BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008265
(572 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GYL7|PP361_ARATH Pentatricopeptide repeat-containing protein At5g02830,
chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2
SV=3
Length = 852
Score = 610 bits (1573), Expect = e-174, Method: Compositional matrix adjust.
Identities = 311/580 (53%), Positives = 405/580 (69%), Gaps = 18/580 (3%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNS-SFTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVR 580
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/354 (20%), Positives = 136/354 (38%), Gaps = 67/354 (18%)
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
+C ++ F + AL+ D K +PN + ++I C G ++ ++E++
Sbjct: 377 YCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEML 436
Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
+ N FN L++ V A ++++ + V + + +I+ K + N +
Sbjct: 437 ASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPN-I 495
Query: 342 LAQEIYGEV-------KHLEA--KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
L G + +++A + K TY+ ++K A + ++ ++M S
Sbjct: 496 LKNNGPGSLVNRNSNSPYIQASKRFCFKPTTATYNILLK--ACGTDYYRGKELMDEMKSL 553
Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
G++PN ITWS+LI+ C +G VE A+ + M AG P+ ++ C E A
Sbjct: 554 GLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLA 613
Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
F LF +R+ K
Sbjct: 614 FSLFEEM-----------------------------------------------RRYQIK 626
Query: 513 PTTTTYNILMKA-----CCTDYYRVKALMNEMRTVGLSPN-HISWTILIDACGG 560
P TYN L+KA + + A+ +MR G PN H ++ + C G
Sbjct: 627 PNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELIEEWCEG 680
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 166/365 (45%), Gaps = 35/365 (9%)
Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
KR++ A + + SPN++ +I G+ + +++ + ++ N+
Sbjct: 183 KRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVT 242
Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
+N+L++ + ++ ++M G+ ++ SYN+++ C G +E+ +
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRM---KEVSFVLT 299
Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
+ +G LD TY+T++K + + AL + +ML G+TP+ IT++SLI++ A
Sbjct: 300 EMNRRGY-SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358
Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVAL 468
G + +AM ++M G PN + L+ + + A+R+ R S + V
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418
Query: 469 GEDYDGN------TDRISNMEHKDKQSITNTPNFVPNSH-YSSFDKRF------------ 509
+G+ D I+ +E ++ + +P+ V S S F + +
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGL--SPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 510 ---SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
KP T TY+ L++ C +A L EM VGL P+ ++T LI+A G++
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDL 536
Query: 565 EGALQ 569
E ALQ
Sbjct: 537 EKALQ 541
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/355 (22%), Positives = 156/355 (43%), Gaps = 21/355 (5%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
I + + + K ++ A+ D + PN T++D G ++ + +
Sbjct: 346 ITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLRE 405
Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLE----VYKNMQKLGVMADMASYNILLKACCLA 337
+ + ++ +N+L +N H + +E V ++M++ G+ D+ SY+ +L C +
Sbjct: 406 MNDNGFSPSVVTYNAL--INGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRS 463
Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
+ A + E + KG+ K D TYS++++ F + + + A + E+ML G+ P+
Sbjct: 464 YDVDEALRVKRE---MVEKGI-KPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
T+++LINA G +E+A+ L EM++ G P+ ++L+ + + A RL
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579
Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF------SF 511
++ V Y + SN+E K S+ F + D+ F +
Sbjct: 580 KLFYEES-VPSDVTYHTLIENCSNIEFKSVVSLIK--GFCMKGMMTEADQVFESMLGKNH 636
Query: 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
KP T YNI++ C D + L EM G + ++ L+ A G V
Sbjct: 637 KPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKV 691
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 147/342 (42%), Gaps = 56/342 (16%)
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
G++ L L +D S +++ +I+ G G Y S + + ++++ ++ +
Sbjct: 151 LGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPS 210
Query: 291 IYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
I +N+++N A D + L ++ M+ G+ D+ +YN LL AC + G L E
Sbjct: 211 ILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG---LGDEAE 267
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
+ + G++ D+ TYS +V+ F + + + +M S G P+ +++ L+ A
Sbjct: 268 MVFRTMNDGGIVP-DLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEA 326
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
A +G +++AM +F +M AGC PN+ ++LL ++ ++D +LF S
Sbjct: 327 YAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS----- 381
Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
NTD P TYNIL++
Sbjct: 382 -------NTD-----------------------------------PDAATYNILIEVFGE 399
Query: 528 DYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
Y V L ++M + P+ ++ +I ACG G E A
Sbjct: 400 GGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDA 441
Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 122/270 (45%), Gaps = 26/270 (9%)
Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKS 275
V R+ + + +G+ ++L D K SP++ T+I+ C G D+
Sbjct: 172 VSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGL 231
Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLE-VYKNMQKLGVMADMASYNILLKA 333
++ ++R + + +I +N+L++ A L E V++ M G++ D+ +Y+ L+
Sbjct: 232 LGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV-- 289
Query: 334 CCLAGNTVLAQEIYGEVKHLE---------AKGVLKLDVFTYSTIVKVFADAKWWQMALK 384
E +G+++ LE A G D+ +Y+ +++ +A + + A+
Sbjct: 290 -----------ETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMG 338
Query: 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444
V M +AG TPN T+S L+N +G + LF EM + +P++ NIL++
Sbjct: 339 VFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFG 398
Query: 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDG 474
E F LF + + E Y+G
Sbjct: 399 EGGYFKEVVTLFHDMVEENIEPDM-ETYEG 427
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 12/199 (6%)
Query: 260 RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG 319
R + VC + G+ M S D+ S NV L Y + +K + V+ MQ G
Sbjct: 296 RRLEKVCDLLGE-MASGGSLPDITSYNVLLEAYA-------KSGSIKEAMGVFHQMQAAG 347
Query: 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379
+ +Y++LL +G ++++ E+K D TY+ +++VF + ++
Sbjct: 348 CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDP----DAATYNILIEVFGEGGYF 403
Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
+ + + DM+ + P+ T+ +I AC GL E A + + M P+S+ +
Sbjct: 404 KEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGV 463
Query: 440 LQACVEACQFDRAFRLFRS 458
++A +A ++ A F +
Sbjct: 464 IEAFGQAALYEEALVAFNT 482
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 109/239 (45%), Gaps = 7/239 (2%)
Query: 221 DILFCNFVRE-FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279
DI N + E + K + A+ + + +PN ++++ G G Y R ++
Sbjct: 316 DITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF 375
Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
+++S N + +N L+ V K + ++ +M + + DM +Y ++ AC
Sbjct: 376 LEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKG 435
Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
G A++I ++++ A ++ Y+ +++ F A ++ AL M G P+
Sbjct: 436 GLHEDARKI---LQYMTANDIVPSSK-AYTGVIEAFGQAALYEEALVAFNTMHEVGSNPS 491
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
T+ SL+ + A GLV+++ + ++ +G N N ++A + +F+ A + +
Sbjct: 492 IETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTY 550
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 35/231 (15%)
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
K+++ + K + Y+ ++ + L+V ++M S GV+ + ++++LINA
Sbjct: 129 KYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGR 188
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
G E ++ L + M P+ N ++ AC G
Sbjct: 189 NGRYETSLELLDRMKNEKISPSILTYNTVINACARG----------------------GL 226
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNS---HYSSFDKRFSFK--------PTTTTYN 519
D++G + M H+ Q T N + ++ + F+ P TTY+
Sbjct: 227 DWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYS 286
Query: 520 ILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
L++ +V L+ EM + G P+ S+ +L++A SG+++ A+
Sbjct: 287 HLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAM 337
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 51/207 (24%)
Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNTITWSSLINACANAGLVEQAM 418
KL + ++ + K FA WQ +L++ + M PN ++ +I+ GL+++ +
Sbjct: 102 KLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCL 161
Query: 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478
+F+EM G + L+ A +++ + L DR
Sbjct: 162 EVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELL--------------------DR 201
Query: 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---DYYRVKAL 535
+ N + P+ TYN ++ AC D+ + L
Sbjct: 202 MKNEK---------------------------ISPSILTYNTVINACARGGLDWEGLLGL 234
Query: 536 MNEMRTVGLSPNHISWTILIDACGGSG 562
EMR G+ P+ +++ L+ AC G
Sbjct: 235 FAEMRHEGIQPDIVTYNTLLSACAIRG 261
>sp|Q0WLC6|PP349_ARATH Pentatricopeptide repeat-containing protein At4g34830,
chloroplastic OS=Arabidopsis thaliana
GN=At4g34830/At4g34820 PE=2 SV=2
Length = 1089
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 128/307 (41%), Gaps = 57/307 (18%)
Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLE 310
N++ +ID C G K+ Y LRS+NV + VFN+L++ A D F +
Sbjct: 536 NLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 595
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
+ + D S L+KACC AG A+E+Y + +G ++ Y+ V
Sbjct: 596 AEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEV----YTIAV 651
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
+ + W A + +DM VTP+ + +S+LI+ +A ++++A + ++ G
Sbjct: 652 NSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIR 711
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
+ + L+ AC A + +A L+
Sbjct: 712 LGTISYSSLMGACCNAKDWKKALELYEKI------------------------------- 740
Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNH 548
K +PT +T N L+ A C KA+ ++E++T+GL PN
Sbjct: 741 ----------------KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNT 784
Query: 549 ISWTILI 555
I++++L+
Sbjct: 785 ITYSMLM 791
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 107/222 (48%), Gaps = 11/222 (4%)
Query: 242 RAYDA-----SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
RA+D ++ H P+ ++ C G +++ +Y+ + + V+
Sbjct: 590 RAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTI 649
Query: 297 LMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
+N + D F +YK+M++ V D ++ L+ +AG+ + E +G ++ +
Sbjct: 650 AVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALID---VAGHAKMLDEAFGILQDAK 706
Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
++G+ +L +YS+++ +AK W+ AL++ E + S + P T ++LI A +
Sbjct: 707 SQGI-RLGTISYSSLMGACCNAKDWKKALELYEKIKSIKLRPTISTMNALITALCEGNQL 765
Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
+AM +E+ G +PN+ ++L+ A F+ +F+L
Sbjct: 766 PKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDFEVSFKLL 807
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 32/253 (12%)
Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--------DVFTYST 368
KL + M+++N+L+ C + Q+I G A+GVL+L D Y+T
Sbjct: 460 KLILNPTMSTFNMLMSVCASS------QDIEG------ARGVLRLVQESGMTADCKLYTT 507
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
++ A + +V M ++GV N T+ +LI+ CA AG V +A + +
Sbjct: 508 LISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKN 567
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
+P+ N L+ AC ++ DRAF + E + + D IS +
Sbjct: 568 VKPDRVVFNALISACGQSGAVDRAFDVLAEMK--------AETHPIDPDHISIGAL--MK 617
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
+ N ++ + T Y I + +C D+ ++ +M+ ++P
Sbjct: 618 ACCNAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTP 677
Query: 547 NHISWTILIDACG 559
+ + ++ LID G
Sbjct: 678 DEVFFSALIDVAG 690
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 123/269 (45%), Gaps = 21/269 (7%)
Query: 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVS----------------ALRAYDASKKH 250
+N ++ + P + + VR G + D ++ A++ ++ + H
Sbjct: 267 INARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAH 326
Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFT 308
P+++ +I V G CG ++ ++ +L + + +NSL+ A + +
Sbjct: 327 RCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKV 386
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
EVY+ MQK+G D +YN ++ G LA ++Y ++K L + D TY+
Sbjct: 387 KEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNP---DAITYTV 443
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
++ A A + +ML G+ P T+S+LI A AG E+A F ML++G
Sbjct: 444 LIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSG 503
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
+P++ +++L + + +A+ L+R
Sbjct: 504 TKPDNLAYSVMLDVLLRGNETRKAWGLYR 532
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 154/353 (43%), Gaps = 28/353 (7%)
Query: 224 FCNFVREFGKKRDLVSALRAYD-ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
+C V+ G++ AL ++ + +H SPN R + + G+ G + + E
Sbjct: 159 YCFVVKSVGQE-SWQRALEVFEWLNLRHWHSPN---ARMVAAILGVLGRWNQESLAVEIF 214
Query: 283 RSQNVTLN--IYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAG 338
T+ + V+N++M V + KF+ E+ M++ G + D+ S+N L+ A +G
Sbjct: 215 TRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSG 274
Query: 339 NTV--LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
LA E+ V++ L+ D TY+T++ + A+KV EDM + P
Sbjct: 275 GLTPNLAVELLDMVRN----SGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQP 330
Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
+ T++++I+ GL +A LF E+ G P++ N LL A ++ ++
Sbjct: 331 DLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVY 390
Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
+ ++ G+D + + I +M K Q + Y P
Sbjct: 391 QQ----MQKMGFGKD-EMTYNTIIHMYGKQGQLD------LALQLYKDMKGLSGRNPDAI 439
Query: 517 TYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
TY +L+ + V+A LM+EM VG+ P +++ LI +G E A
Sbjct: 440 TYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEA 492
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 117/254 (46%), Gaps = 14/254 (5%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-DLKFTLE-V 311
P+ T++ C + + ++ED+ + +++ +N++++V L E +
Sbjct: 295 PDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERL 354
Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
+ ++ G D +YN LL A NT +E+Y +++ + G K D TY+TI+
Sbjct: 355 FMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM---GFGK-DEMTYNTIIH 410
Query: 372 VFADAKWWQMALKVKEDMLS-AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
++ +AL++ +DM +G P+ IT++ LI++ A +A L EML G +
Sbjct: 411 MYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIK 470
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ-------VALGEDYDGNTDRISNME 483
P Q + L+ +A + + A F S T+ V L GN R +
Sbjct: 471 PTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGL 530
Query: 484 HKDKQSITNTPNFV 497
++D S +TP++
Sbjct: 531 YRDMISDGHTPSYT 544
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
Y+ I++ + K WQ A V ++ +G TP+ TW+SL++A A G E+A +F M+
Sbjct: 755 YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814
Query: 426 QAGCEPNSQCCNILLQA-CVEA 446
+ G P + NILL A CV+
Sbjct: 815 RDGPSPTVESINILLHALCVDG 836
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/398 (18%), Positives = 160/398 (40%), Gaps = 60/398 (15%)
Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
++ + + +GK++ A ++ +P++ +++ CG Y ++RAI+ +
Sbjct: 754 MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTM 813
Query: 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLEVY---KNMQKLGVMADMASYNILLKACCLAGN 339
+ + N L++ D + E+Y + +Q +G +S ++L A AGN
Sbjct: 814 MRDGPSPTVESINILLHALCVDGRLE-ELYVVVEELQDMGFKISKSSILLMLDAFARAGN 872
Query: 340 TVLAQEIYGEVK---------------HLEAKGV----------------LKLDVFTYST 368
++IY +K L KG K+++ +++
Sbjct: 873 IFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNS 932
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
++K++ + ++ ++V + + G+ P+ T+++LI E+ L ++M G
Sbjct: 933 MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLG 992
Query: 429 CEPNSQCCNILL-----QACVEACQ------FDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
+P L+ Q C+E + + +L RS+ + +++ D +
Sbjct: 993 LDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052
Query: 478 R-ISNMEHKDKQSITNTPNFVPNSHYSSFD-----------KRFSFKPTTTTYNILMKAC 525
+ + M++ + T + + S+ SS + K + TT Y+ ++ A
Sbjct: 1053 KLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAY 1112
Query: 526 --CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561
DY + EM+ GL P+H WT + A S
Sbjct: 1113 LRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFS 1150
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/324 (22%), Positives = 120/324 (37%), Gaps = 57/324 (17%)
Query: 250 HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKF 307
H + MY II+ G + K+ ++ +LR T ++ +NSLM+ A +
Sbjct: 748 HFACSPMYT--DIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYER 805
Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
++ M + G + S NILL A C+ G +E+Y V+ L+ G K+ +
Sbjct: 806 ARAIFNTMMRDGPSPTVESINILLHALCVDGRL---EELYVVVEELQDMG-FKISKSSIL 861
Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
++ FA A K+ M +AG P + +I V A + EM +A
Sbjct: 862 LMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEA 921
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
+ N +L+ + + ++++ RI
Sbjct: 922 NFKVELAIWNSMLKMYTAIEDYKKTVQVYQ--------------------RI-------- 953
Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
K +P TTYN L+ C D + LM +MR +GL
Sbjct: 954 -------------------KETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD 994
Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
P ++ LI A G +E A Q
Sbjct: 995 PKLDTYKSLISAFGKQKCLEQAEQ 1018
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 136/323 (42%), Gaps = 22/323 (6%)
Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
+ P ++ +ID GD +R ++E+++ + + + +NS+++ L T+
Sbjct: 258 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
++ M+ + D+ +YN L+ C G + E Y E+K G LK +V +YST+
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK---GNG-LKPNVVSYSTL 373
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
V F Q A+K DM G+ PN T++SLI+A G + A L EMLQ G
Sbjct: 374 VDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGV 433
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ- 488
E N L+ +A + A LF + L Y+ ++ D+
Sbjct: 434 EWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLAS-YNALIHGFVKAKNMDRAL 492
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
+ N K KP Y + C+ K +MNEM+ G+
Sbjct: 493 ELLNEL------------KGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKA 540
Query: 547 NHISWTILIDACGGSGNVEGALQ 569
N + +T L+DA SGN L
Sbjct: 541 NSLIYTTLMDAYFKSGNPTEGLH 563
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/353 (21%), Positives = 140/353 (39%), Gaps = 56/353 (15%)
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
+ V F K+ + A++ Y ++ PN Y ++ID G+ + + ++
Sbjct: 370 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEML 429
Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
V N+ + +L++ +A +K E++ M GV+ ++ASYN L+ A N
Sbjct: 430 QVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMD 489
Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
A E+ E+K +G+ K D+ Y T + + + A V +M G+ N++ +
Sbjct: 490 RALELLNELK---GRGI-KPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIY 545
Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
++L++A +G + +HL +EM + E +L+ + +A F
Sbjct: 546 TTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYF----- 600
Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
+RISN F + + +
Sbjct: 601 ---------------NRISN--------------------------DFGLQANAAIFTAM 619
Query: 522 MKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
+ C D +V+A L +M GL P+ ++T L+D GNV AL R
Sbjct: 620 IDGLCKD-NQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALR 671
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 110/224 (49%), Gaps = 7/224 (3%)
Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
+++ +VP + + + + FGK L + ++ K P++ +I+ G
Sbjct: 288 MKFRGLVPDT-VTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFG 346
Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYN 328
Y +++ + N+ +++L++ + ++ ++ Y +M+++G++ + +Y
Sbjct: 347 KLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYT 406
Query: 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
L+ A C GN A + E+ + GV + +V TY+ ++ DA+ + A ++
Sbjct: 407 SLIDANCKIGNLSDAFRLGNEMLQV---GV-EWNVVTYTALIDGLCDAERMKEAEELFGK 462
Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
M +AGV PN ++++LI+ A +++A+ L E+ G +P+
Sbjct: 463 MDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 506
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 16/186 (8%)
Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
+DM+ AG P T++ +I+ G VE A LFEEM G P++ N ++ +
Sbjct: 251 KDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKV 310
Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS-NMEHKDKQSITNTPNFVPNSHYSSF 505
+ D F +D D I+ N P + Y
Sbjct: 311 GRLDDTVCFFEEM----------KDMCCEPDVITYNALINCFCKFGKLP--IGLEFYREM 358
Query: 506 DKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGN 563
K KP +Y+ L+ A C + +A+ +MR VGL PN ++T LIDA GN
Sbjct: 359 -KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGN 417
Query: 564 VEGALQ 569
+ A +
Sbjct: 418 LSDAFR 423
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 29/202 (14%)
Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
P + +L + + G++E+A+ F +M + P ++ CN LL + + D R
Sbjct: 189 VPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKR 248
Query: 455 LFRS----------WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504
F+ +T + + ++ D R E K + + +T + NS
Sbjct: 249 FFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTY--NSMIDG 306
Query: 505 FDKRFSFKPTTTTYNILMKACC-TDYYRVKALMN----------------EMRTVGLSPN 547
F K T + + CC D AL+N EM+ GL PN
Sbjct: 307 FGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPN 366
Query: 548 HISWTILIDACGGSGNVEGALQ 569
+S++ L+DA G ++ A++
Sbjct: 367 VVSYSTLVDAFCKEGMMQQAIK 388
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
AL +++ M G+ + + ++SL+ ++ +++A EEM+ G P+ C +L+
Sbjct: 667 ALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLK 726
Query: 442 ACVEACQFDRAFRL 455
E D A L
Sbjct: 727 KHYELGCIDEAVEL 740
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 150/360 (41%), Gaps = 63/360 (17%)
Query: 222 ILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
I++ + ++ F G+K D + Y SP++ + T +D G+ K RA+
Sbjct: 483 IVYTSLIKNFFNHGRKED---GHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539
Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
+E+++++ + ++ L++ + A T E++ +M++ G + D +YNI++ C
Sbjct: 540 FEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCK 599
Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
G A ++ E+K KG + V TY +++ A A + E+ S +
Sbjct: 600 CGKVNKAYQLLEEMK---TKG-FEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL 655
Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
N + +SSLI+ G +++A + EE++Q G PN N LL A V+A + + A F
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCF 715
Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
+S K P
Sbjct: 716 QSM-----------------------------------------------KELKCTPNQV 728
Query: 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV--EGALQCRF 572
TY IL+ C + + EM+ G+ P+ IS+T +I +GN+ GAL RF
Sbjct: 729 TYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRF 788
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 41/222 (18%)
Query: 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296
L A ++ +K N+ I ++ID G G ++ I E+L + +T N+Y +NS
Sbjct: 638 LDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNS 697
Query: 297 LMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354
L++ V A ++ L +++M++L + +Y IL+ C
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLC------------------- 738
Query: 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414
K+ F + + +WQ +M G+ P+TI+++++I+ A AG +
Sbjct: 739 -----KVRKFNKAFV--------FWQ-------EMQKQGMKPSTISYTTMISGLAKAGNI 778
Query: 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
+A LF+ G P+S C N +++ + AF LF
Sbjct: 779 AEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLF 820
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 7/236 (2%)
Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
LF +R F K+ + SAL D K ++ + ID G G + + ++
Sbjct: 205 LFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEI 264
Query: 283 RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
+ + + + S++ V A+ L +E++++++K + +YN ++ AG
Sbjct: 265 EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKF 324
Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
E Y ++ AKG + V Y+ I+ ALKV E+M PN T
Sbjct: 325 ---DEAYSLLERQRAKGSIP-SVIAYNCILTCLRKMGKVDEALKVFEEM-KKDAAPNLST 379
Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
++ LI+ AG ++ A L + M +AG PN + NI++ ++ + D A +F
Sbjct: 380 YNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMF 435
Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 121/289 (41%), Gaps = 31/289 (10%)
Query: 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
++E+++ ++ N+ +N L+++ A L E+ +MQK G+ ++ + NI++ C
Sbjct: 365 VFEEMK-KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLC 423
Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
+ A ++ E+ + V D T+ +++ A KV E ML +
Sbjct: 424 KSQKLDEACAMFEEMDY----KVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCR 479
Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
N+I ++SLI N G E ++++M+ C P+ Q N + +A + ++ +
Sbjct: 480 TNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539
Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT- 514
F + + + S + H ++ N Y F +S K
Sbjct: 540 FEEIKARR--------FVPDARSYSILIHGLIKA------GFANETYELF---YSMKEQG 582
Query: 515 ----TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
T YNI++ C + L+ EM+T G P +++ +ID
Sbjct: 583 CVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDG 631
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 116/295 (39%), Gaps = 32/295 (10%)
Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
VN D+ TL ++ MQ+LG + + L++ G A + E+K L
Sbjct: 181 VNHSDMMLTL--FQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMK----SSSL 234
Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
D+ Y+ + F MA K ++ + G+ P+ +T++S+I A +++A+
Sbjct: 235 DADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVE 294
Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD------ 473
+FE + + P + N ++ A +FD A+ L +K + Y+
Sbjct: 295 MFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQR-AKGSIPSVIAYNCILTCL 353
Query: 474 ---GNTD---RISNMEHKDKQSITNTPNFVPN--SHYSSFDKRFSFK---------PTTT 516
G D ++ KD +T N + + D F + P
Sbjct: 354 RKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVR 413
Query: 517 TYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
T NI++ C A+ EM +P+ I++ LID G G V+ A +
Sbjct: 414 TVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYK 468
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 150/326 (46%), Gaps = 41/326 (12%)
Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
P+ + R++ID G+C G+ ++ A++ + + + N+ ++N+L+ N +
Sbjct: 354 PDQFTYRSLID--GLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAA 411
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
++ M + G++ ++ ++NIL+ C G A G VK + +KG D+FT++ +
Sbjct: 412 QLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDAD---GLVKVMISKGYFP-DIFTFNIL 467
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+ ++ + AL++ + ML GV P+ T++SL+N E M ++ M++ GC
Sbjct: 468 IHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGC 527
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG---NTDRISNME 483
PN NILL++ + D A L ++ +++ V G DG N D
Sbjct: 528 APNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDL----- 582
Query: 484 HKDKQSITNTPNFVPNSHYSSFDKR---FSFKPTTTTYNILMKACCT--DYYRVKALMNE 538
+ Y+ F K + +T TYNI++ A + + L E
Sbjct: 583 ---------------DGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQE 627
Query: 539 MRTVGLSPNHISWTILIDACGGSGNV 564
M L P+ ++ +++D +GNV
Sbjct: 628 MVDRCLGPDGYTYRLMVDGFCKTGNV 653
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 155/382 (40%), Gaps = 53/382 (13%)
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
F +R KK D+ + D K PN++ I G+C G+ + +
Sbjct: 219 FNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQ--GLCQRGELDGAVRMVGC 276
Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFT-LEVY-KNMQKLGVMADMASYNILLKACCLAGN 339
L Q ++ +N+L+ + KF EVY M G+ D +YN L+ C G
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGM 336
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
LA+ I G+ G + D FTY +++ AL + + L G+ PN I
Sbjct: 337 VQLAERIVGDAVF---NGFVP-DQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVI 392
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFRLFRS 458
+++LI +N G++ +A L EM + G P Q NIL+ C C D +
Sbjct: 393 LYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSD-------A 445
Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT-------------PN-FVPNSHYSS 504
L K ++ G D T I + + + N P+ + NS +
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505
Query: 505 FDKRFSFK---------------PTTTTYNILMKACCTDYYR----VKALMNEMRTVGLS 545
K F+ P T+NIL+++ C YR L+ EM+ ++
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCR--YRKLDEALGLLEEMKNKSVN 563
Query: 546 PNHISWTILIDACGGSGNVEGA 567
P+ +++ LID +G+++GA
Sbjct: 564 PDAVTFGTLIDGFCKNGDLDGA 585
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 133/335 (39%), Gaps = 47/335 (14%)
Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASY 327
G ++ ++E + + ++ +N++M+V F +VY M+ G+ D+ S+
Sbjct: 90 GKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSF 149
Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
I +K+ C A + + ++ ++G +++V Y T+V F + + ++
Sbjct: 150 TIRMKSFCKTSRPHAALRL---LNNMSSQGC-EMNVVAYCTVVGGFYEENFKAEGYELFG 205
Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447
ML++GV+ T++ L+ G V++ L +++++ G PN N+ +Q +
Sbjct: 206 KMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRG 265
Query: 448 QFDRAFR-----------------------LFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
+ D A R L ++ + +V LG ++ N
Sbjct: 266 ELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLG--------KMVNEGL 317
Query: 485 KDKQSITNT-------PNFVPNSHYSSFDKRFS-FKPTTTTYNILMKACC--TDYYRVKA 534
+ NT V + D F+ F P TY L+ C + R A
Sbjct: 318 EPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALA 377
Query: 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
L NE G+ PN I + LI G + A Q
Sbjct: 378 LFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQ 412
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 7/160 (4%)
Query: 277 AIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQK-LGVMADMASYNILLKA 333
+ E++++++V + F +L++ DL +++ M++ V + +YNI++ A
Sbjct: 552 GLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHA 611
Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
N +A++++ E+ L D +TY +V F + K +M+ G
Sbjct: 612 FTEKLNVTMAEKLFQEM----VDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENG 667
Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
P+ T +IN V +A + M+Q G P +
Sbjct: 668 FIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEA 707
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 17/145 (11%)
Query: 305 LKFTLEVYKN-MQKLGVMADM-ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL--- 359
K TL Y++ ++KLG A +L+ GN +L G +K+ KG +
Sbjct: 36 FKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQEA 95
Query: 360 -----KLD-------VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
++D VF+Y+ I+ V D+ ++ A KV M G+TP+ +++ + +
Sbjct: 96 VNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKS 155
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPN 432
A+ L M GCE N
Sbjct: 156 FCKTSRPHAALRLLNNMSSQGCEMN 180
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 143/343 (41%), Gaps = 50/343 (14%)
Query: 243 AYDASKKHLSSPNM--YICRTIIDVCGICGDYMK--------SRAIYEDLRSQNVTLNIY 292
AY KK + +M Y+ I+ + ICGD + Y ++ + V LN
Sbjct: 391 AYKLLKKMVKCGHMPGYVVYNIL-IGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKI 449
Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
+S +A + V + M G + D ++Y+ +L C A LA ++ E+
Sbjct: 450 NVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM 509
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
K +G L DV+TY+ +V F A + A K +M G TPN +T+++LI+A
Sbjct: 510 K----RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
A V A LFE ML GC PN + L+ +A Q ++A ++F SK
Sbjct: 566 AKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK------- 618
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
+ P+ + ++ +D S +P TY L+ C +
Sbjct: 619 ---------------------DVPDV--DMYFKQYDDN-SERPNVVTYGALLDGFCKSHR 654
Query: 531 --RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
+ L++ M G PN I + LID G ++ A + +
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 150/346 (43%), Gaps = 53/346 (15%)
Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASY 327
G Y K+ ++ ++ Q + ++ ++N NA ++ +++ M++ G++AD+ +Y
Sbjct: 462 GKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTY 521
Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
I++ + C AG A++ + E++ + +V TY+ ++ + AK A ++ E
Sbjct: 522 TIMVDSFCKAGLIEQARKWFNEMREVGCTP----NVVTYTALIHAYLKAKKVSYANELFE 577
Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-----------NSQCC 436
MLS G PN +T+S+LI+ AG VE+A +FE M + P NS+
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERP 637
Query: 437 NI-----LLQACVEACQFDRAFRLFRSWTLS---KTQVALGEDYDGNTDRISNMEHKDKQ 488
N+ LL ++ + + A +L + ++ Q+ DG ++ ++ +
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLC-KVGKLDEAQEV 696
Query: 489 SITNTPNFVPNSHY---SSFDKRFSFK------------------PTTTTYNILMKACC- 526
+ + P + Y S D+ F K P Y ++ C
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756
Query: 527 ---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
TD LM M G PN +++T +ID G G +E L+
Sbjct: 757 VGKTD--EAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLE 800
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 18/238 (7%)
Query: 199 QLCVNK--PDVNLAIR-YACIVPRADIL-FCNFVREFGKKRDLVSALRAYDASKKHLSSP 254
++C +K PDV++ + Y R +++ + + F K + A + DA P
Sbjct: 613 RMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEP 672
Query: 255 NMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFT 308
N + +ID G+C G +++ + ++ +Y ++SL++ V DL
Sbjct: 673 NQIVYDALID--GLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDL--A 728
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
+V M + ++ Y ++ C G T E Y ++ +E KG + +V TY+
Sbjct: 729 SKVLSKMLENSCAPNVVIYTEMIDGLCKVGKT---DEAYKLMQMMEEKGC-QPNVVTYTA 784
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426
++ F + L++ E M S GV PN +T+ LI+ C G ++ A +L EEM Q
Sbjct: 785 MIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQ 842
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 106/237 (44%), Gaps = 39/237 (16%)
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLN 290
K++DL S + ++ +PN+ I +ID G+C G ++ + + + + N
Sbjct: 723 KRQDLAS--KVLSKMLENSCAPNVVIYTEMID--GLCKVGKTDEAYKLMQMMEEKGCQPN 778
Query: 291 IYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
+ + ++++ ++ LE+ + M GV + +Y +L+ CC G +A +
Sbjct: 779 VVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838
Query: 349 EVKH---------------------LEAKGVL----KLDVFTYSTIVKVFAD----AKWW 379
E+K +E+ G+L + D + ++ ++ D A+
Sbjct: 839 EMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRL 898
Query: 380 QMALKVKEDM--LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
+MAL++ E++ SA + + T++SLI + A VE A LF EM + G P Q
Sbjct: 899 EMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQ 955
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 95/254 (37%), Gaps = 63/254 (24%)
Query: 315 MQKLGVMADM------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
+++LG + D ++YN L++A A A I+ E+ + L++D FT
Sbjct: 220 LEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREM----SLANLRMDGFTLRC 275
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
W+ AL + E + P+T+ ++ LI+ A L E+AM M
Sbjct: 276 FAYSLCKVGKWREALTLVE---TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATS 332
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
C PN + LL C L+K Q+ G R+ NM +
Sbjct: 333 CLPNVVTYSTLLCGC-----------------LNKKQL-------GRCKRVLNMMMME-- 366
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
P+ +N L+ A CT D+ L+ +M G P
Sbjct: 367 ---------------------GCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMP 405
Query: 547 NHISWTILIDA-CG 559
++ + ILI + CG
Sbjct: 406 GYVVYNILIGSICG 419
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 73/204 (35%), Gaps = 41/204 (20%)
Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
N+ + +L++ +H ++ ++ M G + Y+ L+ C G AQE+
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS---------------- 391
E+ L +TYS+++ + K +A KV ML
Sbjct: 698 TEMSEHGFPATL----YTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDG 753
Query: 392 -------------------AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
G PN +T++++I+ G +E + L E M G PN
Sbjct: 754 LCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPN 813
Query: 433 SQCCNILLQACVEACQFDRAFRLF 456
+L+ C + D A L
Sbjct: 814 YVTYRVLIDHCCKNGALDVAHNLL 837
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 124/308 (40%), Gaps = 41/308 (13%)
Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
+LR TL + + SL V TL +N + D Y L+ C A
Sbjct: 265 NLRMDGFTLRCFAY-SLCKVGKWREALTLVETENF-----VPDTVFYTKLISGLCEAS-- 316
Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
L +E + + A L +V TYST++ + K +V M+ G P+
Sbjct: 317 -LFEEAMDFLNRMRATSCLP-NVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKI 374
Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEA----CQF----DR 451
++SL++A +G A L ++M++ G P NIL+ + C + C ++
Sbjct: 375 FNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEK 434
Query: 452 AFR--LFRSWTLSKTQVA-------LGEDYDGNTDRISNMEHK----DKQSITNTPNFVP 498
A+ L L+K V+ Y+ I M + D + + N++
Sbjct: 435 AYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLC 494
Query: 499 NSH-----YSSFD--KRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHI 549
N+ + F+ KR TY I++ + C + + NEMR VG +PN +
Sbjct: 495 NASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVV 554
Query: 550 SWTILIDA 557
++T LI A
Sbjct: 555 TYTALIHA 562
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 139/305 (45%), Gaps = 23/305 (7%)
Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGV 320
+ G+C G + + ++ +N+ ++ F++L++V + K E+Y M G+
Sbjct: 287 IGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI 346
Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
D +YN L+ C A +++ + +KG + D+ TYS ++ + AK
Sbjct: 347 APDTITYNSLIDGFCKENCLHEANQMF---DLMVSKGC-EPDIVTYSILINSYCKAKRVD 402
Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
+++ ++ S G+ PNTIT+++L+ +G + A LF+EM+ G P+ ILL
Sbjct: 403 DGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILL 462
Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
+ + ++A +F S+ + +G Y+ + N D S
Sbjct: 463 DGLCDNGELNKALEIFEKMQKSRMTLGIGI-YNIIIHGMCNASKVDDAW----------S 511
Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA- 557
+ S + KP TYN+++ C +A L +M+ G +P+ ++ ILI A
Sbjct: 512 LFCSLSDK-GVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 570
Query: 558 CGGSG 562
GGSG
Sbjct: 571 LGGSG 575
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 129/296 (43%), Gaps = 55/296 (18%)
Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACC 335
++ + +N+ ++ ++ +++ D F L ++ M+ G+ AD+ +Y+ L+ C
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 291
Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
G ++ ++ + + ++ DV T+S ++ VF A ++ +M++ G+
Sbjct: 292 NDGKWDDGAKM---LREMIGRNIIP-DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIA 347
Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
P+TIT++SLI+ + +A +F+ M+ GCEP+ +IL+ + +A + D RL
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407
Query: 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
FR ++ +PN T
Sbjct: 408 FRE--------------------------------ISSKGLIPN---------------T 420
Query: 516 TTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
TYN L+ C K L EM + G+ P+ +++ IL+D +G + AL+
Sbjct: 421 ITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALE 476
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 110/246 (44%), Gaps = 11/246 (4%)
Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YM 273
I+P + F + F K+ L+ A Y+ +P+ ++ID G C +
Sbjct: 311 IIPDV-VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID--GFCKENCLH 367
Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
++ +++ + S+ +I ++ L+N A + + +++ + G++ + +YN L+
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427
Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
C +G A+E++ E + ++GV V TY ++ D AL++ E M
Sbjct: 428 LGFCQSGKLNAAKELFQE---MVSRGVPP-SVVTYGILLDGLCDNGELNKALEIFEKMQK 483
Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
+ +T ++ +I+ NA V+ A LF + G +P+ N+++ +
Sbjct: 484 SRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSE 543
Query: 452 AFRLFR 457
A LFR
Sbjct: 544 ADMLFR 549
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 117/291 (40%), Gaps = 31/291 (10%)
Query: 294 FNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
FN L + A ++ L + K M+ G+ DM + I++ C + A + G
Sbjct: 73 FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAW 132
Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
L + D T+ST+V F A+ + + M+ P+ +T S+LIN
Sbjct: 133 KLGYEP----DTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLK 188
Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-----TLSKTQV 466
G V +A+ L + M++ G +P+ +L ++ A LFR S Q
Sbjct: 189 GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQY 248
Query: 467 ALGED---YDGNTDR----ISNMEHKD-KQSITNTPNFVP----NSHYSSFDKRF----- 509
++ D DG+ D + ME K K + + + + + K
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 308
Query: 510 -SFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
+ P T++ L+ + K L NEM T G++P+ I++ LID
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDG 359
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 13/205 (6%)
Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
PN T+ V G C G ++ +++++ S+ V ++ + L++ + +L L
Sbjct: 418 PNTITYNTL--VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 475
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
E+++ MQK + + YNI++ C A A ++ L KGV K DV TY+ +
Sbjct: 476 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFC---SLSDKGV-KPDVVTYNVM 531
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAG 428
+ A + M G TP+ T++ LI A +GL+ ++ L EEM G
Sbjct: 532 IGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLI-SSVELIEEMKVCG 590
Query: 429 CEPNSQCCNILLQACVEACQFDRAF 453
+S +++ + + D++F
Sbjct: 591 FSADSSTIKMVIDMLSDR-RLDKSF 614
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 106/485 (21%), Positives = 203/485 (41%), Gaps = 98/485 (20%)
Query: 112 SLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP--------LELFDGSG-----FKLL 158
SL+ +S +V + ID V+G+LK++ LG+ P + + +G +++L
Sbjct: 222 SLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEIL 281
Query: 159 KNECQRLLDSG---EVEMFVGLMEVLEEFRLPVKELD---EEFRIVQLCVNKPDVNLAIR 212
K R+ D G +V + L++ L ++LD E F ++ +KPD +
Sbjct: 282 K----RMDDEGCGPDVVTYTVLIDAL----CTARKLDCAKEVFEKMKTGRHKPD---RVT 330
Query: 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
Y ++ R F RDL S + + +K P++ ++D G++
Sbjct: 331 YITLLDR-----------FSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNF 379
Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
++ + +R Q + N++ +N+L+ + H L LE++ NM+ LGV +Y +
Sbjct: 380 GEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVF 439
Query: 331 LKACCLAGNTVLAQEIYGEVKHLE-AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
+ +G++V A E + ++K A ++ + YS + K D + Q+ +K+
Sbjct: 440 IDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYS-LAKAGRDREAKQIFYGLKD-- 496
Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
G+ P+++T++ ++ + G +++A+ L EM++ GCEP+ N L+ +A +
Sbjct: 497 --IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRV 554
Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
D A+++F K
Sbjct: 555 DEAWKMFMRM-----------------------------------------------KEM 567
Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
KPT TYN L+ + +A L M G PN I++ L D + V A
Sbjct: 568 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLA 627
Query: 568 LQCRF 572
L+ F
Sbjct: 628 LKMLF 632
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 132/300 (44%), Gaps = 23/300 (7%)
Query: 275 SRAIYEDL-RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
+R ++E + V + +N L+ + A ++ +V+ ++ G + D+A+YN LL
Sbjct: 768 ARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLL 827
Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
A +G E+Y E+ E + + T++ ++ A AL + D++S
Sbjct: 828 DAYGKSGKIDELFELYKEMSTHECEA----NTITHNIVISGLVKAGNVDDALDLYYDLMS 883
Query: 392 -AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
+P T+ LI+ + +G + +A LFE ML GC PN NIL+ +A + D
Sbjct: 884 DRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEAD 943
Query: 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510
A LF+ + L + Y D + + D+ HY K
Sbjct: 944 AACALFKRMVKEGVRPDL-KTYSVLVDCLCMVGRVDE-----------GLHYFKELKESG 991
Query: 511 FKPTTTTYNILMKACCTDYYRVKALM--NEMRTV-GLSPNHISWTILIDACGGSGNVEGA 567
P YN+++ + +AL+ NEM+T G++P+ ++ LI G +G VE A
Sbjct: 992 LNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEA 1051
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 7/218 (3%)
Query: 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--N 301
YD SP +ID G +++ ++E + N ++N L+N
Sbjct: 879 YDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGK 938
Query: 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361
A + ++K M K GV D+ +Y++L+ C+ G + E+K + L
Sbjct: 939 AGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELK----ESGLNP 994
Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDM-LSAGVTPNTITWSSLINACANAGLVEQAMHL 420
DV Y+ I+ + + AL + +M S G+TP+ T++SLI AG+VE+A +
Sbjct: 995 DVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKI 1054
Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
+ E+ +AG EPN N L++ + + + A+ ++++
Sbjct: 1055 YNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQT 1092
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 103/233 (44%), Gaps = 6/233 (2%)
Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
F+ +GK D VSAL ++ K +PN+ C + G +++ I+ L+
Sbjct: 439 FIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIG 498
Query: 287 VTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
+ + +N +M + ++ +++ M + G D+ N L+ A A
Sbjct: 499 LVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAW 558
Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
+++ +K ++ LK V TY+T++ Q A+++ E M+ G PNTIT+++L
Sbjct: 559 KMFMRMKEMK----LKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 614
Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
+ V A+ + +M+ GC P+ N ++ V+ Q A F
Sbjct: 615 FDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFH 667
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 92/256 (35%), Gaps = 60/256 (23%)
Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL------------DVFTYSTIVKVF 373
S ++ C G+++L I KH G L + TY+ ++
Sbjct: 736 SERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGL 795
Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
+A ++A V + S G P+ T++ L++A +G +++ L++EM CE N+
Sbjct: 796 LEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANT 855
Query: 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493
NI++ V+A D A L+ YD +DR
Sbjct: 856 ITHNIVISGLVKAGNVDDALDLY---------------YDLMSDR--------------- 885
Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISW 551
F PT TY L+ Y K L M G PN +
Sbjct: 886 ----------------DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIY 929
Query: 552 TILIDACGGSGNVEGA 567
ILI+ G +G + A
Sbjct: 930 NILINGFGKAGEADAA 945
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 90/183 (49%), Gaps = 7/183 (3%)
Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286
+ FGK + +A + K P++ ++D + G + +++L+
Sbjct: 932 LINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG 991
Query: 287 VTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ-KLGVMADMASYNILLKACCLAGNTVLA 343
+ ++ +N ++N +H L+ L ++ M+ G+ D+ +YN L+ +AG A
Sbjct: 992 LNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEA 1051
Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
+IY E++ + L+ +VFT++ +++ ++ + + A V + M++ G +PNT T+
Sbjct: 1052 GKIYNEIQ----RAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQ 1107
Query: 404 LIN 406
L N
Sbjct: 1108 LPN 1110
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 22/257 (8%)
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
V+ MQK + D +Y + K+ + G L Q Y K E VL + ++Y+ ++
Sbjct: 140 VFDLMQKRIIKRDTNTYLTIFKSLSVKGG--LKQAPYALRKMREFGFVL--NAYSYNGLI 195
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
+ +++ A++V M+ G P+ T+SSL+ ++ M L +EM G +
Sbjct: 196 HLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLK 255
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
PN I ++ A + + A+ + + G D T I + K
Sbjct: 256 PNVYTFTICIRVLGRAGKINEAYEILKRM----DDEGCGPDVVTYTVLIDALCTARKLDC 311
Query: 491 TNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
F+K + KP TY L+ D VK +EM G P
Sbjct: 312 AK----------EVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVP 361
Query: 547 NHISWTILIDACGGSGN 563
+ +++TIL+DA +GN
Sbjct: 362 DVVTFTILVDALCKAGN 378
Score = 39.3 bits (90), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 510 SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
F+P+ TY+ LM D V L+ EM T+GL PN ++TI I G +G + A
Sbjct: 218 GFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEA 277
Query: 568 LQ 569
+
Sbjct: 278 YE 279
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/354 (20%), Positives = 137/354 (38%), Gaps = 87/354 (24%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313
P + T++ + G +R I +++S+ ++ +N +++ ++ + + EV +
Sbjct: 258 PTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRAS-EVLR 316
Query: 314 NMQKLGVMADMASYNILLKACCLAG----------------------------------N 339
M+++G++ D SYNIL++ C G N
Sbjct: 317 EMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMEN 376
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
+ A EI ++ + KG++ LD TY+ ++ + + A + ++M++ G+ P
Sbjct: 377 KIEAAEIL--IREIREKGIV-LDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQF 433
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
T++SLI +A LFE+++ G +P+ N L+ DRAF L +
Sbjct: 434 TYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEM 493
Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
+ S P TYN
Sbjct: 494 DM-----------------------------------------------MSINPDDVTYN 506
Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
