
Sbjct: 578 TAKVLMAACSDERQVEQVAAIVRS 601



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 39/200 (19%), Positives = 86/200 (43%), Gaps = 2/200 (1%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            V  +G+      A   +++ K+   +P M     ++      G+  +   +   L    
Sbjct: 403 LVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSG 462

Query: 287 VTLNIYVFNSLMNVNAHDLKFT-LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
           +  + +  N++++  A   +   +E       L   AD+ S+N+ + A   AG     + 
Sbjct: 463 LRPDTFALNAMLHAYARAGRLDDMERLLAAMDLAGSADVGSHNVAVNAYARAGYLGRMEA 522

Query: 346 IYGEVKHLEAK-GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
            +  ++  + K G +  DV ++++ +  +A  K +   L++ E+M+ AG  P+  T   L
Sbjct: 523 AFEGIRRRKGKKGGIDADVVSWTSRMGGYARKKEYGKCLEIFEEMVDAGCYPDAGTAKVL 582

Query: 405 INACANAGLVEQAMHLFEEM 424
           + AC++   VEQ   +   M
Sbjct: 583 MAACSDERQVEQVAAIVRSM 602


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 148/358 (41%), Gaps = 36/358 (10%)

Query: 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--V 300
           A  A    + SP  +    ++D C        + A +  L    + ++I + N L+    
Sbjct: 98  ASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFC 157

Query: 301 NAHDLKFTLEVY-KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
            A      L++      +LG + D+ SY+ILLK+ C  G +  A ++   +   E   V 
Sbjct: 158 EAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA--EGGAVC 215

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             DV  Y+T++  F        A  + ++M+  G+ P+ +T+SS+++A   A  +++A  
Sbjct: 216 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEA 275

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT--- 476
              +M+  G  PN+   N L+       Q+  A R+F+     + Q  L +    N    
Sbjct: 276 FLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM---RRQSILPDVVTFNMLMG 332

Query: 477 ------------DRISNMEHKDKQSITNTPNFVPNSHYSS---------FDKRF--SFKP 513
                       D    M  K +     + N + N + +          FD        P
Sbjct: 333 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 392

Query: 514 TTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              T+N+L+KA   C    +   + NEMR  G+ PN +++T +I A    G ++ A++
Sbjct: 393 VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAME 450



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 33/211 (15%)

Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMAS 326
           CG   K+  I+ ++R   V  N+  + +++       K    +E +  M   GV  D  +
Sbjct: 407 CGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYA 466

Query: 327 YNILLKACCLAGNTVLAQEIYGEV-----------------------KHLEAKGVLKLDV 363
           Y+ L++  C  G+ + A+E+  E+                       + ++A+ +  L V
Sbjct: 467 YHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTV 526

Query: 364 --------FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
                     YS ++  +      + AL+V + M+SAG+ PN + + +L+N     G ++
Sbjct: 527 NVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRID 586

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           + + LF EMLQ G +P++   NI++    EA
Sbjct: 587 EGLSLFREMLQKGIKPSTILYNIIIDGLFEA 617



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 135/322 (41%), Gaps = 31/322 (9%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+ A    + ++ V  N + +N+L+    +    K  + V+K M++  ++ D+ ++N+L+
Sbjct: 272 KAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLM 331

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            + C  G    A++++     +  KG    DVF+Y+ ++  +A          + + ML 
Sbjct: 332 GSLCKYGKIKEARDVFDT---MAMKGQ-NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLG 387

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+ P   T++ LI A AN G++++AM +F EM   G +PN      ++ A     + D 
Sbjct: 388 DGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDD 447

Query: 452 AFRLFRSWTLSK----------------TQVALGEDYDGNTDRISNMEHKDK---QSITN 492
           A   F                       T  +L +  +  ++ ++N  H D     SI N
Sbjct: 448 AMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIIN 507

Query: 493 T----PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
                   +   +           PT   Y++LM   C      KAL   + M + G+ P
Sbjct: 508 NLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEP 567

Query: 547 NHISWTILIDACGGSGNVEGAL 568
           N + +  L++     G ++  L
Sbjct: 568 NDVVYGTLVNGYCKIGRIDEGL 589



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 111/265 (41%), Gaps = 35/265 (13%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +LF + +    K   ++ A   +D +      P   +   ++D   + G   K+  +++ 
Sbjct: 500 VLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDA 559

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S  +  N  V+ +L+N       +   L +++ M + G+      YNI++     AG 
Sbjct: 560 MVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGR 619

Query: 340 TVLAQEIYGEV--------------------------------KHLEAKGVLKLDVFTYS 367
           TV A+  + E+                                K L A  V K+D+ T +
Sbjct: 620 TVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNV-KIDIITLN 678

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           T++      +  + A  +   +  +G+ P  +T+S +I      GLVE+A  +F  M  A
Sbjct: 679 TMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNA 738

Query: 428 GCEPNSQCCNILLQACVEACQFDRA 452
           GCEP+S+  N +++  ++  +  RA
Sbjct: 739 GCEPDSRLLNHVVRELLKKNEIVRA 763



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 97/210 (46%), Gaps = 12/210 (5%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310
           +P+ Y    +I   G C  G  +K++ +  ++ +  + L+I +F+S++N N   L   ++
Sbjct: 461 APDKYAYHCLIQ--GFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIIN-NLCKLGRVMD 517

Query: 311 ---VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
              ++     +G+      Y++L+   CL G    A  ++     + + G+   DV  Y 
Sbjct: 518 AQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVF---DAMVSAGIEPNDV-VYG 573

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           T+V  +         L +  +ML  G+ P+TI ++ +I+    AG    A   F EM ++
Sbjct: 574 TLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES 633

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFR 457
           G   N    +I+L+   +   FD A  LF+
Sbjct: 634 GIAMNKCTYSIVLRGLFKNRCFDEAIFLFK 663


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 116/559 (20%), Positives = 218/559 (38%), Gaps = 82/559 (14%)

Query: 59  LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVAS 118
           L S  R+ LS     Y  +     KDGR+EE   +V+ +        K    + ++ VA 
Sbjct: 276 LESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEM--------KETGDIVVDEVAY 327

Query: 119 GIVKS--IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVG 176
           G++ +   + GR+D    V  ++ + G+  + LF      +       L   G +E    
Sbjct: 328 GMMINGYCQRGRMDDATRVRNEMRDAGIH-VNLF------VYNTMINGLCKLGRMEEVQK 380

Query: 177 LMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-----ADILFCNFVREF 231
           +++ +E+  +   +      I   C  +  +  A     ++ R       + +   ++ F
Sbjct: 381 VLQEMEDVGMRPDKYSYNTLIDGYC-REGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGF 439

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
                +  ALR +    K   +PN   C T++D     G   ++  ++++  ++ +  N+
Sbjct: 440 CSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNV 499

Query: 292 YVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             FN+++N       +    E+   M++L    D  +Y  L    C  G    A  +  +
Sbjct: 500 ITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNK 559

Query: 350 VKHLE-AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           ++HL  A  V   + F     +     AK W     +  +M + G++PN +T+ +LI   
Sbjct: 560 MEHLGFAPSVEMFNSFITGHFI-----AKQWHKVNDIHSEMSARGLSPNLVTYGALIAGW 614

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT-------- 460
              G + +A +L+ EM+  G  PN   C+ L+    +  + D A  + +           
Sbjct: 615 CKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGC 674

Query: 461 ------LSKTQVALGEDYDGNTDRISNMEH------------KDKQSITNT---PNFVP- 498
                 + K    +    DGN    + M +             D +S+  +     F+P 
Sbjct: 675 SISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPD 734

Query: 499 NSHYSSF----------DKRFSFK---------PTTTTYNILMKACCTD--YYRVKALMN 537
           N  YSS           D+ FS +         P   TYN L+   C      R   L N
Sbjct: 735 NFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFN 794

Query: 538 EMRTVGLSPNHISWTILID 556
           ++++ G+SPN I++  LID
Sbjct: 795 KLQSKGISPNGITYNTLID 813



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 105/241 (43%), Gaps = 53/241 (21%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           +N+++   C +G    A+ ++   + L  K  L  D FTYS+++   A +     A  ++
Sbjct: 703 WNVIIFGLCKSGRIADAKSLF---ESLRNKRFLP-DNFTYSSLIHGCAASGSIDEAFSLR 758

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           + MLSAG+TPN IT++SLI     +G + +A++LF ++   G  PN    N L+    + 
Sbjct: 759 DVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKE 818

Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
            +   AF+L                               KQ +                
Sbjct: 819 GKTTEAFKL-------------------------------KQKMVEE------------- 834

Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
                +PT  TY+IL+   CT  Y  +A  L+++M    + PN+I++  LI     SGN+
Sbjct: 835 ---GIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNM 891

Query: 565 E 565
           E
Sbjct: 892 E 892



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 122/312 (39%), Gaps = 68/312 (21%)

Query: 269 CGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNVN-----AHDLKFTLEVYKNMQKLGVM 321
           C D   ++A+   E++    + +N+  ++++M+         D +  LE   ++Q+ G+ 
Sbjct: 229 CRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILE---SLQRKGLS 285

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            ++ +Y +L+K  C  G    A+ +   VK ++  G + +D   Y  ++  +        
Sbjct: 286 PNVVTYTLLVKGYCKDGRMEEAERV---VKEMKETGDIVVDEVAYGMMINGYCQRGRMDD 342

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A +V+ +M  AG+  N   ++++IN     G +E+   + +EM   G  P+    N L+ 
Sbjct: 343 ATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLID 402

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
                    +AF + R                                            
Sbjct: 403 GYCREGSMRKAFEMCRMMV----------------------------------------- 421

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCT-----DYYRVKALMNEMRTVGLSPNHISWTILID 556
                 R     TT TYN L+K  C+     D  R+  LM +    G++PN IS + L+D
Sbjct: 422 ------RNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKR---GVAPNEISCSTLLD 472

Query: 557 ACGGSGNVEGAL 568
               +G  E AL
Sbjct: 473 GLFKAGKTEQAL 484



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 99/198 (50%), Gaps = 12/198 (6%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLKFTLEVYKNMQKL 318
           + G+C  G    +++++E LR++    + + ++SL++  A     D  F+L     M   
Sbjct: 707 IFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLR--DVMLSA 764

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  ++ +YN L+   C +G    A  ++ +   L++KG+   +  TY+T++  +     
Sbjct: 765 GLTPNIITYNSLIYGLCKSGKLSRAVNLFNK---LQSKGI-SPNGITYNTLIDEYCKEGK 820

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A K+K+ M+  G+ P  IT+S LI      G +E+A+ L ++M++   +PN      
Sbjct: 821 TTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCT 880

Query: 439 LLQACVEACQFDRAFRLF 456
           L+   +++   +   +L+
Sbjct: 881 LIHGYIKSGNMEEISKLY 898



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/290 (20%), Positives = 124/290 (42%), Gaps = 35/290 (12%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V   M+  G+  ++  YN ++   C  G     Q++  E++ +     ++ D ++Y+T++
Sbjct: 346 VRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVG----MRPDKYSYNTLI 401

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +      + A ++   M+  G+   T+T+++L+    +   ++ A+ L+  ML+ G  
Sbjct: 402 DGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVA 461

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFR---SWTLSKTQVALGEDYDG--NTDRISNMEH- 484
           PN   C+ LL    +A + ++A  L++   +  L+K  +      +G     R++  E  
Sbjct: 462 PNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEEL 521

Query: 485 KDKQSITNTPNFVPNS--HYSSFD------------------KRFSFKPTTTTYNILMKA 524
            D+      P   P+S  + + FD                  +   F P+   +N  +  
Sbjct: 522 LDRMKELRCP---PDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITG 578

Query: 525 --CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
                 +++V  + +EM   GLSPN +++  LI      GN+  A    F
Sbjct: 579 HFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYF 628



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 126/302 (41%), Gaps = 29/302 (9%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           +Y D     V+ ++ +     + +A  L   L V+  M K+G    + S N LL     +
Sbjct: 140 VYRDFTFSAVSFDLLL---RAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQS 196

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G+  +A  +YG+++     GVL  D FT + + K +        A++  E+M   G+  N
Sbjct: 197 GDPGMAAMVYGQMR---IAGVLP-DEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVN 252

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            + + ++++     G  E A  + E + + G  PN     +L++   +  + + A R+ +
Sbjct: 253 LVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVK 312

Query: 458 ----SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
               +  +   +VA G   +G   R   M+  D   + N        H + F        
Sbjct: 313 EMKETGDIVVDEVAYGMMINGYCQR-GRMD--DATRVRNEMRDA-GIHVNLF-------- 360

Query: 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ-C 570
               YN ++   C       V+ ++ EM  VG+ P+  S+  LID     G++  A + C
Sbjct: 361 ---VYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMC 417

Query: 571 RF 572
           R 
Sbjct: 418 RM 419



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 6/186 (3%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P+ +   ++I  C   G   ++ ++ + + S  +T NI  +NSL+     +  L   + +
Sbjct: 733 PDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNL 792

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  +Q  G+  +  +YN L+   C  G T    E +   + +  +G+ +  V TYS ++ 
Sbjct: 793 FNKLQSKGISPNGITYNTLIDEYCKEGKTT---EAFKLKQKMVEEGI-QPTVITYSILIY 848

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
                 + + A+K+ + M+   V PN IT+ +LI+    +G +E+   L++EM   G  P
Sbjct: 849 GLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLP 908

Query: 432 NSQCCN 437
            +   N
Sbjct: 909 TNWIGN 914


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 135/327 (41%), Gaps = 54/327 (16%)

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           SAL+     +   + PN+ +  TIID  G+C D                         L+
Sbjct: 133 SALKLLRMIEDRSTRPNVVMYNTIID--GLCKD------------------------KLV 166

Query: 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358
           N  A+DL      Y  M   G+  ++ +Y+ L+   CLAG  +   E +G +  +  K +
Sbjct: 167 N-EAYDL------YSEMDARGIFPNVITYSTLIYGFCLAGQLM---EAFGLLNEMILKNI 216

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
              +V+TY+ ++         + A  +   M   GV PN +++++L++     G V+ A 
Sbjct: 217 -NPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAK 275

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478
            +F  M+Q G  PN    NI++    ++ + D A  L R   L K  V     Y    D 
Sbjct: 276 QMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLRE-VLHKNMVPNTVTYSSLIDG 334

Query: 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT-TTTYNILMKACCTDYY--RVKAL 535
              +       IT+  + +   ++         +P    TY  L+ A C +    +  AL
Sbjct: 335 FCKL-----GRITSALDLLKEMYHRG-------QPADVVTYTSLLDALCKNQNLDKATAL 382

Query: 536 MNEMRTVGLSPNHISWTILIDA-CGGS 561
             +M+  G+ PN  ++T LID  C G 
Sbjct: 383 FMKMKERGIQPNKYTYTALIDGLCKGG 409



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 130/341 (38%), Gaps = 65/341 (19%)

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNI 329
           Y  + ++++ ++ + +  +++  N L+N   H   + F+  V   + KLG   +  + N 
Sbjct: 26  YPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNT 85

Query: 330 LLKACCLAG---------NTVLAQE-----------IYGEVKHLEAKGVLKL-------- 361
           L+K  CL G         + V+AQ            + G  K  E +  LKL        
Sbjct: 86  LMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRS 145

Query: 362 ---DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
              +V  Y+TI+      K    A  +  +M + G+ PN IT+S+LI     AG + +A 
Sbjct: 146 TRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAF 205

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT--------LSKTQVALGE 470
            L  EM+     PN     IL+ A  +  +   A  L    T        +S   +  G 
Sbjct: 206 GLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGY 265

Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
              G       M H   Q   N                    P   +YNI++   C    
Sbjct: 266 CLIGEVQNAKQMFHTMVQKGVN--------------------PNVYSYNIMIDRLCKS-K 304

Query: 531 RVKALMNEMRTV---GLSPNHISWTILIDACGGSGNVEGAL 568
           RV   MN +R V    + PN ++++ LID     G +  AL
Sbjct: 305 RVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSAL 345



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 8/208 (3%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLE 310
           +PN+Y    ++D     G   +++ +   +  + V  N+  +N+LM+      +++   +
Sbjct: 217 NPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQ 276

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           ++  M + GV  ++ SYNI++   C +     A  +  EV H   K ++  +  TYS+++
Sbjct: 277 MFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLH---KNMVP-NTVTYSSLI 332

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAGC 429
             F        AL + ++M   G   + +T++SL++A C N  L ++A  LF +M + G 
Sbjct: 333 DGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNL-DKATALFMKMKERGI 391

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFR 457
           +PN      L+    +  +   A +LF+
Sbjct: 392 QPNKYTYTALIDGLCKGGRHKNAQKLFQ 419



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/205 (19%), Positives = 89/205 (43%), Gaps = 6/205 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
            PN+    T++D   + G+   ++ ++  +  + V  N+Y +N +++    +  +   + 
Sbjct: 252 KPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMN 311

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + + +    ++ +  +Y+ L+   C  G    A ++  E+ H         DV TY++++
Sbjct: 312 LLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPA----DVVTYTSLL 367

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 +    A  +   M   G+ PN  T+++LI+     G  + A  LF+ +L  GC 
Sbjct: 368 DALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCR 427

Query: 431 PNSQCCNILLQACVEACQFDRAFRL 455
            N    N+++    +    D A  +
Sbjct: 428 INVWTYNVMISGLCKEGMLDEALAM 452



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 101/208 (48%), Gaps = 6/208 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LE 310
           +PN+Y    +ID         ++  +  ++  +N+  N   ++SL++      + T  L+
Sbjct: 287 NPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALD 346

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + K M   G  AD+ +Y  LL A C   N   A  ++ ++K    +G+ + + +TY+ ++
Sbjct: 347 LLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKE---RGI-QPNKYTYTALI 402

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                    + A K+ + +L  G   N  T++ +I+     G++++A+ +  +M + GC 
Sbjct: 403 DGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCI 462

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRS 458
           P++    I++++  E  Q D+A +L   
Sbjct: 463 PDAVTFEIIIRSLFEKDQNDKAEKLLHE 490


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 107/269 (39%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+ + + G  A +  +NIL+   C  G+  +AQ ++  +     K  L+  V 
Sbjct: 123 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI----TKWGLRPSVV 178

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          ++K  ML++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 179 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEM 238

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  +++   LS+                     
Sbjct: 239 LVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKX-MLSQ--------------------- 276

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
                                    S  P   TYN L+   C   D  +   L++EM   
Sbjct: 277 -------------------------SLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMK 311

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+  ++T LID C   G+++ A + R
Sbjct: 312 GLKPDKFTYTTLIDGCCKEGDLDTAFKHR 340



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 127/294 (43%), Gaps = 24/294 (8%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++++++ +    +  ++  +N+LMN  +   DL     +   M   GV  D+ +Y
Sbjct: 156 GDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 215

Query: 328 NILLKACCLAGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           ++L+   C       A E++ E  VK L   GV      T++T++          +A+++
Sbjct: 216 SVLINGLCKESKMDDANELFDEMLVKGLIPNGV------TFTTLIXGHCKNGRVDLAMEI 269

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + MLS  + P+ IT+++LI      G ++QA  L +EM   G +P+      L+  C +
Sbjct: 270 YKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCK 329

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
               D AF+  +       ++    D    T  IS +  + +         V        
Sbjct: 330 EGDLDTAFKHRKRMIQGNIRL----DDVAYTALISGLCQEGRS--------VDAEKMLRE 377

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
                 KP   TY +++   C   D ++   L+ EM+  G  P+ +++ +L++ 
Sbjct: 378 MLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 128/313 (40%), Gaps = 20/313 (6%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
           C  P +   F   +  F K  D+  A   +DA  K    P++    T+++     GD  +
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
              +   + +  V  ++Y ++ L+N    + K     E++  M   G++ +  ++  L+ 
Sbjct: 196 GFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIX 255

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             C  G   LA EIY   K + ++ +L  D+ TY+T++         + A  + ++M   
Sbjct: 256 GHCKNGRVDLAMEIY---KXMLSQSLLP-DLITYNTLIYGLCKKGDLKQAHXLIDEMSMK 311

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDR 451
           G+ P+  T+++LI+ C   G ++ A    + M+Q     +      L+   C E    D 
Sbjct: 312 GLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVD- 370

Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           A ++ R        +++G   D  T  +   E   K  +      +         +R   
Sbjct: 371 AEKMLRE------MLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEM------QRNGH 418

Query: 512 KPTTTTYNILMKA 524
            P+  TYN+LM  
Sbjct: 419 VPSVVTYNVLMNG 431


>gi|410110065|gb|AFV61112.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           citrodora]
          Length = 435

 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 124/252 (49%), Gaps = 6/252 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 47  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 106

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           A+  ++++  V  N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 107 ALISEMKTAGVMPNTASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVY 166

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 167 GQLGMAKEADKLFWGMRKMG----IETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 222

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 223 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 282

Query: 455 LFRSWTLSKTQV 466
           LF+    S  ++
Sbjct: 283 LFQKLRSSGVEI 294



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 132/295 (44%), Gaps = 20/295 (6%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
            +++++R + ++ + Y +++L+     +  F   L   + M++  V  D+  Y+ L++  
Sbjct: 2   GLFDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 61

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
               +   A  I+  +K    +     D+  Y+ ++ VF  AK ++ A  +  +M +AGV
Sbjct: 62  RKLCDYSKAISIFSRLK----RSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGV 117

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            PNT ++S+L+          +A+ +F EM +  C  +   CNI++    +      A +
Sbjct: 118 MPNTASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 177

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
           LF  W + K  +         T+ +S   +   +   +   F    H     +R + +  
Sbjct: 178 LF--WGMRKMGI--------ETNVVSY--NTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 225

Query: 515 TTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             TYN +M       ++ +   L+ EM+  G+ PN I+++ +I   G  G ++ A
Sbjct: 226 VVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRA 280



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/237 (19%), Positives = 109/237 (45%), Gaps = 10/237 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  + + +  + AL  +   ++     ++  C  +IDV G  G   ++  ++  +R
Sbjct: 124 YSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 183

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
              +  N+  +N+L+ V  +A      + +++ MQ+  +  ++ +YN ++    + G T+
Sbjct: 184 KMGIETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM---MIYGKTL 240

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
             ++    ++ ++ +G+ + +  TYSTI+ ++        A  + + + S+GV  + + +
Sbjct: 241 EHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLY 299

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
            ++I A   AGLV  A  L  E+      P     +IL      A + + A  +FR 
Sbjct: 300 QTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHIL----AGAGRIEEATYVFRQ 352



 Score = 38.9 bits (89), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 22/184 (11%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL--------MNVNAHDL 305
           PN     TII + G  G   ++  +++ LRS  V ++  ++ ++        +  +A  L
Sbjct: 259 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRL 318

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
              L+   N+ +   +  +A    + +A  +    + A    GEVK          D+  
Sbjct: 319 LHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDA----GEVK----------DITV 364

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           +  ++ +F+  K +  A++V + M   G  P++   + ++NA      +++A  ++ EM 
Sbjct: 365 FERMIHLFSKYKKYANAVEVFDKMRGLGYFPDSNVIALVLNAYGKLHELDKANDVYMEMQ 424

Query: 426 QAGC 429
           + GC
Sbjct: 425 EVGC 428


>gi|297736717|emb|CBI25753.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 9/208 (4%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
           P+      +ID  G  G+   +  +Y+  R++   ++   F++L+ +      F   L V
Sbjct: 244 PDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNV 303

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           Y+ M+ LGV  ++  YN LL A   A     A+ IY E+ +      L+    TY+ +++
Sbjct: 304 YEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTN----NGLQPSWGTYAALLR 359

Query: 372 VFADAKWWQMALKVKEDMLSAG---VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
            +  A++ + AL V ++M   G     P++ T+SSLI   + +G V +A  +   ML+AG
Sbjct: 360 AYGRARYAEDALIVYKEMKEKGSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAG 419

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
            EPN      L+Q   +A + D   R F
Sbjct: 420 FEPNIFVLTSLIQCYGKANRTDEVVRTF 447



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 106/228 (46%), Gaps = 3/228 (1%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           D+ +   +  +G+  ++  AL+ YD ++      +     T+I + G+ G++     +YE
Sbjct: 246 DVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYE 305

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++++  V  N+ ++N+L++    A        +YK M   G+     +Y  LL+A   A 
Sbjct: 306 EMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRAR 365

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A  +Y E+K  +  G    D +T+S+++ +++ +     A  +   ML AG  PN 
Sbjct: 366 YAEDALIVYKEMKE-KGSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNI 424

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
              +SLI     A   ++ +  F+ +L+    P+ + C  +L    ++
Sbjct: 425 FVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFCGCMLNVMTQS 472



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 145/329 (44%), Gaps = 52/329 (15%)

Query: 239 SALRAYDASKKHLSSPNMYICRTI-IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           +AL A+   +K L      I   + + V   C +  ++  +++++  + V  +   F+++
Sbjct: 158 TALLAFGFFRKRLKPSREVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTI 217

Query: 298 MN---VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           ++   V++   K  +E ++ M + G   D  +Y+ ++ A   AGN  +A ++Y   +  +
Sbjct: 218 ISCARVSSLPNK-AVEWFEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEK 276

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
                ++D  T+ST+++++  +  +   L V E+M + GV PN + +++L++A   A   
Sbjct: 277 ----WRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRP 332

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG 474
            QA ++++EM   G +P+      LL+A   A   + A  +++                 
Sbjct: 333 WQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYK----------------- 375

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA 534
                   E K+K S     N +P+S        ++F    T Y     +C       +A
Sbjct: 376 --------EMKEKGS----GNCMPDS--------WTFSSLITIY-----SCSGKVSEAEA 410

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGN 563
           ++N M   G  PN    T LI  C G  N
Sbjct: 411 MLNAMLEAGFEPNIFVLTSLIQ-CYGKAN 438



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 38/221 (17%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +V  Y+  +KVF   +    A K+ ++ML  GV P+ IT+S++I+    + L  +A+  F
Sbjct: 175 EVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWF 234

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-----RSWTLSKTQVA-------LG 469
           E+M + GC P+    + ++ A   A   D A +L+       W +     +       + 
Sbjct: 235 EKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMS 294

Query: 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CT 527
            ++DG  +    M                        K    KP    YN L+ A     
Sbjct: 295 GNFDGCLNVYEEM------------------------KALGVKPNLVIYNTLLDAMGRAK 330

Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             ++ K +  EM   GL P+  ++  L+ A G +   E AL
Sbjct: 331 RPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDAL 371


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 22/297 (7%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMA 322
           G+C  G +     + +D+ S+ +  N+  FN L++V   +  L+   E+YK M   G+  
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 331

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           ++ +YN L+   C+      A  +      L  +     D+ T+++++K +   K     
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNML----DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 387

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +KV  ++   G+  N +T+S L+     +G ++ A  LF+EM+  G  P+     ILL  
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDG 447

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
             +  + ++A  +F    L K+++ LG      T  I  M    K  + +  N      +
Sbjct: 448 LCDNGKLEKALEIFED--LQKSKMDLG--IVMYTTIIEGMCKGGK--VEDAWNL-----F 496

Query: 503 SSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
            S   +   KP   TY +++   C      +A  L+ +M   G +PN  ++  LI A
Sbjct: 497 CSLPCK-GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 32/290 (11%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           ++  +NS++N    + D    L++ + M++  V AD+ +Y+ ++ + C  G    A  ++
Sbjct: 192 DVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLF 251

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
              K +E KG+ K  V TY+++V+    A  W     + +DM+S  + PN IT++ L++ 
Sbjct: 252 ---KEMETKGI-KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK---- 463
               G +++A  L++EM+  G  PN    N L+       +   A  +      +K    
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 464 --TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
             T  +L + Y     R+      D   +           + +  KR        TY+IL
Sbjct: 368 IVTFTSLIKGY-CMVKRVD-----DGMKV-----------FRNISKR-GLVANAVTYSIL 409

Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           ++  C        + L  EM + G+ P+ +++ IL+D    +G +E AL+
Sbjct: 410 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE 459



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 141/343 (41%), Gaps = 92/343 (26%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----------NA 302
           PN+     ++DV    G   ++  +Y+++ ++ ++ NI  +N+LM+            N 
Sbjct: 296 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 355

Query: 303 HDL-----------KFT---------------LEVYKNMQKLGVMADMASYNILLKACCL 336
            DL            FT               ++V++N+ K G++A+  +Y+IL++  C 
Sbjct: 356 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 415

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           +G   LA+E++ E   + + GVL  DV TY  ++    D    + AL++ ED+  + +  
Sbjct: 416 SGKIKLAEELFQE---MVSHGVLP-DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDL 471

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             + ++++I      G VE A +LF  +   G +PN     +++              L 
Sbjct: 472 GIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISG------------LC 519

Query: 457 RSWTLSKTQVALGE-DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           +  +LS+  + L + + DGN                                     P  
Sbjct: 520 KKGSLSEANILLRKMEEDGNA------------------------------------PND 543

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILID 556
            TYN L++A     D      L+ EM++ G S +  S  ++ID
Sbjct: 544 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 90/232 (38%), Gaps = 26/232 (11%)

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K LE  G+   +++T + ++  F        A  V   ++  G  P+T T+++LI     
Sbjct: 112 KQLELNGIAH-NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFL 170

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS----------WT 460
            G V +A+ L + M++ GC+P+    N ++     +     A  L R           +T
Sbjct: 171 EGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFT 230

Query: 461 LSKTQVALGED--YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF---DKRFSFK--- 512
            S    +L  D   D        ME K  +S   T N +      +    D     K   
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290

Query: 513 -----PTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
                P   T+N+L+     +        L  EM T G+SPN I++  L+D 
Sbjct: 291 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG 342



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 13/205 (6%)

Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           I V G C  G    +  +++++ S  V  ++  +  L++   +   L+  LE+++++QK 
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 467

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
            +   +  Y  +++  C  G    A  ++     L  KGV K +V TY+ ++        
Sbjct: 468 KMDLGIVMYTTIIEGMCKGGKVEDAWNLFC---SLPCKGV-KPNVMTYTVMISGLCKKGS 523

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A  +   M   G  PN  T+++LI A    G +  +  L EEM   G   ++    +
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 583

Query: 439 LLQACVEACQFDRAFRLFRSWTLSK 463
           ++   + A +     RL   + LSK
Sbjct: 584 VIDMLLSAMK-----RLTLRYCLSK 603


>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
 gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
          Length = 319

 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 141/309 (45%), Gaps = 29/309 (9%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
           P+      ++D     G   +++ I + +  + V  N   ++SLMN  +  + +    +V
Sbjct: 8   PDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEARKV 67

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
           +  M   G + D+ SYNIL+  CC A     A++I+ E+     +G++  +  TY+T++ 
Sbjct: 68  FNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSF---RGLIP-NTATYNTLLG 123

Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
            F     W+  +++ +DM + G +P+ +T+S  ++  +  G ++QA+ LF EM      P
Sbjct: 124 GF-----WKQKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNP 178

Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
           +    NIL+ A  ++ + + A  LF    +      L  D    T  IS +  +      
Sbjct: 179 DLVIYNILIDAMCKSGKLEDARELFLKLHVK----GLLPDVRSWTSIISGLCREG----- 229

Query: 492 NTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPN 547
                + +  Y +F +  R    P   +YN++++    +    R + L  EM   G S +
Sbjct: 230 -----LLDEAYKAFRQMERDGCPPDCCSYNVIVRGFLQNNGASRAEQLFQEMFDRGFSAD 284

Query: 548 HISWTILID 556
            ++ T+  D
Sbjct: 285 ALTRTLAAD 293



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 39/222 (17%)

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
           ++  D  T++ +V           A  + + M+  GV PNT+T+SSL+N       V +A
Sbjct: 5   IIMPDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEA 64

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
             +F  M+  GC P+    NIL+  C +A + D A ++F   +                 
Sbjct: 65  RKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSF---------------- 108

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS--FK--------PTTTTYNILMKACCT 527
                    +  I NT  +  N+    F K+    FK        P   TY+I +     
Sbjct: 109 ---------RGLIPNTATY--NTLLGGFWKQKIQLFKDMHAQGCSPDLVTYSIFLHGLSK 157

Query: 528 DYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
             Y  +A  L  EM+   L+P+ + + ILIDA   SG +E A
Sbjct: 158 QGYLDQALELFREMQNNYLNPDLVIYNILIDAMCKSGKLEDA 199


>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 680

 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 137/297 (46%), Gaps = 20/297 (6%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLK 332
           +  +++++R + +  + Y +++L+     +  F   L   + M++  V  D+  Y+ L++
Sbjct: 176 AHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIE 235

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
                 +   A  I+  +K    +  +  D+  Y++++ V+  AK ++ A  + ++M  A
Sbjct: 236 LSRRLCDYSKAISIFSRLK----RSGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEA 291

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           GV+PNT+++S+L++         +A+ +F EM +  C  +   CNI++    +      A
Sbjct: 292 GVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEA 351

Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
            RLF  W+L K  +           R+        ++I          H     +R   +
Sbjct: 352 DRLF--WSLRKMDIEPNVVSYNTILRVYGEAELFGEAI----------HLFRLMQRKDIE 399

Query: 513 PTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
               TYN ++K      ++ +   L+ EM++ G+ PN I+++ +I   G +G ++ A
Sbjct: 400 QNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRA 456



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 122/247 (49%), Gaps = 6/247 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +L+ N +    +  D   A+  +   K+   +P++    ++I+V G    + ++R + ++
Sbjct: 228 VLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFKEARVLIKE 287

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +    V+ N   +++L++V   + KF   L V+  M+++    D+ + NI++        
Sbjct: 288 MNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDM 347

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A  ++  ++ ++    ++ +V +Y+TI++V+ +A+ +  A+ +   M    +  N +
Sbjct: 348 VKEADRLFWSLRKMD----IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVV 403

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++++I         E+A +L +EM   G EPN+   + ++    +A + DRA  LF+  
Sbjct: 404 TYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKL 463

Query: 460 TLSKTQV 466
             S  ++
Sbjct: 464 RSSGVEI 470



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 98/200 (49%), Gaps = 7/200 (3%)

Query: 246 ASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD 304
           A  K ++ P ++  C  +IDV G      ++  ++  LR  ++  N+  +N+++ V    
Sbjct: 321 AEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEA 380

Query: 305 LKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
             F   + +++ MQ+  +  ++ +YN ++K   + G T+  ++    V+ ++++G+ + +
Sbjct: 381 ELFGEAIHLFRLMQRKDIEQNVVTYNTMIK---IYGKTMEHEKATNLVQEMQSRGI-EPN 436

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
             TYSTI+ ++  A     A  + + + S+GV  + + + ++I A    GL+  A  L  
Sbjct: 437 AITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLH 496

Query: 423 EMLQAGCEPNSQCCNILLQA 442
           E+      P      IL +A
Sbjct: 497 ELKLPDNIPRETAITILAKA 516



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 99/235 (42%), Gaps = 31/235 (13%)

Query: 210 AIRYACIVPRADI-----LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID 264
           AI    ++ R DI      +   ++ +GK  +   A       +     PN     TII 
Sbjct: 386 AIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIIS 445

Query: 265 VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--------NAHDLKFTLEVYKNMQ 316
           + G  G   ++  +++ LRS  V ++  ++ +++          +A  L   L++  N+ 
Sbjct: 446 IWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIP 505

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIY--GEVKHLEAKGVLKLDVFTYSTIVKVFA 374
           +        +  IL KA      T + ++ +  GEVK          D+  +  ++ +++
Sbjct: 506 R------ETAITILAKAGSTEEATWVFRQAFESGEVK----------DISVFGCMINLYS 549

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
             + +   ++V E M +AG  P++   + ++NA       E+A  ++ EM + GC
Sbjct: 550 RNQRYVNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQREFEKADTVYREMQEEGC 604


>gi|255661144|gb|ACU25741.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 426

 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 121/243 (49%), Gaps = 6/243 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+    P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  VT N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 275

Query: 455 LFR 457
           LF+
Sbjct: 276 LFQ 278



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGVTPNT ++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRA 273



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 105/231 (45%), Gaps = 6/231 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  FGK+    +AL      ++     ++ +   +I++     DY K+ +I+  L+
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
                 ++  +N+++NV   A   +    +   M+  GV  + ASY+ LL         +
Sbjct: 72  RSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  ++ E++ ++      LD+ T + ++ V+      + A K+   M   G+ PN +++
Sbjct: 132 EALSVFAEMREIKC----LLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           ++L+    +A L  +A+HLF  M +   E N    N ++    +  + ++A
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  +  ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++   
Sbjct: 212 RKNIEQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKV 267

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S+GV  + + + ++I A   AGLV  A  L  E+ +    P++   
Sbjct: 268 GKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPR 323

Query: 437 NILLQACVEACQFDRAFRLFRS 458
           +I +     A + + A  +FR 
Sbjct: 324 DIAIHILAGAGRIEEATWVFRQ 345


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 105/269 (39%), Gaps = 53/269 (19%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
            K     Y+   + G  A +  +NIL    C  G+  +AQ ++  +     K  L+  V 
Sbjct: 123 FKLVWGFYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAI----TKWGLRPSVV 178

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           +Y+T++  +          K+K  M ++GV P+  T+S LIN       ++ A  LF+EM
Sbjct: 179 SYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEM 238

Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
           L  G  PN      L+    +  + D A  ++                            
Sbjct: 239 LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY---------------------------- 270

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             KQ ++                  S  P   TYN L+   C   D  +   L++EM   
Sbjct: 271 --KQMLSQ-----------------SLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMK 311

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
           GL P+ I++T LID C   G+++ A + R
Sbjct: 312 GLKPDKITYTTLIDGCCKEGDLDTAFEHR 340



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 127/294 (43%), Gaps = 24/294 (8%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           GD   ++++++ +    +  ++  +N+LMN  +   DL    ++   M   GV  D+ +Y
Sbjct: 156 GDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTY 215

Query: 328 NILLKACCLAGNTVLAQEIYGE--VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           ++L+   C       A E++ E  VK L   GV      T++T++          +A+++
Sbjct: 216 SVLINGLCKESKMDXANELFDEMLVKGLVPNGV------TFTTLIDGHCKNGRVDLAMEI 269

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            + MLS  + P+ IT+++LI      G + QA  L +EM   G +P+      L+  C +
Sbjct: 270 YKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCK 329

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
               D AF   +       ++    D    T  IS +  + +         V        
Sbjct: 330 EGDLDTAFEHRKRMIQENIRL----DDVAYTALISGLCQEGRS--------VDAEKMMRE 377

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
                 KP T TY +++   C   D  +   L+ EM+  G +P+ +++ +L++ 
Sbjct: 378 MLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLMNG 431



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 145/357 (40%), Gaps = 33/357 (9%)

Query: 219 RADI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
           R+DI +F   +  + +   L  A+  Y  +++H        CR +++       +     
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAVECYRLTREHKFWLPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
            YE+        ++Y FN L +      D++    V+  + K G+   + SYN L+    
Sbjct: 129 FYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+     E +     + A GV   DV+TYS ++           A ++ ++ML  G+ 
Sbjct: 189 RLGDL---DEGFKLKSAMHASGVXP-DVYTYSVLINGLCKESKMDXANELFDEMLVKGLV 244

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           PN +T+++LI+     G V+ AM ++++ML     P+    N L+    +    ++A  L
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDL 304

Query: 456 FRSWT---LSKTQVALGEDYDG---NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
               +   L   ++      DG     D  +  EH+ +    N                 
Sbjct: 305 IDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQEN----------------- 347

Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
             +     Y  L+   C +   V A  +M EM +VGL P+  ++T++I+     G+V
Sbjct: 348 -IRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDV 403



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 10/193 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
           PN     T+ID  G C  G    +  IY+ + SQ++  ++  +N+L+       DL    
Sbjct: 245 PNGVTFTTLID--GHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAH 302

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           ++   M   G+  D  +Y  L+  CC  G+   A E     K +  + + +LD   Y+ +
Sbjct: 303 DLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFE---HRKRMIQENI-RLDDVAYTAL 358

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+  +MLS G+ P+T T++ +IN     G V +   L +EM   G 
Sbjct: 359 ISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGH 418

Query: 430 EPNSQCCNILLQA 442
            P+    N+L+  
Sbjct: 419 APSVVTYNVLMNG 431


>gi|21553611|gb|AAM62704.1| unknown [Arabidopsis thaliana]
          Length = 463

 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 121/281 (43%), Gaps = 30/281 (10%)

Query: 185 RLPVKELDEEFRIVQLCVN---KPD---VNLAIRYACIVPRADILFCNFVREFGKKRDLV 238
           R P   +    R++ L VN   +PD    ++A+R  C   R D           + +DL+
Sbjct: 134 RAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVD-----------EAKDLM 182

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSL 297
             L     ++KH S P+ Y    ++     C D        +++R   +V  ++  F  L
Sbjct: 183 KEL-----TEKH-SPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTIL 236

Query: 298 MN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++   N+ +L+  + +   +   G   D   YN ++K  C         E  G  K ++ 
Sbjct: 237 IDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSK---GSEAVGVYKKMKE 293

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +GV + D  TY+T++   + A   + A    + M+ AG  P+T T++SL+N     G   
Sbjct: 294 EGV-EPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESL 352

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            A+ L EEM   GC PN    N LL    +A   D+   L+
Sbjct: 353 GALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELY 393



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 13/181 (7%)

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M++ G+ P+ +T    + +    G V++A  L +E+ +    P++   N LL+   +   
Sbjct: 150 MVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKD 209

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
               +              + +D+D   D +S     D  ++ N+ N     +  S    
Sbjct: 210 LHVVYEFVDE---------MRDDFDVKPDLVSFTILID--NVCNSKNLREAMYLVSKLGN 258

Query: 509 FSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
             FKP    YN +MK  CT     +A  +  +M+  G+ P+ I++  LI     +G VE 
Sbjct: 259 AGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEE 318

Query: 567 A 567
           A
Sbjct: 319 A 319


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 142/326 (43%), Gaps = 36/326 (11%)

Query: 254 PNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTL 309
           PN+    T++   G+C    + ++  +  ++  ++  L+   FN L++    +  +   +
Sbjct: 316 PNVVCYNTVLK--GLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVI 373

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+ + M + G + D+ +Y  ++   C  G   L  E    +K++ A G  K +  +Y+ +
Sbjct: 374 ELLEQMLEHGCIPDVITYTTVINGFCKEG---LVDEAVMLLKNMSACGC-KPNTISYTIV 429

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +K    A+ W  A ++   M+  G  PN +T+++LIN     GLVEQA+ L ++ML  GC
Sbjct: 430 LKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGC 489

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISN 481
            P+    + ++    +A + + A  L            T+  + +A     +G TD+I  
Sbjct: 490 SPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQ 549

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRT 541
           M    + +   +   + N+  SS  KR+                 TD  R       M +
Sbjct: 550 MFDSIQDATVRSDAALYNAVISSLCKRWE----------------TD--RAIDFFAYMVS 591

Query: 542 VGLSPNHISWTILIDACGGSGNVEGA 567
            G  PN  ++TILI      G V  A
Sbjct: 592 NGCMPNESTYTILIRGLASEGLVREA 617



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 116/286 (40%), Gaps = 31/286 (10%)

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           E+   M ++G   ++A++N L+   C  G   L ++++  +  +   G    D+  Y+TI
Sbjct: 234 ELMVEMVRVGCPPNVATFNTLIAYLCRNG---LFEQVHEALSQMPEHGCTP-DLRMYATI 289

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +         ++A  +   M S G+ PN + +++++    +A   E+A  L  EM Q  C
Sbjct: 290 IDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDC 349

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISN 481
             +    NIL+    +    DR   L             ++ T V  G   +G  D  + 
Sbjct: 350 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDE-AV 408

Query: 482 MEHKDKQSITNTPN----------------FVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525
           M  K+  +    PN                +V      S   +    P   T+N L+   
Sbjct: 409 MLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFM 468

Query: 526 CTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           C      +A  L+ +M   G SP+ IS++ +ID  G +G  E AL+
Sbjct: 469 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALE 514



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  + N+++ A C  G      E+   ++ L + G  + D+ +Y+ ++K    AK 
Sbjct: 173 GCTLDSGNCNLVVSAICEQGCVDEGVEL---LRKLPSFGC-EPDIVSYNAVLKGLCMAKR 228

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           W    ++  +M+  G  PN  T+++LI      GL EQ      +M + GC P+
Sbjct: 229 WDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPD 282



 Score = 38.9 bits (89), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 81/250 (32%), Gaps = 56/250 (22%)

Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
           T +  + +   G  A + +YN ++   C AG    A+ +   V        +  + +TY 
Sbjct: 60  TADAARALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVP-------VPPNAYTYF 112

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
            IV+          AL V ++M   G          ++ A    G    A+   + +   
Sbjct: 113 PIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAK 172

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
           GC  +S  CN+++ A  E    D    L R                              
Sbjct: 173 GCTLDSGNCNLVVSAICEQGCVDEGVELLRKL---------------------------- 204

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLS 545
                                F  +P   +YN ++K  C    +  V+ LM EM  VG  
Sbjct: 205 -------------------PSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCP 245

Query: 546 PNHISWTILI 555
           PN  ++  LI
Sbjct: 246 PNVATFNTLI 255


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 20/256 (7%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           + +  LE+ + M + G   D  ++NIL+   C A       ++   ++ L+  GV   +V
Sbjct: 233 NFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDL---LRRLQRDGVCMPNV 289

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY++++  +  A   + AL V  DML +G  PNT+T++ LIN    A  +E A+ ++ +
Sbjct: 290 VTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQ 349

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           ++   C P+    + L+       Q D A R+++       Q         N    S + 
Sbjct: 350 LILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQ--------PNVYTFSIII 401

Query: 484 HK--DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEM 539
           H    +        F+        + R    P T  YN ++   C      +A  ++ +M
Sbjct: 402 HSLCKQNRSAEALGFL-----RELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDM 456

Query: 540 RTVGLSPNHISWTILI 555
              G  P+  ++TILI
Sbjct: 457 EEKGCHPDKYTYTILI 472



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 12/178 (6%)

Query: 292 YVFNSLMNV-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           Y +N+L+N+      A D     E +  +Q      D  S+N+++K  C  GN   A E+
Sbjct: 183 YAYNNLLNLLIARGRAQDAVALFESW--IQDGLYSPDGWSFNVVIKGVCRVGNFQKALEL 240

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TPNTITWSSLI 405
              V+ +   G    D  T++ +V     AK       +   +   GV  PN +T++S+I
Sbjct: 241 ---VERMTEFGC-SPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVI 296

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
           +    AG +E A+ ++ +ML++G  PN+   N+L+    +A   + A R++R   L +
Sbjct: 297 SGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRR 354



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 90/208 (43%), Gaps = 11/208 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           PN+    ++I   G C  G    + ++Y D+       N   +N L+N    A D++  +
Sbjct: 287 PNVVTYTSVIS--GYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAV 344

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
            +Y+ +       D+ +++ L+   C  G    A  I+ E+     +  ++ +V+T+S I
Sbjct: 345 RMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEM----GQHHIQPNVYTFSII 400

Query: 370 VKVFADAKWWQMALK-VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +           AL  ++E  + A + P T  ++ +I+     G VE+A  +  +M + G
Sbjct: 401 IHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKG 460

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
           C P+     IL+       +   A  LF
Sbjct: 461 CHPDKYTYTILIIGHCMKGRIPEAITLF 488



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 15/208 (7%)

Query: 365 TYSTIVKVFADAKWWQMALKVKEDML-SAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
           +YS ++ +   +   + ALK+ + M   +G  P+ + +S +  +C NAGL++ A+ L  +
Sbjct: 113 SYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVTLLTK 172

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
             Q G        N LL   +   +   A  LF SW         G  ++          
Sbjct: 173 ASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVI------- 225

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRT 541
               + +    NF            F   P T T+NIL+   C      R   L+  ++ 
Sbjct: 226 ----KGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQR 281

Query: 542 VGLS-PNHISWTILIDACGGSGNVEGAL 568
            G+  PN +++T +I     +G +E AL
Sbjct: 282 DGVCMPNVVTYTSVISGYCKAGRMEDAL 309


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 142/337 (42%), Gaps = 26/337 (7%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           AL   D   +    P++    T+++   + G   ++  + + +       N   +  ++N
Sbjct: 275 ALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLN 334

Query: 300 V--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
           V   +      +E+ + M++  +  D   Y+I++   C  G+   A  ++ E   +E KG
Sbjct: 335 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE---MEMKG 391

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
           +   ++ TY+ ++  F +A  W    K+  DM+   + PN +T+S LI++    G + +A
Sbjct: 392 ITT-NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREA 450

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
             L +EM+  G  P++     L+    +    D+A ++          V+ G D +  T 
Sbjct: 451 EELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV------DLMVSKGCDPNIRTF 504

Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK---PTTTTYNILMKACCT--DYYRV 532
            I    +     I +              ++ S +     T TYN L++  C        
Sbjct: 505 NILINGYCKANRIDDGLELF---------RKMSLRGVVADTVTYNTLIQGFCELGKLNVA 555

Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           K L  EM +  + PN +++ IL+D    +G  E AL+
Sbjct: 556 KELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALE 592



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 145/350 (41%), Gaps = 62/350 (17%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           FCN     G+  D    LR  D  K+ ++ PN+     +ID     G   ++  +++++ 
Sbjct: 406 FCNA----GRWDDGAKLLR--DMIKRKIN-PNVVTFSVLIDSFVKEGKLREAEELHKEMI 458

Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            + +  +   + SL++     + L    ++   M   G   ++ ++NIL+   C A    
Sbjct: 459 HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRID 518

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
              E++   + +  +GV+  D  TY+T+++ F +     +A ++ ++M+S  V PN +T+
Sbjct: 519 DGLELF---RKMSLRGVVA-DTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 574

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
             L++   + G  E+A+ +FE++ ++  E +    NI++     A + D A+ LF S  L
Sbjct: 575 KILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 634

Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
                                                             KP   TYNI+
Sbjct: 635 K-----------------------------------------------GVKPGVKTYNIM 647

Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           +   C        + L  +M   G +P+  ++ ILI A  G G+   +++
Sbjct: 648 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVK 697



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 26/242 (10%)

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K +E KG+   +++T S ++  F   +   +A      ++  G  PNTIT+S+LIN    
Sbjct: 210 KQMELKGIAH-NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCL 268

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR---SWTLSKTQVA 467
            G V +A+ L + M++ G +P+    N L+     + +   A  L      +      V 
Sbjct: 269 EGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT 328

Query: 468 LGEDYD-----GNT----DRISNMEHKDKQSITNTPNFVPNS--HYSSFDKRFSF----- 511
            G   +     G T    + +  ME ++ +      + + +    + S D  F+      
Sbjct: 329 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME 388

Query: 512 -KPTTT---TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
            K  TT   TYNIL+   C    +     L+ +M    ++PN +++++LID+    G + 
Sbjct: 389 MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLR 448

Query: 566 GA 567
            A
Sbjct: 449 EA 450


>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
 gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
          Length = 735

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 153/395 (38%), Gaps = 63/395 (15%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           +PR    F + +  + +   L SA+R     +K   +P++ IC   ++V  + G   K+ 
Sbjct: 157 MPRGTRQFAHLMLSYSRAGKLRSAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKAL 216

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
              E +R   V  ++  +N L+     A  +   LE+  +M + G + D  SY  ++   
Sbjct: 217 EFAERMRRVGVDPDVVTYNCLIKGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMSFL 276

Query: 335 CLAGNTVLAQE--------------------IYGEVKHLEAKGVL-----------KLDV 363
           C        Q                     I+G  KH  A   L           ++D 
Sbjct: 277 CKEKRVADVQNLLERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDE 336

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
             YS  V  F        A ++  +M+S G  P+ +T+S++++     G ++QA  + + 
Sbjct: 337 VGYSATVHSFCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKH 396

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS-----WT---LSKTQVALGEDYDGN 475
           M + GC+PN+     LL    +  +   A+ L        WT   ++ + V  G   +G 
Sbjct: 397 MYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREG- 455

Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA- 534
                    K K+S       +             F PTT   N+L+ A C +     A 
Sbjct: 456 ---------KLKESCDVVMQMLQK----------GFFPTTVEINLLIHALCNERKPADAK 496

Query: 535 -LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
             M + ++ G   N +++T +I      G++E AL
Sbjct: 497 DFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESAL 531


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 127/325 (39%), Gaps = 55/325 (16%)

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC----LAGNTVL--AQ 344
           +FNSL++   NA D  +  +++  M   G       YNI + + C    L    +L  A+
Sbjct: 343 LFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAE 402

