Query 008265
Match_columns 572
No_of_seqs 448 out of 3524
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 21:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.9E-60 6.3E-65 501.9 55.1 487 69-570 368-902 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1E-59 2.2E-64 497.9 52.2 450 69-549 435-916 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.7E-58 3.8E-63 486.6 44.2 453 71-571 87-551 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 2E-57 4.4E-62 489.9 45.1 473 70-570 50-647 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 3.2E-56 6.8E-61 480.7 44.6 466 67-569 148-678 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1E-52 2.2E-57 442.8 46.6 429 69-545 121-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 9.8E-23 2.1E-27 225.3 51.4 465 59-570 420-893 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 9.7E-22 2.1E-26 217.4 51.0 466 59-570 386-859 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.2E-19 4.7E-24 178.0 33.3 282 222-566 70-365 (389)
10 PRK11788 tetratricopeptide rep 99.8 7.2E-18 1.6E-22 167.1 34.5 297 123-467 45-352 (389)
11 KOG4626 O-linked N-acetylgluco 99.8 1E-17 2.2E-22 158.6 32.5 367 61-461 107-484 (966)
12 PRK11447 cellulose synthase su 99.8 2.3E-15 4.9E-20 167.6 47.4 418 78-570 276-733 (1157)
13 PRK11447 cellulose synthase su 99.8 8.5E-15 1.9E-19 163.1 48.7 377 59-461 292-699 (1157)
14 PRK15174 Vi polysaccharide exp 99.8 4.8E-15 1E-19 154.3 43.3 356 81-463 15-382 (656)
15 TIGR00990 3a0801s09 mitochondr 99.8 4.4E-14 9.6E-19 147.6 49.0 393 73-542 129-571 (615)
16 PRK15174 Vi polysaccharide exp 99.8 2.1E-14 4.5E-19 149.6 42.9 287 165-461 52-346 (656)
17 KOG4626 O-linked N-acetylgluco 99.8 8E-15 1.7E-19 139.3 34.6 379 59-462 37-451 (966)
18 PRK10049 pgaA outer membrane p 99.7 3.4E-13 7.3E-18 143.7 47.5 411 72-558 16-470 (765)
19 KOG4422 Uncharacterized conser 99.7 5.5E-14 1.2E-18 127.9 34.4 320 123-464 125-464 (625)
20 TIGR00990 3a0801s09 mitochondr 99.7 1.1E-13 2.3E-18 144.8 41.7 390 118-570 132-564 (615)
21 PRK10049 pgaA outer membrane p 99.7 2.2E-13 4.7E-18 145.1 44.1 377 66-464 45-458 (765)
22 PRK14574 hmsH outer membrane p 99.7 1.2E-11 2.6E-16 129.5 46.1 423 73-570 37-506 (822)
23 PRK09782 bacteriophage N4 rece 99.6 2.5E-11 5.4E-16 129.8 45.6 171 59-249 67-275 (987)
24 KOG4422 Uncharacterized conser 99.6 3.6E-11 7.8E-16 109.9 35.4 342 73-447 118-482 (625)
25 PRK09782 bacteriophage N4 rece 99.6 3.2E-10 7E-15 121.4 44.6 354 74-462 316-706 (987)
26 PRK14574 hmsH outer membrane p 99.6 2.7E-10 5.8E-15 119.5 42.9 365 78-463 109-514 (822)
27 KOG2002 TPR-containing nuclear 99.5 2.2E-10 4.7E-15 115.5 38.4 369 71-462 270-675 (1018)
28 TIGR00540 hemY_coli hemY prote 99.5 5.7E-11 1.2E-15 117.4 32.4 283 167-460 96-397 (409)
29 KOG2076 RNA polymerase III tra 99.5 4.4E-09 9.5E-14 105.5 43.5 368 71-462 139-555 (895)
30 KOG2003 TPR repeat-containing 99.5 4E-10 8.7E-15 103.9 33.1 381 113-564 276-710 (840)
31 KOG2003 TPR repeat-containing 99.5 3.6E-10 7.7E-15 104.2 32.6 373 71-462 276-689 (840)
32 PRK10747 putative protoheme IX 99.5 1.6E-10 3.5E-15 113.6 32.6 278 168-460 97-388 (398)
33 PRK10747 putative protoheme IX 99.5 1.6E-10 3.5E-15 113.5 31.1 280 125-426 96-389 (398)
34 COG2956 Predicted N-acetylgluc 99.5 3.4E-10 7.4E-15 100.1 28.5 292 151-464 39-349 (389)
35 PF13429 TPR_15: Tetratricopep 99.5 1.5E-12 3.3E-17 122.1 15.0 227 222-460 45-275 (280)
36 KOG2002 TPR-containing nuclear 99.4 3E-09 6.5E-14 107.5 38.1 367 71-461 307-708 (1018)
37 COG2956 Predicted N-acetylgluc 99.4 7.2E-10 1.6E-14 98.1 29.1 289 84-426 48-346 (389)
38 TIGR00540 hemY_coli hemY prote 99.4 7.4E-10 1.6E-14 109.6 30.8 58 365-424 337-396 (409)
39 KOG1126 DNA-binding cell divis 99.4 7.7E-11 1.7E-15 114.1 21.3 273 235-569 333-612 (638)
40 KOG1126 DNA-binding cell divis 99.4 4E-10 8.6E-15 109.3 26.0 278 168-464 332-622 (638)
41 KOG0495 HAT repeat protein [RN 99.4 9.9E-08 2.2E-12 92.5 41.7 454 59-566 399-869 (913)
42 KOG1155 Anaphase-promoting com 99.4 3.2E-08 7E-13 92.1 36.4 279 166-462 175-461 (559)
43 PF13429 TPR_15: Tetratricopep 99.4 7.2E-12 1.6E-16 117.6 13.2 226 227-461 14-242 (280)
44 COG3071 HemY Uncharacterized e 99.4 3E-09 6.5E-14 97.2 29.1 281 125-426 96-389 (400)
45 PF13041 PPR_2: PPR repeat fam 99.3 3.7E-12 7.9E-17 83.7 6.2 49 396-444 1-49 (50)
46 PF13041 PPR_2: PPR repeat fam 99.3 3.8E-12 8.2E-17 83.6 6.0 50 361-410 1-50 (50)
47 KOG2076 RNA polymerase III tra 99.3 3.1E-08 6.8E-13 99.6 35.4 290 168-461 152-477 (895)
48 COG3071 HemY Uncharacterized e 99.3 3.9E-07 8.4E-12 83.7 37.2 277 168-460 97-388 (400)
49 KOG1155 Anaphase-promoting com 99.3 1.1E-07 2.4E-12 88.6 33.1 252 197-461 233-494 (559)
50 KOG0547 Translocase of outer m 99.2 7E-08 1.5E-12 90.5 31.1 315 122-462 124-491 (606)
51 KOG0547 Translocase of outer m 99.2 3.1E-07 6.7E-12 86.3 33.5 220 230-460 335-564 (606)
52 KOG4318 Bicoid mRNA stability 99.2 2.7E-09 5.9E-14 106.5 18.9 207 242-465 11-236 (1088)
53 TIGR02521 type_IV_pilW type IV 99.1 6E-08 1.3E-12 88.5 26.8 199 222-460 32-230 (234)
54 PRK12370 invasion protein regu 99.1 5.8E-08 1.3E-12 99.9 28.0 257 168-463 274-536 (553)
55 TIGR02521 type_IV_pilW type IV 99.1 1E-07 2.2E-12 87.0 26.3 197 191-426 31-231 (234)
56 KOG1840 Kinesin light chain [C 99.1 5.2E-08 1.1E-12 95.7 24.5 270 67-390 196-477 (508)
57 PRK12370 invasion protein regu 99.1 1.2E-07 2.6E-12 97.7 28.7 212 235-461 275-501 (553)
58 KOG0495 HAT repeat protein [RN 99.1 1.7E-05 3.6E-10 77.6 42.4 370 123-568 386-773 (913)
59 KOG2376 Signal recognition par 99.1 3.3E-06 7.2E-11 81.4 35.4 388 75-539 16-517 (652)
60 KOG4318 Bicoid mRNA stability 99.1 9.8E-09 2.1E-13 102.6 19.3 253 134-412 11-285 (1088)
61 KOG3785 Uncharacterized conser 99.1 4.3E-06 9.4E-11 75.5 32.8 347 78-460 29-420 (557)
62 KOG1915 Cell cycle control pro 99.0 1.1E-05 2.5E-10 75.7 35.9 322 123-465 83-469 (677)
63 KOG1840 Kinesin light chain [C 99.0 2E-07 4.2E-12 91.7 25.7 261 113-425 199-477 (508)
64 KOG1915 Cell cycle control pro 99.0 2.2E-05 4.8E-10 73.8 36.0 318 125-463 153-537 (677)
65 KOG2047 mRNA splicing factor [ 99.0 3.3E-05 7.1E-10 75.5 37.3 408 71-548 102-584 (835)
66 KOG1129 TPR repeat-containing 99.0 3.3E-07 7.2E-12 81.6 21.6 193 194-392 259-458 (478)
67 PF12569 NARP1: NMDA receptor- 99.0 1.7E-06 3.8E-11 86.2 29.3 283 166-462 15-334 (517)
68 PF12569 NARP1: NMDA receptor- 98.9 2.7E-06 5.9E-11 84.8 29.3 285 121-426 12-333 (517)
69 KOG1129 TPR repeat-containing 98.9 2.8E-07 6E-12 82.1 18.1 225 226-461 228-457 (478)
70 KOG1173 Anaphase-promoting com 98.9 1.1E-05 2.5E-10 77.5 29.4 280 157-444 246-533 (611)
71 cd05804 StaR_like StaR_like; a 98.8 3E-05 6.6E-10 75.8 31.4 201 71-285 6-215 (355)
72 PRK11189 lipoprotein NlpI; Pro 98.8 8.2E-06 1.8E-10 76.9 25.3 63 222-285 99-161 (296)
73 KOG1173 Anaphase-promoting com 98.7 1.7E-05 3.8E-10 76.3 26.6 273 113-408 244-532 (611)
74 KOG3785 Uncharacterized conser 98.7 6.5E-05 1.4E-09 68.1 28.4 218 235-467 268-495 (557)
75 PRK11189 lipoprotein NlpI; Pro 98.7 1.5E-05 3.3E-10 75.0 26.3 203 222-438 65-275 (296)
76 KOG1156 N-terminal acetyltrans 98.7 0.00036 7.8E-09 68.6 36.6 368 71-464 75-470 (700)
77 KOG1174 Anaphase-promoting com 98.7 0.00025 5.4E-09 65.9 33.4 233 217-460 228-465 (564)
78 PF12854 PPR_1: PPR repeat 98.7 2E-08 4.3E-13 59.0 3.9 30 429-458 3-32 (34)
79 PF12854 PPR_1: PPR repeat 98.7 2.5E-08 5.4E-13 58.6 4.3 34 392-425 1-34 (34)
80 PF04733 Coatomer_E: Coatomer 98.7 1E-06 2.3E-11 81.6 17.1 224 223-465 37-268 (290)
81 KOG2376 Signal recognition par 98.7 0.00049 1.1E-08 67.0 33.9 117 164-286 21-140 (652)
82 KOG1156 N-terminal acetyltrans 98.6 0.00052 1.1E-08 67.6 33.7 380 59-461 98-510 (700)
83 KOG4340 Uncharacterized conser 98.6 0.00016 3.6E-09 64.0 27.1 288 73-388 12-335 (459)
84 PRK04841 transcriptional regul 98.6 0.00021 4.6E-09 79.4 35.4 338 119-463 380-761 (903)
85 KOG1914 mRNA cleavage and poly 98.6 0.00072 1.6E-08 65.2 35.7 121 60-198 10-135 (656)
86 KOG3617 WD40 and TPR repeat-co 98.6 0.00065 1.4E-08 68.6 32.9 318 70-423 756-1170(1416)
87 COG3063 PilF Tfp pilus assembl 98.6 4.2E-05 9.2E-10 65.4 21.4 199 71-317 35-235 (250)
88 KOG1174 Anaphase-promoting com 98.6 0.00065 1.4E-08 63.2 37.5 359 76-461 48-432 (564)
89 KOG4162 Predicted calmodulin-b 98.6 0.0013 2.8E-08 66.2 36.1 373 70-463 322-784 (799)
90 KOG4340 Uncharacterized conser 98.6 9.7E-05 2.1E-09 65.5 24.0 295 71-390 44-373 (459)
91 cd05804 StaR_like StaR_like; a 98.5 0.00034 7.4E-09 68.4 30.8 227 228-462 50-293 (355)
92 PF04733 Coatomer_E: Coatomer 98.5 8.8E-06 1.9E-10 75.5 18.2 147 199-351 110-263 (290)
93 KOG2047 mRNA splicing factor [ 98.5 0.0014 3E-08 64.6 35.1 328 116-463 105-507 (835)
94 COG3063 PilF Tfp pilus assembl 98.5 0.00015 3.2E-09 62.1 23.3 199 222-460 36-234 (250)
95 KOG0624 dsRNA-activated protei 98.5 0.00074 1.6E-08 61.3 28.7 330 71-463 38-371 (504)
96 KOG3616 Selective LIM binding 98.5 0.00039 8.4E-09 69.2 29.0 240 197-459 595-850 (1636)
97 KOG0985 Vesicle coat protein c 98.5 0.0021 4.5E-08 66.6 34.8 217 204-458 1088-1304(1666)
98 KOG3617 WD40 and TPR repeat-co 98.4 0.0012 2.7E-08 66.7 30.2 324 80-461 737-1108(1416)
99 KOG1128 Uncharacterized conser 98.4 9.6E-05 2.1E-09 73.5 22.5 212 224-461 401-615 (777)
100 PRK04841 transcriptional regul 98.4 0.0032 6.9E-08 70.1 36.3 331 121-461 349-719 (903)
101 KOG1128 Uncharacterized conser 98.3 5E-05 1.1E-09 75.5 18.6 230 195-444 402-634 (777)
102 PRK15179 Vi polysaccharide bio 98.3 0.00033 7.2E-09 73.0 24.9 134 321-462 83-217 (694)
103 KOG1070 rRNA processing protei 98.3 0.00056 1.2E-08 73.0 25.4 231 212-453 1449-1691(1710)
104 KOG3081 Vesicle coat complex C 98.3 0.0021 4.6E-08 56.5 24.7 153 301-468 120-277 (299)
105 PRK10370 formate-dependent nit 98.3 0.0004 8.6E-09 60.9 20.9 126 303-436 53-181 (198)
106 TIGR03302 OM_YfiO outer membra 98.3 0.00029 6.3E-09 64.2 21.1 192 70-285 32-232 (235)
107 KOG1070 rRNA processing protei 98.2 0.0011 2.4E-08 71.0 26.8 198 257-464 1459-1665(1710)
108 KOG1125 TPR repeat-containing 98.2 0.00014 2.9E-09 70.6 18.6 248 198-457 292-566 (579)
109 TIGR00756 PPR pentatricopeptid 98.2 4.2E-06 9.2E-11 50.0 4.7 33 400-432 2-34 (35)
110 PLN02789 farnesyltranstransfer 98.2 0.0038 8.3E-08 59.0 26.5 229 222-460 38-300 (320)
111 KOG1127 TPR repeat-containing 98.1 0.0018 3.8E-08 67.1 25.3 375 59-458 481-909 (1238)
112 TIGR03302 OM_YfiO outer membra 98.1 0.00071 1.5E-08 61.7 21.1 182 255-462 32-232 (235)
113 KOG3616 Selective LIM binding 98.1 0.0015 3.1E-08 65.3 23.4 219 198-458 739-962 (1636)
114 COG5010 TadD Flp pilus assembl 98.1 0.00097 2.1E-08 58.5 19.6 116 303-425 114-229 (257)
115 TIGR00756 PPR pentatricopeptid 98.1 5.8E-06 1.3E-10 49.3 4.4 33 258-290 2-34 (35)
116 PF13812 PPR_3: Pentatricopept 98.1 6.4E-06 1.4E-10 48.8 4.4 33 257-289 2-34 (34)
117 KOG0985 Vesicle coat protein c 98.1 0.0089 1.9E-07 62.2 28.8 318 72-452 937-1268(1666)
118 KOG3060 Uncharacterized conser 98.1 0.0021 4.7E-08 56.0 21.1 149 84-248 25-181 (289)
119 PF13812 PPR_3: Pentatricopept 98.1 6.8E-06 1.5E-10 48.6 4.4 32 400-431 3-34 (34)
120 PLN02789 farnesyltranstransfer 98.1 0.0062 1.3E-07 57.6 25.8 193 258-460 39-248 (320)
121 KOG0548 Molecular co-chaperone 98.0 0.014 3E-07 56.7 27.7 289 167-461 14-420 (539)
122 COG5010 TadD Flp pilus assembl 98.0 0.00056 1.2E-08 60.0 16.6 148 303-458 80-227 (257)
123 KOG1125 TPR repeat-containing 98.0 0.00056 1.2E-08 66.5 18.2 247 164-421 294-565 (579)
124 PRK15359 type III secretion sy 98.0 0.00032 6.9E-09 58.0 14.7 92 368-461 29-120 (144)
125 KOG0624 dsRNA-activated protei 98.0 0.0066 1.4E-07 55.3 23.5 293 59-392 61-370 (504)
126 PRK15359 type III secretion sy 98.0 0.00049 1.1E-08 56.9 15.3 108 310-427 14-121 (144)
127 PRK14720 transcript cleavage f 98.0 0.0023 5E-08 67.7 23.3 134 167-317 43-177 (906)
128 PRK15179 Vi polysaccharide bio 98.0 0.0014 3.1E-08 68.4 21.7 126 169-298 100-229 (694)
129 TIGR02552 LcrH_SycD type III s 97.9 0.00094 2E-08 54.7 15.8 106 324-437 17-122 (135)
130 PRK14720 transcript cleavage f 97.9 0.0073 1.6E-07 64.1 25.4 215 222-463 32-253 (906)
131 COG4783 Putative Zn-dependent 97.9 0.0058 1.3E-07 58.6 22.3 110 303-420 320-430 (484)
132 PRK10370 formate-dependent nit 97.9 0.00059 1.3E-08 59.8 15.0 120 337-463 52-174 (198)
133 PF10037 MRP-S27: Mitochondria 97.9 0.00019 4.2E-09 69.3 12.8 127 318-446 60-186 (429)
134 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0013 2.9E-08 63.4 17.8 122 260-390 173-295 (395)
135 KOG4162 Predicted calmodulin-b 97.9 0.043 9.4E-07 55.8 39.6 185 166-352 334-541 (799)
136 PF08579 RPM2: Mitochondrial r 97.9 0.00026 5.7E-09 53.3 10.1 73 263-335 32-115 (120)
137 PF08579 RPM2: Mitochondrial r 97.9 0.00037 8.1E-09 52.5 10.8 79 367-445 29-116 (120)
138 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00097 2.1E-08 64.3 16.6 128 323-460 168-295 (395)
139 KOG0548 Molecular co-chaperone 97.8 0.039 8.4E-07 53.7 30.6 358 79-463 10-456 (539)
140 PF01535 PPR: PPR repeat; Int 97.8 2.8E-05 6.1E-10 44.8 3.6 27 401-427 3-29 (31)
141 TIGR02552 LcrH_SycD type III s 97.8 0.0011 2.4E-08 54.3 14.5 99 362-462 16-114 (135)
142 PF01535 PPR: PPR repeat; Int 97.8 3.4E-05 7.3E-10 44.4 3.4 30 365-394 2-31 (31)
143 PF09976 TPR_21: Tetratricopep 97.8 0.0018 3.8E-08 53.8 15.0 126 325-458 13-143 (145)
144 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.042 9E-07 52.3 32.3 95 363-460 397-493 (660)
145 KOG3081 Vesicle coat complex C 97.7 0.022 4.7E-07 50.4 21.0 47 305-352 189-235 (299)
146 PF10037 MRP-S27: Mitochondria 97.7 0.0011 2.4E-08 64.1 14.0 117 346-463 50-168 (429)
147 COG4783 Putative Zn-dependent 97.6 0.014 3.1E-07 56.1 19.8 179 272-460 253-435 (484)
148 KOG2053 Mitochondrial inherita 97.6 0.13 2.9E-06 53.4 30.2 225 123-394 19-257 (932)
149 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.005 1.1E-07 48.9 13.9 101 326-428 4-106 (119)
150 KOG3060 Uncharacterized conser 97.5 0.059 1.3E-06 47.4 23.6 183 235-427 26-220 (289)
151 PF06239 ECSIT: Evolutionarily 97.5 0.0026 5.6E-08 54.5 12.2 102 360-461 44-167 (228)
152 PF09976 TPR_21: Tetratricopep 97.5 0.008 1.7E-07 49.8 15.1 14 372-385 127-140 (145)
153 KOG1914 mRNA cleavage and poly 97.4 0.14 2.9E-06 50.2 35.7 117 340-462 347-464 (656)
154 PF06239 ECSIT: Evolutionarily 97.4 0.0022 4.7E-08 55.0 11.0 114 222-352 48-167 (228)
155 cd00189 TPR Tetratricopeptide 97.4 0.0032 6.8E-08 47.4 11.4 89 369-459 6-94 (100)
156 cd00189 TPR Tetratricopeptide 97.4 0.0045 9.7E-08 46.5 11.5 95 327-427 3-97 (100)
157 PF12895 Apc3: Anaphase-promot 97.3 0.00053 1.2E-08 50.7 5.7 80 338-422 3-82 (84)
158 PF04840 Vps16_C: Vps16, C-ter 97.3 0.14 3E-06 48.4 22.9 108 326-457 179-286 (319)
159 PF05843 Suf: Suppressor of fo 97.3 0.0065 1.4E-07 56.6 14.0 130 257-392 2-136 (280)
160 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0063 1.4E-07 48.4 12.1 98 365-464 4-107 (119)
161 KOG2053 Mitochondrial inherita 97.3 0.3 6.5E-06 50.9 38.7 68 401-469 439-509 (932)
162 KOG1127 TPR repeat-containing 97.3 0.13 2.8E-06 54.1 23.0 163 221-392 492-659 (1238)
163 KOG2796 Uncharacterized conser 97.3 0.12 2.7E-06 45.6 21.1 140 222-368 178-324 (366)
164 PF05843 Suf: Suppressor of fo 97.2 0.0078 1.7E-07 56.1 13.5 130 325-461 2-135 (280)
165 PF14938 SNAP: Soluble NSF att 97.2 0.058 1.3E-06 50.5 19.2 175 70-285 34-225 (282)
166 PF14938 SNAP: Soluble NSF att 97.1 0.1 2.2E-06 48.8 19.9 207 116-351 38-264 (282)
167 PF12895 Apc3: Anaphase-promot 97.1 0.0012 2.6E-08 48.7 5.6 81 376-458 2-83 (84)
168 PRK10866 outer membrane biogen 97.1 0.17 3.7E-06 45.9 20.5 186 73-283 34-239 (243)
169 KOG2041 WD40 repeat protein [G 97.0 0.45 9.8E-06 48.2 25.9 77 197-282 828-904 (1189)
170 PLN03088 SGT1, suppressor of 97.0 0.026 5.7E-07 54.6 15.4 29 531-562 297-325 (356)
171 PLN03088 SGT1, suppressor of 97.0 0.021 4.5E-07 55.3 14.6 91 331-427 9-99 (356)
172 PF13525 YfiO: Outer membrane 97.0 0.099 2.1E-06 46.2 17.6 180 71-275 5-197 (203)
173 PF03704 BTAD: Bacterial trans 97.0 0.054 1.2E-06 44.9 15.0 109 334-461 16-124 (146)
174 PF04840 Vps16_C: Vps16, C-ter 97.0 0.34 7.4E-06 45.8 27.5 86 365-460 179-264 (319)
175 PRK15363 pathogenicity island 97.0 0.035 7.6E-07 45.5 13.0 94 327-426 38-131 (157)
176 PRK02603 photosystem I assembl 96.9 0.058 1.3E-06 46.2 15.0 86 324-413 35-121 (172)
177 KOG2280 Vacuolar assembly/sort 96.9 0.65 1.4E-05 47.6 26.3 307 118-458 442-795 (829)
178 CHL00033 ycf3 photosystem I as 96.8 0.039 8.4E-07 47.1 13.1 98 324-424 35-139 (168)
179 PRK10153 DNA-binding transcrip 96.8 0.12 2.7E-06 52.4 18.4 134 251-392 332-482 (517)
180 KOG1130 Predicted G-alpha GTPa 96.8 0.14 3E-06 48.3 16.6 137 326-462 197-344 (639)
181 PF14559 TPR_19: Tetratricopep 96.8 0.0076 1.7E-07 42.2 7.0 64 232-298 2-65 (68)
182 PF03704 BTAD: Bacterial trans 96.7 0.053 1.2E-06 45.0 13.2 71 222-293 63-138 (146)
183 PF14559 TPR_19: Tetratricopep 96.7 0.0068 1.5E-07 42.5 6.6 52 336-392 3-54 (68)
184 PRK15363 pathogenicity island 96.7 0.044 9.5E-07 44.9 11.6 96 365-462 37-132 (157)
185 PRK10153 DNA-binding transcrip 96.7 0.2 4.2E-06 51.1 18.9 148 209-366 325-489 (517)
186 PRK02603 photosystem I assembl 96.6 0.075 1.6E-06 45.5 13.7 86 362-448 34-121 (172)
187 PF13432 TPR_16: Tetratricopep 96.6 0.014 3E-07 40.5 7.4 54 372-426 6-59 (65)
188 PF13432 TPR_16: Tetratricopep 96.5 0.017 3.6E-07 40.0 7.3 58 227-285 3-60 (65)
189 PF12688 TPR_5: Tetratrico pep 96.4 0.2 4.4E-06 39.5 13.4 86 371-458 9-100 (120)
190 CHL00033 ycf3 photosystem I as 96.4 0.1 2.2E-06 44.5 13.0 96 363-459 35-139 (168)
191 KOG0553 TPR repeat-containing 96.3 0.064 1.4E-06 48.5 11.3 82 303-391 95-177 (304)
192 PRK10803 tol-pal system protei 96.3 0.077 1.7E-06 48.6 12.3 92 327-426 146-245 (263)
193 PF12921 ATP13: Mitochondrial 96.3 0.05 1.1E-06 43.3 9.5 98 323-444 1-99 (126)
194 PF12688 TPR_5: Tetratrico pep 96.3 0.41 8.8E-06 37.8 14.5 22 330-351 44-65 (120)
195 PRK10803 tol-pal system protei 96.3 0.086 1.9E-06 48.3 12.3 99 364-464 144-248 (263)
196 PF13424 TPR_12: Tetratricopep 96.3 0.016 3.5E-07 41.9 6.3 70 71-141 5-74 (78)
197 PF08631 SPO22: Meiosis protei 96.2 1 2.2E-05 42.0 25.1 59 82-142 4-65 (278)
198 PF13414 TPR_11: TPR repeat; P 96.2 0.025 5.4E-07 39.7 7.0 60 399-459 4-64 (69)
199 KOG0553 TPR repeat-containing 96.2 0.069 1.5E-06 48.3 11.0 101 332-440 89-189 (304)
200 PF08631 SPO22: Meiosis protei 96.2 1 2.2E-05 42.0 26.1 177 123-324 3-192 (278)
201 COG4700 Uncharacterized protei 96.2 0.6 1.3E-05 39.2 17.7 132 320-459 85-219 (251)
202 PF13414 TPR_11: TPR repeat; P 96.1 0.046 9.9E-07 38.3 7.9 63 324-391 3-66 (69)
203 COG4235 Cytochrome c biogenesi 96.1 0.42 9.2E-06 43.6 15.2 111 323-441 155-268 (287)
204 PF12921 ATP13: Mitochondrial 95.9 0.23 5E-06 39.6 11.7 100 432-563 1-103 (126)
205 PRK10866 outer membrane biogen 95.9 1.3 2.8E-05 40.3 23.1 56 404-459 181-238 (243)
206 COG5107 RNA14 Pre-mRNA 3'-end 95.9 0.45 9.7E-06 45.6 14.9 50 51-101 23-72 (660)
207 PF13525 YfiO: Outer membrane 95.8 1.2 2.6E-05 39.2 18.4 171 226-416 10-196 (203)
208 KOG1130 Predicted G-alpha GTPa 95.8 1.8 3.9E-05 41.2 18.5 56 78-137 24-79 (639)
209 KOG1538 Uncharacterized conser 95.8 1.6 3.5E-05 44.0 18.7 74 304-392 762-846 (1081)
210 PF10300 DUF3808: Protein of u 95.7 0.88 1.9E-05 45.9 17.7 174 72-283 189-374 (468)
211 PF07079 DUF1347: Protein of u 95.7 2.2 4.7E-05 41.3 34.0 193 257-459 299-521 (549)
212 KOG1538 Uncharacterized conser 95.6 2.8 6E-05 42.4 19.8 200 174-427 619-846 (1081)
213 PF04053 Coatomer_WDAD: Coatom 95.6 0.44 9.6E-06 47.3 14.7 159 79-282 269-428 (443)
214 PF13371 TPR_9: Tetratricopept 95.6 0.11 2.3E-06 36.8 7.9 57 228-285 2-58 (73)
215 PF13424 TPR_12: Tetratricopep 95.5 0.11 2.5E-06 37.3 8.1 66 325-390 6-73 (78)
216 KOG3941 Intermediate in Toll s 95.5 0.29 6.3E-06 43.8 11.5 51 396-446 65-120 (406)
217 KOG0550 Molecular chaperone (D 95.5 1.6 3.4E-05 41.7 16.7 248 168-427 62-350 (486)
218 KOG3941 Intermediate in Toll s 95.5 0.3 6.5E-06 43.8 11.4 114 222-352 68-187 (406)
219 COG4235 Cytochrome c biogenesi 95.4 0.65 1.4E-05 42.4 13.6 98 187-285 152-256 (287)
220 PF13371 TPR_9: Tetratricopept 95.3 0.16 3.4E-06 36.0 8.1 55 333-392 4-58 (73)
221 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.56 1.2E-05 45.7 13.8 65 322-392 73-141 (453)
222 KOG0550 Molecular chaperone (D 95.2 3.1 6.8E-05 39.8 20.1 153 228-392 176-350 (486)
223 KOG2796 Uncharacterized conser 95.2 2.3 4.9E-05 38.0 24.0 59 367-425 181-239 (366)
224 PRK15331 chaperone protein Sic 95.0 0.88 1.9E-05 37.7 12.3 88 333-426 46-133 (165)
225 COG4105 ComL DNA uptake lipopr 95.0 2.6 5.6E-05 37.8 19.8 186 72-285 36-233 (254)
226 COG3898 Uncharacterized membra 95.0 3.5 7.5E-05 39.2 30.9 120 263-392 270-392 (531)
227 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.62 1.3E-05 45.4 12.5 70 67-142 72-141 (453)
228 COG1729 Uncharacterized protei 94.8 0.21 4.6E-06 44.8 8.8 102 72-184 143-244 (262)
229 PF13281 DUF4071: Domain of un 94.7 4.2 9.1E-05 39.1 18.3 161 261-427 146-334 (374)
230 PF10345 Cohesin_load: Cohesin 94.7 6.7 0.00015 41.4 28.0 370 84-460 152-604 (608)
231 PF13170 DUF4003: Protein of u 94.4 4.4 9.5E-05 38.0 19.7 148 291-441 60-225 (297)
232 PF04053 Coatomer_WDAD: Coatom 94.3 2.9 6.3E-05 41.7 16.4 158 228-423 268-427 (443)
233 KOG1585 Protein required for f 94.2 3.7 8.1E-05 36.3 16.0 201 71-313 31-251 (308)
234 COG4649 Uncharacterized protei 94.1 2.1 4.5E-05 35.6 12.2 122 164-285 67-196 (221)
235 COG3898 Uncharacterized membra 94.0 5.9 0.00013 37.7 30.3 281 168-465 97-395 (531)
236 COG4649 Uncharacterized protei 94.0 3.2 6.9E-05 34.6 14.0 139 70-250 58-196 (221)
237 smart00299 CLH Clathrin heavy 93.9 3 6.5E-05 34.1 14.2 83 261-350 12-95 (140)
238 PF13512 TPR_18: Tetratricopep 93.9 1.8 3.9E-05 35.0 11.5 68 70-142 9-76 (142)
239 PF10300 DUF3808: Protein of u 93.9 6.7 0.00014 39.7 18.4 156 300-462 199-376 (468)
240 PRK15331 chaperone protein Sic 93.7 0.9 1.9E-05 37.7 9.6 89 371-461 45-133 (165)
241 PF13512 TPR_18: Tetratricopep 93.6 3 6.6E-05 33.8 12.3 78 332-411 18-95 (142)
242 PF07079 DUF1347: Protein of u 93.3 8.5 0.00018 37.5 37.9 157 81-268 16-179 (549)
243 KOG0543 FKBP-type peptidyl-pro 93.3 2.8 6.1E-05 40.0 13.4 128 332-462 216-355 (397)
244 KOG0543 FKBP-type peptidyl-pro 93.1 2.3 4.9E-05 40.6 12.5 122 371-542 216-355 (397)
245 COG3629 DnrI DNA-binding trans 92.9 1.3 2.8E-05 40.6 10.4 62 399-461 154-215 (280)
246 KOG2114 Vacuolar assembly/sort 92.8 15 0.00032 38.8 29.4 179 74-283 337-517 (933)
247 PF09205 DUF1955: Domain of un 92.7 4.1 8.9E-05 32.3 12.7 67 397-464 85-151 (161)
248 PF09205 DUF1955: Domain of un 92.6 4.3 9.3E-05 32.2 14.9 138 234-395 15-152 (161)
249 smart00299 CLH Clathrin heavy 92.5 5 0.00011 32.7 15.6 110 328-458 11-121 (140)
250 KOG1920 IkappaB kinase complex 92.5 20 0.00044 39.5 23.7 113 288-424 932-1052(1265)
251 KOG2610 Uncharacterized conser 91.9 5.3 0.00012 37.1 12.8 152 234-388 116-272 (491)
252 PF07035 Mic1: Colon cancer-as 91.9 6.9 0.00015 32.9 15.4 133 242-390 15-147 (167)
253 COG1729 Uncharacterized protei 91.8 2.8 6E-05 37.9 10.9 99 326-427 144-244 (262)
254 KOG2610 Uncharacterized conser 91.7 8.7 0.00019 35.8 13.8 153 267-425 114-274 (491)
255 PF13281 DUF4071: Domain of un 91.6 14 0.00029 35.8 22.9 204 131-392 121-334 (374)
256 COG4700 Uncharacterized protei 91.6 7.8 0.00017 32.9 20.2 98 253-352 86-188 (251)
257 COG3629 DnrI DNA-binding trans 91.3 2.8 6E-05 38.5 10.6 77 365-442 155-236 (280)
258 KOG2041 WD40 repeat protein [G 91.3 20 0.00043 37.1 23.6 56 188-247 849-904 (1189)
259 PF09613 HrpB1_HrpK: Bacterial 91.0 6.2 0.00013 32.7 11.3 31 154-184 9-39 (160)
260 PF10602 RPN7: 26S proteasome 91.0 2.5 5.5E-05 36.2 9.6 64 222-285 37-102 (177)
261 KOG4570 Uncharacterized conser 90.9 3.8 8.2E-05 37.7 10.7 102 251-353 59-164 (418)
262 KOG1920 IkappaB kinase complex 90.8 30 0.00066 38.3 21.8 116 321-460 932-1053(1265)
263 KOG4555 TPR repeat-containing 90.7 6.3 0.00014 31.2 10.3 92 372-464 52-146 (175)
264 COG3118 Thioredoxin domain-con 90.6 12 0.00027 34.3 13.7 51 166-218 145-195 (304)
265 COG4105 ComL DNA uptake lipopr 90.5 13 0.00027 33.5 21.7 71 230-300 43-115 (254)
266 TIGR02561 HrpB1_HrpK type III 90.4 4.8 0.00011 32.7 9.9 64 154-219 9-72 (153)
267 KOG4555 TPR repeat-containing 90.3 7.8 0.00017 30.7 11.9 91 333-428 52-145 (175)
268 PF07035 Mic1: Colon cancer-as 90.1 10 0.00022 31.9 15.6 135 309-463 14-150 (167)
269 COG3118 Thioredoxin domain-con 89.4 16 0.00035 33.6 13.5 154 289-451 133-290 (304)
270 PF10602 RPN7: 26S proteasome 89.4 6.1 0.00013 33.8 10.6 102 71-181 36-139 (177)
271 COG0457 NrfG FOG: TPR repeat [ 89.0 16 0.00034 32.3 24.7 198 223-427 61-265 (291)
272 PF13428 TPR_14: Tetratricopep 88.9 1.5 3.3E-05 27.2 5.0 22 330-351 7-28 (44)
273 COG4785 NlpI Lipoprotein NlpI, 88.8 15 0.00033 32.0 13.2 29 257-285 238-266 (297)
274 PF13428 TPR_14: Tetratricopep 88.7 2.2 4.7E-05 26.5 5.7 27 401-427 4-30 (44)
275 COG1747 Uncharacterized N-term 88.7 27 0.00059 34.8 22.2 159 192-353 67-234 (711)
276 PF09613 HrpB1_HrpK: Bacterial 88.7 13 0.00028 30.9 13.6 119 324-454 7-130 (160)
277 PF13176 TPR_7: Tetratricopept 88.6 1.2 2.5E-05 26.3 4.1 23 224-246 2-24 (36)
278 PRK11906 transcriptional regul 88.3 28 0.00061 34.4 19.0 114 234-349 317-432 (458)
279 KOG0276 Vesicle coat complex C 87.7 12 0.00025 38.0 12.3 97 303-424 651-747 (794)
280 KOG1585 Protein required for f 87.5 21 0.00045 31.9 15.2 121 336-457 122-251 (308)
281 PF13176 TPR_7: Tetratricopept 87.2 1.6 3.5E-05 25.6 4.1 26 258-283 1-26 (36)
282 PF04184 ST7: ST7 protein; In 86.0 23 0.00049 35.3 13.1 18 337-354 213-230 (539)
283 PF13170 DUF4003: Protein of u 86.0 31 0.00066 32.5 21.4 130 272-406 78-225 (297)
284 KOG1941 Acetylcholine receptor 85.8 33 0.00071 32.6 15.2 136 72-213 44-184 (518)
285 PF13431 TPR_17: Tetratricopep 85.7 0.69 1.5E-05 26.9 1.9 32 60-92 3-34 (34)
286 TIGR02561 HrpB1_HrpK type III 85.3 19 0.00041 29.4 11.2 105 119-248 16-120 (153)
287 KOG0276 Vesicle coat complex C 84.8 6.4 0.00014 39.7 9.0 153 81-283 596-748 (794)
288 PF13431 TPR_17: Tetratricopep 84.6 1.4 2.9E-05 25.6 2.8 25 187-211 9-33 (34)
289 KOG0686 COP9 signalosome, subu 84.0 43 0.00092 32.4 14.2 160 222-391 151-332 (466)
290 KOG1464 COP9 signalosome, subu 84.0 33 0.00071 31.1 15.1 56 83-142 39-94 (440)
291 KOG4570 Uncharacterized conser 83.6 4 8.8E-05 37.5 6.6 124 369-541 25-163 (418)
292 PRK11906 transcriptional regul 83.5 50 0.0011 32.8 16.4 129 257-392 252-401 (458)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 83.4 13 0.00028 27.7 7.9 46 307-352 25-70 (103)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 83.4 12 0.00025 27.9 7.6 45 416-460 25-69 (103)
295 PF00637 Clathrin: Region in C 82.7 0.32 7E-06 40.0 -0.5 86 369-461 13-98 (143)
296 PF00515 TPR_1: Tetratricopept 82.7 4 8.7E-05 23.3 4.4 27 326-352 3-29 (34)
297 KOG1550 Extracellular protein 82.6 51 0.0011 34.4 15.3 17 336-352 261-277 (552)
298 COG2976 Uncharacterized protei 82.6 31 0.00067 29.7 13.0 90 330-428 95-189 (207)
299 PF04184 ST7: ST7 protein; In 82.4 57 0.0012 32.7 17.3 82 324-408 259-341 (539)
300 PF11207 DUF2989: Protein of u 81.6 14 0.00029 32.1 8.7 69 274-342 124-196 (203)
301 KOG2280 Vacuolar assembly/sort 81.4 76 0.0016 33.5 31.3 60 396-459 682-741 (829)
302 KOG1586 Protein required for f 81.4 39 0.00084 30.1 12.4 18 444-461 165-182 (288)
303 PF13929 mRNA_stabil: mRNA sta 81.1 46 0.001 30.8 14.0 129 203-331 140-285 (292)
304 PF02284 COX5A: Cytochrome c o 80.4 12 0.00027 28.1 7.0 46 307-352 28-73 (108)
305 COG4785 NlpI Lipoprotein NlpI, 80.0 41 0.00089 29.5 14.6 78 204-285 85-162 (297)
306 PF11207 DUF2989: Protein of u 79.9 20 0.00044 31.0 9.2 79 373-453 117-198 (203)
307 PF02284 COX5A: Cytochrome c o 79.9 11 0.00023 28.5 6.5 44 417-460 29-72 (108)
308 PF07719 TPR_2: Tetratricopept 79.8 5.7 0.00012 22.5 4.4 27 326-352 3-29 (34)
309 KOG1550 Extracellular protein 79.8 82 0.0018 32.9 16.8 17 268-284 261-277 (552)
310 PF13374 TPR_10: Tetratricopep 79.7 5.2 0.00011 24.0 4.5 28 257-284 3-30 (42)
311 PF13929 mRNA_stabil: mRNA sta 79.1 54 0.0012 30.3 16.8 136 305-443 144-288 (292)
312 PF00515 TPR_1: Tetratricopept 79.1 6.6 0.00014 22.3 4.5 26 401-426 4-29 (34)
313 COG3947 Response regulator con 79.1 53 0.0012 30.3 17.8 61 400-461 281-341 (361)
314 COG0457 NrfG FOG: TPR repeat [ 78.8 45 0.00097 29.2 26.0 224 234-462 36-265 (291)
315 KOG1941 Acetylcholine receptor 78.6 63 0.0014 30.8 15.1 49 82-135 17-65 (518)
316 PF13374 TPR_10: Tetratricopep 78.3 5.6 0.00012 23.9 4.3 25 400-424 4-28 (42)
317 PF08424 NRDE-2: NRDE-2, neces 78.2 38 0.00083 32.4 11.8 122 59-187 54-186 (321)
318 PF00637 Clathrin: Region in C 77.7 0.39 8.4E-06 39.6 -1.6 128 77-236 13-140 (143)
319 PF13174 TPR_6: Tetratricopept 76.5 4.3 9.3E-05 22.8 3.2 26 117-142 4-29 (33)
320 PRK15180 Vi polysaccharide bio 75.6 15 0.00033 36.0 8.0 119 268-392 301-420 (831)
321 PF02259 FAT: FAT domain; Int 75.6 79 0.0017 30.5 21.0 63 364-426 147-212 (352)
322 PF13762 MNE1: Mitochondrial s 75.1 44 0.00096 27.3 10.8 49 397-445 78-127 (145)
323 COG4455 ImpE Protein of avirul 74.8 29 0.00063 30.4 8.7 77 326-407 3-81 (273)
324 PF07719 TPR_2: Tetratricopept 73.5 11 0.00025 21.2 4.5 22 404-425 7-28 (34)
325 PF06552 TOM20_plant: Plant sp 73.4 57 0.0012 27.8 11.3 28 414-443 96-123 (186)
326 COG5159 RPN6 26S proteasome re 73.2 45 0.00097 30.6 9.7 63 75-137 7-69 (421)
327 PRK15180 Vi polysaccharide bio 72.0 80 0.0017 31.4 11.8 115 168-285 302-420 (831)
328 PF13174 TPR_6: Tetratricopept 71.9 8 0.00017 21.6 3.6 29 74-102 3-31 (33)
329 PF02259 FAT: FAT domain; Int 71.4 1E+02 0.0022 29.7 18.8 67 396-462 144-213 (352)
330 PF13181 TPR_8: Tetratricopept 70.1 10 0.00022 21.5 3.8 28 326-353 3-30 (34)
331 KOG2066 Vacuolar assembly/sort 69.9 1.6E+02 0.0034 31.4 29.9 150 120-284 363-533 (846)
332 PF07575 Nucleopor_Nup85: Nup8 69.5 1.5E+02 0.0033 31.1 17.6 63 322-390 403-465 (566)
333 TIGR03504 FimV_Cterm FimV C-te 69.3 13 0.00028 23.1 4.1 23 404-426 5-27 (44)
334 PHA02875 ankyrin repeat protei 69.3 86 0.0019 31.2 12.5 45 385-433 183-230 (413)
335 TIGR03504 FimV_Cterm FimV C-te 68.7 13 0.00029 23.1 4.0 24 227-250 5-28 (44)
336 COG2976 Uncharacterized protei 67.9 78 0.0017 27.4 9.6 58 227-286 132-189 (207)
337 PF13181 TPR_8: Tetratricopept 66.8 16 0.00036 20.6 4.2 27 223-249 3-29 (34)
338 KOG4234 TPR repeat-containing 66.7 74 0.0016 27.6 9.2 90 332-427 103-197 (271)
339 COG4455 ImpE Protein of avirul 66.7 48 0.001 29.2 8.2 77 365-442 3-81 (273)
340 PF11848 DUF3368: Domain of un 66.3 27 0.00059 22.2 5.3 33 409-441 13-45 (48)
341 PF10579 Rapsyn_N: Rapsyn N-te 66.1 25 0.00054 25.1 5.4 51 228-279 14-66 (80)
342 PF07163 Pex26: Pex26 protein; 65.4 84 0.0018 28.9 9.8 91 327-421 86-181 (309)
343 KOG4234 TPR repeat-containing 65.1 66 0.0014 27.9 8.7 85 302-392 108-197 (271)
344 PF07721 TPR_4: Tetratricopept 65.0 9.7 0.00021 20.3 2.7 23 73-95 3-25 (26)
345 cd08819 CARD_MDA5_2 Caspase ac 63.4 46 0.00099 24.4 6.4 66 174-241 21-86 (88)
346 COG5187 RPN7 26S proteasome re 63.4 1.3E+02 0.0027 27.9 13.4 169 277-448 59-242 (412)
347 COG1747 Uncharacterized N-term 63.3 1.7E+02 0.0038 29.5 19.8 164 288-463 63-235 (711)
348 PF13762 MNE1: Mitochondrial s 63.3 83 0.0018 25.8 11.7 98 315-412 28-129 (145)
349 KOG4648 Uncharacterized conser 63.2 56 0.0012 30.8 8.5 81 330-424 103-184 (536)
350 PF13934 ELYS: Nuclear pore co 62.6 1.2E+02 0.0025 27.3 14.5 104 154-268 78-184 (226)
351 PRK11619 lytic murein transgly 62.1 2.2E+02 0.0048 30.4 31.8 313 122-461 42-374 (644)
352 cd00280 TRFH Telomeric Repeat 61.8 67 0.0014 27.4 8.0 56 87-142 85-140 (200)
353 TIGR02508 type_III_yscG type I 61.3 69 0.0015 24.2 8.4 39 512-551 67-105 (115)
354 PF11848 DUF3368: Domain of un 61.0 35 0.00076 21.6 5.1 32 232-263 13-44 (48)
355 PF14689 SPOB_a: Sensor_kinase 60.0 27 0.00059 23.6 4.7 46 414-461 6-51 (62)
356 TIGR02508 type_III_yscG type I 59.9 73 0.0016 24.1 7.8 52 264-319 47-98 (115)
357 PF04097 Nic96: Nup93/Nic96; 59.5 2.4E+02 0.0053 29.9 17.2 88 331-427 265-356 (613)
358 KOG2066 Vacuolar assembly/sort 59.4 2.5E+02 0.0054 30.1 24.2 59 77-141 362-420 (846)
359 PF10579 Rapsyn_N: Rapsyn N-te 59.1 33 0.00072 24.5 5.0 54 77-136 13-66 (80)
360 COG2909 MalT ATP-dependent tra 58.9 2.7E+02 0.0059 30.3 31.5 193 267-463 426-648 (894)
361 PF11663 Toxin_YhaV: Toxin wit 58.1 8.9 0.00019 30.5 2.3 32 81-112 105-136 (140)
362 PF11663 Toxin_YhaV: Toxin wit 57.5 12 0.00025 29.9 2.8 31 168-201 108-138 (140)
363 KOG4077 Cytochrome c oxidase, 57.1 91 0.002 24.7 7.4 46 307-352 67-112 (149)
364 COG3947 Response regulator con 56.2 77 0.0017 29.3 8.0 70 223-293 281-355 (361)
365 KOG0991 Replication factor C, 56.0 1.5E+02 0.0033 26.5 11.8 106 407-549 168-274 (333)
366 COG5159 RPN6 26S proteasome re 55.8 1.7E+02 0.0037 27.0 13.8 52 121-172 11-62 (421)
367 PF07163 Pex26: Pex26 protein; 55.7 1.5E+02 0.0032 27.4 9.7 58 228-285 90-147 (309)
368 COG5187 RPN7 26S proteasome re 55.6 1.7E+02 0.0038 27.1 16.0 14 377-390 206-219 (412)
369 KOG2114 Vacuolar assembly/sort 54.6 3.1E+02 0.0068 29.7 28.5 145 75-247 372-516 (933)
370 KOG4077 Cytochrome c oxidase, 53.8 97 0.0021 24.6 7.1 44 383-426 69-112 (149)
371 PHA02875 ankyrin repeat protei 53.4 2.2E+02 0.0047 28.3 12.1 201 122-347 8-222 (413)
372 PF14689 SPOB_a: Sensor_kinase 52.9 42 0.0009 22.7 4.7 26 365-390 25-50 (62)
373 PF09477 Type_III_YscG: Bacter 52.0 1.1E+02 0.0023 23.6 7.9 81 234-319 19-99 (116)
374 PF07064 RIC1: RIC1; InterPro 51.3 2E+02 0.0043 26.5 14.4 87 194-284 156-248 (258)
375 KOG4648 Uncharacterized conser 51.2 1E+02 0.0023 29.2 8.2 48 303-352 111-159 (536)
376 PF10366 Vps39_1: Vacuolar sor 50.8 43 0.00093 25.9 5.1 27 223-249 41-67 (108)
377 PF09670 Cas_Cas02710: CRISPR- 50.7 1.6E+02 0.0035 28.9 10.3 60 120-183 138-197 (379)
378 PF09454 Vps23_core: Vps23 cor 50.7 42 0.00092 23.0 4.4 48 397-445 7-54 (65)
379 PF00244 14-3-3: 14-3-3 protei 50.2 2E+02 0.0043 26.1 10.7 59 226-284 6-65 (236)
380 PF14669 Asp_Glu_race_2: Putat 50.0 1.7E+02 0.0037 25.3 17.0 59 223-281 134-206 (233)
381 PRK10564 maltose regulon perip 50.0 30 0.00066 32.1 4.7 29 367-395 261-289 (303)
382 PF10475 DUF2450: Protein of u 49.2 1.8E+02 0.004 27.3 10.0 107 227-344 104-217 (291)
383 KOG0687 26S proteasome regulat 49.1 2.4E+02 0.0052 26.7 13.6 94 223-316 106-208 (393)
384 COG2909 MalT ATP-dependent tra 48.7 4E+02 0.0086 29.2 29.4 227 229-458 423-684 (894)
385 PRK09687 putative lyase; Provi 48.5 2.3E+02 0.005 26.4 28.3 212 223-461 39-262 (280)
386 PRK10564 maltose regulon perip 47.3 43 0.00092 31.1 5.2 46 395-440 253-299 (303)
387 PF11846 DUF3366: Domain of un 47.0 1.1E+02 0.0023 26.6 7.8 54 232-285 119-173 (193)
388 smart00777 Mad3_BUB1_I Mad3/BU 46.6 79 0.0017 25.2 6.0 45 171-245 79-123 (125)
389 PF04097 Nic96: Nup93/Nic96; 46.2 3.9E+02 0.0085 28.4 20.0 27 71-98 112-138 (613)
390 PF11846 DUF3366: Domain of un 46.0 93 0.002 27.0 7.2 32 430-461 141-172 (193)
391 smart00028 TPR Tetratricopepti 46.0 45 0.00097 17.4 3.9 26 327-352 4-29 (34)
392 PRK11619 lytic murein transgly 45.1 4.2E+02 0.0091 28.4 27.6 115 303-424 255-372 (644)
393 PF11817 Foie-gras_1: Foie gra 44.9 1.1E+02 0.0024 27.9 7.7 56 368-423 183-243 (247)
394 COG5108 RPO41 Mitochondrial DN 44.1 1.4E+02 0.0031 31.1 8.6 85 196-283 33-130 (1117)
395 TIGR02710 CRISPR-associated pr 43.6 2.7E+02 0.0059 27.2 10.2 61 119-180 136-196 (380)
396 COG4003 Uncharacterized protei 42.5 82 0.0018 22.5 4.8 59 67-125 26-85 (98)
397 PRK14956 DNA polymerase III su 42.1 3.9E+02 0.0085 27.2 12.2 42 275-316 185-227 (484)
398 KOG2063 Vacuolar assembly/sort 40.9 5.4E+02 0.012 28.5 15.1 29 71-99 504-532 (877)
399 KOG0687 26S proteasome regulat 40.1 3.3E+02 0.0072 25.8 17.8 167 235-426 36-209 (393)
400 KOG1586 Protein required for f 39.8 2.8E+02 0.0062 25.0 17.7 19 303-321 168-186 (288)
401 cd08819 CARD_MDA5_2 Caspase ac 39.8 1.5E+02 0.0033 21.8 6.5 66 382-453 21-86 (88)
402 COG2178 Predicted RNA-binding 38.8 2.6E+02 0.0057 24.2 11.1 77 305-392 19-98 (204)
403 PF10345 Cohesin_load: Cohesin 38.3 5.2E+02 0.011 27.5 37.8 115 65-184 53-168 (608)
404 PF12862 Apc5: Anaphase-promot 38.0 1.7E+02 0.0036 21.7 7.6 55 335-390 9-68 (94)
405 KOG4567 GTPase-activating prot 37.6 1.7E+02 0.0038 27.3 7.4 71 383-458 263-343 (370)
406 TIGR01503 MthylAspMut_E methyl 37.4 1.8E+02 0.004 29.0 8.0 48 413-463 69-116 (480)
407 PF10475 DUF2450: Protein of u 37.2 3.6E+02 0.0077 25.3 10.6 24 430-453 194-217 (291)
408 PF10366 Vps39_1: Vacuolar sor 37.0 96 0.0021 23.9 5.1 27 365-391 41-67 (108)
409 COG0735 Fur Fe2+/Zn2+ uptake r 36.9 1.8E+02 0.0038 23.9 7.0 64 384-448 7-70 (145)
410 PRK09687 putative lyase; Provi 36.9 3.6E+02 0.0077 25.2 25.5 198 222-444 69-278 (280)
411 KOG2908 26S proteasome regulat 36.6 3.9E+02 0.0084 25.6 11.6 68 330-398 81-155 (380)
412 COG5108 RPO41 Mitochondrial DN 36.4 2E+02 0.0043 30.1 8.2 47 368-414 33-81 (1117)
413 PF09670 Cas_Cas02710: CRISPR- 36.3 4.3E+02 0.0094 26.0 11.7 18 233-250 143-160 (379)
414 PF10255 Paf67: RNA polymerase 35.4 1.2E+02 0.0026 29.9 6.5 28 222-249 165-192 (404)
415 PF11817 Foie-gras_1: Foie gra 34.9 1.2E+02 0.0026 27.7 6.3 21 77-97 184-204 (247)
416 PF04090 RNA_pol_I_TF: RNA pol 34.6 2.1E+02 0.0046 25.0 7.2 61 222-283 42-103 (199)
417 PF09477 Type_III_YscG: Bacter 33.6 2.2E+02 0.0049 21.9 7.7 11 442-452 49-59 (116)
418 PF09868 DUF2095: Uncharacteri 33.4 2.2E+02 0.0048 22.1 6.1 34 404-438 67-100 (128)
419 KOG1258 mRNA processing protei 33.3 5.7E+02 0.012 26.5 25.1 112 129-250 61-180 (577)
420 KOG0159 Cytochrome P450 CYP11/ 33.0 5.3E+02 0.011 26.5 10.5 49 269-317 311-359 (519)
421 KOG1258 mRNA processing protei 32.6 5.9E+02 0.013 26.5 36.6 414 71-562 45-489 (577)
422 KOG0991 Replication factor C, 32.6 3.8E+02 0.0082 24.2 15.2 153 223-410 132-284 (333)
423 PRK13184 pknD serine/threonine 31.5 8E+02 0.017 27.7 28.7 315 120-461 482-832 (932)
424 PF06552 TOM20_plant: Plant sp 31.4 3.4E+02 0.0073 23.3 12.4 29 308-338 54-83 (186)
425 KOG4279 Serine/threonine prote 31.2 7E+02 0.015 26.9 11.8 177 238-428 180-396 (1226)
426 KOG4567 GTPase-activating prot 30.7 3E+02 0.0064 25.9 7.7 43 309-351 263-305 (370)
427 PF12862 Apc5: Anaphase-promot 30.4 2.3E+02 0.0049 21.0 7.0 22 263-284 48-69 (94)
428 KOG2168 Cullins [Cell cycle co 29.6 7.4E+02 0.016 27.1 11.4 107 72-184 623-736 (835)
429 PF10255 Paf67: RNA polymerase 29.5 5.7E+02 0.012 25.4 13.9 105 76-182 80-191 (404)
430 COG4003 Uncharacterized protei 28.8 2.2E+02 0.0049 20.4 5.8 31 404-435 37-67 (98)
431 PF04762 IKI3: IKI3 family; I 28.6 9E+02 0.02 27.4 16.3 30 256-285 812-843 (928)
432 KOG3364 Membrane protein invol 28.1 3.3E+02 0.0072 22.2 9.3 67 361-427 30-100 (149)
433 KOG3807 Predicted membrane pro 27.9 5.3E+02 0.012 24.5 9.6 122 272-405 232-354 (556)
434 KOG4279 Serine/threonine prote 27.6 8.1E+02 0.017 26.5 12.8 187 70-285 200-395 (1226)
435 KOG2659 LisH motif-containing 27.3 4.5E+02 0.0097 23.5 8.0 20 370-389 71-90 (228)
436 PF12926 MOZART2: Mitotic-spin 27.2 2.6E+02 0.0055 20.6 7.6 43 419-461 29-71 (88)
437 KOG0376 Serine-threonine phosp 27.1 1.7E+02 0.0037 29.3 6.0 105 332-446 12-118 (476)
438 PRK06645 DNA polymerase III su 27.1 7.2E+02 0.016 25.7 11.3 32 285-316 203-234 (507)
439 PF14561 TPR_20: Tetratricopep 27.0 2.6E+02 0.0057 20.6 7.5 54 218-271 19-73 (90)
440 PF09986 DUF2225: Uncharacteri 26.7 4.5E+02 0.0099 23.3 9.3 99 80-185 86-195 (214)
441 KOG2062 26S proteasome regulat 26.7 8.3E+02 0.018 26.3 16.6 154 121-285 67-239 (929)
442 KOG2659 LisH motif-containing 26.6 4.7E+02 0.01 23.4 10.2 98 359-458 22-128 (228)
443 PRK13342 recombination factor 26.3 6.6E+02 0.014 25.0 18.7 122 288-430 173-302 (413)
444 PF03745 DUF309: Domain of unk 26.2 2.1E+02 0.0046 19.3 5.1 47 409-455 10-61 (62)
445 TIGR01228 hutU urocanate hydra 25.9 4.3E+02 0.0093 26.8 8.3 15 512-526 458-472 (545)