LM+ C + + + LM EM+ G+ P+HIS+ LI G+ + A R
Sbjct: 507 CLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVR 560
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 135/341 (39%), Gaps = 58/341 (17%)
Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
++ ILF VR + R + A+ + K+ P C I+ + +
Sbjct: 153 KSTILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVF 212
Query: 279 YEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
Y D+ + N+Y FN ++NV LK M+ G+ + +YN L++ L
Sbjct: 213 YADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSL 272
Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
G A+ I E+K +KG + D+ TY+ I+ + A +V +M G+ P
Sbjct: 273 RGRIEGARLIISEMK---SKG-FQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVP 325
Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
++++++ LI C+N G +E A +EM++ G P N L+ + + A L
Sbjct: 326 DSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILI 385
Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
R E ++K + + +
Sbjct: 386 R-------------------------EIREKGIVLD----------------------SV 398
Query: 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILI 555
TYNIL+ C D + AL +EM T G+ P ++T LI
Sbjct: 399 TYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLI 439
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 141/320 (44%), Gaps = 34/320 (10%)
Query: 135 VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEM-FVGLMEVLEEFRLPVKELDE 193
VL+++ E+G+ P D + +L C ++G++EM F E++++ +P
Sbjct: 314 VLREMKEIGLVP----DSVSYNILIRGCS---NNGDLEMAFAYRDEMVKQGMVPT----- 361
Query: 194 EFRIVQLCVNKPDVNLAIRYACIVPRA---------DILFCNFVREFGKKRDLVSALRAY 244
F ++ + I A I+ R + + + + + D A +
Sbjct: 362 -FYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALH 420
Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----V 300
D P + ++I V ++ ++E + + + ++ + N+LM+ +
Sbjct: 421 DEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAI 480
Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
D F+L K M + + D +YN L++ C G A+E+ GE+K +G+ K
Sbjct: 481 GNMDRAFSL--LKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKR---RGI-K 534
Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
D +Y+T++ ++ + A V+++MLS G P +T+++L+ + E A L
Sbjct: 535 PDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEEL 594
Query: 421 FEEMLQAGCEPN-SQCCNIL 439
EM G PN S C+++
Sbjct: 595 LREMKSEGIVPNDSSFCSVI 614
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
P++ + T++D G+ ++ ++ +++ ++ + +N LM + KF E+
Sbjct: 465 PDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEAREL 524
Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
M++ G+ D SYN L+ G+T A + E+ L L TY+ ++K
Sbjct: 525 MGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTL----LTYNALLK 580
Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
+ + ++A ++ +M S G+ PN ++ S+I A +N
Sbjct: 581 GLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSN 619
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 146/339 (43%), Gaps = 30/339 (8%)
Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
AL D + P + T+++ G+C G + + + + N + +
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVN--GLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPV 234
Query: 298 MNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
+NV + +E+ + M++ + D Y+I++ C G+ A ++ E +E
Sbjct: 235 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE---MEI 291
Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
KG K D+ TY+T++ F +A W K+ DM+ ++PN +T+S LI++ G +
Sbjct: 292 KG-FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLR 350
Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
+A L +EM+Q G PN+ N L+ F + RL + + ++ G D D
Sbjct: 351 EADQLLKEMMQRGIAPNTITYNSLIDG------FCKENRLEEAIQMVDLMISKGCDPDIM 404
Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK---PTTTTYNILMKACCTD--YY 530
T I + I + + S + T TYN L++ C
Sbjct: 405 TFNILINGYCKANRIDDGLELF---------REMSLRGVIANTVTYNTLVQGFCQSGKLE 455
Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
K L EM + + P+ +S+ IL+D +G +E AL+
Sbjct: 456 VAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALE 494
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 101/456 (22%), Positives = 198/456 (43%), Gaps = 50/456 (10%)
Query: 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL 186
G++ V ++ ++ E G P E+ G ++ C+ SG+ + + L+ +EE +
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVM---CK----SGQTALAMELLRKMEERNI 259
Query: 187 PVKELDEEFRIVQLCVNKP---DVNLAIRYACIVPRADIL--------FCNFVREFGKKR 235
+ + I LC + NL +ADI+ FCN G+
Sbjct: 260 KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNA----GRWD 315
Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295
D LR D K+ +S PN+ +ID G ++ + +++ + + N +N
Sbjct: 316 DGAKLLR--DMIKRKIS-PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYN 372
Query: 296 SLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353
SL++ + L+ +++ M G D+ ++NIL+ C A E++ + +
Sbjct: 373 SLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF---REM 429
Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
+GV+ + TY+T+V+ F + ++A K+ ++M+S V P+ +++ L++ + G
Sbjct: 430 SLRGVIA-NTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGE 488
Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473
+E+A+ +F ++ ++ E + I++ A + D A+ LF S L ++ D
Sbjct: 489 LEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKL----DAR 544
Query: 474 GNTDRISNMEHKDKQSITNT--PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR 531
IS + KD S + H P TYNIL++A D
Sbjct: 545 AYNIMISELCRKDSLSKADILFRKMTEEGH----------APDELTYNILIRAHLGDDDA 594
Query: 532 VKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
A L+ EM++ G P +S ++ SG ++
Sbjct: 595 TTAAELIEEMKSSGF-PADVSTVKMVINMLSSGELD 629
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 114/297 (38%), Gaps = 20/297 (6%)
Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
A+ + + S+ + +IY + ++N L + + KLG D +N LL
Sbjct: 109 ALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGL 168
Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
CL A E+ + + K L T +T+V A+ + + M+ G
Sbjct: 169 CLECRVSEALELVDRMVEMGHKPTL----ITLNTLVNGLCLNGKVSDAVVLIDRMVETGF 224
Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
PN +T+ ++N +G AM L +M + + ++ +I++ + D AF
Sbjct: 225 QPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFN 284
Query: 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514
LF + + + Y+ N D + KR P
Sbjct: 285 LFNEMEIKGFKADIIT-YNTLIGGFCNAGRWDDGA----------KLLRDMIKR-KISPN 332
Query: 515 TTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
T+++L+ + + L+ EM G++PN I++ LID +E A+Q
Sbjct: 333 VVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQ 389
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 156/350 (44%), Gaps = 27/350 (7%)
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
F + +G+ A+ +++ K++ PN+ +ID CG G ++ + ++++
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEM 330
Query: 283 RSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
+ V + FNSL+ V + + ++ M + D+ SYN LL A C G
Sbjct: 331 QRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQM 390
Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
LA EI + + K ++ +V +YST++ FA A + AL + +M G+ + ++
Sbjct: 391 DLAFEI---LAQMPVKRIMP-NVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVS 446
Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
+++L++ G E+A+ + EM G + + N LL + ++D ++F T
Sbjct: 447 YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVF---T 503
Query: 461 LSKTQVALGE--DYDGNTDRISNME-HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
K + L Y D S +K+ I + F K +
Sbjct: 504 EMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEI-----------FREF-KSAGLRADVVL 551
Query: 518 YNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
Y+ L+ A C + A L++EM G+SPN +++ +IDA G S ++
Sbjct: 552 YSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMD 601
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 139/306 (45%), Gaps = 29/306 (9%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEV 311
PN+ T+ID G + ++ ++ ++R + L+ +N+L+++ + L++
Sbjct: 407 PNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDI 466
Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
+ M +G+ D+ +YN LL G ++++ E+K + VL ++ TYST++
Sbjct: 467 LREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKR---EHVLP-NLLTYSTLID 522
Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
++ ++ A+++ + SAG+ + + +S+LI+A GLV A+ L +EM + G P
Sbjct: 523 GYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISP 582
Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG--EDYDGN---------TDRIS 480
N N ++ A + DR+ +L + AL + +GN T +
Sbjct: 583 NVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESN 642
Query: 481 NMEHKD----KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKA 534
N KD Q ++ H + KP T++ ++ AC C +
Sbjct: 643 NRTTKDCEEGMQELSCILEVFRKMH------QLEIKPNVVTFSAILNACSRCNSFEDASM 696
Query: 535 LMNEMR 540
L+ E+R
Sbjct: 697 LLEELR 702
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 507 KRFSFKPTTTTYNILMKACCT---DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563
K + +P TYN ++ AC ++ +V +EM+ G+ P+ I++ L+ C G
Sbjct: 295 KEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGL 354
Query: 564 VEGA 567
E A
Sbjct: 355 WEAA 358
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 153/333 (45%), Gaps = 24/333 (7%)
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
FC +R++ + + + A+ A++ +K+ PN+ ++ + K++ ++E++R
Sbjct: 171 FCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMR 230
Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
+ T + ++ L+ +L EV++ M G D+ +Y+I++ C AG
Sbjct: 231 DR-FTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRV- 288
Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
E G V+ ++ + K F YS +V + + A+ +M +G+ + +
Sbjct: 289 --DEALGIVRSMDP-SICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVF 345
Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
+SLI A A ++ + +EM G PNS+ CNI+L+ +E + D AF +FR
Sbjct: 346 NSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFR---- 401
Query: 462 SKTQVALGEDYDGNTDRISNM-EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
K D D T I E K+ ++ + + K+ F P+ T+++
Sbjct: 402 -KMIKVCEPDADTYTMVIKMFCEKKEMET--------ADKVWKYMRKKGVF-PSMHTFSV 451
Query: 521 LMKACCTDYYRVKA--LMNEMRTVGLSPNHISW 551
L+ C + KA L+ EM +G+ P+ +++
Sbjct: 452 LINGLCEERTTQKACVLLEEMIEMGIRPSGVTF 484
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
L+V T+ +++ +A A+ A+ M + PN + ++ L++A + V +A +
Sbjct: 166 LNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEV 225
Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
FE M + P+S+ +ILL+ + +A +FR
Sbjct: 226 FENM-RDRFTPDSKTYSILLEGWGKEPNLPKAREVFR 261
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 150/329 (45%), Gaps = 32/329 (9%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTL 309
PN++ +I+ G K+R + ED++ + N+ +N+L++ + + +
Sbjct: 221 PNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKA 280
Query: 310 E-VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
+ V K M + V ++ ++NIL+ N + +++ E+ + +K +V +Y++
Sbjct: 281 DAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQD----VKPNVISYNS 336
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
++ + A+ +++ M+SAGV PN IT+++LIN ++++A+ +F + G
Sbjct: 337 LINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQG 396
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD---GNTDRISNMEHK 485
P ++ N+L+ A + + D F L +G Y+ R N+E
Sbjct: 397 AVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGT-YNCLIAGLCRNGNIEAA 455
Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFK-PTTTTYNILMKACCTDYYRVKA--LMNEMRTV 542
K FD+ S P T++ILM+ C KA L+ EM +
Sbjct: 456 KKL----------------FDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKM 499
Query: 543 GLSPNHISWTILIDACGGSGNVEGALQCR 571
GL P H+++ I++ GN++ A R
Sbjct: 500 GLKPRHLTYNIVMKGYCKEGNLKAATNMR 528
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 135/331 (40%), Gaps = 39/331 (11%)
Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
SPN+ +ID + S +++++ Q+V N+ +NSL+N N + +
Sbjct: 293 SPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAIS 352
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
+ M GV ++ +YN L+ C A +++G VK A ++ Y+ ++
Sbjct: 353 MRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRM----YNMLI 408
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
+ +KE+M G+ P+ T++ LI G +E A LF+++ G
Sbjct: 409 DAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL- 467
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWT--------LSKTQVALGEDYDGNTDRISNM 482
P+ +IL++ + +A L + + L+ V G +GN +NM
Sbjct: 468 PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNM 527
Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMR 540
+ +K + +YN+L++ A L+NEM
Sbjct: 528 R-------------------TQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEML 568
Query: 541 TVGLSPNHISWTILIDACGGSG---NVEGAL 568
GL PN I++ I+ + G ++EG L
Sbjct: 569 EKGLVPNRITYEIVKEEMVDQGFVPDIEGHL 599
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 508 RFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA---CGGSG 562
R +P T+N+++ A C KA +M +M+ G SPN +S+ LID GG+G
Sbjct: 216 RRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNG 275
Query: 563 NVEGA 567
+ A
Sbjct: 276 KMYKA 280
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 97/468 (20%), Positives = 196/468 (41%), Gaps = 60/468 (12%)
Query: 132 VVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL 191
+V ++K L++ G +F L N LD +E+FV ++ ++ + K L
Sbjct: 139 LVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLL 198
Query: 192 DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL 251
D+ + ++ + RA + + + + A+ ++ K+
Sbjct: 199 DK---------------IPLQEYLLDVRA---YTTILHAYSRTGKYEKAIDLFERMKEMG 240
Query: 252 SSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFT 308
SP + I+DV G G + K + +++RS+ + + + +++++ A + L+
Sbjct: 241 PSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREA 300
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
E + ++ G +YN LL+ AG A + E++ D TY+
Sbjct: 301 KEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPA----DSVTYNE 356
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
+V + A + + A V E M GV PN IT++++I+A AG ++A+ LF M +AG
Sbjct: 357 LVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAG 416
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF------------RSWTLSKTQVALGEDYDGNT 476
C PN+ N +L + + + ++ +W T +AL +
Sbjct: 417 CVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWN---TMLALCG--NKGM 471
Query: 477 DRISNMEHKDKQSITNTPNF-VPNSHYSSFDK---------------RFSFKPTTTTYNI 520
D+ N ++ +S P+ N+ S++ + R F TTYN
Sbjct: 472 DKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNA 531
Query: 521 LMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
L+ A D+ + ++++M++ G P S+++++ GN G
Sbjct: 532 LLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLG 579
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 11/199 (5%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
+L NF K R L + RA+ KKH P+M I +++ + Y ++ I E
Sbjct: 602 LLLANF-----KCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILES 656
Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+R ++ ++ +NSLM+ V + E+ K ++K + D+ SYN ++K C G
Sbjct: 657 IREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRG- 715
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
L QE + + +G+ + +FTY+T V + + V E M PN +
Sbjct: 716 --LMQEAVRMLSEMTERGI-RPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNEL 772
Query: 400 TWSSLINACANAGLVEQAM 418
T+ +++ AG +AM
Sbjct: 773 TFKMVVDGYCRAGKYSEAM 791
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 93/201 (46%), Gaps = 6/201 (2%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE--V 311
P+ + RT++ C S + + ++ +FNS++++ + + +
Sbjct: 594 PSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGI 653
Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
+++++ G+ D+ +YN L+ G A+EI +K LE K LK D+ +Y+T++K
Sbjct: 654 LESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEI---LKTLE-KSQLKPDLVSYNTVIK 709
Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
F Q A+++ +M G+ P T+++ ++ G+ + + E M + C P
Sbjct: 710 GFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRP 769
Query: 432 NSQCCNILLQACVEACQFDRA 452
N +++ A ++ A
Sbjct: 770 NELTFKMVVDGYCRAGKYSEA 790
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/316 (17%), Positives = 129/316 (40%), Gaps = 38/316 (12%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEV 311
PN T+ID G G ++ ++ ++ N +N+++++ + +++
Sbjct: 384 PNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKM 443
Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
+M+ G + A++N +L C G ++ E+K + D T++T++
Sbjct: 444 LCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCG----FEPDRDTFNTLIS 499
Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
+ A K+ +M AG T+++L+NA A G ++ +M G +P
Sbjct: 500 AYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKP 559
Query: 432 NSQCCNILLQACVEACQF---------DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
+++LQ + + + ++F SW L +T + ++N
Sbjct: 560 TETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLL------------LANF 607
Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMR 540
+ + + + K+ +KP +N ++ + Y + + ++ +R
Sbjct: 608 KCR---------ALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIR 658
Query: 541 TVGLSPNHISWTILID 556
GLSP+ +++ L+D
Sbjct: 659 EDGLSPDLVTYNSLMD 674
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 7/194 (3%)
Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKL 318
TI+DV K+ ++ LR + +++ +N ++N LEV K M +
Sbjct: 166 TILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWCLIKRTPKALEVLKEMVER 224
Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
G+ ++ +YN +LK AG A E + E+K + + +DV TY+T+V F A
Sbjct: 225 GINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCE----IDVVTYTTVVHGFGVAGE 280
Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
+ A V ++M+ GV P+ T++++I VE A+ +FEEM++ G EPN N+
Sbjct: 281 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 340
Query: 439 LLQACVEACQFDRA 452
L++ A +F R
Sbjct: 341 LIRGLFHAGEFSRG 354
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 23/264 (8%)
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
++++ NM + G D+AS+N +L C + A E++ + +G +D TY+
Sbjct: 146 VKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL-----RGRFSVDTVTYNV 200
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
I+ + K AL+V ++M+ G+ PN T+++++ AG + A F EM +
Sbjct: 201 ILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRD 260
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
CE + ++ A + RA +F ++ Y+ I + KD
Sbjct: 261 CEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA-TYNA---MIQVLCKKD-- 314
Query: 489 SITNTPNFVPNSHYSSFDK--RFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGL 544
N N V F++ R ++P TTYN+L++ ++ R + LM M G
Sbjct: 315 ---NVENAV-----VMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGC 366
Query: 545 SPNHISWTILIDACGGSGNVEGAL 568
PN ++ ++I VE AL
Sbjct: 367 EPNFQTYNMMIRYYSECSEVEKAL 390
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 92/192 (47%), Gaps = 6/192 (3%)
Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLE 310
+PN+ T++ G + + +++ ++ +++ + ++++ A ++K
Sbjct: 227 NPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARN 286
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
V+ M + GV+ +A+YN +++ C N A ++ E+ + + +V TY+ ++
Sbjct: 287 VFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEM----VRRGYEPNVTTYNVLI 342
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
+ A + ++ + M + G PN T++ +I + VE+A+ LFE+M C
Sbjct: 343 RGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCL 402
Query: 431 PNSQCCNILLQA 442
PN NIL+
Sbjct: 403 PNLDTYNILISG 414
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 94/189 (49%), Gaps = 9/189 (4%)
Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
T++ G+ G+ ++R +++++ + V ++ +N+++ V +++ + +++ M +
Sbjct: 270 TVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR 329
Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
G ++ +YN+L++ AG +E+ ++ +E +G + + TY+ +++ +++
Sbjct: 330 GYEPNVTTYNVLIRGLFHAGEFSRGEEL---MQRMENEGC-EPNFQTYNMMIRYYSECSE 385
Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ---AMHLFEEMLQAGCEPNSQC 435
+ AL + E M S PN T++ LI+ E A L EM++ G P
Sbjct: 386 VEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFT 445
Query: 436 CNILLQACV 444
N +L +
Sbjct: 446 FNRVLNGLL 454
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 50/183 (27%)
Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
M S + P+ T++ + A+AG ++A+ LF M + GC + N +L ++ +
Sbjct: 117 MRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKR 176
Query: 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508
++A+ LFR+ R
Sbjct: 177 VEKAYELFRAL------------------------------------------------R 188
Query: 509 FSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
F T TYN+++ C KAL + EM G++PN ++ ++ +G +
Sbjct: 189 GRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRH 248
Query: 567 ALQ 569
A +
Sbjct: 249 AWE 251
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 149/344 (43%), Gaps = 30/344 (8%)
Query: 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
DIL ++RE G +D +L + + +P++Y C I+ G+ + + +
Sbjct: 127 DILIRVYLRE-GMIQD---SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLK 182
Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAG 338
++ + + ++ FN L+NV + F Y + M+K G + +YN +L C G
Sbjct: 183 EMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKG 242
Query: 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
A E+ + H+++KGV DV TY+ ++ + + DM + PN
Sbjct: 243 RFKAAIEL---LDHMKSKGV-DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNE 298
Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF-- 456
+T+++LIN +N G V A L EML G PN N L+ + F A ++F
Sbjct: 299 VTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYM 358
Query: 457 -RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515
+ L+ ++V+ G DG + F + KR
Sbjct: 359 MEAKGLTPSEVSYGVLLDG---------------LCKNAEFDLARGFYMRMKRNGVCVGR 403
Query: 516 TTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
TY ++ C + + +A L+NEM G+ P+ ++++ LI+
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALING 447
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 145/321 (45%), Gaps = 22/321 (6%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEV 311
P++ +I+V G + KS + + + I +N++++ +F +E+
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250
Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
+M+ GV AD+ +YN+L+ C + + +++ K ++ + TY+T++
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMR----KRMIHPNEVTYNTLIN 306
Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
F++ +A ++ +MLS G++PN +T+++LI+ + G ++A+ +F M G P
Sbjct: 307 GFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTP 366
Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE-DYDGNTDRISNMEHKDKQSI 490
+ +LL + +FD A + + + V +G Y G D + D+ +
Sbjct: 367 SEVSYGVLLDGLCKNAEFDLARGFY--MRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVV 424
Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNH 548
+ D P TY+ L+ C + K ++ + VGLSPN
Sbjct: 425 -----LLNEMSKDGID------PDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNG 473
Query: 549 ISWTILIDACGGSGNVEGALQ 569
I ++ LI C G ++ A++
Sbjct: 474 IIYSTLIYNCCRMGCLKEAIR 494
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 108/251 (43%), Gaps = 10/251 (3%)
Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
I+P C + +G + + A +D K P + +++ G+C G
Sbjct: 539 ILPNTVSFDC-LINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLK--GLCKGGHLR 595
Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
++ + L + ++ ++N+L+ + +L + ++ M + ++ D +Y L+
Sbjct: 596 EAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLI 655
Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
C G TV+A K EA+G + + Y+ V A W+ + +E M +
Sbjct: 656 SGLCRKGKTVIAILF---AKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDN 712
Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
G TP+ +T +++I+ + G +E+ L EM PN NILL +
Sbjct: 713 LGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVST 772
Query: 452 AFRLFRSWTLS 462
+F L+RS L+
Sbjct: 773 SFLLYRSIILN 783
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/354 (20%), Positives = 139/354 (39%), Gaps = 43/354 (12%)
Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305
+K + PN T+I+ G + + + ++ S ++ N FN+L++ ++ +
Sbjct: 290 RKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 349
Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
K L+++ M+ G+ SY +LL C LA+ Y +K GV + T
Sbjct: 350 KEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR---NGVC-VGRIT 405
Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
Y+ ++ + A+ + +M G+ P+ +T+S+LIN G + A + +
Sbjct: 406 YTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIY 465
Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI------ 479
+ G PN + L+ C A R++ + L G D T +
Sbjct: 466 RVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILE------GHTRDHFTFNVLVTSLC 519
Query: 480 ---SNMEHKDKQSITNTPNFVPNS------------------HYSSFDK--RFSFKPTTT 516
E ++ + +PN+ +S FD+ + PT
Sbjct: 520 KAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFF 579
Query: 517 TYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
TY L+K C + +A + + V + + + + L+ A SGN+ A+
Sbjct: 580 TYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAV 633
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 103/269 (38%), Gaps = 57/269 (21%)
Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
L+ L++ K GV D ++N+L+ CC G A ++ VK + + G+ LD