Query: 345 EIYGE--------------------------------VKHLEAKGVLKLDVFTYSTIVKV 372
           ++Y E                                VK +  KG +  D  TY+ ++  
Sbjct: 403 KVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVP-DASTYTKVITF 461

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
              AK    A  + ++M   GV P+  T++ LI++   AGL+EQA   F+EM  AGC PN
Sbjct: 462 LCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPN 521

Query: 433 SQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISNMEH 484
                 LL A +++ Q  +A  +F            ++ + +  G    G   +   +  
Sbjct: 522 VVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYA 581

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTV 542
           K    +  T + + +  Y       +  P   TY  L+   C       A  L++ M   
Sbjct: 582 K----LIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAA 637

Query: 543 GLSPNHISWTILIDACGGSGNVEGA 567
           G  PN I +  L+D     G ++ A
Sbjct: 638 GCEPNQIVYDALVDGFCKVGEIDSA 662



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 152/392 (38%), Gaps = 62/392 (15%)

Query: 188 VKELDEEFRIVQLCVNK---PDVNL---AIRYACIVPRADILFCNFVREFGKKRDLVSAL 241
           V + ++ F+IV+  + K   PD +     I + C   R D  F  F              
Sbjct: 430 VGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLF-------------- 475

Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-- 299
                 KK   +P++Y    +ID     G   ++++ ++++RS   + N+  + +L++  
Sbjct: 476 ---QEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAY 532

Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
           + +  L    +++  M       +  +Y+ L+   C AG    A E+Y ++         
Sbjct: 533 LKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKL--------- 583

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
              + T   I   F             E   +  ++PN +T+ +L+N    A  V  A  
Sbjct: 584 ---IGTSDNIESDF-----------YFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHD 629

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
           L + ML AGCEPN    + L+    +  + D A  +F    L  T+          T  I
Sbjct: 630 LLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVF----LRMTKCGYLPSVHTYTSLI 685

Query: 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMN 537
             M    +  +             S   + S  P   TY  ++   C      KA  L++
Sbjct: 686 DRMFKDGRLDLA--------MKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLS 737

Query: 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            M   G SPN +++T LID  G +G V+  L+
Sbjct: 738 LMEKKGCSPNVVTYTALIDGLGKAGKVDAGLE 769



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 20/195 (10%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--------VNAHDLKFTLEVYKNMQKLGVMA 322
           D ++S   +E   +  ++ N+  + +L+N         +AHDL         M   G   
Sbjct: 588 DNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDL------LDAMLAAGCEP 641

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV-KVFADAKWWQM 381
           +   Y+ L+   C  G    AQE++     +   G L   V TY++++ ++F D +   +
Sbjct: 642 NQIVYDALVDGFCKVGEIDSAQEVF---LRMTKCGYLP-SVHTYTSLIDRMFKDGRL-DL 696

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A+KV   ML     PN +T++++++     G  E+A++L   M + GC PN      L+ 
Sbjct: 697 AMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALID 756

Query: 442 ACVEACQFDRAFRLF 456
              +A + D    LF
Sbjct: 757 GLGKAGKVDAGLELF 771



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 10/198 (5%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           SPN+     +++  G+C     S A  + + + +     N  V+++L++      ++   
Sbjct: 605 SPNVVTYGALVN--GLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSA 662

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            EV+  M K G +  + +Y  L+      G   LA ++  ++     K     +V TY+ 
Sbjct: 663 QEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM----LKDSCNPNVVTYTA 718

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +V         + AL +   M   G +PN +T+++LI+    AG V+  + LF +M   G
Sbjct: 719 MVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKG 778

Query: 429 CEPNSQCCNILLQACVEA 446
           C PN     IL+  C  A
Sbjct: 779 CAPNYVTYRILINHCCAA 796



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 15/224 (6%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           A++      K   +PN+     ++D  G+C  G+  K+  +   +  +  + N+  + +L
Sbjct: 697 AMKVLSQMLKDSCNPNVVTYTAMVD--GLCKTGETEKALNLLSLMEKKGCSPNVVTYTAL 754

Query: 298 MNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++    A  +   LE++  M+  G   +  +Y IL+  CC AG    A  +  E+K    
Sbjct: 755 IDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHW 814

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
              L+     Y T V+ F+  K +  +L + E+M S    P    +  LI++ + AG +E
Sbjct: 815 PKYLQ----GYRTTVQGFS--KRFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLE 868

Query: 416 QAMHLFEEMLQAGCEPNSQCCNI---LLQACVEACQFDRAFRLF 456
            A+ L +EM++     N    ++   L+QA   + Q + A  L+
Sbjct: 869 TALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALY 912



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 114/307 (37%), Gaps = 40/307 (13%)

Query: 294 FNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L+ V  +A  ++    V K M   G   D ++     +A C  G        +G+  
Sbjct: 207 YNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGR-------WGDAL 259

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            L  +   KLD    + ++    +A  +  A+     M      PN +T+ +L+      
Sbjct: 260 DLLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKK 319

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL--- 468
             +     +   M+  GC P+    N L+     A  +  A++LF               
Sbjct: 320 KQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVY 379

Query: 469 --------GEDYDGNTDRISNMEHKDKQSIT--------NTPNFVPN-SHYSSFDKRF-- 509
                   G +   N + +   E   ++ +         NT NF         F+K F  
Sbjct: 380 NIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQI 439

Query: 510 -------SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGG 560
                   F P  +TY  ++   C      KA  L  EM+ VG++P+  ++TILID+   
Sbjct: 440 VKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCK 499

Query: 561 SGNVEGA 567
           +G +E A
Sbjct: 500 AGLIEQA 506



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 97/253 (38%), Gaps = 58/253 (22%)

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N+L++ CCL G    A E  G +K        +    TY+ +V+V A A   +MA +V++
Sbjct: 173 NVLVRRCCLQGLWGEALEELGRLKDFG----YRPSAVTYNALVQVLASAGQVEMAFRVQK 228

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           +M ++G   +  T  S   A    G    A+ L E   +   + ++  C  ++   +EA 
Sbjct: 229 EMSASGFCMDRSTVGSFAQALCKEGRWGDALDLLE---REDFKLDTVLCTQMISGLMEAS 285

Query: 448 QFDRA------------------FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
            F+ A                  +R   +  L K Q+       G   RI NM       
Sbjct: 286 LFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQL-------GWCKRIINM------M 332

Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN 547
           +T   N                 P+ + +N L+   C   DY     L N M T G  P 
Sbjct: 333 MTEGCN-----------------PSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPG 375

Query: 548 HISWTILIDA-CG 559
           ++ + I I + CG
Sbjct: 376 YVVYNIFIGSICG 388



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 10/177 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTL 309
           PN  +   ++D  G C  G+   ++ ++  +       +++ + SL++    D  L   +
Sbjct: 641 PNQIVYDALVD--GFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAM 698

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V   M K     ++ +Y  ++   C  G T  A  +   +  +E KG    +V TY+ +
Sbjct: 699 KVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNL---LSLMEKKGC-SPNVVTYTAL 754

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +     A      L++   M + G  PN +T+  LIN C  AGL++ A  L +EM Q
Sbjct: 755 IDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQ 811


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 116/559 (20%), Positives = 218/559 (38%), Gaps = 82/559 (14%)

Query: 59  LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVAS 118
           L S  R+ LS     Y  +     KDGR+EE   +V+ +        K    + ++ VA 
Sbjct: 276 LESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEM--------KETGDIVVDEVAY 327

Query: 119 GIVKS--IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVG 176
           G++ +   + GR+D    V  ++ + G+  + LF      +       L   G +E    
Sbjct: 328 GMMINGYCQRGRMDDATRVRNEMRDAGIH-VNLF------VYNTMINGLCKLGRMEEVQK 380

Query: 177 LMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-----ADILFCNFVREF 231
           +++ +E+  +   +      I   C  +  +  A     ++ R       + +   ++ F
Sbjct: 381 VLQEMEDVGMRPDKYSYNTLIDGYC-REGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGF 439

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
                +  ALR +    K   +PN   C T++D     G   ++  ++++  ++ +  N+
Sbjct: 440 CSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNV 499

Query: 292 YVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349
             FN+++N       +    E+   M++L    D  +Y  L    C  G    A  +  +
Sbjct: 500 ITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNK 559

Query: 350 VKHLE-AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
           ++HL  A  V   + F     +     AK W     +  +M + G++PN +T+ +LI   
Sbjct: 560 MEHLGFAPSVEMFNSFITGHFI-----AKQWHKVNDIHSEMSARGLSPNLVTYGALIAGW 614

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT-------- 460
              G + +A +L+ EM+  G  PN   C+ L+    +  + D A  + +           
Sbjct: 615 CKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGC 674

Query: 461 ------LSKTQVALGEDYDGNTDRISNMEH------------KDKQSITNT---PNFVP- 498
                 + K    +    DGN    + M +             D +S+  +     F+P 
Sbjct: 675 SISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPD 734

Query: 499 NSHYSSF----------DKRFSFK---------PTTTTYNILMKACCTD--YYRVKALMN 537
           N  YSS           D+ FS +         P   TYN L+   C      R   L N
Sbjct: 735 NFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFN 794

Query: 538 EMRTVGLSPNHISWTILID 556
           ++++ G+SPN I++  LID
Sbjct: 795 KLQSKGISPNGITYNTLID 813



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 122/312 (39%), Gaps = 68/312 (21%)

Query: 269 CGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNVN-----AHDLKFTLEVYKNMQKLGVM 321
           C D   ++A+   E++    + +N+  ++++M+         D +  LE   ++Q+ G+ 
Sbjct: 229 CRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILE---SLQRKGLS 285

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            ++ +Y +L+K  C  G    A+ +   VK ++  G + +D   Y  ++  +        
Sbjct: 286 PNVVTYTLLVKGYCKDGRMEEAERV---VKEMKETGDIVVDEVAYGMMINGYCQRGRMDD 342

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A +V+ +M  AG+  N   ++++IN     G +E+   + +EM   G  P+    N L+ 
Sbjct: 343 ATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLID 402

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
                    +AF + R                                            
Sbjct: 403 GYCREGSMRKAFEMCRMMV----------------------------------------- 421

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCT-----DYYRVKALMNEMRTVGLSPNHISWTILID 556
                 R     TT TYN L+K  C+     D  R+  LM +    G++PN IS + L+D
Sbjct: 422 ------RNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKR---GVAPNEISCSTLLD 472

Query: 557 ACGGSGNVEGAL 568
               +G  E AL
Sbjct: 473 GLFKAGKTEQAL 484



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/290 (20%), Positives = 124/290 (42%), Gaps = 35/290 (12%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V   M+  G+  ++  YN ++   C  G     Q++  E++ +     ++ D ++Y+T++
Sbjct: 346 VRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVG----MRPDKYSYNTLI 401

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +      + A ++   M+  G+   T+T+++L+    +   ++ A+ L+  ML+ G  
Sbjct: 402 DGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVA 461

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFR---SWTLSKTQVALGEDYDG--NTDRISNMEH- 484
           PN   C+ LL    +A + ++A  L++   +  L+K  +      +G     R++  E  
Sbjct: 462 PNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEEL 521

Query: 485 KDKQSITNTPNFVPNS--HYSSFD------------------KRFSFKPTTTTYNILMKA 524
            D+      P   P+S  + + FD                  +   F P+   +N  +  
Sbjct: 522 LDRMKELRCP---PDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITG 578

Query: 525 --CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
                 +++V  + +EM   GLSPN +++  LI      GN+  A    F
Sbjct: 579 HFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYF 628



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 126/302 (41%), Gaps = 29/302 (9%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           +Y D     V+ ++ +     + +A  L   L V+  M K+G    + S N LL     +
Sbjct: 140 VYRDFTFSAVSFDLLL---RAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQS 196

Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           G+  +A  +YG+++     GVL  D FT + + K +        A++  E+M   G+  N
Sbjct: 197 GDPGMAAMVYGQMR---IAGVLP-DEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVN 252

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            + + ++++     G  E A  + E + + G  PN     +L++   +  + + A R+ +
Sbjct: 253 LVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVK 312

Query: 458 ----SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
               +  +   +VA G   +G   R   M+  D   + N        H + F        
Sbjct: 313 EMKETGDIVVDEVAYGMMINGYCQR-GRMD--DATRVRNEMRDA-GIHVNLF-------- 360

Query: 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ-C 570
               YN ++   C       V+ ++ EM  VG+ P+  S+  LID     G++  A + C
Sbjct: 361 ---VYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMC 417

Query: 571 RF 572
           R 
Sbjct: 418 RM 419



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 4/129 (3%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           +N+++   C +G    A+ ++   + L  K  L  D FTYS+++   A +     A  ++
Sbjct: 703 WNVIIFGLCKSGRIADAKSLF---ESLRNKRFLP-DNFTYSSLIHGCAASGSIDEAFSLR 758

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           + MLSAG+TPN IT++SLI     +G + +A++LF ++   G  PN    N L+    + 
Sbjct: 759 DVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKE 818

Query: 447 CQFDRAFRL 455
            +   AF+L
Sbjct: 819 GKTTEAFKL 827



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 91/195 (46%), Gaps = 28/195 (14%)

Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLKFTLEVYKNMQKL 318
           + G+C  G    +++++E LR++    + + ++SL++  A     D  F+L     M   
Sbjct: 707 IFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLR--DVMLSA 764

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G+  ++ +YN L+   C +G    A  ++ +   L++KG+   +  TY+T++  +     
Sbjct: 765 GLTPNIITYNSLIYGLCKSGKLSRAVNLFNK---LQSKGI-SPNGITYNTLIDEYCKEGK 820

Query: 379 WQMALKVKEDMLSAG----------------VTPNTITWSSLINACANAGLVEQAMHLFE 422
              A K+K+ M+  G                V PN IT+ +LI+    +G +E+   L++
Sbjct: 821 TTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYD 880

Query: 423 EMLQAGCEPNSQCCN 437
           EM   G  P +   N
Sbjct: 881 EMHIRGLLPTNWIGN 895



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 83/189 (43%), Gaps = 23/189 (12%)

Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
           S NV  N+ +F    +    D K   E  +N +    + D  +Y+ L+  C  +G+    
Sbjct: 698 SANVMWNVIIFGLCKSGRIADAKSLFESLRNKR---FLPDNFTYSSLIHGCAASGSI--- 751

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
            E +  ++ +     L  ++ TY++++     +     A+ +   + S G++PN IT+++
Sbjct: 752 DEAF-SLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNT 810

Query: 404 LINA-CANA---------------GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
           LI+  C                  G +E+A+ L ++M++   +PN      L+   +++ 
Sbjct: 811 LIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSG 870

Query: 448 QFDRAFRLF 456
             +   +L+
Sbjct: 871 NMEEISKLY 879


>gi|255661160|gb|ACU25749.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 426

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 99

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  VT N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 100 SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 159

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 160 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI 215

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + D+A  
Sbjct: 216 EQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAM 275

Query: 455 LFR 457
           LF+
Sbjct: 276 LFQ 278



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGVTPNT ++S+L+          +A+ +F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVF 137

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 189

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R + +    TYN +M       ++ +   L+ EM
Sbjct: 190 L----LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDKA 273



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 106/231 (45%), Gaps = 6/231 (2%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  FGK+    +AL      ++     ++ +   +I++     DY K+ +I+  L+
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
               T ++  +N+++NV   A   +    +   M+  GV  + ASY+ LL         +
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  ++ E++ ++      LD+ T + ++ V+      + A K+   M   G+ PN +++
Sbjct: 132 EALSVFAEMREIKC----LLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           ++L+    +A L  +A+HLF  M +   E N    N ++    +  + ++A
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
           C  +IDV G  G   ++  ++  +R   +  N+  +N+L+ V  +A      + +++ MQ
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           +  +  ++ +YN ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++   
Sbjct: 212 RKNIEQNVVTYNSMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKV 267

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
                A  + + + S+GV  + + + ++I A   AGLV  A  L  E+ +    P++   
Sbjct: 268 GKLDKAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPR 323

Query: 437 NILLQACVEACQFDRAFRLFRS 458
           +I +     A + + A  +FR 
Sbjct: 324 DIAIHILAGAGRIEEATWVFRQ 345


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 123/275 (44%), Gaps = 31/275 (11%)

Query: 204 KPDV---NLAIRYACIVPRAD--ILFCNFVREFGKK----------RDLVSALRAYDASK 248
           KPDV   N+ I   C   R D  I F N +  +G +          R + S  R  DA K
Sbjct: 279 KPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEK 338

Query: 249 ------KHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNV 300
                 +   SP++     +I+   +C   +  RAI   E +     T N   +N L++ 
Sbjct: 339 FLAEMIRKGCSPSVVTFNILINF--LCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHA 396

Query: 301 NAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358
              D K    +E    M   G   D+ +YN LL A C  G   +A EI   +  L +KG 
Sbjct: 397 LCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEI---LNQLGSKGC 453

Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM 418
             + + TY+T++   +       A+K+ ++M   G+ P+ IT+S+L+   +  G V++A+
Sbjct: 454 SPV-LITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAI 512

Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             F ++ + G +PN+   N ++    +A Q  RA 
Sbjct: 513 AFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAI 547



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 115/261 (44%), Gaps = 21/261 (8%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V + ++  G + D+ +YN+L+   C  G         G    L  +  +  DV TY+TI+
Sbjct: 167 VMEILEDSGAVPDVITYNVLISGYCKTGEI-------GSALQLLDRMSVSPDVVTYNTIL 219

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
           +   D+   + A++V +  +     P+ IT++ LI A      V QAM L +EM   GC+
Sbjct: 220 RTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCK 279

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
           P+    N+L+    +  + D A R                 Y    + I++  +   +S+
Sbjct: 280 PDVVTYNVLINGICKEGRLDEAIRFLNHMP----------SYGCQPNVITH--NIILRSM 327

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNH 548
            +T  ++    + +   R    P+  T+NIL+   C      +A+  + +M   G +PN 
Sbjct: 328 CSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNS 387

Query: 549 ISWTILIDACGGSGNVEGALQ 569
           +S+  L+ A      +E A++
Sbjct: 388 LSYNPLLHALCKDKKMERAIE 408



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 53/263 (20%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +++   M+  G   D+ +YN+L+   C  G      E    + H+ + G  + +V T++ 
Sbjct: 267 MKLLDEMRDKGCKPDVVTYNVLINGICKEGRL---DEAIRFLNHMPSYGC-QPNVITHNI 322

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           I++       W  A K   +M+  G +P+ +T++ LIN     GL+ +A+ + E+M Q G
Sbjct: 323 ILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHG 382

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           C PNS   N LL A  +  + +RA                             +E+ D  
Sbjct: 383 CTPNSLSYNPLLHALCKDKKMERA-----------------------------IEYLDI- 412

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
                   V    Y          P   TYN L+ A C D     A  ++N++ + G SP
Sbjct: 413 -------MVSRGCY----------PDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSP 455

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
             I++  +ID     G  + A++
Sbjct: 456 VLITYNTVIDGLSKVGKTDDAIK 478



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 131/323 (40%), Gaps = 31/323 (9%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           ++  + +++R +    ++  +N L+N       L   +    +M   G   ++ ++NI+L
Sbjct: 265 QAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIIL 324

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           ++ C  G  + A++   E+     KG     V T++ ++           A+ V E M  
Sbjct: 325 RSMCSTGRWMDAEKFLAEMIR---KGC-SPSVVTFNILINFLCRKGLIGRAIDVLEKMPQ 380

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G TPN+++++ L++A      +E+A+   + M+  GC P+    N LL A  +  + D 
Sbjct: 381 HGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDV 440

Query: 452 AFRLFRSWT--------LSKTQVALGEDYDGNTDR----ISNMEHKD-KQSITNTPNFVP 498
           A  +             ++   V  G    G TD     +  M+ K  K  I      V 
Sbjct: 441 AVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVG 500

Query: 499 N-SHYSSFDKRFSF---------KPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
             S     D+  +F         KP   TYN +M   C     V+A+  +  M   G  P
Sbjct: 501 GLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKP 560

Query: 547 NHISWTILIDACGGSGNVEGALQ 569
              S+ ILI+     G  + AL+
Sbjct: 561 TETSYMILIEGLAYEGLAKEALE 583


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 162/382 (42%), Gaps = 68/382 (17%)

Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLN 290
           ++ D+ SA+  Y    K   +PN  I  T+ID  G C    + +++ ++ ++    V   
Sbjct: 268 QRDDVNSAVVLYQELLKSGLNPNAVIFTTLID--GFCKAKRFSEAKGMFLEMPRFGVAPT 325

Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI-- 346
           + V+NSLM+    + + +  L +Y+ M +LG+  D  + +I+++  C  G   +A     
Sbjct: 326 VPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQ 385

Query: 347 --------------------YGEVKHLE---------AKGVLKLDVFTYSTIVKVFADAK 377
                               Y  + +LE          +  ++ +V +YS+++   +   
Sbjct: 386 GVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRG 445

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
             Q+A+ +  +M++ G+ PN +T+++LI+  A  G ++ A  L +EM++ G  PN+   +
Sbjct: 446 KMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVS 505

Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
           +L+       +   A R    ++        G          SN   +++  I N+  ++
Sbjct: 506 VLVDGLCRENRVQEAVRFVMEYS--------GLKCSDIHSVFSNFTIEEECLIPNSVIYM 557

Query: 498 P-------NSHYSSFDKRFSFK------PTTTTYNILMKACCTDYYRVKALM--NEMRTV 542
                   +  +    K FS+       P + TY +L++  C   Y + A+M   +M  +
Sbjct: 558 TLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMMLYADMMKI 617

Query: 543 GLSPNHI--------SWTILID 556
           G+ P           SW  L D
Sbjct: 618 GVKPTRYKIECPEIWSWAPLND 639



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 152/357 (42%), Gaps = 35/357 (9%)

Query: 225 CNFVRE-FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           CN V +   K R    A   +D   +    P++    T+I+ C   G   K++ +++ + 
Sbjct: 154 CNAVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMV 213

Query: 284 SQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
           +Q +  N+  + +++     +  +     ++  M++ G+  +  +YN+L+   C   +  
Sbjct: 214 AQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVN 273

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A  +Y E+     K  L  +   ++T++  F  AK +  A  +  +M   GV P    +
Sbjct: 274 SAVVLYQEL----LKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVY 329

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
           +SL++    +G  ++A+ L++EM + G  P+   C+I+++   +  Q   A R  +   +
Sbjct: 330 NSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQG--V 387

Query: 462 SKTQVAL-GEDYDGNTD---RISNMEHKDKQSITNT-----PNFVPNSHYSSFDKRFSFK 512
            +  V L    Y+   D   RI N+E         T     PN V    YSS     S +
Sbjct: 388 QEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVV---SYSSLIDGHSKR 444

Query: 513 PTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
                  I M           A+  EM   G+ PN +++T LI     +G ++ A +
Sbjct: 445 ---GKMQIAM-----------AIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFR 487


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 131/309 (42%), Gaps = 43/309 (13%)

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
           V+N L+NV      +K    VY  M   G+  D+ ++N L+KA C A     A  +   +
Sbjct: 56  VYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLM---L 112

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           + + ++GV   D  T++T+++ F +    + AL+VK  ML  G +   +T + LIN    
Sbjct: 113 EEMSSRGVAP-DETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCK 171

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
            G VE A+   ++ +  G EP+    N  +      CQ D    +  +  +    V  G 
Sbjct: 172 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGL---CQND---HVGHALKVMDVMVQEGH 225

Query: 471 DYDGNTDRI------SNMEHKDKQSITNT-------PNFVP-----------NSHYSSFD 506
           D D  T  I       N + ++ + I N        P+              N    + D
Sbjct: 226 DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALD 285

Query: 507 --KRFSFK---PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
             ++ + K   P   T+NIL+ A C   D +    L  EM+  G +P+ +++  LID   
Sbjct: 286 LARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLC 345

Query: 560 GSGNVEGAL 568
             G +  AL
Sbjct: 346 SLGKLGKAL 354



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 126/298 (42%), Gaps = 27/298 (9%)

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
            + I +      +T N +V N L   N H +   L+V   M + G   D+ +YNI++   
Sbjct: 183 QQEIADGFEPDQITYNTFV-NGLCQ-NDH-VGHALKVMDVMVQEGHDPDVFTYNIVVNCL 239

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C  G     +E  G +  +  +G L  D+ T++T++         + AL +   +   GV
Sbjct: 240 CKNGQL---EEAKGILNQMVDRGCLP-DITTFNTLIAALCTGNRLEEALDLARQVTVKGV 295

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
           +P+  T++ LINA    G    A+ LFEEM  +GC P+    N L+       +  +A  
Sbjct: 296 SPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALD 355

Query: 455 LFR---SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511
           L +   S    ++ +      DG   ++   E ++               +   D +   
Sbjct: 356 LLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEV--------------FDQMDLQ-GI 400

Query: 512 KPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
                T+N L+   C D     A  L+N+M + GL PN+I++  ++      G+++ A
Sbjct: 401 SRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKA 458



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 111/267 (41%), Gaps = 31/267 (11%)

Query: 311 VYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +   +Q L G+ AD   YN LL          L + +Y E   + A+G+ K DV T++T+
Sbjct: 40  ILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSE---MGARGI-KPDVVTFNTL 95

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +K    A   + A+ + E+M S GV P+  T+++L+      G +E A+ +   ML+ GC
Sbjct: 96  MKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGC 155

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
                  N+L+      C+  R         L   Q  + + ++   D+I+         
Sbjct: 156 SATKVTVNVLING---YCKLGRV-----EDALGYIQQEIADGFE--PDQITYN------- 198

Query: 490 ITNTPNFVPNSHYSSFDK------RFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRT 541
            T       N H     K      +    P   TYNI++   C +      K ++N+M  
Sbjct: 199 -TFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVD 257

Query: 542 VGLSPNHISWTILIDACGGSGNVEGAL 568
            G  P+  ++  LI A      +E AL
Sbjct: 258 RGCLPDITTFNTLIAALCTGNRLEEAL 284



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 118/264 (44%), Gaps = 24/264 (9%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +   M   G + D+ ++N L+ A C  GN +  +E     + +  KGV   DV+T++ ++
Sbjct: 251 ILNQMVDRGCLPDITTFNTLIAALC-TGNRL--EEALDLARQVTVKGV-SPDVYTFNILI 306