446 PF09454 Vps23_core: Vps23 cor 25.6 2.3E+02 0.005 19.5 4.9 51 359-410 4-54 (65)
447 KOG4507 Uncharacterized conser 25.2 5.6E+02 0.012 26.7 9.1 28 71-98 212-240 (886)
448 PRK11639 zinc uptake transcrip 25.1 3.6E+02 0.0077 22.9 7.1 61 389-450 17-77 (169)
449 PF08311 Mad3_BUB1_I: Mad3/BUB 24.9 3.6E+02 0.0078 21.5 10.8 47 170-246 78-124 (126)
450 PRK14958 DNA polymerase III su 24.7 7.9E+02 0.017 25.4 11.8 37 513-549 244-281 (509)
451 PRK07764 DNA polymerase III su 24.6 1E+03 0.022 26.6 12.1 67 285-352 195-275 (824)
452 KOG2063 Vacuolar assembly/sort 24.4 1E+03 0.022 26.6 17.2 66 74-142 310-375 (877)
453 PF12522 UL73_N: Cytomegalovir 24.0 42 0.00091 17.8 0.7 12 3-14 8-19 (27)
454 PF04192 Utp21: Utp21 specific 23.8 5.5E+02 0.012 23.3 9.5 30 71-100 110-139 (237)
455 smart00386 HAT HAT (Half-A-TPR 23.7 1.3E+02 0.0029 16.1 4.0 29 235-264 1-29 (33)
456 PF09868 DUF2095: Uncharacteri 23.7 3.4E+02 0.0075 21.1 5.7 26 226-251 66-91 (128)
457 KOG2034 Vacuolar sorting prote 23.6 1E+03 0.022 26.3 24.0 45 198-246 511-555 (911)
458 PF04910 Tcf25: Transcriptiona 23.5 7E+02 0.015 24.4 18.1 57 227-283 109-166 (360)
459 PRK09857 putative transposase; 23.2 6.3E+02 0.014 23.8 9.2 55 409-464 217-271 (292)
460 TIGR01503 MthylAspMut_E methyl 23.0 5.1E+02 0.011 26.1 8.3 112 206-320 29-165 (480)
461 cd07153 Fur_like Ferric uptake 22.1 1.9E+02 0.0041 22.4 4.7 46 227-272 6-51 (116)
462 cd08326 CARD_CASP9 Caspase act 22.0 3.2E+02 0.007 19.9 6.1 34 235-272 44-77 (84)
463 PRK14958 DNA polymerase III su 21.9 9E+02 0.019 25.0 12.4 33 284-316 193-225 (509)
464 COG0735 Fur Fe2+/Zn2+ uptake r 21.7 4.5E+02 0.0099 21.5 7.6 33 306-338 37-69 (145)
465 KOG0292 Vesicle coat complex C 21.6 1.1E+03 0.024 26.1 11.0 123 123-274 1001-1137(1202)
466 PF02847 MA3: MA3 domain; Int 21.5 1.8E+02 0.0039 22.4 4.4 83 367-450 6-89 (113)
467 PRK14956 DNA polymerase III su 21.3 9E+02 0.019 24.8 11.9 45 306-352 183-228 (484)
468 COG2812 DnaX DNA polymerase II 21.2 9.2E+02 0.02 24.9 11.2 88 236-325 179-281 (515)
469 TIGR02710 CRISPR-associated pr 21.1 8E+02 0.017 24.1 12.4 55 227-281 136-196 (380)
470 PRK13341 recombination factor 21.0 1.1E+03 0.024 25.7 13.9 51 513-563 257-308 (725)
471 PHA02940 hypothetical protein; 21.0 6.2E+02 0.014 22.8 11.3 70 366-443 145-214 (315)
472 PF12169 DNA_pol3_gamma3: DNA 20.8 3.6E+02 0.0079 21.7 6.3 38 73-111 17-54 (143)
473 KOG2675 Adenylate cyclase-asso 20.6 1.2E+02 0.0026 29.7 3.5 10 3-12 211-220 (480)
474 COG4941 Predicted RNA polymera 20.4 7.7E+02 0.017 23.7 12.1 115 305-427 272-394 (415)
475 PRK09857 putative transposase; 20.4 7.3E+02 0.016 23.4 10.7 65 367-432 210-274 (292)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-60 Score=501.91 Aligned_cols=487 Identities=19% Similarity=0.246 Sum_probs=416.5
Q ss_pred hhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCC-hhHHHhH------------------------HHHHHHhhhhHhh
Q 008265 69 SRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASM------------------------LSLEMVASGIVKS 123 (572)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~------------------------~~~~~~~~~~~~~ 123 (572)
++...|..++..+++.|++++|.++|++|...|+. ++..... .+..+++.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34788999999999999999999999999998864 3322111 1235678889999
Q ss_pred hhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhc
Q 008265 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (572)
Q Consensus 124 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 203 (572)
++.|++++|.++|++|.+.|+.||.. +|+.++.+|+. .|++++|.++|++|.+.|+.| +..+|+.+|.+|++
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~----tynsLI~~y~k---~G~vd~A~~vf~eM~~~Gv~P-dvvTynaLI~gy~k 519 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCK----LYTTLISTCAK---SGKVDAMFEVFHEMVNAGVEA-NVHTFGALIDGCAR 519 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHh---CcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH
Confidence 99999999999999999999999887 77777776655 899999999999999999876 46899999999999
Q ss_pred CCChHHHHHhhhcC-----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 008265 204 KPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKK--HLSSPNMYICRTIIDVCGICGDYMKSR 276 (572)
Q Consensus 204 ~g~~~~a~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~ 276 (572)
.|++++|.++|+.| .++..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999887 45669999999999999999999999999976 578999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008265 277 AIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (572)
Q Consensus 277 ~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 354 (572)
++|++|.+.|+.|+..+|+.+|.+|+ |++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-- 677 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-- 677 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--
Confidence 99999999999999999999999987 78999999999999999999999999999999999999999999999986
Q ss_pred HhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 008265 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (572)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 434 (572)
.| +.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 678 -~G-~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 678 -QG-IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred -cC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 45 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhcccc----ccCCCCc--------ccCCcc
Q 008265 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS----ITNTPNF--------VPNSHY 502 (572)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--------~~~~~~ 502 (572)
||+.++.+|++.|++++|.++|++|.+.|..++... ++...+.......++... .....+. ...-.+
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t-ynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM-CRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHH
Confidence 999999999999999999999999999988765321 222222211111111100 0000000 011345
Q ss_pred chhhhhcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCccccccc
Q 008265 503 SSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
++.|.+.|+.||..||+.+|.++++ ..+.+..++++|...+..|+..+|++|+++|.+. .++|+.+
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 7789999999999999999976665 4578889999998889999999999999998542 2456543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-59 Score=497.86 Aligned_cols=450 Identities=18% Similarity=0.254 Sum_probs=398.2
Q ss_pred hhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcc
Q 008265 69 SRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (572)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 148 (572)
|+..+|+.+|.+|++.|+++.|.++|+.|.+.|+.|+ ..+++.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD-------~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv 507 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD-------CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH
Confidence 5679999999999999999999999999999999998 556888999999999999999999999999999988
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCC-------Cch
Q 008265 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP-------RAD 221 (572)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~ 221 (572)
. +|+.++.+|+. .|++++|+++|++|.+.|+.|+ ..+|+.|+.+|++.|++++|.++|+.|. ++.
T Consensus 508 v----TynaLI~gy~k---~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 508 H----TFGALIDGCAR---AGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred H----HHHHHHHHHHH---CcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 7 77777776655 8999999999999999998875 5899999999999999999999998873 456
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
.+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.++
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccH
Q 008265 302 A--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (572)
Q Consensus 302 ~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 379 (572)
+ |+.++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .| +.||..+|++||.+|++.|++
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~---~g-~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS---IK-LRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---cC-CCCCHHHHHHHHHHHHHCCCH
Confidence 7 78999999999999999999999999999999999999999999999986 44 799999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hC--------
Q 008265 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE----AC-------- 447 (572)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g-------- 447 (572)
++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|.+|.+.|+.||..+|++++..|.+ ++
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~ 815 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVS 815 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999976542 21
Q ss_pred -----------CHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHH
Q 008265 448 -----------QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516 (572)
Q Consensus 448 -----------~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 516 (572)
..++|..+|++|.+.|..|+.... ...+.-+ +... +......+++.|...+..|+..
T Consensus 816 f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~-~~vL~cl------~~~~-----~~~~~~~m~~~m~~~~~~~~~~ 883 (1060)
T PLN03218 816 FDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL-SQVLGCL------QLPH-----DATLRNRLIENLGISADSQKQS 883 (1060)
T ss_pred hhccccccccchHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHh------cccc-----cHHHHHHHHHHhccCCCCcchh
Confidence 236799999999999987653211 1111000 0000 0000012233345556788999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhCCCCCCHH
Q 008265 517 TYNILMKACCTDYYRVKALMNEMRTVGLSPNHI 549 (572)
Q Consensus 517 ~~~~ll~a~~~~~~~a~~~~~~m~~~g~~p~~~ 549 (572)
+|+++|++|++..++|..++++|...|+.|+..
T Consensus 884 ~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 884 NLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence 999999999876789999999999999999975
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-58 Score=486.55 Aligned_cols=453 Identities=18% Similarity=0.236 Sum_probs=403.1
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhc-CChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
...|+.+|..+++.|++++|+++|+.|...+ ..|+ ..+++.++.++.+.++++.|..++..|.+.|+.||..
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~-------~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLP-------ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 4689999999999999999999999999765 5666 4557888999999999999999999999999999877
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC-----CCchhHH
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-----PRADILF 224 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-----~~~~~~~ 224 (572)
+++.++.++ .+.|+++.|.++|++|.+ ++..+|+.++.+|++.|++++|+++|+.| .++..+|
T Consensus 160 ----~~n~Li~~y---~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 227 (697)
T PLN03081 160 ----MMNRVLLMH---VKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227 (697)
T ss_pred ----HHHHHHHHH---hcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhH
Confidence 666666654 448999999999999854 46789999999999999999999999987 3445899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--
Q 008265 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-- 302 (572)
Q Consensus 225 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-- 302 (572)
+.++.+|++.|+.+.+.+++..+.+.|+.||..+||.+|++|+++|++++|.++|++|.. +|..+||.+|.+|+
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALH 303 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999964 58999999999987
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+ .| +.||..+|++||.+|++.|++++|
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~---~g-~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR---TG-FPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH---hC-CCCCeeehHHHHHHHHHCCCHHHH
Confidence 78999999999999999999999999999999999999999999999987 45 789999999999999999999999
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+.
T Consensus 380 ~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 380 RNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 99999997 47999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred -ccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHH
Q 008265 463 -KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEM 539 (572)
Q Consensus 463 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m 539 (572)
+.. +...++.++++.+.+...... +.+.+++.++.||..+|++||.+|+. +.+.|..+++++
T Consensus 456 ~g~~-p~~~~y~~li~~l~r~G~~~e--------------A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 456 HRIK-PRAMHYACMIELLGREGLLDE--------------AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred cCCC-CCccchHhHHHHHHhcCCHHH--------------HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 443 344556666666555444332 34567788899999999999999987 568999999998
Q ss_pred HhCCCCCC-HHHHHHHHHHHHccCCcccccccc
Q 008265 540 RTVGLSPN-HISWTILIDACGGSGNVEGALQCR 571 (572)
Q Consensus 540 ~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 571 (572)
.+ +.|+ ..+|..|+++|++.|+|++|.+++
T Consensus 521 ~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 521 YG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred hC--CCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 65 5675 679999999999999999999875
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-57 Score=489.90 Aligned_cols=473 Identities=15% Similarity=0.164 Sum_probs=245.0
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHH--hHHH--------------------------HHHHhhhhH
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA--SMLS--------------------------LEMVASGIV 121 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~~--------------------------~~~~~~~~~ 121 (572)
+...++.++.++++.|++++|..+|+.|.+.|..|+..+ .++. ....+.++.
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 356677777777777777777777777776665544322 1110 112234444
Q ss_pred hhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCc------------
Q 008265 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVK------------ 189 (572)
Q Consensus 122 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~------------ 189 (572)
.|++.|+++.|.++|++|.+ ||.. +|+.++.+++ +.|++++|+++|++|...|+.|+
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~----~d~~----~~n~li~~~~---~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPE----RDLF----SWNVLVGGYA---KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHhCCChHHHHHHHhcCCC----CCee----EHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 55555555555555555532 2333 3444444332 24555555555555555444443
Q ss_pred ----------------------ccchHHHHHHHHhcCCChHHHHHhhhcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 190 ----------------------ELDEEFRIVQLCVNKPDVNLAIRYACIVPRA-DILFCNFVREFGKKRDLVSALRAYDA 246 (572)
Q Consensus 190 ----------------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 246 (572)
+..+++.++.+|++.|+++.|.++|+.|+.. ..+||++|.+|++.|++++|.++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 2345556666666666666666666666443 35666666666666666666666666
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCH
Q 008265 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADM 324 (572)
Q Consensus 247 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~ 324 (572)
|.+.|+.||..+|+.+|.+|++.|+++.|.+++..|.+.|+.||..+|+.+|.+|+ |++++|.++|++|. .||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence 66666666666666666666666666666666666666666666666666655543 45555555555543 2344
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
.+|+.+|.+|++.|++++|.++|++|.+ .| +.||..+|+.++.+|++.|++++|.+++..|.+.|+.|+..+|++|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~---~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQ---DN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHH---hC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 5555555555555555555555555543 22 4455555555555555555555555555555555544444444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh------------------------
Q 008265 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT------------------------ 460 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------------------ 460 (572)
|.+|++.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|.++|++|.
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHH
Confidence 444444444444444444443 2233344444444444444444444444443
Q ss_pred ----------hcccccccccccCCchHHHHhhhhhccc----------------cccCCCCccc-------CCccchhhh
Q 008265 461 ----------LSKTQVALGEDYDGNTDRISNMEHKDKQ----------------SITNTPNFVP-------NSHYSSFDK 507 (572)
Q Consensus 461 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~-------~~~~~~~~~ 507 (572)
+.|..++.. .++. +..++.++.. .+..+...+. ...+++.|.
T Consensus 507 ~~~~i~~~~~~~g~~~~~~-~~na----Li~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGF-LPNA----LLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HhHHHHHHHHHhCCCccce-echH----HHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222211100 0000 1111111100 0000000000 023455566
Q ss_pred hcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHccCCccccccc
Q 008265 508 RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMR-TVGLSPNHISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 508 ~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
+.|+.||..||+++|.+|++ ..++|.++|+.|. +.|+.|+..+|++|+++|++.|++++|.++
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~ 647 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 66777777777777777765 3467777777776 457777777777777777777777776654
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-56 Score=480.66 Aligned_cols=466 Identities=15% Similarity=0.189 Sum_probs=288.0
Q ss_pred CchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHH----------------------------HHHHhh
Q 008265 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS----------------------------LEMVAS 118 (572)
Q Consensus 67 p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~----------------------------~~~~~~ 118 (572)
|.++..+|+.+|.+|++.|++++|+++|++|...|+.|+.++.... ..+++.
T Consensus 148 ~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 5567899999999999999999999999999999998886543211 112344
Q ss_pred hhHhhhhhCChhHHHHHHHHh-------------------------------hhcCCCCcchhhhhhhHHHHHHHHHHhh
Q 008265 119 GIVKSIREGRIDCVVGVLKKL-------------------------------NELGVAPLELFDGSGFKLLKNECQRLLD 167 (572)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~m-------------------------------~~~~~~p~~~~~~~~~~~l~~~~~~~~~ 167 (572)
++..|++.|++++|..+|++| ...|+.||.. +|+.++.+|+.
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~----ty~~ll~a~~~--- 300 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM----TITSVISACEL--- 300 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh----HHHHHHHHHHh---
Confidence 555555555555555555554 4444444433 33444443333
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA-DILFCNFVREFGKKRDLVSALRAYDA 246 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 246 (572)
.|+++.|.+++..|.+.|+.| +..+|+.|+.+|++.|++++|.++|+.|+.. ..+|+++|.+|++.|++++|.++|++
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred cCChHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344444444444444444433 2345555555555555555555555555432 25555555555555555555555555
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCH
Q 008265 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADM 324 (572)
Q Consensus 247 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~ 324 (572)
|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|+ |++++|.++|++|.+ +|.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 455 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDV 455 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCe
Confidence 55555555555555555555555555555555555555555555555555555543 455555555555542 344
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
.+|+.+|.+|++.|+.++|..+|++|.. + +.||..+|+.++.+|++.|+++.+.+++..+.+.|+.+|..++|+|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~----~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL----T-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh----C-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 5555555555555555555555555542 2 4566666666666666555555555555555555555555555556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhh
Q 008265 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (572)
|.+|++.|++++|.++|+.+ .||..+|+++|.+|++.|+.++|.++|++|.+.|..|+... +............
T Consensus 531 i~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~ 604 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGM 604 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcCh
Confidence 66666666666666666554 56777788888888888888888888888887776654322 2222111111111
Q ss_pred hccccccCCCCcccCCccchhhh-hcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 008265 485 KDKQSITNTPNFVPNSHYSSFDK-RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561 (572)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 561 (572)
... ...+++.|. +.|+.|+..+|++++++|++ +.++|.+++++|. +.||..+|++|+.+|..+
T Consensus 605 v~e-----------a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 605 VTQ-----------GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHH-----------HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHc
Confidence 100 022345555 67899999999999999998 5699999999983 789999999999999999
Q ss_pred CCcccccc
Q 008265 562 GNVEGALQ 569 (572)
Q Consensus 562 g~~~~a~~ 569 (572)
|+.+.|+.
T Consensus 671 ~~~e~~e~ 678 (857)
T PLN03077 671 RHVELGEL 678 (857)
T ss_pred CChHHHHH
Confidence 99987654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-52 Score=442.79 Aligned_cols=429 Identities=13% Similarity=0.212 Sum_probs=370.5
Q ss_pred hhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcc
Q 008265 69 SRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (572)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 148 (572)
++..+|+.++.++++.++++.|.+++..|.+.|+.|+ ..+++.++..|++.|++++|.++|++|.+ ||.
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~-------~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~ 189 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD-------QYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNL 189 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc-------hHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCe
Confidence 4579999999999999999999999999999999988 45588889999999999999999999965 566
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC-----CCchhH
Q 008265 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-----PRADIL 223 (572)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-----~~~~~~ 223 (572)
. +|+.++.+++. .|++++|+++|++|.+.|..|+ ..+++.++.+|+..|..+.+.+++..+ .++..+
T Consensus 190 ~----t~n~li~~~~~---~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 190 A----SWGTIIGGLVD---AGNYREAFALFREMWEDGSDAE-PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred e----eHHHHHHHHHH---CcCHHHHHHHHHHHHHhCCCCC-hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee
Confidence 5 67777776554 7999999999999999998765 478999999999999999999987764 455689
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc-
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA- 302 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~- 302 (572)
+++||.+|++.|++++|.++|+.|.+ +|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+++
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999965 6899999999999999999999999999999999999999999999987
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 303 -HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 303 -~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
|++++|.+++..|.+.|+.||..++++++++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--------~~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--------RKNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--------CCCeeeHHHHHHHHHHcCCHHH
Confidence 7899999999999999999999999999999999999999999999985 5799999999999999999999
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|.
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP 489 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999986 6999999999999999999999999999998874
Q ss_pred hcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCC-CHHHHHHHHHHHhh--cHHHHHHHHH
Q 008265 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP-TTTTYNILMKACCT--DYYRVKALMN 537 (572)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~a~~~--~~~~a~~~~~ 537 (572)
.. ++. ..+................ ..+. .+..++.| +..+|+.|+..|++ ++++|.++++
T Consensus 490 ~~---p~~-~~~~~Ll~a~~~~g~~~~a-----------~~~~--~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 490 FK---PTV-NMWAALLTACRIHKNLELG-----------RLAA--EKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred CC---CCH-HHHHHHHHHHHHcCCcHHH-----------HHHH--HHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 22 111 1111111111110000000 0001 11234556 46799999999997 6799999999
Q ss_pred HHHhCCCC
Q 008265 538 EMRTVGLS 545 (572)
Q Consensus 538 ~m~~~g~~ 545 (572)
+|.+.|+.
T Consensus 553 ~m~~~g~~ 560 (697)
T PLN03081 553 TLKRKGLS 560 (697)
T ss_pred HHHHcCCc
Confidence 99999975
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=9.8e-23 Score=225.30 Aligned_cols=465 Identities=12% Similarity=0.065 Sum_probs=339.6
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (572)
+.+.+...|.. ......++..+.+.|++++|.++++.+....+.. ...+..+...+...|++++|...|++
T Consensus 420 ~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 420 LETAAQLDPEL-GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN--------ASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred HHHHHhhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--------cHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44444555554 4566677888889999999999999988764321 23355566678889999999999998
Q ss_pred hhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC-
Q 008265 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (572)
Q Consensus 139 m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~- 217 (572)
+.+. .|+.. ..+..+.. .+...|++++|...++.+.+. .|.+...+..+...+.+.|+.++|...++.+
T Consensus 491 a~~~--~~~~~---~~~~~la~---~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 491 ALSI--EPDFF---PAAANLAR---IDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHhh--CCCcH---HHHHHHHH---HHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8775 34322 12222222 234478999999999998865 3566677888899999999999999888765
Q ss_pred ---CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008265 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (572)
Q Consensus 218 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 294 (572)
|.+...+..++..+.+.|++++|..+++.+.+. .+.+...|..+..+|.+.|++++|...|+.+.+.. +.+...+
T Consensus 561 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 561 ELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALAL 638 (899)
T ss_pred HhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 444467778889999999999999999998765 34567788999999999999999999999988753 2345556
Q ss_pred HHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 295 NSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (572)
Q Consensus 295 ~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 372 (572)
..+..++ .|++++|...++++.+... .+..++..+...+...|++++|..+++.+... .+.+...+..+...
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~ 712 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ-----HPKAALGFELEGDL 712 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcCChHHHHHHHHH
Confidence 6665554 4889999999999887543 35778888899999999999999999988763 24566788888888
Q ss_pred HHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHH
Q 008265 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (572)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 452 (572)
+.+.|++++|.+.|+.+... .|+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A 789 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKA 789 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999998887 4555777888889999999999999999988764 55778888888899999999999
Q ss_pred HHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCC-CHHHHHHHHHHHhh--cH
Q 008265 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP-TTTTYNILMKACCT--DY 529 (572)
Q Consensus 453 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~a~~~--~~ 529 (572)
.++|+++.+..+..+.. ............. . ..+....+.....| +..++..+...+.. +.
T Consensus 790 ~~~~~~~~~~~p~~~~~--~~~l~~~~~~~~~---~-----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 790 IKHYRTVVKKAPDNAVV--LNNLAWLYLELKD---P-----------RALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHHHHhCCCCHHH--HHHHHHHHHhcCc---H-----------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 99999987654321110 0000000000000 0 00000001111223 44556666666654 67
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCccccccc
Q 008265 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 530 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
++|..+++++.+.+. .+..++..+..++.+.|++++|.++
T Consensus 854 ~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 854 DRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999764 3888999999999999999999875
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=9.7e-22 Score=217.38 Aligned_cols=466 Identities=13% Similarity=0.058 Sum_probs=352.2
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (572)
+.+.+...|+. ...+..+...+...|++++|.+.|+.+.+...... .....++..+.+.|++++|+.+++.
T Consensus 386 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~ 456 (899)
T TIGR02917 386 LAKATELDPEN-AAARTQLGISKLSQGDPSEAIADLETAAQLDPELG--------RADLLLILSYLRSGQFDKALAAAKK 456 (899)
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcch--------hhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44444555654 67888889999999999999999999988754422 2233456678899999999999999
Q ss_pred hhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC-
Q 008265 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (572)
Q Consensus 139 m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~- 217 (572)
+... .|+.. ..+..+..+ +...|++++|...|+++.+. .|.+...+..+...+...|++++|.+.++.+
T Consensus 457 ~~~~--~~~~~---~~~~~l~~~---~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 457 LEKK--QPDNA---SLHNLLGAI---YLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHh--CCCCc---HHHHHHHHH---HHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9875 33321 133333333 34579999999999998864 4666777888999999999999999998875
Q ss_pred ---CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008265 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (572)
Q Consensus 218 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 294 (572)
|.+..++..+...+.+.|+.++|..+++.+.+.+ +.+...+..+...|.+.|++++|..+++.+.+.. +.+...|
T Consensus 527 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 604 (899)
T TIGR02917 527 TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAW 604 (899)
T ss_pred HhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 5556788899999999999999999999998764 3466788889999999999999999999998753 4566778
Q ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 295 NSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (572)
Q Consensus 295 ~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 372 (572)
..+..++. |++++|...|+.+.+... .+...+..+..++.+.|++++|..+|+.+.+. .+.+...+..++..
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALEL-----KPDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHH
Confidence 87777654 899999999999987653 36778889999999999999999999999863 24457799999999
Q ss_pred HHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHH
Q 008265 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (572)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 452 (572)
+...|++++|.++++.+.+.+. .+...+..+...+...|++++|.+.|+.+... .|+..++..+..++.+.|++++|
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998753 46678888999999999999999999999887 45557888899999999999999
Q ss_pred HHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhhcH-HH
Q 008265 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY-YR 531 (572)
Q Consensus 453 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~~~-~~ 531 (572)
.+.++++.+........ ................. ...++.+... ...+...++.+...+.+.+ .+
T Consensus 756 ~~~~~~~l~~~~~~~~~--~~~la~~~~~~g~~~~A-----------~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~ 821 (899)
T TIGR02917 756 VKTLEAWLKTHPNDAVL--RTALAELYLAQKDYDKA-----------IKHYRTVVKK-APDNAVVLNNLAWLYLELKDPR 821 (899)
T ss_pred HHHHHHHHHhCCCCHHH--HHHHHHHHHHCcCHHHH-----------HHHHHHHHHh-CCCCHHHHHHHHHHHHhcCcHH
Confidence 99999988754321110 00000000000000000 0011111111 1346777887777776522 67
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCccccccc
Q 008265 532 VKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 532 a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
|..++++..+. .| +..++..+..+|.+.|++++|.++
T Consensus 822 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 822 ALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred HHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888764 34 345677788888889999888764
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=2.2e-19 Score=178.00 Aligned_cols=282 Identities=12% Similarity=0.085 Sum_probs=201.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
.++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++++|..+|+++.+.. +.+..+++.+.
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la 148 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLL 148 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 4556666666667777777777766665422221 2355666667777777777777777776542 23445555555
Q ss_pred HHhc--CChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 299 NVNA--HDLKFTLEVYKNMQKLGVMADM----ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (572)
Q Consensus 299 ~~~~--~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 372 (572)
..+. |++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...|+++.+. .+.+...+..+...
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~ 223 (389)
T PRK11788 149 EIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-----DPQCVRASILLGDL 223 (389)
T ss_pred HHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-----CcCCHHHHHHHHHH
Confidence 5443 6677777777777665433221 23456677788899999999999998863 13345677888889
Q ss_pred HHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHH
Q 008265 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (572)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 452 (572)
+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+. .|+...+..+...+.+.|++++|
T Consensus 224 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 224 ALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999887643323466788899999999999999999998876 46666778888899999999999
Q ss_pred HHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh-----
Q 008265 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT----- 527 (572)
Q Consensus 453 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~----- 527 (572)
..+++++.+ ..|+..+++.++..+..
T Consensus 302 ~~~l~~~l~-------------------------------------------------~~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 302 QALLREQLR-------------------------------------------------RHPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHHHHH-------------------------------------------------hCcCHHHHHHHHHHhhhccCCc
Confidence 999988764 25888888888877663
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCccc
Q 008265 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566 (572)
Q Consensus 528 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 566 (572)
+.+++..++++|.+.++.|++. .+|.++|...+
T Consensus 333 ~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~~ 365 (389)
T PRK11788 333 RAKESLLLLRDLVGEQLKRKPR------YRCRNCGFTAR 365 (389)
T ss_pred cchhHHHHHHHHHHHHHhCCCC------EECCCCCCCCc
Confidence 4568889999999888777766 34666666543
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=7.2e-18 Score=167.11 Aligned_cols=297 Identities=13% Similarity=0.064 Sum_probs=203.4
Q ss_pred hhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHh
Q 008265 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (572)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 202 (572)
+...|++++|+..|+++.+. .|+.. ..+..+.. .+...|++++|+.+++.+......+... .
T Consensus 45 ~~~~~~~~~A~~~~~~al~~--~p~~~---~~~~~la~---~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~--------- 106 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV--DPETV---ELHLALGN---LFRRRGEVDRAIRIHQNLLSRPDLTREQ-R--------- 106 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc--CcccH---HHHHHHHH---HHHHcCcHHHHHHHHHHHhcCCCCCHHH-H---------
Confidence 44667777777777777765 34321 12222222 2234677777777777776653222110 0
Q ss_pred cCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (572)
Q Consensus 203 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 282 (572)
...+..+...|.+.|++++|..+|+.+.+.. ..+..+++.++..+.+.|++++|.+.++.+
T Consensus 107 ------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 107 ------------------LLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred ------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 0245566667777777777777777776542 235567777777777777777777777777
Q ss_pred HhCCCCCCH----HHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 008265 283 RSQNVTLNI----YVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (572)
Q Consensus 283 ~~~g~~p~~----~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 356 (572)
.+.+..++. ..+..+...+ .+++++|...|+++.+... .+...+..+...+.+.|++++|.++|+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 243 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQ--- 243 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 665432221 1222232222 3677777777777766432 24556777888899999999999999998863
Q ss_pred CCCCCC--HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 008265 357 GVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (572)
Q Consensus 357 ~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 434 (572)
.|+ ..+++.++.+|.+.|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..
T Consensus 244 ---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~ 316 (389)
T PRK11788 244 ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLR 316 (389)
T ss_pred ---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHH
Confidence 233 356788889999999999999999998876 466667788899999999999999999988876 68888
Q ss_pred HHHHHHHHHHH---hCCHhHHHHHHHHhhhcccccc
Q 008265 435 CCNILLQACVE---ACQFDRAFRLFRSWTLSKTQVA 467 (572)
Q Consensus 435 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~ 467 (572)
+++.++..+.. .|+.+++..++++|.+.++.++
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 88888887765 5588899999999988776554
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=1e-17 Score=158.62 Aligned_cols=367 Identities=14% Similarity=0.110 Sum_probs=307.8
Q ss_pred hhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhh
Q 008265 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (572)
Q Consensus 61 ~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~ 140 (572)
..++..|.- ..+|..+...+-..|++++|+++++.+++.. |+ -.+++..+..++...|+.+.|...|.+..