Sbjct: 805 LEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDL---VKVMTSLGI-SLDKD 860
Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
T +V V +Q + V +M G++P + + LIN G ++ A + EEM
Sbjct: 861 TCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEM 920
Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484
+ P + + +++A + + D A L R
Sbjct: 921 IAHKICPPNVAESAMVRALAKCGKADEATLLLR--------------------------- 953
Query: 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV-- 542
F + PT ++ LM CC + ++AL E+R V
Sbjct: 954 --------------------FMLKMKLVPTIASFTTLMHLCCKNGNVIEAL--ELRVVMS 991
Query: 543 --GLSPNHISWTILIDACGGSGNVEGALQ 569
GL + +S+ +LI G++ A +
Sbjct: 992 NCGLKLDLVSYNVLITGLCAKGDMALAFE 1020
Score = 40.4 bits (93), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
M K+ ++ +AS+ L+ CC GN + A E+ + + + LKLD+ +Y+ ++
Sbjct: 955 MLKMKLVPTIASFTTLMHLCCKNGNVIEALEL----RVVMSNCGLKLDLVSYNVLITGLC 1010
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
+A ++ E+M G N T+ +LI
Sbjct: 1011 AKGDMALAFELYEEMKGDGFLANATTYKALIRG 1043
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMA 325
CG ++ + + + I F +LM++ N + ++ LE+ M G+ D+
Sbjct: 942 CGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIE-ALELRVVMSNCGLKLDLV 1000
Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK-VFADAKWWQMALK 384
SYN+L+ C G+ LA E+Y E+K G L + TY +++ + A + A
Sbjct: 1001 SYNVLITGLCAKGDMALAFELYEEMK---GDGFLA-NATTYKALIRGLLARETAFSGADI 1056
Query: 385 VKEDMLSAG 393
+ +D+L+ G
Sbjct: 1057 ILKDLLARG 1065
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 106/238 (44%), Gaps = 6/238 (2%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
+ FC + F K+ ++ A + ++ P++ T+ID G ++
Sbjct: 287 VTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQ 346
Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+ V L++ VF+S ++V + DL VYK M G+ ++ +Y IL+K C G
Sbjct: 347 ALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGR 406
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
A +YG++ K ++ + TYS+++ F + + EDM+ G P+ +
Sbjct: 407 IYEAFGMYGQI----LKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVV 462
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
+ L++ + GL+ AM +ML N N L+ +FD A ++FR
Sbjct: 463 IYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFR 520
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 127/296 (42%), Gaps = 33/296 (11%)
Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
N+ F +L+N ++ +++K M++ G+ D+ +Y+ L+ AG + +++
Sbjct: 285 NVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLF 344
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
+ H KGV KLDV +S+ + V+ + A V + ML G++PN +T++ LI
Sbjct: 345 SQALH---KGV-KLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKG 400
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKT 464
G + +A ++ ++L+ G EP+ + L+ + F L+
Sbjct: 401 LCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPD 460
Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPN------FVPNS------HYSSFDKR---- 508
V G DG + + M H + S+ V NS + FD+
Sbjct: 461 VVIYGVLVDGLSKQ-GLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVF 519
Query: 509 -----FSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA 557
+ KP T+ +M+ + +A L M +GL P+ +++ LIDA
Sbjct: 520 RLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDA 575
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/354 (20%), Positives = 156/354 (44%), Gaps = 24/354 (6%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
++F + + + K DL +A Y SPN+ + TI+ + G+C G ++ +Y
Sbjct: 357 VVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNV-VTYTIL-IKGLCQDGRIYEAFGMY 414
Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
+ + + +I ++SL++ +L+ +Y++M K+G D+ Y +L+ L+
Sbjct: 415 GQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDG--LS 472
Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
++ + VK L ++L+V +++++ + + ALKV M G+ P+
Sbjct: 473 KQGLMLHAMRFSVKMLGQS--IRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPD 530
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
T+++++ G +E+A+ LF M + G EP++ L+ A + + +LF
Sbjct: 531 VATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFD 590
Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
+K + + + ++ K I + F N + P T
Sbjct: 591 LMQRNKISADIAV-----CNVVIHLLFK-CHRIEDASKFFNNLIEGKME------PDIVT 638
Query: 518 YNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
YN ++ C+ + + ++ PN ++ TILI + +++GA++
Sbjct: 639 YNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIR 692
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/356 (19%), Positives = 144/356 (40%), Gaps = 32/356 (8%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
+ + + + F K +L S Y+ K P++ I ++D G + +
Sbjct: 427 VTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVK 486
Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+ Q++ LN+ VFNSL++ +F L+V++ M G+ D+A++ +++ + G
Sbjct: 487 MLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGR 546
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
A ++ + + L+ D Y T++ F + L++ + M ++ +
Sbjct: 547 LEEALFLFFRMFKMG----LEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIA 602
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
+ +I+ +E A F +++ EP+ N ++ + D A R+F
Sbjct: 603 VCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELL 662
Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF------KP 513
++ + NT ++ + H N+ + FS KP
Sbjct: 663 KVTP--------FGPNTVTLTILIHV----------LCKNNDMDGAIRMFSIMAEKGSKP 704
Query: 514 TTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
TY LM + D L EM+ G+SP+ +S++I+ID G V+ A
Sbjct: 705 NAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEA 760
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/221 (16%), Positives = 98/221 (44%), Gaps = 6/221 (2%)
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
+C + F K L+ +D +++ S ++ +C +I + C + + +L
Sbjct: 569 YCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLI 628
Query: 284 SQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
+ +I +N+++ + L +++ ++ + + IL+ C +
Sbjct: 629 EGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMD 688
Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
A ++ + A+ K + TY ++ F+ + + + K+ E+M G++P+ +++
Sbjct: 689 GAIRMFS----IMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSY 744
Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
S +I+ G V++A ++F + + A P+ IL++
Sbjct: 745 SIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRG 785
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 111/268 (41%), Gaps = 26/268 (9%)
Query: 195 FRIVQLCVNKPDV---NLAIRYACIVPRADILFCNFVREF--GKKRDLVSALRAYDASKK 249
FR++ + KPDV +R + + R + F R F G + D ++ DA K
Sbjct: 519 FRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCK 578
Query: 250 HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL 309
H+ I + D+ M+ I D+ NV +++ H ++
Sbjct: 579 HMKPT---IGLQLFDL-------MQRNKISADIAVCNVVIHLLF-------KCHRIEDAS 621
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
+ + N+ + + D+ +YN ++ C A+ I+ E+ + G + T + +
Sbjct: 622 KFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIF-ELLKVTPFGP---NTVTLTIL 677
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+ V A+++ M G PN +T+ L++ + + +E + LFEEM + G
Sbjct: 678 IHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGI 737
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFR 457
P+ +I++ + + D A +F
Sbjct: 738 SPSIVSYSIIIDGLCKRGRVDEATNIFH 765
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 151/341 (44%), Gaps = 28/341 (8%)
Query: 231 FGKKRDLVSALRAYD---ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
F KK DL ALRA+D K + S + + II + G G + ++ L+
Sbjct: 147 FHKKFDL--ALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGF 204
Query: 288 TLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
+L++Y + SL++ A+ ++ + V+K M++ G + +YN++L G +
Sbjct: 205 SLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTP--WNK 262
Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
I V+ +++ G+ D +TY+T++ Q A +V E+M +AG + + +T+++L+
Sbjct: 263 ITSLVEKMKSDGIAP-DAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALL 321
Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
+ + ++AM + EM+ G P+ N L+ A D A L T+
Sbjct: 322 DVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTK 381
Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILMK 523
D T +S E K S S F+ + KP T+N +K
Sbjct: 382 ----PDVFTYTTLLSGFERAGKVE----------SAMSIFEEMRNAGCKPNICTFNAFIK 427
Query: 524 ACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562
+ + + +E+ GLSP+ ++W L+ G +G
Sbjct: 428 MYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNG 468
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 110/223 (49%), Gaps = 6/223 (2%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
+ + + + + + L A+ + + + P+++ T++ G + +I+E+
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEE 409
Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+R+ NI FN+ + + + KFT ++++ + G+ D+ ++N LL + G
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLL---AVFGQ 466
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
+ E+ G K ++ G + + T++T++ ++ ++ A+ V ML AGVTP+
Sbjct: 467 NGMDSEVSGVFKEMKRAGFVP-ERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLS 525
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
T+++++ A A G+ EQ+ + EM C+PN LL A
Sbjct: 526 TYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHA 568
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 150/346 (43%), Gaps = 36/346 (10%)
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
+ + F + + SA+ ++ + PN+ I + G G + + I++++
Sbjct: 387 YTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEIN 446
Query: 284 SQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
++ +I +N+L+ V N D + + V+K M++ G + + ++N L+ A G+
Sbjct: 447 VCGLSPDIVTWNTLLAVFGQNGMDSEVS-GVFKEMKRAGFVPERETFNTLISAYSRCGSF 505
Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
A +Y + + GV D+ TY+T++ A W+ + KV +M PN +T
Sbjct: 506 EQAMTVY---RRMLDAGVTP-DLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELT 561
Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC-------QFDRAF 453
+ SL++A AN + L EE+ EP + +LL+ V C + +RAF
Sbjct: 562 YCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRA----VLLKTLVLVCSKCDLLPEAERAF 617
Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513
+ S L S + ++ + N V + + K F P
Sbjct: 618 SELKERGFSPDITTLN----------SMVSIYGRRQMVAKANGVLD-----YMKERGFTP 662
Query: 514 TTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557
+ TYN L M + D+ + + ++ E+ G+ P+ IS+ +I A
Sbjct: 663 SMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYA 708
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 105/236 (44%), Gaps = 7/236 (2%)
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDL 282
+ + + F A+ + ++ P + I++V G G + K ++ E +
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM 270
Query: 283 RSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
+S + + Y +N+L+ + +V++ M+ G D +YN LL + G +
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLD---VYGKS 327
Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
+E + + G + TY++++ +A A+++K M G P+ T
Sbjct: 328 HRPKEAMKVLNEMVLNG-FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFT 386
Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
+++L++ AG VE AM +FEEM AGC+PN N ++ +F ++F
Sbjct: 387 YTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 110/242 (45%), Gaps = 41/242 (16%)
Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
+P+ Y T+I C + ++ ++E++++ + + +N+L++V +H K ++
Sbjct: 276 APDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMK 335
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
V M G + +YN L+ A G +L + + E+K+ A+ K DVFTY+T++
Sbjct: 336 VLNEMVLNGFSPSIVTYNSLISAYARDG--MLDEAM--ELKNQMAEKGTKPDVFTYTTLL 391
Query: 371 KVFADAKWWQMALKVKEDMLSAG-----------------------------------VT 395
F A + A+ + E+M +AG ++
Sbjct: 392 SGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLS 451
Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
P+ +TW++L+ G+ + +F+EM +AG P + N L+ A F++A +
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 456 FR 457
+R
Sbjct: 512 YR 513
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 103/205 (50%), Gaps = 7/205 (3%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE--V 311
P + +T++ VC C ++ + +L+ + + +I NS++++ V
Sbjct: 592 PRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGV 651
Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
M++ G MA+YN L+ + + ++EI ++ + AKG+ K D+ +Y+T++
Sbjct: 652 LDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEI---LREILAKGI-KPDIISYNTVIY 707
Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
+ + A ++ +M ++G+ P+ IT+++ I + A + E+A+ + M++ GC P
Sbjct: 708 AYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRP 767
Query: 432 NSQCCNILLQACVEACQFDRAFRLF 456
N N ++ + + D A +LF
Sbjct: 768 NQNTYNSIVDGYCKLNRKDEA-KLF 791
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 23/217 (10%)
Query: 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV-EQA 417
LDV++Y++++ FA++ ++ A+ V + M G P IT++ ++N G +
Sbjct: 204 FSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKI 263
Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
L E+M G P++ N L+ C A ++F A G YD T
Sbjct: 264 TSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMK------AAGFSYDKVTY 317
Query: 478 R----ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK 533
+ H+ K+++ V N F P+ TYN L+ A D +
Sbjct: 318 NALLDVYGKSHRPKEAMKVLNEMVLN----------GFSPSIVTYNSLISAYARDGMLDE 367
Query: 534 A--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
A L N+M G P+ ++T L+ +G VE A+
Sbjct: 368 AMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 101/213 (47%), Gaps = 7/213 (3%)
Query: 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273
I PRA +L V K L A RA+ K+ SP++ +++ + G
Sbjct: 588 GVIEPRA-VLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVA 646
Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILL 331
K+ + + ++ + T ++ +NSLM +++ F + E+ + + G+ D+ SYN ++
Sbjct: 647 KANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVI 706
Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
A C A I+ E+++ G++ DV TY+T + +A ++ A+ V M+
Sbjct: 707 YAYCRNTRMRDASRIFSEMRN---SGIVP-DVITYNTFIGSYAADSMFEEAIGVVRYMIK 762
Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
G PN T++S+++ ++A E++
Sbjct: 763 HGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDL 795
>sp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520,
mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2
SV=1
Length = 766
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 117/258 (45%), Gaps = 42/258 (16%)
Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
+YN L+ C AG A+E+ +K E +K +V T +TIV MA+
Sbjct: 408 TYNCLIDGYCRAGKLETAKEVVSRMKEDE----IKPNVVTVNTIVGGMCRHHGLNMAVVF 463
Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
DM GV N +T+ +LI+AC + VE+AM+ +E+ML+AGC P+++ L+ +
Sbjct: 464 FMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQ 523
Query: 446 ACQFDRAFRLFR-------SWTLSKTQVALGEDYD-GNTDRI----SNMEHKDKQSITNT 493
+ A R+ S L + +G D NT+++ ++ME + K
Sbjct: 524 VRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGK------ 577
Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISW 551
KP + TYN L+ D+ V+ +M +MR GL P ++
Sbjct: 578 ------------------KPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTY 619
Query: 552 TILIDACGGSGNVEGALQ 569
+IDA G ++ AL+
Sbjct: 620 GAVIDAYCSVGELDEALK 637
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 75/358 (20%), Positives = 132/358 (36%), Gaps = 74/358 (20%)
Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
+PN +ID G ++ + ++ + N+ N+++ H L +
Sbjct: 403 APNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVV 462
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA--------------- 355
+ +M+K GV ++ +Y L+ ACC N + + +Y K LEA
Sbjct: 463 FFMDMEKEGVKGNVVTYMTLIHACCSVSN--VEKAMYWYEKMLEAGCSPDAKIYYALISG 520
Query: 356 ------------------KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
+G LD+ Y+ ++ +F D + ++ DM G P+
Sbjct: 521 LCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPD 580
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
+IT+++LI+ E + E+M + G +P ++ A + D A +LF+
Sbjct: 581 SITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFK 640
Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN--SHYSSFDKRFSFK--- 512
L H T N + N S +F + S K
Sbjct: 641 DMGL----------------------HSKVNPNTVIYNILINAFSKLGNFGQALSLKEEM 678
Query: 513 ------PTTTTYNILMKACCTDYYRVKAL---MNEMRTVGLSPNHISWTILIDACGGS 561
P TYN L K C + + + L M+EM PN I+ IL++ GS
Sbjct: 679 KMKMVRPNVETYNALFK-CLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGS 735
>sp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g28460
OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1
Length = 766
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 115/258 (44%), Gaps = 42/258 (16%)
Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
+YN L+ C AG A+E+ +K E +K +V T +TIV MA+
Sbjct: 408 TYNCLIDGYCRAGKLETAKEVVSRMKEDE----IKPNVVTVNTIVGGMCRHHGLNMAVVF 463
Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
DM GV N +T+ +LI+AC + VE+AM+ +E+ML+AGC P+++ L+ +
Sbjct: 464 FMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQ 523
Query: 446 ACQFDRAFRLFR-------SWTLSKTQVALGEDYDGNT-----DRISNMEHKDKQSITNT 493
+ A R+ S L + +G D N + +++ME + K
Sbjct: 524 VRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGK------ 577
Query: 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISW 551
KP + TYN L+ D+ V+ +M +MR GL P ++
Sbjct: 578 ------------------KPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTY 619
Query: 552 TILIDACGGSGNVEGALQ 569
+IDA G ++ AL+
Sbjct: 620 GAVIDAYCSVGELDEALK 637
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 131/357 (36%), Gaps = 74/357 (20%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
PN +ID G ++ + ++ + N+ N+++ H L +
Sbjct: 404 PNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVF 463
Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA---------------- 355
+ +M+K GV ++ +Y L+ ACC N + + +Y K LEA
Sbjct: 464 FMDMEKEGVKGNVVTYMTLIHACCSVSN--VEKAMYWYEKMLEAGCSPDAKIYYALISGL 521
Query: 356 -----------------KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
+G LD+ Y+ ++ +F D + ++ DM G P++
Sbjct: 522 CQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDS 581
Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
IT+++LI+ E + E+M + G +P ++ A + D A +LF+
Sbjct: 582 ITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD 641
Query: 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN--SHYSSFDKRFSFK---- 512
L H T N + N S +F + S K
Sbjct: 642 MGL----------------------HSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMK 679
Query: 513 -----PTTTTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDACGGS 561
P TYN L K C + + + LM+EM PN I+ IL++ GS
Sbjct: 680 MKMVRPNVETYNALFK-CLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGS 735
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 9/208 (4%)
Query: 253 SPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
SP+ I +I +C + D+ R + E L+ +L++ +N L+ + + ++ +
Sbjct: 508 SPDAKIYYALISGLCQVRRDHDAIRVV-EKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVY 566
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
E+ +M+K G D +YN L+ G + + ++ + G L V TY +
Sbjct: 567 EMLTDMEKEGKKPDSITYNTLI---SFFGKHKDFESVERMMEQMREDG-LDPTVTTYGAV 622
Query: 370 VKVFADAKWWQMALKVKEDM-LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
+ + ALK+ +DM L + V PNT+ ++ LINA + G QA+ L EEM
Sbjct: 623 IDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKM 682
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLF 456
PN + N L + E Q + +L
Sbjct: 683 VRPNVETYNALFKCLNEKTQGETLLKLM 710
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 40/397 (10%)
Query: 194 EFRIVQLCVNKPDVNLAIRYACIVPRAD------------------ILFCNFVREFGKKR 235
EF V +C N N+ I + C + R I + V + +
Sbjct: 236 EFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFG 295
Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
+L + + K+ PN YI +II + C IC A E +R Q + + V+
Sbjct: 296 ELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR-QGILPDTVVY 354
Query: 295 NSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
+L++ D++ + + M + D+ +Y ++ C G+ V A +++ E
Sbjct: 355 TTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE--- 411
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+ KG L+ D T++ ++ + A + A +V M+ AG +PN +T+++LI+ G
Sbjct: 412 MFCKG-LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEG 470
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
++ A L EM + G +PN N ++ ++ + A +L V E
Sbjct: 471 DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL----------VGEFEAA 520
Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YY 530
N D ++ D + + K +PT T+N+LM C
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK--GLQPTIVTFNVLMNGFCLHGMLE 578
Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
+ L+N M G++PN ++ L+ N++ A
Sbjct: 579 DGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 615
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/366 (21%), Positives = 160/366 (43%), Gaps = 26/366 (7%)
Query: 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN 255
RI +L + + IR I+P +++ + F K+ D+ +A + + +P+
Sbjct: 328 RICKLAEAEEAFSEMIRQG-ILPDT-VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPD 385
Query: 256 MYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
+ II G C GD +++ ++ ++ + + + F L+N A +K V
Sbjct: 386 VLTYTAIIS--GFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 443
Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
+ +M + G ++ +Y L+ C G+ A E+ E+ + L+ ++FTY++IV
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG----LQPNIFTYNSIVN 499
Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
+ + A+K+ + +AG+ +T+T+++L++A +G +++A + +EML G +P
Sbjct: 500 GLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQP 559
Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
N+L+ + +L +W L+K G + KQ
Sbjct: 560 TIVTFNVLMNGFCLHGMLEDGEKLL-NWMLAK----------GIAPNATTFNSLVKQYCI 608
Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHI 549
+ Y R P TY L+K C +A L EM+ G S +
Sbjct: 609 RNNLKAATAIYKDMCSR-GVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVS 667
Query: 550 SWTILI 555
++++LI
Sbjct: 668 TYSVLI 673
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 141/326 (43%), Gaps = 36/326 (11%)
Query: 274 KSRAIYEDLRSQNVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
++R ++E + + + L++ V+ + ++ + + + V++ ++GV ++ASYNI+
Sbjct: 193 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 252
Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
+ C G +E + + +E KG DV +YST+V + K+ E M
Sbjct: 253 IHFVCQLGRI---KEAHHLLLLMELKGYTP-DVISYSTVVNGYCRFGELDKVWKLIEVMK 308
Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450
G+ PN+ + S+I + +A F EM++ G P++ L+ +
Sbjct: 309 RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIR 368
Query: 451 RAFRLF-----RSWT---LSKTQVALGEDYDGNTDRISNMEHK------DKQSITNTPNF 496
A + F R T L+ T + G G+ + H+ + S+T T
Sbjct: 369 AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE-- 426
Query: 497 VPNSHYSSFDKRFSFK-----------PTTTTYNILMKACCT--DYYRVKALMNEMRTVG 543
+ N + + + +F+ P TY L+ C D L++EM +G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486
Query: 544 LSPNHISWTILIDACGGSGNVEGALQ 569
L PN ++ +++ SGN+E A++
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVK 512
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 120/271 (44%), Gaps = 39/271 (14%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
+ F + + K + A R ++ + SPN+ T+ID G+C GD + +
Sbjct: 422 VTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLID--GLCKEGDLDSANELL 479
Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
++ + NI+ +NS++N + +++ +++ + G+ AD +Y L+ A C +
Sbjct: 480 HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 539
Query: 338 GNTVLAQEIYGEV--KHLE------------------------------AKGVLKLDVFT 365
G AQEI E+ K L+ AKG+ + T
Sbjct: 540 GEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP-NATT 598
Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
++++VK + + A + +DM S GV P+ T+ +L+ A +++A LF+EM
Sbjct: 599 FNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMK 658
Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
G + ++L++ ++ +F A +F
Sbjct: 659 GKGFSVSVSTYSVLIKGFLKRKKFLEAREVF 689
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 6/176 (3%)
Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEVYKN-MQKL 318
T++D G+ K++ I +++ + + I FN LMN H + E N M
Sbjct: 531 TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK 590
Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
G+ + ++N L+K C+ N A IY K + ++GV D TY +VK A+
Sbjct: 591 GIAPNATTFNSLVKQYCIRNNLKAATAIY---KDMCSRGV-GPDGKTYENLVKGHCKARN 646
Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
+ A + ++M G + + T+S LI +A +F++M + G + +
Sbjct: 647 MKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKE 702
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 95/183 (51%), Gaps = 6/183 (3%)
Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310
SPN+ T + + GD K + E L ++ F+ ++N A ++K +
Sbjct: 457 SPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFD 516
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
+K M + G+ + +YNIL+++CC G+T + +++ ++K + L D++ Y+ +
Sbjct: 517 CFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMK----ENGLSPDLYAYNATI 572
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
+ F + + A ++ + ML G+ P+ T+S+LI A + +G +A +F + + GC
Sbjct: 573 QSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCV 632
Query: 431 PNS 433
P+S
Sbjct: 633 PDS 635