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                     +AL++ E+M ++G TP+ +T+++LI+   + G + +A+ L ++M   GC 
Sbjct: 307 NALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCP 366

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTL---SKTQVALGEDYDGNTDRISNMEHKDK 487
            ++   N ++    +  + + A  +F    L   S+  +      DG          KDK
Sbjct: 367 RSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLC--------KDK 418

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLS 545
           + I +    + N   S        +P   TYN ++   C   D  +   ++  M   G  
Sbjct: 419 K-IDDAFELI-NQMISE-----GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFE 471

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
            + +++  LI+    +G  + AL+
Sbjct: 472 VDVVTYGTLINGLCKAGRTQVALK 495



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/321 (19%), Positives = 130/321 (40%), Gaps = 56/321 (17%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SP++Y    +I+     GD   +  ++E++++   T +   +N+L++   +   L   L+
Sbjct: 296 SPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALD 355

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + K+M+  G      +YN ++   C       A+E++     ++ +G+ + +  T++T++
Sbjct: 356 LLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVF---DQMDLQGISR-NAITFNTLI 411

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 K    A ++   M+S G+ PN IT++S++      G +++A  + E M   G E
Sbjct: 412 DGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFE 471

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
            +      L+    +A +   A ++ R                    RI  M        
Sbjct: 472 VDVVTYGTLINGLCKAGRTQVALKVLRGM------------------RIKGM-------- 505

Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNH 548
                                +PT   YN ++++     +     +L  EM  VG  P+ 
Sbjct: 506 ---------------------RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDA 544

Query: 549 ISWTILIDA-CGGSGNVEGAL 568
           +++ I+    C G G ++ A 
Sbjct: 545 LTYKIVFRGLCRGGGPIKEAF 565



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 16/217 (7%)

Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNV 287
           + GK  DL+  + +    +  ++        TIID  G+C       A  +++ +  Q +
Sbjct: 349 KLGKALDLLKDMESTGCPRSTITY------NTIID--GLCKKMRIEEAEEVFDQMDLQGI 400

Query: 288 TLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
           + N   FN+L++    D K     E+   M   G+  +  +YN +L   C  G+   A +
Sbjct: 401 SRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAAD 460

Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
           I   ++ + A G  ++DV TY T++     A   Q+ALKV   M   G+ P    ++ ++
Sbjct: 461 I---LETMTANG-FEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVL 516

Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            +      +  A+ LF EM + G  P++    I+ + 
Sbjct: 517 QSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRG 553



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           ALR ++  K    +P+     T+ID     G   K+  + +D+ S     +   +N++++
Sbjct: 318 ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIID 377

Query: 300 VNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
                ++     EV+  M   G+  +  ++N L+   C       A E+   +  + ++G
Sbjct: 378 GLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFEL---INQMISEG 434

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
            L+ +  TY++I+  +      + A  + E M + G   + +T+ +LIN    AG  + A
Sbjct: 435 -LQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVA 493

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           + +   M   G  P  +  N +LQ+         A  LFR  
Sbjct: 494 LKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREM 535


>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
          Length = 762

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 33/330 (10%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           T+I + G    +   R + +++ S +    +  +N +++    A+ L+  ++V++ MQK 
Sbjct: 371 TMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKA 430

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  +Y  L+      G   +A ++Y  ++ +     L  D FTYS +V        
Sbjct: 431 GYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVG----LSPDTFTYSAMVNCLGKGGH 486

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A K+  +M+  G TPN +T++ +I   A A   E  + L+++M  AG  P+    +I
Sbjct: 487 LAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSI 546

Query: 439 LLQACVEACQFDRAFRLF----RSWTLSKTQVALGEDY---DGNTDRISNMEHKDKQSIT 491
           +++        D A  +F      W   +    L  D     GN D+     H   Q   
Sbjct: 547 VMEVLGHCGHLDEAEAVFIEMRHDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGL 606

Query: 492 NTPNFVP--NSHYSSFDKRFSFK---------------PTTTTYNILMKACCTDYYRVKA 534
             PN VP  NS  S+F K   F+               P+  TY +L+ +CCT+      
Sbjct: 607 Q-PN-VPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLL-SCCTEAQAQMG 663

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           L  ++  +   P H+    L DA  G  NV
Sbjct: 664 LCCQLMAITGHPAHMFLLYLPDAEPGGQNV 693



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 130/306 (42%), Gaps = 25/306 (8%)

Query: 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214
           F+ LK +     D       +G++    +F    K LDE   +   C  KP V       
Sbjct: 353 FQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSV--HC--KPTV------- 401

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
                  + +   +  +G+   L  A++ ++  +K    P+     T+ID+    G    
Sbjct: 402 -------VTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEV 454

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +  +Y  ++   ++ + + +++++N       L    +++  M + G   ++ +YNI++ 
Sbjct: 455 AMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIA 514

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
               A N     ++Y   K ++  G  + D  TYS +++V         A  V  +M   
Sbjct: 515 LQAKARNYENVVKLY---KDMQVAG-FRPDKITYSIVMEVLGHCGHLDEAEAVFIEM-RH 569

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
              P+   +  L++    AG V++A+  +  MLQ G +PN   CN LL A ++  +F  A
Sbjct: 570 DWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDA 629

Query: 453 FRLFRS 458
           + + ++
Sbjct: 630 YSVLQN 635



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 140/339 (41%), Gaps = 60/339 (17%)

Query: 249 KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN--VTLNIYVFNSLMNVNAHDLK 306
           ++LS+P MY            G   KS+A+   ++S       N+    SL +V  +   
Sbjct: 262 QNLSAPAMYT-----------GSGHKSQALAGTIKSHGGGPQSNLRSLKSLRSVEQY--Y 308

Query: 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA-----QEIYGEVKHLEAKGVLKL 361
            TL+  K +   G + D    N+  K      N VL          G  + L+ +   K 
Sbjct: 309 HTLQQMKWVPMTGHVLD----NLHCKIDAFQANQVLKLLHDHTIALGFFQWLKRQPGFKH 364

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D  +Y+T++ +   A+ +    K+ ++M S    P  +T++ +I+A   A  + +A+ +F
Sbjct: 365 DGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVF 424

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDR 478
           EEM +AG EP+      L+    +    + A  L+        +V L  D   Y    + 
Sbjct: 425 EEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLY----TRMQEVGLSPDTFTYSAMVNC 480

Query: 479 ISNMEHKDK------QSITN--TPNFVPNSHYSSFDKRFSFKPTTTTYNIL--MKACCTD 528
           +    H         + + N  TPN V                   TYNI+  ++A   +
Sbjct: 481 LGKGGHLAAAYKLFCEMVENGCTPNLV-------------------TYNIMIALQAKARN 521

Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
           Y  V  L  +M+  G  P+ I+++I+++  G  G+++ A
Sbjct: 522 YENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEA 560


>gi|18398498|ref|NP_565422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75146596|sp|Q84J71.1|PP161_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17670
 gi|28393395|gb|AAO42121.1| unknown protein [Arabidopsis thaliana]
 gi|28973597|gb|AAO64123.1| unknown protein [Arabidopsis thaliana]
 gi|330251570|gb|AEC06664.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 463

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 121/281 (43%), Gaps = 30/281 (10%)

Query: 185 RLPVKELDEEFRIVQLCVN---KPD---VNLAIRYACIVPRADILFCNFVREFGKKRDLV 238
           R P   +    R++ L VN   +PD    ++A+R  C   R D           + +DL+
Sbjct: 134 RAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVD-----------EAKDLM 182

Query: 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSL 297
             L     ++KH S P+ Y    ++     C D        +++R   +V  ++  F  L
Sbjct: 183 KEL-----TEKH-SPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTIL 236

Query: 298 MN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++   N+ +L+  + +   +   G   D   YN ++K  C         E  G  K ++ 
Sbjct: 237 IDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSK---GSEAVGVYKKMKE 293

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
           +GV + D  TY+T++   + A   + A    + M+ AG  P+T T++SL+N     G   
Sbjct: 294 EGV-EPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESL 352

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
            A+ L EEM   GC PN    N LL    +A   D+   L+
Sbjct: 353 GALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELY 393



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 117/280 (41%), Gaps = 37/280 (13%)

Query: 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI 222
           + L ++G V+    LM+ L E   P       F +  LC  K   +L + Y  +    D 
Sbjct: 167 RSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCK---DLHVVYEFVDEMRD- 222

Query: 223 LFCNFVREFGKKRDLVSALRAYD--ASKKHLSS--------------PNMYICRTIIDVC 266
                  +F  K DLVS     D   + K+L                P+ ++  TI+   
Sbjct: 223 -------DFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMK-- 273

Query: 267 GICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G C     S A+  Y+ ++ + V  +   +N+L+     A  ++      K M   G   
Sbjct: 274 GFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEP 333

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D A+Y  L+   C  G ++ A  +  E   +EA+G    D  TY+T++     A+     
Sbjct: 334 DTATYTSLMNGMCRKGESLGALSLLEE---MEARGCAPNDC-TYNTLLHGLCKARLMDKG 389

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           +++ E M S+GV   +  +++L+ +   +G V +A  +F+
Sbjct: 390 MELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVFD 429



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 13/181 (7%)

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           M++ G+ P+ +T    + +    G V++A  L +E+ +    P++   N LL+   +   
Sbjct: 150 MVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKD 209

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
               +              + +D+D   D +S     D  ++ N+ N     +  S    
Sbjct: 210 LHVVYEFVDE---------MRDDFDVKPDLVSFTILID--NVCNSKNLREAMYLVSKLGN 258

Query: 509 FSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
             FKP    YN +MK  CT     +A  +  +M+  G+ P+ I++  LI     +G VE 
Sbjct: 259 AGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEE 318

Query: 567 A 567
           A
Sbjct: 319 A 319


>gi|449459510|ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
 gi|449530101|ref|XP_004172035.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
          Length = 680

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 126/275 (45%), Gaps = 47/275 (17%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           +L+ N +    K  D   A+  +   K+   +P++    T+I+V G    + ++R + ++
Sbjct: 230 VLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDIVAYNTMINVFGKAKLFREARFLLKE 289

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF------------------------TLEVYKN--- 314
           +R+ +V  +   +++L+N+   + KF                         ++VY     
Sbjct: 290 MRAVDVMPDTVSYSTLLNMFVENEKFLEALSVISEMKEVNCPLDLTTCNIMIDVYGQLDM 349

Query: 315 ----------MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL---EAKGVLKL 361
                     M+K+G+  ++ SYN +L+    A       E++GE  HL     +  +K 
Sbjct: 350 VKEADRLFWRMRKIGIEPNVVSYNTILRVYGEA-------ELFGEAIHLFRLMQRKEIKQ 402

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +V TY+T++K++      + A  + +DM   G+ PN IT+S++I+    AG ++++  LF
Sbjct: 403 NVVTYNTMIKIYGKTLEHEKATNLVQDMQKRGIEPNAITYSTIISIWGKAGKLDRSAMLF 462

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +++  +G E +      ++ A  +A     A RL 
Sbjct: 463 QKLRSSGAEIDQVLYQTMIVAYEKAGLVGHAKRLL 497



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/319 (19%), Positives = 140/319 (43%), Gaps = 20/319 (6%)

Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--T 308
           L +P++Y    ++        +  +  +++++R + +  + Y +++L+     +  F   
Sbjct: 154 LYTPSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAADRYTYSTLITYFGKEGMFDAA 213

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           L   + M++  V  D+  Y+ L++      +   A  I+  +K    +  +  D+  Y+T
Sbjct: 214 LSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLK----RSGITPDIVAYNT 269

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++ VF  AK ++ A  + ++M +  V P+T+++S+L+N         +A+ +  EM +  
Sbjct: 270 MINVFGKAKLFREARFLLKEMRAVDVMPDTVSYSTLLNMFVENEKFLEALSVISEMKEVN 329

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           C  +   CNI++    +      A RLF  W + K  +           R+        +
Sbjct: 330 CPLDLTTCNIMIDVYGQLDMVKEADRLF--WRMRKIGIEPNVVSYNTILRVYGEAELFGE 387

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSP 546
           +I          H     +R   K    TYN ++K      ++ +   L+ +M+  G+ P
Sbjct: 388 AI----------HLFRLMQRKEIKQNVVTYNTMIKIYGKTLEHEKATNLVQDMQKRGIEP 437

Query: 547 NHISWTILIDACGGSGNVE 565
           N I+++ +I   G +G ++
Sbjct: 438 NAITYSTIISIWGKAGKLD 456



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 129/279 (46%), Gaps = 39/279 (13%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +  FGK+    +AL      ++   S ++ +   +I++     DY K+ +I+  L+
Sbjct: 197 YSTLITYFGKEGMFDAALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLK 256

Query: 284 SQNVTLNIYVFNSLMNVNA-----HDLKFTLEVYKNMQKLGVMADMASYNILLKACC--- 335
              +T +I  +N+++NV        + +F L   K M+ + VM D  SY+ LL       
Sbjct: 257 RSGITPDIVAYNTMINVFGKAKLFREARFLL---KEMRAVDVMPDTVSYSTLLNMFVENE 313

Query: 336 --LAGNTVLAQ-----------------EIYGEVKHLEA---------KGVLKLDVFTYS 367
             L   +V+++                 ++YG++  ++          K  ++ +V +Y+
Sbjct: 314 KFLEALSVISEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWRMRKIGIEPNVVSYN 373

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           TI++V+ +A+ +  A+ +   M    +  N +T++++I         E+A +L ++M + 
Sbjct: 374 TILRVYGEAELFGEAIHLFRLMQRKEIKQNVVTYNTMIKIYGKTLEHEKATNLVQDMQKR 433

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           G EPN+   + ++    +A + DR+  LF+    S  ++
Sbjct: 434 GIEPNAITYSTIISIWGKAGKLDRSAMLFQKLRSSGAEI 472



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 93/190 (48%), Gaps = 6/190 (3%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVY 312
           ++  C  +IDV G      ++  ++  +R   +  N+  +N+++ V      F   + ++
Sbjct: 333 DLTTCNIMIDVYGQLDMVKEADRLFWRMRKIGIEPNVVSYNTILRVYGEAELFGEAIHLF 392

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
           + MQ+  +  ++ +YN ++K   + G T+  ++    V+ ++ +G+ + +  TYSTI+ +
Sbjct: 393 RLMQRKEIKQNVVTYNTMIK---IYGKTLEHEKATNLVQDMQKRGI-EPNAITYSTIISI 448

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +  A     +  + + + S+G   + + + ++I A   AGLV  A  L  E+ Q    P 
Sbjct: 449 WGKAGKLDRSAMLFQKLRSSGAEIDQVLYQTMIVAYEKAGLVGHAKRLLHELKQPDNIPR 508

Query: 433 SQCCNILLQA 442
           +    IL +A
Sbjct: 509 TTAITILAKA 518



 Score = 45.1 bits (105), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 43/235 (18%), Positives = 99/235 (42%), Gaps = 10/235 (4%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           +   +R +G+      A+  +   ++     N+    T+I + G   ++ K+  + +D++
Sbjct: 372 YNTILRVYGEAELFGEAIHLFRLMQRKEIKQNVVTYNTMIKIYGKTLEHEKATNLVQDMQ 431

Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
            + +  N   +++++++   A  L  +  +++ ++  G   D   Y  ++ A   AG   
Sbjct: 432 KRGIEPNAITYSTIISIWGKAGKLDRSAMLFQKLRSSGAEIDQVLYQTMIVAYEKAGLVG 491

Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
            A+ +  E+K        + D    +T + + A A   + A  V      AG   +   +
Sbjct: 492 HAKRLLHELK--------QPDNIPRTTAITILAKAGRIEEATWVFRQAFDAGELKDISVF 543

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             +I+  +     +  + +FE+M   G  PNS    ++L A  +   FD A  L+
Sbjct: 544 ECMIDLFSRNKKHKNVLEVFEKMRNVGHFPNSDVIALVLNAYGKLRDFDTADALY 598



 Score = 42.0 bits (97), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 90/212 (42%), Gaps = 14/212 (6%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   ++ +GK  +   A       +K    PN     TII + G  G   +S  +++ 
Sbjct: 405 VTYNTMIKIYGKTLEHEKATNLVQDMQKRGIEPNAITYSTIISIWGKAGKLDRSAMLFQK 464

Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           LRS    ++  ++ +++     A  +     +   +++   +    +  IL KA  +   
Sbjct: 465 LRSSGAEIDQVLYQTMIVAYEKAGLVGHAKRLLHELKQPDNIPRTTAITILAKAGRIEEA 524

Query: 340 TVLAQEIY--GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
           T + ++ +  GE+K          D+  +  ++ +F+  K  +  L+V E M + G  PN
Sbjct: 525 TWVFRQAFDAGELK----------DISVFECMIDLFSRNKKHKNVLEVFEKMRNVGHFPN 574

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +   + ++NA       + A  L+ EM + GC
Sbjct: 575 SDVIALVLNAYGKLRDFDTADALYMEMQEEGC 606


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 138/328 (42%), Gaps = 41/328 (12%)

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNI 329
           Y ++  + +++R +  T +I  +N ++N    + +    +E  KN+   G   +  SYNI
Sbjct: 209 YKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNI 268

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           +LK  C A     A+E+ GE+     KG    +V T++ ++         + AL+V E +
Sbjct: 269 VLKGLCTAERWEDAEELMGEMGQ---KGCPP-NVVTFNMLISFLCRKGLVEPALEVLEQI 324

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
              G TPN+++++ L++A      +++AM   + M+  GC P+    N LL A   + + 
Sbjct: 325 PKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEV 384

Query: 450 DRAFRLFRSWT--------LSKTQVALGEDYDGNT----DRISNMEHKDKQSITNTPNFV 497
           D A  L             +S   V  G    G T    + ++ M  K  Q     P+ +
Sbjct: 385 DVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ-----PDII 439

Query: 498 PNSHYS--------------SFDK--RFSFKPTTTTYNILMKACCT--DYYRVKALMNEM 539
             S  +              +F K      +P T  YN ++   C   + +    L   M
Sbjct: 440 TYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYM 499

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
              G  PN  ++TILI+     G ++ A
Sbjct: 500 IGNGCMPNESTYTILIEGLAYEGLIKEA 527



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 14/217 (6%)

Query: 245 DASKKHLSS----PNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLM 298
           DA+++ ++     P+ Y   T+I   G+CG    + A  + +++  +    ++  +  L+
Sbjct: 143 DAARRLVAEMPVEPDAYTYNTLIR--GLCGRGRTANALAVLDEMLRRRCVPDVVTYTILL 200

Query: 299 NVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                    K  +++   M+  G   D+ +YN+++   C  G    A E    +K+L + 
Sbjct: 201 EATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEF---LKNLPSY 257

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  + +  +Y+ ++K    A+ W+ A ++  +M   G  PN +T++ LI+     GLVE 
Sbjct: 258 GC-EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEP 316

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           A+ + E++ + GC PNS   N LL A  +  + D+A 
Sbjct: 317 ALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAM 353



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 100/249 (40%), Gaps = 56/249 (22%)

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+ +YN ++   C AG    A+ +  E+        ++ D +TY+T+++          A
Sbjct: 125 DVMAYNAMVAGYCGAGQLDAARRLVAEMP-------VEPDAYTYNTLIRGLCGRGRTANA 177

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           L V ++ML     P+ +T++ L+ A       +QAM L +EM   GC P+    N+++  
Sbjct: 178 LAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNG 237

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
             +  + D A    +                                  N P+       
Sbjct: 238 ICQEGRVDDAIEFLK----------------------------------NLPS------- 256

Query: 503 SSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560
                 +  +P T +YNI++K  CT   +   + LM EM   G  PN +++ +LI     
Sbjct: 257 ------YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 310

Query: 561 SGNVEGALQ 569
            G VE AL+
Sbjct: 311 KGLVEPALE 319



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 122/287 (42%), Gaps = 47/287 (16%)

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           ++ V  D  +YN L++  C  G T  A  +  E+  L  + V   DV TY+ +++     
Sbjct: 151 EMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEM--LRRRCVP--DVVTYTILLEATCKR 206

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
             ++ A+K+ ++M   G TP+ +T++ ++N     G V+ A+   + +   GCEPN+   
Sbjct: 207 SGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSY 266

Query: 437 NILLQACVEACQFDRA------------------FRLFRSWTLSKTQVALGEDYDGNTDR 478
           NI+L+    A +++ A                  F +  S+   K  V            
Sbjct: 267 NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLV---------EPA 317

Query: 479 ISNMEHKDKQSIT-NTPNFVPNSH----YSSFDKRFSF---------KPTTTTYNILMKA 524
           +  +E   K   T N+ ++ P  H        DK  +F          P   +YN L+ A
Sbjct: 318 LEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 377

Query: 525 CC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            C   +      L+++++  G +P  IS+  +ID    +G  + AL+
Sbjct: 378 LCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 424



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 11/172 (6%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           D M SR  Y D+ S N  L     +  ++V        +E+   ++  G    + SYN +
Sbjct: 357 DLMVSRGCYPDIVSYNTLLTALCRSGEVDV-------AVELLHQLKDKGCAPVLISYNTV 409

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +     AG T  A E+  E   + +KG L+ D+ TYSTI          + A++    + 
Sbjct: 410 IDGLTKAGKTKEALELLNE---MVSKG-LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQ 465

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
             G+ PNT+ ++++I           A+ LF  M+  GC PN     IL++ 
Sbjct: 466 DMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEG 517


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 101/227 (44%), Gaps = 33/227 (14%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +P+ Y    +I     CG   K+  I+ ++R   V  ++  + +++        +   +E
Sbjct: 394 APDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 453

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV-------------------- 350
            +  M   GV  D  +YN L++  C  G+ + A+E+  E+                    
Sbjct: 454 KFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLC 513

Query: 351 ---KHLEAKGVLKL--------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              + ++A+ +  L        D   Y+ ++  +      + AL+V + M+SAG+ PN +
Sbjct: 514 KLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV 573

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
            + +L+N     G +++ + LF EMLQ G +P++   +I++    EA
Sbjct: 574 GYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEA 620



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 149/356 (41%), Gaps = 32/356 (8%)

Query: 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--V 300
           A  A    + SP  +    ++D C        + A +  L    + +NI + N L+    
Sbjct: 101 ASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFC 160

Query: 301 NAHDLKFTLEVY-KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
            A      L++      +LG + D+ SY+ILLK+ C  G +  A ++   +   E   V 
Sbjct: 161 EAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA--EGGAVC 218

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             +V  Y+T++  F        A  + ++M+  G+ P+ +T++S+++A   A  +++A  
Sbjct: 219 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 278

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW----------TLSKTQVAL- 468
              +M+     PN+   N L+       Q+  A R+F+            TLS    +L 
Sbjct: 279 FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 338

Query: 469 --GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS---------FDKRF--SFKPTT 515
             G+  +   D    M  K +     + N + N + +          FD        P  
Sbjct: 339 KYGKIKEAR-DVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDF 397

Query: 516 TTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            T+N+L+KA   C    +   + NEMR  G+ P+ +++  +I A    G ++ A++
Sbjct: 398 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 453



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 134/310 (43%), Gaps = 36/310 (11%)

Query: 216 IVPRADILFCNFVREFGKKRDLVS----------------ALRAYDASKKHLSSPNMYIC 259
           ++ +A I+F N +R+ G K D+V+                A+  ++       +P+ Y  
Sbjct: 412 MLDKAMIIF-NEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 470

Query: 260 RTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE---VYKN 314
             +I   G C  G  +K++ +  ++ +  + L+I  F+S++N N   L   ++   ++  
Sbjct: 471 NCLIQ--GFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIIN-NLCKLGRVMDAQNIFDL 527

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
              +G+  D   YN+L+   CL G    A  ++  +        ++ +V  Y T+V  + 
Sbjct: 528 TVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAM----VSAGIEPNVVGYGTLVNGYC 583

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                   L +  +ML  G+ P+TI +S +I+    AG    A   F EM ++G   +  
Sbjct: 584 KIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDIC 643

Query: 435 CCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG--NTDRISNMEHKDKQS 489
             NI+L+   +   FD A  LF   R+  +    + L    DG   T R+   E KD  +
Sbjct: 644 TYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVE--EAKDLFA 701

Query: 490 ITNTPNFVPN 499
             +    VP+
Sbjct: 702 SISRSRLVPS 711



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 136/322 (42%), Gaps = 31/322 (9%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+ A    + ++ V  N + +N+L+    +    K  + V+K M++  ++ D+ + ++L+
Sbjct: 275 KAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 334

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            + C  G    A++++     +  KG    DVF+Y+ ++  +A          + + ML 
Sbjct: 335 GSLCKYGKIKEARDVF---DTMAMKGQ-NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLG 390

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+ P+  T++ LI A AN G++++AM +F EM   G +P+      ++ A     + D 
Sbjct: 391 DGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDD 450

Query: 452 AFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQS-ITNTPNFVPNSHYSS--- 504
           A   F       ++  + A      G     S ++ K+  S I N    +    +SS   
Sbjct: 451 AMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIIN 510

Query: 505 --------------FD--KRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
                         FD        P    YN+LM   C      KAL   + M + G+ P
Sbjct: 511 NLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEP 570

Query: 547 NHISWTILIDACGGSGNVEGAL 568
           N + +  L++     G ++  L
Sbjct: 571 NVVGYGTLVNGYCKIGRIDEGL 592



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 105/217 (48%), Gaps = 10/217 (4%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           ALR +DA       PN+    T+++  G C  G   +  +++ ++  + +  +  +++ +
Sbjct: 556 ALRVFDAMVSAGIEPNVVGYGTLVN--GYCKIGRIDEGLSLFREMLQRGIKPSTILYSII 613

Query: 298 MN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++    A         +  M + G+  D+ +YNI+L+   L  N    + I+   K L A
Sbjct: 614 IDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG--LFKNRCFDEAIF-LFKELRA 670

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
             V K+++ T +T++      +  + A  +   +  + + P+ +T+S +I      GLVE
Sbjct: 671 MNV-KINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVE 729

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           +A  +F  M  AGCEPNS+  N +++  ++  +  RA
Sbjct: 730 EAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRA 766


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 135/322 (41%), Gaps = 30/322 (9%)

Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
           S P++    T+I+     GD  K+ + Y ++  + +  ++  +NS++     A  +   +
Sbjct: 192 SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAM 251