T Consensus 107 ~a~r~~~q~-ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~------fida~inla~al~~~~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 107 LAIRKNPQG-AEAYSNLANILKERGQLQDALALYRAAIELK--PK------FIDAYINLAAALVTQGDLELAVQCFFEAL 177 (966)
T ss_pred hhhhccchH-HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--ch------hhHHHhhHHHHHHhcCCCcccHHHHHHHH
Confidence 334444554 7899999999999999999999999999884 43 26678888889999999999999999888
Q ss_pred hcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC-
Q 008265 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR- 219 (572)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 219 (572)
+. .|+.....+-...++++ .|++++|...+.+..+. .|.-.+.|+.|.-.+-.+|+.-.|+..|.+...
T Consensus 178 ql--nP~l~ca~s~lgnLlka------~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 178 QL--NPDLYCARSDLGNLLKA------EGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred hc--CcchhhhhcchhHHHHh------hcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 75 67766555555555553 69999999999887764 566678899999999999999999999887522
Q ss_pred ---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 008265 220 ---ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVF 294 (572)
Q Consensus 220 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~ 294 (572)
-...|-.|...|...+.++.|...|.+.... .|+ ...+..+...|-..|.+|.|++.|++..+. .|+ ...|
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay 323 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAY 323 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHH
Confidence 2378999999999999999999999887764 344 567888888899999999999999999876 565 5788
Q ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 008265 295 NSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVK 371 (572)
Q Consensus 295 ~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~li~ 371 (572)
+.+-.+.. |+..+|.+.+.+....... .....+.|...|...|.+++|..+|....+ +.|.. ..++.|..
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~------v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE------VFPEFAAAHNNLAS 396 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh------hChhhhhhhhhHHH
Confidence 98888865 8999999999999886433 467789999999999999999999999987 45654 47899999
Q ss_pred HHHccccHHHHHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCH
Q 008265 372 VFADAKWWQMALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQF 449 (572)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 449 (572)
.|-..|++++|+.-+++...- .|+- ..|+.+-..|...|+++.|.+.+.+.... .|. ...++.|...|-..|++
T Consensus 397 i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCc
Confidence 999999999999999998875 6654 67899999999999999999999998875 454 46789999999999999
Q ss_pred hHHHHHHHHhhh
Q 008265 450 DRAFRLFRSWTL 461 (572)
Q Consensus 450 ~~A~~~~~~m~~ 461 (572)
.+|+.-|++..+
T Consensus 473 ~~AI~sY~~aLk 484 (966)
T KOG4626|consen 473 PEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHHc
Confidence 999999988764
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.81 E-value=2.3e-15 Score=167.64 Aligned_cols=418 Identities=10% Similarity=0.013 Sum_probs=300.6
Q ss_pred HHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh---hh--
Q 008265 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF---DG-- 152 (572)
Q Consensus 78 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~-- 152 (572)
...+...|++++|+..|++.++..+. . ..++..+...+.+.|++++|+..|++..+.. |+... +.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~--~------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~l 345 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK--D------SEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESL 345 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHH
Confidence 45567789999999999999987443 1 4456667778899999999999999988763 33210 00
Q ss_pred ---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHH
Q 008265 153 ---SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFC 225 (572)
Q Consensus 153 ---~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~ 225 (572)
..+..++.....+.+.|++++|+..|++..+. .|.+...+..+...+...|++++|++.|+.. |.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 01122222223345689999999999999875 5667677888999999999999999998875 44556667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHLSS--------PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNS 296 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ 296 (572)
.+...|. .++.++|..+++.+...... .....+..+...+...|++++|.+.|++..+. .|+ ...+..
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~ 500 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYR 500 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 7777774 46789999988765432100 11234556777888999999999999999876 454 334444
Q ss_pred HHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC---------HHH
Q 008265 297 LMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---------VFT 365 (572)
Q Consensus 297 ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---------~~~ 365 (572)
+...+ .|++++|...++++.+.... +...+..+...+...++.++|...++.+.... ..++ ...
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~----~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ----WNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh----cChhHHHHHHHHhhhH
Confidence 44443 48999999999999875432 44455555556778899999999988764310 1111 112
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008265 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (572)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 445 (572)
+..+...+...|+.++|+++++. ...+...+..+...+.+.|+.++|++.|++..+.. +.+...+..+...+..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33456778889999999999882 23455667788899999999999999999999874 4467889999999999
Q ss_pred hCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCC-CHHHHHHHHHH
Q 008265 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP-TTTTYNILMKA 524 (572)
Q Consensus 446 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~a 524 (572)
.|+.++|.+.++...+. .| +..++..+-.+
T Consensus 650 ~g~~~eA~~~l~~ll~~-------------------------------------------------~p~~~~~~~~la~~ 680 (1157)
T PRK11447 650 QGDLAAARAQLAKLPAT-------------------------------------------------ANDSLNTQRRVALA 680 (1157)
T ss_pred CCCHHHHHHHHHHHhcc-------------------------------------------------CCCChHHHHHHHHH
Confidence 99999999999976542 22 33445545555
Q ss_pred Hhh--cHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHccCCccccccc
Q 008265 525 CCT--DYYRVKALMNEMRTVGL--SP---NHISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 525 ~~~--~~~~a~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
+.. +.++|.++++.+....- .| +...+..+...+...|++++|++.
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 543 67899999999886431 22 234666677888899999998764
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.80 E-value=8.5e-15 Score=163.07 Aligned_cols=377 Identities=9% Similarity=0.044 Sum_probs=278.1
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChh---HHHhHHHH---HHHhhhhHhhhhhCChhHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVS---KFASMLSL---EMVASGIVKSIREGRIDCV 132 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~~~---~~~~~~~~~~~~~g~~~~A 132 (572)
+.+.+...|+. ...+..+...+.+.|++++|+..|++..+..++.. .+..++.. .........+.+.|++++|
T Consensus 292 l~~aL~~~P~~-~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA 370 (1157)
T PRK11447 292 LQQAVRANPKD-SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA 370 (1157)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence 44555666765 68888999999999999999999999988754321 12222211 1112234457789999999
Q ss_pred HHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHH
Q 008265 133 VGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212 (572)
Q Consensus 133 ~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 212 (572)
+..|++..+. .|+.. ..+..+.. .+...|++++|++.|++..+. .|.+...+..+...+. .++.++|+.
T Consensus 371 ~~~~~~Al~~--~P~~~---~a~~~Lg~---~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~A~~ 439 (1157)
T PRK11447 371 ERLYQQARQV--DNTDS---YAVLGLGD---VAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEKALA 439 (1157)
T ss_pred HHHHHHHHHh--CCCCH---HHHHHHHH---HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHHHHH
Confidence 9999999886 45432 12222222 334589999999999999875 4566566767777764 467899999
Q ss_pred hhhcCCCch-------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 008265 213 YACIVPRAD-------------ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279 (572)
Q Consensus 213 ~~~~~~~~~-------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 279 (572)
+++.++... ..+..+...+...|++++|.+.|++..+..+. +...+..+...|.+.|++++|...|
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988775432 23445677888999999999999999886432 5667788889999999999999999
Q ss_pred HHHHhCCCCCC-HHH-HH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHHcCChHHHHHHH
Q 008265 280 EDLRSQNVTLN-IYV-FN-SLMNVNAHDLKFTLEVYKNMQKLGVMADMA---------SYNILLKACCLAGNTVLAQEIY 347 (572)
Q Consensus 280 ~~m~~~g~~p~-~~~-~~-~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~---------~~~~ll~~~~~~g~~~~a~~~~ 347 (572)
+++.+.. |+ ... |. .++....++.++|+..++.+......++.. .+..+...+...|+.++|.+++
T Consensus 519 ~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 519 RRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 9998753 32 222 22 222234578999999988765432222221 2234567788999999999998
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
+. .+.+...+..+...+.+.|++++|++.|++..+.... +...+..+...|...|+.++|.+.++...+.
T Consensus 597 ~~---------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 597 RQ---------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred Hh---------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 72 2456667788899999999999999999999987432 5678899999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 428 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
. +.+..++..+..++...|++++|.++++++..
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 2 33456677788889999999999999998865
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=4.8e-15 Score=154.27 Aligned_cols=356 Identities=10% Similarity=0.013 Sum_probs=262.3
Q ss_pred HhhcCChhHHHHHHHHHHhhcCC-hhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHH
Q 008265 81 LAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (572)
Q Consensus 81 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~ 159 (572)
+.+..+|+...-.|....+...+ .+. ..-+..++..+.+.|++++|+.+++...... |+.. ..+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~---~~l~~l~ 83 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGN------EQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGR---DLLRRWV 83 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhccc------ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCch---hHHHHHh
Confidence 34556666655555544433211 110 1113335666789999999999999888873 3321 1222222
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcC
Q 008265 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKR 235 (572)
Q Consensus 160 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g 235 (572)
.+. ...|++++|+..++++.+. .|.+...+..+...+...|++++|...++.. |.+...+..+...+...|
T Consensus 84 ~~~---l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g 158 (656)
T PRK15174 84 ISP---LASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD 158 (656)
T ss_pred hhH---hhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 222 2379999999999999874 5777788889999999999999999988774 555678888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHH
Q 008265 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYK 313 (572)
Q Consensus 236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~ 313 (572)
++++|...++.+......+ ...+..+ ..+...|++++|...++.+.+....++...+..+..+ ..|++++|...++
T Consensus 159 ~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~ 236 (656)
T PRK15174 159 KELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGE 236 (656)
T ss_pred ChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999887654433 3333333 3478899999999999998776433334444333333 3489999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHH
Q 008265 314 NMQKLGVMADMASYNILLKACCLAGNTVL----AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 389 (572)
+..+.+.. +...+..+...+...|++++ |...|+...+. .+.+...+..+...+.+.|++++|+..+++.
T Consensus 237 ~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 237 SALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99886543 57778888999999999986 78999998873 1345668899999999999999999999999
Q ss_pred HHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS-QCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 390 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+.... +...+..+..++.+.|++++|...++++.+. .|+. ..+..+..++...|+.++|...|++..+..
T Consensus 311 l~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 311 LATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 887432 4456777889999999999999999999876 4544 334445677899999999999999887654
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=4.4e-14 Score=147.61 Aligned_cols=393 Identities=11% Similarity=-0.023 Sum_probs=261.8
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhh
Q 008265 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (572)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 152 (572)
.+......+.+.|++++|+..|++.+...++| ..+..+...|...|++++|++.+.+..+. .|+.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~---------~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~---- 193 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP---------VYYSNRAACHNALGDWEKVVEDTTAALEL--DPDY---- 193 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCC----
Confidence 45567778888999999999999998775442 23556677889999999999999998876 4542
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc------------
Q 008265 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA------------ 220 (572)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------ 220 (572)
...+......+...|++++|+.-|......+- ........++..+........+...+..-+..
T Consensus 194 --~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 194 --SKALNRRANAYDGLGKYADALLDLTASCIIDG--FRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 12222323334457999999887765543321 11011111111111111111122222111111
Q ss_pred ---------------------hhHHHHHHHH---HHhcCCHHHHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhcCCHHH
Q 008265 221 ---------------------DILFCNFVRE---FGKKRDLVSALRAYDASKKHL-SSP-NMYICRTIIDVCGICGDYMK 274 (572)
Q Consensus 221 ---------------------~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~g~~~~ 274 (572)
...+..+... ....+++++|.+.|+...+.+ ..| ....|+.+...+...|++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~e 349 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLE 349 (615)
T ss_pred HccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Confidence 0111111111 123468899999999988764 223 45678888888899999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 275 SRAIYEDLRSQNVTLN-IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~-~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
|+..|++..+. .|+ ...|..+... ..|++++|...|++..+.... +...+..+...+...|++++|...|++..
T Consensus 350 A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 350 ALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998876 344 3344444333 448999999999998876433 57788888999999999999999999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008265 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431 (572)
Q Consensus 352 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 431 (572)
.+ .+.+...+..+...+.+.|++++|+..|++..+.. +-+...|+.+...+...|++++|.+.|++..+..-..
T Consensus 427 ~l-----~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 427 DL-----DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred Hc-----CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 73 13356678888889999999999999999988752 2246788889999999999999999999988653111
Q ss_pred -----CH-HHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchh
Q 008265 432 -----NS-QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505 (572)
Q Consensus 432 -----~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (572)
+. ..++.....+...|++++|.+++++....
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l------------------------------------------- 537 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII------------------------------------------- 537 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-------------------------------------------
Confidence 11 11222222344468999999999876542
Q ss_pred hhhcCCCC-CHHHHHHHHHHHhh--cHHHHHHHHHHHHhC
Q 008265 506 DKRFSFKP-TTTTYNILMKACCT--DYYRVKALMNEMRTV 542 (572)
Q Consensus 506 ~~~~~~~p-~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~ 542 (572)
.| +...+..+...+.. +.++|...|++..+.
T Consensus 538 ------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 538 ------DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred ------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 23 34467777777765 568999999888763
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=2.1e-14 Score=149.59 Aligned_cols=287 Identities=10% Similarity=-0.012 Sum_probs=232.5
Q ss_pred HhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHH
Q 008265 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSA 240 (572)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a 240 (572)
+.+.|++++|+.+++..... .|.....+..++.+....|++++|+..++.+ |.+...+..+...+.+.|++++|
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 34589999999999998875 4555667777888888999999999998875 66668889999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 008265 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (572)
Q Consensus 241 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~ 320 (572)
...++...+.. +.+...+..+...+...|++++|...++.+......+....+........|++++|...++.+.+...
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999998852 23567888899999999999999999998876643222222232222334899999999999887654
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH----HHHHHHHHHHCCCCC
Q 008265 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM----ALKVKEDMLSAGVTP 396 (572)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p 396 (572)
.++......+..++.+.|++++|...++.+.+. .+.+...+..+...+...|++++ |+..|++..+....
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~- 282 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALAR-----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD- 282 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-
Confidence 445555666678889999999999999999873 23456788889999999999986 89999999886332
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...|+++..
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55788999999999999999999999998864 33566778888999999999999999998865
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=8e-15 Score=139.29 Aligned_cols=379 Identities=14% Similarity=0.130 Sum_probs=291.7
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhH--------------HH------------hHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSK--------------FA------------SMLS 112 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--------------~~------------~~~~ 112 (572)
+++.+...+.. ......|.+..-+.|++.+|++.....-+....-.. +. ..--
T Consensus 37 v~qq~~~t~~~-~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ 115 (966)
T KOG4626|consen 37 VLQQFNKTHEG-SDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG 115 (966)
T ss_pred HHHHhccCCcc-chhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH
Confidence 45555555555 334667788888899999999887655443221000 00 0011
Q ss_pred HHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccc
Q 008265 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (572)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 192 (572)
.++++++...+-..|++++|+.+|+.+.+. .|+ ..+.++...+.+...|+.+.|...|.+.++. .|....
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~------fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~c 185 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPK------FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYC 185 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--Cch------hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhh
Confidence 456667777888889999999999999886 565 5566666666777789999999999887764 455444
Q ss_pred hHHHHHHHHhcCCChHHHHHhhhcCCC----chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHH
Q 008265 193 EEFRIVQLCVNKPDVNLAIRYACIVPR----ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCG 267 (572)
Q Consensus 193 ~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~ 267 (572)
..+.+.......|+.++|...+.+... -...|+.|.-.+-.+|+...|++-|++..+. .|+ ...|-.|-..|.
T Consensus 186 a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 186 ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK 263 (966)
T ss_pred hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH
Confidence 555566666678899999887766422 2378999999999999999999999998874 444 457888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 008265 268 ICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344 (572)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 344 (572)
..+.+++|...|.+.... .|+ ...+..+-..|- |..+.|+..+++..+.... -...|+.|..++-..|+..+|.
T Consensus 264 e~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred HHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHH
Confidence 999999999999887765 555 334444433443 7899999999999875332 3678999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHH
Q 008265 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEE 423 (572)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~ 423 (572)
+.|.+...+ .+......+.|...|...|.+++|..+|....+- .|.- ...+.|...|.+.|++++|+..+++
T Consensus 341 ~cYnkaL~l-----~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 341 DCYNKALRL-----CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHHHHHHh-----CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 999999884 2344568899999999999999999999998875 4443 5688999999999999999999999
Q ss_pred HHHcCCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 424 MLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 424 m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
..+- +|+ ...|+.+-..|-..|+.+.|.+.+.+...-
T Consensus 414 alrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 414 ALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 9874 676 478999999999999999999999887653
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=3.4e-13 Score=143.66 Aligned_cols=411 Identities=13% Similarity=0.043 Sum_probs=280.6
Q ss_pred hHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhh
Q 008265 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 151 (572)
..-.-.+......|+.++|++++.........+ ...+..+...+.+.|++++|..+|++..+. .|+...
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~--------a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~- 84 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHMQLP--------ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDD- 84 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH-
Confidence 444556667788999999999999988633222 334556667788999999999999998876 444321
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHH
Q 008265 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNF 227 (572)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l 227 (572)
....+.. .+.+.|+.++|+..++++.+. .|.+.. +..+..++...|+.++|+..++.+ |.+...+..+
T Consensus 85 --a~~~la~---~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~l 156 (765)
T PRK10049 85 --YQRGLIL---TLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEY 156 (765)
T ss_pred --HHHHHHH---HHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 1112222 334589999999999998875 566666 888889999999999999888764 5566677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCG-----ICGDY---MKSRAIYEDLRSQ-NVTLNIY 292 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~m~~~-g~~p~~~ 292 (572)
...+...|..+.|+..++.... .|+. .....+++... ..+++ ++|++.++.+.+. ...|+..
T Consensus 157 a~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~ 233 (765)
T PRK10049 157 VQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT 233 (765)
T ss_pred HHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 8888899999999998886654 2221 12222333322 22234 7788888888854 2233321
Q ss_pred -HHH-HH---HH--HhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH
Q 008265 293 -VFN-SL---MN--VNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364 (572)
Q Consensus 293 -~~~-~l---l~--~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 364 (572)
.+. .. +. ...++.++|+..|+.+.+.+.. |+. .-..+..+|...|++++|+.+|+++.+.. .........
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~ 311 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDE 311 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChH
Confidence 111 11 11 1237899999999999887632 332 22225678999999999999999987521 000001134
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCC-----------CCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGV-----------TPN---TITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 430 (572)
....+..++...|++++|.++++.+..... .|+ ...+..+...+...|+.++|+++++++.... +
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P 390 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-P 390 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 566677788999999999999999887521 122 1244567778889999999999999998763 5
Q ss_pred CCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcC
Q 008265 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510 (572)
Q Consensus 431 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (572)
-+...+..+...+...|++++|++.+++....
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l------------------------------------------------ 422 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVL------------------------------------------------ 422 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------------------------------------
Confidence 56788889999999999999999999987652
Q ss_pred CCCC-HHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008265 511 FKPT-TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC 558 (572)
Q Consensus 511 ~~p~-~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 558 (572)
.|| ...+-.....+.+ +.+.|+.+++++.+ ..|+......|-..+
T Consensus 423 -~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 423 -EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred -CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 454 3333333333333 78999999999988 457665544444433
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=5.5e-14 Score=127.95 Aligned_cols=320 Identities=14% Similarity=0.206 Sum_probs=239.7
Q ss_pred hhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHH-HHHHHHHHhCCCCCcccchHHHHHHHH
Q 008265 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMF-VGLMEVLEEFRLPVKELDEEFRIVQLC 201 (572)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~~ll~~~ 201 (572)
....|.+.++.-+|+.|.+.|+..+......+++++. -+ ...+..-| .+.|-.|...| .++..+|
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~----~~-Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW------- 190 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVT----YY-NSSNVPFAEWEEFVGMRNFG--EDSTSSW------- 190 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHH----hh-cCCCCcchhHHHHhhccccc--ccccccc-------
Confidence 5678889999999999999987766554444444432 22 12222211 22233343333 3334455
Q ss_pred hcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (572)
Q Consensus 202 ~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 281 (572)
+.|.+. .-+|+..|+.+.++..+|.++|+--..+.|.+++.+-.....+.+..+||.+|.+-.-. ...+++.+
T Consensus 191 -K~G~vA--dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~E 263 (625)
T KOG4422|consen 191 -KSGAVA--DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAE 263 (625)
T ss_pred -ccccHH--HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHH
Confidence 344444 47788899999999999999999999999999999998888889999999999864433 23789999
Q ss_pred HHhCCCCCCHHHHHHHHHHhc--CChH----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHH
Q 008265 282 LRSQNVTLNIYVFNSLMNVNA--HDLK----FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL-AQEIYGEVKHLE 354 (572)
Q Consensus 282 m~~~g~~p~~~~~~~ll~~~~--~~~~----~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~ 354 (572)
|....+.||..|+|+++.+.+ |+++ .|++++.+|++.|+.|...+|..+|..+++.++..+ +..+..++..--
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 999999999999999999855 6544 468899999999999999999999999998888755 444444443211
Q ss_pred HhCC-C----CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC----CCCc---hhhHHHHHHHHHHcCCHHHHHHHHH
Q 008265 355 AKGV-L----KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTPN---TITWSSLINACANAGLVEQAMHLFE 422 (572)
Q Consensus 355 ~~~~-~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~ 422 (572)
.|. + +.|..-|...|..|.+..+.+-|.++..-+.... +.|+ ...|..+....|+....+.....++
T Consensus 344 -tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 344 -TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred -ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121 2 2345567778888888888888888776665321 2222 2346677788888899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 423 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
.|.-.-+-|+..+...+++|..-.|.++-.-++|.+++..|-
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 999887889999999999999999999999999999987763
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.73 E-value=1.1e-13 Score=144.76 Aligned_cols=390 Identities=12% Similarity=-0.010 Sum_probs=262.7
Q ss_pred hhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHH
Q 008265 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (572)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 197 (572)
.....+.+.|++++|+..|++..+. .|+.. .+.-+.. .+.+.|++++|+..++..++. .|+....|..+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~----~~~n~a~---~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~ 200 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPV----YYSNRAA---CHNALGDWEKVVEDTTAALEL--DPDYSKALNRR 200 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchH----HHHHHHH---HHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHH
Confidence 3444578899999999999998875 56532 3322322 334579999999999998874 57777889999
Q ss_pred HHHHhcCCChHHHHHhhhcCC---C-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------------------
Q 008265 198 VQLCVNKPDVNLAIRYACIVP---R-ADILFCNFVREFGKKRDLVSALRAYDASKKH----------------------- 250 (572)
Q Consensus 198 l~~~~~~g~~~~a~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------------------- 250 (572)
..+|...|++++|+..|..+. . +......++..+........+...++.-...
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 999999999999988765431 1 1111111221111111111111111110000
Q ss_pred ----CCCCcH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCCCH-HHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 008265 251 ----LSSPNM-YICRTIIDV---CGICGDYMKSRAIYEDLRSQN-VTLNI-YVFNSLMNV--NAHDLKFTLEVYKNMQKL 318 (572)
Q Consensus 251 ----~~~~~~-~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~g-~~p~~-~~~~~ll~~--~~~~~~~a~~~~~~m~~~ 318 (572)
...+.. ..+..+... ....+++++|.+.|+...+.+ ..|+. ..|..+-.. ..|++++|+..+++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 000000 000000000 122368999999999998764 33433 334444333 348999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch
Q 008265 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (572)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 398 (572)
... +...|..+...+...|++++|...|+++.+. -+.+..+|..+...+...|++++|+..|++..+.... +.
T Consensus 361 ~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~ 433 (615)
T TIGR00990 361 DPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FI 433 (615)
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CH
Confidence 422 3567888888999999999999999999874 1345678999999999999999999999999887422 45
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHH
Q 008265 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478 (572)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 478 (572)
..+..+...+.+.|++++|...|++..+.. +.+...++.+...+...|++++|.+.|++........
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~------------ 500 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET------------ 500 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc------------
Confidence 677788889999999999999999998753 4457889999999999999999999999876532110
Q ss_pred HHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHH-HHHHHHHHHh--hcHHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 008265 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT-TYNILMKACC--TDYYRVKALMNEMRTVGLSPNH-ISWTIL 554 (572)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~ll~a~~--~~~~~a~~~~~~m~~~g~~p~~-~~~~~l 554 (572)
.+...+.. .++..+..+. ++.++|..++++.... .|+. ..+..+
T Consensus 501 ------------------------------~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~l 548 (615)
T TIGR00990 501 ------------------------------KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATM 548 (615)
T ss_pred ------------------------------ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 00111111 1222222222 3678999999998774 4654 578889
Q ss_pred HHHHHccCCccccccc
Q 008265 555 IDACGGSGNVEGALQC 570 (572)
Q Consensus 555 ~~~~~~~g~~~~a~~~ 570 (572)
...+...|++++|++.
T Consensus 549 a~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 549 AQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHccCHHHHHHH
Confidence 9999999999999764
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=2.2e-13 Score=145.09 Aligned_cols=377 Identities=11% Similarity=-0.045 Sum_probs=271.8
Q ss_pred CCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCC
Q 008265 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (572)
Q Consensus 66 ~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~ 145 (572)
.|.+ ...+..+...+...|++++|.++|+..++..+ +. ......+...+...|++++|+..+++..+. .
T Consensus 45 ~~~~-a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~ 113 (765)
T PRK10049 45 MQLP-ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP--QN------DDYQRGLILTLADAGQYDEALVKAKQLVSG--A 113 (765)
T ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 4444 56789999999999999999999999988743 32 222345666788999999999999999887 5
Q ss_pred CcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchh---
Q 008265 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI--- 222 (572)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--- 222 (572)
|+... +..+.. .+...|+.++|+..++++.+. .|.+...+..+..++...+..+.|++.++..+..+.
T Consensus 114 P~~~~----~~~la~---~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~ 184 (765)
T PRK10049 114 PDKAN----LLALAY---VYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKR 184 (765)
T ss_pred CCCHH----HHHHHH---HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHH
Confidence 65431 222222 234579999999999999875 567777777888889899999999999987765321
Q ss_pred -----HHHHHHHHHH-----hcCCH---HHHHHHHHHHHhc-CCCCcHH-HH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 223 -----LFCNFVREFG-----KKRDL---VSALRAYDASKKH-LSSPNMY-IC----RTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 223 -----~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-~~~~~~~-~~----~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|.+.|+.+.
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 1222333332 22234 7788888888754 2223221 11 111445567799999999999999
Q ss_pred hCCCC-CC-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh--
Q 008265 284 SQNVT-LN-IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-- 356 (572)
Q Consensus 284 ~~g~~-p~-~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-- 356 (572)
+.+.. |+ ...+...+....+++++|+..|+++.+..... .......+..++.+.|++++|.++++.+......
T Consensus 265 ~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~ 344 (765)
T PRK10049 265 AEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFL 344 (765)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceE
Confidence 87532 33 33444444456689999999999987653221 1345666777889999999999999999863100
Q ss_pred ---C--CCCCC---HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008265 357 ---G--VLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 357 ---~--~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 428 (572)
+ ...|+ ...+..+...+...|+.++|+++++++..... -+...+..+...+...|+.++|++.+++..+..
T Consensus 345 ~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 345 RLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred eecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 0 00123 23456677888899999999999999987632 356788899999999999999999999998863
Q ss_pred CCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 429 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
+-+...+......+.+.|++++|..+++++.+..+
T Consensus 424 -Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 424 -PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 33466777777789999999999999999987543
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=1.2e-11 Score=129.46 Aligned_cols=423 Identities=10% Similarity=0.041 Sum_probs=283.9
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhh
Q 008265 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (572)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 152 (572)
.|.. +-...+.|+++.|+..|++..+..+. . ......++..+...|+.++|+..+++... |+..
T Consensus 37 ~y~~-aii~~r~Gd~~~Al~~L~qaL~~~P~--~------~~av~dll~l~~~~G~~~~A~~~~eka~~----p~n~--- 100 (822)
T PRK14574 37 QYDS-LIIRARAGDTAPVLDYLQEESKAGPL--Q------SGQVDDWLQIAGWAGRDQEVIDVYERYQS----SMNI--- 100 (822)
T ss_pred HHHH-HHHHHhCCCHHHHHHHHHHHHhhCcc--c------hhhHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCC---
Confidence 3443 34577899999999999999987544 1 00111455566778999999999999873 3222
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc---hhHHHHHHH
Q 008265 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---DILFCNFVR 229 (572)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~li~ 229 (572)
.+..+......+...|++++|+++|+++.+. .|.+...+..++..+...++.++|++.+..+.+. ...+-.++.
T Consensus 101 -~~~~llalA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~lay 177 (822)
T PRK14574 101 -SSRGLASAARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSY 177 (822)
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHH
Confidence 2222222222334579999999999999875 4666677778889999999999999998886433 234444455
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------HHHHH-Hh-
Q 008265 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF------NSLMN-VN- 301 (572)
Q Consensus 230 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~------~~ll~-~~- 301 (572)
.+...++..+|++.++++.+.. +-+...+..++.++.+.|-...|+++..+-... +.+....+ ...++ +.
T Consensus 178 L~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhccc
Confidence 5555667767999999999874 235777888889999999999998777654322 11111111 11111 10
Q ss_pred -c----CC---hHHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 302 -A----HD---LKFTLEVYKNMQKL-GVMADM-A----SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (572)
Q Consensus 302 -~----~~---~~~a~~~~~~m~~~-~~~~~~-~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (572)
. ++ .+.|+.-++.+... +..|.. . ...-.+-++...|+..++++.|+.+.. .+ .+...++--
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~---~~-~~~P~y~~~ 331 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA---EG-YKMPDYARR 331 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh---cC-CCCCHHHHH
Confidence 0 11 34456666665542 222321 1 222345677888999999999998885 33 343456778
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHCC-----CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CC
Q 008265 368 TIVKVFADAKWWQMALKVKEDMLSAG-----VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC-----------EP 431 (572)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p 431 (572)
++.++|...+++++|+.+++.+.... ..++......|.-+|...+++++|..+++.+.+... .|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 88999999999999999999986643 122334457788899999999999999999987311 12
Q ss_pred C--H-HHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhh
Q 008265 432 N--S-QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (572)
Q Consensus 432 ~--~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (572)
| - ..+..++..+...|++.+|++.++++....
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------------------------------------------- 446 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------------------------------------------- 446 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------------
Confidence 2 2 234456667888999999999999886532
Q ss_pred cCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCccccccc
Q 008265 509 FSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN-HISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 509 ~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
.-|......+-+.+.. ...+|+..++.... +.|+ ..+......++...|+|++|.++
T Consensus 447 ---P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 447 ---PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 2255555555555554 46788888866665 3565 45666777778888888887543
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.64 E-value=2.5e-11 Score=129.80 Aligned_cols=171 Identities=6% Similarity=-0.085 Sum_probs=99.8
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (572)
+-+.+..+|+. ..++..+...|...|+.++|+..+++..+..+. ... .+ ..+ ...+++++|..++++
T Consensus 67 l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~--n~~------~~-~~L---a~i~~~~kA~~~ye~ 133 (987)
T PRK09782 67 FEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG--DAR------LE-RSL---AAIPVEVKSVTTVEE 133 (987)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHH------HH-HHH---HHhccChhHHHHHHH
Confidence 55566677887 888899999999999999999999999987442 111 11 111 122888888888888
Q ss_pred hhhcCCCCcchhhhh------------------------------------hhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 008265 139 LNELGVAPLELFDGS------------------------------------GFKLLKNECQRLLDSGEVEMFVGLMEVLE 182 (572)
Q Consensus 139 m~~~~~~p~~~~~~~------------------------------------~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 182 (572)
+... .|+..-... .+... ....+.+.|++++|++++.++.
T Consensus 134 l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~--~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 134 LLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTD--LLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHH--HHHHHHHHhCHHHHHHHHHHHH
Confidence 8776 333210000 11111 0111223466666666666666
Q ss_pred hCCCCCcccchHHHHHHHHhc-CCChHHHHHhhhcCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 183 EFRLPVKELDEEFRIVQLCVN-KPDVNLAIRYACIVP-RADILFCNFVREFGKKRDLVSALRAYDASKK 249 (572)
Q Consensus 183 ~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 249 (572)
+.+ |.+......|..+|.. .++ +++..+++... .+...+..+...|.+.|+.++|.+++.++..
T Consensus 210 k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 210 QQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred hcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 553 2222334445555555 244 55555544332 2345566666777777777777777766544
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=3.6e-11 Score=109.95 Aligned_cols=342 Identities=12% Similarity=0.111 Sum_probs=238.4
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhh
Q 008265 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (572)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 152 (572)
+=|.|+ .+...|.+.++.-+|+.|.+.|.+.+.-- ...+..++.-|....-.-.-++.|-.|...|-....
T Consensus 118 ~E~nL~-kmIS~~EvKDs~ilY~~m~~e~~~vS~kv----q~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~---- 188 (625)
T KOG4422|consen 118 TENNLL-KMISSREVKDSCILYERMRSENVDVSEKV----QLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTS---- 188 (625)
T ss_pred chhHHH-HHHhhcccchhHHHHHHHHhcCCCCCHHH----HHHHHHHHHhhcCCCCcchhHHHHhhcccccccccc----
Confidence 334443 35567899999999999999987543211 112223333333333333334556666555433211
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC-----chhHHHHH
Q 008265 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-----ADILFCNF 227 (572)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~l 227 (572)
+ -+.|.+.+ -+|+ +.|.+..++..+|.+.++--..+.|.++++.... ...+||.+
T Consensus 189 -s-----------WK~G~vAd--L~~E------~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~l 248 (625)
T KOG4422|consen 189 -S-----------WKSGAVAD--LLFE------TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGL 248 (625)
T ss_pred -c-----------cccccHHH--HHHh------hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhh
Confidence 1 12354443 3333 2467778899999999999889999988876422 23677877
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK----SRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 303 (572)
|.+-.- ....+++.+|....+.||..|+|+++.+..+.|+++. |++++.+|++-|+.|...+|..+|...++
T Consensus 249 I~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 249 IGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred hhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 765433 3337889999999999999999999999999998764 67888999999999999999999998774
Q ss_pred ChH---HHHHHHHHHHHc--C--C---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH---HHHHHH
Q 008265 304 DLK---FTLEVYKNMQKL--G--V---MA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV---FTYSTI 369 (572)
Q Consensus 304 ~~~---~a~~~~~~m~~~--~--~---~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~l 369 (572)
..+ .+..++.++... | . .| |..-|...+..|.+..+.+.|.++...+..-.....+.|+. .-|..+
T Consensus 325 e~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~ 404 (625)
T KOG4422|consen 325 ESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKF 404 (625)
T ss_pred cCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHH
Confidence 333 255555555432 2 2 22 44567788899999999999999888776421111133432 246677
Q ss_pred HHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 008265 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 447 (572)
....|.....+.-...++.|.-+-.-|+..+...++++..-.|.++-.-+++..+...|..-+...-.-++.-+++..
T Consensus 405 ~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 405 FDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 788888999999999999999888889999999999999999999999999999998875555444444444444433
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.56 E-value=3.2e-10 Score=121.43 Aligned_cols=354 Identities=12% Similarity=0.058 Sum_probs=235.2
Q ss_pred HHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhh
Q 008265 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (572)
Q Consensus 74 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 153 (572)
...++..+.+.++++.+.++.. ..|.... ...-.......+...++...+..|.+....-....+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~ 382 (987)
T PRK09782 316 VGATLPVLLKEGQYDAAQKLLA------TLPANEM-------LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQL 382 (987)
T ss_pred HHHHHHHHHhccHHHHHHHHhc------CCCcchH-------HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3344677778888886665532 1222111 10011122344566666666766766511111111222
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCC-CCcccchHHHHHHHHhcCCC---hHHHHHh----------------
Q 008265 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL-PVKELDEEFRIVQLCVNKPD---VNLAIRY---------------- 213 (572)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~---~~~a~~~---------------- 213 (572)
++ -..+.|+.++|..+|+......- ..-+......++..|.+.+. ...+..+
T Consensus 383 ~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 383 TW--------QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred HH--------HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 22 23347888888888887766311 10112234466777776655 2222222
Q ss_pred -------------hhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 008265 214 -------------ACIVPR--ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (572)
Q Consensus 214 -------------~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 278 (572)
+...|. ....|..+..++.. ++.++|...|...... .|+......+...+...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 222344 55677778777776 7888899988877664 35654444445555789999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 008265 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (572)
Q Consensus 279 ~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 356 (572)
|+++... .|+...+..+.. ...|+.++|...++...+.+.. +...+..+.......|++++|...+++..+
T Consensus 532 ~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---- 604 (987)
T PRK09782 532 WQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLN---- 604 (987)
T ss_pred HHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----
Confidence 9998665 333333333322 2348999999999999876522 333333444455566999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008265 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (572)
Q Consensus 357 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 436 (572)
..|+...|..+...+.+.|++++|+..+++....... +...++.+..++...|+.++|...+++..+.. +-+...+
T Consensus 605 --l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~ 680 (987)
T PRK09782 605 --IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALI 680 (987)
T ss_pred --hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 4678889999999999999999999999999887432 45677888889999999999999999998863 4467788
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 437 NILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
..+..++...|++++|...|++..+.
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999988754
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.56 E-value=2.7e-10 Score=119.52 Aligned_cols=365 Identities=11% Similarity=-0.002 Sum_probs=237.8
Q ss_pred HHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHH
Q 008265 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (572)
Q Consensus 78 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~ 157 (572)
...+...|++++|+++|+++.+..++ . ...+..++..+...++.++|++.++++... .|+.. .+..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~--n------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~----~~l~ 174 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT--N------PDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQ----NYMT 174 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC--C------HHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchH----HHHH
Confidence 45666667777777777777766432 1 122234455666777777777777777665 34322 1111
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc--hhH--------HHHH
Q 008265 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA--DIL--------FCNF 227 (572)
Q Consensus 158 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~--------~~~l 227 (572)
+.. .. ...++..+|++.++++.+. .|.+...+..+..+..+.|-...|+++...-|.- ... ....
T Consensus 175 lay--L~-~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 175 LSY--LN-RATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHH--HH-HhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHH
Confidence 111 11 1134554577777777764 4566666667777777777777777776654421 100 1111
Q ss_pred HHHH---H--hcC---CHHHHHHHHHHHHhc-CCCCcH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008265 228 VREF---G--KKR---DLVSALRAYDASKKH-LSSPNM-----YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293 (572)
Q Consensus 228 i~~~---~--~~g---~~~~a~~~~~~m~~~-~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 293 (572)
++.- . ... -.+.|+.-++.+... +..|.. ....-.+.++...|++.++.+.|+.|...|.+.....
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 1111 0 111 233455555555442 222322 2223456677888999999999999998886655667
Q ss_pred HHHHHHHhc--CChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh---------C
Q 008265 294 FNSLMNVNA--HDLKFTLEVYKNMQKLG-----VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK---------G 357 (572)
Q Consensus 294 ~~~ll~~~~--~~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---------~ 357 (572)
-..+..+|. +.+++|+.++..+.... ..++......|.-+|...+++++|..+++.+.+.... .
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 777777765 78999999999986643 1234444578889999999999999999999862110 0
Q ss_pred CCCCCHH-HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008265 358 VLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (572)
Q Consensus 358 ~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 436 (572)
...||-. .+..++..+.-.|++.+|++.++++..... -|......+...+...|...+|++.++...... +-+..+.
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~ 487 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILE 487 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHH
Confidence 1123333 344566778889999999999999977643 377888999999999999999999997776652 4456777
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 437 NILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.....++...+++++|..+.+.+....
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 788888899999999999988776543
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.54 E-value=2.2e-10 Score=115.45 Aligned_cols=369 Identities=13% Similarity=0.062 Sum_probs=232.2
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
+...+.|..-|.-.|++..++.+...+..... ...+..+.+..+.++|-..|++++|...|.+..+. .|+.++
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~ 342 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFV 342 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcc
Confidence 67778888888888999999999998887532 23334666778889999999999999999877665 444421
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCC----ChHHHHHhhhc----CCCchh
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP----DVNLAIRYACI----VPRADI 222 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~----~~~~~~ 222 (572)
.+. + -+- ..+.+.|+++.+...|+.+... .|++..+...|...|+..+ ..+.|..+... .|.+..
T Consensus 343 l~~-~-Glg---Qm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~ 415 (1018)
T KOG2002|consen 343 LPL-V-GLG---QMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSE 415 (1018)
T ss_pred ccc-c-chh---HHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHH
Confidence 111 1 111 1224489999999999999875 5677777777777777775 44555555444 344556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHH---
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDAS----KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ---NVTLNIY--- 292 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~--- 292 (572)
.|-.+...+-...-+.. +.+|... ...+-.+.....|.+...+...|++++|...|...... ...+|..
T Consensus 416 a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 416 AWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 66666666655444443 6666543 34555577888999999999999999999999888755 2233331
Q ss_pred ----HHHHHHHH-hcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 008265 293 ----VFNSLMNV-NAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (572)
Q Consensus 293 ----~~~~ll~~-~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (572)
-||.-..- ..++.+.|.+.|..+.+.. |. ...|--+..+....+...+|...++...... ..+...+
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-----~~np~ar 567 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-----SSNPNAR 567 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-----cCCcHHH
Confidence 23322111 2357788888888887653 22 2223333323333456667777777766531 3344455
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCC-CCCchhhHHHHHHHHHH------------cCCHHHHHHHHHHHHHcCCCCCH
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAG-VTPNTITWSSLINACAN------------AGLVEQAMHLFEEMLQAGCEPNS 433 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~~~~p~~ 433 (572)
+.+...+.+...+..|.+-|....+.- ..+|..+.-+|...|.+ .+..++|+++|.+..+.. +-|.
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~ 646 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNM 646 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchh
Confidence 555556666666666666555544331 12354444444443332 234566777777666553 3355
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 434 QCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
..-|-+.-.++..|++..|..+|.++.+.
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 55566666667777777777777776654
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=5.7e-11 Score=117.41 Aligned_cols=283 Identities=10% Similarity=-0.056 Sum_probs=209.4
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchh-HHHHHHHHHHhcCCHHHHH
Q 008265 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADI-LFCNFVREFGKKRDLVSAL 241 (572)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~-~~~~li~~~~~~g~~~~a~ 241 (572)
..|+++.|.+.+....+.. |.....+-....++.+.|+.+.|.+++... |.... +.-+....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3799999999998876643 333344555567788899999999998874 44432 3444688899999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCC-----hHHHHHHHHHHH
Q 008265 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD-----LKFTLEVYKNMQ 316 (572)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~a~~~~~~m~ 316 (572)
+.++.+.+..+ -+...+..+...+.+.|++++|.+++..+.+.++.+..........++.+. .+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999998753 356788899999999999999999999999987543332222222222221 222233444444
Q ss_pred HcCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccccHHHHHHHHHHHH
Q 008265 317 KLGV---MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 317 ~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
+... +.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+++.++...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 4322 137788889999999999999999999999873 344432 1222223344578899999998887
Q ss_pred HCCCCCch---hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 391 SAGVTPNT---ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 391 ~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
+. .|+. ....++.+.|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 327 k~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 327 KN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred Hh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76 4444 45668899999999999999999965544458999999999999999999999999998754
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=4.4e-09 Score=105.54 Aligned_cols=368 Identities=13% Similarity=0.074 Sum_probs=260.5
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
....-.....+.-.|+.++|.+++.++++..+. ....|..+...|-+.|+.+++...+-..-. +.|+..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~--------~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~- 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR--------NPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDY- 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc--------chhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCh-
Confidence 333333444444459999999999999988543 144466667778899999998877654433 455532
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhc----CCCch-----
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRAD----- 221 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~----- 221 (572)
..+...+....+.|++++|.-+|.+..+. .|.+....-.-...|-+.|+...|...|.+ +|+.+
T Consensus 208 -----e~W~~ladls~~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~ 280 (895)
T KOG2076|consen 208 -----ELWKRLADLSEQLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIE 280 (895)
T ss_pred -----HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHH
Confidence 33333333445689999999999998875 455555555567788899999999776555 45433
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF------ 294 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~------ 294 (572)
...-..++.+...++.+.|.+.++..... +-..+...++.++..|.+...++.|......+......+|..-|
T Consensus 281 d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~ 360 (895)
T KOG2076|consen 281 DLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERR 360 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhc
Confidence 33444678888889999999999877653 33445667889999999999999999999888773333332222
Q ss_pred ---------------------HHHHHHh-cCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008265 295 ---------------------NSLMNVN-AHDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEV 350 (572)
Q Consensus 295 ---------------------~~ll~~~-~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 350 (572)
..++... .+..+....+...+.+.. +.-+...|.-+..+|...|++.+|..+|..+
T Consensus 361 ~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 361 REEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred cccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2222211 133444444555555555 3345667889999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHH----
Q 008265 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEML---- 425 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~---- 425 (572)
.... ..-+...|--+..+|...|..+.|.+.+...... .|+ ...-.+|-..+.+.|+.++|.+.+..+.