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 87/171 (50%), Gaps = 6/171 (3%)
Query: 290 NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
++Y +N++++ A ++ MQ G+ ++ ++N L + G+ ++++
Sbjct: 424 SVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDV---KKVH 480
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
G ++ L G K DV T+S I+ AK + A ++ML G+ PN IT++ LI +
Sbjct: 481 GVLEKLLVHG-FKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRS 539
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
C + G ++++ LF +M + G P+ N +Q+ + + +A L ++
Sbjct: 540 CCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKT 590
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 99/252 (39%), Gaps = 53/252 (21%)
Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372
K M G+++ + SYN ++ C A A E ++ +G+ ++ T++T +
Sbjct: 414 KQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTE---MQDRGI-SPNLVTFNTFLSG 469
Query: 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
++ + V E +L G P+ IT+S +IN A ++ A F+EML+ G EPN
Sbjct: 470 YSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPN 529
Query: 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492
NIL+++C DR+ +LF
Sbjct: 530 EITYNILIRSCCSTGDTDRSVKLFAKM--------------------------------- 556
Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHIS 550
K P YN +++ C + + L+ M +GL P++ +
Sbjct: 557 --------------KENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFT 602
Query: 551 WTILIDACGGSG 562
++ LI A SG
Sbjct: 603 YSTLIKALSESG 614
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 66/150 (44%), Gaps = 4/150 (2%)
Query: 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364
L ++E+ K ++ G +L+ + G +++ ++ L K +L
Sbjct: 126 LLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRL--- 182
Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
Y+ ++ + +A + M S G P+ T++ LI+ G+V++A+ L ++M
Sbjct: 183 -YNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQM 241
Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFR 454
Q G PN IL+ + A + D A +
Sbjct: 242 EQEGNRPNVFTYTILIDGFLIAGRVDEALK 271
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 7/146 (4%)
Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
K+ +V+ + LG+ YN ++ A + + LA Y + + + + G K D FT
Sbjct: 162 KYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLA---YLKFQQMRSDGC-KPDRFT 217
Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
Y+ ++ A+++ + M G PN T++ LI+ AG V++A+ E M
Sbjct: 218 YNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMR 277
Query: 426 QAGCEPNSQCCNILLQA---CVEACQ 448
PN + C+ C+
Sbjct: 278 VRKLNPNEATIRTFVHGIFRCLPPCK 303
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 86/207 (41%), Gaps = 35/207 (16%)
Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
G P++ T+++ ++ + + +F+ + G +P +L+QA + A +F
Sbjct: 350 GYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEG 409
Query: 453 FRLFRSWTLSKTQVALGEDYDGNTD------RISN--MEHKDKQSITNTPNFVP-NSHYS 503
R + + ++ Y+ D RI N M + Q +PN V N+ S
Sbjct: 410 DRYLKQMGVDGLLSSV-YSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLS 468
Query: 504 SFDKR---------------FSFKPTTTTYNILMKACCTDYYRVKALMN------EMRTV 542
+ R FKP T+++++ C R K + + EM
Sbjct: 469 GYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLC----RAKEIKDAFDCFKEMLEW 524
Query: 543 GLSPNHISWTILIDACGGSGNVEGALQ 569
G+ PN I++ ILI +C +G+ + +++
Sbjct: 525 GIEPNEITYNILIRSCCSTGDTDRSVK 551
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
G+ P+T ++++I+A + ++ A F++M GC+P+ NIL+ + D A
Sbjct: 175 GMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEA 234
Query: 453 FRLFR 457
RL +
Sbjct: 235 IRLVK 239
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 512 KPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
KP TYNIL+ C +A L+ +M G PN ++TILID +G V+ AL+
Sbjct: 212 KPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALK 271
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 118/234 (50%), Gaps = 15/234 (6%)
Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
G+ D LR D K+ + PN+ +ID G+ +++R +Y+++ ++V N+
Sbjct: 233 GRWTDAARLLR--DMVKRKID-PNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNV 289
Query: 292 YVFNSLMN-VNAH----DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346
+ +NSL+N H D K+ ++ M G D+ +YN L+ C + ++
Sbjct: 290 FTYNSLINGFCIHGCLGDAKYMFDL---MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 346
Query: 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406
+ E+ + G D FTY+T++ + A +A KV M+ GV+P+ +T++ L++
Sbjct: 347 FCEMTYQGLVG----DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLD 402
Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
N G +E+A+ + E++ ++ + + NI++Q + A+ LFRS T
Sbjct: 403 CLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLT 456
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 133/339 (39%), Gaps = 70/339 (20%)
Query: 294 FNSLMNVNAHDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
F ++ V A KF + +Y M+ LG+ D+ S+ IL+ C LA + G++
Sbjct: 82 FTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMM 141
Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CAN 410
L + + T +++ F +Q A+ + + M G PN + ++++IN C N
Sbjct: 142 KLG----FRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKN 197
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ----- 465
L A+ +F M + G ++ N L+ + ++ A RL R K
Sbjct: 198 RDL-NNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIF 256
Query: 466 -VALGEDY--DGNTDRISNMEHKDKQSITNTPN-FVPNSHYSSF-------DKRFSFK-- 512
AL + + +GN N+ +K+ + PN F NS + F D ++ F
Sbjct: 257 FTALIDTFVKEGNLLEARNL-YKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM 315
Query: 513 ------PTTTTYNIL-------------MKACCTDYYR---------------------- 531
P TYN L MK C Y+
Sbjct: 316 VSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKL 375
Query: 532 --VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
+ + N M G+SP+ +++ IL+D +G +E AL
Sbjct: 376 NVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKAL 414
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 102/214 (47%), Gaps = 6/214 (2%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
I F + F K+ +L+ A Y + PN++ ++I+ I G ++ +++
Sbjct: 255 IFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDL 314
Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+ S+ ++ +N+L+ + ++ ++++ M G++ D +YN L+ C AG
Sbjct: 315 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGK 374
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
+AQ+++ + + D+ TY+ ++ + + AL + ED+ + + + I
Sbjct: 375 LNVAQKVFNRM----VDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDII 430
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
T++ +I +++A LF + + G +P++
Sbjct: 431 TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDA 464
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 6/238 (2%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
I++ N VR + + ++ A + + K PN+Y +ID CG ++ ++ D
Sbjct: 256 IVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFAD 315
Query: 282 LRSQNVTLNIYVFNSLM--NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+ N FN+LM +V A + L+VY M+KLG D +YN L++A C N
Sbjct: 316 MLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDEN 375
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
A ++ + K +++ T++TI + + A ++ M+ A PNT+
Sbjct: 376 LENAVKVLNTM----IKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTV 431
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
T++ L+ + + + + +EM EPN +L+ ++ A++LF+
Sbjct: 432 TYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFK 489
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 26/253 (10%)
Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
D+ Y L++ C AG A++++ E+K ++ +V+TYS ++ A
Sbjct: 254 DVIVYTNLVRGWCRAGEISEAEKVFKEMK----LAGIEPNVYTYSIVIDALCRCGQISRA 309
Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
V DML +G PN IT+++L+ AG E+ + ++ +M + GCEP++ N L++A
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEA 369
Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
+ A ++ + K +V + +T + K+ + N +
Sbjct: 370 HCRDENLENAVKVLNTMIKKKCEV------NASTFNTIFRYIEKKRDV--------NGAH 415
Query: 503 SSFDKRFSFK--PTTTTYNILMK----ACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556
+ K K P T TYNILM+ + TD V + EM + PN ++ +L+
Sbjct: 416 RMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDM--VLKMKKEMDDKEVEPNVNTYRLLVT 473
Query: 557 ACGGSGNVEGALQ 569
G G+ A +
Sbjct: 474 MFCGMGHWNNAYK 486
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 136/299 (45%), Gaps = 32/299 (10%)
Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVM 321
D G+ G +KSR + +I+ FN L++ A KF L + + MQ+LG+
Sbjct: 68 DAIGLFGGMVKSRPL----------PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGIS 117
Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
++ +YNIL+ C LA + G++ L + + T S+++ + K
Sbjct: 118 HNLYTYNILINCFCRRSQISLALALLGKMMKLGYEP----SIVTLSSLLNGYCHGKRISD 173
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
A+ + + M+ G P+TIT+++LI+ +A+ L + M+Q GC+PN +++
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 233
Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
+ D AF L +K + + Y D + H+D +
Sbjct: 234 GLCKRGDIDLAFNLLNKMEAAKIEANV-VIYSTVIDSLCKYRHEDDAL----------NL 282
Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILIDA 557
++ + + +P TY+ L+ +C +Y R L+++M ++PN +++ LIDA
Sbjct: 283 FTEMENK-GVRPNVITYSSLI-SCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDA 339
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 111/218 (50%), Gaps = 12/218 (5%)
Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEV 311
+PN+ +ID G +++ +Y+++ +++ +I+ ++SL+N HD L+
Sbjct: 327 NPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD---RLDE 383
Query: 312 YKNMQKLGVMAD----MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
K+M +L + D + +YN L+ C A E++ E+ G + TY+
Sbjct: 384 AKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVG----NTVTYT 439
Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
T++ F A+ A V + M+S GV PN +T+++L++ G +E+AM +FE + ++
Sbjct: 440 TLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 499
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
EP NI+++ +A + + + LF S +L +
Sbjct: 500 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 537
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 137/319 (42%), Gaps = 26/319 (8%)
Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
PN+ +++ G+C GD + + + + + N+ +++++++ L
Sbjct: 223 PNLVTYGVVVN--GLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDAL 280
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
++ M+ GV ++ +Y+ L+ C A + ++ +E K + +V T++ +
Sbjct: 281 NLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDM--IERK--INPNVVTFNAL 336
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+ F A K+ ++M+ + P+ T+SSLIN +++A H+FE M+ C
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
PN N L+ +A + D LFR +S+ + GNT + + H Q+
Sbjct: 397 FPNVVTYNTLINGFCKAKRIDEGVELFRE--MSQRGLV------GNTVTYTTLIHGFFQA 448
Query: 490 IT-NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSP 546
+ V S P TYN L+ C + KA++ ++ + P
Sbjct: 449 RDCDNAQMVFKQMVSD-----GVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 503
Query: 547 NHISWTILIDACGGSGNVE 565
++ I+I+ +G VE
Sbjct: 504 TIYTYNIMIEGMCKAGKVE 522
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 108/249 (43%), Gaps = 12/249 (4%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
+++ + K R AL + + PN+ ++I + + + D
Sbjct: 261 VIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSD 320
Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
+ + + N+ FN+L++ + K ++Y M K + D+ +Y+ L+ C+
Sbjct: 321 MIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM--- 377
Query: 340 TVLAQEIYGEVKHLEAKGVLK---LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
+ E KH+ + K +V TY+T++ F AK +++ +M G+
Sbjct: 378 ----HDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVG 433
Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
NT+T+++LI+ A + A +F++M+ G PN N LL + + ++A +F
Sbjct: 434 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 493
Query: 457 RSWTLSKTQ 465
SK +
Sbjct: 494 EYLQRSKME 502
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 107/251 (42%), Gaps = 45/251 (17%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYM-KSRAIY 279
+ F + F K+ LV A + YD K P+++ ++I+ G C D + +++ ++
Sbjct: 331 VTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN--GFCMHDRLDEAKHMF 388
Query: 280 EDLRSQNVTLNIYVFNSLMN-------------------------------------VNA 302
E + S++ N+ +N+L+N A
Sbjct: 389 ELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQA 448
Query: 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
D V+K M GV ++ +YN LL C G A ++ ++L+ + ++
Sbjct: 449 RDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF---EYLQ-RSKMEPT 504
Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
++TY+ +++ A + + + GV P+ I ++++I+ GL E+A LF
Sbjct: 505 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFR 564
Query: 423 EMLQAGCEPNS 433
+M + G P+S
Sbjct: 565 KMREDGPLPDS 575
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 145/308 (47%), Gaps = 20/308 (6%)
Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHD-LKFTLE 310
+PN+ ++ID G +++ +++++ +++ NI +NSL+N HD L +
Sbjct: 307 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQ 366
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
++ M + D+ +YN L+ C A V E++ + + +G++ + TY+T++
Sbjct: 367 IFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF---RDMSRRGLVG-NTVTYTTLI 422
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
F A A V + M+S GV PN +T+++L++ G +E+AM +FE + ++ E
Sbjct: 423 HGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKME 482
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
P+ NI+ + +A + + + LF S +L + D IS K +
Sbjct: 483 PDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVK----PDVIAYNTMISGFCKKGLKEE 538
Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNH 548
T F+ P + TYN L++A D + + L+ EMR+ + +
Sbjct: 539 AYTL-FIKMKEDGPL-------PDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDA 590
Query: 549 ISWTILID 556
++ ++ D
Sbjct: 591 STYGLVTD 598
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 128/278 (46%), Gaps = 20/278 (7%)
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V N L DL L + M+K + AD+ Y+ ++ + C + A ++ E
Sbjct: 211 VINGLCKRGEPDL--ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTE--- 265
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
++ KG+ + DVFTYS+++ + W A ++ DML + PN +T++SLI+A A G
Sbjct: 266 MDNKGI-RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEG 324
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
+ +A LF+EM+Q +PN N L+ C DR + +TL ++ L +
Sbjct: 325 KLIEAEKLFDEMIQRSIDPNIVTYNSLING---FCMHDRLDEAQQIFTLMVSKDCLPDVV 381
Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYY 530
NT + N K K+ + F S R T TY L+ +D
Sbjct: 382 TYNT--LINGFCKAKKVVDGMELFRDMS-------RRGLVGNTVTYTTLIHGFFQASDCD 432
Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568
+ + +M + G+ PN +++ L+D +G +E A+
Sbjct: 433 NAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAM 470
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 113/246 (45%), Gaps = 6/246 (2%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
+++ + K R + AL + P+++ ++I G + + + D
Sbjct: 241 VIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSD 300
Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+ + + N+ FNSL++ A + K +++ M + + ++ +YN L+ C+
Sbjct: 301 MLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDR 360
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
AQ+I+ + +K L DV TY+T++ F AK +++ DM G+ NT+
Sbjct: 361 LDEAQQIF---TLMVSKDCLP-DVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTV 416
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
T+++LI+ A + A +F++M+ G PN N LL + + ++A +F
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476
Query: 460 TLSKTQ 465
SK +
Sbjct: 477 QKSKME 482
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 139/327 (42%), Gaps = 33/327 (10%)
Query: 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302
+YD ++ LS N + + + + G+ +KSR +I F+ L++ A
Sbjct: 28 SYDGYREKLSR-NALLHLKLDEAVDLFGEMVKSRPFP----------SIVEFSKLLSAIA 76
Query: 303 HDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
KF L + + M+ LGV ++ +YNI++ C A I G++ L
Sbjct: 77 KMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGP--- 133
Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
+ T ++++ F A+ + + M+ G P+T+T+++L++ +A+ L
Sbjct: 134 -SIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 192
Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
E M+ GC+P+ ++ + + D A L K + + Y D +
Sbjct: 193 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADV-VIYSTVIDSLC 251
Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMN 537
H D + N ++ D + +P TY+ L+ +C +Y R L++
Sbjct: 252 KYRHVD-----DALNL-----FTEMDNK-GIRPDVFTYSSLI-SCLCNYGRWSDASRLLS 299
Query: 538 EMRTVGLSPNHISWTILIDACGGSGNV 564
+M ++PN +++ LIDA G +
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKL 326
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 118/231 (51%), Gaps = 15/231 (6%)
Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTL 289
G+ +D A + +D ++ S N+ T+I G+C + + A + + ++S +
Sbjct: 282 GRTKD---AFQVFDEMRERGVSCNIVTYNTLIG--GLCREMKLNEANKVVDQMKSDGINP 336
Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
N+ +N+L++ L L + ++++ G+ + +YNIL+ C G+T A ++
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKM- 395
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
VK +E +G+ K TY+ ++ FA + + A++++ M G+ P+ T+S LI+
Sbjct: 396 --VKEMEERGI-KPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHG 452
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCN-ILLQACVEACQFDRAFRLFR 457
G + +A LF+ M++ CEPN N ++L C E + RA +L +
Sbjct: 453 FCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSY-RALKLLK 502
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 142/334 (42%), Gaps = 37/334 (11%)
Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
SPN+ I T+ID C G+ K++ ++ ++ + N + L+N K E
Sbjct: 195 SPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFE 254
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
+Y+ MQ+ GV ++ +YN ++ C G T A +++ E++ +GV ++ TY+T++
Sbjct: 255 MYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRE---RGV-SCNIVTYNTLI 310
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
A KV + M S G+ PN IT+++LI+ G + +A+ L ++ G
Sbjct: 311 GGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLS 370
Query: 431 PNSQCCNILLQACVEACQFDRAFRLF-----RSWTLSKTQVALGEDYDGNTDRISNMEHK 485
P+ NIL+ A ++ R SK + D +D NME
Sbjct: 371 PSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD---NMEKA 427
Query: 486 DKQSIT-NTPNFVPNSH-YSSFDKRFSFK-------------------PTTTTYNILMKA 524
+ ++ VP+ H YS F K P YN ++
Sbjct: 428 IQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILG 487
Query: 525 CCTD--YYRVKALMNEMRTVGLSPNHISWTILID 556
C + YR L+ EM L+PN S+ +I+
Sbjct: 488 YCKEGSSYRALKLLKEMEEKELAPNVASYRYMIE 521
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 136/333 (40%), Gaps = 47/333 (14%)
Query: 282 LRSQNVTLNIYVFNSLMN------VNAHDLKFTLEV----------YKNMQKLGVMADMA 325
++SQ++ L+I FN +++ N + T V + N K V+ D+
Sbjct: 105 VQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVY 164
Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
S+ IL+K CC AG + ++ E+ +V Y+T++ + A +
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFG----FSPNVVIYTTLIDGCCKKGEIEKAKDL 220
Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
+M G+ N T++ LIN G+ +Q ++E+M + G PN N ++ +
Sbjct: 221 FFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCK 280
Query: 446 ACQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHKDK-----QSITNTPNFV 497
+ AF++F R +S + G R + +K +S PN +
Sbjct: 281 DGRTKDAFQVFDEMRERGVS-CNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLI 339
Query: 498 P-NSHYSSF---------------DKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEM 539
N+ F K P+ TYNIL+ C D ++ EM
Sbjct: 340 TYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEM 399
Query: 540 RTVGLSPNHISWTILIDACGGSGNVEGALQCRF 572
G+ P+ +++TILID S N+E A+Q R
Sbjct: 400 EERGIKPSKVTYTILIDTFARSDNMEKAIQLRL 432
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 12/222 (5%)
Query: 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID-VCGICGDY 272
+C + + L RE L A + D K +PN+ T+ID CG+ G
Sbjct: 300 SCNIVTYNTLIGGLCREM----KLNEANKVVDQMKSDGINPNLITYNTLIDGFCGV-GKL 354
Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
K+ ++ DL+S+ ++ ++ +N L++ D ++ K M++ G+ +Y IL
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTIL 414
Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
+ + N A ++ ++ L L DV TYS ++ F A ++ + M+
Sbjct: 415 IDTFARSDNMEKAIQLRLSMEELG----LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMV 470
Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432
PN + ++++I G +A+ L +EM + PN
Sbjct: 471 EKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPN 512
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 88/372 (23%), Positives = 157/372 (42%), Gaps = 40/372 (10%)
Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
+RY ++I F + +GK + A R K S+PN+ +++ G G
Sbjct: 129 LRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGG 188
Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNM---QKLGVMADMA 325
+ AI+ ++S + + ++ V K EV++ + +K + D
Sbjct: 189 KCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQK 248
Query: 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385
Y++++ AGN A++++ + KGV + V TY++++ ++ K+
Sbjct: 249 MYHMMIYMYKKAGNYEKARKVFS---SMVGKGVPQSTV-TYNSLMSFETS---YKEVSKI 301
Query: 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445
+ M + + P+ ++++ LI A A E+A+ +FEEML AG P + NILL A
Sbjct: 302 YDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAI 361
Query: 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT-PNFVPNSHYSS 504
+ ++A +F+S DRI D S T +V S
Sbjct: 362 SGMVEQAKTVFKSM---------------RRDRI----FPDLWSYTTMLSAYVNASDMEG 402
Query: 505 FDKRF------SFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556
+K F F+P TY L+K A D ++ + +MR G+ N T ++D
Sbjct: 403 AEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 462
Query: 557 ACGGSGNVEGAL 568
A G N AL
Sbjct: 463 ASGRCKNFGSAL 474
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 32/241 (13%)
Query: 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307
KK P+ + +I + G+Y K+R ++ + + V + +NSLM+ K
Sbjct: 239 KKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETS-YKE 297
Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL-------------- 353
++Y MQ+ + D+ SY +L+KA A A ++ E+
Sbjct: 298 VSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLD 357
Query: 354 ---------EAKGVLK--------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
+AK V K D+++Y+T++ + +A + A K + + G P
Sbjct: 358 AFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEP 417
Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
N +T+ +LI A A VE+ M ++E+M +G + N ++ A F A +
Sbjct: 418 NIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWY 477
Query: 457 R 457
+
Sbjct: 478 K 478
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301
+ YD ++ P++ +I G ++ +++E++ V +N L++
Sbjct: 300 KIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAF 359
Query: 302 AHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
A ++ V+K+M++ + D+ SY +L A A + A++ + K ++ G
Sbjct: 360 AISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFF---KRIKVDG-F 415
Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA---CANAGLVEQ 416
+ ++ TY T++K +A A + ++V E M +G+ N +++++A C N G
Sbjct: 416 EPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFG---S 472
Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
A+ ++EM G P+ + N+LL + + A L
Sbjct: 473 ALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKEL 511
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 147/326 (45%), Gaps = 35/326 (10%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMN----VNAHDLKF 307
PN+ +I+ G C M A+ E + S+ ++ N +N L+ N H
Sbjct: 391 PNVITYNALIN--GYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHK--- 445
Query: 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
+ V M + V+ D+ +YN L+ C +GN A Y + + +G++ D +TY+
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSA---YRLLSLMNDRGLVP-DQWTYT 501
Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
+++ +K + A + + + GV PN + +++LI+ AG V++A + E+ML
Sbjct: 502 SMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSK 561
Query: 428 GCEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
C PNS N L+ C + +L + L + V +G +TD I + H+
Sbjct: 562 NCLPNSLTFNALIHGLCADG-------KLKEATLLEEKMVKIGLQPTVSTDTI--LIHR- 611
Query: 487 KQSITNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCTDYYRVKA--LMNEMRTV 542
+ +F + YS F + S KP TY ++ C + + A +M +MR
Sbjct: 612 ---LLKDGDF--DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMREN 666
Query: 543 GLSPNHISWTILIDACGGSGNVEGAL 568
G+SP+ +++ LI G G A
Sbjct: 667 GVSPDLFTYSSLIKGYGDLGQTNFAF 692
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 135/347 (38%), Gaps = 79/347 (22%)
Query: 289 LNIYVFNSLMNVNAHDLKFTL-----EVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
L I +N+L+N A +F L +VY M + V ++ +YN ++ C GN A
Sbjct: 181 LIIGCYNTLLNSLA---RFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEA 237
Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
+ ++ + L D FTY++++ + K A KV +M G N + ++
Sbjct: 238 NQYVSKI----VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTH 293
Query: 404 LINACANAGLVEQAMHLF-----------------------------------EEMLQAG 428
LI+ A +++AM LF +EM + G
Sbjct: 294 LIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETG 353