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           EV   M K GVM D  +YN +L   C +G     +E  G +K + + GV + DV TYS +
Sbjct: 252 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQ---PKEAIGFLKKMRSDGV-EPDVVTYSLL 307

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
           +           A K+ + M   G+ P   T+ +L+   A  G + +   L + M++ G 
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 367

Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYD--GNTDRISNMEH 484
            P+    +IL+ A  +  + D+A  +F   R   L+   V  G        + R+ +   
Sbjct: 368 HPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 427

Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542
             +Q I                      P    YN L+   CT   + R + L+ EM   
Sbjct: 428 YFEQMIDE-----------------GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDR 470

Query: 543 GLSPNHISWTILIDACGGSGNV 564
           G+  N I +  +ID+    G V
Sbjct: 471 GICLNTIFFNSIIDSHCKEGRV 492



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 119/249 (47%), Gaps = 10/249 (4%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           IL C + ++ GK   +  A+  +   ++   +PN      +I +    G    +   +E 
Sbjct: 376 ILICAYAKQ-GK---VDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 431

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + ++    V+NSL++     +  +   E+   M   G+  +   +N ++ + C  G 
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 491

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            + +++++     L  +  +K +V TY+T++  +  A     A+K+   M+S G+ PNT+
Sbjct: 492 VIESEKLF----ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTV 547

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T+S+LIN       +E A+ LF+EM  +G  P+    NI+LQ   +  +   A  L+   
Sbjct: 548 TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 607

Query: 460 TLSKTQVAL 468
           T S TQ+ L
Sbjct: 608 TESGTQIEL 616



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 134/309 (43%), Gaps = 24/309 (7%)

Query: 267 GICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVM 321
           G C       AI   + +RS  V  ++  ++ LM+    N   ++   +++ +M K G+ 
Sbjct: 275 GYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCME-ARKIFDSMTKRGLK 333

Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
            ++ +Y  LL+     G  V   E++G +  +   G+   D + +S ++  +A       
Sbjct: 334 PEITTYGTLLQGYATKGALV---EMHGLLDLMVRNGI-HPDHYVFSILICAYAKQGKVDQ 389

Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
           A+ V   M   G+ PN +T+ ++I     +G VE AM  FE+M+  G  P +   N L+ 
Sbjct: 390 AMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 449

Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
                 +++RA  L     +    + L   +    + I +   K+ + I +   F     
Sbjct: 450 GLCTCNKWERAEELI--LEMLDRGICLNTIF---FNSIIDSHCKEGRVIESEKLF----- 499

Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACG 559
                 R   KP   TYN L+   C      +A  L++ M +VGL PN ++++ LI+   
Sbjct: 500 --ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 557

Query: 560 GSGNVEGAL 568
               +E AL
Sbjct: 558 KISRMEDAL 566



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 114/268 (42%), Gaps = 31/268 (11%)

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK---GVLKLDVFTYS 367
           V + M +LG + ++ SYNILLK  C    +  A E+     H+ A    G    DV +Y+
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELL----HMMADDRGGGSPPDVVSYT 200

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           T++  F        A     +ML  G+ P+ +T++S+I A   A  +++AM +   M++ 
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN 260

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ-----VALGEDYDGNTDRISNM 482
           G  P+    N +L     + Q   A    +       +      +L  DY     R   M
Sbjct: 261 GVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRC--M 318

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK--ALMNEMR 540
           E +                + S  KR   KP  TTY  L++   T    V+   L++ M 
Sbjct: 319 EAR--------------KIFDSMTKR-GLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 363

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGAL 568
             G+ P+H  ++ILI A    G V+ A+
Sbjct: 364 RNGIHPDHYVFSILICAYAKQGKVDQAM 391



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 103/211 (48%), Gaps = 6/211 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           SP   +  ++I     C  + ++  +  ++  + + LN   FNS+++ +  + +   + +
Sbjct: 438 SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 497

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           +++ M ++GV  ++ +YN L+   CLAG    A ++   +  +     LK +  TYST++
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG----LKPNTVTYSTLI 553

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +      + AL + ++M S+GV+P+ IT++ ++           A  L+  + ++G +
Sbjct: 554 NGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQ 613

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
                 NI+L    +    D A ++F++  L
Sbjct: 614 IELSTYNIILHGLCKNKLTDDALQMFQNLCL 644



 Score = 45.8 bits (107), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 97/213 (45%), Gaps = 6/213 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I F + +    K+  ++ + + ++   +    PN+    T+I+   + G   ++  +   
Sbjct: 477 IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + S  +  N   +++L+N       ++  L ++K M+  GV  D+ +YNI+L+       
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 596

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
           T  A+E+Y  V+  E+   ++L   TY+ I+      K    AL++ +++    +     
Sbjct: 597 TAAAKELY--VRITESGTQIELS--TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEAR 652

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           T++ +I+A    G  ++A  LF      G  PN
Sbjct: 653 TFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685


>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Glycine max]
          Length = 587

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 140/319 (43%), Gaps = 35/319 (10%)

Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           ++E +R   V  +++    L+N    D       ++YK M ++GV+ ++  YN L  AC 
Sbjct: 148 VFEQMRLHEVKPHLHACTVLLNSLLKDGVTHMVWKIYKRMVQVGVVPNIYIYNCLFHACS 207

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
            +G+   A+++  E   ++ KGVL+ D+FTY+T++ ++        AL ++  M   G+ 
Sbjct: 208 KSGDVERAEQLLNE---MDVKGVLQ-DIFTYNTLLSLYCKKGMHYEALSIQNRMEREGIN 263

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
            + ++++SLI      G + +AM +F E+  A   PN      L+    +  + + A ++
Sbjct: 264 LDIVSYNSLIYGFCKEGRMREAMRMFSEIKNA--TPNHVTYTTLIDGYCKTNELEEALKM 321

Query: 456 FRSW-------------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
            +               ++ +     G   D N   ++ M  +  Q+   T N + N++ 
Sbjct: 322 CKLMEAKGLYPGVVTYNSILRKLCQDGRIRDAN-KLLNEMSERKLQADNITCNTLINAYC 380

Query: 503 SSFDKRFS-----------FKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHI 549
              D + +            KP   TY  L+   C   +    K LM  M   G +P++ 
Sbjct: 381 KIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKTNELESAKELMFSMLDAGFTPSYC 440

Query: 550 SWTILIDACGGSGNVEGAL 568
           +++ ++D      N++  L
Sbjct: 441 TYSWIVDGYNKKDNMDAVL 459



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 103/237 (43%), Gaps = 33/237 (13%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD-LKF-TLEV 311
           PN+YI   +   C   GD  ++  +  ++  + V  +I+ +N+L+++     + +  L +
Sbjct: 194 PNIYIYNCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKKGMHYEALSI 253

Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH------------------- 352
              M++ G+  D+ SYN L+   C  G    A  ++ E+K+                   
Sbjct: 254 QNRMEREGINLDIVSYNSLIYGFCKEGRMREAMRMFSEIKNATPNHVTYTTLIDGYCKTN 313

Query: 353 -----------LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
                      +EAKG L   V TY++I++        + A K+  +M    +  + IT 
Sbjct: 314 ELEEALKMCKLMEAKG-LYPGVVTYNSILRKLCQDGRIRDANKLLNEMSERKLQADNITC 372

Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           ++LINA    G ++ A+    +ML+AG +P+      L+    +  + + A  L  S
Sbjct: 373 NTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKTNELESAKELMFS 429



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 18/206 (8%)

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           S +V  +A +K  Q A++V E M    V P+    + L+N+    G+      +++ M+Q
Sbjct: 130 SWLVIHYAKSKMTQDAIQVFEQMRLHEVKPHLHACTVLLNSLLKDGVTHMVWKIYKRMVQ 189

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT---DRISNME 483
            G  PN    N L  AC ++   +RA +L     +   +  L + +  NT          
Sbjct: 190 VGVVPNIYIYNCLFHACSKSGDVERAEQLLNEMDV---KGVLQDIFTYNTLLSLYCKKGM 246

Query: 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVG 543
           H +  SI N              +R        +YN L+   C +    +A+        
Sbjct: 247 HYEALSIQNRM------------EREGINLDIVSYNSLIYGFCKEGRMREAMRMFSEIKN 294

Query: 544 LSPNHISWTILIDACGGSGNVEGALQ 569
            +PNH+++T LID    +  +E AL+
Sbjct: 295 ATPNHVTYTTLIDGYCKTNELEEALK 320



 Score = 45.4 bits (106), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 20/241 (8%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
           + + +  F K+  +  A+R +   K   ++PN     T+ID       Y K+  + E L+
Sbjct: 269 YNSLIYGFCKEGRMREAMRMFSEIKN--ATPNHVTYTTLID------GYCKTNELEEALK 320

Query: 284 ------SQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACC 335
                 ++ +   +  +NS++     D  ++   ++   M +  + AD  + N L+ A C
Sbjct: 321 MCKLMEAKGLYPGVVTYNSILRKLCQDGRIRDANKLLNEMSERKLQADNITCNTLINAYC 380

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
             G+  L   +  + K LEA   LK D FTY  ++  F      + A ++   ML AG T
Sbjct: 381 KIGD--LKSALKFKNKMLEAG--LKPDPFTYKALIHGFCKTNELESAKELMFSMLDAGFT 436

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           P+  T+S +++       ++  + L +E L  G   +      L+++  +  +   A RL
Sbjct: 437 PSYCTYSWIVDGYNKKDNMDAVLALPDEFLSRGICLDVSVYRALIRSSCKVERIQCAERL 496

Query: 456 F 456
           F
Sbjct: 497 F 497


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 145/338 (42%), Gaps = 28/338 (8%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSL 297
           AL+  D        P+M+   TII   G+C + M  RA  +  +L  +    ++  +N L
Sbjct: 243 ALKLLDEMLSRGLKPDMFTYNTIIR--GMCKEGMVDRAFEMIRNLELKGCEPDVISYNIL 300

Query: 298 MNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
           +    +  K+  E  K M K+       ++ +Y+IL+   C  G     +E    +K ++
Sbjct: 301 LRALLNQGKWE-EGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKI---EEAMNLLKLMK 356

Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
            KG L  D ++Y  ++  F       +A++  E M+S G  P+ + +++++      G  
Sbjct: 357 EKG-LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKA 415

Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG 474
           +QA+ +F ++ + GC PNS   N +  A   +    RA  +          V+ G D D 
Sbjct: 416 DQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEM------VSNGIDPD- 468

Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF-SFKPTTTTYNILMKACCTDYYRVK 533
                  + +    S       V  +     D R   F P+  TYNI++   C  +    
Sbjct: 469 ------EITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIED 522

Query: 534 AL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           A+  ++ M   G  PN  ++T+LI+  G +G    A++
Sbjct: 523 AIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAME 560



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 134/306 (43%), Gaps = 25/306 (8%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
           G+Y++S  + E +  +    ++ +   L+       ++   + V + ++K G   D+ +Y
Sbjct: 99  GNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG-QPDVFAY 157

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N L+   C       A  +   ++  +       D  TY+ ++          +ALKV +
Sbjct: 158 NALINGFCKMNRIDDATRVLDRMRSKD----FSPDTVTYNIMIGSLCSRGKLDLALKVLD 213

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
            +LS    P  IT++ LI A    G V++A+ L +EML  G +P+    N +++   +  
Sbjct: 214 QLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEG 273

Query: 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507
             DRAF + R+  L   +           D IS   +   +++ N   +       +  K
Sbjct: 274 MVDRAFEMIRNLELKGCE----------PDVIS--YNILLRALLNQGKWEEGEKLMT--K 319

Query: 508 RFSFK--PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGN 563
            FS K  P   TY+IL+   C D    +A  L+  M+  GL+P+  S+  LI A    G 
Sbjct: 320 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 379

Query: 564 VEGALQ 569
           ++ A++
Sbjct: 380 LDVAIE 385



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 8/122 (6%)

Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
           L   LE+  N    G+  D  +YN ++   C  G    A E+  +++  E        V 
Sbjct: 454 LHMILEMVSN----GIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCE----FHPSVV 505

Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
           TY+ ++  F  A   + A+ V + M+  G  PN  T++ LI     AG   +AM L  ++
Sbjct: 506 TYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 565

Query: 425 LQ 426
           ++
Sbjct: 566 VR 567


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 22/297 (7%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMA 322
           G+C  G +     + +D+ S+ +  N+  FN L++V   +  L+   E+YK M   G+  
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 331

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           ++ +YN L+   C+      A  +      L  +     D+ T+++++K +   K     
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNML----DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 387

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
           +KV  ++   G+  N +T+S L+     +G ++ A  LF+EM+  G  P+     ILL  
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDG 447

Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
             +  + ++A  +F    L K+++ LG      T  I  M    K  + +  N      +
Sbjct: 448 LCDNGKLEKALEIFED--LQKSKMDLG--IVMYTTIIEGMCKGGK--VEDAWNL-----F 496

Query: 503 SSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
            S   +   KP   TY +++   C      +A  L+ +M   G +PN  ++  LI A
Sbjct: 497 CSLPCK-GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 32/290 (11%)

Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
           ++  +NS++N    + D    L++ + M++  V AD+ +Y+ ++ + C  G    A  ++
Sbjct: 192 DVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLF 251

Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
              K +E KG+ K  V TY+++V+    A  W     + +DM+S  + PN IT++ L++ 
Sbjct: 252 ---KEMETKGI-KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307

Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK---- 463
               G +++A  L++EM+  G  PN    N L+       +   A  +      +K    
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 464 --TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
             T  +L + Y     R+      D   +           + +  KR        TY+IL
Sbjct: 368 IVTFTSLIKGY-CMVKRVD-----DGMKV-----------FRNISKR-GLVANAVTYSIL 409

Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           ++  C        + L  EM + G+ P+ +++ IL+D    +G +E AL+
Sbjct: 410 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE 459



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 141/343 (41%), Gaps = 92/343 (26%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----------NA 302
           PN+     ++DV    G   ++  +Y+++ ++ ++ NI  +N+LM+            N 
Sbjct: 296 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 355

Query: 303 HDL-----------KFT---------------LEVYKNMQKLGVMADMASYNILLKACCL 336
            DL            FT               ++V++N+ K G++A+  +Y+IL++  C 
Sbjct: 356 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 415

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           +G   LA+E++ E   + + GVL  DV TY  ++    D    + AL++ ED+  + +  
Sbjct: 416 SGKIKLAEELFQE---MVSHGVLP-DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDL 471

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
             + ++++I      G VE A +LF  +   G +PN     +++              L 
Sbjct: 472 GIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISG------------LC 519

Query: 457 RSWTLSKTQVALGE-DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
           +  +LS+  + L + + DGN                                     P  
Sbjct: 520 KKGSLSEANILLRKMEEDGNA------------------------------------PND 543

Query: 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILID 556
            TYN L++A     D      L+ EM++ G S +  S  ++ID
Sbjct: 544 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 90/232 (38%), Gaps = 26/232 (11%)

Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
           K LE  G+   +++T + ++  F        A  V   ++  G  P+T T+++LI     
Sbjct: 112 KQLELNGIAH-NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFL 170

Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS----------WT 460
            G V +A+ L + M++ GC+P+    N ++     +     A  L R           +T
Sbjct: 171 EGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFT 230

Query: 461 LSKTQVALGED--YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF---DKRFSFK--- 512
            S    +L  D   D        ME K  +S   T N +      +    D     K   
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290

Query: 513 -----PTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
                P   T+N+L+     +        L  EM T G+SPN I++  L+D 
Sbjct: 291 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG 342



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 86/195 (44%), Gaps = 9/195 (4%)

Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
           I V G C  G    +  +++++ S  V  ++  +  L++   +   L+  LE+++++QK 
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 467

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
            +   +  Y  +++  C  G    A  ++     L  KGV K +V TY+ ++        
Sbjct: 468 KMDLGIVMYTTIIEGMCKGGKVEDAWNLFC---SLPCKGV-KPNVMTYTVMISGLCKKGS 523

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A  +   M   G  PN  T+++LI A    G +  +  L EEM   G   ++    +
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 583

Query: 439 LLQACVEACQFDRAF 453
           ++   +   + D++F
Sbjct: 584 VIDMLLSG-ELDKSF 597


>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
          Length = 853

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 33/330 (10%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           T+I + G    +   + + +++   +    +  +N +++    A+ LK  ++V++ MQ+ 
Sbjct: 365 TMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEA 424

Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
           G   D  +Y  L+     AG   +A ++YG ++ +     L  D FTYS +V        
Sbjct: 425 GYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVG----LSPDTFTYSVMVNCLGKGGQ 480

Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
              A K+  +M+  G TPN +T++ +I   A A   E  + L+++M  AG  P+    +I
Sbjct: 481 LAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSI 540

Query: 439 LLQACVEACQFDRAFRLF----RSWTLSKTQVALGEDY---DGNTDRISNMEHKDKQSIT 491
           +++        D A  +F    R W   +    L  D     GN D+         Q   
Sbjct: 541 VMEVLGHCGHLDEAEAVFIEMRRDWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGL 600

Query: 492 NTPNFVP--NSHYSSFDKRFSFK---------------PTTTTYNILMKACCTDYYRVKA 534
             PN VP  NS  S+F K   F+               P+  TY +L+ +CCT       
Sbjct: 601 Q-PN-VPTCNSLLSAFLKMNRFQDAYIVLQNMLARGLVPSVQTYTLLL-SCCTVGQAQMG 657

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
           L  ++  +   P H+    L DA  G  NV
Sbjct: 658 LCCQLMAITGHPAHMFLLYLPDAEAGGQNV 687



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 122/283 (43%), Gaps = 43/283 (15%)

Query: 305 LKFTLEVYKNMQ--KLGVMADMASYNILLKACCLAGNTVLA-----QEIYGEVKHLEAKG 357
           L+   + Y  +Q  K G M +    N+  K      N VL          G  + L+ + 
Sbjct: 295 LRSVEQYYHTLQQMKWGPMTEHVLDNLHCKIDAFQANQVLKLLHDHTVALGFFQWLKRQP 354

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
             K D  TY+T++ +   A+ + +  ++ ++M  A   P  +T++ +I+A   A  +++A
Sbjct: 355 GFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEA 414

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YD- 473
           + +FEEM +AG EP+      L+    +A   D A  L+        +V L  D   Y  
Sbjct: 415 VKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYG----RMQEVGLSPDTFTYSV 470

Query: 474 -----GNTDRISNMEHKDKQSITN--TPNFVPNSHYSSFDKRFSFKPTTTTYNIL--MKA 524
                G   +++       + I N  TPN V                   TYNI+  ++A
Sbjct: 471 MVNCLGKGGQLAAAYKLFCEMIENGCTPNLV-------------------TYNIMIALQA 511

Query: 525 CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              +Y  V  L  +M+  G  P+ I+++I+++  G  G+++ A
Sbjct: 512 KARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEA 554



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/301 (20%), Positives = 128/301 (42%), Gaps = 25/301 (8%)

Query: 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214
           F+ LK +     D       +G++    +F +  + LDE  R    C  KP V       
Sbjct: 347 FQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRA--HC--KPTV------- 395

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274
                  + +   +  +G+   L  A++ ++  ++    P+     T+ID+    G    
Sbjct: 396 -------VTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDI 448

Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           +  +Y  ++   ++ + + ++ ++N       L    +++  M + G   ++ +YNI++ 
Sbjct: 449 AMDLYGRMQEVGLSPDTFTYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIA 508

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
               A N     ++Y   K ++  G  + D  TYS +++V         A  V  +M   
Sbjct: 509 LQAKARNYENVVKLY---KDMQVAG-FRPDKITYSIVMEVLGHCGHLDEAEAVFIEM-RR 563

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
              P+   +  L++    AG V++A+  ++ MLQ G +PN   CN LL A ++  +F  A
Sbjct: 564 DWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDA 623

Query: 453 F 453
           +
Sbjct: 624 Y 624



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 99/225 (44%), Gaps = 7/225 (3%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +C  +    K   L  A+  Y   ++   SP+ +    +++  G  G    +  ++ +
Sbjct: 431 VTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNCLGKGGQLAAAYKLFCE 490

Query: 282 LRSQNVTLNIYVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +     T N+  +N +  +   A + +  +++YK+MQ  G   D  +Y+I+++     G+
Sbjct: 491 MIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGH 550

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+ ++ E++   A      D   Y  +V ++  A     AL   + ML  G+ PN  
Sbjct: 551 LDEAEAVFIEMRRDWAP-----DEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPNVP 605

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
           T +SL++A       + A  + + ML  G  P+ Q   +LL  C 
Sbjct: 606 TCNSLLSAFLKMNRFQDAYIVLQNMLARGLVPSVQTYTLLLSCCT 650


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 101/227 (44%), Gaps = 33/227 (14%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +P+ Y    +I     CG   K+  I+ ++R   V  ++  + +++        +   +E
Sbjct: 404 APDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 463

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV-------------------- 350
            +  M   GV  D  +YN L++  C  G+ + A+E+  E+                    
Sbjct: 464 KFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLC 523

Query: 351 ---KHLEAKGVLKL--------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              + ++A+ +  L        D   YS ++  +      + AL+V + M+SAG+ PN +
Sbjct: 524 KLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV 583

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
            + +L+N     G +++ + LF EMLQ G +P++   +I++    +A
Sbjct: 584 VYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQA 630



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 149/356 (41%), Gaps = 32/356 (8%)

Query: 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--V 300
           A  A    + SP  +    ++D C        + A +  L    + +NI + N L+    
Sbjct: 111 ASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFC 170

Query: 301 NAHDLKFTLEVY-KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
            A      L++      +LG + D+ SY+ILLK+ C  G +  A ++   +   E   V 
Sbjct: 171 EAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA--EGGAVC 228

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             +V  Y+T++  F        A  + ++M+  G+ P+ +T++S+++A   A  +++A  
Sbjct: 229 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 288

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW----------TLSKTQVAL- 468
              +M+     PN+   N L+       Q+  A R+F+            TLS    +L 
Sbjct: 289 FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 348

Query: 469 --GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS---------FDKRF--SFKPTT 515
             G+  +   D    M  K +     + N + N + +          FD        P  
Sbjct: 349 KYGKIKEAR-DVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDF 407

Query: 516 TTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            T+N+L+KA   C    +   + NEMR  G+ P+ +++  +I A    G ++ A++
Sbjct: 408 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 463



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 134/310 (43%), Gaps = 36/310 (11%)

Query: 216 IVPRADILFCNFVREFGKKRDLVS----------------ALRAYDASKKHLSSPNMYIC 259
           ++ +A I+F N +R+ G K D+V+                A+  ++       +P+ Y  
Sbjct: 422 MLDKAMIIF-NEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 480

Query: 260 RTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE---VYKN 314
             +I   G C  G  +K++ +  ++ +  + L+I  F+S++N N   L   ++   ++  
Sbjct: 481 NCLIQ--GFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIIN-NLCKLGRVMDAQNIFDL 537

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
              +G+  D   Y++L+   CL G    A  ++  +        ++ +V  Y T+V  + 
Sbjct: 538 TVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAM----VSAGIEPNVVVYCTLVNGYC 593

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                   L +  +ML  G+ P+TI +S +I+    AG    A   F EM ++G   +  
Sbjct: 594 KIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDIC 653

Query: 435 CCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG--NTDRISNMEHKDKQS 489
             NI+L+   +   FD A  LF   R+  +    + L    DG   T R+   E KD  +
Sbjct: 654 TYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVE--EAKDLFA 711

Query: 490 ITNTPNFVPN 499
             +    VPN
Sbjct: 712 SISRSRLVPN 721



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 106/217 (48%), Gaps = 10/217 (4%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           ALR +DA       PN+ +  T+++  G C  G   +  +++ ++  + +  +  +++ +
Sbjct: 566 ALRVFDAMVSAGIEPNVVVYCTLVN--GYCKIGRIDEGLSLFREMLQRGIKPSTILYSII 623

Query: 298 MN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++    A         +  M + G+  D+ +YNI+L+   L  N    + I+   K L A
Sbjct: 624 IDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG--LFKNRCFDEAIF-LFKELRA 680

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
             V K+++ T +T++      +  + A  +   +  + + PN +T+S +I      GLVE
Sbjct: 681 MNV-KINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVE 739

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           +A  +F  M  AGCEPNS+  N +++  ++  +  RA
Sbjct: 740 EAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRA 776



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 136/322 (42%), Gaps = 31/322 (9%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+ A    + ++ V  N + +N+L+    +    K  + V+K M++  ++ D+ + ++L+
Sbjct: 285 KAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 344

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            + C  G    A++++     +  KG    DVF+Y+ ++  +A          + + ML 
Sbjct: 345 GSLCKYGKIKEARDVFDT---MAMKGQ-NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLG 400

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+ P+  T++ LI A AN G++++AM +F EM   G +P+      ++ A     + D 
Sbjct: 401 DGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDD 460

Query: 452 AFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQS-ITNTPNFVPNSHYSS--- 504
           A   F       ++  + A      G     S ++ K+  S I N    +    +SS   
Sbjct: 461 AMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIIN 520

Query: 505 --------------FD--KRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
                         FD        P    Y++LM   C      KAL   + M + G+ P
Sbjct: 521 NLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEP 580

Query: 547 NHISWTILIDACGGSGNVEGAL 568
           N + +  L++     G ++  L
Sbjct: 581 NVVVYCTLVNGYCKIGRIDEGL 602


>gi|410110071|gb|AFV61115.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           macrostachya]
          Length = 437

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 124/252 (49%), Gaps = 6/252 (2%)

Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
           VP   +L+ N +    K  D   A+  +   K+   +P++     +I+V G    + ++R
Sbjct: 43  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 102

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKAC 334
           ++  ++R+  V  N   +++L+ +   + KF   L V+  M+++  + D+ + NI++   
Sbjct: 103 SLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 162

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
              G    A +++  ++ +     ++ +V +Y+T+++V+ DA+ +  A+ +   M    +
Sbjct: 163 GQLGMAKEADKLFWGMRKMG----IEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNI 218

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
             N +T++S++         E+A +L +EM   G EPNS   + ++    +  + DRA  
Sbjct: 219 VQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAM 278

Query: 455 LFRSWTLSKTQV 466
           LF+    S  ++
Sbjct: 279 LFQKLRSSGVEI 290



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 14/208 (6%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           D+  Y+ ++ VF  AK ++ A  +  +M +AGV PNT ++S+L+          +A+ +F
Sbjct: 81  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVF 140