T Consensus 441 ~~~~----~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 441 TNRE----GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred hcCc----cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 8632 2335779999999999999999999999999876 343 3444566777889999999999999954
Q ss_pred ----HcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 426 ----QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 426 ----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
..++.|+........+.+.+.|+.++=..+-..|...
T Consensus 515 ~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 515 RNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred cchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3345666666667777888899988766666666543
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=4e-10 Score=103.88 Aligned_cols=381 Identities=15% Similarity=0.163 Sum_probs=218.9
Q ss_pred HHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCccc-
Q 008265 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL- 191 (572)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 191 (572)
..+++++--.+.+.|+++.|+..|++..+. .||.. ..+++.+-+++. |+.+...+.|.+|......+++.
T Consensus 276 ikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~---a~~nl~i~~f~i----~d~ekmkeaf~kli~ip~~~dddk 346 (840)
T KOG2003|consen 276 IKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFI---AALNLIICAFAI----GDAEKMKEAFQKLIDIPGEIDDDK 346 (840)
T ss_pred HHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHH---hhhhhhhhheec----CcHHHHHHHHHHHhcCCCCCCccc
Confidence 445556666778888888888888877765 46532 355555443333 77777777788877643222211
Q ss_pred ------chHHHHHHHHhcCC--------ChHHHHH-------hhhcCCCch----hHH----------H--------HHH
Q 008265 192 ------DEEFRIVQLCVNKP--------DVNLAIR-------YACIVPRAD----ILF----------C--------NFV 228 (572)
Q Consensus 192 ------~~~~~ll~~~~~~g--------~~~~a~~-------~~~~~~~~~----~~~----------~--------~li 228 (572)
.....|+.-..++. +-..|.+ +..-+...+ .-| . .-.
T Consensus 347 yi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 347 YIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred ccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 00112222111111 1111111 111110000 000 0 012
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----Hhc
Q 008265 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTI--IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNA 302 (572)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~----~~~ 302 (572)
-.+.+.|+++.|.+++.-+.+..-+.-...-+.| ++.+.--.++..|.+.-+..... |.+.-.++.. +++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~----dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI----DRYNAAALTNKGNIAFA 502 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc----cccCHHHhhcCCceeee
Confidence 3456677777777777766554222111122222 22222223455555544444322 1111111211 122
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 303 -HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 303 -~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
|++++|.+.+++.....-......|+. --.+-..|++++|...|-.+... +..+..+...+...|....+...
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-----l~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-----LLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHhhCHHH
Confidence 678888888887776432222222322 22455678888888877766543 34566677777777877788888
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
|++++-+.... ++-|....+.|...|-+.|+..+|.+++.+--+. ++-+..|...|..-|....-+++|+.+|++..-
T Consensus 577 aie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 577 AIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 88877665543 3346677777888888888888887776654433 455777777777777777778888888876431
Q ss_pred cccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh---cHHHHHHHHHH
Q 008265 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---DYYRVKALMNE 538 (572)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~~a~~~~~~ 538 (572)
+.|+..-|..||..|.+ ++.+|.++++.
T Consensus 655 -------------------------------------------------iqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 655 -------------------------------------------------IQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred -------------------------------------------------cCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 57888899988888876 56888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCc
Q 008265 539 MRTVGLSPNHISWTILIDACGGSGNV 564 (572)
Q Consensus 539 m~~~g~~p~~~~~~~l~~~~~~~g~~ 564 (572)
..+. ++-|......|+..|...|..
T Consensus 686 ~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 686 IHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHh-CccchHHHHHHHHHhccccch
Confidence 7653 556777888888888777754
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=3.6e-10 Score=104.22 Aligned_cols=373 Identities=13% Similarity=0.124 Sum_probs=242.3
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch-
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL- 149 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~- 149 (572)
+.+.+.+--.+.+.|.+++|+..|++..+..++ +-+-.+++..+..-|+-++..+.|.+|...-..||..
T Consensus 276 ikil~nigvtfiq~gqy~dainsfdh~m~~~pn---------~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddk 346 (840)
T KOG2003|consen 276 IKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN---------FIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDK 346 (840)
T ss_pred HHHHhhcCeeEEecccchhhHhhHHHHHHhCcc---------HHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccc
Confidence 444555555678889999999999999887443 2223344555667788999999999998864333322
Q ss_pred -------hhhhhhHHHHHH--HHHHhhhh--hHHHHHHHHHHHHhCCCCCcccch--H------------------HHHH
Q 008265 150 -------FDGSGFKLLKNE--CQRLLDSG--EVEMFVGLMEVLEEFRLPVKELDE--E------------------FRIV 198 (572)
Q Consensus 150 -------~~~~~~~~l~~~--~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~--~------------------~~ll 198 (572)
.+..+++-.++- ...+-+.+ +.+.++-.--++..--+.|+-..- | ..-.
T Consensus 347 yi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 347 YIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred ccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 122222222210 11111111 111221111111111111110000 0 1123
Q ss_pred HHHhcCCChHHHHHhhhcCCCch-----hHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 008265 199 QLCVNKPDVNLAIRYACIVPRAD-----ILFCN--FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (572)
Q Consensus 199 ~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~--li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 271 (572)
..+.++|+++.|.+++..+...+ ..-+. .+..+--.+++..|.+.-+...... .-+......--.....+|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 45778999999999887764332 11222 2333333456778877776654321 1122222222223345689
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008265 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350 (572)
Q Consensus 272 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 350 (572)
+++|.+.|++.....-......||+-+.+.+ |++++|++.|-++...- .-+.....-+.+.|-...+...|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999999987744444556666666544 89999999998775421 225667777888899999999999999888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008265 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 430 (572)
..+ ++.|..+..-|...|-+.|+-..|.+.+-+--.. ++-+..+...|...|....-++++..+|++..- +.
T Consensus 585 ~sl-----ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 585 NSL-----IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred ccc-----CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 764 5677889999999999999999999887665443 344778889999999999999999999998754 48
Q ss_pred CCHHHHHHHHHHHH-HhCCHhHHHHHHHHhhhc
Q 008265 431 PNSQCCNILLQACV-EACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 431 p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~ 462 (572)
|+..-|..++..|. +.|++.+|+++|+++.+.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99999998888765 679999999999987653
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=1.6e-10 Score=113.58 Aligned_cols=278 Identities=14% Similarity=0.027 Sum_probs=210.1
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC---chhHHH--HHHHHHHhcCCHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR---ADILFC--NFVREFGKKRDLVSALR 242 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~--~li~~~~~~g~~~~a~~ 242 (572)
.|+++.|.+.+....+..- .....+.....+..+.|+++.|..++..+.+ +..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 6999999988887544321 1123333335555889999999999987633 222222 34778999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHh--cCChHHHHHHHH
Q 008265 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY-------VFNSLMNVN--AHDLKFTLEVYK 313 (572)
Q Consensus 243 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~--~~~~~~a~~~~~ 313 (572)
.++.+.+..+ -+...+..+...|.+.|++++|.+++..+.+.+..++.. .|..++... ..+.+...++++
T Consensus 175 ~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999988753 357788999999999999999999999999886543321 222223321 234555566666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC
Q 008265 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (572)
.+.+. .+.+......+..++...|+.++|.+++++..+ ..++... .++.+....++.+++++..+...+..
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~------~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK------RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC
Confidence 65432 244778888999999999999999999988875 2455532 23445556799999999999998873
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
.. |...+..+...|.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++-.
T Consensus 325 P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 325 GD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 5566888999999999999999999999986 7999999999999999999999999998653
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=1.6e-10 Score=113.55 Aligned_cols=280 Identities=12% Similarity=0.049 Sum_probs=176.2
Q ss_pred hhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchH-HHHHHHHhc
Q 008265 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE-FRIVQLCVN 203 (572)
Q Consensus 125 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~ll~~~~~ 203 (572)
..|+++.|...+....+..-.| .++.++.+.. ..+.|+.+.|...+.++.+. .|+..... ......+..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p-------~l~~llaA~a-A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQP-------VVNYLLAAEA-AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA 165 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccch-------HHHHHHHHHH-HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 3577777776666544432122 2222222111 13467777777777777653 22221111 122556667
Q ss_pred CCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcH-------HHHHHHHHHHHhcCCH
Q 008265 204 KPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM-------YICRTIIDVCGICGDY 272 (572)
Q Consensus 204 ~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~ 272 (572)
.|+++.|...++.+ |.+......+...|.+.|+++.|.+++..+.+.+..++. ..|..++.......+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 77777777765553 555677778888888888888888888888877554322 2344445544555556
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008265 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350 (572)
Q Consensus 273 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 350 (572)
+...++++.+.+. .+.+......+...+ .|+.++|..++.+..+. .++.... ++.+....++.+++.+..+..
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 6666666666433 123444444444443 47888888888877763 3344221 233334558888888888877
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
.+. .+-|...+.++...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 321 lk~-----~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQ-----HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred Hhh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 753 2345556778888888888888888888888886 67888888888888888888888888887653
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=3.4e-10 Score=100.07 Aligned_cols=292 Identities=12% Similarity=0.075 Sum_probs=218.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCch--------h
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--------I 222 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~ 222 (572)
|-..+|.++ .++.++|.++|-+|.+. .|.++.+..+|.+.|.+.|.+|.|+++++.+..++ .
T Consensus 39 Yv~GlNfLL--------s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~l 108 (389)
T COG2956 39 YVKGLNFLL--------SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLL 108 (389)
T ss_pred HHhHHHHHh--------hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHH
Confidence 334556665 48999999999999984 56677778899999999999999999998864432 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV----FNSLM 298 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~ll 298 (572)
....|..-|...|-++.|+.+|..+.+.+. .-......++..|-+..+|++|+++-+++.+.+-.+...- |--+-
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 455688999999999999999999987532 2345678899999999999999999999998754433221 11121
Q ss_pred HHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 008265 299 NVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFA 374 (572)
Q Consensus 299 ~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~ 374 (572)
... ..+.+.|..++.+..+.+.+ ....--.+.+.....|+++.|.+.++.+.+. .|+ ..+...|..+|.
T Consensus 188 q~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------n~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 188 QQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ------NPEYLSEVLEMLYECYA 260 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh------ChHHHHHHHHHHHHHHH
Confidence 111 14789999999999876533 2233334567788999999999999999873 344 347888999999
Q ss_pred ccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hCCHhH
Q 008265 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDR 451 (572)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~ 451 (572)
..|+.++.+..+..+.+.. +....-..+-..-....-.+.|..++.+-... +|+...+..+|+.-.. .|...+
T Consensus 261 ~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~ 336 (389)
T COG2956 261 QLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKE 336 (389)
T ss_pred HhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhh
Confidence 9999999999999998874 34444444445444555567777777776666 8999999999987644 345667
Q ss_pred HHHHHHHhhhccc
Q 008265 452 AFRLFRSWTLSKT 464 (572)
Q Consensus 452 A~~~~~~m~~~~~ 464 (572)
-..++++|....+
T Consensus 337 sL~~lr~mvge~l 349 (389)
T COG2956 337 SLDLLRDMVGEQL 349 (389)
T ss_pred hHHHHHHHHHHHH
Confidence 7777888876543
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=1.5e-12 Score=122.11 Aligned_cols=227 Identities=17% Similarity=0.111 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
..|..+...+...++++.|.+.++.+...+.. +...+..++.. ...+++++|.++++...+.. ++...+...+..+
T Consensus 45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~ 120 (280)
T PF13429_consen 45 EYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLY 120 (280)
T ss_dssp -----------------------------------------------------------------------------H-H
T ss_pred cccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHH
Confidence 34444555566667777777777777665433 44456666665 67777888887777665542 3444455555443
Q ss_pred --cCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccc
Q 008265 302 --AHDLKFTLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAK 377 (572)
Q Consensus 302 --~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 377 (572)
.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+++..+. .| |....+.++..+...|
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 121 YRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL------DPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp HHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHCTTC
T ss_pred HHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHCC
Confidence 367777777777766432 3457778888889999999999999999999884 45 4678889999999999
Q ss_pred cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 008265 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (572)
Q Consensus 378 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (572)
+.+++.+++....+.. ..|...|..+..+|...|+.++|..+|++..+.. +.|..+...+.+++...|+.++|.++.+
T Consensus 195 ~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 195 DYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred ChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 9999888888887764 3466778899999999999999999999998763 5578888899999999999999999987
Q ss_pred Hhh
Q 008265 458 SWT 460 (572)
Q Consensus 458 ~m~ 460 (572)
+..
T Consensus 273 ~~~ 275 (280)
T PF13429_consen 273 QAL 275 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 764
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.45 E-value=3e-09 Score=107.46 Aligned_cols=367 Identities=11% Similarity=0.090 Sum_probs=255.7
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...|-.+.+++-..|++++|...|.+..+. .++.|. + .+..+...+...|+++.+...|+++.+. .||..-
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~--l---~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~e 377 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFV--L---PLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYE 377 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcc--c---cccchhHHHHHhchHHHHHHHHHHHHHh--CcchHH
Confidence 456888899999999999999999887765 443321 1 1445677899999999999999999886 566442
Q ss_pred hhhhhHHHHHHHHHH-hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhc---------CCCc
Q 008265 151 DGSGFKLLKNECQRL-LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI---------VPRA 220 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~---------~~~~ 220 (572)
++.++-..+... ......+.|..++.+..+. .|.+...|..+...+....-+. ++.++.. .+..
T Consensus 378 ---tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip 451 (1018)
T KOG2002|consen 378 ---TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIP 451 (1018)
T ss_pred ---HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCC
Confidence 444444434343 2234568888888887764 3667777877777665544333 2444332 2333
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008265 221 DILFCNFVREFGKKRDLVSALRAYDASKKH---LSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (572)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 291 (572)
....|.+.......|++++|...|+..... ...++. .+--.+...+-..++.+.|.+.|..+.+. .|.-
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~Y 529 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGY 529 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--Cchh
Confidence 478999999999999999999999987654 122333 12223445556668999999999999876 3443
Q ss_pred -HHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 292 -YVFNSLMNVNA---HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (572)
Q Consensus 292 -~~~~~ll~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (572)
..|--+. +.+ +...+|...++...... ..++..++.+...+.+...|..|..-|....+.. . ..+|.+..-
T Consensus 530 Id~ylRl~-~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~-~--~~~D~Ysli 604 (1018)
T KOG2002|consen 530 IDAYLRLG-CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT-S--TKTDAYSLI 604 (1018)
T ss_pred HHHHHHhh-HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh-c--cCCchhHHH
Confidence 2333332 222 57888888888877643 2355556667777888888888888666665421 1 236777666
Q ss_pred HHHHHHHc------------cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008265 368 TIVKVFAD------------AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435 (572)
Q Consensus 368 ~li~~~~~------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 435 (572)
+|.+.|.. .+..++|+++|.+..+...+ |...-|.+.-.++..|++.+|..+|.++.+.. .-...+
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv 682 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDV 682 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCce
Confidence 66665432 34577899999988876433 66777788888889999999999999998764 334567
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 436 CNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
|..+..+|..+|++..|+++|+...+
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999987643
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=7.2e-10 Score=98.06 Aligned_cols=289 Identities=9% Similarity=0.049 Sum_probs=204.4
Q ss_pred cCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHH
Q 008265 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ 163 (572)
Q Consensus 84 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~ 163 (572)
+++.++|+.+|-+|.+. +|.++.. ...+...+-+.|..|+|+.+.+.+.+. ||.. +..-...+.....
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~------~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT-~~qr~lAl~qL~~ 115 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEA------HLTLGNLFRSRGEVDRAIRIHQTLLES---PDLT-FEQRLLALQQLGR 115 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHH------HHHHHHHHHhcchHHHHHHHHHHHhcC---CCCc-hHHHHHHHHHHHH
Confidence 46778888888888875 4544433 333445566788888888888887774 4432 3333333333444
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 243 (572)
.+...|-+|.|..+|..+.+.+... ......|+..|-+.++|++|.++
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa--------------------------------~~AlqqLl~IYQ~treW~KAId~ 163 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFA--------------------------------EGALQQLLNIYQATREWEKAIDV 163 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhh--------------------------------HHHHHHHHHHHHHhhHHHHHHHH
Confidence 4555777777777777766533211 13455688999999999999999
Q ss_pred HHHHHhcCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---hcCChHHHHHHHHHHH
Q 008265 244 YDASKKHLSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQ 316 (572)
Q Consensus 244 ~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~~a~~~~~~m~ 316 (572)
-+++.+.+..+. ...|.-+...+....+++.|..++.+..+. .|+.+--++++.- ..|+++.|.+.++...
T Consensus 164 A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 164 AERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 998888765543 235666777777778899999999998876 3555555555442 3389999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC
Q 008265 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (572)
Q Consensus 317 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 396 (572)
+.+...-..+...|..+|.+.|+.++....+..+.+ ..+....-..+-.--......+.|...+.+-... +|
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~------~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~P 313 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME------TNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KP 313 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CC
Confidence 887666677888999999999999999999999887 3556656666666656666777887777766665 79
Q ss_pred chhhHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 008265 397 NTITWSSLINACANA---GLVEQAMHLFEEMLQ 426 (572)
Q Consensus 397 ~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~ 426 (572)
+...+..+|..-... |...+-..++..|..
T Consensus 314 t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 314 TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 999999999876533 345566666666653
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=7.4e-10 Score=109.55 Aligned_cols=58 Identities=9% Similarity=0.010 Sum_probs=31.7
Q ss_pred HHHHHHHHHHccccHHHHHHHHH--HHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKE--DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~--~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
...++...+.+.|++++|.+.|+ ...+. .|+...+..+...+.+.|+.++|.+++++.
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~--~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKE--QLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555566666666555 33333 355555555555566666666665555554
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=7.7e-11 Score=114.14 Aligned_cols=273 Identities=13% Similarity=0.118 Sum_probs=206.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhcCChHH---HH
Q 008265 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN--VTLNIYVFNSLMNVNAHDLKF---TL 309 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~---a~ 309 (572)
-+.++|...|..+..+ +.-+..+...+-++|...+++++|.++|+.+.+.. ..-+...|.+.+....+..+. |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567888888886654 22234667788899999999999999999998762 122567888888766554332 23
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccccHHHHHHHHHH
Q 008265 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKED 388 (572)
Q Consensus 310 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (572)
++.+.+ +-.+.+|.++.++|...++.+.|++.|+...+ +.| ..++|+.+..-+.....+|.|...|+.
T Consensus 412 ~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 412 DLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ------LDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc------cCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 333322 23678999999999999999999999999987 456 678999999999999999999999999
Q ss_pred HHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccccccc
Q 008265 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468 (572)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 468 (572)
......+ +-..|..|.-.|.+.++++.|+-.|+...+-+ +-+.+....+...+-+.|+.|+|++++++....+.
T Consensus 481 Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~---- 554 (638)
T KOG1126|consen 481 ALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP---- 554 (638)
T ss_pred hhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC----
Confidence 8854221 33456667778999999999999999998765 45677778888889999999999999998754332
Q ss_pred ccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhhcHHHHHHHHHHHHhCCCCCCH
Q 008265 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNH 548 (572)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~~~~~a~~~~~~m~~~g~~p~~ 548 (572)
-.|-.....+.|--...+.++|...++++.+ +.|+.
T Consensus 555 ------------------------------------------kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~e 590 (638)
T KOG1126|consen 555 ------------------------------------------KNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQE 590 (638)
T ss_pred ------------------------------------------CCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcch
Confidence 1233344445555555688999999999988 67875
Q ss_pred -HHHHHHHHHHHccCCcccccc
Q 008265 549 -ISWTILIDACGGSGNVEGALQ 569 (572)
Q Consensus 549 -~~~~~l~~~~~~~g~~~~a~~ 569 (572)
..|-.+...|.+-|+.+.|+.
T Consensus 591 s~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 591 SSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHHHHHHHHHHHHHccchHHHH
Confidence 467777799999998887763
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=4e-10 Score=109.30 Aligned_cols=278 Identities=11% Similarity=0.036 Sum_probs=191.1
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC-------chhHHHHHHHHHHhcCCH-HH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-------ADILFCNFVREFGKKRDL-VS 239 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~li~~~~~~g~~-~~ 239 (572)
.-+..+|+.+|+.+.+. .+++......+..+|.+.+++++|+++|+.+.. .-.+|.+.+..+-+.-.. -.
T Consensus 332 ~y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 35778888888885443 344445556788888888888888888877532 226777776655332111 11
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhc--CChHHHHHHHHHHH
Q 008265 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMNVNA--HDLKFTLEVYKNMQ 316 (572)
Q Consensus 240 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~--~~~~~a~~~~~~m~ 316 (572)
|..+.+.. +-...+|.++-++|.-+++.+.|++.|++..+. .| ..++|+.+=+-+. ..+|.|...|+...
T Consensus 410 aq~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 410 AQDLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 22222222 224578888888888889999999998888875 34 4555655544332 57888888888876
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCC
Q 008265 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395 (572)
Q Consensus 317 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 395 (572)
....+ +-..|-.+...|.+.++++.|+-.|+.+.+ +.| +......+...+.+.|+.|+|++++++......+
T Consensus 483 ~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 483 GVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred cCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhc------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 53211 222344466678888899999888888876 344 4556677777888888999999999988876544
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 396 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
|..+--..+..+...++.++|+..++++++. .| +..+|..+...|-+.|+.+.|..-|.-+.+.+.
T Consensus 556 -n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 556 -NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred -CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 5555455666777778889999999988875 44 456677777888889999888888877765543
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.38 E-value=9.9e-08 Score=92.53 Aligned_cols=454 Identities=12% Similarity=0.051 Sum_probs=226.6
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcC-ChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 137 (572)
+.++++..|.. ..|.-+|++..-++.|..++....+.-+ +|. ++......--..|+.+....+.+
T Consensus 399 L~rAveccp~s-----~dLwlAlarLetYenAkkvLNkaRe~iptd~~---------IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 399 LERAVECCPQS-----MDLWLALARLETYENAKKVLNKAREIIPTDRE---------IWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred HHHHHHhccch-----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChh---------HHHHHHHHHHhcCCHHHHHHHHH
Confidence 44555555654 3344556667777778888877776532 222 22222222234555555555543
Q ss_pred Hh----hhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcc-cchHHHHHHHHhcCCChHHHHH
Q 008265 138 KL----NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE-LDEEFRIVQLCVNKPDVNLAIR 212 (572)
Q Consensus 138 ~m----~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~ 212 (572)
+- ...|+.-+. +.+++-....-+.|..--+..+.......|+...+ ..+|..-.+.|...+.++-|..
T Consensus 465 rgl~~L~~ngv~i~r-------dqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 465 RGLSELQANGVEINR-------DQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHhhcceeecH-------HHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 32 233444322 12222222222345555555555555544443222 3456666666666666666655
Q ss_pred hhhc----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008265 213 YACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (572)
Q Consensus 213 ~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 288 (572)
+|.. .|.+...|..+...=-..|..++-..+|.+....-. -....|-....-+-..|+...|..++.+..+....
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 5433 344445666666665666666666666666655422 23344555555555566666666666666554211
Q ss_pred CCHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH-H
Q 008265 289 LNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-T 365 (572)
Q Consensus 289 p~~~~~~~ll~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~ 365 (572)
+...|-.-+. .-...++.|..+|.+.... .|+...|.--+..---.++.++|.+++++..+ .-|+-. .
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk------~fp~f~Kl 687 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK------SFPDFHKL 687 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH------hCCchHHH
Confidence 2333333333 2334566666666655542 34444554444444455666666666666554 233333 5
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
|-.+...+-+.++++.|.+.|..-.+. -|+. -.|-.|...=-+.|.+-+|..+++...-.+ +-+...|...|+.=.
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMEL 764 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHH
Confidence 555555666666666666666554433 2333 344444444455556666666666665544 345556666666666
Q ss_pred HhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHH
Q 008265 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (572)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a 524 (572)
+.|+.+.|..++.+..+.-........ +.+........ ....-+.++++ ..|....-++-..
T Consensus 765 R~gn~~~a~~lmakALQecp~sg~LWa-----EaI~le~~~~r-----------kTks~DALkkc--e~dphVllaia~l 826 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQECPSSGLLWA-----EAIWLEPRPQR-----------KTKSIDALKKC--EHDPHVLLAIAKL 826 (913)
T ss_pred HcCCHHHHHHHHHHHHHhCCccchhHH-----HHHHhccCccc-----------chHHHHHHHhc--cCCchhHHHHHHH
Confidence 666666666655544432211100000 00000000000 00000111222 2333333333333
Q ss_pred Hh--hcHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCccc
Q 008265 525 CC--TDYYRVKALMNEMRTVGLSPNH-ISWTILIDACGGSGNVEG 566 (572)
Q Consensus 525 ~~--~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 566 (572)
+- +..+.|.+.|.+..+. .||. .+|.-+..-+..+|.-++
T Consensus 827 fw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHH
Confidence 32 3568888888888774 4654 577777777788885443
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.2e-08 Score=92.06 Aligned_cols=279 Identities=11% Similarity=0.102 Sum_probs=195.0
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHH--HHHHHHhcCCHHHHHHH
Q 008265 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN--FVREFGKKRDLVSALRA 243 (572)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~ 243 (572)
.+.|..+.|+..|...... -|.....|..| ..-..+.+.+..+....+.+...+.. +..++-...+.+++..-
T Consensus 175 k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL---~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 175 KELGLLSLAIDSFVEVVNR--YPWFWSAWLEL---SELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HhhchHHHHHHHHHHHHhc--CCcchHHHHHH---HHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888898888776542 34443344333 33334445544444444543222221 45666677788888888
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C-CCHHHHHHHHHHhcCChHH---HHHHHHHHHHc
Q 008265 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-T-LNIYVFNSLMNVNAHDLKF---TLEVYKNMQKL 318 (572)
Q Consensus 244 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~-p~~~~~~~ll~~~~~~~~~---a~~~~~~m~~~ 318 (572)
.+.....|+.-+...-+....+.-...++++|+.+|+++.+... . -|..+|+.++.+...+... |..+++ -.
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~---id 326 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN---ID 326 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH---hc
Confidence 88888888876665555556666788999999999999998721 1 2567888887765432222 222221 11
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc
Q 008265 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (572)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 397 (572)
+--+.|+..+.+-|+-.++.++|...|+...++ .|. ...|+.+..-|...++...|.+-++...+-... |
T Consensus 327 --KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-D 397 (559)
T KOG1155|consen 327 --KYRPETCCIIANYYSLRSEHEKAVMYFKRALKL------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-D 397 (559)
T ss_pred --cCCccceeeehhHHHHHHhHHHHHHHHHHHHhc------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-h
Confidence 223467788888888888888899999888873 444 457888888888888888999988888876433 7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
-..|-.|-++|.-.+...=|+-+|++..+.. +-|...|.+|.++|.+.++.++|.+.|.+....
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7888888889888888888888888887752 446788888888999999999998888876643
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.37 E-value=7.2e-12 Score=117.58 Aligned_cols=226 Identities=15% Similarity=0.179 Sum_probs=86.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hcCC
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAHD 304 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~ 304 (572)
+...+.+.|++++|+++++...... ...+...|..+...+-..++++.|.+.++++...+.. +...+..++.. ..++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQLLQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 4566677788888888886544432 2234445555566666778888888888888766432 34445555544 3467
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHH
Q 008265 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (572)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 384 (572)
+++|.+++....+.. ++...+..++..+.+.++++++..+++.+... ...+.+...|..+...+.+.|+.++|++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL---PAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH----T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 788887776654432 45556677777788888888888888887642 2134566777778888888888888888
Q ss_pred HHHHHHHCCCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 385 VKEDMLSAGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 385 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.+++..+. .| |....+.++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|...|++..+
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 88888776 44 45667778888888888888878777776653 44555677778888888888888888877654
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=3e-09 Score=97.19 Aligned_cols=281 Identities=15% Similarity=0.094 Sum_probs=149.0
Q ss_pred hhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcC
Q 008265 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (572)
Q Consensus 125 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 204 (572)
..|+|..|..+..+-.+.+-.| +++.++.+- .--..|+.+.+-.++.+..+.--. ++....-+........
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-------~l~~l~aA~-AA~qrgd~~~an~yL~eaae~~~~-~~l~v~ltrarlll~~ 166 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-------VLAYLLAAE-AAQQRGDEDRANRYLAEAAELAGD-DTLAVELTRARLLLNR 166 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-------HHHHHHHHH-HHHhcccHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHhC
Confidence 4455555555555554444333 333222211 112245555555555555432100 1111223334444555
Q ss_pred CChHHHHHhhhc----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcH-------HHHHHHHHHHHhcCCHH
Q 008265 205 PDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM-------YICRTIIDVCGICGDYM 273 (572)
Q Consensus 205 g~~~~a~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~ 273 (572)
|+.+.|..-.+. -|....+.....++|.+.|++.....+...|.+.|.--+. .+|+.+++-....+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 555555443332 2334456666677777777777777777777666654332 35666666555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 274 ~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
.-...++....+ .+-+...-..++. ..+|+.++|.++..+..+.+..|... ..-.+.+.++.+.-++..+...
T Consensus 247 gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 247 GLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred HHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHH
Confidence 544555554332 1122222222222 24466777777776666665555411 1223445556555555555544
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 352 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
+. .+-+...+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+++++...
T Consensus 322 ~~-----h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 322 KQ-----HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred Hh-----CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 32 2334456667777777777777777777765554 66777777777777777777777777776553
No 45
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=3.7e-12 Score=83.69 Aligned_cols=49 Identities=37% Similarity=0.676 Sum_probs=27.0
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 396 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 46
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=3.8e-12 Score=83.61 Aligned_cols=50 Identities=32% Similarity=0.543 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH
Q 008265 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (572)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (572)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998874
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.31 E-value=3.1e-08 Score=99.56 Aligned_cols=290 Identities=12% Similarity=0.129 Sum_probs=212.1
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhc----CCCchhHHHHHHHHHHhcCCHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRA 243 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~ 243 (572)
.|++++|.+++.++.+. .|.....|.+|...|-+.|+.+++...+-. -|.+...|..+.....+.|.++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 49999999999999875 577788999999999999999999886543 366668999999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc------CChHHHHHHHHHHHH
Q 008265 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------HDLKFTLEVYKNMQK 317 (572)
Q Consensus 244 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~------~~~~~a~~~~~~m~~ 317 (572)
|.+..+..+ ++...+---...|-+.|+...|..-|.++.....+.|..-+..++...+ ++.+.|.+.+.....
T Consensus 230 y~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999988743 3444555557788999999999999999998743334444444444322 345778777776655
Q ss_pred -cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH----------------------hC-CCCCCHHHHHHHHHHH
Q 008265 318 -LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA----------------------KG-VLKLDVFTYSTIVKVF 373 (572)
Q Consensus 318 -~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------------------~~-~~~~~~~~~~~li~~~ 373 (572)
.+-..+...++.++..+.+...++.+......+..... .| .+.++..+ --++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 22334566788888899999999988887777665110 00 02223333 1222334
Q ss_pred HccccHHHHHHHHHHHHHCCC--CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhH
Q 008265 374 ADAKWWQMALKVKEDMLSAGV--TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (572)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 451 (572)
.+.+..+....+.....+..+ .-+...|.-+..+|...|.+.+|..+|..+.....--+..+|--+..+|...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 444444555555555555543 334567888889999999999999999999876555567788999999999999999
Q ss_pred HHHHHHHhhh
Q 008265 452 AFRLFRSWTL 461 (572)
Q Consensus 452 A~~~~~~m~~ 461 (572)
|.+.|+....
T Consensus 468 A~e~y~kvl~ 477 (895)
T KOG2076|consen 468 AIEFYEKVLI 477 (895)
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.27 E-value=3.9e-07 Score=83.68 Aligned_cols=277 Identities=16% Similarity=0.060 Sum_probs=195.0
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC---ch--hHHHHHHHHHHhcCCHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR---AD--ILFCNFVREFGKKRDLVSALR 242 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~--~~~~~li~~~~~~g~~~~a~~ 242 (572)
.|+|.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+-++..+..+ ++ .+.-+..+.....|++..|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 799999999998866655333 34455556777788999999888877522 22 455667788888999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHhc--CChHHHHHHHH
Q 008265 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-------YVFNSLMNVNA--HDLKFTLEVYK 313 (572)
Q Consensus 243 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~--~~~~~a~~~~~ 313 (572)
-++.+.+.+.. +.........+|.+.|++.....++..|.+.|.--|. .+|+.++.-.. +..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99988887544 5667889999999999999999999999998865553 34555555333 22333233444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC-
Q 008265 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA- 392 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 392 (572)
.... ..+-++..-.+++.-+.++|+.++|.++..+..+.. -|.. -...-.+.+-++.+.-++..++-.+.
T Consensus 254 ~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~------~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 254 NQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ------WDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred hccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc------cChh--HHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 4433 355567777788888888888888888887776531 2222 12223455667777666666655443
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 393 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
+. +...+.+|-.-|.+.+.+.+|.+.|+...+. .|+..+|+.+.+++.+.|+..+|.+..++-.
T Consensus 325 ~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 325 PE--DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 33 3366777888888888888888888866654 7888888888888888888888888877644
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.1e-07 Score=88.58 Aligned_cols=252 Identities=12% Similarity=0.113 Sum_probs=190.1
Q ss_pred HHHHHhcCCChHHHHHhhhc-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHhc
Q 008265 197 IVQLCVNKPDVNLAIRYACI-----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS--SPNMYICRTIIDVCGIC 269 (572)
Q Consensus 197 ll~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~ 269 (572)
+..++.+....+++..-... ++.....-+....+.-...|++.|+.+|+++.+..+ --|..+|..++..--.+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 45666666666666554333 455555555566667778999999999999988732 12677888887643332
Q ss_pred CCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 008265 270 GDYM-KSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346 (572)
Q Consensus 270 g~~~-~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 346 (572)
..+. .|..++ .-....|. |.-++-+-|+ ++.++|...|+...+.+.. ....|+.+.+-|....+...|++-
T Consensus 313 skLs~LA~~v~---~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVS---NIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHH---HhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 2221 122222 11223343 3223333233 6789999999999987654 577899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
++...++ .+.|-..|-.|..+|.-.+...=|+-.|++..+-.. -|...|.+|..+|.+.++.++|.+.|.....
T Consensus 387 YRrAvdi-----~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 387 YRRAVDI-----NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHhc-----CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 9999985 356777999999999999999999999999988643 3789999999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 427 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.| ..+...+..|...|-+.++.++|...|++-.+
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77 45678899999999999999999999987654
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=7e-08 Score=90.45 Aligned_cols=315 Identities=15% Similarity=0.079 Sum_probs=206.9
Q ss_pred hhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHH
Q 008265 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (572)
Q Consensus 122 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 201 (572)
-+.+.|++++|+..|.+.++. .|+. ...|.-...++.. .|+|+++++---..++ +.|+-+..+..-..++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~e---piFYsNraAcY~~---lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDE---PIFYSNRAACYES---LGDWEKVIEDCTKALE--LNPDYVKALLRRASAH 193 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCC---chhhhhHHHHHHH---HhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHH
Confidence 467999999999999999886 5652 1245545544444 6999999887666654 4566666677777888
Q ss_pred hcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH---------HhcC--CCCcHHHHHHHHHHHHhc-
Q 008265 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS---------KKHL--SSPNMYICRTIIDVCGIC- 269 (572)
Q Consensus 202 ~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m---------~~~~--~~~~~~~~~~ll~~~~~~- 269 (572)
-..|++++|+. +.+...+...+....-.-.+.+++... .+.+ +-|.....++....+...
T Consensus 194 E~lg~~~eal~--------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 194 EQLGKFDEALF--------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred HhhccHHHHHH--------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 88899998866 234444444444444444444444321 2111 224333333322222100
Q ss_pred ------------------------C---CHHHHHHHHHHHHhC-CCCCCHH---------HHHHHHH----HhcCChHHH
Q 008265 270 ------------------------G---DYMKSRAIYEDLRSQ-NVTLNIY---------VFNSLMN----VNAHDLKFT 308 (572)
Q Consensus 270 ------------------------g---~~~~a~~~~~~m~~~-g~~p~~~---------~~~~ll~----~~~~~~~~a 308 (572)
+ .+..|.+.+.+-... -..++.. .-..++. ...|+...+
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 1 122222222221110 0111111 1112222 345899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Q 008265 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (572)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (572)
...|+..++....++. .|--+..+|....+.++..+.|.....+. +-|..+|..-...+.-.+++++|..=|++
T Consensus 346 ~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-----p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-----PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-----CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987655443 26667778999999999999999998752 23445677777777788999999999999
Q ss_pred HHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.+..... +...|--+..+.-+.++++++...|++.+++ ++--..+|+.....+...++++.|.+.|+...+.
T Consensus 420 ai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 420 AISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9876322 4456666666667889999999999999876 4556789999999999999999999999987653
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=3.1e-07 Score=86.25 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=168.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhcCChHHH
Q 008265 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNAHDLKFT 308 (572)
Q Consensus 230 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~a 308 (572)
.+.-.|+.-.|.+-|+........++ ..|--+-..|....+.++.++.|++..+.+ -.||++....-|....+++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence 33446888888888888887644433 337777788899999999999999988764 3466777777777888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Q 008265 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (572)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (572)
..-|++.+..... +...|--+.-+..+.++++++...|++.++. ++....+|+.....+...++++.|.+.|+.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-----FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-----FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 9999999875433 4555666666667889999999999999864 566778999999999999999999999999
Q ss_pred HHHCCCCCc-------hhhH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 389 MLSAGVTPN-------TITW--SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 389 m~~~g~~p~-------~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
..+. .|+ ..++ -.++..-.+ +++..|.+++++..+.. +-....|..|...-.+.|++++|+++|++-
T Consensus 488 ai~L--E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 488 AIEL--EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHhh--ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8775 333 1111 112211122 88999999999998764 234567889999999999999999999976
Q ss_pred h
Q 008265 460 T 460 (572)
Q Consensus 460 ~ 460 (572)
.
T Consensus 564 a 564 (606)
T KOG0547|consen 564 A 564 (606)
T ss_pred H
Confidence 4
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.16 E-value=2.7e-09 Score=106.48 Aligned_cols=207 Identities=14% Similarity=0.162 Sum_probs=130.6
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcC
Q 008265 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLG 319 (572)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~ 319 (572)
.++..+...|+.|+-.||..+|..|+..|+.+.|- +|.-|+-+....+...|+.++.+.. ++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35667788899999999999999999999999999 9999988877788889999988754 5655554
Q ss_pred CCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHH-HHHhCCCCCCHHHH-------------HHHHHHHHccccHHHH
Q 008265 320 VMADMASYNILLKACCLAGNTVL---AQEIYGEVKH-LEAKGVLKLDVFTY-------------STIVKVFADAKWWQMA 382 (572)
Q Consensus 320 ~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~-~~~~~~~~~~~~~~-------------~~li~~~~~~g~~~~a 382 (572)
.|...||+.++.+|...||..- +++.+..+.. ....|.-.|....+ ...+.-..-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5788999999999999998654 3332222211 11112101111110 1122222334555555
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
++++..+...... . ++-..++-+... .....++........-.|+..+|.+++.+-.-.|+.+.|..++.+|++.
T Consensus 159 lkll~~~Pvsa~~--~-p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN--A-PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHhhCCccccc--c-hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 5555544322111 0 111123333322 2233444443333211589999999999999999999999999999877
Q ss_pred ccc
Q 008265 463 KTQ 465 (572)
Q Consensus 463 ~~~ 465 (572)
|..
T Consensus 234 gfp 236 (1088)
T KOG4318|consen 234 GFP 236 (1088)
T ss_pred CCC
Confidence 643
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=6e-08 Score=88.46 Aligned_cols=199 Identities=11% Similarity=0.011 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------- 94 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL---------------- 94 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------
Confidence 445556666666666666666666655432 123445555556666666666666666555543
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
.. .+...+..+...+...|++++|.+.+.+..... ........+..+...+...|++++
T Consensus 95 -----------------~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 95 -----------------NP-NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP---LYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred -----------------CC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---ccccchHHHHHHHHHHHHcCCHHH
Confidence 21 133445555566666677777777777665421 011233455556666777777777
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
|...+.+..+.... +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 154 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 154 AEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777776655221 3455666677777777777777777777665 23455556666666777777777777766654
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=5.8e-08 Score=99.95 Aligned_cols=257 Identities=11% Similarity=0.017 Sum_probs=128.3
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 247 (572)
.+.+++|+.+|++..+. .|.....|..+..++...+.. ..+...+++++|...+++.
T Consensus 274 ~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~---------------------g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 274 PYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQM---------------------GIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred HHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHc---------------------CCcccchHHHHHHHHHHHH
Confidence 35577888888877754 455544444333322211000 0011224456666666666
Q ss_pred HhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCH
Q 008265 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADM 324 (572)
Q Consensus 248 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l--l~~~~~~~~~a~~~~~~m~~~~~~~~~ 324 (572)
.+... -+...+..+...+...|++++|...|++..+.+ |+ ...+..+ +....|++++|...+++..+.... +.
T Consensus 331 l~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 331 TELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 55432 144555555556666666666666666666552 33 2222222 222346666666666666654332 12
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc-hhhHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWS 402 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~ 402 (572)
..+..++..+...|++++|...++++... ..| +...+..+..++...|+.++|.+.+.++... .|+ ....+
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~ 479 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVN 479 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHH
Confidence 22222333455566777777777666541 123 2334555666666677777777777665544 233 23334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+...|...| ++|...++.+.+. ...+...-+..+ .+.-.|+.+.+... +++.+.+
T Consensus 480 ~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 480 LLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 4444555555 3666655555431 112222222222 33345565555554 6665544
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=1e-07 Score=86.97 Aligned_cols=197 Identities=10% Similarity=0.001 Sum_probs=136.5
Q ss_pred cchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 008265 191 LDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (572)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 266 (572)
...+..+...+...|++++|...++.. |.+...+..+...+...|++++|.+.++...+... .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 356778899999999999999988763 55567888899999999999999999999887643 3556778888889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 008265 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346 (572)
Q Consensus 267 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 346 (572)
...|++++|.+.|++.......+. ....+..+...+...|++++|...
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~--------------------------------~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQ--------------------------------PARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHcccHHHHHHHHHHHHhcccccc--------------------------------chHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999876421111 122333445556666677777776
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
+.+.... .+.+...+..+...+...|++++|.+.+++..+. ...+...+..+...+...|+.++|..+.+.+..
T Consensus 158 ~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 158 LTRALQI-----DPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHh-----CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666542 1223445666666666677777777777666654 222444555566666666777777666665543
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=5.2e-08 Score=95.70 Aligned_cols=270 Identities=14% Similarity=0.116 Sum_probs=171.9
Q ss_pred CchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcC---
Q 008265 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG--- 143 (572)
Q Consensus 67 p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~--- 143 (572)
|.. ..+...+...|...|+++.|+.++++..+.-.....-..+.....+..+...|...+++++|..+|+++...-
T Consensus 196 P~~-~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 196 PER-LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred chH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 554 6777779999999999999999999987651000001122234445567778899999999999999987751
Q ss_pred CCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhH
Q 008265 144 VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL 223 (572)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 223 (572)
.-++.. ....++.+....+.+.|++++|...++...+.--... ....+.-...
T Consensus 275 ~G~~h~---~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~------------------------~~~~~~v~~~ 327 (508)
T KOG1840|consen 275 FGEDHP---AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL------------------------GASHPEVAAQ 327 (508)
T ss_pred cCCCCH---HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh------------------------ccChHHHHHH
Confidence 112222 1223333333334567888888777766543210000 0000111245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKH---LSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 296 (572)
++.+...|...+++++|..++....+. -+.++ ..+++.|-..|.+.|++++|.++|++....
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~----------- 396 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI----------- 396 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-----------
Confidence 667788888888888888888755332 12222 358899999999999999999999888753
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhCCCCCCH-HHHHHHHHHHH
Q 008265 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE-AKGVLKLDV-FTYSTIVKVFA 374 (572)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~-~~~~~li~~~~ 374 (572)
.++.......-....++.+...|.+.++.++|.++|.+..... ..|.-.|++ .+|..|...|.
T Consensus 397 ---------------~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~ 461 (508)
T KOG1840|consen 397 ---------------LRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR 461 (508)
T ss_pred ---------------HHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence 1111111111123456777788888888888888888776543 123223343 47888888888
Q ss_pred ccccHHHHHHHHHHHH
Q 008265 375 DAKWWQMALKVKEDML 390 (572)
Q Consensus 375 ~~g~~~~a~~~~~~m~ 390 (572)
+.|+++.|+++.+...