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK-------TQVALGEDY------DGN 475
+PN +L+ + C+F++A L L K T AL Y +
Sbjct: 354 IKPNIHTYTVLIDSLCSQCKFEKARELL-GQMLEKGLMPNVITYNALINGYCKRGMIEDA 412
Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSS--------FDKRFSFK--PTTTTYNILMKAC 525
D + ME + T T N + + S +K K P TYN L+
Sbjct: 413 VDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQ 472
Query: 526 C-----TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
C YR+ +LMN+ GL P+ ++T +ID+ S VE A
Sbjct: 473 CRSGNFDSAYRLLSLMNDR---GLVPDQWTYTSMIDSLCKSKRVEEA 516
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 10/215 (4%)
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYED 281
+ + + K + + A +D+ ++ +PN+ + +ID G C G ++ + E
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALID--GYCKAGKVDEAHLMLEK 557
Query: 282 LRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+ S+N N FN+L++ D LK + + M K+G+ +++ IL+ G+
Sbjct: 558 MLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD 617
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
Y + + + G K D TY+T ++ + A + M GV+P+
Sbjct: 618 ---FDHAYSRFQQMLSSGT-KPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLF 673
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
T+SSLI + G A + + M GCEP+
Sbjct: 674 TYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQH 708
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 30/208 (14%)
Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
KL + Y+T++ A +V +ML V PN T++ ++N G VE+A
Sbjct: 180 KLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQ 239
Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS---KTQVALGEDYDG-- 474
++++AG +P+ L+ + D AF++F L + +VA G
Sbjct: 240 YVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLC 299
Query: 475 ---NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR 531
D ++ K K D+ F PT TY +L+K+ C +
Sbjct: 300 VARRIDEAMDLFVKMKD-----------------DECF---PTVRTYTVLIKSLCGSERK 339
Query: 532 VKA--LMNEMRTVGLSPNHISWTILIDA 557
+A L+ EM G+ PN ++T+LID+
Sbjct: 340 SEALNLVKEMEETGIKPNIHTYTVLIDS 367
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 103/259 (39%), Gaps = 42/259 (16%)
Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
+ YN LL + G +++Y E+ LE K + +++TY+ +V + + A
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEM--LEDK--VCPNIYTYNKMVNGYCKLGNVEEAN 238
Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
+ ++ AG+ P+ T++SLI ++ A +F EM GC N L+
Sbjct: 239 QYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGL 298
Query: 444 VEACQFDRAFRLF------------RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
A + D A LF R++T+ + E + + ME
Sbjct: 299 CVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEET------ 352
Query: 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHI 549
KP TY +L+ + C+ + + + L+ +M GL PN I
Sbjct: 353 ------------------GIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVI 394
Query: 550 SWTILIDACGGSGNVEGAL 568
++ LI+ G +E A+
Sbjct: 395 TYNALINGYCKRGMIEDAV 413
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 17/146 (11%)
Query: 304 DLKFTLEVYKNMQK-LGVMADMASYNILLKACCL------AGNTVLAQEIYGEVKHLEAK 356
+L+ +V+ +MQ+ G+ +N LL CC A V G + LE+
Sbjct: 775 NLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESC 834
Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
VL I ++ + + V +++L G + + W +I+ GLVE
Sbjct: 835 KVL---------ICGLYKKGEK-ERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEA 884
Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQA 442
LF M + GC+ +SQ ++L++
Sbjct: 885 FYELFNVMEKNGCKFSSQTYSLLIEG 910
Score = 40.0 bits (92), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%)
Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
N + +E+ + M + V + SY L+ C GN +A++++ H++ +
Sbjct: 737 NMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVF---DHMQRNEGIS 793
Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
++ ++ K A KV +DM+ G P + LI G E+ +
Sbjct: 794 PSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSV 853
Query: 421 FEEMLQAG 428
F+ +LQ G
Sbjct: 854 FQNLLQCG 861
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 58/288 (20%)
Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332
S ++E +RS + ++ L+N V +++K M KLGV+A++ YN+L+
Sbjct: 152 SIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVH 211
Query: 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
AC +G+ A+++ E +E KGV D+FTY+T++ V+ AL V++ M +
Sbjct: 212 ACSKSGDPEKAEKLLSE---MEEKGVFP-DIFTYNTLISVYCKKSMHFEALSVQDRMERS 267
Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
GV PN +T++S I+ + G + +A LF E ++ N L+ D A
Sbjct: 268 GVAPNIVTYNSFIHGFSREGRMREATRLFRE-IKDDVTANHVTYTTLIDGYCRMNDIDEA 326
Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512
RL ME + F
Sbjct: 327 LRLREV-----------------------MESR------------------------GFS 339
Query: 513 PTTTTYNILMKACCTDYYRVKA---LMNEMRTVGLSPNHISWTILIDA 557
P TYN +++ C D R++ L+ EM + P++I+ LI+A
Sbjct: 340 PGVVTYNSILRKLCED-GRIREANRLLTEMSGKKIEPDNITCNTLINA 386
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 9/191 (4%)
Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN-AHDLKF-TLEVY 312
N+++ ++ C GD K+ + ++ + V +I+ +N+L++V + F L V
Sbjct: 202 NIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQ 261
Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH-LEAKGVLKLDVFTYSTIVK 371
M++ GV ++ +YN + G A ++ E+K + A V TY+T++
Sbjct: 262 DRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHV------TYTTLID 315
Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
+ AL+++E M S G +P +T++S++ G + +A L EM EP
Sbjct: 316 GYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEP 375
Query: 432 NSQCCNILLQA 442
++ CN L+ A
Sbjct: 376 DNITCNTLINA 386
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 105/241 (43%), Gaps = 11/241 (4%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
+ + +F+ F ++ + A R + K +++ N T+ID G C D ++ +
Sbjct: 274 VTYNSFIHGFSREGRMREATRLFREIKDDVTA-NHVTYTTLID--GYCRMNDIDEALRLR 330
Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
E + S+ + + +NS++ D ++ + M + D + N L+ A C
Sbjct: 331 EVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKI 390
Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
+ V A ++ + K +E+ LKLD+++Y ++ F + A + M+ G +P
Sbjct: 391 EDMVSAVKV--KKKMIESG--LKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPG 446
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
T+S L++ N ++ L EE + G + L++ + Q D A LF
Sbjct: 447 YATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKVLFE 506
Query: 458 S 458
S
Sbjct: 507 S 507
Score = 40.8 bits (94), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 37/219 (16%)
Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
+S ++ +A A ++ V E + S G+ P+ + L+N+ L + +F++M+
Sbjct: 136 FSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMV 195
Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
+ G N N+L+ AC ++ ++A +L +S ME K
Sbjct: 196 KLGVVANIHVYNVLVHACSKSGDPEKAEKL-----------------------LSEMEEK 232
Query: 486 DKQSITNTPNFV------PNSHYSSFD-----KRFSFKPTTTTYNILMKACCTDYYRVKA 534
T N + + H+ + +R P TYN + + +A
Sbjct: 233 GVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREA 292
Query: 535 --LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
L E++ ++ NH+++T LID +++ AL+ R
Sbjct: 293 TRLFREIKD-DVTANHVTYTTLIDGYCRMNDIDEALRLR 330
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 134/312 (42%), Gaps = 28/312 (8%)
Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
PN+Y ++D G C G ++ + ++ + + N FN L++ H + +
Sbjct: 422 PNVYSYTILVD--GFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAV 479
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
E+++ M + G D+ ++N L+ C A + ++ + ++GV+ + TY+T+
Sbjct: 480 EIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWL---LRDMISEGVVA-NTVTYNTL 535
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+ F + A K+ +M+ G + IT++SLI AG V++A LFE+ML+ G
Sbjct: 536 INAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGH 595
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTL--SKTQVALGEDYDGNTDRISNMEHKDK 487
P++ CNIL+ + + A + L S + R +E
Sbjct: 596 APSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655
Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
+P P T T+N LM C + A L++E G
Sbjct: 656 MFRKLQAEGIP--------------PDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFV 701
Query: 546 PNHISWTILIDA 557
PNH +W+IL+ +
Sbjct: 702 PNHRTWSILLQS 713
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 134/285 (47%), Gaps = 23/285 (8%)
Query: 291 IYVFNSLMN--VNAHDLKFTLEVYKNM-QKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
I +FN+L++ V L V +M G++ D+ +YN L+ G LA E+
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
++++ KG K +V++Y+ +V F A V +M + G+ PNT+ ++ LI+A
Sbjct: 413 HDMRN---KGC-KPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISA 468
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
+ +A+ +F EM + GC+P+ N L+ E + A L R +S+ VA
Sbjct: 469 FCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRD-MISEGVVA 527
Query: 468 LGEDYDGNTDR-ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
Y+ + + E K+ + + N F S D+ TYN L+K C
Sbjct: 528 NTVTYNTLINAFLRRGEIKEARKLVNEMVF----QGSPLDE--------ITYNSLIKGLC 575
Query: 527 --TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
+ + ++L +M G +P++IS ILI+ SG VE A++
Sbjct: 576 RAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVE 620
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 28/230 (12%)
Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
+FT+ ++K F AL + DM G PN++ + +LI++ + V +A+ L E
Sbjct: 217 LFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLE 276
Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRA-----------FRLFRSWTLSKTQVALGED 471
EM GC P+++ N + C+FDR R F ++ + G
Sbjct: 277 EMFLMGCVPDAETFN---DVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLC 333
Query: 472 YDGNTDRISNMEH---KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
G D ++ + K + I NT +H D + T+Y I+ C +
Sbjct: 334 KIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYN 393
Query: 529 -----YYR------VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
Y++ ++++MR G PN S+TIL+D G ++ A
Sbjct: 394 SLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 443
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 110/260 (42%), Gaps = 37/260 (14%)
Query: 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY--EDLRS 284
+ F K+ + A+ + + P++Y ++I G+C A++ D+ S
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLIS--GLCEVDEIKHALWLLRDMIS 522
Query: 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342
+ V N +N+L+N + ++K ++ M G D +YN L+K C AG
Sbjct: 523 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDK 582
Query: 343 AQEIYG----------------------------EVKHLEAKGVLK---LDVFTYSTIVK 371
A+ ++ E + + VL+ D+ T+++++
Sbjct: 583 ARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLIN 642
Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
A + L + + + G+ P+T+T+++L++ G V A L +E ++ G P
Sbjct: 643 GLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVP 702
Query: 432 NSQCCNILLQACVEACQFDR 451
N + +ILLQ+ + DR
Sbjct: 703 NHRTWSILLQSIIPQETLDR 722
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
P +I + + ++ + ++ A ++ + +P+ C +I+ G+C M A
Sbjct: 561 PLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILIN--GLCRSGMVEEA 618
Query: 278 I--YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
+ +++ + T +I FNSL+N A ++ L +++ +Q G+ D ++N L+
Sbjct: 619 VEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSW 678
Query: 334 CCLAG 338
C G
Sbjct: 679 LCKGG 683
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 134/295 (45%), Gaps = 44/295 (14%)
Query: 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276
V D F + +R +G +++ + K+ SP++ +++ + G +
Sbjct: 134 VKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAH 193
Query: 277 AIYEDLR-SQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKA 333
+++++R + VT + Y FN+L+N + + ++K+M+ D+ +YN ++
Sbjct: 194 DLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDG 253
Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
C AG +A + + L+ + +V +Y+T+V+ + + A+ V DMLS G
Sbjct: 254 LCRAGKVKIAHNVLSGM--LKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRG 311
Query: 394 VTPNTITWSSLI----------------------------NACA---------NAGLVEQ 416
+ PN +T+++LI +AC +AG ++
Sbjct: 312 LKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDA 371
Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471
AM +F+EML P+S ++L++ +FDRA LF L + +V LG+D
Sbjct: 372 AMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNE--LFEKEVLLGKD 424
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 131/309 (42%), Gaps = 70/309 (22%)
Query: 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--------NAHDLKFTLEVY 312
++I G G + +S +++ ++ ++ ++ FNSL+++ AHDL +
Sbjct: 143 SLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDL------F 196
Query: 313 KNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
M++ GV D ++N L+ C + E + K +E DV TY+TI+
Sbjct: 197 DEMRRTYGVTPDSYTFNTLINGFC---KNSMVDEAFRIFKDMELYHC-NPDVVTYNTIID 252
Query: 372 VFADAKWWQMALKVKEDML--SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
A ++A V ML + V PN +++++L+ +++A+ +F +ML G
Sbjct: 253 GLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGL 312
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
+PN+ N L++ EA ++D + +G GN
Sbjct: 313 KPNAVTYNTLIKGLSEAHRYDEI-----------KDILIG----GN-------------- 343
Query: 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM---NEMRTVGLSP 546
D +F P T+NIL+KA C D + A M EM + L P
Sbjct: 344 ----------------DAFTTFAPDACTFNILIKAHC-DAGHLDAAMKVFQEMLNMKLHP 386
Query: 547 NHISWTILI 555
+ S+++LI
Sbjct: 387 DSASYSVLI 395
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 114/262 (43%), Gaps = 18/262 (6%)
Query: 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
L+ V A L+F + + G S+ ++L+ A N +A+ ++ +
Sbjct: 77 LIKVPADGLRF----FDWVSNKGFSHKEQSFFLMLEFLGRARNLNVARNFLFSIER-RSN 131
Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
G +KL ++++++ + +A +Q ++K+ + M G++P+ +T++SL++ G
Sbjct: 132 GCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGM 191
Query: 417 AMHLFEEMLQA-GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
A LF+EM + G P+S N L+ + D AFR+F+ L Y N
Sbjct: 192 AHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMEL----------YHCN 241
Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL 535
D ++ D N K P +Y L++ C +A+
Sbjct: 242 PDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAV 301
Query: 536 M--NEMRTVGLSPNHISWTILI 555
+ ++M + GL PN +++ LI
Sbjct: 302 LVFHDMLSRGLKPNAVTYNTLI 323
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 152/342 (44%), Gaps = 22/342 (6%)
Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
K D V LR Y ++ ++ + II GD K+ + ++ ++
Sbjct: 247 KIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTAT 306
Query: 294 FNSLMNVNAHDLKFTLE---VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
S+++ A D TLE +++ +++ G+ +YN LLK G A+ + V
Sbjct: 307 LVSIISALA-DSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESM---V 362
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
+E +GV D TYS ++ + +A W+ A V ++M + V PN+ +S L+ +
Sbjct: 363 SEMEKRGV-SPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRD 421
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
G ++ + +EM G +P+ Q N+++ + D A F L E
Sbjct: 422 RGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDR--------MLSE 473
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD-- 528
+ DR++ D + + V + + ++R P TTYNI++ +
Sbjct: 474 GIE--PDRVTWNTLIDCHC-KHGRHIVAEEMFEAMERRGCL-PCATTYNIMINSYGDQER 529
Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
+ +K L+ +M++ G+ PN ++ T L+D G SG A++C
Sbjct: 530 WDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIEC 571
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/389 (21%), Positives = 157/389 (40%), Gaps = 62/389 (15%)
Query: 211 IRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270
+R + I PR + ++ + K L A +K SP+ + +ID G
Sbjct: 330 LRQSGIKPRTRA-YNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAG 388
Query: 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYN 328
+ +R + +++ + +V N +VF+ L+ + + + T +V K M+ +GV D YN
Sbjct: 389 RWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYN 448
Query: 329 I-----------------------------------LLKACCLAGNTVLAQEIYGEVKHL 353
+ L+ C G ++A+E++ + +
Sbjct: 449 VVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF---EAM 505
Query: 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413
E +G L TY+ ++ + D + W ++ M S G+ PN +T ++L++ +G
Sbjct: 506 ERRGCLPCAT-TYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGR 564
Query: 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDRAFRLFRSWTLSKTQVALGE 470
A+ EEM G +P+S N L+ A + + Q AFR+ S L + +AL
Sbjct: 565 FNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNS 624
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTD 528
+ + + +D ++ + K KP TY LMKA
Sbjct: 625 LINAFGE-----DRRDAEAFA----------VLQYMKENGVKPDVVTYTTLMKALIRVDK 669
Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDA 557
+ +V + EM G P+ + ++L A
Sbjct: 670 FQKVPVVYEEMIMSGCKPDRKARSMLRSA 698
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 144/320 (45%), Gaps = 48/320 (15%)
Query: 274 KSRAIYED-LRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNIL 330
+S +YE L SQ TL +N+L+ A +D++ L + M++ G +D +Y+++
Sbjct: 179 RSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLV 238
Query: 331 LKACCLAG--NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388
+++ + ++V+ +Y E++ + L+LDV + I+ FA + AL++
Sbjct: 239 IQSLTRSNKIDSVMLLRLYKEIE----RDKLELDVQLVNDIIMGFAKSGDPSKALQLLGM 294
Query: 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448
+ G++ T T S+I+A A++G +A LFEE+ Q+G +P ++ N LL+ V+
Sbjct: 295 AQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGP 354
Query: 449 FDRAFRLF-----RSWTLSKTQVALGEDYDGNTDR-------ISNMEHKDKQSITNTPN- 495
A + R + + +L D N R + ME D Q PN
Sbjct: 355 LKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQ-----PNS 409
Query: 496 FVPNSHYSSFDKR---------------FSFKPTTTTYNILM----KACCTDYYRVKALM 536
FV + + F R KP YN+++ K C D+
Sbjct: 410 FVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH--AMTTF 467
Query: 537 NEMRTVGLSPNHISWTILID 556
+ M + G+ P+ ++W LID
Sbjct: 468 DRMLSEGIEPDRVTWNTLID 487
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 108/257 (42%), Gaps = 53/257 (20%)
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
M + G + +YN L+ + A A ++ +++ + K D TY T++ + A
Sbjct: 390 MVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQ----EAGCKPDRVTYCTLIDIHA 445
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
A + +A+ + + M + G++P+T T+S +IN AG + A LF EM+ GC PN
Sbjct: 446 KAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLV 505
Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
NI++ +A + A +L+R D Q+
Sbjct: 506 TYNIMMDLHAKARNYQNALKLYR----------------------------DMQNA---- 533
Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWT 552
F+P TY+I+M+ C +A+ EM+ P+ +
Sbjct: 534 ---------------GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYG 578
Query: 553 ILIDACGGSGNVEGALQ 569
+L+D G +GNVE A Q
Sbjct: 579 LLVDLWGKAGNVEKAWQ 595
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 108/235 (45%), Gaps = 7/235 (2%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
+ +C + K L A+ Y + SP+ + II+ G G + ++ +
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCE 494
Query: 282 LRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+ Q T N+ +N +M+++A + + L++Y++MQ G D +Y+I+++ G
Sbjct: 495 MVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY 554
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
A+ ++ E ++ K + D Y +V ++ A + A + + ML AG+ PN
Sbjct: 555 LEEAEAVFTE---MQQKNWIP-DEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVP 610
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-CQFDRAF 453
T +SL++ + +A L + ML G P+ Q +LL C + + D F
Sbjct: 611 TCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMGF 665
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 113/250 (45%), Gaps = 12/250 (4%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
+ + + +G+ L A+ ++ ++ P+ T+ID+ G + +Y+
Sbjct: 400 VTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQR 459
Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+++ ++ + + ++ ++N A L +++ M G ++ +YNI++ A N
Sbjct: 460 MQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN 519
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
A ++Y ++++ + D TYS +++V + + A V +M P+
Sbjct: 520 YQNALKLYRDMQN----AGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEP 575
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
+ L++ AG VE+A ++ ML AG PN CN LL F R ++ ++
Sbjct: 576 VYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLST------FLRVNKIAEAY 629
Query: 460 TLSKTQVALG 469
L + +ALG
Sbjct: 630 ELLQNMLALG 639
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 113/237 (47%), Gaps = 6/237 (2%)
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
+ V G+ + + + D + PN +I G ++ ++ ++
Sbjct: 367 YTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQ 426
Query: 284 SQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
+ + +L++++A L +++Y+ MQ G+ D +Y++++ AG+
Sbjct: 427 EAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLP 486
Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
A +++ E + +G ++ TY+ ++ + A A+ +Q ALK+ DM +AG P+ +T+
Sbjct: 487 AAHKLFCE---MVDQGCTP-NLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY 542
Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
S ++ + G +E+A +F EM Q P+ +L+ +A ++A++ +++
Sbjct: 543 SIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQA 599
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 11/209 (5%)
Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
PN+ C TI++ G C G ++ + ++ V N++VFNSL+ +N +D+
Sbjct: 529 PNVRTCGTIVN--GYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVG 586
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
EV M++ GV D+ +++ L+ A G+ +EIY ++ +G + D+ +S +
Sbjct: 587 EVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDM----LEGGIDPDIHAFSIL 642
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-AG 428
K +A A + A ++ M GV PN + ++ +I+ +AG +++AM ++++M G
Sbjct: 643 AKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVG 702
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
PN L+ EA Q +A L +
Sbjct: 703 LSPNLTTYETLIWGFGEAKQPWKAEELLK 731
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
K + TY+T+V K + L + + G+ P+TI ++++INA + +G ++QAM
Sbjct: 351 KPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 410
Query: 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479
+FE+M ++GC+P + N L++ + + + + RL + L ++ DR
Sbjct: 411 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL--------DMMLRDEMLQPNDRT 462
Query: 480 SNMEHK---DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
N+ + +++ I N V + + KP T+N L KA
Sbjct: 463 CNILVQAWCNQRKIEEAWNIVYKM------QSYGVKPDVVTFNTLAKA 504
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 78/371 (21%), Positives = 146/371 (39%), Gaps = 56/371 (15%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
I + V +++ S L +K+ P+ + II+ G+ ++ I+E
Sbjct: 355 ITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEK 414
Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM-----ASYNILLKACCL 336
++ FN+L + + LE + + + +M + NIL++A C
Sbjct: 415 MKESGCKPTASTFNTL--IKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC- 471
Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM-----LS 391
N +E + V +++ GV K DV T++T+ K +A + EDM L
Sbjct: 472 --NQRKIEEAWNIVYKMQSYGV-KPDVVTFNTLAKAYARIG----STCTAEDMIIPRMLH 524
Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
V PN T +++N G +E+A+ F M + G PN N L++ +
Sbjct: 525 NKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNI----- 579
Query: 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR--- 508
D DG + + ME + T + + N+ S D +
Sbjct: 580 ------------------NDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCE 621
Query: 509 --------FSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
P ++IL K A + + + ++N+MR G+ PN + +T +I
Sbjct: 622 EIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGW 681
Query: 559 GGSGNVEGALQ 569
+G ++ A+Q
Sbjct: 682 CSAGEMKKAMQ 692
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 83/193 (43%), Gaps = 5/193 (2%)
Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
+F + ++ F D+ D ++ P++ T+++ GD + IY D+
Sbjct: 568 VFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDM 627
Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
+ +I+ F+ L A + + ++ M+K GV ++ Y ++ C AG
Sbjct: 628 LEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEM 687
Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
A ++Y ++ + L ++ TY T++ F +AK A ++ +DM V P T
Sbjct: 688 KKAMQVYKKMCGIVG---LSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKT 744
Query: 401 WSSLINACANAGL 413
+ + + G+
Sbjct: 745 MQLIADGWKSIGV 757
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 112/214 (52%), Gaps = 12/214 (5%)
Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEV 311
+PN+ +ID G +++ +Y+++ +++ +I+ ++SL+N HD L+
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD---RLDE 378
Query: 312 YKNMQKLGVMAD----MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
K+M +L + D + +YN L+K C A E++ E+ G + TY+
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG----NTVTYN 434
Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
T+++ A MA K+ + M+S GV P+ IT+S L++ G +E+A+ +FE + ++
Sbjct: 435 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
EP+ NI+++ +A + + + LF S +L
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 528