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM +  C  +   CNI++    +      A +LF  W + K  +      + N    + 
Sbjct: 141 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF--WGMRKMGI------EPNVVSYNT 192

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEM 539
           +     +   +   F    H     +R +      TYN +M       ++ +   L+ EM
Sbjct: 193 L----LRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 248

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
           +  G+ PN I+++ +I   G  G ++ A
Sbjct: 249 QNRGIEPNSITYSTIISIWGKVGKLDRA 276



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 115/250 (46%), Gaps = 11/250 (4%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +R A ++P     +   +  + + +  + AL  +   ++     ++  C  +IDV G  G
Sbjct: 108 MRTAGVMPNT-ASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLG 166

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN 328
              ++  ++  +R   +  N+  +N+L+ V  +A      + ++  MQ+  ++ ++ +YN
Sbjct: 167 MAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYN 226

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
            ++    + G T+  ++    ++ ++ +G+ + +  TYSTI+ ++        A  + + 
Sbjct: 227 SMM---MIYGKTLEHEKANNLIQEMQNRGI-EPNSITYSTIISIWGKVGKLDRAAMLFQK 282

Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
           + S+GV  + + + ++I A   AGLV  A  L  E+      P     +IL      A +
Sbjct: 283 LRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHIL----AGAGR 338

Query: 449 FDRAFRLFRS 458
            + A  +FR 
Sbjct: 339 IEEATYVFRQ 348


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 126/299 (42%), Gaps = 27/299 (9%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           A+ E +  +     +  +NS++     A  +       + M   G   D+ +Y  L+   
Sbjct: 130 ALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGF 189

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
           C + +     E+ GEV     +G    D+ TYST++     A   + A+ + E+M  A  
Sbjct: 190 CKSRDVGRGLELLGEVTR---RG-FTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCA-- 243

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
            P  IT++SLI     AG +++A+ L  +M+   C P+      L+ A  +  + D A+ 
Sbjct: 244 -PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYE 302

Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNM--EHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
           LF+    +K    L  D    T  +  +  E + + ++                 R    
Sbjct: 303 LFQQMVANK----LSPDVVTFTSLVDGLCGEGRMEDALELLEEIT----------RRGCP 348

Query: 513 PTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           PT  TYN ++   C      + + L+ + R+ G  PN +++ IL+  C  +G  + ALQ
Sbjct: 349 PTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQ 407



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 116/273 (42%), Gaps = 25/273 (9%)

Query: 190 ELDEEFRIVQLCVNK---PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246
           ++DE  R++   V+    PDV              + +   +  F K   L  A   +  
Sbjct: 261 DMDEAIRLLGKMVDDKCAPDV--------------VTYTTLMSAFCKMGRLDDAYELFQQ 306

Query: 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN--VNA 302
              +  SP++    +++D  G+CG+     A+   E++  +     IY +N +++    A
Sbjct: 307 MVANKLSPDVVTFTSLVD--GLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKA 364

Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
           + ++   E+  + +  G + +  +YNIL+  CC AG T  A +   ++      G     
Sbjct: 365 NQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLN--SEGGPCPTS 422

Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
           V  Y+ I+           A++  E+M+  G  P   T+++++ A   A   +QA  L E
Sbjct: 423 VAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLE 482

Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
           EM++ G  P    C+ ++ A   A    +A  L
Sbjct: 483 EMIKYGHTPGPGTCDAVVSAYCRAGMIQKADEL 515



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 133/320 (41%), Gaps = 66/320 (20%)

Query: 262 IIDVCGICGDYMKSRAIYEDLR------SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYK 313
           II    + G + KSR +   L        +  T +I  ++++++    A  L+  +++++
Sbjct: 179 IITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFE 238

Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
            M          +YN L+   C AG+   A  + G  K ++ K     DV TY+T++  F
Sbjct: 239 EMS---CAPTAITYNSLIGGYCRAGDMDEAIRLLG--KMVDDK--CAPDVVTYTTLMSAF 291

Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
                   A ++ + M++  ++P+ +T++SL++     G +E A+ L EE+ + GC P  
Sbjct: 292 CKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTI 351

Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
              N ++    +A Q  +A  L   +                                 +
Sbjct: 352 YTYNCVVDGYCKANQVRKAEELVADF--------------------------------RS 379

Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTV-GLSPNHIS 550
             FVPN               T TYNIL+  CC      +AL  ++++ +  G  P  ++
Sbjct: 380 RGFVPN---------------TVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVA 424

Query: 551 -WTILIDACGGSGNVEGALQ 569
            + I++DA    G  + A+Q
Sbjct: 425 MYAIILDALCRDGRTDDAVQ 444



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 114/294 (38%), Gaps = 32/294 (10%)

Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
            A  L+  ++V + M     + D  +  +++++ CL      A+E+  E+ H   +G + 
Sbjct: 51  KARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLH---RG-MA 106

Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
            +  TYS +V      +    A+ + E M   G  P  +T++S+I     A  V++A   
Sbjct: 107 ANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGF 166

Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVALGEDYDGNT- 476
            E+M+  GC P+      L+    ++    R   L    T    +   V      DG   
Sbjct: 167 MEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCK 226

Query: 477 -----DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK-----------PTTTTYNI 520
                D +   E         T N +   +  + D   + +           P   TY  
Sbjct: 227 AGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTT 286

Query: 521 LMKACCT-----DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           LM A C      D Y    L  +M    LSP+ +++T L+D   G G +E AL+
Sbjct: 287 LMSAFCKMGRLDDAYE---LFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALE 337



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 108/272 (39%), Gaps = 42/272 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
           I +   +  F K RD+   L       +   +P++    T+ID  G+C  G    +  I+
Sbjct: 180 ITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVID--GLCKAGRLRDAVDIF 237

Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
           E++      +    +NSL+     A D+   + +   M       D+ +Y  L+ A C  
Sbjct: 238 EEMSCAPTAIT---YNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKM 294

Query: 338 GNTVLAQEIY-----------------------GEVKHLEAKGVLK--------LDVFTY 366
           G    A E++                       GE +  +A  +L+          ++TY
Sbjct: 295 GRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTY 354

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           + +V  +  A   + A ++  D  S G  PNT+T++ L+  C  AG  +QA+   +++  
Sbjct: 355 NCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNS 414

Query: 427 AG--CEPNSQCCNILLQACVEACQFDRAFRLF 456
            G  C  +     I+L A     + D A + +
Sbjct: 415 EGGPCPTSVAMYAIILDALCRDGRTDDAVQFY 446


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 16/183 (8%)

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLK----FTLEVYKNMQKLGVMADMASYNILL 331
           R +    R   V+ NI         N + LK      L V K M + G+   M +YN +L
Sbjct: 195 RTLKSRFRPDTVSYNILA-------NGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTML 247

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
           K    +     A E Y E+K    K   ++DV +Y+T++  F +A   + A +V ++M+ 
Sbjct: 248 KGYFRSNQIKEAWEFYLEMK----KRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVK 303

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPNSQCCNILLQACVEACQFD 450
            GV PN  T+++LI        V+ A+ +FEEM++ G C PN    N++++        +
Sbjct: 304 EGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDME 363

Query: 451 RAF 453
           RA 
Sbjct: 364 RAL 366



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 12/169 (7%)

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           M    +++DL S N  L+I   ++ +   AHDL  TL       K     D  SYNIL  
Sbjct: 162 MHEHGLHQDLHSFNTLLDILCKSNRVE-TAHDLLRTL-------KSRFRPDTVSYNILAN 213

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             CL   T +A  +   +K +  +G+ +  + TY+T++K +  +   + A +   +M   
Sbjct: 214 GYCLKKRTPMALRV---LKEMVQRGI-EPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKR 269

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
               + ++++++I+    AG V++A  +F+EM++ G  PN    N L+Q
Sbjct: 270 KCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQ 318



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 110/264 (41%), Gaps = 20/264 (7%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +  + +M + G+  D+ S+N LL   C +     A ++   +K        + D  +Y+ 
Sbjct: 156 VRTFLSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLK-----SRFRPDTVSYNI 210

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           +   +   K   MAL+V ++M+  G+ P  +T+++++     +  +++A   + EM +  
Sbjct: 211 LANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRK 270

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG-EDYDGNTDRISNMEHKDK 487
           CE +      ++    EA +  +A R+F    + K  VA     Y+             K
Sbjct: 271 CEIDVVSYTTVIHGFGEAGEVKKAKRVFDE--MVKEGVAPNVATYNALIQVFCK-----K 323

Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLS 545
            S+ N       + +    +     P   T+N++++  C   D  R    M  M   GL 
Sbjct: 324 DSVQNAV-----AVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLR 378

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
            +  ++ ++I     +G +E  L+
Sbjct: 379 ASVQTYNVVIRYFCDAGEIEKGLE 402



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 96/203 (47%), Gaps = 10/203 (4%)

Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
           T+I   G  G+  K++ +++++  + V  N+  +N+L+ V      ++  + V++ M + 
Sbjct: 280 TVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVRE 339

Query: 319 GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
           GV + ++ ++N++++  C  G+    +   G ++ +   G L+  V TY+ +++ F DA 
Sbjct: 340 GVCSPNVVTFNVVIRGLCHVGDM---ERALGFMERMGEHG-LRASVQTYNVVIRYFCDAG 395

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ---AMHLFEEMLQAGCEPNSQ 434
             +  L+V   M      PN  T++ LI+A       E    A  L  EM++ G  P   
Sbjct: 396 EIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKF 455

Query: 435 CCNILLQACVEACQFDRAFRLFR 457
             N +L   V     D A  + R
Sbjct: 456 TFNRVLNGLVITGNQDFAKDILR 478



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 93/205 (45%), Gaps = 5/205 (2%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
           ALR      +    P M    T++          ++   Y +++ +   +++  + ++++
Sbjct: 224 ALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIH 283

Query: 300 V--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
               A ++K    V+  M K GV  ++A+YN L++  C   +   A  ++ E   +  +G
Sbjct: 284 GFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEE---MVREG 340

Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
           V   +V T++ +++        + AL   E M   G+  +  T++ +I    +AG +E+ 
Sbjct: 341 VCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKG 400

Query: 418 MHLFEEMLQAGCEPNSQCCNILLQA 442
           + +F +M    C PN    N+L+ A
Sbjct: 401 LEVFGKMGDGLCLPNLDTYNVLISA 425


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 138/328 (42%), Gaps = 41/328 (12%)

Query: 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNI 329
           Y ++  + +++R +  T +I  +N ++N    + +    +E  KN+   G   +  SYNI
Sbjct: 83  YKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNI 142

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           +LK  C A     A+E+ GE+     KG    +V T++ ++         + AL+V E +
Sbjct: 143 VLKGLCTAERWEDAEELMGEMGQ---KGCPP-NVVTFNMLISFLCRKGLVEPALEVLEQI 198

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
              G TPN+++++ L++A      +++AM   + M+  GC P+    N LL A   + + 
Sbjct: 199 PKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEV 258

Query: 450 DRAFRLFRSWT--------LSKTQVALGEDYDGNT----DRISNMEHKDKQSITNTPNFV 497
           D A  L             +S   V  G    G T    + ++ M  K  Q     P+ +
Sbjct: 259 DVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ-----PDII 313

Query: 498 PNSHYS--------------SFDK--RFSFKPTTTTYNILMKACCT--DYYRVKALMNEM 539
             S  +              +F K      +P T  YN ++   C   + +    L   M
Sbjct: 314 TYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYM 373

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGA 567
              G  PN  ++TILI+     G ++ A
Sbjct: 374 IGNGCMPNESTYTILIEGLAYEGLIKEA 401



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 14/217 (6%)

Query: 245 DASKKHLSS----PNMYICRTIIDVCGICGD--YMKSRAIYEDLRSQNVTLNIYVFNSLM 298
           DA+++ ++     P+ Y   T+I   G+CG      + A+ +++  +    ++  +  L+
Sbjct: 17  DAARRLVAEMPVEPDAYTYNTLIR--GLCGRGRTANALAVLDEMLRRRCVPDVVTYTILL 74

Query: 299 NVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
                    K  +++   M+  G   D+ +YN+++   C  G    A E    +K+L + 
Sbjct: 75  EATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEF---LKNLPSY 131

Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
           G  + +  +Y+ ++K    A+ W+ A ++  +M   G  PN +T++ LI+     GLVE 
Sbjct: 132 GC-EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEP 190

Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
           A+ + E++ + GC PNS   N LL A  +  + D+A 
Sbjct: 191 ALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAM 227



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 122/287 (42%), Gaps = 47/287 (16%)

Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
           ++ V  D  +YN L++  C  G T  A  +  E+  L  + V   DV TY+ +++     
Sbjct: 25  EMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEM--LRRRCVP--DVVTYTILLEATCKR 80

Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
             ++ A+K+ ++M   G TP+ +T++ ++N     G V+ A+   + +   GCEPN+   
Sbjct: 81  SGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSY 140

Query: 437 NILLQACVEACQFDRA------------------FRLFRSWTLSKTQVALGEDYDGNTDR 478
           NI+L+    A +++ A                  F +  S+   K  V            
Sbjct: 141 NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLV---------EPA 191

Query: 479 ISNMEHKDKQSIT-NTPNFVPNSH----YSSFDKRFSF---------KPTTTTYNILMKA 524
           +  +E   K   T N+ ++ P  H        DK  +F          P   +YN L+ A
Sbjct: 192 LEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 251

Query: 525 CC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            C   +      L+++++  G +P  IS+  +ID    +G  + AL+
Sbjct: 252 LCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 298



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 98/246 (39%), Gaps = 56/246 (22%)

Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
           +YN ++   C AG    A+ +  E+        ++ D +TY+T+++          AL V
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEMP-------VEPDAYTYNTLIRGLCGRGRTANALAV 54

Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
            ++ML     P+ +T++ L+ A       +QAM L +EM   GC P+    N+++    +
Sbjct: 55  LDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ 114

Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505
             + D A    +                                  N P+          
Sbjct: 115 EGRVDDAIEFLK----------------------------------NLPS---------- 130

Query: 506 DKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
              +  +P T +YNI++K  CT   +   + LM EM   G  PN +++ +LI      G 
Sbjct: 131 ---YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGL 187

Query: 564 VEGALQ 569
           VE AL+
Sbjct: 188 VEPALE 193



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 11/172 (6%)

Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
           D M SR  Y D+ S N  L     +  ++V        +E+   ++  G    + SYN +
Sbjct: 231 DLMVSRGCYPDIVSYNTLLTALCRSGEVDV-------AVELLHQLKDKGCAPVLISYNTV 283

Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
           +     AG T  A E+  E   + +KG L+ D+ TYSTI          + A++    + 
Sbjct: 284 IDGLTKAGKTKEALELLNE---MVSKG-LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQ 339

Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
             G+ PNT+ ++++I           A+ LF  M+  GC PN     IL++ 
Sbjct: 340 DMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEG 391



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 68/326 (20%), Positives = 134/326 (41%), Gaps = 30/326 (9%)

Query: 110 MLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNEC--QRLLD 167
           +++  +V +GI +   EGR+D  +  LK L   G  P  +   S   +LK  C  +R  D
Sbjct: 102 IVTYNVVVNGICQ---EGRVDDAIEFLKNLPSYGCEPNTV---SYNIVLKGLCTAERWED 155

Query: 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAI-------RYACIVPRA 220
           + E      LM  + +   P   +     I  LC  K  V  A+       +Y C  P +
Sbjct: 156 AEE------LMGEMGQKGCPPNVVTFNMLISFLC-RKGLVEPALEVLEQIPKYGC-TPNS 207

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
            + +   +  F K++ +  A+   D        P++    T++      G+   +  +  
Sbjct: 208 -LSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLH 266

Query: 281 DLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
            L+ +     +  +N++++    A   K  LE+   M   G+  D+ +Y+ +    C   
Sbjct: 267 QLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRED 326

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A   +G+V+ +     ++ +   Y+ I+      +    A+ +   M+  G  PN 
Sbjct: 327 RIEDAIRAFGKVQDMG----IRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNE 382

Query: 399 ITWSSLINACANAGLVEQAMHLFEEM 424
            T++ LI   A  GL+++A  L +E+
Sbjct: 383 STYTILIEGLAYEGLIKEARDLLDEL 408


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 101/227 (44%), Gaps = 33/227 (14%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           +P+ Y    +I     CG   K+  I+ ++R   V  ++  + +++        +   +E
Sbjct: 391 APDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 450

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV-------------------- 350
            +  M   GV  D  +YN L++  C  G+ + A+E+  E+                    
Sbjct: 451 KFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLC 510

Query: 351 ---KHLEAKGVLKL--------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              + ++A+ +  L        D   YS ++  +      + AL+V + M+SAG+ PN +
Sbjct: 511 KLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV 570

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
            + +L+N     G +++ + LF EMLQ G +P++   +I++    +A
Sbjct: 571 VYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQA 617



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 149/356 (41%), Gaps = 32/356 (8%)

Query: 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--V 300
           A  A    + SP  +    ++D C        + A +  L    + +NI + N L+    
Sbjct: 98  ASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFC 157

Query: 301 NAHDLKFTLEVY-KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
            A      L++      +LG + D+ SY+ILLK+ C  G +  A ++   +   E   V 
Sbjct: 158 EAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA--EGGAVC 215

Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
             +V  Y+T++  F        A  + ++M+  G+ P+ +T++S+++A   A  +++A  
Sbjct: 216 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 275

Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW----------TLSKTQVAL- 468
              +M+     PN+   N L+       Q+  A R+F+            TLS    +L 
Sbjct: 276 FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 335

Query: 469 --GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS---------FDKRF--SFKPTT 515
             G+  +   D    M  K +     + N + N + +          FD        P  
Sbjct: 336 KYGKIKEAR-DVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDF 394

Query: 516 TTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            T+N+L+KA   C    +   + NEMR  G+ P+ +++  +I A    G ++ A++
Sbjct: 395 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 450



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 134/310 (43%), Gaps = 36/310 (11%)

Query: 216 IVPRADILFCNFVREFGKKRDLVS----------------ALRAYDASKKHLSSPNMYIC 259
           ++ +A I+F N +R+ G K D+V+                A+  ++       +P+ Y  
Sbjct: 409 MLDKAMIIF-NEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 467

Query: 260 RTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE---VYKN 314
             +I   G C  G  +K++ +  ++ +  + L+I  F+S++N N   L   ++   ++  
Sbjct: 468 NCLIQ--GFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIIN-NLCKLGRVMDAQNIFDL 524

Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
              +G+  D   Y++L+   CL G    A  ++  +        ++ +V  Y T+V  + 
Sbjct: 525 TVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAM----VSAGIEPNVVVYCTLVNGYC 580

Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
                   L +  +ML  G+ P+TI +S +I+    AG    A   F EM ++G   +  
Sbjct: 581 KIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDIC 640

Query: 435 CCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG--NTDRISNMEHKDKQS 489
             NI+L+   +   FD A  LF   R+  +    + L    DG   T R+   E KD  +
Sbjct: 641 TYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVE--EAKDLFA 698

Query: 490 ITNTPNFVPN 499
             +    VP+
Sbjct: 699 SISRSRLVPS 708



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 136/322 (42%), Gaps = 31/322 (9%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
           K+ A    + ++ V  N + +N+L+    +    K  + V+K M++  ++ D+ + ++L+
Sbjct: 272 KAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 331

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
            + C  G    A++++     +  KG    DVF+Y+ ++  +A          + + ML 
Sbjct: 332 GSLCKYGKIKEARDVFDT---MAMKGQ-NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLG 387

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
            G+ P+  T++ LI A AN G++++AM +F EM   G +P+      ++ A     + D 
Sbjct: 388 DGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDD 447

Query: 452 AFRLFRSWT---LSKTQVALGEDYDGNTDRISNMEHKDKQS-ITNTPNFVPNSHYSS--- 504
           A   F       ++  + A      G     S ++ K+  S I N    +    +SS   
Sbjct: 448 AMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIIN 507

Query: 505 --------------FD--KRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
                         FD        P    Y++LM   C      KAL   + M + G+ P
Sbjct: 508 NLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEP 567

Query: 547 NHISWTILIDACGGSGNVEGAL 568
           N + +  L++     G ++  L
Sbjct: 568 NVVVYCTLVNGYCKIGRIDEGL 589



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 106/217 (48%), Gaps = 10/217 (4%)

Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
           ALR +DA       PN+ +  T+++  G C  G   +  +++ ++  + +  +  +++ +
Sbjct: 553 ALRVFDAMVSAGIEPNVVVYCTLVN--GYCKIGRIDEGLSLFREMLQRGIKPSTILYSII 610

Query: 298 MN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
           ++    A         +  M + G+  D+ +YNI+L+   L  N    + I+   K L A
Sbjct: 611 IDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRG--LFKNRCFDEAIF-LFKELRA 667

Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
             V K+++ T +T++      +  + A  +   +  + + P+ +T+S +I      GLVE
Sbjct: 668 MNV-KINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVE 726

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           +A  +F  M  AGCEPNS+  N +++  ++  +  RA
Sbjct: 727 EAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRA 763


>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Vitis vinifera]
          Length = 635

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 100/203 (49%), Gaps = 18/203 (8%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDL----RSQNVTL--NIYVFNSLMN--VNAHDL 305
           PN   C      C I G Y K   I E L    R +++ L  N+ VFNSL+   ++A D 
Sbjct: 281 PNERTC------CIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDR 334

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
               EV   M++ GV  D+ +++ ++ A   AG     +EI+ ++     K  ++ D   
Sbjct: 335 DGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDM----VKARIQPDAHV 390

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           YS + K +  A   + A ++   M+ +G  PN + ++++IN   +AG +E A+ +FE+M 
Sbjct: 391 YSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMC 450

Query: 426 QAGCEPNSQCCNILLQACVEACQ 448
           + G  PN +    L+    EA Q
Sbjct: 451 ECGIAPNLKTFETLIWGYGEARQ 473



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 92/465 (19%), Positives = 192/465 (41%), Gaps = 52/465 (11%)

Query: 6   GSSSSSSSAIVATQTRLYNHRNKPNKHPVTKLFPLASSSSLSSIPTVHSSQTALLSTVRR 65
           G++      + A QT +     K   HPV++     S+   S +  +    + L  T  R
Sbjct: 20  GTTDVKKEEVEALQTEVKRRDGKHELHPVSQ-----SADPQSQVRCI----SCLSKTSCR 70

Query: 66  DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR 125
            + SR      M  K    GR +E   I++S++  EG         +  + A  I K   
Sbjct: 71  TVRSRTKLMNIMIEK----GRPQEVQSILDSII--EGGHKPSLVTYTTLLAALTIQK--- 121

Query: 126 EGRIDCVVGVLKKLNELGVAPLELF---------DGSGFKLLKNECQRLLDSGEVEMFVG 176
               D +  ++ ++ E G+ P  +F         +    +       ++ +SG       
Sbjct: 122 --HFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTST 179

Query: 177 LMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236
              +++ + +   E +E  ++++L     +V   +R   ++ RA   +CN       K++
Sbjct: 180 FNTLIKGYGI-AGEPEESQKLLELMSQDENVRPNLRTYNVLVRA---WCN-------KKN 228

Query: 237 LVSALRAYDASKKHLSS---PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
           +   ++A++   K ++S   P+     TI       G+  ++  I  ++++ NV  N   
Sbjct: 229 I---MKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERT 285

Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
              ++        +K  L+    M+ LG+  ++  +N L+K    A    + ++   EV 
Sbjct: 286 CCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDA----VDRDGVNEVL 341

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            L  +  +K DV T+STI+  ++ A +     ++ +DM+ A + P+   +S L      A
Sbjct: 342 TLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRA 401

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           G  E+A  +   M+++G  PN      ++     A + + A ++F
Sbjct: 402 GEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIF 446



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 113/275 (41%), Gaps = 42/275 (15%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I F   +  F +  ++  A++ +   K+  S P      T+I   GI G+  +S+ + E 
Sbjct: 143 IFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLEL 202

Query: 282 L-RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           + + +NV  N+  +N L+    N  ++     V   M   G+  D  +YN +  A    G
Sbjct: 203 MSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNG 262

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A+ I  E+++      ++ +  T   I+  +      + AL+    M   G+ PN 
Sbjct: 263 EASQAEGIILEMQNSN----VQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNL 318

Query: 399 ITWSSLI-----------------------------------NACANAGLVEQAMHLFEE 423
           + ++SLI                                   NA + AG +++   +F++
Sbjct: 319 VVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDD 378

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
           M++A  +P++   +IL +  V A + ++A  +  +
Sbjct: 379 MVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNA 413


>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
          Length = 327

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 129/289 (44%), Gaps = 29/289 (10%)

Query: 287 VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
           VT  I +  +++     D+   +++   M + G+  DM  +N ++   C  G   L    
Sbjct: 26  VTYTILIEATILKGGVDDV---MKLLDEMIESGLRPDMFIFNAVVGGMCREG---LVDRA 79

Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
           +  ++++ AKG    DV +YS +++   + + W+   K+  DMLS G  PN +T+S LI+
Sbjct: 80  FEFIRYISAKGYAP-DVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILIS 138

Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
           +    G VE+A+ L + M + G  P++   + L+ A  +  + D A     S        
Sbjct: 139 SLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMI------ 192

Query: 467 ALGEDYDGNTDRISNMEHKDKQSITNT--PNFVPNSHYSSFDK--RFSFKPTTTTYNILM 522
                 DG    I N       +I +T   N   +     F+K       P  ++YN L 
Sbjct: 193 -----SDGCLPDIVNY-----NTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLF 242

Query: 523 KACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            A  +  ++++AL  + EM +  + P+ I++  LI        V+ A++
Sbjct: 243 SALWSSGHKIRALGMILEMLSKDIDPDEITYNSLISCLCRDAMVDQAIE 291



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 134/324 (41%), Gaps = 61/324 (18%)

Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLR---SQNVTLNIYVFNSLMN--VNAHDLKFT 308
           P+M+I   +  V G+C + +  RA +E +R   ++    ++  ++ L+   +N    +  
Sbjct: 58  PDMFIFNAV--VGGMCREGLVDRA-FEFIRYISAKGYAPDVISYSILLRGLLNQRKWEDG 114

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            ++  +M   G   ++ +Y+IL+ + C  G     +E    +K ++ +G L  D ++Y  
Sbjct: 115 EKLMSDMLSKGCEPNVVTYSILISSLCRDGK---VEEAVSLLKVMKEQG-LTPDAYSYDP 170