T Consensus 462 ~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 462 AQGNYEAAEELEEKVL 477 (508)
T ss_pred HcccHHHHHHHHHHHH
Confidence 8888888888877665
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=1.2e-07 Score=97.65 Aligned_cols=212 Identities=16% Similarity=0.085 Sum_probs=142.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH--HHHh
Q 008265 235 RDLVSALRAYDASKKHLSSPN-MYICRTIIDVCG---------ICGDYMKSRAIYEDLRSQNVTLN-IYVFNSL--MNVN 301 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l--l~~~ 301 (572)
+++++|.+.|++..+. .|+ ...|..+..+|. ..+++++|...+++..+. .|+ ...+..+ +...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 3467888889888775 343 445555544433 224478899999988876 343 4444444 2234
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccccHH
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQ 380 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~ 380 (572)
.|++++|...|++..+.+.. +...+..+...+...|++++|...++...+ +.|+.. .+..++..+...|+++
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~------l~P~~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLK------LDPTRAAAGITKLWITYYHTGID 423 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCChhhHHHHHHHHHhccCHH
Confidence 58899999999998886533 466777788888899999999999999887 345432 3333444566678899
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-CCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
+|+..+++..+....-+...+..+..++...|+.++|...+.++... .|+.. ..+.+...|...| ++|...++.+
T Consensus 424 eA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~l 499 (553)
T PRK12370 424 DAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREF 499 (553)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence 99999988776532213445667777888899999999998887654 44433 3444445556666 4777777776
Q ss_pred hh
Q 008265 460 TL 461 (572)
Q Consensus 460 ~~ 461 (572)
.+
T Consensus 500 l~ 501 (553)
T PRK12370 500 LE 501 (553)
T ss_pred HH
Confidence 54
No 58
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.09 E-value=1.7e-05 Score=77.63 Aligned_cols=370 Identities=14% Similarity=0.052 Sum_probs=256.1
Q ss_pred hhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHh
Q 008265 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (572)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 202 (572)
.+...+.+.|.-++.+..+. -|. .+.+++ .|++...++.|..+++...+. -|.+...|.+-...--
T Consensus 386 AVelE~~~darilL~rAvec--cp~------s~dLwl----AlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE 451 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVEC--CPQ------SMDLWL----ALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEE 451 (913)
T ss_pred HHhccChHHHHHHHHHHHHh--ccc------hHHHHH----HHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHH
Confidence 33444455566666665554 221 333332 345568888888888888763 4666677877666667
Q ss_pred cCCChHHHHHhhhc----CCCch-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCC
Q 008265 203 NKPDVNLAIRYACI----VPRAD-----ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGD 271 (572)
Q Consensus 203 ~~g~~~~a~~~~~~----~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~ 271 (572)
.+|+.+...++.++ +..++ ..|-.=...|-..|.+--+..+......-|+.-. ..+|..--..|.+.+.
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 78888888877655 22222 3444455667777878778888877777666432 3588888888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008265 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349 (572)
Q Consensus 272 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 349 (572)
++-|..+|....+. ++-+...|...... ..|..++...+|++....-. -....|-....-+-..|+...|..++..
T Consensus 532 ~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 532 IECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999888765 23345556555444 34788888899998887533 3566777777888889999999999998
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008265 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429 (572)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 429 (572)
..+. .+.+...|-+.+..-..+.++++|..+|.+.... .|+...|..-+..---.+..++|.+++++..+.
T Consensus 610 af~~-----~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-- 680 (913)
T KOG0495|consen 610 AFEA-----NPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-- 680 (913)
T ss_pred HHHh-----CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--
Confidence 8763 2345668999999999999999999999998875 567777776666666778999999999888875
Q ss_pred CCC-HHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhh
Q 008265 430 EPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (572)
Q Consensus 430 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (572)
-|+ ...|..+.+.+-+.++++.|.+.|..=.+
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k----------------------------------------------- 713 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK----------------------------------------------- 713 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc-----------------------------------------------
Confidence 444 46778888888899999999888864322
Q ss_pred cCCCCC-HHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCccccc
Q 008265 509 FSFKPT-TTTYNILMKACCT--DYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGAL 568 (572)
Q Consensus 509 ~~~~p~-~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~ 568 (572)
..|+ +..|-.|.+---+ ..-+|..+++.-+..+ | |...|...|.+=.+.|+.+.|.
T Consensus 714 --~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 714 --KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred --cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHH
Confidence 1333 3344433332222 3457777777766543 4 4566777777777777776654
No 59
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=3.3e-06 Score=81.44 Aligned_cols=388 Identities=13% Similarity=0.086 Sum_probs=218.9
Q ss_pred HHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhh
Q 008265 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (572)
Q Consensus 75 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ 154 (572)
-+-++.+...|++++|......++..++++ ..++.+-+-++++.++|++|+.+.+.-... .- ++..
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd--------~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~----~~~~ 81 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDD--------EDAIRCKVVALIQLDKYEDALKLIKKNGAL--LV----INSF 81 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCc--------HhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hh----cchh
Confidence 334577788899999999999999887553 334555566688889999888555432211 11 1111
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCch-------------
Q 008265 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD------------- 221 (572)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------------- 221 (572)
+ +-++||.| +.+..|+|+..++ |..+.+..+...-.+.+.+.|++++|..+++.+..++
T Consensus 82 ~--fEKAYc~Y-rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 82 F--FEKAYCEY-RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred h--HHHHHHHH-HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 1 35556553 5677888877776 3333443344444566777888888877776541110
Q ss_pred -------------------hHHHH---HHHHHHhcCCHHHHHHHHHHHHhcC-------------CCCcHH-HHHHHHHH
Q 008265 222 -------------------ILFCN---FVREFGKKRDLVSALRAYDASKKHL-------------SSPNMY-ICRTIIDV 265 (572)
Q Consensus 222 -------------------~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~-------------~~~~~~-~~~~ll~~ 265 (572)
.+|.. ..-.+...|++.+|+++++...+.+ +.-+.. .---+...
T Consensus 154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 12332 3445667899999999998872211 000111 12334556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHhc-CC-----------------hHHHHHHHHH---------
Q 008265 266 CGICGDYMKSRAIYEDLRSQNVTLNIYV----FNSLMNVNA-HD-----------------LKFTLEVYKN--------- 314 (572)
Q Consensus 266 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~-~~-----------------~~~a~~~~~~--------- 314 (572)
+...|+-++|..++...++... +|... -|.++.... .+ .+..+..+..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999988753 34322 222222110 00 0001000000
Q ss_pred -----------------HHHcCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 008265 315 -----------------MQKLGVMADMASYNILLKACCLAG--NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (572)
Q Consensus 315 -----------------m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 375 (572)
....-.......+.+++..+.+.. ....+..++...-+ +...-...+.-+++.....
T Consensus 313 ~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~----~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD----GHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc----cCCchhHHHHHHHHHHHHh
Confidence 000000111233444444433222 23444555544432 2111123355555666777
Q ss_pred cccHHHHHHHHH--------HHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH----H
Q 008265 376 AKWWQMALKVKE--------DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA--GCEPNSQCCNILL----Q 441 (572)
Q Consensus 376 ~g~~~~a~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li----~ 441 (572)
.|+++.|++++. .+.+.+..|.. ...+...+.+.++.+.|..++.+.... .-.+......+++ .
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 888888888888 55555544443 444566666667666666666665431 0012222223332 2
Q ss_pred HHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHH
Q 008265 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521 (572)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 521 (572)
--.+.|+.++|..+++++.+.. .+|..+...+
T Consensus 467 f~lr~G~~~ea~s~leel~k~n------------------------------------------------~~d~~~l~~l 498 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFN------------------------------------------------PNDTDLLVQL 498 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhC------------------------------------------------CchHHHHHHH
Confidence 3345688888888888877532 5789999999
Q ss_pred HHHHhh-cHHHHHHHHHHH
Q 008265 522 MKACCT-DYYRVKALMNEM 539 (572)
Q Consensus 522 l~a~~~-~~~~a~~~~~~m 539 (572)
+.+|+. +.+.|..+-..+
T Consensus 499 V~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 499 VTAYARLDPEKAESLSKKL 517 (652)
T ss_pred HHHHHhcCHHHHHHHhhcC
Confidence 999998 888888876654
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.09 E-value=9.8e-09 Score=102.63 Aligned_cols=253 Identities=16% Similarity=0.145 Sum_probs=118.2
Q ss_pred HHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHh
Q 008265 134 GVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (572)
Q Consensus 134 ~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 213 (572)
+++..+...|+.|+.. +|..++. +|+..|+.+.|- +|.-|.-...+... ..++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRv----tyqsLia---rYc~~gdieaat-if~fm~~ksLpv~e-~vf~~lv~sh~~And~Enpk-- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRV----TYQSLIA---RYCTKGDIEAAT-IFPFMEIKSLPVRE-GVFRGLVASHKEANDAENPK-- 79 (1088)
T ss_pred hHHHHHHHhcCCCchh----hHHHHHH---HHcccCCCcccc-chhhhhcccccccc-hhHHHHHhcccccccccCCC--
Confidence 3556666677777664 4554544 344467777666 66666554443332 44556666666666665554
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHH---HHHHHHHH----HhcCCCCcHHHH--------------HHHHHHHHhcCCH
Q 008265 214 ACIVPRADILFCNFVREFGKKRDLVS---ALRAYDAS----KKHLSSPNMYIC--------------RTIIDVCGICGDY 272 (572)
Q Consensus 214 ~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m----~~~~~~~~~~~~--------------~~ll~~~~~~g~~ 272 (572)
.+...+|.+|..+|...||+.. +++.+..+ ...|+--....+ ...+....-.|-|
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 2223566677777777666544 11111111 111111000000 1112222223333
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 273 MKSRAIYEDLRSQNV-TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 273 ~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
+.+++++..+..... .|-.+ +++-+.-...-..++.+......-.|+..+|.+++++-.-.|+.+.|..++.+|+
T Consensus 156 aqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 333333333322110 01111 1332222222333333332221113566666666666666666666666666665
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcC
Q 008265 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (572)
Q Consensus 352 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 412 (572)
+ .| ++.+..-|-.|+-+ .++...+..+++.|.+.|+.|+..|+.--+..+..+|
T Consensus 232 e---~g-fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 232 E---KG-FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred H---cC-CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 4 34 45555444444433 5555556666666666666666666655555554433
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=4.3e-06 Score=75.49 Aligned_cols=347 Identities=10% Similarity=-0.028 Sum_probs=189.7
Q ss_pred HHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHH
Q 008265 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (572)
Q Consensus 78 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~ 157 (572)
+.-+..+.++..|+.+++.-...+-+-+ -..-..+...+...|++++|+.+|..+.+..-.|. -+.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~------el~v 95 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA------ELGV 95 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc------ccch
Confidence 4566678899999999887764443321 11122345567788999999999998877543332 2233
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCH
Q 008265 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (572)
Q Consensus 158 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~ 237 (572)
.+.+|.-+ .|.+.+|..+-+.. |+++...-.|.....+.++-++-..+...+.....---+|.....-.-.+
T Consensus 96 nLAcc~Fy--Lg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HY 167 (557)
T KOG3785|consen 96 NLACCKFY--LGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHY 167 (557)
T ss_pred hHHHHHHH--HHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH
Confidence 33333333 68899998876643 34444445566777778888888887777766554444555555556678
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH----hcC--------
Q 008265 238 VSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNI-YVFNSLMNV----NAH-------- 303 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~----~~~-------- 303 (572)
++|.+++......+ |+-...|.-+. +|.+..-++-+.+++.-..+. -||. ...|..... +.|
T Consensus 168 QeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k 243 (557)
T KOG3785|consen 168 QEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKK 243 (557)
T ss_pred HHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHH
Confidence 99999999887743 45555554443 456666777777777766554 2442 222222111 111
Q ss_pred -------------------------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCC
Q 008265 304 -------------------------DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358 (572)
Q Consensus 304 -------------------------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 358 (572)
+.+.|++++-.+.+. -+..--.++--|.+.++..+|..+.+++.-
T Consensus 244 ~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P------ 313 (557)
T KOG3785|consen 244 ELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP------ 313 (557)
T ss_pred HHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC------
Confidence 222333333222221 112233344557788888888888776532
Q ss_pred CCCCHHHHHHHHHHH-----HccccHHHHHHHHHHHHHCCCCCchhh-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008265 359 LKLDVFTYSTIVKVF-----ADAKWWQMALKVKEDMLSAGVTPNTIT-WSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (572)
Q Consensus 359 ~~~~~~~~~~li~~~-----~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 432 (572)
..|-.+....++.+- .....+.-|.+.|+..-+.+..-|.+. -.++..++.-..++++++.+++.+...=...|
T Consensus 314 ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD 393 (557)
T KOG3785|consen 314 TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD 393 (557)
T ss_pred CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 223333322222221 112234556666665555544333221 23344444444455555555555554322222
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 433 SQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
...| .+.++.+..|++.+|.++|-++.
T Consensus 394 ~Fn~-N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 394 DFNL-NLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred hhhh-HHHHHHHHhcChHHHHHHHhhhc
Confidence 2222 34455555666666666654443
No 62
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=1.1e-05 Score=75.73 Aligned_cols=322 Identities=10% Similarity=0.069 Sum_probs=206.0
Q ss_pred hhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHh
Q 008265 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (572)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 202 (572)
-..++++..|..+|+........ .+.++++..---.+...+..|..+++..... -|.--..|..-+.+--
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r--------~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYR--------NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccc--------cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHH
Confidence 34567788999999988775311 2333444333334577888888888887653 3433345666666667
Q ss_pred cCCChHHHHHhhhc---CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 008265 203 NKPDVNLAIRYACI---VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279 (572)
Q Consensus 203 ~~g~~~~a~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 279 (572)
..|++..|.++|.. ..++...|.+.|..=.+-+.++.|..+|+...- +.|++..|--..+.=-++|+...|..+|
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 78999999999987 366678999999999999999999999998876 4689999988888888899999888888
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHH--hcCChHHHHHHHHHH----------------------------------------
Q 008265 280 EDLRSQ-NV-TLNIYVFNSLMNV--NAHDLKFTLEVYKNM---------------------------------------- 315 (572)
Q Consensus 280 ~~m~~~-g~-~p~~~~~~~ll~~--~~~~~~~a~~~~~~m---------------------------------------- 315 (572)
+...+. |- .-+...+.+.... .++.++.|..+|+-.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 877654 11 0011122221111 112233332222222
Q ss_pred ----HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-----HH---HccccHHH
Q 008265 316 ----QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF--TYSTIVK-----VF---ADAKWWQM 381 (572)
Q Consensus 316 ----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~li~-----~~---~~~g~~~~ 381 (572)
++.+ +.|-.+|-..+..-...|+.+...++|+.... + ++|-.. .|.-.|- ++ ....+.+.
T Consensus 311 YE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa----n-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 311 YEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA----N-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred HHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc----c-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 2211 23455666666666667777777777777764 1 334211 1221111 11 23567777
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACA----NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (572)
+.++++...+. ++-...||..+--.|+ ++.++..|.+++.... |..|-..+|...|..=.+.+++|.+..+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777777663 2334455555444443 4567777777777655 457888888888888888888888888888
Q ss_pred Hhhhcccc
Q 008265 458 SWTLSKTQ 465 (572)
Q Consensus 458 ~m~~~~~~ 465 (572)
+..+.++.
T Consensus 462 kfle~~Pe 469 (677)
T KOG1915|consen 462 KFLEFSPE 469 (677)
T ss_pred HHHhcChH
Confidence 88776543
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.03 E-value=2e-07 Score=91.71 Aligned_cols=261 Identities=14% Similarity=0.104 Sum_probs=159.6
Q ss_pred HHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHH-HHHHHhhhhhHHHHHHHHHHHHhCCCCCccc
Q 008265 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN-ECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL 191 (572)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~-~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 191 (572)
..++..+...|...|+++.|..++++..+.-..-.. .....+...+. ....+...+++++|..+|++++....
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e----- 272 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE----- 272 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-----
Confidence 445555888899999999999999887765000000 01112222232 33344557888999988888765321
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh---c--CCC-CcH-HHHHHHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIV-PRADILFCNFVREFGKKRDLVSALRAYDASKK---H--LSS-PNM-YICRTII 263 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~--~~~-~~~-~~~~~ll 263 (572)
.+|... |....+++.|...|.+.|++++|...++...+ . |.. |.+ ..++.+.
T Consensus 273 --------------------~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 273 --------------------EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred --------------------HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 011111 11126777778888888888888777765432 1 111 222 2455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHH
Q 008265 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343 (572)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 343 (572)
..|...+++++|..++....+. +.......-.--..+++.|...|.+.|++++|
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i--------------------------~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea 386 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKI--------------------------YLDAPGEDNVNLAKIYANLAELYLKMGKYKEA 386 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHH--------------------------HHhhccccchHHHHHHHHHHHHHHHhcchhHH
Confidence 6777778888888887754432 22111110011245788999999999999999
Q ss_pred HHHHHHHHHHHHhCCC--CCC-HHHHHHHHHHHHccccHHHHHHHHHHHHH----CCC-CCch-hhHHHHHHHHHHcCCH
Q 008265 344 QEIYGEVKHLEAKGVL--KLD-VFTYSTIVKVFADAKWWQMALKVKEDMLS----AGV-TPNT-ITWSSLINACANAGLV 414 (572)
Q Consensus 344 ~~~~~~~~~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~-~p~~-~~~~~li~~~~~~g~~ 414 (572)
.++|+++...-+.+.- .+. ...++.|...|.+.+++.+|.++|.+... .|. .|+. .+|..|...|.+.|++
T Consensus 387 ~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~ 466 (508)
T KOG1840|consen 387 EELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNY 466 (508)
T ss_pred HHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccH
Confidence 9999998875433211 122 34667777888888888888887776542 222 1222 4566777777777777
Q ss_pred HHHHHHHHHHH
Q 008265 415 EQAMHLFEEML 425 (572)
Q Consensus 415 ~~a~~~~~~m~ 425 (572)
++|.++.+.+.
T Consensus 467 e~a~~~~~~~~ 477 (508)
T KOG1840|consen 467 EAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 64
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=2.2e-05 Score=73.83 Aligned_cols=318 Identities=16% Similarity=0.135 Sum_probs=207.4
Q ss_pred hhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcC
Q 008265 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (572)
Q Consensus 125 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 204 (572)
..|++..|..+|..-.+. .|+...+.+.++.-+ +.+.++.|..+++...-.. +++..|..-..--.+.
T Consensus 153 ~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fEl-------RykeieraR~IYerfV~~H---P~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEW--EPDEQAWLSFIKFEL-------RYKEIERARSIYERFVLVH---PKVSNWIKYARFEEKH 220 (677)
T ss_pred HhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHH-------HhhHHHHHHHHHHHHheec---ccHHHHHHHHHHHHhc
Confidence 446777777777776665 676664444333332 2467777777777765422 2334455445555556
Q ss_pred CChHHHHHhhhcCC---Cch----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------------------
Q 008265 205 PDVNLAIRYACIVP---RAD----ILFCNFVREFGKKRDLVSALRAYDASKKHL-------------------------- 251 (572)
Q Consensus 205 g~~~~a~~~~~~~~---~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------------------- 251 (572)
|++..|.+++.... .++ ..+.++...=.++..++.|.-+|.-..++-
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 66666655554321 111 222222222223333333333333222110
Q ss_pred -----------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-----H-----hc
Q 008265 252 -----------------SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI--YVFNSLMN-----V-----NA 302 (572)
Q Consensus 252 -----------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~-----~-----~~ 302 (572)
-+-|-.+|--.++.--..|+.+...++|+..+.. ++|-. .-|.-.|. + -+
T Consensus 301 d~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1224456666666667778888899999888865 34421 22332222 1 23
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcccc
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACC----LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 378 (572)
.+.+.+.++|+...+. ++....||.-+--+|+ +..++..|.+++..... ..|-..+|-..|..-.+.++
T Consensus 380 ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG------~cPK~KlFk~YIelElqL~e 452 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG------KCPKDKLFKGYIELELQLRE 452 (677)
T ss_pred hhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc------cCCchhHHHHHHHHHHHHhh
Confidence 6889999999988873 5556778777666655 56788899999988764 46888899999999899999
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 008265 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPNSQCCNILLQACVEACQFDRAFRLFR 457 (572)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (572)
+|.+..+++...+-+.. +..+|......=...|+.+.|..+|....+.. +......|.+.|+-=...|.++.|..+++
T Consensus 453 fDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 99999999999988654 67888887777788899999999999988642 23345667777777778999999999999
Q ss_pred Hhhhcc
Q 008265 458 SWTLSK 463 (572)
Q Consensus 458 ~m~~~~ 463 (572)
++.+..
T Consensus 532 rlL~rt 537 (677)
T KOG1915|consen 532 RLLDRT 537 (677)
T ss_pred HHHHhc
Confidence 987643
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.97 E-value=3.3e-05 Score=75.48 Aligned_cols=408 Identities=13% Similarity=0.129 Sum_probs=243.4
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...|-..+..+.+.|++..-...|+..+..=+. +- .-.++.-.+.-.-..|-++-++.+|++-.+. .|..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv--tq----H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~-- 171 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPV--TQ----HDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA-- 171 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch--Hh----hccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--
Confidence 356666667777778888888888776654211 10 0122223334444667778899999888775 4432
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCC-----CCcccchHHHHHHHHhcCCChH---HHHHhhhc----CC
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL-----PVKELDEEFRIVQLCVNKPDVN---LAIRYACI----VP 218 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~----~~ 218 (572)
-...+.. +++.+++++|.+.+..++.... .+.+...|.-+-+...++.+.- ....+++. .+
T Consensus 172 ~eeyie~-------L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft 244 (835)
T KOG2047|consen 172 REEYIEY-------LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT 244 (835)
T ss_pred HHHHHHH-------HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc
Confidence 1122222 2447999999999988765431 1334445665555554433222 12222322 22
Q ss_pred C-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc----------------C------CHHHH
Q 008265 219 R-ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC----------------G------DYMKS 275 (572)
Q Consensus 219 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------g------~~~~a 275 (572)
. -+..|+.|...|.+.|.+++|.++|++....- .+..-|+.+.++|+.- | +++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 2 24889999999999999999999999876642 2333344444444221 1 24445
Q ss_pred HHHHHHHHhCC-----------CCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcC
Q 008265 276 RAIYEDLRSQN-----------VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA------DMASYNILLKACCLAG 338 (572)
Q Consensus 276 ~~~~~~m~~~g-----------~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~------~~~~~~~ll~~~~~~g 338 (572)
+.-|+.+...+ -+-++..|..-+..+-++..+...++.+..+. +.| -...|..+.+.|-..|
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcC
Confidence 55566655432 12345566666666777788888888887653 222 1345778888899999
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC-----------------chhhH
Q 008265 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-----------------NTITW 401 (572)
Q Consensus 339 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------------~~~~~ 401 (572)
+++.|..+|++..+..-.+ +.-=..+|..-...=.++.+++.|+++++.....--.| +...|
T Consensus 402 ~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred cHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999999999887631000 00012355555555667788889998888765331111 12235
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHh
Q 008265 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481 (572)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 481 (572)
...++.--..|-++....+++.+.+..+.....+.| ..--+-.+..+++++++|++=...
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~L------------------- 540 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISL------------------- 540 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCcc-------------------
Confidence 555555566677888888888887755432222211 111233455678888888653211
Q ss_pred hhhhccccccCCCCcccCCccchhhhhcCCCCC-HHHHHHHHHHHhh-----cHHHHHHHHHHHHhCCCCCCH
Q 008265 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT-TTTYNILMKACCT-----DYYRVKALMNEMRTVGLSPNH 548 (572)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~a~~~-----~~~~a~~~~~~m~~~g~~p~~ 548 (572)
+. -|+ ...|+..|.-+.+ ..+.|..+|+...+ |.+|..
T Consensus 541 ---------------------------Fk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 541 ---------------------------FK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred ---------------------------CC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 11 233 3578888877765 45899999999888 555543
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=3.3e-07 Score=81.60 Aligned_cols=193 Identities=10% Similarity=-0.046 Sum_probs=108.0
Q ss_pred HHHHHHHHhcCCChHHHHHhhhc----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 008265 194 EFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (572)
Q Consensus 194 ~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 269 (572)
+..|-++|.+...++.|+.++.. .|.+.....-+.+.+-..++.++|.++|+...+.. +.++....++...|.-.
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~ 337 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYD 337 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccC
Confidence 33344444444444444443322 23332233335556666666777777776665542 23445555566666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHH
Q 008265 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAHDLKFTLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEI 346 (572)
Q Consensus 270 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~ 346 (572)
++.+-|+..|+++.+-|+.....-.|+-+.+ +++.++.++.-|......--.|+ ...|-.+-......||+..|.+-
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 7777777777777766654333333333443 34666666666666554332232 33465666666667777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
|+..... -.-+...+|.|.-.-.+.|++++|..++......
T Consensus 418 frlaL~~-----d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 418 FRLALTS-----DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhcc-----CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7666541 1234556777666667777777777777766654
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.95 E-value=1.7e-06 Score=86.19 Aligned_cols=283 Identities=13% Similarity=0.081 Sum_probs=190.5
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhc-----CC
Q 008265 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKK-----RD 236 (572)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~-----g~ 236 (572)
...|++++|++.++.-... -++...........+.+.|+.++|..++..+ |.+..-|..+..+..-. .+
T Consensus 15 ~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccccc
Confidence 4589999999999875443 2334344556788888999999998887664 55545555566655332 35
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHH
Q 008265 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY-MKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYK 313 (572)
Q Consensus 237 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~ 313 (572)
.+...++|+.+...- |.......+.=.+..-..+ ..+...+..+..+|+++- |+.+-..|. ....-...++.
T Consensus 93 ~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPsl---F~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 93 VEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSL---FSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred HHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHcChhHHHHHHHHHH
Confidence 777888888887653 3222222221111111122 345556667777786443 333333333 22333334444
Q ss_pred HHHH----cC----------CCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcc
Q 008265 314 NMQK----LG----------VMADMA--SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADA 376 (572)
Q Consensus 314 ~m~~----~~----------~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 376 (572)
.... .+ -.|... ++..+.+.|...|++++|.+.+++... ..|+ +..|..-.+.+-+.
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~------htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE------HTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHC
Confidence 4332 11 123443 345567778899999999999999987 3565 55888889999999
Q ss_pred ccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHHhCC
Q 008265 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC--------CNILLQACVEACQ 448 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------~~~li~~~~~~g~ 448 (572)
|++.+|.+.++..+..... |...-+..+..+.++|++++|.+++....+.+..|-... ......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988765 888888899999999999999999999987765443221 1445678999999
Q ss_pred HhHHHHHHHHhhhc
Q 008265 449 FDRAFRLFRSWTLS 462 (572)
Q Consensus 449 ~~~A~~~~~~m~~~ 462 (572)
+..|++-|..+.+.
T Consensus 321 ~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 321 YGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888776543
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.92 E-value=2.7e-06 Score=84.84 Aligned_cols=285 Identities=14% Similarity=0.041 Sum_probs=188.4
Q ss_pred HhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 008265 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (572)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 200 (572)
..+...|++++|++.+..-... -+|.. ..+..-.. -+.+.|+.++|..+|..+.+.+ |++...|..+..+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~---~~~E~rA~---ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKL---AVLEKRAE---LLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHH---HHHHHHHH---HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 3456889999999999875554 23321 12222222 3345799999999999999864 6776666666666
Q ss_pred HhcCC-----ChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 008265 201 CVNKP-----DVNLAIRYACIV----PRADILFCNFVREFGKKRDL-VSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270 (572)
Q Consensus 201 ~~~~g-----~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 270 (572)
..-.. ..+...++++.+ |.....-...+... ....+ ..+...+..+...|+++ +++.+-..|....
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~-~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFL-EGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPE 157 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccC-CHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChh
Confidence 63222 455556666553 32221111112211 11222 34455566677777643 5667777777666
Q ss_pred CHHHHHHHHHHHHhC----C----------CCCCHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 008265 271 DYMKSRAIYEDLRSQ----N----------VTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMAD-MASYNILL 331 (572)
Q Consensus 271 ~~~~a~~~~~~m~~~----g----------~~p~~~~~~~ll~~----~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll 331 (572)
+.+-..+++...... + -.|....|....-+ +.|++++|++.+++.++.. |+ +..|..-.
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~Ka 235 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKA 235 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 666666666665432 1 13445455544433 4489999999999998864 44 66788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhH--------HH
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW--------SS 403 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--------~~ 403 (572)
..+-+.|++.+|.+.++....+. .-|.+.-+-.+..+.++|++++|.+++....+.+..|-...+ .-
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD-----~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e 310 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELD-----LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETE 310 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCC-----hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHH
Confidence 99999999999999999999853 346667777888899999999999999999877654433222 34
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 008265 404 LINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
...+|.+.|++..|++.|..+.+
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 55678899999888877776653
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=2.8e-07 Score=82.10 Aligned_cols=225 Identities=12% Similarity=0.064 Sum_probs=146.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-H--hc
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-V--NA 302 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~--~~ 302 (572)
.+..+|.+.|.+.+|+..|..-.+.. |-+.||-.+-+.|.+..+.+.|+.+|.+-.+. -|..+||..=+. . -.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 46677777777777777777666543 44456666777777777777777777776655 455555543322 2 22
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
++.+++.++++...+.... +......+...|.-.++++.|...|+.+.+++ .-+...|+.+.-+|.-.+++|-+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-----~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMG-----AQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhc-----CCChHHHhhHHHHHHhhcchhhh
Confidence 5677777777777664322 44555555566666777777777777777753 34566777777777777777777
Q ss_pred HHHHHHHHHCCCCCch--hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 383 LKVKEDMLSAGVTPNT--ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
+.-|......-..|+. ..|..+-....-.|++..|.+.|+.....+ .-+...++.|.-.-.+.|++++|..+++..+
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 7777766654333433 346556666667778888888887776553 3345667777666677888888888877655
Q ss_pred h
Q 008265 461 L 461 (572)
Q Consensus 461 ~ 461 (572)
.
T Consensus 457 s 457 (478)
T KOG1129|consen 457 S 457 (478)
T ss_pred h
Confidence 4
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.1e-05 Score=77.48 Aligned_cols=280 Identities=13% Similarity=0.049 Sum_probs=211.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChH----HHHHhhhcCCCchhHHHHHHHHHH
Q 008265 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVREFG 232 (572)
Q Consensus 157 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~----~a~~~~~~~~~~~~~~~~li~~~~ 232 (572)
++......+-..+++.+..++.+.+.+.. |.....+..-|..+.+.|+.. -+.++.+..|....+|-++.-.|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH
Confidence 33333334455789999999999988753 444455556677777777655 456677778999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHhcCChHHHHH
Q 008265 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ--NVTLNIYVFNSLMNVNAHDLKFTLE 310 (572)
Q Consensus 233 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~a~~ 310 (572)
-.|+..+|.+.|.+....... =...|-.....|+-.|..|+|+..+...-+. |. --+..|..+=....++.+.|.+
T Consensus 324 ~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHHHHHHHHHhccHHHHHH
Confidence 999999999999987553211 2357888899999999999999999877654 21 1234455555556689999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccccHHHHHHHHHH
Q 008265 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKL-DVFTYSTIVKVFADAKWWQMALKVKED 388 (572)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (572)
.|.+...... -|+...+-+.-.....+.+.+|...|.......+.- .-.+ -..+++.|..+|.+.+.+++|+..+++
T Consensus 402 Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 9998876533 367778888777778899999999999887432211 1111 344788999999999999999999999
Q ss_pred HHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
......+ |..++.++.-.|...|+++.|.+.|.+.... .|+..+-..++..+.
T Consensus 481 aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 481 ALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred HHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 8877443 8889999999999999999999999998754 788877776666443
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.78 E-value=3e-05 Score=75.79 Aligned_cols=201 Identities=13% Similarity=-0.016 Sum_probs=120.1
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcC-ChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
...|..+...+...|+.+.+...+....+... +++. .+........+...|++++|..++++..+. .|+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~ 77 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATE------RERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDL 77 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcH
Confidence 55666677777777888887777777665433 2221 112222233467889999999999988776 45432
Q ss_pred hhhhhhHH-HHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHH
Q 008265 150 FDGSGFKL-LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILF 224 (572)
Q Consensus 150 ~~~~~~~~-l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~ 224 (572)
..+.. +.... .....+..+.+.+.++. .....|........+...+...|++++|.+.++.. |.+...+
T Consensus 78 ---~a~~~~~~~~~-~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~ 151 (355)
T cd05804 78 ---LALKLHLGAFG-LGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAV 151 (355)
T ss_pred ---HHHHHhHHHHH-hcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHH
Confidence 11111 00000 00113455555555543 11222333333344556777888888887776653 5555667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 225 CNFVREFGKKRDLVSALRAYDASKKHLS-SPNM--YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 225 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
..+...+...|++++|...++...+... .++. ..|..+...+...|++++|.++|++....
T Consensus 152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 7778888888888888888887765422 1222 34556777788888888888888887543
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.76 E-value=8.2e-06 Score=76.88 Aligned_cols=63 Identities=10% Similarity=-0.033 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
..|+.+...+...|++++|.+.|+...+.... +...|..+..++...|++++|.+.|+...+.
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44555555555555555555555555443211 2334444444455555555555555555443
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.7e-05 Score=76.28 Aligned_cols=273 Identities=13% Similarity=0.031 Sum_probs=199.1
Q ss_pred HHHHhhhhHhhhhhCChhHHHHHHHHhhhc-CCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCccc
Q 008265 113 LEMVASGIVKSIREGRIDCVVGVLKKLNEL-GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL 191 (572)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 191 (572)
.+.+..-...+...+++.+...+.+.+.+. ++.++ .+-+-|.++ .+.|+..+-..+=.+|.+. -|...
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~------~~~~~ia~l---~el~~~n~Lf~lsh~LV~~--yP~~a 312 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLP------CLPLHIACL---YELGKSNKLFLLSHKLVDL--YPSKA 312 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcc------hHHHHHHHH---HHhcccchHHHHHHHHHHh--CCCCC
Confidence 334445556677889999999999888776 23333 333334333 3346555555555555543 57888
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcCCC----chhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIVPR----ADILFCNFVREFGKKRDLVSALRAYDASKKH--LSSPNMYICRTIIDV 265 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~ 265 (572)
.+|-.+.--|...|+.++|.++|.+... =+..|-.+.+.|+-.|..+.|...+...-+. |... +..|. ---
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-P~LYl--gme 389 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-PSLYL--GME 389 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-hHHHH--HHH
Confidence 9999999999999999999999987422 2477888999999999999999999877654 2211 12332 234
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH-Hh-cCChHHHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHH
Q 008265 266 CGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMN-VN-AHDLKFTLEVYKNMQK----LG--VMADMASYNILLKACCL 336 (572)
Q Consensus 266 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~-~~-~~~~~~a~~~~~~m~~----~~--~~~~~~~~~~ll~~~~~ 336 (572)
|.+.++++.|.++|.+.... -| |+...+-+-- +| .+.+.+|...|+.... .+ ...-..+++.|.++|.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 67889999999999888754 44 4445544422 23 4789999998887652 11 11245678999999999
Q ss_pred cCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHH
Q 008265 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (572)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 408 (572)
.+.+++|+..|+....+ .+-+..++.++.-.|...|+++.|.+.|.+..-. .||..+-..++..+
T Consensus 468 l~~~~eAI~~~q~aL~l-----~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLL-----SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred HhhHHHHHHHHHHHHHc-----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 99999999999999875 3668889999999999999999999999998764 78877777776643
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=6.5e-05 Score=68.11 Aligned_cols=218 Identities=13% Similarity=0.114 Sum_probs=142.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC-------ChHH
Q 008265 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-------DLKF 307 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~ 307 (572)
+.-+.|++++-.+.+. -|... .| ++--|.+.+++.+|..+.+++.-. .|-.+....+..+-.| ...-
T Consensus 268 rngEgALqVLP~L~~~--IPEAR-lN-L~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 268 RNGEGALQVLPSLMKH--IPEAR-LN-LIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred eCCccHHHhchHHHhh--ChHhh-hh-heeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 3445566666555442 23322 23 344578999999999998887533 4555666666665332 2445
Q ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHH
Q 008265 308 TLEVYKNMQKLGVMADMAS-YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (572)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 386 (572)
|.+.|+..-+.+..-|... -.++...+.-..++++++-.+..++..- ...|...+ .+..+++..|++.+|+++|
T Consensus 342 AqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF----~NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 342 AQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF----TNDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcchhhh-HHHHHHHHhcChHHHHHHH
Confidence 6666766655554434322 2344455556677888888888877532 33444444 4678999999999999999
Q ss_pred HHHHHCCCCCchhhH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 387 EDMLSAGVTPNTITW-SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC-NILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 387 ~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
-.+....++ |..+| ..|.++|.+++..+.|++++-.+.. ..+..+. ..+..-|-+++.+--|-+.|+.+...++
T Consensus 417 ~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 417 IRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 888766555 55555 5567789999999999887765542 2233333 3444568999999999999998877665
Q ss_pred ccc
Q 008265 465 QVA 467 (572)
Q Consensus 465 ~~~ 467 (572)
.+.
T Consensus 493 ~pE 495 (557)
T KOG3785|consen 493 TPE 495 (557)
T ss_pred Ccc
Confidence 443
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.73 E-value=1.5e-05 Score=75.05 Aligned_cols=203 Identities=9% Similarity=-0.030 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNV 300 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~ 300 (572)
..|..+...|...|+.++|...|+...+... .+...|+.+...+...|++++|.+.|+...+. .|+ ...|..+-.+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4566777888999999999999999888643 35789999999999999999999999999876 454 3444444333
Q ss_pred --hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcccc
Q 008265 301 --NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (572)
Q Consensus 301 --~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 378 (572)
..|++++|.+.|+...+.. |+..........+...++.++|...|.+.... ..++...+ .+...+ .|+
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-----~~~~~~~~-~~~~~~--lg~ 211 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-----LDKEQWGW-NIVEFY--LGK 211 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-----CCccccHH-HHHHHH--ccC
Confidence 4589999999999998754 33322222222344567899999999775531 23333222 233333 344
Q ss_pred HHH--HHHHHHHHHHCCC--C-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008265 379 WQM--ALKVKEDMLSAGV--T-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (572)
Q Consensus 379 ~~~--a~~~~~~m~~~g~--~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 438 (572)
.+. +++.+.+-.+..+ . .....|..+...+.+.|+.++|...|++..+.+ .||..-+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 212 ISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred CCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 433 3333322112211 1 234689999999999999999999999999875 445554444
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.73 E-value=0.00036 Score=68.64 Aligned_cols=368 Identities=12% Similarity=0.092 Sum_probs=198.7
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
..-|..+.-.+....++++|+..|......+.+ . .+++..+-..-.+.|+++...+.-.++.+. .|+...
T Consensus 75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d--N------~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra 144 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD--N------LQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRA 144 (700)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC--c------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHH
Confidence 344444444444456777777777777765333 2 222333323334566666666666555554 333321
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHH------HHHHHhcCCChHHHHHhhhcCCCch---
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR------IVQLCVNKPDVNLAIRYACIVPRAD--- 221 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~------ll~~~~~~g~~~~a~~~~~~~~~~~--- 221 (572)
+...+ .- ..--.|+...|..+++...+....+.+...+.. -.....+.|..++|++.+....+..
T Consensus 145 ~w~~~---Av---s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk 218 (700)
T KOG1156|consen 145 SWIGF---AV---AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK 218 (700)
T ss_pred HHHHH---HH---HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH
Confidence 11111 11 111257888888888887765532223233221 2344556777777777766544332
Q ss_pred -hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH-HHHHHhcCCHHHHH-HHHHHHHhCCCCCCH-HHHHHH
Q 008265 222 -ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTI-IDVCGICGDYMKSR-AIYEDLRSQNVTLNI-YVFNSL 297 (572)
Q Consensus 222 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~-~~~~~m~~~g~~p~~-~~~~~l 297 (572)
..-.+-...+.+.+++++|..++..+..+. ||...|... ..++.+-.+.-+++ .+|....+. .|.. ..-..=
T Consensus 219 la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlp 294 (700)
T KOG1156|consen 219 LAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLP 294 (700)
T ss_pred HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccccccchhcc
Confidence 233345667778888888888888887753 555555444 34443333333333 556555443 1111 000111
Q ss_pred HHHhcC-C-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhCC---------CCCCHHH
Q 008265 298 MNVNAH-D-LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE-AKGV---------LKLDVFT 365 (572)
Q Consensus 298 l~~~~~-~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~---------~~~~~~~ 365 (572)
+....+ + .+..-.++..+.+.|+++ ++..+...|-.-...+-.+++.-.+...- ..|. -+|+...
T Consensus 295 lsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 295 LSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred HHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 111111 2 233344555666666653 33333333332222221222222222110 0100 1455555
Q ss_pred HH--HHHHHHHccccHHHHHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 366 YS--TIVKVFADAKWWQMALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (572)
Q Consensus 366 ~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 442 (572)
|+ .++..|-+.|+++.|+..++....+ .|+. ..|..-.+.+...|++++|..++++..+.. .+|...=.--..-
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKY 448 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHH
Confidence 54 4566778889999999998888876 6665 345556677888899999999998888765 4555443344555
Q ss_pred HHHhCCHhHHHHHHHHhhhccc
Q 008265 443 CVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
..+.++.++|.++.....+.|.
T Consensus 449 mLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHccccHHHHHHHHHhhhccc
Confidence 6677888888888888777663
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=0.00025 Score=65.90 Aligned_cols=233 Identities=10% Similarity=0.082 Sum_probs=118.7
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHH
Q 008265 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVF 294 (572)
Q Consensus 217 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~ 294 (572)
++.+......+...+...|+.++|...|+...-. .|+.. ........+.+.|+++....+...+.... ........
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 4555566667777777777777777777766542 23221 11111222356667777666666665431 11111111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008265 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (572)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 374 (572)
..-+.-+.++++.|+.+-.+.++.+.. +...+-.=...+...|+.++|.-.|+....+ -+-+...|.-|+.+|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-----ap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML-----APYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc-----chhhHHHHHHHHHHHH
Confidence 111112335677777777666654322 3333333334566677777777777777653 1345567777777777
Q ss_pred ccccHHHHHHHHHHHHHCCCCCchhhHHHHH-HHHH-HcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhCCHhH
Q 008265 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLI-NACA-NAGLVEQAMHLFEEMLQAGCEPNS-QCCNILLQACVEACQFDR 451 (572)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~ 451 (572)
..|.+.+|.-+-++..+. +.-+..+...+- ..|. ...--++|..+++.-... .|+. ...+.+..-|...|..+.
T Consensus 380 A~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred hhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccch
Confidence 777777766655544332 111223322221 1111 111224555555554433 3332 334444555555666666
Q ss_pred HHHHHHHhh
Q 008265 452 AFRLFRSWT 460 (572)
Q Consensus 452 A~~~~~~m~ 460 (572)
+..++++-.
T Consensus 457 ~i~LLe~~L 465 (564)
T KOG1174|consen 457 IIKLLEKHL 465 (564)
T ss_pred HHHHHHHHH
Confidence 666665543
No 78
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2e-08 Score=59.00 Aligned_cols=30 Identities=37% Similarity=0.681 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 429 CEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 429 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
+.||..||++||.+|++.|++++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 333333333333333333333333333333
No 79
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2.5e-08 Score=58.58 Aligned_cols=34 Identities=38% Similarity=0.763 Sum_probs=32.2
Q ss_pred CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 392 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
+|+.||..||++||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999984
No 80
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.70 E-value=1e-06 Score=81.64 Aligned_cols=224 Identities=14% Similarity=0.135 Sum_probs=147.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL---MN 299 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l---l~ 299 (572)
...-+.+++...|+++.+. .++... -.|.......+...+...++-+.+..-+++....+..++..++..+ +.
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3445677888888877544 344333 2566666555555444435556666655555444333233333222 22
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----
Q 008265 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD---- 375 (572)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 375 (572)
...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+ ...|. +...+..++..
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~------~~eD~-~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ------IDEDS-ILTQLAEAWVNLATG 179 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC------CSCCH-HHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCcH-HHHHHHHHHHHHHhC
Confidence 2347899998887643 3677788889999999999999999999986 33343 34445555443
Q ss_pred cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH-hHHHH
Q 008265 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF-DRAFR 454 (572)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~ 454 (572)
.+.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++.+....+ +-+..+...++.+....|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 44689999999998765 45688889999999999999999999999987654 34567777888888888887 77888
Q ss_pred HHHHhhhcccc
Q 008265 455 LFRSWTLSKTQ 465 (572)
Q Consensus 455 ~~~~m~~~~~~ 465 (572)
++.+++...+.