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 122/260 (46%), Gaps = 45/260 (17%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYM-KSRAIY 279
+ F + F K+ LV A + YD K P+++ ++I+ G C D + +++ ++
Sbjct: 326 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN--GFCMHDRLDEAKHMF 383
Query: 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
E + S++ N+ +N+L+ A ++ +E+++ M + G++ + +YN L++ A
Sbjct: 384 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQA 443
Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL---------KVKED 388
G+ +AQ+I+ K + + GV D+ TYS ++ + AL K++ D
Sbjct: 444 GDCDMAQKIF---KKMVSDGVPP-DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 499
Query: 389 MLS--------------------------AGVTPNTITWSSLINACANAGLVEQAMHLFE 422
+ + GV PN I ++++I+ GL E+A LF
Sbjct: 500 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFR 559
Query: 423 EMLQAGCEPNSQCCNILLQA 442
EM + G PNS N L++A
Sbjct: 560 EMKEDGTLPNSGTYNTLIRA 579
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 142/320 (44%), Gaps = 34/320 (10%)
Query: 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302
+YD +K S N+ + + D + G+ ++SR + +I FN L++ A
Sbjct: 44 SYDYREKL--SRNVLLDLKLDDAVDLFGEMVQSRPLP----------SIVEFNKLLSAIA 91
Query: 303 HDLKFTLEVY--KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
KF L + + MQ L + D+ SYNIL+ C LA + G++ L +
Sbjct: 92 KMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEP--- 148
Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
D+ T S+++ + K A+ + + M PNT+T+++LI+ +A+ L
Sbjct: 149 -DIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVAL 207
Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
+ M+ GC+P+ ++ + D A L + K + + Y D +
Sbjct: 208 IDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADV-VIYTTIIDALC 266
Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMN 537
N +++ + N ++ D + +P TYN L++ C +Y R L++
Sbjct: 267 NY-----KNVNDALNL-----FTEMDNK-GIRPNVVTYNSLIRCLC-NYGRWSDASRLLS 314
Query: 538 EMRTVGLSPNHISWTILIDA 557
+M ++PN ++++ LIDA
Sbjct: 315 DMIERKINPNVVTFSALIDA 334
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 6/227 (2%)
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
K+ D+ AL +K ++ I TIID + + ++ ++ ++ + N+
Sbjct: 232 KRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 291
Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
+NSL+ N + +M + + ++ +++ L+ A G V A+++Y E+
Sbjct: 292 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 351
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
K + D+FTYS+++ F A + E M+S PN +T+++LI
Sbjct: 352 ----IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCK 407
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
A VE+ M LF EM Q G N+ N L+Q +A D A ++F+
Sbjct: 408 AKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 134/311 (43%), Gaps = 26/311 (8%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EV 311
PN+ ++I G + + + D+ + + N+ F++L++ + K ++
Sbjct: 288 PNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 347
Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK---LDVFTYST 368
Y M K + D+ +Y+ L+ C+ + E KH+ + K +V TY+T
Sbjct: 348 YDEMIKRSIDPDIFTYSSLINGFCM-------HDRLDEAKHMFELMISKDCFPNVVTYNT 400
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
++K F AK + +++ +M G+ NT+T+++LI AG + A +F++M+ G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
P+ +ILL + + ++A +F SK + + Y N I M K
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDI---YTYNI-MIEGMCKAGK- 515
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR--VKALMNEMRTVGLSP 546
+ + + + S + KP Y ++ C + AL EM+ G P
Sbjct: 516 -VEDGWDL-----FCSLSLK-GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLP 568
Query: 547 NHISWTILIDA 557
N ++ LI A
Sbjct: 569 NSGTYNTLIRA 579
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
GD ++ I++ + S V +I ++ L++ L+ L V++ +QK + D+ +Y
Sbjct: 444 GDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTY 503
Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
NI+++ C AG +++ L KGV K +V Y+T++ F + A +
Sbjct: 504 NIMIEGMCKAGKVEDGWDLFCS---LSLKGV-KPNVIIYTTMISGFCRKGLKEEADALFR 559
Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
+M G PN+ T+++LI A G + L +EM G
Sbjct: 560 EMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCG 600
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 152/340 (44%), Gaps = 20/340 (5%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
++F + K R + AL + + PN+ ++I G + + + D
Sbjct: 261 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 320
Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTL--EVYKNMQKLGVMADMASYNILLKACCLAGN 339
+ + + N+ FN+L++ + KF ++Y +M K + D+ +YN L+ C+
Sbjct: 321 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDR 380
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
A++++ + + +K DV TY+T++K F +K + ++ +M G+ +T+
Sbjct: 381 LDKAKQMF---EFMVSKDCFP-DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 436
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
T+++LI + G + A +F++M+ G P+ +ILL + ++A +F
Sbjct: 437 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD-- 494
Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519
+ K+++ L D T I M K + + + + S + KP TYN
Sbjct: 495 YMQKSEIKL--DIYIYTTMIEGMCKAGK--VDDGWDL-----FCSLSLK-GVKPNVVTYN 544
Query: 520 ILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
++ C+ AL+ +M+ G PN ++ LI A
Sbjct: 545 TMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRA 584
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 129/299 (43%), Gaps = 32/299 (10%)
Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVM 321
D G+ G +KSR + +I FN L++ A KF + + + MQ+L ++
Sbjct: 68 DAIGLFGGMVKSRPLP----------SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIV 117
Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
+ +YNIL+ C LA + G++ L + + T S+++ + K
Sbjct: 118 HGLYTYNILINCFCRRSQISLALALLGKMMKLGYEP----SIVTLSSLLNGYCHGKRISD 173
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
A+ + + M+ G P+TIT+++LI+ +A+ L + M+Q GC+PN +++
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 233
Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
+ D A L +K + + ++ D + H D + N
Sbjct: 234 GLCKRGDTDLALNLLNKMEAAKIEADV-VIFNTIIDSLCKYRHVD-----DALNLFKEME 287
Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILIDA 557
+P TY+ L+ C+ Y R L+++M ++PN +++ LIDA
Sbjct: 288 TK------GIRPNVVTYSSLISCLCS-YGRWSDASQLLSDMIEKKINPNLVTFNALIDA 339
Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 111/262 (42%), Gaps = 32/262 (12%)
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
M + G ++ +Y +++ C G+T LA + + +EA + + DV ++TI+
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDTDLALNL---LNKMEAAKI-EADVVIFNTIIDSLC 271
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
+ AL + ++M + G+ PN +T+SSLI+ + G A L +M++ PN
Sbjct: 272 KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 331
Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
N L+ A V+ +F A +L YD R + + S+ N
Sbjct: 332 TFNALIDAFVKEGKFVEAEKL----------------YDDMIKRSIDPDIFTYNSLVN-- 373
Query: 495 NFVPNSHYSSFDKRFSFK------PTTTTYNILMKACCTDYYRVK---ALMNEMRTVGLS 545
F + + F F P TYN L+K C RV+ L EM GL
Sbjct: 374 GFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKS-KRVEDGTELFREMSHRGLV 432
Query: 546 PNHISWTILIDACGGSGNVEGA 567
+ +++T LI G+ + A
Sbjct: 433 GDTVTYTTLIQGLFHDGDCDNA 454
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%)
Query: 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASY 327
GD ++ +++ + S V +I ++ L++ N L+ LEV+ MQK + D+ Y
Sbjct: 449 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIY 508
Query: 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387
+++ C AG +++ L KGV K +V TY+T++ + Q A + +
Sbjct: 509 TTMIEGMCKAGKVDDGWDLFCS---LSLKGV-KPNVVTYNTMISGLCSKRLLQEAYALLK 564
Query: 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
M G PN+ T+++LI A G + L EM
Sbjct: 565 KMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 601
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/321 (21%), Positives = 130/321 (40%), Gaps = 68/321 (21%)
Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY------VFNSLMNVNAHDLKFT 308
N+ IC CG G + +A+ + ++S+ + + NSL+ V + K
Sbjct: 188 NLLICS-----CGEAG--LAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQY--KLI 238
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
VYK M + G D+ +YNILL G ++ E+ A+ D +TY+
Sbjct: 239 EWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEM----ARDGFSPDSYTYNI 294
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
++ + AL M G+ P+ + +++LI+ + AG +E + +EM++AG
Sbjct: 295 LLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAG 354
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
C P+ C +++ V + + D+A +FR T+ K Q+
Sbjct: 355 CRPDVVCYTVMITGYVVSGELDKAKEMFREMTV-KGQL---------------------- 391
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
P TYN +++ C ++ L+ EM + G +P
Sbjct: 392 ------------------------PNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNP 427
Query: 547 NHISWTILIDACGGSGNVEGA 567
N + ++ L+ +G + A
Sbjct: 428 NFVVYSTLVSYLRKAGKLSEA 448
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 90/189 (47%), Gaps = 6/189 (3%)
Query: 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-- 299
R +D + SP+ Y ++ + G + + ++ + ++ + +L++
Sbjct: 275 RLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGL 334
Query: 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359
A +L+ M K G D+ Y +++ ++G A+E++ E + KG L
Sbjct: 335 SRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFRE---MTVKGQL 391
Query: 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419
+VFTY+++++ A ++ A + ++M S G PN + +S+L++ AG + +A
Sbjct: 392 P-NVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARK 450
Query: 420 LFEEMLQAG 428
+ EM++ G
Sbjct: 451 VIREMVKKG 459
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 6/182 (3%)
Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLK--FTLEVYKNMQKLGVMADMASYNILLKACC 335
+++++ + + Y +N L+++ K L +M+++G+ + Y L+
Sbjct: 276 LFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLS 335
Query: 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395
AGN + E+ K + DV Y+ ++ + + A ++ +M G
Sbjct: 336 RAGNLEACKYFLDEM----VKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQL 391
Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
PN T++S+I AG +A L +EM GC PN + L+ +A + A ++
Sbjct: 392 PNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKV 451
Query: 456 FR 457
R
Sbjct: 452 IR 453
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 117/261 (44%), Gaps = 21/261 (8%)
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
+E++ M++ GV AD +YN L+ C +G A + ++ + + ++ +V T++
Sbjct: 194 VELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARL---MRDMVMRDIVP-NVITFTA 249
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
++ VF + A+K+ E+M V P+ T++SLIN G V++A + + M+ G
Sbjct: 250 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 309
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
C P+ N L+ ++ + D +LFR Q L D I +
Sbjct: 310 CLPDVVTYNTLINGFCKSKRVDEGTKLFR----EMAQRGLVGDTITYNTIIQGYFQAGR- 364
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSP 546
P++ F R +P TY+IL+ C ++ KAL+ M+ +
Sbjct: 365 ---------PDAAQEIF-SRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIEL 414
Query: 547 NHISWTILIDACGGSGNVEGA 567
+ ++ I+I GNVE A
Sbjct: 415 DITTYNIVIHGMCKIGNVEDA 435
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 105/230 (45%), Gaps = 40/230 (17%)
Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGV 320
V G+C G + + + D+ +++ N+ F ++++V + KF+ +++Y+ M + V
Sbjct: 216 VAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCV 275
Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
D+ +YN L+ C+ G A+++ + + KG L DV TY+T++ F +K
Sbjct: 276 DPDVFTYNSLINGLCMHGRVDEAKQM---LDLMVTKGCLP-DVVTYNTLINGFCKSKRVD 331
Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGL--------------------------- 413
K+ +M G+ +TIT++++I AG
Sbjct: 332 EGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGL 391
Query: 414 -----VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
VE+A+ LFE M ++ E + NI++ + + A+ LFRS
Sbjct: 392 CMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRS 441
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 40/285 (14%)
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V + + +DL +L + +M+ G+ D+ SYNI++ C V+A + G++
Sbjct: 75 VLSKIAKSKNYDLVISL--FHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMK 132
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+ DV T S+++ F A+ + M G P+ + ++++I+ G
Sbjct: 133 FGYEP----DVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIG 188
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
LV A+ LF+ M + G ++ N L+ + ++ A RL R +
Sbjct: 189 LVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMR---------- 238
Query: 473 DGNTDRISNMEHKDKQSITNTP---NFVPNSHYSSFDK------RFSFKPTTTTYNILMK 523
D + N+ IT T FV +S K R P TYN L+
Sbjct: 239 ----DIVPNV-------ITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLIN 287
Query: 524 ACCTDYYRV---KALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
C + RV K +++ M T G P+ +++ LI+ S V+
Sbjct: 288 GLCM-HGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVD 331
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 114/246 (46%), Gaps = 14/246 (5%)
Query: 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYM 273
IVP I F + F K+ A++ Y+ + P+++ ++I+ G+C G
Sbjct: 240 IVPNV-ITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLIN--GLCMHGRVD 296
Query: 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331
+++ + + + ++ ++ +N+L+N + + ++++ M + G++ D +YN ++
Sbjct: 297 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 356
Query: 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391
+ AG AQEI+ + + ++ TYS ++ + AL + E+M
Sbjct: 357 QGYFQAGRPDAAQEIFSRMDS-------RPNIRTYSILLYGLCMNWRVEKALVLFENMQK 409
Query: 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451
+ + + T++ +I+ G VE A LF + G +P+ ++ Q+D+
Sbjct: 410 SEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDK 469
Query: 452 AFRLFR 457
+ L+R
Sbjct: 470 SDLLYR 475
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
D R T +I ++ MN L +++NMQK + D+ +YNI++ C GN
Sbjct: 376 DSRPNIRTYSILLYGLCMNWRVEK---ALVLFENMQKSEIELDITTYNIVIHGMCKIGNV 432
Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
A +++ + L KG LK DV +Y+T++ F + W + + M G+ P
Sbjct: 433 EDAWDLF---RSLSCKG-LKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 106/259 (40%), Gaps = 20/259 (7%)
Query: 215 CIVPRADILFCNFV-----REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269
C++ + + + F+ R F KR ++ D K + S + +I+D +
Sbjct: 20 CLLQKGNPVIVPFISRFWGRTFSTKRSSMNLEEEIDLFCKMIQSRPL---PSIVDFSKVL 76
Query: 270 GDYMKSR------AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVM 321
KS+ +++ + + ++Y +N ++N +F L V M K G
Sbjct: 77 SKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYE 136
Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
D+ + + L+ C GN V + V +E G + DV Y+TI+
Sbjct: 137 PDVVTVSSLINGFC-QGNRVF--DAIDLVSKMEEMG-FRPDVVIYNTIIDGSCKIGLVND 192
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
A+++ + M GV + +T++SL+ +G A L +M+ PN ++
Sbjct: 193 AVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVID 252
Query: 442 ACVEACQFDRAFRLFRSWT 460
V+ +F A +L+ T
Sbjct: 253 VFVKEGKFSEAMKLYEEMT 271
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 155/353 (43%), Gaps = 44/353 (12%)
Query: 204 KPDV---NLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICR 260
KPD+ N I C R + F +F +E +K +R PN+
Sbjct: 187 KPDIVAYNAIIDSLCKTKRVNDAF-DFFKEIERK-----GIR-----------PNVVTYT 229
Query: 261 TIIDVCGICGDYMKSRA--IYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQ 316
+++ G+C S A + D+ + +T N+ +++L++ + K E+++ M
Sbjct: 230 ALVN--GLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 287
Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376
++ + D+ +Y+ L+ CL A +++ + +KG L DV +Y+T++ F A
Sbjct: 288 RMSIDPDIVTYSSLINGLCLHDRIDEANQMF---DLMVSKGCLA-DVVSYNTLINGFCKA 343
Query: 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436
K + +K+ +M G+ NT+T+++LI AG V++A F +M G P+
Sbjct: 344 KRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTY 403
Query: 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496
NILL + + ++A +F + K ++ L D T I M K
Sbjct: 404 NILLGGLCDNGELEKALVIFED--MQKREMDL--DIVTYTTVIRGMCKTGKVE------- 452
Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPN 547
S + S + KP TY +M CT + V+AL +M+ GL N
Sbjct: 453 EAWSLFCSLSLK-GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 504
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 18/256 (7%)
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
M ++G D+ +YN ++ + C T + + K +E KG+ + +V TY+ +V
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLC---KTKRVNDAFDFFKEIERKGI-RPNVVTYTALVNGLC 236
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
++ W A ++ DM+ +TPN IT+S+L++A G V +A LFEEM++ +P+
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296
Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
+ L+ C DR + + L ++ L + NT + N K K+
Sbjct: 297 TYSSLING---LCLHDRIDEANQMFDLMVSKGCLADVVSYNT--LINGFCKAKRVEDGMK 351
Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWT 552
F S T TYN L++ D + + ++M G+SP+ ++
Sbjct: 352 LFREMSQR-------GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404
Query: 553 ILIDACGGSGNVEGAL 568
IL+ +G +E AL
Sbjct: 405 ILLGGLCDNGELEKAL 420
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/216 (19%), Positives = 85/216 (39%), Gaps = 50/216 (23%)
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
K +E G+ + D++T++ ++ F +AL + ML G P+ +T SL+N
Sbjct: 109 KKMEVLGI-RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 167
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
V A+ L ++M++ G +P+ N ++ + + + + AF F+
Sbjct: 168 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI----------- 216
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TD 528
+R +P TY L+ C +
Sbjct: 217 ------------------------------------ERKGIRPNVVTYTALVNGLCNSSR 240
Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564
+ L+++M ++PN I+++ L+DA +G V
Sbjct: 241 WSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKV 276
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 112/218 (51%), Gaps = 12/218 (5%)
Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEV 311
+PN+ +ID G +++ +Y+++ +++ +I+ ++SL+N HD L+
Sbjct: 323 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD---RLDE 379
Query: 312 YKNMQKLGVMAD----MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
K+M +L + D + +YN L+K C A E++ E+ G + TY+
Sbjct: 380 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVG----NTVTYT 435
Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
T++ F A+ A V + M+S GV P+ +T+S L++ N G VE A+ +FE + ++
Sbjct: 436 TLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRS 495
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
EP+ NI+++ +A + + + LF S +L +
Sbjct: 496 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 533
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 139/310 (44%), Gaps = 24/310 (7%)
Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
I V G+C GD + ++ + + + + ++N++++ N ++ L ++ M
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285
Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
G+ ++ +YN L++ C G A + ++ +E K + +V T+S ++ F
Sbjct: 286 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM--IERK--INPNVVTFSALIDAFVKEGK 341
Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
A K+ ++M+ + P+ T+SSLIN +++A H+FE M+ C PN N
Sbjct: 342 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 401
Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT-NTPNFV 497
L++ +A + D LFR +S+ + GNT + + H Q+ + V
Sbjct: 402 LIKGFCKAKRVDEGMELFRE--MSQRGLV------GNTVTYTTLIHGFFQARECDNAQIV 453
Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILI 555
S P TY+IL+ C + AL+ ++ + P+ ++ I+I
Sbjct: 454 FKQMVSD-----GVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMI 508
Query: 556 DACGGSGNVE 565
+ +G VE
Sbjct: 509 EGMCKAGKVE 518
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 132/299 (44%), Gaps = 32/299 (10%)
Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVM 321
D + GD +KSR +I F+ L++ A KF L + + MQ LG+
Sbjct: 64 DAVNLFGDMVKSRPFP----------SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGIS 113
Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
++ +Y+IL+ C LA + ++ L + D+ T ++++ F
Sbjct: 114 HNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEP----DIVTLNSLLNGFCHGNRISD 169
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
A+ + M+ G P++ T+++LI+ +A+ L + M+ GC+P+ I++
Sbjct: 170 AVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVN 229
Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
+ D A L + K + + Y+ D + N +++ + N
Sbjct: 230 GLCKRGDIDLALSLLKKMEQGKIEPGV-VIYNTIIDALCNY-----KNVNDALNL----- 278
Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILIDA 557
++ D + +P TYN L++ C +Y R L+++M ++PN ++++ LIDA
Sbjct: 279 FTEMDNK-GIRPNVVTYNSLIRCLC-NYGRWSDASRLLSDMIERKINPNVVTFSALIDA 335
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 132/311 (42%), Gaps = 26/311 (8%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL--EV 311
PN+ ++I G + + + D+ + + N+ F++L++ + K ++
Sbjct: 289 PNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 348
Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK---LDVFTYST 368
Y M K + D+ +Y+ L+ C+ + E KH+ + K +V TY+T
Sbjct: 349 YDEMIKRSIDPDIFTYSSLINGFCM-------HDRLDEAKHMFELMISKDCFPNVVTYNT 401
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
++K F AK +++ +M G+ NT+T+++LI+ A + A +F++M+ G
Sbjct: 402 LIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG 461
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
P+ +ILL + + A +F SK + + Y N I M K
Sbjct: 462 VLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDI---YTYNI-MIEGMCKAGK- 516
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR--VKALMNEMRTVGLSP 546
+ + + + S + KP TY +M C + AL EM+ G P
Sbjct: 517 -VEDGWDL-----FCSLSLK-GVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLP 569
Query: 547 NHISWTILIDA 557
+ ++ LI A
Sbjct: 570 DSGTYNTLIRA 580
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 107/233 (45%), Gaps = 6/233 (2%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
IL+ N + F ++ A++ +K P II GD +S +++
Sbjct: 555 ILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDM 614
Query: 282 LRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+R ++ FN L+N V ++ +E+ M GV A+ +Y +++ G+
Sbjct: 615 MRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGD 674
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
T A E + L+ +G L +D+FTY ++K + Q AL V ++M + + N+
Sbjct: 675 TGKAFEYF---TRLQNEG-LDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSF 730
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
++ LI+ A G V +A L ++M + G +P+ + AC +A +RA
Sbjct: 731 VYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRA 783
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 111/248 (44%), Gaps = 6/248 (2%)
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
F + +KR + A+ D S N + I+ GD K+ + L+
Sbjct: 627 FNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQ 686
Query: 284 SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
++ + ++I+ + +L+ + ++ L V K M + + YNIL+ G+
Sbjct: 687 NEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVW 746
Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
A ++ ++ ++ +GV K D+ TY++ + + A A + E+M + GV PN T+
Sbjct: 747 EAADL---IQQMKKEGV-KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTY 802
Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
++LI A A L E+A+ +EEM G +P+ + LL + + A+ T+
Sbjct: 803 TTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTI 862
Query: 462 SKTQVALG 469
K V G
Sbjct: 863 CKEMVEAG 870
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 138/346 (39%), Gaps = 33/346 (9%)
Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLE 310
+P + +I++ G K+ + ++ + V N+ ++ ++N V D
Sbjct: 481 TPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFA 540
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
V+++M K G+ D+ YN ++ A C GN A + E++ L + + T+ I+
Sbjct: 541 VFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTR----TFMPII 596
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
+A + + +L+V + M G P T++ LIN +E+A+ + +EM AG
Sbjct: 597 HGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVS 656
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG------NTDRI-SNME 483
N ++Q +AF F V + Y+ + R+ S +
Sbjct: 657 ANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIF-TYEALLKACCKSGRMQSALA 715
Query: 484 HKDKQSITNTP--NFVPNSHYSSFDKRF---------------SFKPTTTTYNILMKAC- 525
+ S N P +FV N + +R KP TY + AC
Sbjct: 716 VTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACS 775
Query: 526 -CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570
D R + EM +G+ PN ++T LI + E AL C
Sbjct: 776 KAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSC 821
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 129/314 (41%), Gaps = 26/314 (8%)
Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNM 315
I T++D + D K +++ L+ T + + L+N+ K + LEV + M
Sbjct: 451 IYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVM 510
Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
++ GV ++ +Y++++ + A ++ ++ K +K DV Y+ I+ F
Sbjct: 511 KEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VKEGMKPDVILYNNIISAFCG 566
Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
A++ ++M P T T+ +I+ A +G + +++ +F+ M + GC P
Sbjct: 567 MGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHT 626
Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH---KDKQSITN 492
N L+ VE Q ++A + TL+ +S EH K Q +