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F       +A++  E M+S G  P+ + ++++++     G  ++A+ +FE++ + G
Sbjct: 171 LIAAFCKESRVDLAIEFLESMISDGCLPDIVNYNTILSTLCKNGKADEALKIFEKLGEVG 230

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
           C PN    N L  A                W+      ALG         I  M  KD  
Sbjct: 231 CPPNVSSYNTLFSAL---------------WSSGHKIRALG--------MILEMLSKD-- 265

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSP 546
                                   P   TYN L+   C D    +A  L+ +M +    P
Sbjct: 266 ----------------------IDPDEITYNSLISCLCRDAMVDQAIELLVDMESSVYQP 303

Query: 547 NHISWTILIDACGGSGNVEGALQC 570
           + IS+ I++        +  A++C
Sbjct: 304 SVISYNIVLLGLSKVHRISDAIEC 327


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 137/325 (42%), Gaps = 28/325 (8%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLE 310
           +PN     T+ID         +S  +  ++ S+ V +++ ++ +LM+    + K     +
Sbjct: 324 APNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKD 383

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           V ++ Q   +  +  +Y +L+ A C AGN   A+++   +  +E K V+  +V T+S+I+
Sbjct: 384 VLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQV---LLQMEEKSVIP-NVVTFSSII 439

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                      A      M  +G+ PN +T+ +LI+        E A+ ++ +ML  G E
Sbjct: 440 NGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVE 499

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
            N+   + L+    +    + A  LF+             D D   +R   ++H +  ++
Sbjct: 500 ANNFVVDSLVNGLRKNGNIEGAEALFK-------------DMD---ERGLLLDHVNYTTL 543

Query: 491 TN----TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGL 544
            +    T N              +  P    YN+ +   CT   +   K+ + EMR  GL
Sbjct: 544 MDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGL 603

Query: 545 SPNHISWTILIDACGGSGNVEGALQ 569
            P+  ++  +I A    G    AL+
Sbjct: 604 EPDQATYNTMIAARCREGKTSKALK 628



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 153/344 (44%), Gaps = 44/344 (12%)

Query: 248 KKHLSSPNMYICRTIIDVC--GICGDYMKSRAIYEDL-RSQNV-TLNIYVFNSLMN--VN 301
           K+ +S   + +   ++ +C  G+ G+   + A+ E L R + +  L++  +N+L++    
Sbjct: 143 KRGVSWDGVTVSTALVGLCRTGLVGE---AAALAEMLVRGRGIDGLDVVGWNALIDGYCK 199

Query: 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
             D+   L V + M   GV  D+  YN L+     +G+   A E+   V+ ++A GV + 
Sbjct: 200 VQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEV---VERMKADGV-EP 255

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           +V TY+ ++  +   K    A  + E M+ +GV P+ +T S+L++     G   +A  LF
Sbjct: 256 NVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALF 315

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
            EM + G  PN      L+ +  +A +   +  L     +S+  V     Y    DR+  
Sbjct: 316 REMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEM-VSRGVVMDLVMYTALMDRLGK 374

Query: 482 ----MEHKD----KQSITNTPNFVP-----NSHYSSFD-----------KRFSFKPTTTT 517
                E KD     QS   TPNFV      ++H  + +           +  S  P   T
Sbjct: 375 EGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVT 434

Query: 518 Y----NILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
           +    N L+K  C    +    M +M+  G++PN +++  LID 
Sbjct: 435 FSSIINGLVKRGCLG--KAADYMRKMKDSGIAPNVVTYGTLIDG 476



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 149/362 (41%), Gaps = 33/362 (9%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  F K +   +AL  Y          N ++  ++++     G+   + A+++D
Sbjct: 468 VTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKD 527

Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +  + + L+   + +LM+      ++    +V + + +  +  D   YN+ +   C  G 
Sbjct: 528 MDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGK 587

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
              A+    E+++      L+ D  TY+T++           ALK+ ++M    + PN I
Sbjct: 588 FSEAKSFLKEMRNTG----LEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLI 643

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC---------VEACQFD 450
           T+++L+     AG+V++A  L  EM  AG  P S     +LQAC         +E  +  
Sbjct: 644 TYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELM 703

Query: 451 RAFRLFRSWTLSKTQVAL----GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--YSS 504
               L    T+  T V +    G   +  T  +  M  +     T T N +   H   S 
Sbjct: 704 MGAGLHADITVYNTLVHVLCCHGMARNA-TVVLDEMLTRGIAPDTITFNALILGHCKSSH 762

Query: 505 FDKRFS---------FKPTTTTYNILMKA--CCTDYYRVKALMNEMRTVGLSPNHISWTI 553
            D  F+           P   T+N L+              ++++M+ VGL PN++++ I
Sbjct: 763 LDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDI 822

Query: 554 LI 555
           L+
Sbjct: 823 LV 824



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 121/318 (38%), Gaps = 67/318 (21%)

Query: 254 PNMYICRTIID------VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305
           PN+    +II+        G   DYM+       ++   +  N+  + +L++        
Sbjct: 430 PNVVTFSSIINGLVKRGCLGKAADYMRK------MKDSGIAPNVVTYGTLIDGFFKFQGQ 483

Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
           +  L+VY++M   GV A+    + L+      GN   A+ ++   K ++ +G+L LD   
Sbjct: 484 EAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALF---KDMDERGLL-LDHVN 539

Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
           Y+T++           A KV ++++   ++P+ + ++  IN     G   +A    +EM 
Sbjct: 540 YTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMR 599

Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
             G EP+    N ++ A     +  +A +L +                            
Sbjct: 600 NTGLEPDQATYNTMIAARCREGKTSKALKLLKEM-------------------------- 633

Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVG 543
                                KR S KP   TY  L+          + K L+NEM + G
Sbjct: 634 ---------------------KRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAG 672

Query: 544 LSPNHISWTILIDACGGS 561
            +P  ++   ++ AC GS
Sbjct: 673 FAPTSLTHQRVLQACSGS 690



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 18/241 (7%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           LE+++ M   G+ AD+  YN L+   C  G   +A+     +  +  +G+   D  T++ 
Sbjct: 697 LEIHELMMGAGLHADITVYNTLVHVLCCHG---MARNATVVLDEMLTRGIAP-DTITFNA 752

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++     +     A  +   ML  G++PN  T+++L+    +AG + +A  +  +M + G
Sbjct: 753 LILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVG 812

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
            EPN+   +IL+    +      A RL+    +SK  +     Y+      S M    K 
Sbjct: 813 LEPNNLTYDILVTGYAKKSNKVEALRLY-CEMVSKGFIPKASTYN------SLMSDFAKA 865

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
            + N    +    +S   +R     T++TY+IL+       +   V+ L+ +M+ +G  P
Sbjct: 866 GMMNQAKEL----FSEMKRRGVLH-TSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKP 920

Query: 547 N 547
           +
Sbjct: 921 S 921



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVY 312
           ++ +  T++ V    G    +  + +++ ++ +  +   FN+L+  +  +  L     +Y
Sbjct: 711 DITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIY 770

Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
             M   G+  ++A++N LL     AG    A  +  ++K +     L+ +  TY  +V  
Sbjct: 771 AQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVG----LEPNNLTYDILVTG 826

Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           +A       AL++  +M+S G  P   T++SL++  A AG++ QA  LF EM + G    
Sbjct: 827 YAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHT 886

Query: 433 SQCCNILLQA 442
           S   +ILL  
Sbjct: 887 SSTYDILLNG 896



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 6/184 (3%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           AIY  +  Q ++ NI  FN+L+    +A  +     V  +M+K+G+  +  +Y+IL+   
Sbjct: 768 AIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGY 827

Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
               N V A  +Y E   + +KG +     TY++++  FA A     A ++  +M   GV
Sbjct: 828 AKKSNKVEALRLYCE---MVSKGFIP-KASTYNSLMSDFAKAGMMNQAKELFSEMKRRGV 883

Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
              + T+  L+N  +      +   L ++M + G +P+    + + +A         A R
Sbjct: 884 LHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSKGTISSMSRAFSRPGMTGEARR 943

Query: 455 LFRS 458
           L ++
Sbjct: 944 LLKT 947


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 150/371 (40%), Gaps = 62/371 (16%)

Query: 210 AIRYACIVPRADIL-FCNFVREFGKKRDLVSALRAYDA-SKKHLS-SPNMYICRTIIDVC 266
           A+   C   R D++ +   V    K   +  ALR  D  S++ L   P++    T++D  
Sbjct: 160 ALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVD-- 217

Query: 267 GIC--GDYMKSRAIYEDLRS--QNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGV 320
           G+C  G   ++ A  E   S       N   +N L++      ++    E+ + M+  GV
Sbjct: 218 GLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGV 277

Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
             ++ + N ++   C AG T  A E + E + +  +G  K +  TYST+V          
Sbjct: 278 PQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEG--KGNAVTYSTLVGALLHTNNVG 335

Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
           MA+++  + +S G +P+ I + ++I+    AG +E A  +   M +AG + +++  NIL+
Sbjct: 336 MAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILI 395

Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
                   F R  RL  ++ L +                                     
Sbjct: 396 AG------FCRKKRLHEAYELLQEM----------------------------------- 414

Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
                 K    +P   TYN L+   C   D+  V  L+ +M   G  P+ I++  L+   
Sbjct: 415 ------KEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGY 468

Query: 559 GGSGNVEGALQ 569
              G ++ AL+
Sbjct: 469 CKVGKIDEALR 479



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 6/206 (2%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
           SP+  +  T+I      G    + ++   ++     L+   +N L+        L    E
Sbjct: 350 SPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYE 409

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
           + + M+++G+  D+ +YN LL   C AG+     E+ G++         +  V T+ T+V
Sbjct: 410 LLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKM----IDDGCQPSVITFGTLV 465

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
             +        AL++   M  +G+ PN + +++LI+     G V+ A+ LF+EM +    
Sbjct: 466 HGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVP 525

Query: 431 PNSQCCNILLQACVEACQFDRAFRLF 456
            N    N LL+   +    ++AF L 
Sbjct: 526 ANVTTFNALLKGLRDKNMPEKAFELM 551


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 150/343 (43%), Gaps = 37/343 (10%)

Query: 253  SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
            SP  Y+   +ID+ G    +  +  + + ++++NV + +  F  L+   V A      + 
Sbjct: 1177 SPEPYM--EMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVH 1234

Query: 311  VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
             +  M+  G   D  ++++++ +       + AQ  +  +K        + DV  Y+++V
Sbjct: 1235 AFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDR-----FEPDVVVYTSLV 1289

Query: 371  KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
              +  A     A +V  +M  AG+ PN  T+S +I+A   +G + +A  +F EM+  GC+
Sbjct: 1290 HGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCD 1349

Query: 431  PNSQCCNILLQACVEACQFDRAFRLFRSWT-LSKTQVALGEDY-------DGNTDRISNM 482
            PN+   N L++  V+A + ++  +++     L     A+  ++       D N +    +
Sbjct: 1350 PNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKI 1409

Query: 483  EHKDKQSIT-NTPNFVP-----------NSHYSSFDKRFSFK--PTTTTYNILMKACC-- 526
             +  K+    N  +F P           NS +  F K    K  P T TYNILM+     
Sbjct: 1410 LNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADK 1469

Query: 527  --TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
              TD   V  L  EM    + PN  ++ +LI    G G+   A
Sbjct: 1470 KSTDM--VLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNA 1510



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 7/238 (2%)

Query: 222  ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
            +++ + V  + +  ++  A R +   K     PN+Y    +ID     G   ++  ++ +
Sbjct: 1283 VVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSE 1342

Query: 282  LRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
            +       N   FN+LM  +V A   +  L+VY  M++LG   D  +YN L+++ C   N
Sbjct: 1343 MIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDN 1402

Query: 340  TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
               A +I   VK    KG   L+  +++ I    +       A ++   M      PNT+
Sbjct: 1403 LEEAVKILNSVK----KGC-NLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTV 1457

Query: 400  TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
            T++ L+   A+    +  + L +EM +   EPN+    +L+        ++ A+  F+
Sbjct: 1458 TYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFK 1515


>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
 gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
          Length = 634

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 146/353 (41%), Gaps = 23/353 (6%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           I +C  +   GK R   S +       K   + +M   +  I      G+   +  ++E 
Sbjct: 229 ITYCKMLHILGKTRQFESMVAMIQEMGK-AGALSMDAFKVAIKSFAAAGEIKNAVGVFEL 287

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDL--KFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           +R       +  FN L+   A +   +   +V+  M       D+ SY  L+ A C A N
Sbjct: 288 MRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHGQ-YSPDLRSYTALMLAWCNARN 346

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
            V A  ++ E+  LE KG +  DV  ++T+++     +    A+K+ E M + G  PN  
Sbjct: 347 LVEAGRVWNEM--LE-KG-MDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVW 402

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
           T++ LI      G ++ AM  FEEM +A C+P+      LL     A Q DR   +    
Sbjct: 403 TYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEM 462

Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
           T  K        Y+     ++N    D  +            Y    K+   +PT  TYN
Sbjct: 463 T-QKGCPPDARTYNALIKLLTNRNMPDDAARI----------YKKMIKK-GLEPTIHTYN 510

Query: 520 ILMKACC---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           ++MK+     ++Y    A+  EM   G+ P+  S+T+ I+     G  E A +
Sbjct: 511 MMMKSYFVGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINRHIRHGRPEEAYK 563



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 11/201 (5%)

Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTII-DVCGICGDYMKSRAIYEDLRSQNVTLN 290
           G++R    A++ ++  K     PN++    +I D C   G    +   +E+++      +
Sbjct: 379 GQRRP--EAVKMFELMKAKGPPPNVWTYTMLIRDHCKQ-GKMDMAMECFEEMQEAKCQPD 435

Query: 291 IYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
           +  +  L+    NA  +     V + M + G   D  +YN L+K   L  N  +  +   
Sbjct: 436 VATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIK---LLTNRNMPDDAAR 492

Query: 349 EVKHLEAKGVLKLDVFTYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
             K +  KG L+  + TY+ ++K  F     + M   V E+M   G+ P+  +++  IN 
Sbjct: 493 IYKKMIKKG-LEPTIHTYNMMMKSYFVGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINR 551

Query: 408 CANAGLVEQAMHLFEEMLQAG 428
               G  E+A    EEM+  G
Sbjct: 552 HIRHGRPEEAYKYIEEMINKG 572


>gi|199601721|dbj|BAG70980.1| pentatricopeptide (PPR) repeat-containing protein [Musa balbisiana]
          Length = 788

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 121/265 (45%), Gaps = 55/265 (20%)

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
           +++++ + +LGV   + SY+ + KA   +G   +A+ ++     + A+GVL + + TY+T
Sbjct: 233 VKIFRRLPELGVTRTVRSYDAVFKAILRSGRVAMARRLFNA---MIAEGVLPV-LSTYNT 288

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F  +   + A +   DM   G+ P+ +T+++++N  A A  ++ A  +F EM  AG
Sbjct: 289 LLWGFCLSIKMETAQRFFADMKERGIAPDLVTYNTILNGWARAKKMDDAEKVFAEMTAAG 348

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
             PNS   NI+++  V + + D   R+F                       S M  K   
Sbjct: 349 FAPNSISYNIMIKGYVCSGRVDDGLRMF-----------------------SEMGEK--- 382

Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLS 545
                              RFS K    T+  LM   C D  R    +  +NEM  + L+
Sbjct: 383 -----------------GLRFSEK----TFAALMPGLCDDVGRAAEARKALNEMAKLQLT 421

Query: 546 PNHIS-WTILIDACGGSGNVEGALQ 569
           P+  S +  L+ +   SG++EGAL+
Sbjct: 422 PSDKSIFLRLVTSLCESGDLEGALE 446



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 37/213 (17%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
           +VP ++ +F + +  +G  R    A++ +    + L  P + + RT+     +       
Sbjct: 208 LVPPSEDMFASLIEGYGCARIPQEAVKIF----RRL--PELGVTRTVRSYDAVF------ 255

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           +AI   LRS  V +   +FN+++                    GV+  +++YN LL   C
Sbjct: 256 KAI---LRSGRVAMARRLFNAMIAE------------------GVLPVLSTYNTLLWGFC 294

Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
           L+     AQ  + ++K    +G+   D+ TY+TI+  +A AK    A KV  +M +AG  
Sbjct: 295 LSIKMETAQRFFADMKE---RGIAP-DLVTYNTILNGWARAKKMDDAEKVFAEMTAAGFA 350

Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           PN+I+++ +I     +G V+  + +F EM + G
Sbjct: 351 PNSISYNIMIKGYVCSGRVDDGLRMFSEMGEKG 383



 Score = 42.0 bits (97), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 13/168 (7%)

Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASY 327
           GD  K+ A +  L  + V   +  FNSL+  +A +   +   E+   M + GV  D  SY
Sbjct: 517 GDTKKAEAFFRQLMKKGVDDKV-AFNSLIRGHAKEGMPEAASEILTIMTRHGVPTDADSY 575

Query: 328 NILLKACCLAGNTVLAQEIYG---EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
            +L+++         A+       E  HL +  + +      S +V +F D +  Q A +
Sbjct: 576 VLLVESFLKKSEPADARTALDSMMEQGHLPSASLFR------SVMVALFDDGRV-QTASR 628

Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
           V + M+  GV  N      +++A    G VE+A+     M+   C P+
Sbjct: 629 VMKSMIEKGVKENMDMVHKILDALFMRGHVEEALGRINLMIMNDCTPD 676


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 112/233 (48%), Gaps = 7/233 (3%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +R F + R    A+  ++  K+    P+++    ++D     G   K+  ++ ++ +  
Sbjct: 160 LIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMG 219

Query: 287 VTLNIYVFNSLMN---VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
                   ++ M    + A  +K   EV+  M+K G   D  +YN ++     AG+   A
Sbjct: 220 FVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGH---A 276

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
           QE    + ++ AK  +  +V TY  +V     A   + A ++   M ++G  PN++ ++S
Sbjct: 277 QEALKVLDNMLAKACVPTEV-TYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTS 335

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           LI+  A +G +++A  LF+EM++AG  P+     +++    ++  F++A + F
Sbjct: 336 LIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSF 388



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 25/267 (9%)

Query: 309 LEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
            EV+  M  +G V  D A +  +++    A     A+E++G+++    K     D   Y+
Sbjct: 209 FEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQME----KCGFPPDAIAYN 264

Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
           T++   A A   Q ALKV ++ML+    P  +T+  L+N+   AG +E+A  LF  M  +
Sbjct: 265 TMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAAS 324

Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
           G  PNS     L+        F ++ R+  + +L    V  G       D I++    D 
Sbjct: 325 GFRPNSVIYTSLIHG------FAKSGRMKEACSLFDEMVEAGY----RPDVITHTVMID- 373

Query: 488 QSITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKACCTDYYRVK---ALMNEMRTV 542
             +  + NF       SF++  R   KP   TY  +++   +   RV     +M  M   
Sbjct: 374 -GLCKSGNF--EQAAKSFEEMMRGGCKPNVVTYTTIIQG-LSKIGRVANAFRIMKGMIAH 429

Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
           G  P+ +++  L+D     G ++ A Q
Sbjct: 430 GCFPDSVTYICLLDGFCKLGRLDEAAQ 456



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 7/171 (4%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G+C  G   ++ ++++++  Q    +   +  ++N  +    L+   + +  M   G   
Sbjct: 622 GLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKP 681

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
            +A+Y  L++A C AGN     E +   + + A+G L   V  Y  ++  F  A     A
Sbjct: 682 TVATYTALVQALCHAGNV---DEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAA 738

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           LK+ EDM+S G  P  +T +SL +    +G  E+A  L +EM   G  P++
Sbjct: 739 LKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHA 789



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 149/384 (38%), Gaps = 34/384 (8%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
            VP    L    VR   K + +  A   +   +K    P+     T+ID     G   ++
Sbjct: 220 FVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEA 279

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
             + +++ ++        +  L+N    A  L+   E+++ M   G   +   Y  L+  
Sbjct: 280 LKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHG 339

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
              +G    A  ++ E+  +EA    + DV T++ ++     +  ++ A K  E+M+  G
Sbjct: 340 FAKSGRMKEACSLFDEM--VEAG--YRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGG 395

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             PN +T++++I   +  G V  A  + + M+  GC P+S     LL    +  + D A 
Sbjct: 396 CKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAA 455

Query: 454 RLFRSWTLSKTQVAL--------GEDYDGNTDRISN--MEHKDKQSITNTPNF-----VP 498
           +L        +   L        G    G+ ++  +   E     + T  P       V 
Sbjct: 456 QLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVG 515

Query: 499 NSHYSSFDKRFSF---------KPTTTTYNILMKACCTD----YYRVKALMNEMRTVGLS 545
                  D+             KP  TTYNIL+   C        R  AL++++  VG  
Sbjct: 516 LCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYL 575

Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
           P+ +++T L       G V+ A++
Sbjct: 576 PDAVTYTPLCIGLCKIGEVDRAVK 599



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 38/238 (15%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           DVFTY+ ++ +    K +     + E+ML AG+ PNT +++ LI + A     + A+  F
Sbjct: 118 DVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCF 177

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG---EDYDGNTDR 478
           E M +  C+P+     IL+    +A   ++AF +F         +A+G    D   +T  
Sbjct: 178 EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHE------MMAMGFVPPDRALHTAM 231

Query: 479 ISNM-------EHKDKQSITNTPNFVP-----NSHYSSFDKRFSFK-------------- 512
           +  +       E ++         F P     N+      K    +              
Sbjct: 232 VRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKAC 291

Query: 513 -PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            PT  TY IL+ + C      R + L   M   G  PN + +T LI     SG ++ A
Sbjct: 292 VPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEA 349



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 11/186 (5%)

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           R + E  +    T NI + N L     + ++    +  +++K+G + D  +Y  L    C
Sbjct: 531 RMVSEGCKPDATTYNILI-NGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLC 589

Query: 336 LAGNTVLAQEIYGEVKHLE---AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             G      E+   VK LE   ++G    DV  Y+ +            A+ + ++M+  
Sbjct: 590 KIG------EVDRAVKMLEEASSRG-WNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQ 642

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G  P+   +  +IN       +E A   F+EM+  G +P       L+QA   A   D A
Sbjct: 643 GGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEA 702

Query: 453 FRLFRS 458
           F  F S
Sbjct: 703 FHRFES 708


>gi|356562139|ref|XP_003549331.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 689

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 113/257 (43%), Gaps = 17/257 (6%)

Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
           R  IL+   ++ F K +DL +  + +D   +    P+     TII    IC    K+   
Sbjct: 164 REVILYNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVSFSTIISCARICSLPNKAVEW 223

Query: 279 YEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
           +E + S     +   ++++++    A ++   L +Y   +      D  +++ L+K   L
Sbjct: 224 FEKMPSFRCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDSVTFSTLIKMYGL 283

Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
           AGN      +Y E+K L  K     ++  Y+T++     AK    A  +  +M + G  P
Sbjct: 284 AGNYDGCLNVYQEMKALGVKS----NMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFLP 339

Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           N  T++SL+ A       E A+ +++EM + G E N+   N LL  C +    D AF++F
Sbjct: 340 NWATYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLADDAFKIF 399

Query: 457 R-----------SWTLS 462
                       SWT S
Sbjct: 400 EDMKSSATCLCDSWTFS 416



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 117/239 (48%), Gaps = 7/239 (2%)

Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
           D+ +   +  +G+  ++  ALR YD ++      +     T+I + G+ G+Y     +Y+
Sbjct: 236 DVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDSVTFSTLIKMYGLAGNYDGCLNVYQ 295

Query: 281 DLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338
           ++++  V  N+ ++N+L++    A        +Y  M   G + + A+Y  LL+A     
Sbjct: 296 EMKALGVKSNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFLPNWATYASLLRAYGRGR 355

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-N 397
            +  A  +Y E+K    KG ++++   Y+T++ + AD      A K+ EDM S+     +
Sbjct: 356 YSEDALFVYKEMKE---KG-MEMNTHLYNTLLAMCADLGLADDAFKIFEDMKSSATCLCD 411

Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           + T+SSLI   + +G V +A  +  EM+++G +P       L+Q   +  + D   + F
Sbjct: 412 SWTFSSLITIYSCSGNVSEAERMLNEMIESGFQPTIFVLTSLVQCYGKVGRTDDVLKTF 470



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 5/226 (2%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + F   ++ +G   +    L  Y   K      NM I  T++D  G      ++++IY +
Sbjct: 272 VTFSTLIKMYGLAGNYDGCLNVYQEMKALGVKSNMVIYNTLLDAMGRAKRPWQAKSIYTE 331

Query: 282 LRSQNVTLNIYVFNSLMNVNAHDL--KFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
           + +     N   + SL+         +  L VYK M++ G+  +   YN LL  C   G 
Sbjct: 332 MTNNGFLPNWATYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLG- 390

Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
             LA + +   + +++      D +T+S+++ +++ +     A ++  +M+ +G  P   
Sbjct: 391 --LADDAFKIFEDMKSSATCLCDSWTFSSLITIYSCSGNVSEAERMLNEMIESGFQPTIF 448

Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
             +SL+      G  +  +  F ++L  G  P+ + C  LL    +
Sbjct: 449 VLTSLVQCYGKVGRTDDVLKTFNQLLDLGISPDDRFCGCLLNVMTQ 494


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 130/327 (39%), Gaps = 59/327 (18%)

Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL-------- 342
           +FNSL++    + D  +  ++ K M   G       YNIL+   C  GN  L        
Sbjct: 371 IFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGIC--GNEKLPSLDVLEL 428

Query: 343 AQEIYGE--------------------------------VKHLEAKGVLKLDVFTYSTIV 370
           A++ YGE                                ++ + +KG +  D  TYS ++
Sbjct: 429 AEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIP-DTSTYSKVI 487

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
            +  +A     A  + E+M S  V P+  T++ LI++    GL++QA   F+EM++ GC 
Sbjct: 488 GLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCA 547

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSW--------TLSKTQVALGEDYDGNTDRISNM 482
           PN      L+ A ++A +   A  LF            ++ T +  G    G  ++   +
Sbjct: 548 PNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607

Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY--RVKALMNEMR 540
             + + +  + P+      Y   D      P   TY  L+   C  +     + L++ M 
Sbjct: 608 YARMRGN-ADIPDV---DMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMS 663

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGA 567
             G  PNHI +  LID     G ++ A
Sbjct: 664 VEGCEPNHIVYDALIDGFCKVGKLDEA 690



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 10/177 (5%)

Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTL 309
           PN  +   +ID  G C  G   +++ ++  +  +    N+Y ++SL++    D  L   L
Sbjct: 669 PNHIVYDALID--GFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLAL 726

Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
           +V   M +     ++  Y  ++   C  G T    E Y  +  +E KG    +V TY+ +
Sbjct: 727 KVLSRMLENSCAPNVIIYTEMIDGLCKVGKT---DEAYRLMSMMEEKGC-HPNVVTYTAM 782

Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +  F  A      L++   M + G  PN +T+  LIN C  AGL++ A  L +EM Q
Sbjct: 783 IDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 147/352 (41%), Gaps = 56/352 (15%)

Query: 265 VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMA 322
           +CG  G + K+ +I  ++ S+    +   ++ ++ +  NA  +     +++ M+   V+ 
Sbjct: 455 LCG-AGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVP 513

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
           D+ +Y IL+ + C  G    A++ + E+     +     +V TY+ ++  +  A+    A
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEM----VRDGCAPNVVTYTALIHAYLKARKMSSA 569

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM--------------LQAG 428
            ++ E MLS G  PN +T+++LI+    +G +E+A  ++  M              +  G
Sbjct: 570 NELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDG 629

Query: 429 C--EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
              +PN      L+    +A +   A  L    ++   +      YD   D    +   D
Sbjct: 630 NIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPN-HIVYDALIDGFCKVGKLD 688

Query: 487 KQSITNTP----NFVPNSH-YSSF------DKRF-------------SFKPTTTTYNILM 522
           +  +  T      + PN + YSS       DKR              S  P    Y  ++
Sbjct: 689 EAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMI 748

Query: 523 KACCT-----DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              C      + YR+ ++M E    G  PN +++T +ID  G +G V+  L+
Sbjct: 749 DGLCKVGKTDEAYRLMSMMEEK---GCHPNVVTYTAMIDGFGKAGKVDKCLE 797



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 22/254 (8%)

Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
           + +   +  + K R + SA   ++        PN+     +ID     G   K+  IY  
Sbjct: 551 VTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYAR 610

Query: 282 LRSQ----NVTL------------NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMAD 323
           +R      +V +            NI+ + +L++    AH +K   ++   M   G   +
Sbjct: 611 MRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPN 670

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
              Y+ L+   C  G    AQ ++ +   +  +G    +V+TYS+++      K   +AL
Sbjct: 671 HIVYDALIDGFCKVGKLDEAQMVFTK---MSERGY-GPNVYTYSSLIDRLFKDKRLDLAL 726

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
           KV   ML     PN I ++ +I+     G  ++A  L   M + GC PN      ++   
Sbjct: 727 KVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGF 786

Query: 444 VEACQFDRAFRLFR 457
            +A + D+   L R
Sbjct: 787 GKAGKVDKCLELMR 800



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 113/298 (37%), Gaps = 42/298 (14%)

Query: 294 FNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
           +N+L+ V   A  L     V++ M   G   D  +    +   C AG        + E  
Sbjct: 235 YNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGR-------WREAL 287

Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
            L  K   KLD   Y+ ++    +A  ++ A+     M S+   PN +T+  L+  C   
Sbjct: 288 ALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRK 347

Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL--- 468
             + +   +   M+  GC P+ +  N L+ A   +  +  A++L +       Q      
Sbjct: 348 RQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVY 407

Query: 469 --------GEDYDGNTDRISNMEHK-----DKQSITNTPNFVPN-----SHYSSFDKRFS 510
                   G +   + D +   E       D   + N  N V N          F+K +S
Sbjct: 408 NILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVN-VSNLARCLCGAGKFEKAYS 466

Query: 511 ---------FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
                    F P T+TY+ ++   C       A  L  EM++  + P+  ++TILID+
Sbjct: 467 IIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDS 524



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 60/161 (37%), Gaps = 36/161 (22%)

Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
           N+L++ CC  G   +A E  G +K L  K        TY+ +V+VF +A     A  V  
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKP----SRLTYNALVRVFLEADRLDTAYLVHR 256

Query: 388 DMLSAGVTP--------------------------------NTITWSSLINACANAGLVE 415
           +M  +G                                   +T+ ++ +I+    A L E
Sbjct: 257 EMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFE 316

Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           +AM     M  + C PN     ILL  C+   Q  R  R+ 
Sbjct: 317 EAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRIL 357


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 117/268 (43%), Gaps = 18/268 (6%)

Query: 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363
           + +  LE+ + M + G   D  ++NIL+   C A       E+   ++ L+  GV   + 
Sbjct: 230 NFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEV---LRRLQRDGVCMPNA 286

Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
            TY++++  +  A   + A+ V  DML +G  PNT+T++ LIN    A  +E A+ ++ +
Sbjct: 287 VTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQ 346

Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483
           ++   C P+    + L+       Q D A R+++   L   Q         N    S + 
Sbjct: 347 LILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQ--------PNVYTFSIII 398

Query: 484 HK-DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMR 540
           H   KQ+ +     +        + R    P T  YN ++   C      +A  ++ +M+
Sbjct: 399 HSLCKQNRSAEALDI----LRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMK 454

Query: 541 TVGLSPNHISWTILIDACGGSGNVEGAL 568
             G  P+  ++TILI      G +  A+
Sbjct: 455 EKGCHPDKYTYTILIIGHCMKGRIPEAI 482



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 120/258 (46%), Gaps = 14/258 (5%)

Query: 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDY 272
           CI P A     N +   G+ +D V+   ++   +  L SP+++    +I   G+C  G++
Sbjct: 176 CIEPYAYNYLLNSLIAHGRAQDAVALFESW--IQDGLYSPDVWSFNVVIK--GVCRMGNF 231

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGV-MADMASYNI 329
            K+  + E +     + +    N L++    A  +    EV + +Q+ GV M +  +Y  
Sbjct: 232 QKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTS 291

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           ++   C AG    A  +Y ++  LE+    + +  TY+ ++  +  A   + A+++   +
Sbjct: 292 VISGYCKAGKMEDAMSVYNDM--LESG--TRPNTVTYNVLINGYGKALDMESAVRMYRQL 347

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
           +     P+ +T+SSLI+     G ++ A  +++EM     +PN    +I++ +  +  + 
Sbjct: 348 ILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRS 407

Query: 450 DRAFRLFRSWTLSKTQVA 467
             A  + R   + +T +A
Sbjct: 408 AEALDILRELNM-RTDIA 424



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/286 (19%), Positives = 120/286 (41%), Gaps = 12/286 (4%)

Query: 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC----VNKPDVNLA--IRYACIVPRADI 222
           G  +  + L+E + EF      +     +  LC    VNK    L    R    +P A +
Sbjct: 229 GNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNA-V 287

Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
            + + +  + K   +  A+  Y+   +  + PN      +I+  G   D   +  +Y  L
Sbjct: 288 TYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQL 347

Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
             ++   ++  F+SL++       L     ++K M    +  ++ +++I++ + C    +
Sbjct: 348 ILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRS 407

Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
             A +I   ++ L  +  +    F Y+ ++ +         A  +  DM   G  P+  T
Sbjct: 408 AEALDI---LRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYT 464

Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           ++ LI      G + +A+ LF +M++AGC P++   N  +   ++A
Sbjct: 465 YTILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVLKA 510


>gi|218188821|gb|EEC71248.1| hypothetical protein OsI_03217 [Oryza sativa Indica Group]
          Length = 571

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 149/355 (41%), Gaps = 28/355 (7%)

Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK-SRAIYEDL 282
           F + +R + +    ++AL  + ++   L  P+     T +    +   ++  +R++  D+
Sbjct: 105 FLSLLRAYSRAHQPLAALHLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADM 164

Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLE----VYKNMQKLGVMADMASYNILLKACCLAG 338
           R+         +N L+  +  D    ++    V++N+ K     D  SYN ++   C  G
Sbjct: 165 RAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPK----PDACSYNTVIDGLCRRG 220

Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
               A++++ E   + A G     V TY+T++   A    +  ALK+ ++M   G+ PN 
Sbjct: 221 RLPEARDLFAE---MIANGTAP-TVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNV 276

Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFRLFR 457
           +T+SSLI+     G    A+ L + M++    PN+   + ++   C E C   +A  +  
Sbjct: 277 VTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGC-LGQAMEILD 335

Query: 458 SWTLS--KTQVAL-GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
              L   K    L G+   G  D    +E  +     N     PN    S   R +    
Sbjct: 336 RMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLHGRIN---- 391

Query: 515 TTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
               + ++ A C+    V+A      MRT G+S    ++ +L++      N+E A
Sbjct: 392 ----DAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKKNNLEKA 442


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 108/209 (51%), Gaps = 10/209 (4%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFT 308
           +PN+    T I   G+C  G +  +  + ++L  +N  LN + FN+++        L   
Sbjct: 242 TPNVVTYGTYIK--GLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEA 299

Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
            EV+K M+  G++ D+ SY+IL+   C  G    A E++ E+++    G+L  ++++YS 
Sbjct: 300 SEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRN---SGILP-NIYSYSI 355

Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
           ++  F        AL+V E+M ++G+ P+  ++S LI+     G ++ A+  +EEM    
Sbjct: 356 LIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNN 415

Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
             P++     L++   ++ QF  A + FR
Sbjct: 416 FSPSAFNYCSLIKGYYKSKQFANALKEFR 444



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 157/355 (44%), Gaps = 40/355 (11%)

Query: 101 EGNVSKFASMLSLEMVASGIVKSI-----------REGRIDCVVGVLKKLNELGVAPLEL 149
           +G +   AS +  EM  SGI+  +           R+GR+D    V K++   G+ P  +
Sbjct: 292 QGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILP-NI 350

Query: 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR----LPVKELDEEFRIVQLCVNKP 205
           +  S   L+   C+     G V+     +EV EE +    LP  ++     ++     K 
Sbjct: 351 YSYS--ILIDGFCK----EGRVD---KALEVFEEMKNSGILP--DVYSYSILIDGFCRKG 399

Query: 206 DVNLAIRY------ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYIC 259
           D++ AI++          P A   +C+ ++ + K +   +AL+ +   +K    P+   C
Sbjct: 400 DMDSAIKFWEEMTSNNFSPSA-FNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIAC 458

Query: 260 RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQK 317
             I+ +     D+ K+ A+ E  +   V  N Y +N  ++        +  L++   M K
Sbjct: 459 NHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLK 518

Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
             V+ D+ +Y+ L+   C A      + +   +K    K  +  +V TY+ ++ +F    
Sbjct: 519 RNVLPDVVNYSTLIS--CFAKRLNSEKAVMLFIKM--TKVGITFNVKTYTILINLFISDC 574

Query: 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
              +A ++ + M  + V P+ I ++SL+    N G + +A  LF+EM + GC PN
Sbjct: 575 KMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPN 629



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 158/360 (43%), Gaps = 42/360 (11%)

Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVT 288
           F K+  +  AL  ++  K     P++Y    +ID  G C  GD   +   +E++ S N +
Sbjct: 360 FCKEGRVDKALEVFEEMKNSGILPDVYSYSILID--GFCRKGDMDSAIKFWEEMTSNNFS 417

Query: 289 LNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAG--NTVLAQ 344
            + + + SL+       +F   L+ ++ MQKLG+  D  + N +L   C     N  LA 
Sbjct: 418 PSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKALAL 477

Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
                 +  +  GV   + ++Y+  +         + AL++   ML   V P+ + +S+L
Sbjct: 478 S-----EKFQENGV-HFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTL 531

Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
           I+  A     E+A+ LF +M + G   N +   IL+   +  C+ D A+RLF+    S+ 
Sbjct: 532 ISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRV 591

Query: 465 ---QVALGEDYDG--NTDRISNMEHK-DKQSITN-TPNFVP---------------NSH- 501
              Q+A      G  NT  ++      D+ S    +PN V                 +H 
Sbjct: 592 YPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHK 651

Query: 502 -YSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVG-LSPNHISWTILIDA 557
            Y    +R  + P    Y +L+ A C   +  R +AL +EM+  G  +PN + +T LI++
Sbjct: 652 LYEKMKERGVY-PDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINS 710



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 7/186 (3%)

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILL 331
           K+  ++  +    +T N+  +  L+N+   D K  +   ++K M++  V  D  +Y  L+
Sbjct: 543 KAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLV 602

Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
              C  G    A+ ++ E+    ++     +V TY+  +  +        A K+ E M  
Sbjct: 603 AGFCNTGEMTRARALFDEM----SREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKE 658

Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPNSQCCNILLQACVEACQFD 450
            GV P+ I ++ LI A  N G + +A  LF+EM Q G C PN      L+ + ++  + D
Sbjct: 659 RGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRD 718

Query: 451 RAFRLF 456
           +A +L+
Sbjct: 719 QAEKLY 724



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 4/134 (2%)

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
           +N ++   C  G    A E++ E+K+    G+L  DV++YS ++  F        A +V 
Sbjct: 283 FNAVIYGLCQGGILDEASEVFKEMKN---SGILP-DVYSYSILIDGFCRKGRVDQASEVF 338

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
           ++M ++G+ PN  ++S LI+     G V++A+ +FEEM  +G  P+    +IL+      
Sbjct: 339 KEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRK 398

Query: 447 CQFDRAFRLFRSWT 460
              D A + +   T
Sbjct: 399 GDMDSAIKFWEEMT 412


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 144/335 (42%), Gaps = 52/335 (15%)

Query: 253 SPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLK-FTL 309
           +PN++    +ID  G C  G +  ++ +  D+  + +  ++  FN+L++ +  + K F  
Sbjct: 328 APNVFTYNCMID--GFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEA 385

Query: 310 E-VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH---LEAKGVLKL---- 361
           E +   M    +  D  +YN +               IYG  KH    +AK +  L    
Sbjct: 386 EKLCDEMLHRCIFPDTVTYNSM---------------IYGFCKHNRFDDAKHMFDLMASP 430

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           DV T++TI+ V+  AK     +++  ++   G+  NT T+++LI+       +  A  LF
Sbjct: 431 DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLF 490

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
           +EM+  G  P++  CNILL    E  + + A  LF    +SK  +    D       I  
Sbjct: 491 QEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDL----DTVAYNIIIHG 546

Query: 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSF-----KPTTTTYNILMKACC--TDYYRVKA 534
           M    K                ++D   S      +P   TYN+++   C  +       
Sbjct: 547 MCKGSKVD-------------EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANV 593

Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
           L ++M+  G  P++ ++  LI  C  +G ++ +++
Sbjct: 594 LFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIE 628



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 88/229 (38%), Gaps = 48/229 (20%)

Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
           ++Y  +  + + LNIY FN L+    + H L F+L  +  + KLG   D+ ++N LL   
Sbjct: 127 SLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGL 186

Query: 335 CLAGNTVLAQEIYG---EVKHLEAKGV--------------------------------- 358
           CL      A  ++G   E   LEA  +                                 
Sbjct: 187 CLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAA 246

Query: 359 ----------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
                     L +DV TY TIV         + AL +   M    + P+ + +S++I+  
Sbjct: 247 ALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRL 306

Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
              G    A +LF EML+ G  PN    N ++       ++  A RL R
Sbjct: 307 CKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLR 355



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 119/294 (40%), Gaps = 55/294 (18%)

Query: 271 DYM-KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNI 329
           DYM +SR  Y  +    V   I VF   + +N  D+  +L  Y+ M+   +  ++ S+NI
Sbjct: 95  DYMVRSRPFYTAVDCNKV---IGVF---VRMNRPDVAISL--YRKMEIRRIPLNIYSFNI 146

Query: 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
           L+K  C       +   +G++  L      + DV T++T++                ED 
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLG----FQPDVVTFNTLLHGLC-----------LEDR 191

Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQ 448
           +S  +        +L       G +E A+ LF++M++ G  P     N L+   C+E   
Sbjct: 192 ISEAL--------ALFGYMVETGFLE-AVALFDQMVEIGLTPVVITFNTLINGLCLEG-- 240

Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNT-DRISNMEHK--DKQSITNTPNFVPNSHYSSF 505
                R+  +  L    V  G   D  T   I N   K  D +S  N  + +  +H    
Sbjct: 241 -----RVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH---- 291

Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
                 KP    Y+ ++   C D +   A  L +EM   G++PN  ++  +ID 
Sbjct: 292 -----IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 340


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 112/233 (48%), Gaps = 7/233 (3%)

Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
            +R F + R    A+  ++  K+    P+++    ++D     G   K+  ++ ++ +  
Sbjct: 160 LIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMG 219

Query: 287 VTLNIYVFNSLMN---VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
                   ++ M    + A  +K   EV+  M+K G   D  +YN ++     AG+   A
Sbjct: 220 FVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGH---A 276

Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
           QE    + ++ AK  +  +V TY  +V     A   + A ++   M ++G  PN++ ++S
Sbjct: 277 QEALKVLDNMLAKACVPTEV-TYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTS 335

Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
           LI+  A +G +++A  LF+EM++AG  P+     +++    ++  F++A + F
Sbjct: 336 LIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSF 388



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 117/270 (43%), Gaps = 29/270 (10%)

Query: 308 TLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366
             EV+  M  +G V  D A +  +++    A     A+E++G+++    K     D   Y
Sbjct: 208 AFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQME----KCGFPPDAIAY 263

Query: 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
           +T++   A A   Q ALKV ++ML+    P  +T+  L+N+   AG +E+A  LF  M  
Sbjct: 264 NTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAA 323

Query: 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
           +G  PNS     L+        F ++ R+  + +L    V  G       D I++    D
Sbjct: 324 SGFRPNSVIYTSLIHG------FAKSGRMKEACSLFDEMVEAGY----RPDVITHTVMID 373

Query: 487 KQSITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKAC-----CTDYYRVKALMNEM 539
              +  + NF       SF++  R   KP   TY  +++         + +R+   M  M
Sbjct: 374 --GLCKSGNF--EQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRI---MKGM 426

Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGALQ 569
              G  P+ +++  L+D     G ++ A Q
Sbjct: 427 IAHGCFPDSVTYICLLDGFCKLGRLDEAAQ 456



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 7/171 (4%)

Query: 267 GIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMA 322
           G+C  G   ++ ++++++  Q    +   +  ++N  +    L+   + +  M   G   
Sbjct: 622 GLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKP 681

Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
            +A+Y  L++A C AGN     E +   + + A+G L   V  Y  ++  F  A     A
Sbjct: 682 TVATYTALVQALCHAGNV---DEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAA 738

Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
           LK+ EDM+S G  P  +T +SL +    +G  E+A  L +EM   G  P++
Sbjct: 739 LKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHA 789



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 152/385 (39%), Gaps = 36/385 (9%)

Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
            VP    L    VR   K + +  A   +   +K    P+     T+ID     G   ++
Sbjct: 220 FVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEA 279

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
             + +++ ++        +  L+N    A  L+   E+++ M   G   +   Y  L+  
Sbjct: 280 LKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHG 339

Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
              +G    A  ++ E+  +EA    + DV T++ ++     +  ++ A K  E+M+  G
Sbjct: 340 FAKSGRMKEACSLFDEM--VEAG--YRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGG 395

Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
             PN +T++++I   +  G V  A  + + M+  GC P+S     LL    +  + D A 
Sbjct: 396 CKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAA 455

Query: 454 RLF-------RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVP-------- 498
           +L         S  L      +    DG +   + ++   +QS     N  P        
Sbjct: 456 QLLDELDKCSSSPNLQLYSSLVKGLCDGGSVE-NTLDDLFEQSKAAAENLDPGLCCSIIV 514

Query: 499 --------NSHYSSFDKRFS--FKPTTTTYNILMKACCTD----YYRVKALMNEMRTVGL 544
                   +     F +  S   KP  TTYNIL+   C        R  AL++++  VG 
Sbjct: 515 GLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGY 574

Query: 545 SPNHISWTILIDACGGSGNVEGALQ 569
            P+ +++T L       G V+ A++
Sbjct: 575 LPDAVTYTPLCIGLCKIGEVDRAVK 599



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 38/238 (15%)

Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
           DVFTY+ ++ +    K +     + E+ML AG+ PNT +++ LI + A     + A+  F
Sbjct: 118 DVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCF 177

Query: 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG---EDYDGNTDR 478
           E M +  C+P+     IL+    +A   ++AF +F         +A+G    D   +T  
Sbjct: 178 EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHE------MMAMGFVPPDRALHTAM 231

Query: 479 ISNM-------EHKDKQSITNTPNFVP-----NSHYSSFDKRFSFK-------------- 512
           +  +       E ++         F P     N+      K    +              
Sbjct: 232 VRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKAC 291

Query: 513 -PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
            PT  TY IL+ + C      R + L   M   G  PN + +T LI     SG ++ A
Sbjct: 292 VPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEA 349



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 11/186 (5%)

Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
           R + E  +    T NI + N L     + ++    +  +++ +G + D  +Y  L    C
Sbjct: 531 RMVSEGCKPDATTYNILI-NGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLC 589

Query: 336 LAGNTVLAQEIYGEVKHLE---AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
             G      E+   VK LE   ++G    DV  Y+ +            A+ + ++M+  
Sbjct: 590 KIG------EVDRAVKMLEEASSRG-WNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQ 642

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
           G  P+   +  +IN       +E A   F+EM+  G +P       L+QA   A   D A
Sbjct: 643 GGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEA 702

Query: 453 FRLFRS 458
           F  F  
Sbjct: 703 FHRFEG 708


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 149/336 (44%), Gaps = 47/336 (13%)

Query: 272 YMKSRAIYED------LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMAD 323
           Y+++R + E       LRS+  T++I   N+L+   V    ++    VY+ + + GV  +
Sbjct: 175 YVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGIN 234

Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
           + + NI++ A C  G     +++   +  ++ KGV   D+ TY+T++  ++     + A 
Sbjct: 235 VYTLNIMVNALCKDGKM---EKVGTFLSQVQEKGVYP-DIVTYNTLISAYSSKGLMEEAF 290

Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC-NILLQA 442
           ++   M   G +P   T++++IN     G  E+A  +F EML++G  P+S    ++L++A
Sbjct: 291 ELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEA 350

Query: 443 CVEA--CQFDRAFRLFRSWTLSKTQVALGE-----DYDGNTDRISNMEHKDKQSITNTPN 495
           C +    + ++ F   RS  +    V            GN D+     +  K++      
Sbjct: 351 CKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA-----G 405

Query: 496 FVP-NSHYSSFDKRFSFKPTTT-------------------TYNILMKACCTDYYRVKA- 534
            +P N  Y+   + +  K   +                   TYN ++   C      +A 
Sbjct: 406 LIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEAD 465

Query: 535 -LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
            L NEM    L P+  + TILID     GN++ A++
Sbjct: 466 KLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAME 501



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 112/236 (47%), Gaps = 11/236 (4%)

Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
           +R   +VP   + F + +  F +  +L  AL  +++ K+    P+  I   +I   G C 
Sbjct: 366 MRSRDVVPDL-VCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQ--GYCR 422

Query: 271 DYMKSRA--IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMAS 326
             M S A  +  ++  Q   +++  +N++++       L    +++  M +  +  D  +
Sbjct: 423 KGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYT 482

Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
             IL+   C  GN   A E++ ++K       ++LDV TY+T++  F        A ++ 
Sbjct: 483 LTILIDGHCKLGNLQNAMELFQKMKEKR----IRLDVVTYNTLLDGFGKVGDIDTAKEIW 538

Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
            DM+S  + P  I++S L+NA  + G + +A  +++EM+    +P    CN +++ 
Sbjct: 539 ADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKG 594



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 139/309 (44%), Gaps = 24/309 (7%)

Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
           SP+    R+++      GD +++  ++ D+RS++V  ++  F+S+M++   + +L   L 
Sbjct: 337 SPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALM 396

Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
            + ++++ G++ D   Y IL++  C  G   +A  +  E+     +G   +DV TY+TI+
Sbjct: 397 YFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQ---QGC-AMDVVTYNTIL 452

Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
                 K    A K+  +M    + P++ T + LI+     G ++ AM LF++M +    
Sbjct: 453 HGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIR 512

Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
            +    N LL    +    D A  ++    +SK  +     Y    + + +  H  +   
Sbjct: 513 LDVVTYNTLLDGFGKVGDIDTAKEIWADM-VSKEILPTPISYSILVNALCSKGHLAEA-- 569

Query: 491 TNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
                      +  +D+  S   KPT    N ++K  C   +    ++ + +M + G  P
Sbjct: 570 -----------FRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVP 618

Query: 547 NHISWTILI 555
           + IS+  LI
Sbjct: 619 DCISYNTLI 627



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 21/227 (9%)

Query: 219 RADILFCNFVRE-FGKKRDLVSA--LRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
           R D++  N + + FGK  D+ +A  + A   SK+ L +P  Y     I V  +C  G   
Sbjct: 512 RLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYS----ILVNALCSKGHLA 567

Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLM-----NVNAHDLKFTLEVYKNMQKLGVMADMASYN 328
           ++  +++++ S+N+   + + NS++     + NA D +  LE    M   G + D  SYN
Sbjct: 568 EAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLE---KMISEGFVPDCISYN 624

Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
            L+       N   A   +G VK +E  +G L  DVFTY++I+  F      + A  V  
Sbjct: 625 TLIYGFVREENMSKA---FGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLR 681

Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
            M+  GV P+  T++ +IN   +   + +A  + +EMLQ G  P+ +
Sbjct: 682 KMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDK 728



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 83/185 (44%), Gaps = 11/185 (5%)

Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
           M  RA++ D    + TL I +     +    +L+  +E+++ M++  +  D+ +YN LL 
Sbjct: 471 MTERALFPD----SYTLTILIDG---HCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLD 523

Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
                G+   A+EI+ +   + +K +L   + +YS +V           A +V ++M+S 
Sbjct: 524 GFGKVGDIDTAKEIWAD---MVSKEILPTPI-SYSILVNALCSKGHLAEAFRVWDEMISK 579

Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
            + P  +  +S+I     +G         E+M+  G  P+    N L+   V      +A
Sbjct: 580 NIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKA 639

Query: 453 FRLFR 457
           F L +
Sbjct: 640 FGLVK 644


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.133    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,155,555,976
Number of Sequences: 23463169
Number of extensions: 319460788
Number of successful extensions: 928493
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7039
Number of HSP's successfully gapped in prelim test: 3570
Number of HSP's that attempted gapping in prelim test: 809228
Number of HSP's gapped (non-prelim): 75886
length of query: 572
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 424
effective length of database: 8,886,646,355
effective search space: 3767938054520
effective search space used: 3767938054520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)