T Consensus 258 ~l~qL~~~~p~ 268 (290)
T PF04733_consen 258 YLSQLKQSNPN 268 (290)
T ss_dssp HHHHCHHHTTT
T ss_pred HHHHHHHhCCC
Confidence 99988865543
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=0.00049 Score=67.03 Aligned_cols=117 Identities=15% Similarity=0.009 Sum_probs=82.0
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc--hhHH-HHHHHHHHhcCCHHHH
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA--DILF-CNFVREFGKKRDLVSA 240 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~-~~li~~~~~~g~~~~a 240 (572)
.....|++++|.....+++..+ |++......-+-+..+.+.+++|+.+.+.-+.. ..++ .-=..+..+.++.++|
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 4456799999999999998765 666666777777888899999999776654421 1111 1113334467899999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008265 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (572)
Q Consensus 241 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 286 (572)
+..++...+ .+..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 99 lk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 99 LKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 998883322 133355555666788999999999999997764
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.64 E-value=0.00052 Score=67.56 Aligned_cols=380 Identities=13% Similarity=0.068 Sum_probs=226.2
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (572)
+..++.+.|+. ...|..+.-.=+..|+++-....-....+. .|.. ...+.....++.-.|++..|..+++.
T Consensus 98 y~nAl~~~~dN-~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~------ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 98 YRNALKIEKDN-LQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQ------RASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred HHHHHhcCCCc-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhh------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566665 566665555555566776666666666655 2221 22344555567778999999999998
Q ss_pred hhhcCC-CCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC
Q 008265 139 LNELGV-APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (572)
Q Consensus 139 m~~~~~-~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 217 (572)
..+... .|+...+..... ++--.+.+.+.|..+.|++-+..-...- .+....--.-...+.+.+++++|..++..+
T Consensus 169 f~~t~~~~~s~~~~e~se~-~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSEL-LLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHhhccCCCHHHHHHHHH-HHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 887742 455443333332 2333345567888888888776543321 112122224456677889999998887664
Q ss_pred ----CCchhHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008265 218 ----PRADILFCNFVREFGKKRDLVSAL-RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292 (572)
Q Consensus 218 ----~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 292 (572)
|++-.-|-.+..++.+-.+.-++. .+|....+.- +.....-..=++......-.+..-.++..+.+.|+++--.
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~ 324 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK 324 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh
Confidence 444344444555554333333333 6776665531 1110000111111111222344556677777888765443
Q ss_pred HHHHHHHHhcCChHH----HHHHHHHHHHcC----------CCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 008265 293 VFNSLMNVNAHDLKF----TLEVYKNMQKLG----------VMADMASYN--ILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (572)
Q Consensus 293 ~~~~ll~~~~~~~~~----a~~~~~~m~~~~----------~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 356 (572)
...++..--- ..+- +..+...+...| -+|....|+ .+++.+-+.|+++.|...++....
T Consensus 325 dl~SLyk~p~-k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---- 399 (700)
T KOG1156|consen 325 DLRSLYKDPE-KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---- 399 (700)
T ss_pred hhHHHHhchh-HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc----
Confidence 3333322100 1111 112222221111 145555554 467788899999999999999886
Q ss_pred CCCCCCHH-HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008265 357 GVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435 (572)
Q Consensus 357 ~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 435 (572)
..|+.+ .|.+=.+.+...|++++|..++++..+... +|...-.-......++.+.++|.++.....+.|. +..-
T Consensus 400 --HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~ 474 (700)
T KOG1156|consen 400 --HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVN 474 (700)
T ss_pred --cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhh
Confidence 356654 666667889999999999999999988753 4666655677778889999999999999988774 2222
Q ss_pred HHH----------HHHHHHHhCCHhHHHHHHHHhhh
Q 008265 436 CNI----------LLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 436 ~~~----------li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
... =..+|.+.|++.+|.+=|..+.+
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 111 13467788888888777766544
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=0.00016 Score=64.04 Aligned_cols=288 Identities=10% Similarity=0.062 Sum_probs=176.9
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhh
Q 008265 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (572)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 152 (572)
.++..+..+.+..++.+|++++..-.++..+ +...++.+...|....++..|-+.|+++... .|...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~--------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~--- 78 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR--------SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELE--- 78 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHH---
Confidence 3567777788899999999999988777443 1444555666778888999999999998775 45332
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHH--HHhcCCChHHHHHhhhcCCCc--hhHHHHHH
Q 008265 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ--LCVNKPDVNLAIRYACIVPRA--DILFCNFV 228 (572)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~--~~~~~~li 228 (572)
-|..+- ...+.+.+.+.+|+++...|.+. +....-..-++ .....+++..+..+.++.|.. ..+.+...
T Consensus 79 -qYrlY~--AQSLY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~g 151 (459)
T KOG4340|consen 79 -QYRLYQ--AQSLYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLG 151 (459)
T ss_pred -HHHHHH--HHHHHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccch
Confidence 333322 13455678999999998888652 11111111122 233578888889999998842 35666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------CHH--
Q 008265 229 REFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-------------NIY-- 292 (572)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-------------~~~-- 292 (572)
-...+.|+++.|.+-|....+- |.. ....||..+.. .+.|+++.|++...++.++|++- |+.
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsv 229 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSV 229 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcc
Confidence 7777899999999999988776 454 45678877764 56789999999999998887532 211
Q ss_pred ------HHHHHHHHh---------cCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 008265 293 ------VFNSLMNVN---------AHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (572)
Q Consensus 293 ------~~~~ll~~~---------~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 356 (572)
.-+.++.++ .++.+.|.+.+-.|.- ..-..|++|...+.-.-. .+++-+..+-+.-+.+.
T Consensus 230 gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~--- 305 (459)
T KOG4340|consen 230 GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ--- 305 (459)
T ss_pred cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc---
Confidence 112222221 1455666666655532 223344555443322111 23333333333333331
Q ss_pred CCCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Q 008265 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (572)
Q Consensus 357 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (572)
-+-...||..++-.||++.-++-|-.++.+
T Consensus 306 --nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 306 --NPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred --CCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 122344666666666666666666666544
No 84
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.62 E-value=0.00021 Score=79.40 Aligned_cols=338 Identities=12% Similarity=0.001 Sum_probs=202.6
Q ss_pred hhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCC-----Ccc--c
Q 008265 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-----VKE--L 191 (572)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~--~ 191 (572)
....+...|+++.+..++..+.......+.. ....... .+...|+++++..+++.....--. +.. .
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~----l~~~~a~---~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~ 452 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPR----LVLLQAW---LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQA 452 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcc----hHHHHHH---HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHH
Confidence 3344566788888777777653221111111 1111111 112368999999988876543110 001 1
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcC----CCch-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC--cHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIV----PRAD-----ILFCNFVREFGKKRDLVSALRAYDASKKHLS---SP--NMY 257 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~--~~~ 257 (572)
.....+...+...|++++|...++.. +... ...+.+...+...|+++.|...+.+.....- .+ ...
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 11122344566799999998877653 2221 3455677778889999999999988754311 11 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHH--HHHhcCChHHHHHHHHHHHHc--CCCC--CH
Q 008265 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQ----NVT--L-NIYVFNSL--MNVNAHDLKFTLEVYKNMQKL--GVMA--DM 324 (572)
Q Consensus 258 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~l--l~~~~~~~~~a~~~~~~m~~~--~~~~--~~ 324 (572)
.+..+...+...|++++|...+++.... +.. + ....+..+ +....|++++|...+.+.... ...+ ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 4556667788899999999998886542 221 1 11222222 222348999999988877542 1112 23
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHccccHHHHHHHHHHHHHCCCCCch---h
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT--YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT---I 399 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~ 399 (572)
..+..+...+...|+.++|.+.+.................. ....+..+...|+.+.|.+.+............ .
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 34444566778899999999999998764322211111101 111234455688999999998775542211111 1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQA----GCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+..+..++...|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 1345677788999999999999988652 32222 2456666778889999999999999887644
No 85
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.60 E-value=0.00072 Score=65.16 Aligned_cols=121 Identities=11% Similarity=0.064 Sum_probs=77.7
Q ss_pred hhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHh
Q 008265 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKL 139 (572)
Q Consensus 60 ~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m 139 (572)
-+.++.+|.. +.+|..||+-+-.. ..+++.+.++++...-+. +..++-.-+..-...++++....+|.+.
T Consensus 10 ~~rie~nP~d-i~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~--------s~r~W~~yi~~El~skdfe~VEkLF~RC 79 (656)
T KOG1914|consen 10 RERIEENPYD-IDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPS--------SPRAWKLYIERELASKDFESVEKLFSRC 79 (656)
T ss_pred HHHHhcCCcc-HHHHHHHHHHHccC-CHHHHHHHHHHHhccCCC--------CcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4556667776 99999999988776 999999999999876432 1333444566777889999999999888
Q ss_pred hhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHH----HHHHHHH-HHhCCCCCcccchHHHHH
Q 008265 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEM----FVGLMEV-LEEFRLPVKELDEEFRIV 198 (572)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~----a~~~~~~-~~~~~~~~~~~~~~~~ll 198 (572)
...-+.-| ++.+++.....- .|.... ....|+- +.+.|+.+.+...|+.-+
T Consensus 80 LvkvLnlD------LW~lYl~YVR~~--~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi 135 (656)
T KOG1914|consen 80 LVKVLNLD------LWKLYLSYVRET--KGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYI 135 (656)
T ss_pred HHHHhhHh------HHHHHHHHHHHH--ccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHH
Confidence 77644433 444455433332 222222 2223332 445566666666666443
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=0.00065 Score=68.63 Aligned_cols=318 Identities=15% Similarity=0.151 Sum_probs=175.9
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhh-cC--------ChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhh
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVS-EG--------NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~--------~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~ 140 (572)
+...|..+.+.+.+.++++-|.-.+-.|... |. +|+. .+ ..........|.+++|+.+|.+.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e------~e--akvAvLAieLgMlEeA~~lYr~ck 827 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE------DE--AKVAVLAIELGMLEEALILYRQCK 827 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc------hh--hHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678888999999999998888877777532 21 1111 00 112222457788888888888876
Q ss_pred hcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc
Q 008265 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA 220 (572)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 220 (572)
+.. ++|-+ +.. .|.|++|.++-+.--+ +..+ .+|..-.+-+...++.+.|+++|++....
T Consensus 828 R~D----------LlNKl---yQs---~g~w~eA~eiAE~~DR--iHLr--~Tyy~yA~~Lear~Di~~AleyyEK~~~h 887 (1416)
T KOG3617|consen 828 RYD----------LLNKL---YQS---QGMWSEAFEIAETKDR--IHLR--NTYYNYAKYLEARRDIEAALEYYEKAGVH 887 (1416)
T ss_pred HHH----------HHHHH---HHh---cccHHHHHHHHhhccc--eehh--hhHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 641 22222 212 6888888887664322 2222 34555556666677788888877663111
Q ss_pred ------------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------------CCCcH
Q 008265 221 ------------------------DILFCNFVREFGKKRDLVSALRAYDASKKHL--------------------SSPNM 256 (572)
Q Consensus 221 ------------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------------------~~~~~ 256 (572)
...|.-.....-..|+++.|+.+|......- -.-|.
T Consensus 888 afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~ 967 (1416)
T KOG3617|consen 888 AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDK 967 (1416)
T ss_pred HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccH
Confidence 1233334444445677777777776554321 01245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQN--------VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYN 328 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 328 (572)
...-.+.+.|-..|++.+|..+|.+.+.-. -..+...+|..+..-..+.-.|-+.|++.. .. +.
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~~-----~~ 1039 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---GY-----AH 1039 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---hh-----hh
Confidence 566678888888899999988887764210 112334444443333334444555554432 11 22
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH-----HH-HhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC----------
Q 008265 329 ILLKACCLAGNTVLAQEIYGEVKH-----LE-AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA---------- 392 (572)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------- 392 (572)
..+..|-+.|.+.+|.++--.-.+ +. ++-....|....+--.+.|+...++++|..++-..++-
T Consensus 1040 ~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~ 1119 (1416)
T KOG3617|consen 1040 KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNR 1119 (1416)
T ss_pred HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334456777777776664211111 00 01112345556666666677777777777665544321
Q ss_pred CC----------------CCch----hhHHHHHHHHHHcCCHHHHHHHHHH
Q 008265 393 GV----------------TPNT----ITWSSLINACANAGLVEQAMHLFEE 423 (572)
Q Consensus 393 g~----------------~p~~----~~~~~li~~~~~~g~~~~a~~~~~~ 423 (572)
|+ .|+. .....+...|.+.|.+..|-+-|.+
T Consensus 1120 nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1120 NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 11 1222 2345666677777777666555543
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.57 E-value=4.2e-05 Score=65.36 Aligned_cols=199 Identities=12% Similarity=-0.046 Sum_probs=102.1
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
..+...|.-.|...|+...|..-+++.++. +|+. ..++..+...|.+.|..+.|.+.|++..+. .|+.-
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~G- 103 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEH--DPSY------YLAHLVRAHYYQKLGENDLADESYRKALSL--APNNG- 103 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc------HHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCcc-
Confidence 445556666666777777777777776666 3332 223333444556666666666666666554 33211
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHH
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~ 230 (572)
.++|-+-. =++..|++++|...|+.....-.-+. ...+|..+.-+
T Consensus 104 --dVLNNYG~---FLC~qg~~~eA~q~F~~Al~~P~Y~~------------------------------~s~t~eN~G~C 148 (250)
T COG3063 104 --DVLNNYGA---FLCAQGRPEEAMQQFERALADPAYGE------------------------------PSDTLENLGLC 148 (250)
T ss_pred --chhhhhhH---HHHhCCChHHHHHHHHHHHhCCCCCC------------------------------cchhhhhhHHH
Confidence 11111111 12335666666666665544321111 12455666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHH
Q 008265 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFT 308 (572)
Q Consensus 231 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a 308 (572)
..+.|+.+.|.+.|.+..+.... .....-.+.....+.|++..|..+++.....+. ++..+.-..|.. ..|+.+.+
T Consensus 149 al~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 149 ALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHH
Confidence 66666666666666665554322 123344555555666666666666666655543 444444333332 33555555
Q ss_pred HHHHHHHHH
Q 008265 309 LEVYKNMQK 317 (572)
Q Consensus 309 ~~~~~~m~~ 317 (572)
-+.=..+.+
T Consensus 227 ~~Y~~qL~r 235 (250)
T COG3063 227 QRYQAQLQR 235 (250)
T ss_pred HHHHHHHHH
Confidence 444444433
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=0.00065 Score=63.22 Aligned_cols=359 Identities=8% Similarity=0.007 Sum_probs=200.6
Q ss_pred HHHHhHhhcCChhHHHHHHHHHHhhcC---Ch---------hHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcC
Q 008265 76 DMASKLAKDGRLEEFAMIVESVVVSEG---NV---------SKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (572)
Q Consensus 76 ~li~~~~~~g~~~~A~~~~~~m~~~~~---~p---------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~ 143 (572)
.+++..-+...+..|.+.|........ .| .++-..+..+.....+..|...++-+.|+..+.......
T Consensus 48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~ 127 (564)
T KOG1174|consen 48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL 127 (564)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence 344445555667777777777664321 11 112222334445556777777888888888887665543
Q ss_pred CCCcchhhhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHhCCCCCcccchHHHHHHHHh---cCCChHHHHHhhh-cCC
Q 008265 144 VAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV---NKPDVNLAIRYAC-IVP 218 (572)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~g~~~~a~~~~~-~~~ 218 (572)
-.| ..++.+.-... +.+ +.++....-+-+++- | ..... |.+.. -.|.-........ ..+
T Consensus 128 r~p-------~inlMla~l~~--~g~r~~~~vl~ykevvrec---p---~aL~~-i~~ll~l~v~g~e~~S~~m~~~~~~ 191 (564)
T KOG1174|consen 128 RSP-------RINLMLARLQH--HGSRHKEAVLAYKEVIREC---P---MALQV-IEALLELGVNGNEINSLVMHAATVP 191 (564)
T ss_pred cch-------hHHHHHHHHHh--ccccccHHHHhhhHHHHhc---c---hHHHH-HHHHHHHhhcchhhhhhhhhheecC
Confidence 333 23333221111 112 223333322222221 1 11111 11111 1111111111111 123
Q ss_pred CchhHHHHHHHHHH--hcCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---
Q 008265 219 RADILFCNFVREFG--KKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY--- 292 (572)
Q Consensus 219 ~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--- 292 (572)
+........+.+++ ..++...|...+-.+... -++-|......+.+.+...|+.++|...|++.+.. .|+..
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhH
Confidence 33334444444443 445555555555444332 35667889999999999999999999999998865 34332
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008265 293 -VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (572)
Q Consensus 293 -~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~ 371 (572)
.|..++. .-|+++....+...+.... +-....|-.-........+++.|..+-++..+.. +.+...|-.-..
T Consensus 270 D~Ya~LL~-~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-----~r~~~alilKG~ 342 (564)
T KOG1174|consen 270 DLYAVLLG-QEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-----PRNHEALILKGR 342 (564)
T ss_pred HHHHHHHH-hccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-----cccchHHHhccH
Confidence 2333332 2356666666666655421 1234445444455566788899998888887631 223334444445
Q ss_pred HHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHH-hCCH
Q 008265 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL-QACVE-ACQF 449 (572)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~-~g~~ 449 (572)
.+...|+.++|.-.|+....... -+..+|..|+.+|...|++.+|.-+-++..+. +.-+..+...+. ..|.- ...-
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 67778999999999999887621 26789999999999999999998887776543 233455554442 33332 2234
Q ss_pred hHHHHHHHHhhh
Q 008265 450 DRAFRLFRSWTL 461 (572)
Q Consensus 450 ~~A~~~~~~m~~ 461 (572)
++|.+++++-.+
T Consensus 421 EKAKkf~ek~L~ 432 (564)
T KOG1174|consen 421 EKAKKFAEKSLK 432 (564)
T ss_pred HHHHHHHHhhhc
Confidence 788888876543
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.56 E-value=0.0013 Score=66.23 Aligned_cols=373 Identities=12% Similarity=0.029 Sum_probs=240.1
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
+...|..+.-++.+.|++..+.+.|++...--.. ..+.+...-..+...|.-..|+.+++.-....-.|+..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~--------~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG--------EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh--------hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 4678888888889999999999999987643221 24445556667788888889999998766653234422
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcc---cchHHHHHHHHhc----CCChH-------HHHHhhh
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE---LDEEFRIVQLCVN----KPDVN-------LAIRYAC 215 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~----~g~~~-------~a~~~~~ 215 (572)
..+-+..+.|.. +.+.++++++.-.+..+......+ ...+..+.-+|.. ..... ++++.++
T Consensus 394 ---s~~Lmasklc~e--~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 394 ---SVLLMASKLCIE--RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred ---hHHHHHHHHHHh--chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 233223333322 356777777766665542111100 1223333322222 12211 2333333
Q ss_pred cC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC
Q 008265 216 IV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLN 290 (572)
Q Consensus 216 ~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 290 (572)
.. +.+..+...+---|+..++++.|.+...+..+-+..-+...|..+.-.+...+++.+|+.+.+..... |..-.
T Consensus 469 ~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 32 44445555566678888999999999999988866778899999999999999999999998876543 21000
Q ss_pred ------------------HHHHHHHHHHh-------------------c------CChHHHH-------HHHH-HHHHcC
Q 008265 291 ------------------IYVFNSLMNVN-------------------A------HDLKFTL-------EVYK-NMQKLG 319 (572)
Q Consensus 291 ------------------~~~~~~ll~~~-------------------~------~~~~~a~-------~~~~-~m~~~~ 319 (572)
..|...++... + .+..++. .+.. +....|
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 01111111110 0 0111111 1111 001111
Q ss_pred ---------C--CCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 320 ---------V--MAD------MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 320 ---------~--~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
+ .|+ ...|......+.+.+..++|...+.+...+ .......|......+...|++++|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-----~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-----DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----chhhHHHHHHhhHHHHHHHhhHHH
Confidence 0 112 123445666778888888888777777653 345566777777788889999999
Q ss_pred HHHHHHHHHCCCCCc-hhhHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 383 LKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMH--LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
.+.|...... .|+ +....++..++.+.|+..-|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|-+.|...
T Consensus 704 ~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 704 KEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999988876 444 4678899999999998887777 999999886 668899999999999999999999999876
Q ss_pred hhcc
Q 008265 460 TLSK 463 (572)
Q Consensus 460 ~~~~ 463 (572)
.+..
T Consensus 781 ~qLe 784 (799)
T KOG4162|consen 781 LQLE 784 (799)
T ss_pred Hhhc
Confidence 6543
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=9.7e-05 Score=65.46 Aligned_cols=295 Identities=12% Similarity=0.037 Sum_probs=191.9
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
....+.|...|-...++..|...++++....+.-..|... -..++.+.+.+.+|+.+...|.+. |+...
T Consensus 44 rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY--------~AQSLY~A~i~ADALrV~~~~~D~---~~L~~ 112 (459)
T KOG4340|consen 44 RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY--------QAQSLYKACIYADALRVAFLLLDN---PALHS 112 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH--------HHHHHHHhcccHHHHHHHHHhcCC---HHHHH
Confidence 6777888888889999999999999998886654443321 234566889999999999888763 32221
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc-----hhHHH
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA-----DILFC 225 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~ 225 (572)
...-+...| . ...+++..+..+++++...+ +..+.+...-...+.|++++|.+-|+....- ...|+
T Consensus 113 ~~lqLqaAI----k-Yse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYn 183 (459)
T KOG4340|consen 113 RVLQLQAAI----K-YSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYN 183 (459)
T ss_pred HHHHHHHHH----h-cccccCcchHHHHHhccCCC----ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHH
Confidence 111111111 1 34688888999988875322 2333344444455789999999988875332 25676
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------cH---------------HHHHHHHHHHHhcCCHHHHHH
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHLSSP-------------NM---------------YICRTIIDVCGICGDYMKSRA 277 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~-------------~~---------------~~~~~ll~~~~~~g~~~~a~~ 277 (572)
..+..| +.|+++.|++...++.++|++- |+ ..+|.-...+.+.|+++.|.+
T Consensus 184 iALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e 262 (459)
T KOG4340|consen 184 LALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE 262 (459)
T ss_pred HHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHH
Confidence 665544 5699999999999998887531 11 223333344567799999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008265 278 IYEDLRSQ-NVTLNIYVFNSLMNVN-AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (572)
Q Consensus 278 ~~~~m~~~-g~~p~~~~~~~ll~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 355 (572)
.+-+|.-+ ....|++|.+.+.-.- .+++....+-+.-+.+.+. -...||..++-.||+..-++.|-.++.+-..+.-
T Consensus 263 aLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTy 341 (459)
T KOG4340|consen 263 ALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTY 341 (459)
T ss_pred HhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhH
Confidence 99998643 3456777776664443 3566666666666666654 4578999999999999999999998876433210
Q ss_pred hCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.-.+.+.|+.|=....-.-..+++++-+..+.
T Consensus 342 ---k~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 342 ---KFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred ---HHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 11244445443322233445666665555443
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.54 E-value=0.00034 Score=68.40 Aligned_cols=227 Identities=9% Similarity=-0.042 Sum_probs=136.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHH
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSL---MNV 300 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l---l~~ 300 (572)
...+...|++++|.++++...+..+ .+...+.. ...+.. .|..+.+.+.+.. ..+..|+......+ +..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 4456678999999999998877532 23334442 222333 3455555555544 12223443322222 233
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcccc
Q 008265 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV--FTYSTIVKVFADAKW 378 (572)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~ 378 (572)
..|++++|...+++..+.... +...+..+...+...|++++|...+++...... ..++. ..|..+...+...|+
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~---~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD---CSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC---CCcchhHHHHHHHHHHHHHCCC
Confidence 458999999999999886533 566778888999999999999999998876311 01232 345678888999999
Q ss_pred HHHHHHHHHHHHHCCC-CCchhhH-H--HHHHHHHHcCCHHHHHHH--HHHHHHcCCC--CCHHHHHHHHHHHHHhCCHh
Q 008265 379 WQMALKVKEDMLSAGV-TPNTITW-S--SLINACANAGLVEQAMHL--FEEMLQAGCE--PNSQCCNILLQACVEACQFD 450 (572)
Q Consensus 379 ~~~a~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~ 450 (572)
+++|.+++++...... .+..... + .++.-+...|....+.+. +......... ...........++...|+.+
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH
Confidence 9999999999864422 1111111 1 233334444433333322 1111111111 11122235667788899999
Q ss_pred HHHHHHHHhhhc
Q 008265 451 RAFRLFRSWTLS 462 (572)
Q Consensus 451 ~A~~~~~~m~~~ 462 (572)
.|..+++.+...
T Consensus 282 ~a~~~L~~l~~~ 293 (355)
T cd05804 282 ALDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.53 E-value=8.8e-06 Score=75.53 Aligned_cols=147 Identities=13% Similarity=0.066 Sum_probs=62.5
Q ss_pred HHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH----hcCCHHH
Q 008265 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG----ICGDYMK 274 (572)
Q Consensus 199 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~g~~~~ 274 (572)
.++...|++++|++++... .+-......+..|.+.++++.|.+.++.|.+. ..|. +...+..+|. ....+.+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHcCCHHHHHHHHHcc-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHH
Confidence 3444556666666665554 22234444555555566666666666555543 2222 1222222222 1223555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHH
Q 008265 275 SRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT-VLAQEIYGEVK 351 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 351 (572)
|..+|+++.+. ..++..+.+.+..+ ..|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.+.+.+++
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 55555555433 22333333333222 224555555554444332221 333444444444444444 33444444444
No 93
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.52 E-value=0.0014 Score=64.56 Aligned_cols=328 Identities=11% Similarity=0.118 Sum_probs=196.2
Q ss_pred HhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHH
Q 008265 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (572)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (572)
+...+..+..+|++-.-...|+..... .|-.. +......+++-... .+-.+-++.++++.++. .|. ...
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALra--Lpvtq-H~rIW~lyl~Fv~~---~~lPets~rvyrRYLk~--~P~---~~e 173 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRA--LPVTQ-HDRIWDLYLKFVES---HGLPETSIRVYRRYLKV--APE---ARE 173 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHh--CchHh-hccchHHHHHHHHh---CCChHHHHHHHHHHHhc--CHH---HHH
Confidence 334455566778887778888776664 22111 22244444442222 56677888888887753 333 355
Q ss_pred HHHHHHhcCCChHHHHHhhhcCCCch-----------hHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCcHHHHHH
Q 008265 196 RIVQLCVNKPDVNLAIRYACIVPRAD-----------ILFCNFVREFGKKRDL---VSALRAYDASKKHLSSPNMYICRT 261 (572)
Q Consensus 196 ~ll~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~ 261 (572)
--+..++..++.++|.+-+..+.+++ ..|..+-...++.-+. -....++..+..+-..-=...|+.
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHH
Confidence 56777888888888888776654432 4455444444443332 234445555544321122468999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc------------------C------ChHHHHHHHHHHHH
Q 008265 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------------------H------DLKFTLEVYKNMQK 317 (572)
Q Consensus 262 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~------------------~------~~~~a~~~~~~m~~ 317 (572)
|.+-|.+.|.+++|.++|++....- .+..-|+.+..+|+ + +++-.+..|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 9999999999999999999987762 33333444433332 1 23344555555544
Q ss_pred cCC-----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHccccHH
Q 008265 318 LGV-----------MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD------VFTYSTIVKVFADAKWWQ 380 (572)
Q Consensus 318 ~~~-----------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~ 380 (572)
... +.+...|..-+.. ..|+..+-...|.+..+. +.|- ...|..+.+.|-..|+++
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-----vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-----VDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-----cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 321 1233444443332 346677778888877653 2222 346888899999999999
Q ss_pred HHHHHHHHHHHCCCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------CCCC------CHHHHHHHH
Q 008265 381 MALKVKEDMLSAGVTPN---TITWSSLINACANAGLVEQAMHLFEEMLQA-----------GCEP------NSQCCNILL 440 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----------~~~p------~~~~~~~li 440 (572)
.|..+|++..+...+-- ..+|-.-...=.+..+++.|+++.+..... +.++ +...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 99999999887643311 123333334444667788888877766421 1111 233455556
Q ss_pred HHHHHhCCHhHHHHHHHHhhhcc
Q 008265 441 QACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+.--..|-++....+|+++.+..
T Consensus 485 DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHh
Confidence 66666778888888888877644
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.52 E-value=0.00015 Score=62.15 Aligned_cols=199 Identities=13% Similarity=-0.009 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
.+...|.-.|.+.|+...|..-+++..++... +..+|..+...|.+.|+.+.|.+-|+...+. .|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~----------- 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSL--APN----------- 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCC-----------
Confidence 34445666677777777777777776665321 3446666666667777777777666666554 222
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
+..+.|....-+|..|++++|...|+..... ....--..+|..+.-+..+.|+.+.
T Consensus 102 ---------------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~---P~Y~~~s~t~eN~G~Cal~~gq~~~ 157 (250)
T COG3063 102 ---------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD---PAYGEPSDTLENLGLCALKAGQFDQ 157 (250)
T ss_pred ---------------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC---CCCCCcchhhhhhHHHHhhcCCchh
Confidence 3444455555555666666666666665541 1111122355555555556666666
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
|.+.|++..+.... ...+.-.+.....+.|++-.|..+++.....+. ++..+....|+.-...|+-+.+-+.=..+.
T Consensus 158 A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 158 AEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 66666665554222 223444555555566666666666666655543 555555555555556666665555544443
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.52 E-value=0.00074 Score=61.30 Aligned_cols=330 Identities=12% Similarity=0.067 Sum_probs=198.0
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
..-...+-..+..+|++.+|+..|...++- +|+.|.. +..-...|...|+-..|+.=|.+..+. .||
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~a------ifrRaT~yLAmGksk~al~Dl~rVlel--KpD--- 104 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQA------IFRRATVYLAMGKSKAALQDLSRVLEL--KPD--- 104 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHH------HHHHHHHHhhhcCCccchhhHHHHHhc--Ccc---
Confidence 344455677788889999999999888766 6665443 333445577888888888888877774 676
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHH
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~ 230 (572)
.+..-+.....+.+.|.+++|..=|+.+++... .+ |...+|.+-+..+.+ .......+..
T Consensus 105 ---F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~--s~--------------~~~~eaqskl~~~~e-~~~l~~ql~s 164 (504)
T KOG0624|consen 105 ---FMAARIQRGVVLLKQGELEQAEADFDQVLQHEP--SN--------------GLVLEAQSKLALIQE-HWVLVQQLKS 164 (504)
T ss_pred ---HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC--Cc--------------chhHHHHHHHHhHHH-HHHHHHHHHH
Confidence 334444444455678999999999998887542 11 111111111111110 0222334555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHhcCChHHHH
Q 008265 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL-MNVNAHDLKFTL 309 (572)
Q Consensus 231 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~a~ 309 (572)
+...|+...|+.....+.+-. +-|+..|..-..+|...|++..|+.-+....+..-..+...|.+- +.-..|+.+..+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 667799999999999888853 237778888888999999999888777666554222222222211 111236777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHH
Q 008265 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (572)
Q Consensus 310 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 389 (572)
...++..+. .||...+-. ....+.+..+.++.|.+ ....++|.++++..+..
T Consensus 244 ~~iRECLKl--dpdHK~Cf~------~YKklkKv~K~les~e~--------------------~ie~~~~t~cle~ge~v 295 (504)
T KOG0624|consen 244 KEIRECLKL--DPDHKLCFP------FYKKLKKVVKSLESAEQ--------------------AIEEKHWTECLEAGEKV 295 (504)
T ss_pred HHHHHHHcc--CcchhhHHH------HHHHHHHHHHHHHHHHH--------------------HHhhhhHHHHHHHHHHH
Confidence 777766653 344432211 11112222223333322 22345566666666665
Q ss_pred HHCCCCCchhh---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 390 LSAGVTPNTIT---WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 390 ~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+.......+. +..+-.++...|++.+|++.-.+..+.. +.|+.++.--..+|.-..+++.|+.-|+...+.+
T Consensus 296 lk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 296 LKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 55532212233 3445566677788888888888877652 2347777777788888888888888888776544
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.51 E-value=0.00039 Score=69.24 Aligned_cols=240 Identities=16% Similarity=0.058 Sum_probs=131.0
Q ss_pred HHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 008265 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (572)
Q Consensus 197 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 276 (572)
-++++...|+-+.|-++-. ++----+.|..|.+.|...+|.+....=.. +..|......+..++.+..-+++|=
T Consensus 595 y~q~l~dt~qd~ka~elk~----sdgd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkag 668 (1636)
T KOG3616|consen 595 YLQALMDTGQDEKAAELKE----SDGDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAG 668 (1636)
T ss_pred HHHHHHhcCchhhhhhhcc----ccCccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhh
Confidence 3445555566555544321 111223457778888887777665432111 2235555555555555555555555
Q ss_pred HHHHHHHhCCC------CCCHHHHHHHHHHhc-----CChHHHHHHHHH-HHHcCCCC----CHHHHHHHHHHHHHcCCh
Q 008265 277 AIYEDLRSQNV------TLNIYVFNSLMNVNA-----HDLKFTLEVYKN-MQKLGVMA----DMASYNILLKACCLAGNT 340 (572)
Q Consensus 277 ~~~~~m~~~g~------~p~~~~~~~ll~~~~-----~~~~~a~~~~~~-m~~~~~~~----~~~~~~~ll~~~~~~g~~ 340 (572)
++|+++..-.- +-|.+.-..-+.-++ -.+++++...-. ..+..-.. ........+.+......|
T Consensus 669 dlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew 748 (1636)
T KOG3616|consen 669 DLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEW 748 (1636)
T ss_pred hHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhh
Confidence 55555532100 001111000010011 022233221111 11100000 011122345566677888
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 008265 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420 (572)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 420 (572)
.+|+.+++.+... +.-..-|..+...|+..|+++.|.++|.+.- .++-.|..|.+.|+|++|.++
T Consensus 749 ~kai~ildniqdq------k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 749 KKAISILDNIQDQ------KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhHhHHHHhhhh------ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 8899888888752 3334467778889999999999999987642 256678889999999999888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 421 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
-.+.. |-......|.+-..-+-+.|++.+|.++|-.+
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 77664 22334555666666677888888888877543
No 97
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.0021 Score=66.62 Aligned_cols=217 Identities=13% Similarity=0.107 Sum_probs=130.6
Q ss_pred CCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 204 ~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
-++.+.|.++-++... +.+|+.+..+-.+.|.+.+|.+-|-+. -|...|..+++...+.|.|++-.+.+...+
T Consensus 1088 i~~ldRA~efAe~~n~-p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNE-PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhhHHHHHHHHHhhCC-hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3455555555444433 257777777777777777777666432 255677777888888888888777777777
Q ss_pred hCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH
Q 008265 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363 (572)
Q Consensus 284 ~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 363 (572)
++.-.|...+--.+..+..++..+..+++ .-||......+.+-|...|.++.|.-+|.. +
T Consensus 1161 kk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-------------v 1220 (1666)
T KOG0985|consen 1161 KKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN-------------V 1220 (1666)
T ss_pred HhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH-------------h
Confidence 66555555443333323334544433332 235666666667777777777766666543 3
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (572)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 443 (572)
.-|.-|...+...|++..|.+.-++.. +..||--+-.+|...+.+.- .+|...++-....-..-++.-|
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrl-----AQiCGL~iivhadeLeeli~~Y 1289 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRL-----AQICGLNIIVHADELEELIEYY 1289 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhH-----HHhcCceEEEehHhHHHHHHHH
Confidence 345566666777777777766655432 55677777677665544332 2333333334445566677777
Q ss_pred HHhCCHhHHHHHHHH
Q 008265 444 VEACQFDRAFRLFRS 458 (572)
Q Consensus 444 ~~~g~~~~A~~~~~~ 458 (572)
...|.+++...+++.
T Consensus 1290 q~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1290 QDRGYFEELISLLEA 1304 (1666)
T ss_pred HhcCcHHHHHHHHHh
Confidence 777777777776654
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=0.0012 Score=66.70 Aligned_cols=324 Identities=12% Similarity=0.105 Sum_probs=189.3
Q ss_pred hHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc-CC--------CCcchh
Q 008265 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL-GV--------APLELF 150 (572)
Q Consensus 80 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~-~~--------~p~~~~ 150 (572)
.|...|+.+.|.+-.+.+.+ -.++.++.+.+++..++|-|.-.+..|... |. .|+.
T Consensus 737 fyvtiG~MD~AfksI~~IkS-------------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e-- 801 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKS-------------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE-- 801 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhh-------------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--
Confidence 34556777777766665543 233555666777777777766666555443 11 1111
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc--hhHHHHHH
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA--DILFCNFV 228 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~li 228 (572)
+..-...+ ....|.+++|+.+|.+-.+ +..|-+.|-..|.+++|.++-+.-..- ..+|..-.
T Consensus 802 ~eakvAvL------AieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA 865 (1416)
T KOG3617|consen 802 DEAKVAVL------AIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYA 865 (1416)
T ss_pred hhhHHHHH------HHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHH
Confidence 11111111 1236999999999987654 444556677889999999986542211 15666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc----------CC---------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008265 229 REFGKKRDLVSALRAYDASKKH----------LS---------SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (572)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~m~~~----------~~---------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 289 (572)
..+-..+|.+.|++.|++...+ .+ ..|...|.-.-..+-..|+.|.|+.+|...++
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 7777788888888887753211 10 12444555555555566888888888887764
Q ss_pred CHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH------HhCCCCC
Q 008265 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE------AKGVLKL 361 (572)
Q Consensus 290 ~~~~~~~ll~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~ 361 (572)
|-.+++ ++.|+.++|-++-++-. |...+-.+...|-..|++.+|..+|-...... +.+ ..
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn--d~ 1008 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN--DM 1008 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CH
Confidence 233333 45588888887766532 66677778889999999999988887665421 111 11
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHH--------HHHcCC--CC
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE--------MLQAGC--EP 431 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~~~~--~p 431 (572)
+...+|..+ .....+.-.|-+.|++.. .. +...+-.|-+.|.+.+|+++-=+ +....+ ..
T Consensus 1009 ~d~L~nlal--~s~~~d~v~aArYyEe~g---~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s 1078 (1416)
T KOG3617|consen 1009 KDRLANLAL--MSGGSDLVSAARYYEELG---GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS 1078 (1416)
T ss_pred HHHHHHHHh--hcCchhHHHHHHHHHHcc---hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC
Confidence 222222211 112222333444444321 11 23334456777777777665322 122223 33
Q ss_pred CHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 432 NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
|....+--.+-|....++++|..++-..++
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 556666666777788888998888866543
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=9.6e-05 Score=73.54 Aligned_cols=212 Identities=13% Similarity=0.053 Sum_probs=119.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 303 (572)
-..+...+...|-...|..+|+++ ..|.-+|.+|...|+..+|..+..+..++ +||...|..+......
T Consensus 401 q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 334566666667777777666654 34555666666667666666666666653 5666666666555443
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 304 --DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 304 --~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
-+++|+++.+..-.. .-..+.......++++++.+.|+.-.++ -+.-..+|-.+-.+..+.+++..
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-----nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-----NPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-----CccchhHHHhccHHHHHHhhhHH
Confidence 256666666554321 0011111112245666666666655543 12234456666666666666666
Q ss_pred HHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 382 ALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
|.+.|...... .||. ..||.+-.+|.+.|+..+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.++.
T Consensus 538 av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 538 AVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 66666665544 3333 456666666666666666666666666554 3334445555555566666666666666654
Q ss_pred h
Q 008265 461 L 461 (572)
Q Consensus 461 ~ 461 (572)
.
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 3
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.36 E-value=0.0032 Score=70.13 Aligned_cols=331 Identities=9% Similarity=-0.041 Sum_probs=190.4
Q ss_pred HhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 008265 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (572)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 200 (572)
..+...|++.+|.......... . .....+......+...|+++.+..+++.+.... ...+..........
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~------~---~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~ 418 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDA------Q---LLRDILLQHGWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCH------H---HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHH
Confidence 3455566666665544333111 1 122333333334445677777777766542111 11111222334455
Q ss_pred HhcCCChHHHHHhhhcC----CC-----c----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc----HHHHHHHH
Q 008265 201 CVNKPDVNLAIRYACIV----PR-----A----DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTII 263 (572)
Q Consensus 201 ~~~~g~~~~a~~~~~~~----~~-----~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll 263 (572)
+...|++++|...+... .. . ......+...+...|+++.|...++...+.....+ ....+.+.
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 56788999887776542 11 1 12222344566789999999999998765311112 12445566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC--C-CCCH--HHHHHH--HHHhcCChHHHHHHHHHHHH----cCCC--C-CHHHHHH
Q 008265 264 DVCGICGDYMKSRAIYEDLRSQN--V-TLNI--YVFNSL--MNVNAHDLKFTLEVYKNMQK----LGVM--A-DMASYNI 329 (572)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~m~~~g--~-~p~~--~~~~~l--l~~~~~~~~~a~~~~~~m~~----~~~~--~-~~~~~~~ 329 (572)
..+...|++++|...+++..... . .+.. ..+..+ +....|++++|...+++... .+.. + ....+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 67788999999999998876431 1 1111 122211 22245899999988887654 2221 1 2233445
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC-chhhH-----HH
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-NTITW-----SS 403 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~-----~~ 403 (572)
+...+...|++++|...+.+................+..+...+...|+.++|.+.+.+........ ....+ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 5566777899999999999887643222111123345556667788999999999988875421111 11111 11
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPN---SQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.+..+...|+.+.|...+........... ...+..+..++...|+.++|...+++...
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22445567899999998877653221111 11245666778899999999999988764
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=5e-05 Score=75.52 Aligned_cols=230 Identities=10% Similarity=0.068 Sum_probs=178.5
Q ss_pred HHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 008265 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (572)
Q Consensus 195 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 274 (572)
-.+...+...|-...|..+|+++ ..|..+|.+|...|+..+|..+..+..+ -+||...|..+.+......-+++
T Consensus 402 ~~laell~slGitksAl~I~Erl----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHH
Confidence 35678888899999999999876 6788899999999999999999988877 36889999999998888888999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008265 275 SRAIYEDLRSQNVTLNIYVFNSLMNVN-AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 353 (572)
|+++++..-.+ -...++.. .+ .++++++.+.|+.-.+.+. .-..+|-.+-.+..+.++++.|.+.|.....
T Consensus 476 awElsn~~sar----A~r~~~~~--~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvt- 547 (777)
T KOG1128|consen 476 AWELSNYISAR----AQRSLALL--ILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVT- 547 (777)
T ss_pred HHHHhhhhhHH----HHHhhccc--cccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhh-
Confidence 99999886543 00111111 12 3688999998887766432 2467788888888899999999999999887
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Q 008265 354 EAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEP 431 (572)
Q Consensus 354 ~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p 431 (572)
..||. ..||.+-.+|.+.|+-.+|...+.+..+.. .-+-..|...+....+.|.+++|.+.+.++.+.. ..-
T Consensus 548 -----L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 548 -----LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred -----cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 45654 589999999999999999999999999886 3355667777778889999999999999886421 111
Q ss_pred CHHHHHHHHHHHH
Q 008265 432 NSQCCNILLQACV 444 (572)
Q Consensus 432 ~~~~~~~li~~~~ 444 (572)
|..+...++....
T Consensus 622 d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 622 DDEVLLIIVRTVL 634 (777)
T ss_pred cchhhHHHHHHHH
Confidence 4444444444433
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=0.00033 Score=73.02 Aligned_cols=134 Identities=11% Similarity=-0.023 Sum_probs=112.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchh
Q 008265 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399 (572)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 399 (572)
..+...+..|.......|+.++|..+++...+ +.|+.. ....+...+.+.+++++|+...++....... +..
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~ 155 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAR 155 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHH
Confidence 34688888899999999999999999999988 456544 7788889999999999999999999887432 445
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
....+..++.+.|++++|..+|+++...+ .-+..++..+..++...|+.++|...|++..+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67778888899999999999999999843 345788899999999999999999999987653
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.27 E-value=0.00056 Score=73.05 Aligned_cols=231 Identities=14% Similarity=0.066 Sum_probs=148.6
Q ss_pred HhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008265 212 RYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH-LSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (572)
Q Consensus 212 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 287 (572)
++...-|.+...|-..|....+.++.++|.+++++.... ++.-. ...|.++++.-...|.-+...++|++..+.
T Consensus 1449 rlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-- 1526 (1710)
T KOG1070|consen 1449 RLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-- 1526 (1710)
T ss_pred HHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--
Confidence 334444555667777777777777777777777776554 11111 235666666666667777777777777664
Q ss_pred CCCHH-HHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--
Q 008265 288 TLNIY-VFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-- 362 (572)
Q Consensus 288 ~p~~~-~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-- 362 (572)
.|.. .|..|...|. +..++|-++++.|.+.-- -....|...+..+.+..+-+.|..++.+..+ .-|.