Sbjct: 627 FNGLINGLVEKRQMEKAVEILDEMTLAG---------------VSANEHTYTKIMQGYAS 671
Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHIS 550
+ Y + + TY L+KACC AL EM + N
Sbjct: 672 VGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFV 731
Query: 551 WTILIDACGGSGNV 564
+ ILID G+V
Sbjct: 732 YNILIDGWARRGDV 745
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/379 (20%), Positives = 152/379 (40%), Gaps = 62/379 (16%)
Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFT 308
+S P+ ++ G GD ++R +E +R++ +T ++ SL++ A D+
Sbjct: 304 ISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEA 363
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNT---------------VLAQEIYGE---- 349
L + M++ G+ + +Y++++ AG+ L IYG+
Sbjct: 364 LSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYA 423
Query: 350 -------------VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
V+ +E +G+ + Y T++ + + L V + + G TP
Sbjct: 424 HCQTCNMERAEALVREMEEEGI-DAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTP 482
Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
+T+ LIN G + +A+ + M + G + N + ++++ V+ + AF +F
Sbjct: 483 TVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVF 542
Query: 457 RSWTLS--KTQVALGEDYD------GNTDRISNMEHKDKQSITNTP---NFVP--NSHYS 503
K V L + GN DR K+ Q + + P F+P + +
Sbjct: 543 EDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTV-KEMQKLRHRPTTRTFMPIIHGYAK 601
Query: 504 SFDKRFSFK-----------PTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHIS 550
S D R S + PT T+N L+ KA +++EM G+S N +
Sbjct: 602 SGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHT 661
Query: 551 WTILIDACGGSGNVEGALQ 569
+T ++ G+ A +
Sbjct: 662 YTKIMQGYASVGDTGKAFE 680
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/161 (18%), Positives = 70/161 (43%), Gaps = 8/161 (4%)
Query: 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356
+++ N + + + ++ + K + +++K G+ A+E + + + A+
Sbjct: 286 ILDTNGDNWQAVISAFEKISK----PSRTEFGLMVKFYGRRGDMHRARETF---ERMRAR 338
Query: 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416
G+ Y++++ +A + AL M G+ + +T+S ++ + AG E
Sbjct: 339 GITPTSRI-YTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEA 397
Query: 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
A + F+E + N+ ++ A + C +RA L R
Sbjct: 398 ADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVR 438
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/321 (21%), Positives = 127/321 (39%), Gaps = 55/321 (17%)
Query: 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLE 310
SP++ TI+ G ++ + + + ++ ++ + L+ D + ++
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMK 260
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
+ M+ G D+ +YN+L+ C G E + + + G + +V T++ I+
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRL---DEAIKFLNDMPSSGC-QPNVITHNIIL 316
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
+ W A K+ DML G +P+ +T++ LIN GL+ +A+ + E+M Q GC+
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ 376
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
PNS N LL + + DRA
Sbjct: 377 PNSLSYNPLLHGFCKEKKMDRAIEYLE--------------------------------- 403
Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNH 548
V Y P TYN ++ A C D A ++N++ + G SP
Sbjct: 404 ----RMVSRGCY----------PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL 449
Query: 549 ISWTILIDACGGSGNVEGALQ 569
I++ +ID +G A++
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIK 470
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 25/241 (10%)
Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
G + D+ +YN+++ C AG EI + L+ V DV TY+TI++ D+
Sbjct: 167 GAVPDVITYNVMISGYCKAG------EINNALSVLDRMSV-SPDVVTYNTILRSLCDSGK 219
Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437
+ A++V + ML P+ IT++ LI A C ++G V AM L +EM GC P+ N
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG-VGHAMKLLDEMRDRGCTPDVVTYN 278
Query: 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK-DKQSITNTPNF 496
+L+ + + D A + S Q + + H +S+ +T +
Sbjct: 279 VLVNGICKEGRLDEAIKFLNDMPSSGCQPNV-------------ITHNIILRSMCSTGRW 325
Query: 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTIL 554
+ + R F P+ T+NIL+ C +A ++ +M G PN +S+ L
Sbjct: 326 MDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPL 385
Query: 555 I 555
+
Sbjct: 386 L 386
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 106/229 (46%), Gaps = 16/229 (6%)
Query: 235 RDLVSALRAYDASK------KHLSSPNMYICRTIIDVCGICGDYMKSRAI--YEDLRSQN 286
R + S R DA K + SP++ +I+ +C + RAI E +
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINF--LCRKGLLGRAIDILEKMPQHG 374
Query: 287 VTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344
N +N L++ + K +E + M G D+ +YN +L A C G A
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434
Query: 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404
EI + L +KG + + TY+T++ A A A+K+ ++M + + P+TIT+SSL
Sbjct: 435 EI---LNQLSSKGCSPV-LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSL 490
Query: 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
+ + G V++A+ F E + G PN+ N ++ ++ Q DRA
Sbjct: 491 VGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAI 539
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/335 (19%), Positives = 136/335 (40%), Gaps = 63/335 (18%)
Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
+ +++R + T ++ +N L+N L ++ +M G ++ ++NI+L++ C
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMC 320
Query: 336 LAGNTVLAQEIYGE----------------VKHLEAKGVL--KLDVF------------- 364
G + A+++ + + L KG+L +D+
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380
Query: 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
+Y+ ++ F K A++ E M+S G P+ +T+++++ A G VE A+ + ++
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440
Query: 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLF--------RSWTLSKTQVALGEDYDGNT 476
GC P N ++ +A + +A +L + T++ + + G +G
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500
Query: 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL- 535
D H+ F+ R +P T+N +M C +A+
Sbjct: 501 DEAIKFFHE-------------------FE-RMGIRPNAVTFNSIMLGLCKSRQTDRAID 540
Query: 536 -MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
+ M G PN S+TILI+ G + AL+
Sbjct: 541 FLVFMINRGCKPNETSYTILIEGLAYEGMAKEALE 575
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 8/180 (4%)
Query: 267 GICGDYMKSRAI--YEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMA 322
G C + RAI E + S+ +I +N+++ D K +E+ + G
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP 447
Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
+ +YN ++ AG T A ++ E++ + LK D TYS++V + A
Sbjct: 448 VLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD----LKPDTITYSSLVGGLSREGKVDEA 503
Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
+K + G+ PN +T++S++ + ++A+ M+ GC+PN IL++
Sbjct: 504 IKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEG 563
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 79/190 (41%), Gaps = 17/190 (8%)
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
K E+M+ G P+ I ++LI G +A + E + +G P+ N+++
Sbjct: 121 GFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMIS 180
Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
+A + + A + ++S V D K KQ++ +
Sbjct: 181 GYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCD-----SGKLKQAMEVLDRMLQRDC 235
Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACG 559
Y P TY IL++A C D A L++EMR G +P+ +++ +L++
Sbjct: 236 Y----------PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285
Query: 560 GSGNVEGALQ 569
G ++ A++
Sbjct: 286 KEGRLDEAIK 295
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 121/277 (43%), Gaps = 38/277 (13%)
Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
Y++M G++ D +Y +L+ A+EI+ E++ KG+ DVF+Y ++
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMR---GKGIAP-DVFSYGVLIN 635
Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
F+ Q A + ++M+ G+TPN I ++ L+ +G +E+A L +EM G P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695
Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD---RISNMEH---- 484
N+ ++ ++ AFRLF L K V Y D R++++E
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEMKL-KGLVPDSFVYTTLVDGCCRLNDVERAITI 754
Query: 485 -----KDKQSITNTPNFVPNSHY-----------------SSFDKRFSFKPTTTTYNILM 522
K S T N + N + SFD RF KP TYNI++
Sbjct: 755 FGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFD-RFG-KPNDVTYNIMI 812
Query: 523 KACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDA 557
C + K L ++M+ L P I++T L++
Sbjct: 813 DYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG 849
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 135/316 (42%), Gaps = 32/316 (10%)
Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGV 320
V G+C GD + I +++ + N+ ++ +L+ + +F + V K M++ G+
Sbjct: 424 VKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGI 483
Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
D+ YN L+ A A+ E+ + LK + FTY + + +A +
Sbjct: 484 APDIFCYNSLIIGLSKAKRMDEARSFLVEM----VENGLKPNAFTYGAFISGYIEASEFA 539
Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
A K ++M GV PN + + LIN G V +A + M+ G +++ +L+
Sbjct: 540 SADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLM 599
Query: 441 QACVEACQFDRA---FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497
+ + D A FR R ++ + G +G + ++ NM+
Sbjct: 600 NGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFS-KLGNMQKAS----------- 647
Query: 498 PNSHYSSFDKRF--SFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTI 553
S FD+ P YN+L+ C + + K L++EM GL PN +++
Sbjct: 648 -----SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCT 702
Query: 554 LIDACGGSGNVEGALQ 569
+ID SG++ A +
Sbjct: 703 IIDGYCKSGDLAEAFR 718
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 142/321 (44%), Gaps = 28/321 (8%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEV 311
P MY C I V G K++A+++ + + + + SL+ +++ E+
Sbjct: 347 PYMYDC--CICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYEL 404
Query: 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371
M+K ++ +Y ++K C +G+ A Y VK + A G + +V Y+T++K
Sbjct: 405 LVEMKKRNIVISPYTYGTVVKGMCSSGDLDGA---YNIVKEMIASGC-RPNVVIYTTLIK 460
Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
F + A++V ++M G+ P+ ++SLI + A +++A EM++ G +P
Sbjct: 461 TFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKP 520
Query: 432 NSQCCNILLQACVEACQF---DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
N+ + +EA +F D+ + R + +V T I+ E+ K
Sbjct: 521 NAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLC-------TGLIN--EYCKKG 571
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSP 546
+ +++ S D+ TY +LM + + + EMR G++P
Sbjct: 572 KVIEA----CSAYRSMVDQ--GILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625
Query: 547 NHISWTILIDACGGSGNVEGA 567
+ S+ +LI+ GN++ A
Sbjct: 626 DVFSYGVLINGFSKLGNMQKA 646
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 109/247 (44%), Gaps = 19/247 (7%)
Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
P A + +C + + K DL A R +D K P+ ++ T++D C D ++
Sbjct: 695 PNA-VTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAIT 753
Query: 278 IYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNM-----QKLGVMADMASYNIL 330
I+ + + FN+L+N + EV + + G D+ +YNI+
Sbjct: 754 IF-GTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDV-TYNIM 811
Query: 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390
+ C GN A+E++ ++++ L V TY++++ + V ++ +
Sbjct: 812 IDYLCKEGNLEAAKELFHQMQNAN----LMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI 867
Query: 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-----GCEPNSQCCNILLQACVE 445
+AG+ P+ I +S +INA G+ +A+ L ++M GC+ + C LL +
Sbjct: 868 AAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAK 927
Query: 446 ACQFDRA 452
+ + A
Sbjct: 928 VGEMEVA 934
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 20/160 (12%)
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
+ ++L+ N DL + +VYK M + V+ D+ +Y++L+ A C AGN L +++ + +
Sbjct: 192 LLDALLRWNRLDLFW--DVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEK 249
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
L +D ALK+KE M+ G+ P T+ LI+
Sbjct: 250 EFRTATLNVD------------------GALKLKESMICKGLVPLKYTYDVLIDGLCKIK 291
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
+E A L EM G ++ ++L+ ++ D A
Sbjct: 292 RLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 14/190 (7%)
Query: 226 NFVREFGKKRDLVSAL-RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284
N+V +FGK L R D S PN +ID G+ ++ ++ +++
Sbjct: 774 NWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833
Query: 285 QNVTLNIYVFNSLMNVNAHD----LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
N+ + + SL+N +D V+ G+ D Y++++ A G T
Sbjct: 834 ANLMPTVITYTSLLN--GYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMT 891
Query: 341 VLAQEIYGEVKHLEAKGVL----KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
A + V + AK + KL + T ++ FA ++A KV E+M+ P
Sbjct: 892 TKALVL---VDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIP 948
Query: 397 NTITWSSLIN 406
++ T LIN
Sbjct: 949 DSATVIELIN 958
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 108/235 (45%), Gaps = 7/235 (2%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
+ +C + K L A+ Y ++ SP+ + II+ G G + ++ +
Sbjct: 430 VTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCE 489
Query: 282 LRSQNVTLNIYVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+ Q T N+ FN + ++ A + + L++Y++MQ G D +Y+I+++ + G+
Sbjct: 490 MVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVME---VLGH 546
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
+E G ++ K + D Y +V ++ A A + + ML AG+ PN
Sbjct: 547 CGFLEEAEGVFAEMQRKNWVP-DEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVP 605
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-CQFDRAF 453
T +SL++ + +A +L + ML G P+ Q +LL C +A FD F
Sbjct: 606 TCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDMGF 660
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 113/250 (45%), Gaps = 12/250 (4%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
+ + + +G+ L A+ ++ ++ P+ T+ID+ G + +Y+
Sbjct: 395 VTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQR 454
Query: 282 LRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339
++ ++ + + ++ ++N A L ++ M G ++ ++NI++ A N
Sbjct: 455 MQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARN 514
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
A ++Y ++++ + D TYS +++V + + A V +M P+
Sbjct: 515 YETALKLYRDMQN----AGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEP 570
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
+ L++ AG V++A ++ MLQAG PN CN LL F R R+ ++
Sbjct: 571 VYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLST------FLRVHRMSEAY 624
Query: 460 TLSKTQVALG 469
L ++ +ALG
Sbjct: 625 NLLQSMLALG 634
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/237 (18%), Positives = 112/237 (47%), Gaps = 6/237 (2%)
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
+ V G+ + + D + PN +I G ++ ++ ++
Sbjct: 362 YTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQ 421
Query: 284 SQNVTLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
+ + +L++++A L +++Y+ MQ+ G+ D +Y++++ AG+
Sbjct: 422 EAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLP 481
Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
A ++ E + +G ++ T++ ++ + A A+ ++ ALK+ DM +AG P+ +T+
Sbjct: 482 AAHRLFCE---MVGQGCTP-NLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTY 537
Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
S ++ + G +E+A +F EM + P+ +L+ +A D+A++ +++
Sbjct: 538 SIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQA 594
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 38/287 (13%)
Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQ-----EIYGEVKHLEAKGVLKLDVFTYSTIVK 371
K G A+ A +N + N VL Q G L+ + K D TY+T+V
Sbjct: 308 KWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVG 367
Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
AK + K+ ++M+ G PNT+T++ LI++ A +++AM++F +M +AGCEP
Sbjct: 368 NLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEP 427
Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491
+ L+ +A D A +++ + L D + I+ +
Sbjct: 428 DRVTYCTLIDIHAKAGFLDIAMDMYQ----RMQEAGLSPDTFTYSVIINCLGKAGHLPAA 483
Query: 492 N-----------TPNFV----------PNSHYSSFDKRF------SFKPTTTTYNILMK- 523
+ TPN V +Y + K + F+P TY+I+M+
Sbjct: 484 HRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEV 543
Query: 524 -ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
C + + EM+ P+ + +L+D G +GNV+ A Q
Sbjct: 544 LGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQ 590
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 36/339 (10%)
Query: 262 IIDVCGIC-GDYMKSRAIYEDLRSQ-NVTLNIYVFNSL-MNVNAHDLKFTLEV-YKNMQK 317
+I C C + +K +++LR LN ++SL M++ DL F V Y+ M+
Sbjct: 129 LIKECSRCEKEMLKLMYCFDELREVFGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEA 188
Query: 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377
G + M Y ++ A C G T A+ ++ + LD ++++ F
Sbjct: 189 DGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIG----FVLDSHIGTSLLLGFCRGL 244
Query: 378 WWQMALKVKEDMLSAGVT--PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
+ ALKV D++S VT PN++++S LI+ G +E+A L ++M + GC+P+++
Sbjct: 245 NLRDALKVF-DVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRT 303
Query: 436 CNILLQACVEACQFDRAFRLF--------RSWTLSKTQVALGEDYDGNTDRISNMEH--- 484
+L++A + D+AF LF + + T + G DG + + +
Sbjct: 304 YTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMV 363
Query: 485 KDK------------QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYY 530
KD+ VP + ++ + KP T+N LM+ C Y
Sbjct: 364 KDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPY 423
Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
+ L+ M GLSP+ +S+ +LID G++ A +
Sbjct: 424 KAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYK 462
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 113/288 (39%), Gaps = 28/288 (9%)
Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
N+ FN LM + + K M G+ D+ SYN+L+ C G+ A ++
Sbjct: 405 NVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLL 464
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
+ + ++ D T++ I+ F +A ML G++ + +T ++LI+
Sbjct: 465 SSMNCFD----IEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDG 520
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKT 464
G A+ + E +++ N++L + C+ + L +
Sbjct: 521 VCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPS 580
Query: 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
V DG + + + + K P Y I++
Sbjct: 581 VVTYTTLVDG---------------LIRSGDITGSFRILELMKLSGCLPNVYPYTIIING 625
Query: 525 CCTDYYRVK---ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
C + RV+ L++ M+ G+SPNH+++T+++ +G ++ AL+
Sbjct: 626 LC-QFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALE 672
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 89/193 (46%), Gaps = 20/193 (10%)
Query: 261 TIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQ 316
T+ID G+C G + I E L + + N ++++ +K L + +
Sbjct: 516 TLID--GVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKIN 573
Query: 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-----DVFTYSTIVK 371
KLG++ + +Y L+ +G +I G + LE ++KL +V+ Y+ I+
Sbjct: 574 KLGLVPSVVTYTTLVDGLIRSG------DITGSFRILE---LMKLSGCLPNVYPYTIIIN 624
Query: 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
+ A K+ M +GV+PN +T++ ++ N G +++A+ M++ G E
Sbjct: 625 GLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYEL 684
Query: 432 NSQCCNILLQACV 444
N + + LLQ V
Sbjct: 685 NDRIYSSLLQGFV 697
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/337 (18%), Positives = 131/337 (38%), Gaps = 61/337 (18%)
Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSL 297
A +D PN++ +ID G+C G ++ + + + ++ +N+L
Sbjct: 320 AFNLFDEMIPRGCKPNVHTYTVLID--GLCRDGKIEEANGVCRKMVKDRIFPSVITYNAL 377
Query: 298 MNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355
+N D + E+ M+K ++ ++N L++ C G A + +K +
Sbjct: 378 INGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHL---LKRMLD 434
Query: 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415
G L D+ +Y+ ++ A K+ M + P+ +T++++INA G +
Sbjct: 435 NG-LSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKAD 493
Query: 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475
A ML+ G + L+ C+ + KT+
Sbjct: 494 VASAFLGLMLRKGISLDEVTGTTLIDG---VCK------------VGKTR---------- 528
Query: 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK-- 533
D + +E K I TP+ ++L K C +VK
Sbjct: 529 -DALFILETLVKMRILTTPH-----------------SLNVILDMLSKGC-----KVKEE 565
Query: 534 -ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
A++ ++ +GL P+ +++T L+D SG++ G+ +
Sbjct: 566 LAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFR 602
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%)
Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
V TY+T+V + + ++ E M +G PN ++ +IN G VE+A L
Sbjct: 581 VVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLS 640
Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458
M +G PN ++++ V + DRA R+
Sbjct: 641 AMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRA 676
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 142/337 (42%), Gaps = 26/337 (7%)
Query: 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299
AL D + P++ T+++ + G ++ + + + N + ++N
Sbjct: 177 ALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLN 236
Query: 300 V--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357
V + +E+ + M++ + D Y+I++ C G+ A ++ E +E KG
Sbjct: 237 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE---MEMKG 293
Query: 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417
+ ++ TY+ ++ F +A W K+ DM+ + PN +T+S LI++ G + +A
Sbjct: 294 ITT-NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREA 352
Query: 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477
L +EM+ G P++ L+ + D+A ++ V+ G D + T
Sbjct: 353 EELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV------DLMVSKGCDPNIRTF 406
Query: 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT---TTTYNILMKACCT--DYYRV 532
I + I + ++ S + T TYN L++ C
Sbjct: 407 NILINGYCKANRIDDGLELF---------RKMSLRGVVADTVTYNTLIQGFCELGKLNVA 457
Query: 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
K L EM + + PN +++ IL+D +G E AL+
Sbjct: 458 KELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALE 494
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/350 (20%), Positives = 145/350 (41%), Gaps = 62/350 (17%)
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
FCN G+ D LR D K+ ++ PN+ +ID G ++ +++++
Sbjct: 308 FCNA----GRWDDGAKLLR--DMIKRKIN-PNVVTFSVLIDSFVKEGKLREAEELHKEMI 360
Query: 284 SQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341
+ + + + SL++ + L ++ M G ++ ++NIL+ C A
Sbjct: 361 HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRID 420
Query: 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401
E++ + + +GV+ D TY+T+++ F + +A ++ ++M+S V PN +T+
Sbjct: 421 DGLELF---RKMSLRGVVA-DTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 476
Query: 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461
L++ + G E+A+ +FE++ ++ E + NI++ A + D A+ LF S L
Sbjct: 477 KILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 536
Query: 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521
KP TYNI+
Sbjct: 537 K-----------------------------------------------GVKPGVKTYNIM 549
Query: 522 MKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
+ C + L +M G +P+ ++ ILI A G G+ +++
Sbjct: 550 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVK 599
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 26/242 (10%)
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
K +E KG+ +++T S ++ F + +A ++ G PNTIT+S+LIN
Sbjct: 112 KQMELKGIAH-NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCL 170
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR---SWTLSKTQVA 467
G V +A+ L + M++ G +P+ N L+ + + A L + V
Sbjct: 171 EGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT 230
Query: 468 LGEDYD-----GNT----DRISNMEHKDKQSITNTPNFVPNS--HYSSFDKRFSF----- 511
G + G T + + ME ++ + + + + + S D F+
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME 290
Query: 512 -KPTTT---TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565
K TT TYNIL+ C + L+ +M ++PN +++++LID+ G +
Sbjct: 291 MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLR 350
Query: 566 GA 567
A
Sbjct: 351 EA 352
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 32/218 (14%)
Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
V +S + A K + + L + + M G+ N T S +IN + A
Sbjct: 88 VIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMG 147
Query: 423 EMLQAGCEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481
++++ G EPN+ + L+ C+E + A L DR+
Sbjct: 148 KIIKLGYEPNTITFSTLINGLCLEG-RVSEALEL--------------------VDRMVE 186
Query: 482 MEHK-DKQSITNTPNFVPNSHYSS-----FDKRFSF--KPTTTTYNILMKACCTDYYRVK 533
M HK D +I N + S + DK + +P TY ++ C
Sbjct: 187 MGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTAL 246
Query: 534 A--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
A L+ +M + + + ++I+ID G+++ A
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFN 284
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,239,904
Number of Sequences: 539616
Number of extensions: 7797416
Number of successful extensions: 26538
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 20938
Number of HSP's gapped (non-prelim): 3144
length of query: 572
length of database: 191,569,459
effective HSP length: 123
effective length of query: 449
effective length of database: 125,196,691
effective search space: 56213314259
effective search space used: 56213314259
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)