T Consensus 1527 -cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~------~lPk~e 1598 (1710)
T KOG1070|consen 1527 -CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALK------SLPKQE 1598 (1710)
T ss_pred -cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHh------hcchhh
Confidence 2332 3444444444 567777777777765321 3566777788888888887888888877765 2333
Q ss_pred -HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 008265 363 -VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS--QCCNIL 439 (572)
Q Consensus 363 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l 439 (572)
+....-.+..-.+.|+.+++..+|+.......+ -...|+..|+.=.++|+.+.+..+|++....++.|-. ..|.-.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 334445555566788888888888877765322 4467888888888888888888888888887776653 345555
Q ss_pred HHHHHHhCCHhHHH
Q 008265 440 LQACVEACQFDRAF 453 (572)
Q Consensus 440 i~~~~~~g~~~~A~ 453 (572)
+..=-+.|+-+.+.
T Consensus 1678 LeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHHHhcCchhhHH
Confidence 55555556544433
No 104
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0021 Score=56.48 Aligned_cols=153 Identities=13% Similarity=0.140 Sum_probs=82.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----c
Q 008265 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----A 376 (572)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 376 (572)
..+++++|++...... +......=+..+.+..+.+-|++.++.|.+. -+..+.+-|..+|.+ .
T Consensus 120 ~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-------ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 120 HDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-------DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred cCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------chHHHHHHHHHHHHHHhccc
Confidence 3355666665554411 2222333334455666666677777666642 234455555555443 3
Q ss_pred ccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC-HhHHHHH
Q 008265 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ-FDRAFRL 455 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~ 455 (572)
+.+..|.-+|++|.+. ..|+..+.+....++...|++++|..++++...+. .-+..+...+|.+-...|. .+-..+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 4566677777776653 35566666667777777777777777777766553 2234444444443333443 3444555
Q ss_pred HHHhhhccccccc
Q 008265 456 FRSWTLSKTQVAL 468 (572)
Q Consensus 456 ~~~m~~~~~~~~~ 468 (572)
+.+++......+.
T Consensus 265 l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 265 LSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhcCCcchH
Confidence 5666555444333
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.26 E-value=0.0004 Score=60.86 Aligned_cols=126 Identities=12% Similarity=0.121 Sum_probs=94.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcccc--H
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV-FADAKW--W 379 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~ 379 (572)
++.+++...++...+.+. .|...|..+...|...|++++|...|+...++. +.+...+..+..+ +...|+ .
T Consensus 53 ~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-----P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 53 QTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-----GENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred hhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCCCCc
Confidence 345666666666665543 377888888889999999999999999888741 3356677777776 466676 5
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008265 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (572)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 436 (572)
++|.+++++..+.+.. +...+..+...+.+.|++++|...|+++.+.. .|+..-+
T Consensus 127 ~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 127 PQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 8999999998887544 66778888888899999999999999988764 5555443
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.25 E-value=0.00029 Score=64.21 Aligned_cols=192 Identities=8% Similarity=-0.024 Sum_probs=127.3
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
....+..+...+...|++++|...|+.+....+. .. ....++..+...+...|++++|+..++++.+. .|+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~--~~---~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~ 104 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF--SP---YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHP 104 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ch---hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCC
Confidence 3677788888899999999999999999887442 11 11344566677888999999999999999886 44332
Q ss_pred hhhhhhHHHHHHHHHH-------hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchh
Q 008265 150 FDGSGFKLLKNECQRL-------LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI 222 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~-------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 222 (572)
.....+ +..+.+.+ .+.|+.+.|.+.|+.+.+.. |.+...+..+..... ..... ..
T Consensus 105 ~~~~a~--~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~---------~~ 167 (235)
T TIGR03302 105 DADYAY--YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL---------AG 167 (235)
T ss_pred chHHHH--HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH---------HH
Confidence 111111 11111111 12378999999999987653 443333322211110 00000 01
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLS-SP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
....+...+.+.|++++|...++...+... .| ....+..+..++.+.|++++|...++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 122566778899999999999999877632 12 3568889999999999999999999888765
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.24 E-value=0.0011 Score=70.96 Aligned_cols=198 Identities=13% Similarity=0.045 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH---HHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNI---YVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNIL 330 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~---~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 330 (572)
..|-..|....+.++.++|.+++++.... ++.-.. ..|.++++. ..|.-+...++|+++.+.. -....|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 34555555555555566666555555433 222222 223333332 1144445555555555421 012234555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc---hhhHHHHHHH
Q 008265 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN---TITWSSLINA 407 (572)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~ 407 (572)
...|.+.+..++|.++++.|.+. +.-....|...+..+.++++-++|.+++.+..+. -|. .......++.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-----F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-----FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-----hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 55555555556666666555542 1223445555555555555555555555555443 222 1222333333
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 408 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
-.+.|+.+.+..+|+.....- +--...|+..++.=.+.|+.+.++.+|++....++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 345555555555555555431 22344555555555555555555555555554443
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=0.00014 Score=70.61 Aligned_cols=248 Identities=13% Similarity=0.038 Sum_probs=166.2
Q ss_pred HHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 008265 198 VQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (572)
Q Consensus 198 l~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 273 (572)
..-+.+.|+..+|.-.|+.. |.+...|.-|.......++-..|+..+.+..+... -+....-.|.-.|...|.-.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHH
Confidence 33444556666665555542 33336677777777777777778877777776432 24566677777788888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHH--H-------HHhc--CChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCChH
Q 008265 274 KSRAIYEDLRSQNVTLNIYVFNSL--M-------NVNA--HDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTV 341 (572)
Q Consensus 274 ~a~~~~~~m~~~g~~p~~~~~~~l--l-------~~~~--~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~ 341 (572)
.|+..|+.-+.... . ..|... . .... .......++|-++.. .+..+|......|--.|.-.|+++
T Consensus 371 ~Al~~L~~Wi~~~p--~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 371 QALKMLDKWIRNKP--K-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHhCc--c-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 88888877754421 0 000000 0 0011 124555666666644 454567777888888888889999
Q ss_pred HHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHH
Q 008265 342 LAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMH 419 (572)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~ 419 (572)
.|...|+.... ++|+ ..+||-|...++...+.++|+..|++..+. .|+- ....-|.-+|...|.+++|.+
T Consensus 448 raiDcf~~AL~------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 448 RAVDCFEAALQ------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHHHHHh------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 99999999887 4555 458999999999999999999999999886 5554 233446667788899999988
Q ss_pred HHHHHHH---c------CCCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 008265 420 LFEEMLQ---A------GCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (572)
Q Consensus 420 ~~~~m~~---~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (572)
.|-..+. . +..++...|..|=.++.-.++.|.+.+...
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 8877543 1 123345778888778888888887766654
No 109
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=4.2e-06 Score=49.95 Aligned_cols=33 Identities=48% Similarity=0.855 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 432 (572)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 110
>PLN02789 farnesyltranstransferase
Probab=98.16 E-value=0.0038 Score=58.97 Aligned_cols=229 Identities=12% Similarity=0.023 Sum_probs=153.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHH--HH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNS--LM 298 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~--ll 298 (572)
.++..+-..+...+..++|+.+.+.+.+.... +..+|+.--.++...| ++++++..++++.+...+ +...|+- .+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 45555666677778889999999988875321 3345665555666667 578999999998876432 2223432 22
Q ss_pred HHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 008265 299 NVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (572)
Q Consensus 299 ~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 376 (572)
....+. .++++..++++.+...+ +..+|+...-++.+.|+++++++.++++.+.. ..|...|+.....+.+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-----~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-----VRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-----CCchhHHHHHHHHHHhc
Confidence 222233 36778888888876654 78888888888888999999999999998742 34566777666555544
Q ss_pred ---cc----HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008265 377 ---KW----WQMALKVKEDMLSAGVTPNTITWSSLINACANA----GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (572)
Q Consensus 377 ---g~----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 445 (572)
|. .++.++...++..... -|...|+.+...+... ++..+|.+.+.+..+.+ ..+......|++.|+.
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 2466777766666533 2667888888888773 34466888888876643 3466778888888876
Q ss_pred hC------------------CHhHHHHHHHHhh
Q 008265 446 AC------------------QFDRAFRLFRSWT 460 (572)
Q Consensus 446 ~g------------------~~~~A~~~~~~m~ 460 (572)
.. ..++|.+++..+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 268 GLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 32 2366777777764
No 111
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.15 E-value=0.0018 Score=67.13 Aligned_cols=375 Identities=10% Similarity=-0.025 Sum_probs=198.2
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (572)
+++.++.+|.- ...|..|-..|+..-+...|...|+...+.. +. ...........|+...++++|..+.-.
T Consensus 481 li~alrld~~~-apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--at------daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 481 LIRALRLDVSL-APAFAFLGQIYRDSDDMKRAKKCFDKAFELD--AT------DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ch------hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 66777777776 7788888888888778888888888877653 32 133344556778899999999888433
Q ss_pred hhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC-
Q 008265 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (572)
Q Consensus 139 m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~- 217 (572)
.-+. .|-. ....+. ......+.+.++...|+.-|+..++ +.|.+...|..++.+|.+.|++..|++.|.+.
T Consensus 552 ~~qk--a~a~---~~k~nW-~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 552 AAQK--APAF---ACKENW-VQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred Hhhh--chHH---HHHhhh-hhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 2222 1110 011111 1111123457888888888887775 57888899999999999999999999999764
Q ss_pred -CCchhHHHH--HHHHHHhcCCHHHHHHHHHHHHhc------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----
Q 008265 218 -PRADILFCN--FVREFGKKRDLVSALRAYDASKKH------LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS---- 284 (572)
Q Consensus 218 -~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---- 284 (572)
......|.. ..-.-+..|.+++|.+.+..+... +..--..++-.+...+.-.|-..++.+++++-++
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 222233333 233445678999999888876432 1111223344444444444544555555544432
Q ss_pred ---CCCCCCHHHHHHHHHHhc----CChH----HHHHHH-HHHHHcCCC--------------------CCHHHHHHHHH
Q 008265 285 ---QNVTLNIYVFNSLMNVNA----HDLK----FTLEVY-KNMQKLGVM--------------------ADMASYNILLK 332 (572)
Q Consensus 285 ---~g~~p~~~~~~~ll~~~~----~~~~----~a~~~~-~~m~~~~~~--------------------~~~~~~~~ll~ 332 (572)
....-+...|-.+-.++. -.++ ....++ .+....+.- .+..+|..+..
T Consensus 704 ~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGI 783 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhH
Confidence 111112222222211110 0000 001111 111111111 12223333333
Q ss_pred HHHH----c----CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 333 ACCL----A----GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 333 ~~~~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
.|.+ . .+...|...+.+..+++ ..+..+|+.|--. ...|++.-+..-|-+-.... +....+|..+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~-----ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~Nl 856 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLC-----ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNL 856 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHh-----hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheecc
Confidence 3333 0 11123444444444431 2233344444332 34445555544444433331 1244555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
--.|.+..+++.|...|...+... +.|...|.-........|+.-++..+|..
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 555666677778888777776542 23444554444444566777777777765
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.14 E-value=0.00071 Score=61.69 Aligned_cols=182 Identities=12% Similarity=-0.024 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCH--HH
Q 008265 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI----YVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADM--AS 326 (572)
Q Consensus 255 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~--~~ 326 (572)
....+-.+...+.+.|++++|...|+++.... |+. ..+..+-.+ ..+++++|...++++.+....... .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44566666677778888888888888776652 321 122222222 236777777777777664332111 23
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc
Q 008265 327 YNILLKACCLA--------GNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (572)
Q Consensus 327 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 397 (572)
+..+..++.+. |+.++|.+.|+.+.. ..|+. ..+.++..... .... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~~a~~~~~~----~~~~------~~------- 166 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR------RYPNSEYAPDAKKRMDY----LRNR------LA------- 166 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH------HCCCChhHHHHHHHHHH----HHHH------HH-------
Confidence 44444555554 567777777777765 23443 22222211100 0000 00
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.....+...|.+.|++++|...++...+..- +.....+..+..++.+.|++++|..+++.+...
T Consensus 167 -~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 -GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112455668888999999999999886521 223567888999999999999999998887643
No 113
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.13 E-value=0.0015 Score=65.33 Aligned_cols=219 Identities=13% Similarity=0.125 Sum_probs=115.7
Q ss_pred HHHHhcCCChHHHHHhhhcCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 008265 198 VQLCVNKPDVNLAIRYACIVPRAD---ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (572)
Q Consensus 198 l~~~~~~g~~~~a~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 274 (572)
+.+......+.+|+.+++.++... .-|..+...|+..|+++.|+++|-+. ..++-.|.+|.+.|+|+.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 445555666666666666554432 33555666777777777777776442 234555667777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 275 SRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
|.++-++.... ......|-+-..- ..|++.+|.++|-.+.. |+. .|.+|-+.|..++.+++.+.--
T Consensus 810 a~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h- 877 (1636)
T KOG3616|consen 810 AFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHH- 877 (1636)
T ss_pred HHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhC-
Confidence 77666554321 1122222221111 12455555555533321 332 4566777777766666655431
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008265 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (572)
Q Consensus 353 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 432 (572)
| ..-..|...+..-|-..|++..|.+-|-+..+ |.+-+..|...+.|++|.++-+. .| ..|
T Consensus 878 ----~--d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---eg-g~n 938 (1636)
T KOG3616|consen 878 ----G--DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EG-GAN 938 (1636)
T ss_pred ----h--hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cc-ccc
Confidence 1 11122445556666677777777776655432 55566677777777777655432 22 223
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 433 SQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
..-....+ +++.=--+.|.+++++
T Consensus 939 ~~k~v~fl--waksiggdaavkllnk 962 (1636)
T KOG3616|consen 939 AEKHVAFL--WAKSIGGDAAVKLLNK 962 (1636)
T ss_pred HHHHHHHH--HHHhhCcHHHHHHHHh
Confidence 33333333 3333334566777664
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.00097 Score=58.52 Aligned_cols=116 Identities=13% Similarity=0.038 Sum_probs=73.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
|++..|...+++..... ++|..+|+.+.-+|.+.|++++|..-|.+..++. .-+...+|.+.-.+.-.|+.+.|
T Consensus 114 g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-----~~~p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 114 GNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-----PNEPSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred cchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-----cCCchhhhhHHHHHHHcCCHHHH
Confidence 33444444444433322 3467777777777777777777777777777641 23445666777777777777777
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
..++......+.. |...-..+.......|++++|..+...-.
T Consensus 188 ~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 188 ETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 7777777766433 44555556666677777777777655543
No 115
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=5.8e-06 Score=49.34 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008265 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290 (572)
Q Consensus 258 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 290 (572)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 116
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.09 E-value=6.4e-06 Score=48.76 Aligned_cols=33 Identities=15% Similarity=0.407 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 289 (572)
.+|+.+|++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 117
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0089 Score=62.22 Aligned_cols=318 Identities=11% Similarity=0.062 Sum_probs=214.9
Q ss_pred hHHHHHHHhHhhcCChhHHH-----------HHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhh
Q 008265 72 DYYADMASKLAKDGRLEEFA-----------MIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~-----------~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~ 140 (572)
..|-...+-+.++.+.+-=. .+.++..+.++.-. -+.+-.+..+.++...+-..+-+++++++.
T Consensus 937 SlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~-----~dPe~vS~tVkAfMtadLp~eLIELLEKIv 1011 (1666)
T KOG0985|consen 937 SLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPET-----QDPEEVSVTVKAFMTADLPNELIELLEKIV 1011 (1666)
T ss_pred hHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCcc-----CChHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 45556666666665543222 33344444433110 012334445677778888888888888875
Q ss_pred hcCCCCcchhhhhhhH-HHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC
Q 008265 141 ELGVAPLELFDGSGFK-LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (572)
Q Consensus 141 ~~~~~p~~~~~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 219 (572)
-. |+.+..+..+. .++-... .-+-..+.+..+++-..+ . ..+...+..++-+++|..+|+....
T Consensus 1012 L~---~S~Fse~~nLQnLLiLtAi----kad~trVm~YI~rLdnyD--a------~~ia~iai~~~LyEEAF~ifkkf~~ 1076 (1666)
T KOG0985|consen 1012 LD---NSVFSENRNLQNLLILTAI----KADRTRVMEYINRLDNYD--A------PDIAEIAIENQLYEEAFAIFKKFDM 1076 (1666)
T ss_pred cC---CcccccchhhhhhHHHHHh----hcChHHHHHHHHHhccCC--c------hhHHHHHhhhhHHHHHHHHHHHhcc
Confidence 53 44443333322 2222111 235556666666664322 1 1356777788899999999998877
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008265 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (572)
Q Consensus 220 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 299 (572)
+....+.||.- -+.++.|.+.-++.. ....|..+..+-.+.|.+.+|.+-|-+.. |+..|..++.
T Consensus 1077 n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~ 1141 (1666)
T KOG0985|consen 1077 NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVID 1141 (1666)
T ss_pred cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHH
Confidence 76666666653 367777777766643 34689999999999999999988775543 6677888888
Q ss_pred Hh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccc
Q 008265 300 VN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377 (572)
Q Consensus 300 ~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 377 (572)
.. +|.+++-...+....+..-.|.. =+.+|-+|++.++..+.+++. .-||......+.+-|...|
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-----------~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-----------AGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-----------cCCCchhHHHHhHHHhhhh
Confidence 64 48899988888776665555544 456888999999988766654 3588888888899999999
Q ss_pred cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHH
Q 008265 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (572)
Q Consensus 378 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 452 (572)
.++.|.-++... .-|..|...+...|++..|.+.-++.. +..||..+-.+|...+.+..|
T Consensus 1209 ~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1209 MYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred hhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH
Confidence 999998877654 348888888999999988887655543 567888888888776665544
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.0021 Score=55.99 Aligned_cols=149 Identities=13% Similarity=0.046 Sum_probs=90.5
Q ss_pred cCChhHHHHHHHHHHhh---c-CChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHH
Q 008265 84 DGRLEEFAMIVESVVVS---E-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (572)
Q Consensus 84 ~g~~~~A~~~~~~m~~~---~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~ 159 (572)
..+.++.++++.++... | ..++. +..+..++.+....|+.+.|...++.+... .|....-..+..+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~------w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~l 96 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEI------WTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLL 96 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchH------HHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHH
Confidence 35778899999888743 3 33443 556777888888999999999999998877 365443333444443
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHH----hhhcCCCchhHHHHHHHHHHhcC
Q 008265 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR----YACIVPRADILFCNFVREFGKKR 235 (572)
Q Consensus 160 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~----~~~~~~~~~~~~~~li~~~~~~g 235 (572)
. -.|++++|+++++.+++.+ |.+.+.+..-+.+....|...+|++ +++.++.+...|.-+-..|...|
T Consensus 97 E------a~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 97 E------ATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred H------HhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 3 2689999999999998765 5555555444444444444444433 22333444444444444444444
Q ss_pred CHHHHHHHHHHHH
Q 008265 236 DLVSALRAYDASK 248 (572)
Q Consensus 236 ~~~~a~~~~~~m~ 248 (572)
++++|.-.++++.
T Consensus 169 ~f~kA~fClEE~l 181 (289)
T KOG3060|consen 169 DFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 119
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.09 E-value=6.8e-06 Score=48.64 Aligned_cols=32 Identities=44% Similarity=0.847 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 431 (572)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555544444
No 120
>PLN02789 farnesyltranstransferase
Probab=98.06 E-value=0.0062 Score=57.57 Aligned_cols=193 Identities=11% Similarity=0.070 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY-VFNS---LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333 (572)
Q Consensus 258 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~---ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 333 (572)
++..+-..+...++.++|+.++.++++. .|+.. .|+. ++.....++++++..++++.+.+.+ +..+|+.--..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 3444444555667889999999998876 34433 2221 2222223679999999999887654 55567665555
Q ss_pred HHHcCCh--HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc
Q 008265 334 CCLAGNT--VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (572)
Q Consensus 334 ~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 411 (572)
+.+.|+. +++..+++.+.+.. +-|..+|+.....+...|+++++++.++++.+.+.. |...|+.....+.+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-----pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-----AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 6666653 66788888887632 446778999888899999999999999999988655 667787776666554
Q ss_pred ---CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----CCHhHHHHHHHHhh
Q 008265 412 ---GLV----EQAMHLFEEMLQAGCEPNSQCCNILLQACVEA----CQFDRAFRLFRSWT 460 (572)
Q Consensus 412 ---g~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~ 460 (572)
|.. ++..++..++.... +-|...|+.+...+... ++..+|.+++.+..
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 222 45667776666653 44667787777777662 33455777766644
No 121
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.014 Score=56.70 Aligned_cols=289 Identities=12% Similarity=0.076 Sum_probs=170.6
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhh----hcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 008265 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA----CIVPRADILFCNFVREFGKKRDLVSALR 242 (572)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~ 242 (572)
..|+++.|+.+|-+... +.|.+.+.|..-..+|+..|++++|++-- +.-|.-..-|+....++.-.|++++|..
T Consensus 14 s~~d~~~ai~~~t~ai~--l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIM--LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHc--cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 47999999999988764 56778899999999999999999887643 3335556789999999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCH------------------------HHH-HHHHHHHHhC----CCCC-CHH
Q 008265 243 AYDASKKHLSSPNMYICRTIIDVCGICGDY------------------------MKS-RAIYEDLRSQ----NVTL-NIY 292 (572)
Q Consensus 243 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~------------------------~~a-~~~~~~m~~~----g~~p-~~~ 292 (572)
-|.+-++.. +-+...++-+..++...... +.+ ..+++.+.+. +... |..
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 999877753 22444555555554111000 000 0000000000 0000 000
Q ss_pred HHHH-------------------------------------------------------HHHH-hc-CChHHHHHHHHHH
Q 008265 293 VFNS-------------------------------------------------------LMNV-NA-HDLKFTLEVYKNM 315 (572)
Q Consensus 293 ~~~~-------------------------------------------------------ll~~-~~-~~~~~a~~~~~~m 315 (572)
...+ +.++ +. .+++.+.+-+...
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 0000 0000 00 1344444444444
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccccHHHHHHHHHHHHHCC
Q 008265 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (572)
Q Consensus 316 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (572)
.+.. -+..-++..-.+|...|...++...-+...+.+.......+ ...+..+..+|.+.++++.++..|.+.....
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 4432 24444555666777777777766666555442211100000 0112223335666778888888888876654
Q ss_pred CCCchhhH-------------------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 008265 394 VTPNTITW-------------------------SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (572)
Q Consensus 394 ~~p~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 448 (572)
..||..+= -.-...+.+.|++..|+..+.++++.. +-|...|.....+|.+.|.
T Consensus 329 Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~ 407 (539)
T KOG0548|consen 329 RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGE 407 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhh
Confidence 44444321 111334567788999999999988875 5567788888888999999
Q ss_pred HhHHHHHHHHhhh
Q 008265 449 FDRAFRLFRSWTL 461 (572)
Q Consensus 449 ~~~A~~~~~~m~~ 461 (572)
+..|.+=.+...+
T Consensus 408 ~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 408 YPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHHHHHHh
Confidence 8888876555443
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.00056 Score=60.00 Aligned_cols=148 Identities=14% Similarity=0.013 Sum_probs=119.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
|+-+....+....... ...|.......+....+.|++.+|...|.+.... -++|...|+.+.-+|.+.|+.+.|
T Consensus 80 G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----~p~d~~~~~~lgaaldq~Gr~~~A 153 (257)
T COG5010 80 GDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----APTDWEAWNLLGAALDQLGRFDEA 153 (257)
T ss_pred ccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----CCCChhhhhHHHHHHHHccChhHH
Confidence 5555555555554332 2336666777889999999999999999999864 378899999999999999999999
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
..-|.+..+.... +...+|.|.-.|.-.|+.+.|..++......+ .-|..+-..+..+....|++++|..+...
T Consensus 154 r~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 154 RRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999999887433 44667777778888899999999999998775 44777788888899999999999998754
No 123
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00056 Score=66.52 Aligned_cols=247 Identities=10% Similarity=0.021 Sum_probs=181.2
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHH
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 239 (572)
.+.+.|++.+|.-.|+...+. .|.....|-.|...-..+++-..|+..+.+- |.+-...-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 445688999999999987765 5788899999999999999988887776653 5555888889999999999999
Q ss_pred HHHHHHHHHhcCCC--------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCC--CCCCHHHHHHHHHHhcCChHHH
Q 008265 240 ALRAYDASKKHLSS--------PNMYICRTIIDVCGICGDYMKSRAIYEDLR-SQN--VTLNIYVFNSLMNVNAHDLKFT 308 (572)
Q Consensus 240 a~~~~~~m~~~~~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-~~g--~~p~~~~~~~ll~~~~~~~~~a 308 (572)
|+.+++.=.+..++ ++...-+. ..+.....+.+..++|-++. ..+ +.||+.+--.+|.-..+++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99998765432210 01000000 22233344556666666654 445 6677776666777777999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccccHHHHHHHHH
Q 008265 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKE 387 (572)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~ 387 (572)
.+.|+........ |..+||-|...++...+.++|+..|.+..+ ++|+- .+...|.-+|...|.+++|.+.|-
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq------LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ------LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh------cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 9999999886443 678899999999999999999999999998 56774 466677778999999999988877
Q ss_pred HHHHC---------CCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 008265 388 DMLSA---------GVTPNTITWSSLINACANAGLVEQAMHLF 421 (572)
Q Consensus 388 ~m~~~---------g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (572)
..... +..++...|.+|=.++...++.|-+.+..
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 65432 11224467888888888888877555443
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.02 E-value=0.00032 Score=58.02 Aligned_cols=92 Identities=8% Similarity=-0.152 Sum_probs=51.8
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 008265 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 447 (572)
.+...+...|++++|...|+........ +...|..+..++.+.|++++|...|+...+.. +.+...+..+..++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3445555566666666666665554221 44555555556666666666666666665543 334555555555666666
Q ss_pred CHhHHHHHHHHhhh
Q 008265 448 QFDRAFRLFRSWTL 461 (572)
Q Consensus 448 ~~~~A~~~~~~m~~ 461 (572)
+.++|...|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655443
No 125
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.01 E-value=0.0066 Score=55.35 Aligned_cols=293 Identities=12% Similarity=0.063 Sum_probs=151.6
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (572)
+-.++..+|+. -.++-.-...|...|+-..|+.=|...++. .|+-.. +...-...+.+.|.+++|..=|+.
T Consensus 61 yHaAve~dp~~-Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~------ARiQRg~vllK~Gele~A~~DF~~ 131 (504)
T KOG0624|consen 61 YHAAVEGDPNN-YQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMA------ARIQRGVVLLKQGELEQAEADFDQ 131 (504)
T ss_pred HHHHHcCCchh-HHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHH------HHHHhchhhhhcccHHHHHHHHHH
Confidence 44556666665 444444556677788888888888888876 444222 222233457799999999999999
Q ss_pred hhhcCCCCcchhhhhhhHHHH---------HHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHH
Q 008265 139 LNELGVAPLELFDGSGFKLLK---------NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL 209 (572)
Q Consensus 139 m~~~~~~p~~~~~~~~~~~l~---------~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 209 (572)
+.+. .|+.-+......-+. .......-.|+...|+.....+++ +.|.+...+..-...|...|.+..
T Consensus 132 vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~ 207 (504)
T KOG0624|consen 132 VLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKK 207 (504)
T ss_pred HHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHH
Confidence 9887 343211111111110 001111123555555555555554 234444444444444555555554
Q ss_pred HHHhhhcC---CC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 210 AIRYACIV---PR-ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 210 a~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
|+.-++.. .. +...+--+-..+...|+.+.++..+.+-.+ +.||...+ |.-...+.+..+.++.|.+.
T Consensus 208 AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~C------f~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 208 AIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLC------FPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhH------HHHHHHHHHHHHHHHHHHHH
Confidence 44333221 11 112233333344444444444444444433 22332211 00111112222222222211
Q ss_pred CCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC
Q 008265 286 NVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMA---SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362 (572)
Q Consensus 286 g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 362 (572)
.-.++|.++++..+...+....-... .+..+-.++...|++.+|++...++.+ +.||
T Consensus 280 --------------ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~------~d~~ 339 (504)
T KOG0624|consen 280 --------------IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD------IDPD 339 (504)
T ss_pred --------------HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh------cCch
Confidence 01134566666666665543321222 234455666777888888888888876 3444
Q ss_pred -HHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 363 -VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 363 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+.++.--..+|.-...+|.|+.-|+...+.
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 667777778888888888888888887765
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.99 E-value=0.00049 Score=56.89 Aligned_cols=108 Identities=9% Similarity=-0.031 Sum_probs=83.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHH
Q 008265 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (572)
Q Consensus 310 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 389 (572)
.++++..+. .|+ .+......+...|++++|...|+..... -+.+...|..+..++.+.|++++|...|+..
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA-----QPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345555442 233 3445677788899999999999988863 1446678888888999999999999999999
Q ss_pred HHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 390 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+... .+...+..+..++...|+.++|...|+...+.
T Consensus 85 l~l~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 85 LMLDA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 87643 36678888888999999999999999998876
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.98 E-value=0.0023 Score=67.71 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=65.6
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (572)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 246 (572)
+.+++++|..+.+...+. .|.....|..+...+.+.++...+..+ .++.......++.-+..+...
T Consensus 43 ~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 43 SENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------NLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred hcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------hhhhhcccccchhHHHHHHHH
Confidence 456666666666654432 344444444444445555554433221 334444444444444444444
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 008265 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQK 317 (572)
Q Consensus 247 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~a~~~~~~m~~ 317 (572)
|.+.+ -+...+-.+..+|-+.|+.++|.++++++.+.. +-|....|.+-..++ .++++|++++.+...
T Consensus 109 i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~ 177 (906)
T PRK14720 109 ILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEEDKEKAITYLKKAIY 177 (906)
T ss_pred HHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44422 223355556666666666666666666666554 223444444444333 255555555554443
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.98 E-value=0.0014 Score=68.40 Aligned_cols=126 Identities=2% Similarity=-0.117 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhc----CCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 008265 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAY 244 (572)
Q Consensus 169 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~ 244 (572)
|++++|..+++...+. .|+.......+..++.+.+++++|+...++ -|.+......+..++.+.|++++|..+|
T Consensus 100 g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y 177 (694)
T PRK15179 100 HRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACF 177 (694)
T ss_pred CCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4444444444444332 333333344444444444444444333222 2344466777777888888888888888
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 245 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
++....+. -+..++..+-.++-+.|+.++|...|+...+.- .+....|+..+
T Consensus 178 ~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 178 ERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 88877332 246677777778888888888888888876552 23445554444
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.91 E-value=0.00094 Score=54.73 Aligned_cols=106 Identities=8% Similarity=-0.009 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
......+...+...|++++|.+.|+.+... .+.+...+..+...+.+.|++++|...++...+.+. .+...+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~ 90 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFH 90 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHH
Confidence 344556667777888888888888877653 134566777777888888888888888888776642 24566667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (572)
+...|...|+.++|...|+...+. .|+...+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 777888888888888888887765 35444433
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.91 E-value=0.0073 Score=64.06 Aligned_cols=215 Identities=6% Similarity=-0.009 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 300 (572)
..+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+ .+... .+..
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~--------- 96 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQN--------- 96 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccc---------
Confidence 56677777887888888888888766554 2332 2222222256666665555444 22211 1111
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHH
Q 008265 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (572)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (572)
.++..+..+.+.|...+ -+...+..+..+|-+.|+.+++..+|+++.+.. +-|..+.|.+...|... +++
T Consensus 97 --~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 97 --LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred --cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHh-hHH
Confidence 12333344444554432 234467777788888888888888888888742 34566778888888877 888
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHH---H--HcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 008265 381 MALKVKEDMLSAGVTPNTITWSSLINAC---A--NAGLVEQAMHLFEEMLQA-GCEPNSQCCNILLQACVEACQFDRAFR 454 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~---~--~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (572)
+|++++.+....-+ +..-|+.+...+ + ...+++.-..+.+.+... |..--..++--+...|-..++|+++..
T Consensus 167 KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 167 KAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 88888877765411 111222222211 1 112334444444444432 434445666777778888889999999
Q ss_pred HHHHhhhcc
Q 008265 455 LFRSWTLSK 463 (572)
Q Consensus 455 ~~~~m~~~~ 463 (572)
+|+.+.+..
T Consensus 245 iLK~iL~~~ 253 (906)
T PRK14720 245 ILKKILEHD 253 (906)
T ss_pred HHHHHHhcC
Confidence 999887643
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.91 E-value=0.0058 Score=58.64 Aligned_cols=110 Identities=13% Similarity=0.053 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccccHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 381 (572)
+++++|+..++.+.+.-. -|...+....+.+.+.++.++|.+.++.+.. ..|+ ...+-.+..+|.+.|++.+
T Consensus 320 ~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~------l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 320 GQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALA------LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred cccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCCccHHHHHHHHHHHhcCChHH
Confidence 555555555555554322 2344444445555556666666666655554 2344 3344445555555666666
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 420 (572)
|..+++....... -|...|..|.++|...|+..++..-
T Consensus 393 ai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 393 AIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHH
Confidence 6655555554422 2455566666666655555554443
No 132
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.90 E-value=0.00059 Score=59.77 Aligned_cols=120 Identities=10% Similarity=0.068 Sum_probs=99.3
Q ss_pred cCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHH-HHcCC--
Q 008265 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC-ANAGL-- 413 (572)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~-- 413 (572)
.++.+++...++...+. -+.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~-----~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-----NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHM 125 (198)
T ss_pred chhHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCC
Confidence 56667777777777663 2567889999999999999999999999999987543 667777777764 67777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.++|.+++++..+.+ +-+...+..+..++.+.|++++|...|+++.+..
T Consensus 126 ~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 126 TPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred cHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 599999999999875 4467888888899999999999999999998754
No 133
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.90 E-value=0.00019 Score=69.28 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=105.0
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc
Q 008265 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (572)
Q Consensus 318 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 397 (572)
.+.+.+......+++.+....+.+++..++-..........+. ..|..++|+.|.+.|..+.++.+++.=...|+-||
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~--~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLL--PSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccccccc--CccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 3455677888888998888888999999888887632122122 23556999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 008265 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (572)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 446 (572)
..++|.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999998877777888888777777766
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.86 E-value=0.0013 Score=63.35 Aligned_cols=122 Identities=15% Similarity=0.138 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008265 260 RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (572)
Q Consensus 260 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 339 (572)
..++..+...++++.|.++|+++.+.. |+....-+-+....++-.+|.+++++..+.... +......-...|.+.++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 444555555566777777777766652 443322111111223444555555555543221 34444444455555666
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 340 TVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.+.|..+.+++.+ ..|+.. +|..|..+|.+.|+++.|+..++.+.
T Consensus 250 ~~lAL~iAk~av~------lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVE------LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHH------hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666555 233333 56666666666666666665555543
No 135
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.86 E-value=0.043 Score=55.77 Aligned_cols=185 Identities=9% Similarity=-0.017 Sum_probs=124.9
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC-CCc-----hhHHHHHHHHHH-hcCCHH
Q 008265 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-PRA-----DILFCNFVREFG-KKRDLV 238 (572)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~-----~~~~~~li~~~~-~~g~~~ 238 (572)
..+|++..+.+.|++....-+ .....|..+...|...|.-..|..+++.- +.. ...+-..-..|. +.|.++
T Consensus 334 ~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~e 411 (799)
T KOG4162|consen 334 SRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhh
Confidence 347999999999988765332 34467888888888888888888887653 221 122222223333 346667
Q ss_pred HHHHHHHHHHhc--CC--CCcHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhc
Q 008265 239 SALRAYDASKKH--LS--SPNMYICRTIIDVCGICG-----------DYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNVNA 302 (572)
Q Consensus 239 ~a~~~~~~m~~~--~~--~~~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~ 302 (572)
+++++-.+.... +. ......|-.+--+|...- ...++++.+++..+. +-.|+..-|-++-.+..
T Consensus 412 egldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~ 491 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQ 491 (799)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 776666655441 11 122334444444443321 245677888887665 44567777777777888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
++.+.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...+
T Consensus 492 R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 492 RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 99999999999998876666888898888888899999999999887765
No 136
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.86 E-value=0.00026 Score=53.30 Aligned_cols=73 Identities=22% Similarity=0.392 Sum_probs=38.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcC----------ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008265 263 IDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFNSLMNVNAH----------DLKFTLEVYKNMQKLGVMADMASYNILL 331 (572)
Q Consensus 263 l~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~----------~~~~a~~~~~~m~~~~~~~~~~~~~~ll 331 (572)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+. +.-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 5555555555554331 1223455556666666666666666666
Q ss_pred HHHH
Q 008265 332 KACC 335 (572)
Q Consensus 332 ~~~~ 335 (572)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5544
No 137
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.86 E-value=0.00037 Score=52.51 Aligned_cols=79 Identities=11% Similarity=0.295 Sum_probs=60.6
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCCC-CCchhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAGV-TPNTITWSSLINACANAG--------LVEQAMHLFEEMLQAGCEPNSQCCN 437 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (572)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+++.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4445566666888888888888888888 788888888888777653 2446778888888888888888888
Q ss_pred HHHHHHHH
Q 008265 438 ILLQACVE 445 (572)
Q Consensus 438 ~li~~~~~ 445 (572)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887654
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.85 E-value=0.00097 Score=64.29 Aligned_cols=128 Identities=13% Similarity=0.102 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
+......++..+...++++.|..+|+++.+ ..|+. ...++..+...++-.+|.+++++..+.. +-+...+.
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~------~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~ 238 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRE------RDPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLN 238 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHh------cCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 345566777888888999999999999986 34654 4457788888888999999999988653 22566677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
.-...|.+.++.+.|+++.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 67777889999999999999999873 3355699999999999999999999998775
No 139
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.039 Score=53.73 Aligned_cols=358 Identities=9% Similarity=-0.024 Sum_probs=187.3
Q ss_pred HhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHH
Q 008265 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (572)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l 158 (572)
.+....|++++|+.+|-+.+...+. + --.|++-..+|...|++++|+.=-.+-.+ +.|+ |...|.-.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-n-------hvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~---w~kgy~r~ 76 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-N-------HVLYSNRSAAYASLGSYEKALKDATKTRR--LNPD---WAKGYSRK 76 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-c-------cchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCc---hhhHHHHh
Confidence 4566789999999999988876433 2 12255566678889999888765555444 3564 44455544
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhh------cCCCc--------hhHH
Q 008265 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC------IVPRA--------DILF 224 (572)
Q Consensus 159 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~------~~~~~--------~~~~ 224 (572)
-.+..+ .|++++|+.-|.+=++. .|++...++.+.+++...... -+.|. .+..+ ...|
T Consensus 77 Gaa~~~---lg~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~---~~~~~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 77 GAALFG---LGDYEEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAA---DQLFTKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred HHHHHh---cccHHHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHh---hhhccCcHHHHHhhcChhhhhhhccHHH
Confidence 444444 58999999999886653 456656666666665211000 11110 00000 0112
Q ss_pred HHHHHHHHhc----------CCHHHHHHHHHHH-----HhcC-------CCC----------------------cHHHHH
Q 008265 225 CNFVREFGKK----------RDLVSALRAYDAS-----KKHL-------SSP----------------------NMYICR 260 (572)
Q Consensus 225 ~~li~~~~~~----------g~~~~a~~~~~~m-----~~~~-------~~~----------------------~~~~~~ 260 (572)
..++..+-+. ..+..+.-++... ...| ..| -..-..
T Consensus 149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 2222111110 0011111111000 0000 001 112345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hc---------CChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008265 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NA---------HDLKFTLEVYKNMQKLGVMADMASYNIL 330 (572)
Q Consensus 261 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~l 330 (572)
.+.++..+..+++.|.+-+....... ...+|...+.+ +. +..+.|.+.-.++... .+.=...+..+
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad-~klIak~~~r~ 304 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRAD-YKLIAKALARL 304 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHH-HHHHHHHHHHh
Confidence 56666667777777777777766552 33333333332 22 2222222222222210 00000111223
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhC--------------------CCCCCHH-HHHHHHHHHHccccHHHHHHHHHHH
Q 008265 331 LKACCLAGNTVLAQEIYGEVKHLEAKG--------------------VLKLDVF-TYSTIVKVFADAKWWQMALKVKEDM 389 (572)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~--------------------~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m 389 (572)
..+|.+.++.+.++..|.+.....+.+ .+.|... -.-.-...+++.|++..|+..+.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 335555666666666666544311000 0112211 0111134567889999999999999
Q ss_pred HHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 390 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+... -|...|....-+|.+.|.+..|+.-.+...+.. ++....|.-=..++.-..+++.|.+.|++-.+.+
T Consensus 385 Ikr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 385 IKRDP-EDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HhcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88863 367889889999999999998888777776652 2233344444445555667888888888776655
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.81 E-value=2.8e-05 Score=44.77 Aligned_cols=27 Identities=33% Similarity=0.630 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 401 WSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
|+.+|++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.81 E-value=0.0011 Score=54.25 Aligned_cols=99 Identities=10% Similarity=0.050 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
+......+...+...|++++|.+.|+.+...+. .+...|..+...+...|++++|..+++...+.+ +.+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 345667777888999999999999999988643 367888889999999999999999999988765 556788888888
Q ss_pred HHHHhCCHhHHHHHHHHhhhc
Q 008265 442 ACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.+...|++++|...|++..+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999987753
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3.4e-05 Score=44.42 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=23.6
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCC
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 394 (572)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 678888888888888888888888877663
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.76 E-value=0.0018 Score=53.76 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch--h
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT--I 399 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~ 399 (572)
..|..++..+ ..++...+...++.+... . +.+ ....-.+...+...|++++|...|+........|+. .
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~---~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKD---Y--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHH---C--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 3455566555 488889998889888862 1 222 234444567788999999999999999987633322 2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
....+...+...|++++|+..++...... .....+....+.+.+.|++++|...|+.
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44557788889999999999997754433 3345667788889999999999999975
No 144
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.75 E-value=0.042 Score=52.28 Aligned_cols=95 Identities=19% Similarity=0.194 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCC-CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC-NILL 440 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li 440 (572)
..+|...|.+--+...++.|..+|-+..+.| +.+++..++++|..++. |+...|..+|+.-... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3567788888888888999999999999998 67888999999998776 6778899999876654 4555444 4556
Q ss_pred HHHHHhCCHhHHHHHHHHhh
Q 008265 441 QACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~ 460 (572)
.-+...++-+.|..+|+.-.
T Consensus 474 ~fLi~inde~naraLFetsv 493 (660)
T COG5107 474 LFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhH
Confidence 66778899999999998543
No 145
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.022 Score=50.38 Aligned_cols=47 Identities=9% Similarity=0.021 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
..+|.-+|++|-+. ..|+..+.+....++...|++++|..++++...
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44444444444321 234444455444455555555555555555443
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.67 E-value=0.0011 Score=64.14 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC--CCCCchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 008265 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA--GVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (572)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 423 (572)
++..|.+.-..+ .+.+......+++.+....+++.+..++.+.+.. ....-..|..++|+.|...|..++++++++.
T Consensus 50 ~~~~l~~k~~~~-~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n 128 (429)
T PF10037_consen 50 LYSELDKKFERK-KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKN 128 (429)
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhC
Confidence 444444432222 4667788889999999999999999999999876 2222345667999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 424 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
=...|+-||..+++.||+.+.+.|++..|.++...|...+
T Consensus 129 ~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe 168 (429)
T PF10037_consen 129 RLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQE 168 (429)
T ss_pred hhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998887554
No 147
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.60 E-value=0.014 Score=56.08 Aligned_cols=179 Identities=13% Similarity=0.025 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHhC--CCCCCHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 008265 272 YMKSRAIYEDLRSQ--NVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348 (572)
Q Consensus 272 ~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 348 (572)
+.++...-+.+... .-.|+...+...+.+.. .........+..+... ..-...-|.. ...+...|.+++|+..+.
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~aa~YG~-A~~~~~~~~~d~A~~~l~ 330 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK-RGGLAAQYGR-ALQTYLAGQYDEALKLLQ 330 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC-ccchHHHHHH-HHHHHHhcccchHHHHHH
Confidence 33444444444422 22455666666666533 2222222222222221 1112223333 345667899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+... .+-|...+......+.+.++.++|.+.++.+... .|+ ...+-.+..+|.+.|+..+|..+++.....
T Consensus 331 ~L~~~-----~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 331 PLIAA-----QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred HHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 98863 3556677788888999999999999999999987 666 566777889999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 428 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
. +-|...|..|.++|...|+..+|..-..+..
T Consensus 404 ~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 404 D-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred C-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 4 6688999999999999999999888877654
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.58 E-value=0.13 Score=53.37 Aligned_cols=225 Identities=14% Similarity=0.156 Sum_probs=125.2
Q ss_pred hhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHh
Q 008265 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (572)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 202 (572)
....+++..|+.-..++.+. .||. .+...++++ .+.+.|+.++|..+++.....+ +++
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-----~~a~vLkaL-sl~r~gk~~ea~~~Le~~~~~~--~~D------------ 76 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-----LYAKVLKAL-SLFRLGKGDEALKLLEALYGLK--GTD------------ 76 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-----HHHHHHHHH-HHHHhcCchhHHHHHhhhccCC--CCc------------
Confidence 34667777788777777776 5654 233333333 2356778888887777665332 222
Q ss_pred cCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (572)
Q Consensus 203 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 282 (572)
+.+...+-..|...|+.++|..+|+...+. -|+......+..+|.+-+++.+-.+.--+|
T Consensus 77 ------------------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~L 136 (932)
T KOG2053|consen 77 ------------------DLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQL 136 (932)
T ss_pred ------------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777664 355666666667777777665544443333
Q ss_pred HhCCCCCCHHHHHHHHHHhc----C--------ChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008265 283 RSQNVTLNIYVFNSLMNVNA----H--------DLKFTLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGE 349 (572)
Q Consensus 283 ~~~g~~p~~~~~~~ll~~~~----~--------~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 349 (572)
-+. .+-+.+.|=+++.... + -...|...++.+.+.+ .--+..-.-.-+..+...|++++|..++..
T Consensus 137 yK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 137 YKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAI 215 (932)
T ss_pred HHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 332 2223344444443321 1 1223455555555433 211222223333445566777777777732
Q ss_pred -HHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCC
Q 008265 350 -VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (572)
Q Consensus 350 -~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 394 (572)
..+.. ..-+...-+--+..+...++|.+..++-.++...|.
T Consensus 216 ~la~~l----~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 216 TLAEKL----TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHhc----cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 22210 222333444556667777777777777777777643
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.51 E-value=0.005 Score=48.92 Aligned_cols=101 Identities=11% Similarity=-0.048 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCC--CchhhHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PNTITWSS 403 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ 403 (572)
++..+...+.+.|++++|...|..+...... .......+..+..++.+.|++++|...|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK--STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4556667778888888888888888763100 0111345666788888888888888888888765221 11345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~ 428 (572)
+..++.+.|+.++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7778888888888888888888763
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.059 Score=47.40 Aligned_cols=183 Identities=13% Similarity=0.105 Sum_probs=115.0
Q ss_pred CCHHHHHHHHHHHHhc---C-CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHhcCChH
Q 008265 235 RDLVSALRAYDASKKH---L-SSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN---IYVFNSLMNVNAHDLK 306 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~---~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~ 306 (572)
.+.++..+++..+... | ..++.. .|..++-+...+|+.+.|...++.+..+= |. +.-+..++---.|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4556666666655322 3 344543 45566666777788888888888777652 32 2233333333347778
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHH
Q 008265 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 386 (572)
+|.++++.+.+.+ +-|..++.-=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-----F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-----FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 8888888887765 335666665555666667777777777766654 5678888888888888888888888888
Q ss_pred HHHHHCCCCCch-hhHHHHHHHHHH---cCCHHHHHHHHHHHHHc
Q 008265 387 EDMLSAGVTPNT-ITWSSLINACAN---AGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 387 ~~m~~~g~~p~~-~~~~~li~~~~~---~g~~~~a~~~~~~m~~~ 427 (572)
+++.-. .|.. -.+..+...+-- ..+++.+.++|.+..+.
T Consensus 178 EE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 178 EELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 888765 3433 333333333322 23456677777777765
No 151
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.50 E-value=0.0026 Score=54.54 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHc-----cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc----------------CCHHHHH
Q 008265 360 KLDVFTYSTIVKVFAD-----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA----------------GLVEQAM 418 (572)
Q Consensus 360 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~a~ 418 (572)
..+..+|..++..|.+ .|..+=....+..|.+-|+..|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455566666666653 355565666666667777777777777777665331 2456789
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCC-HhHHHHHHHHhhh
Q 008265 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQ-FDRAFRLFRSWTL 461 (572)
Q Consensus 419 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 461 (572)
+++++|...|+-||..|+..|++.|.+.+. ..+..++.--|.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877665 3444444444443
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.48 E-value=0.008 Score=49.84 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=5.2
Q ss_pred HHHccccHHHHHHH
Q 008265 372 VFADAKWWQMALKV 385 (572)
Q Consensus 372 ~~~~~g~~~~a~~~ 385 (572)
.|.+.|++++|...
T Consensus 127 i~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 127 IYLAQGDYDEARAA 140 (145)
T ss_pred HHHHCCCHHHHHHH
Confidence 33333333333333
No 153
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.45 E-value=0.14 Score=50.21 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC-chhhHHHHHHHHHHcCCHHHHH
Q 008265 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-NTITWSSLINACANAGLVEQAM 418 (572)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 418 (572)
.+....+++++.... ...| ..+|..+|+.--+...+..|..+|.+..+.+..+ ++..++++|..||. ++.+-|.
T Consensus 347 ~~~~~~~~~~ll~~~---~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~Af 421 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIE---DIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAF 421 (656)
T ss_pred hhhhHHHHHHHHhhh---ccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHH
Confidence 444555565555432 1233 3467778888888888899999999998887777 67778888887776 6778888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 419 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
++|+.-.+. +.-+..-....++-+...++-..|..+|++....
T Consensus 422 rIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 422 RIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 988876554 1223334456777788888888899999887654
No 154
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.44 E-value=0.0022 Score=54.98 Aligned_cols=114 Identities=13% Similarity=0.186 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008265 222 ILFCNFVREFGK-----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (572)
Q Consensus 222 ~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 296 (572)
.+|..+++.|.+ .|.++-....+..|.+.|+.-|..+|+.||+.+-+ |.+- ....+.+
T Consensus 48 ~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------------p~n~fQ~ 110 (228)
T PF06239_consen 48 ATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------------PRNFFQA 110 (228)
T ss_pred HHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------------cccHHHH
Confidence 455566666654 47788888888888888998899999998887654 3221 1122223
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHH
Q 008265 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT-VLAQEIYGEVKH 352 (572)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 352 (572)
+..-|-.+-+-|++++++|...|+-||..|+..+++.+.+.+.. .+..++.=.|.+
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 33334456677888888888888888888888888888766653 233333333433
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.43 E-value=0.0032 Score=47.36 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=39.8
Q ss_pred HHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 008265 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (572)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 448 (572)
+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 333444444555555555444433111 22334444444444455555555555544432 2222344444445555555
Q ss_pred HhHHHHHHHHh
Q 008265 449 FDRAFRLFRSW 459 (572)
Q Consensus 449 ~~~A~~~~~~m 459 (572)
++.|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.36 E-value=0.0045 Score=46.49 Aligned_cols=95 Identities=20% Similarity=0.145 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHH
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (572)
+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++...+.... +..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHH
Confidence 455667778889999999999988763 1334467777888888899999999999988876432 4467788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 008265 407 ACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+...|+.++|...+....+.
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHcc
Confidence 889999999999998887654
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.34 E-value=0.00053 Score=50.65 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHH
Q 008265 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417 (572)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 417 (572)
|+++.|+.+++++.+.... .++...+..+..+|.+.|++++|.++++. .+.+.. +....-.+..+|.+.|++++|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~---~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPT---NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCG---THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 4455555555555542100 01222333344555555555555555544 111111 112222334444555555555
Q ss_pred HHHHH
Q 008265 418 MHLFE 422 (572)
Q Consensus 418 ~~~~~ 422 (572)
.+.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55444
No 158
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.34 E-value=0.14 Score=48.45 Aligned_cols=108 Identities=17% Similarity=0.199 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 405 (572)
+.+..|.-+...|+...|.++-.+.+ .|+..-|-..+.+++..++|++..++... +..++-|...+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk--------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv 244 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK--------VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFV 244 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC--------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHH
Confidence 34444555566666666666655543 35666666666666666666665554322 12345566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 008265 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (572)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (572)
.+|.+.|...+|..+...+ + +..-+..|.++|++.+|.+.--
T Consensus 245 ~~~~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666666666655551 1 2334555666666666655543
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.32 E-value=0.0065 Score=56.61 Aligned_cols=130 Identities=12% Similarity=0.102 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (572)
.+|..+|+...+.+..+.|..+|.+.++.+ ...+.+...++|.-++ ++.+.|..+|+...+. +..+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 467888888888888888888888888653 3456667777776664 5666788888888765 344677788888888
Q ss_pred HHcCChHHHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.+.|+.+.+..+|+..... +.++ ...|...+..=.+.|+++.+..+.+.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-----l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-----LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-----SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999888752 2222 247888888888888888888888888765
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.30 E-value=0.0063 Score=48.36 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=78.9
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN----TITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPNSQCCNI 438 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ 438 (572)
++..+...+.+.|++++|.+.|..+.... |+ ...+..+..++.+.|++++|...|+.+....- ......+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 55667778889999999999999998763 33 34566788999999999999999999987521 112456778
Q ss_pred HHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 439 LLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
+..++.+.|+.++|...++++.+..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 88889999999999999999887643
No 161
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.29 E-value=0.3 Score=50.89 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccc
Q 008265 401 WSSLINACANAGLVEQ---AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469 (572)
Q Consensus 401 ~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 469 (572)
.+.|++.|.+.++... |+-+++...... +-|..+--.+|..|+-.|-+..|.++|..+.-..++.+..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTl 509 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTL 509 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccc
Confidence 4678888888888764 333344433332 3455666788999999999999999999988777665543
No 162
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.26 E-value=0.13 Score=54.10 Aligned_cols=163 Identities=12% Similarity=0.027 Sum_probs=121.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (572)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 300 (572)
...|..|...|+..-+...|...|+...+... -+...+....+.|++..+++.|..+.-..-+. -+.....++.+-.+
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhcc
Confidence 37899999999999999999999999877532 35678889999999999999999993222222 12233444444443
Q ss_pred ----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHc
Q 008265 301 ----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFAD 375 (572)
Q Consensus 301 ----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~ 375 (572)
-+++...+..-|+...+..++ |...|..+..+|..+|++..|.++|.+... +.|+.. .---....-+.
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~------LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL------LRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh------cCcHhHHHHHHHHHHHHH
Confidence 236788888889888876554 788999999999999999999999999886 455432 21222234567
Q ss_pred cccHHHHHHHHHHHHHC
Q 008265 376 AKWWQMALKVKEDMLSA 392 (572)
Q Consensus 376 ~g~~~~a~~~~~~m~~~ 392 (572)
.|.+.+|+..+......
T Consensus 643 ~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYA 659 (1238)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 89999999988887643
No 163
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.12 Score=45.60 Aligned_cols=140 Identities=8% Similarity=0.065 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV- 300 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~- 300 (572)
.+.+.++....-.|.+.-...++++..+...+.+......+.+.-.+.|+.+.|...|++..+..-+.|..+++.++.-
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 5677788888888999999999999988877778888889999999999999999999988766444555555554431
Q ss_pred ----h--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008265 301 ----N--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (572)
Q Consensus 301 ----~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (572)
+ ++++-.|...+.++...... |....|.=.-+..-.|+..+|.+..+.+.+ ..|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~------~~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ------QDPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc------cCCccchhhh
Confidence 2 24677777777777654322 344433322233345777888888887776 3455544443
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.0078 Score=56.08 Aligned_cols=130 Identities=10% Similarity=0.113 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
.+|..++...-+.+..+.|..+|.+..+ .+....+++...+++..+ ..++.+.|..+|+...+. +..+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~---~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK---DKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHH
Confidence 3566677777777777777777777764 232233333334443322 245566677777777665 33355667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 405 INACANAGLVEQAMHLFEEMLQAGCEPNS----QCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+..+.+.++.+.|..+|++.... .|.. ..|...++-=.+.|+++.+.++.+++.+
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777654 2333 3677777777777777777777776654
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.21 E-value=0.058 Score=50.50 Aligned_cols=175 Identities=15% Similarity=0.102 Sum_probs=86.5
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
....|......|-..|++++|.+.|...-.......... -....+......+ +..++++|++.+++...
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~--~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~-------- 102 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKF--EAAKAYEEAANCY-KKGDPDEAIECYEKAIE-------- 102 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HH--HHHHHHHHHHHHH-HHTTHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHH-HhhCHHHHHHHHHHHHH--------
Confidence 467788888888888999999888887754322111000 0122222222222 22255555555544322
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcC-CChHHHHHhhhcC-------CCc-
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK-PDVNLAIRYACIV-------PRA- 220 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~-------~~~- 220 (572)
.+.+.|++..|-.++..+ ...|... |+++.|++.|... ...
T Consensus 103 --------------~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~ 152 (282)
T PF14938_consen 103 --------------IYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH 152 (282)
T ss_dssp --------------HHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred --------------HHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh
Confidence 233456666665555443 3444455 5666666655432 100
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 221 --DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-----PNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 221 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
...+..+...+.+.|++++|.++|+++...... .+.. .|-..+-++...|+.-.|.+.|++....
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 134555666677777777777777766543211 1111 1112222445556677777777666543
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.12 E-value=0.1 Score=48.84 Aligned_cols=207 Identities=10% Similarity=0.065 Sum_probs=113.5
Q ss_pred HhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHH
Q 008265 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (572)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (572)
+......|-..|++++|.+.|.+..+.-...+.. ...-..+..+...+ +..++++|+..++
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~--~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~---------------- 98 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK--FEAAKAYEEAANCY-KKGDPDEAIECYE---------------- 98 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHH-HHTTHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHH-HhhCHHHHHHHHH----------------
Confidence 4444455677888888888887765542111110 01112222221111 2235555554444
Q ss_pred HHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhc
Q 008265 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK-RDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGIC 269 (572)
Q Consensus 196 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~ 269 (572)
..+..|...|++..|-+ .+..+...|-.. |++++|.+.|.+..+. |-.- -..++..+...+.+.
T Consensus 99 ~A~~~y~~~G~~~~aA~----------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAK----------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHHCT-HHHHHH----------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCcHHHHHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 34566778888887755 556778888888 8999999999876442 2111 134667778889999
Q ss_pred CCHHHHHHHHHHHHhCCCC-----CCHH--HHHHHHH-HhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHH-
Q 008265 270 GDYMKSRAIYEDLRSQNVT-----LNIY--VFNSLMN-VNAHDLKFTLEVYKNMQKL--GVMAD--MASYNILLKACCL- 336 (572)
Q Consensus 270 g~~~~a~~~~~~m~~~g~~-----p~~~--~~~~ll~-~~~~~~~~a~~~~~~m~~~--~~~~~--~~~~~~ll~~~~~- 336 (572)
|++++|.++|++....-.. .+.. .+..+|. .+.||...|...++..... ++..+ ......||.+|-.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 9999999999998765322 1221 2233333 2447888888888887653 22222 2344556666543
Q ss_pred -cCChHHHHHHHHHHH
Q 008265 337 -AGNTVLAQEIYGEVK 351 (572)
Q Consensus 337 -~g~~~~a~~~~~~~~ 351 (572)
...+.++..-|+.+.
T Consensus 249 D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSIS 264 (282)
T ss_dssp -CCCHHHHCHHHTTSS
T ss_pred CHHHHHHHHHHHcccC
Confidence 223445555554443
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.12 E-value=0.0012 Score=48.74 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=59.8
Q ss_pred cccHHHHHHHHHHHHHCCCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 008265 376 AKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (572)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (572)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|.++++. .+.+ ..+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57899999999999887432 2455566689999999999999999988 3322 1233444556788999999999999
Q ss_pred HHHH
Q 008265 455 LFRS 458 (572)
Q Consensus 455 ~~~~ 458 (572)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.11 E-value=0.17 Score=45.94 Aligned_cols=186 Identities=8% Similarity=-0.019 Sum_probs=107.1
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhh
Q 008265 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (572)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 152 (572)
.+-.....+...|++++|++.|+.+....+... ....+...+..++.+.+++++|+..+++..+. .|+.. .
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-----~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~--~ 104 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHP--N 104 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCC--c
Confidence 333455566779999999999999998755432 22444556778899999999999999999887 44332 1
Q ss_pred hhhHHHHHHHHHH-----------------hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhh
Q 008265 153 SGFKLLKNECQRL-----------------LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (572)
Q Consensus 153 ~~~~~l~~~~~~~-----------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 215 (572)
.-+..++.+.+.+ .+......|+..|+.+.+.- |+ ..-..+|.....
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~--------------S~ya~~A~~rl~ 168 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PN--------------SQYTTDATKRLV 168 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cC--------------ChhHHHHHHHHH
Confidence 1222333322210 01111234445555444421 22 222233332222
Q ss_pred cCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 216 IVPRAD-ILFCNFVREFGKKRDLVSALRAYDASKKH--LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 216 ~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
.+...- ..--.+...|.+.|.+..|..-|+.+.+. +.+........++.+|.+.|..++|.+....+.
T Consensus 169 ~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 169 FLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 111110 11113566677778888887777777765 223344566677777888888877777665554
No 169
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.45 Score=48.15 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=44.9
Q ss_pred HHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 008265 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (572)
Q Consensus 197 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 276 (572)
.+..+.+...+++-+.+...+|++......+..++...|.-++|.+.|-+-.. | ...+..|...++|.+|.
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHH
Confidence 34444455555555555555666666677777777777777777666533211 2 23345566666777776
Q ss_pred HHHHHH
Q 008265 277 AIYEDL 282 (572)
Q Consensus 277 ~~~~~m 282 (572)
++-+..
T Consensus 899 elaq~~ 904 (1189)
T KOG2041|consen 899 ELAQRF 904 (1189)
T ss_pred HHHHhc
Confidence 665544
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.03 E-value=0.026 Score=54.64 Aligned_cols=29 Identities=7% Similarity=0.122 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 008265 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSG 562 (572)
Q Consensus 531 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 562 (572)
....+|+.|-..| |..|-.+|+..|..+|
T Consensus 297 ~~~~~f~~iY~~~---d~d~rram~KSf~eS~ 325 (356)
T PLN03088 297 ALNKFFREIYQNA---DEDTRRAMMKSFVESN 325 (356)
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHhhhcC
Confidence 4556788777754 8888888998888765
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.02 E-value=0.021 Score=55.33 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=59.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH
Q 008265 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (572)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (572)
...+...|++++|+..|+++.+.. +.+...|..+..+|.+.|++++|+..++++.+.... +...|..+..+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-----P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-----PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHH
Confidence 344556677777777777776631 334556666667777777777777777777665321 44556666667777
Q ss_pred cCCHHHHHHHHHHHHHc
Q 008265 411 AGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 411 ~g~~~~a~~~~~~m~~~ 427 (572)
.|++++|...|++..+.
T Consensus 83 lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 83 LEEYQTAKAALEKGASL 99 (356)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 77777777777777664
No 172
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.00 E-value=0.099 Score=46.15 Aligned_cols=180 Identities=11% Similarity=0.009 Sum_probs=97.1
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...+-.....+...|++.+|++.|+.+....+... ....+...+..++.+.|+++.|...++...+. .|+...
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-----~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~ 77 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-----YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPK 77 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcc
Confidence 44555566778889999999999999998754321 23556667888999999999999999998886 444321
Q ss_pred hhhhhHHHHHHHHHH----------hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc
Q 008265 151 DGSGFKLLKNECQRL----------LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA 220 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~----------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 220 (572)
- -...++.+.+.+ .+.+...+|+..|+.+.+. |=......+|......+...
T Consensus 78 ~--~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~ 139 (203)
T PF13525_consen 78 A--DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNR 139 (203)
T ss_dssp H--HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHH
T ss_pred h--hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHH
Confidence 1 122222222221 1123344555555554432 22222333333322221110
Q ss_pred h-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhcCCHHHH
Q 008265 221 D-ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKS 275 (572)
Q Consensus 221 ~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~a 275 (572)
- ..--.+...|.+.|.+..|..-++.+.+.-... .....-.++.+|.+.|..+.+
T Consensus 140 la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 140 LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 0 111225667777777777777777776652111 123456666777777766643
No 173
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.98 E-value=0.054 Score=44.93 Aligned_cols=109 Identities=19% Similarity=0.259 Sum_probs=69.4
Q ss_pred HHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCC
Q 008265 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (572)
Q Consensus 334 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 413 (572)
....|+.+.+...+.++..+- .|.+-++... ..-......-++.+. ......++..+...|+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly-~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALY-RGDFLPDLDD----------EEWVEPERERLRELY-------LDALERLAEALLEAGD 77 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT---SSTTGGGTT----------STTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-
T ss_pred HHHCCCHHHHHHHHHHHHHHh-CCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccC
Confidence 345677888888887777654 3433333222 111122222222221 2345667777888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+++|..+...+.... +-+...|..+|.+|...|+...|.+.|+++.+
T Consensus 78 ~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 78 YEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999998774 55788999999999999999999999988764
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.98 E-value=0.34 Score=45.80 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=68.0
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
+.+..|.-+...|+...|.++-.+.. -||..-|...+.+++..++|++..++... . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 45555677778889888888877764 57999999999999999999987775432 1 23466889999999
Q ss_pred HhCCHhHHHHHHHHhh
Q 008265 445 EACQFDRAFRLFRSWT 460 (572)
Q Consensus 445 ~~g~~~~A~~~~~~m~ 460 (572)
+.|+..+|..+..++.
T Consensus 249 ~~~~~~eA~~yI~k~~ 264 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP 264 (319)
T ss_pred HCCCHHHHHHHHHhCC
Confidence 9999999999987754
No 175
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.96 E-value=0.035 Score=45.49 Aligned_cols=94 Identities=6% Similarity=-0.017 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHH
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (572)
.-.+..-+...|++++|..+|+.+.... +-+..-|-.|..++-..|++++|+..|.......+. |...+-.+..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~ 111 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 3344455667788888888888777631 223445666667777778888888888877776543 6667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 008265 407 ACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~ 426 (572)
++...|+.+.|.+.|+....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888877665
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.91 E-value=0.058 Score=46.22 Aligned_cols=86 Identities=15% Similarity=0.073 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
...+..+...+...|++++|...|++....... .+ ....+..+...+.+.|++++|...+.+....... +...+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 110 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALN 110 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHH
Confidence 345667777788889999999999988763211 11 1357788888889999999999999988876322 445566
Q ss_pred HHHHHHHHcCC
Q 008265 403 SLINACANAGL 413 (572)
Q Consensus 403 ~li~~~~~~g~ 413 (572)
.+...+...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 66677777666
No 177
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.65 Score=47.57 Aligned_cols=307 Identities=13% Similarity=0.041 Sum_probs=180.4
Q ss_pred hhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHH
Q 008265 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (572)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 197 (572)
.++..+...+.+..|+.+-+.+...-..- .. .+.-+......-. ...-+++++.+++-++.. ..+..+|..+
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~----Vl~~Wa~~kI~~~-d~~d~~vld~I~~kls~~--~~~~iSy~~i 513 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DR----VLLEWARRKIKQS-DKMDEEVLDKIDEKLSAK--LTPGISYAAI 513 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cH----HHHHHHHHHHhcc-CccchHHHHHHHHHhccc--CCCceeHHHH
Confidence 34667777888888888877764432111 11 2222221111101 122333444333322222 2445788889
Q ss_pred HHHHhcCCChHHHHHhhhcCCCch---------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH-----
Q 008265 198 VQLCVNKPDVNLAIRYACIVPRAD---------ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII----- 263 (572)
Q Consensus 198 l~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll----- 263 (572)
.+.....|+.+-|..+++.=|... .-+...+.-+.+.|+.+....++-.+... .+...+...+
T Consensus 514 A~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l~~~p~ 590 (829)
T KOG2280|consen 514 ARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTLRNQPL 590 (829)
T ss_pred HHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHHHhchh
Confidence 999999999999999988765543 33556778888899999888887766543 1222222222
Q ss_pred -----HHHHhc------------CCHHHHHHHHH--HHH----hCCCCCCHHHH-HHHHHHhcC--------ChHHHHHH
Q 008265 264 -----DVCGIC------------GDYMKSRAIYE--DLR----SQNVTLNIYVF-NSLMNVNAH--------DLKFTLEV 311 (572)
Q Consensus 264 -----~~~~~~------------g~~~~a~~~~~--~m~----~~g~~p~~~~~-~~ll~~~~~--------~~~~a~~~ 311 (572)
.-+++. ++-.++...|. ... ..|..|+..+- +..-..... +...-+.+
T Consensus 591 a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~l 670 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKL 670 (829)
T ss_pred hhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 111221 11111111111 000 01222222211 111111111 11112223
Q ss_pred HHHHHH-cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 312 YKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 312 ~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..++|++-+++-+.++
T Consensus 671 Q~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--------ipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 671 QRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--------IPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--------CcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 333322 2333344456666777888899999999988776 5899999999999999999998887766643
Q ss_pred HCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 391 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
...-|.-.+.+|.+.|+.++|.+++.+.... . -.+.+|.+.|++.+|.++--+
T Consensus 743 ------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 743 ------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 3677888999999999999999988776421 1 567889999999998887544
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.81 E-value=0.039 Score=47.09 Aligned_cols=98 Identities=16% Similarity=0.048 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+...+...|++++|...|+....... + ......+|..+...+...|++++|++.++....... ....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-D-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-c-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHH
Confidence 44556666677778888888888888775310 0 001234677777788888888888888888776521 12344555
Q ss_pred HHHHHH-------HcCCHHHHHHHHHHH
Q 008265 404 LINACA-------NAGLVEQAMHLFEEM 424 (572)
Q Consensus 404 li~~~~-------~~g~~~~a~~~~~~m 424 (572)
+...+. ..|++++|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 555555 667766555555543
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.79 E-value=0.12 Score=52.45 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=65.2
Q ss_pred CCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHh------cC----ChHHHHHHHHH
Q 008265 251 LSSPNMYICRTIIDVCGICG-----DYMKSRAIYEDLRSQNVTLNI-YVFNSLMNVN------AH----DLKFTLEVYKN 314 (572)
Q Consensus 251 ~~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~------~~----~~~~a~~~~~~ 314 (572)
+.+.+...|...+++..... +.+.|.++|++..+. .|+- ..|..+..++ .. +...+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34556777777777754332 266777777777765 4552 2232222111 11 01122222222
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 315 MQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 315 m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.... ....+...+.++.-.....|++++|...+++... +.|+...|..+...+...|+.++|.+.+.+....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1111 1122334444443344445566666666665555 3455555555555555666666666665555543
No 180
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.75 E-value=0.14 Score=48.32 Aligned_cols=137 Identities=16% Similarity=0.039 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH----HCCC-CCchh
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLE-AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML----SAGV-TPNTI 399 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~-~p~~~ 399 (572)
.|..|-+.|.-.|+++.|+...+.-..+- ..|.-......+..+..++.-.|+++.|.+.++... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666667778887776654433211 122212234466777777777788887777666542 2221 12234
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQ----AG-CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
+..+|...|.-..++++|+.++.+-.. .+ .--....+.+|..+|...|..++|+.+.+.-.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455677777777778888887776432 11 1123456778888888888888888777665443
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.75 E-value=0.0076 Score=42.21 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=48.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 232 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
.+.|++++|.++|+.+.+.... +...+..+..+|.+.|++++|.++++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4678889999999988776433 6677778889999999999999999988876 46655555443
No 182
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.75 E-value=0.053 Score=44.96 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIYV 293 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 293 (572)
.....++..+...|+++.|.++...+.... +.+...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 356667888889999999999999998863 34778999999999999999999999998853 377776554
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.74 E-value=0.0068 Score=42.48 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=24.7
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+.|++++|.++|+.+... .+-+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345555555555555442 1224444444555555555555555555555444
No 184
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.70 E-value=0.044 Score=44.94 Aligned_cols=96 Identities=10% Similarity=0.006 Sum_probs=79.9
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
..-.+..-+...|++++|..+|+-+...... +..-|-.|.-+|-..|++++|+..|....... +-|...+-.+-.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3334455567899999999999999887543 55677888889999999999999999998876 456788888899999
Q ss_pred HhCCHhHHHHHHHHhhhc
Q 008265 445 EACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~ 462 (572)
..|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987653
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.69 E-value=0.2 Score=51.05 Aligned_cols=148 Identities=13% Similarity=0.105 Sum_probs=97.1
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhc--------CCHHH
Q 008265 209 LAIRYACIVPRADILFCNFVREFGKK-----RDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGIC--------GDYMK 274 (572)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~--------g~~~~ 274 (572)
+..+.-...+.+...|...+++.... ++.+.|.++|++..+. .|+ ...|..+..++... .++..
T Consensus 325 e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~ 402 (517)
T PRK10153 325 MQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAA 402 (517)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 34444455666667888877765442 2377999999999885 354 34444433333222 12334
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHH--HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 275 SRAIYEDLRSQN-VTLNIYVFNS--LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 275 a~~~~~~m~~~g-~~p~~~~~~~--ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
+.+......... ...+...|.+ ++....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++..
T Consensus 403 a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 403 LSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444433321 2233444544 34446699999999999999865 688899999999999999999999999998
Q ss_pred HHHHhCCCCCCHHHH
Q 008265 352 HLEAKGVLKLDVFTY 366 (572)
Q Consensus 352 ~~~~~~~~~~~~~~~ 366 (572)
. +.|...+|
T Consensus 481 ~------L~P~~pt~ 489 (517)
T PRK10153 481 N------LRPGENTL 489 (517)
T ss_pred h------cCCCCchH
Confidence 7 45554444
No 186
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.65 E-value=0.075 Score=45.51 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (572)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344677788888999999999999999987643332 3578889999999999999999999998753 2345666677
Q ss_pred HHHHHHhCC
Q 008265 440 LQACVEACQ 448 (572)
Q Consensus 440 i~~~~~~g~ 448 (572)
..++...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 777777666
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.61 E-value=0.014 Score=40.45 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=23.8
Q ss_pred HHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
.+.+.|++++|++.|+++.+.... +...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444211 334444444444444444444444444443
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.52 E-value=0.017 Score=40.02 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
+...+.+.|++++|.+.|+.+.+... -+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677888899999999998888652 26678888888888999999999999888765
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.40 E-value=0.2 Score=39.46 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=45.4
Q ss_pred HHHHccccHHHHHHHHHHHHHCCCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHH
Q 008265 371 KVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN----SQCCNILLQACV 444 (572)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~ 444 (572)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+|++.... .|+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH
Confidence 344556666666666666666655433 223444555566666666666666666543 122 111112223455
Q ss_pred HhCCHhHHHHHHHH
Q 008265 445 EACQFDRAFRLFRS 458 (572)
Q Consensus 445 ~~g~~~~A~~~~~~ 458 (572)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 56666666665543
No 190
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.40 E-value=0.1 Score=44.47 Aligned_cols=96 Identities=16% Similarity=0.103 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 440 (572)
...|..+...+...|++++|+..|++.......+ ...+|..+...+...|+.++|...++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4567777888888999999999999998663332 23578889999999999999999999988752 33345566666
Q ss_pred HHHH-------HhCCHhHHHHHHHHh
Q 008265 441 QACV-------EACQFDRAFRLFRSW 459 (572)
Q Consensus 441 ~~~~-------~~g~~~~A~~~~~~m 459 (572)
..+. +.|+++.|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 788888777766654
No 191
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.33 E-value=0.064 Score=48.48 Aligned_cols=82 Identities=12% Similarity=0.093 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccccHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 381 (572)
+++++|+..|.+.++.... |.+-|..-..+|++.|.++.|++-.+.... +.|. ..+|..|-.+|...|++++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~------iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS------IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred hhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh------cChHHHHHHHHHHHHHHccCcHHH
Confidence 3455555555555543322 344444444555555555555544444443 2222 2245555555555555555
Q ss_pred HHHHHHHHHH
Q 008265 382 ALKVKEDMLS 391 (572)
Q Consensus 382 a~~~~~~m~~ 391 (572)
|++.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 5555554444
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.33 E-value=0.077 Score=48.62 Aligned_cols=92 Identities=9% Similarity=-0.031 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc----h
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN----T 398 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~ 398 (572)
|...+..+.+.|++++|...|+.+.+ ..|+. ..+-.+..+|...|++++|...|+.+.+. .|+ .
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~------~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~ 217 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK------KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAA 217 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH------HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchh
Confidence 43433333444555555555555544 12322 23444444455555555555555555443 121 1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 399 ITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
..+-.+...+...|+.++|..+|+.+.+
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222233344444555555555554444
No 193
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.29 E-value=0.05 Score=43.32 Aligned_cols=98 Identities=13% Similarity=0.047 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
|..++..+|.++++.|+.+....+.+..=.....|....+. --......|+..+..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~------------------------~~~~spl~Pt~~lL~ 56 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD------------------------YPPSSPLYPTSRLLI 56 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc------------------------cCCCCCCCCCHHHHH
Confidence 34567777777777777777777665543211111000000 112234566777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQ-AGCEPNSQCCNILLQACV 444 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~ 444 (572)
+++.+|+..|++..|.++.+...+ .+++.+..+|..|+.=+.
T Consensus 57 AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 57 AIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777777776653 456666667776666443
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.28 E-value=0.41 Score=37.76 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=10.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 008265 330 LLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
+...+...|++++|..++++..
T Consensus 44 lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 44 LASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444455555555554444
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.28 E-value=0.086 Score=48.31 Aligned_cols=99 Identities=10% Similarity=0.044 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHH
Q 008265 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPNSQCCN 437 (572)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~ 437 (572)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|+.+.+.-- ......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555556668888888888888876 4443 4566778888888888888888888876410 11234444
Q ss_pred HHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 438 ILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
.+...+...|+.++|.++|+++.+..+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 556667788888888888888776543
No 196
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.27 E-value=0.016 Score=41.92 Aligned_cols=70 Identities=13% Similarity=0.006 Sum_probs=54.3
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~ 141 (572)
..+|+.+...+...|++++|+..|++..+. .............++..+...+...|++++|+..+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 678899999999999999999999998865 2111112223466788889999999999999999988654
No 197
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.25 E-value=1 Score=42.03 Aligned_cols=59 Identities=10% Similarity=-0.017 Sum_probs=37.9
Q ss_pred hhcCChhHHHHHHHHHHhhc--CChhHHHhHHHHHHHhhhhHhhhhhC-ChhHHHHHHHHhhhc
Q 008265 82 AKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL 142 (572)
Q Consensus 82 ~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~m~~~ 142 (572)
.+.|+.+.|..++.+..... ..|+.. ..+ ...+..+.......+ +++.|...+++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~-~~L-a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMA-EEL-ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHH-HHH-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46799999999999887653 244332 233 334444445555666 888888887765543
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.25 E-value=0.025 Score=39.67 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC-CHhHHHHHHHHh
Q 008265 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC-QFDRAFRLFRSW 459 (572)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m 459 (572)
..|..+...+...|++++|+..|++..+.. +-+...|..+..++.+.| ++++|.+.+++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344444445555555555555555554442 223344444444555555 355555555443
No 199
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.24 E-value=0.069 Score=48.28 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=78.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 411 (572)
+-..+.+++.+|+..|.+..++ .+-|.+-|..-..+|.+.|.++.|++-.+........ -..+|..|-.+|...
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHcc
Confidence 4578888999999999999874 2456667788888899999999998888887765221 346788899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008265 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (572)
Q Consensus 412 g~~~~a~~~~~~m~~~~~~p~~~~~~~li 440 (572)
|++++|.+.|++.++. .|+-.+|..=+
T Consensus 163 gk~~~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred CcHHHHHHHHHhhhcc--CCCcHHHHHHH
Confidence 9999999998888764 77777664433
No 200
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.23 E-value=1 Score=41.98 Aligned_cols=177 Identities=11% Similarity=0.013 Sum_probs=105.4
Q ss_pred hhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHhC----C-CCCcccchHHH
Q 008265 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEF----R-LPVKELDEEFR 196 (572)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g-~~~~a~~~~~~~~~~----~-~~~~~~~~~~~ 196 (572)
..+.|+++.|..++.+........++.....+-.++......+.+.+ +++.|...+++..+. + ..... ..+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~-~~~~- 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLS-PDGS- 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccC-CcHH-
Confidence 45889999999999988776312222223344445555555556667 888888777765432 0 00000 0000
Q ss_pred HHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 008265 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS---ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (572)
Q Consensus 197 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 273 (572)
-++ -.++..++.+|...+..+. |..+++.+...... ...++-.-++.+.+.++.+
T Consensus 81 -------------elr--------~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~ 138 (278)
T PF08631_consen 81 -------------ELR--------LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEE 138 (278)
T ss_pred -------------HHH--------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChh
Confidence 000 1567778888888887654 55566666444222 2445556677777799999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHh---c-CChHHHHHHHHHHHHcCCCCCH
Q 008265 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVN---A-HDLKFTLEVYKNMQKLGVMADM 324 (572)
Q Consensus 274 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~-~~~~~a~~~~~~m~~~~~~~~~ 324 (572)
++.+.+.+|...- .-....+..++... . .....+...++.+....+.|..
T Consensus 139 ~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 139 EYEEILMRMIRSV-DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 9999999999762 11334455554443 2 4566777777777655555554
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.23 E-value=0.6 Score=39.19 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=101.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC---CCC
Q 008265 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG---VTP 396 (572)
Q Consensus 320 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p 396 (572)
+.|+...--.|..+..+.|+..+|...|.+.. .|...-|......+..+....+++..|...++++-+.. -.|
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal----sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL----SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh----ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 45677777788899999999999999999987 57677788888899999999999999999999988763 233
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
| +.-.+.+.|...|...+|+.-|+..... -|+...-...-..+.+.|+.+++..-+..+
T Consensus 161 d--~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 161 D--GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred C--chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3 3455678889999999999999999876 455544444444566788777666554443
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.13 E-value=0.046 Score=38.31 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccc-cHHHHHHHHHHHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKEDMLS 391 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 391 (572)
...|..+...+...|++++|+..|.+..+.. +.+...|..+..+|.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-----p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-----PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-----TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455555556666666666666666665531 223445555556666666 56666666655543
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.42 Score=43.55 Aligned_cols=111 Identities=16% Similarity=0.098 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---ccHHHHHHHHHHHHHCCCCCchh
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA---KWWQMALKVKEDMLSAGVTPNTI 399 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~ 399 (572)
|...|-.|...|...|+.+.|...|.+..++ . .++...+..+..++... ..-.++.++|+++...... |..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~---g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ir 228 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--A---GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIR 228 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--C---CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHH
Confidence 7889999999999999999999999999885 2 34555666666655432 2356889999999887433 566
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
....|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 67778888999999999999999999863 33344545544
No 204
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.94 E-value=0.23 Score=39.56 Aligned_cols=100 Identities=11% Similarity=0.057 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCC
Q 008265 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511 (572)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (572)
|..++..+|.++++.|+++....+++....-+........ .+-...+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~--------------------------------~~~~~spl 48 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEG--------------------------------DYPPSSPL 48 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccC--------------------------------ccCCCCCC
Confidence 5678899999999999999999998876532211000000 01234457
Q ss_pred CCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCC
Q 008265 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTV-GLSPNHISWTILIDACGGSGN 563 (572)
Q Consensus 512 ~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~ 563 (572)
.|+..+..+++.+|+. +...|.++.+...+. +++-+..+|..|+.-+...-+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 8999999999999986 567999999988765 888889999999966655444
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.91 E-value=1.3 Score=40.27 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=31.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 404 LINACANAGLVEQAMHLFEEMLQA--GCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
+..-|.+.|.+..|..-++.+.+. +.+........++.+|.+.|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344456666666666666666543 22223444555666666666666666655443
No 206
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.86 E-value=0.45 Score=45.64 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=41.9
Q ss_pred CccccccchhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhc
Q 008265 51 TVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSE 101 (572)
Q Consensus 51 ~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 101 (572)
.++.-.+.+.+.++.+|+. +.+|-.|++-+...|..++..+++++|...-
T Consensus 23 ~i~~D~lrLRerIkdNPtn-I~S~fqLiq~~~tq~s~~~~re~yeq~~~pf 72 (660)
T COG5107 23 NIHGDELRLRERIKDNPTN-ILSYFQLIQYLETQESMDAEREMYEQLSSPF 72 (660)
T ss_pred CCCchHHHHHHHhhcCchh-HHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 3444455778888888887 9999999999999999999999999998653
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.81 E-value=1.2 Score=39.22 Aligned_cols=171 Identities=15% Similarity=0.105 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHh
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI--YVFNSLMNVN 301 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~ 301 (572)
.....+.+.|++++|.+.|+.+...... --....-.+..++.+.|+++.|...++++.+. -|+. .-+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHH
Confidence 3455566778899999999888765321 22345566778888889999999999888765 2221 1222222221
Q ss_pred cCChHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008265 302 AHDLKFTLEVYKNMQKL-GVMAD-------MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~-~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (572)
+ .+...... ....| ...+..++.-|=...-..+|...+..+.... - ..--.+..-|
T Consensus 88 ~--------~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l-------a-~~e~~ia~~Y 151 (203)
T PF13525_consen 88 S--------YYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL-------A-EHELYIARFY 151 (203)
T ss_dssp H--------HHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH-------H-HHHHHHHHHH
T ss_pred H--------HHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH-------H-HHHHHHHHHH
Confidence 1 01110000 00001 1123344444444445555555554444311 0 1111244556
Q ss_pred HccccHHHHHHHHHHHHHCCCCCchh----hHHHHHHHHHHcCCHHH
Q 008265 374 ADAKWWQMALKVKEDMLSAGVTPNTI----TWSSLINACANAGLVEQ 416 (572)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~ 416 (572)
.+.|.+..|..-++.+.+. -|+.. ..-.++.+|.+.|..+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHH
Confidence 6777777777777776665 33332 34556666666666553
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.81 E-value=1.8 Score=41.19 Aligned_cols=56 Identities=5% Similarity=-0.128 Sum_probs=45.0
Q ss_pred HHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHH
Q 008265 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (572)
Q Consensus 78 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 137 (572)
-.-+++.|+...-+.+|+..++.|-+--. ....+|..+-.+|.-.+++++|+++..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~----tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLS----TLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHH----HHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 45689999999999999999998866321 225667888888999999999998764
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.75 E-value=1.6 Score=44.02 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHH-H----------HHHHHH
Q 008265 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT-Y----------STIVKV 372 (572)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~----------~~li~~ 372 (572)
.+..|-++|.+|-. ...+++.....++|.+|..+-+...+ +.||++. | .-.-.+
T Consensus 762 ~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe------~~~dVy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 762 SPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE------FKDDVYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred ccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc------ccccccchHHHHhhhhhhHHHHHHH
Confidence 45566677766643 23456777778888888877776655 4455432 1 122345
Q ss_pred HHccccHHHHHHHHHHHHHC
Q 008265 373 FADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~ 392 (572)
|.+.|+-.+|.++++++...
T Consensus 827 fhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 827 FHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHhcchHHHHHHHHHhhhh
Confidence 66667777777777776543
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.71 E-value=0.88 Score=45.94 Aligned_cols=174 Identities=11% Similarity=0.024 Sum_probs=100.3
Q ss_pred hHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhh----hCChhHHHHHHHHhhhcCCCCc
Q 008265 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR----EGRIDCVVGVLKKLNELGVAPL 147 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~m~~~~~~p~ 147 (572)
.....+++.+.=.|+-+.+++++....+.+---.....+. .=.|..++..++. ....+.|.++++.+.+. .|+
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~-LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~ 265 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALV-LLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPN 265 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHH-HHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCC
Confidence 3567777888888999999999988765422112222222 2233333333333 45667889999988886 676
Q ss_pred chhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHH
Q 008265 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (572)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~l 227 (572)
.. .+...-.-+ ....|++++|++.|+...... ..|..+- ...+--+
T Consensus 266 s~----lfl~~~gR~--~~~~g~~~~Ai~~~~~a~~~q------~~~~Ql~----------------------~l~~~El 311 (468)
T PF10300_consen 266 SA----LFLFFEGRL--ERLKGNLEEAIESFERAIESQ------SEWKQLH----------------------HLCYFEL 311 (468)
T ss_pred cH----HHHHHHHHH--HHHhcCHHHHHHHHHHhccch------hhHHhHH----------------------HHHHHHH
Confidence 54 332222222 233788999999888654211 1111110 1344556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH-HHHHhcCCH-------HHHHHHHHHHH
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII-DVCGICGDY-------MKSRAIYEDLR 283 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~~~g~~-------~~a~~~~~~m~ 283 (572)
.-.+.-.++|++|.+.|..+.+..-. +...|.-+. .++...|+. ++|.++|.+..
T Consensus 312 ~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 66777788999999999888775221 222333322 233445666 66666666654
No 211
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.70 E-value=2.2 Score=41.31 Aligned_cols=193 Identities=14% Similarity=0.143 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHhcC------ChHHHHHHHHHHHHcCCCCC
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL-------MNVNAH------DLKFTLEVYKNMQKLGVMAD 323 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-------l~~~~~------~~~~a~~~~~~m~~~~~~~~ 323 (572)
.++..++....+.++...|.+.+.-+.-- .|+...-.-+ -...++ +...-+.++.......+..-
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH
Confidence 45666666677777777776666655543 3333221111 111221 23334555555555443311
Q ss_pred HHHHHHHH---HHHHHcCC-hHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHH---ccccHHHHHHHHHHHHHC
Q 008265 324 MASYNILL---KACCLAGN-TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK----VFA---DAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 324 ~~~~~~ll---~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~----~~~---~~g~~~~a~~~~~~m~~~ 392 (572)
....-++ .-+-+.|. -++|.++++.+.+. ..-|...-|.+.. +|. ....+.+-+.+-+-+.+.
T Consensus 377 -QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f-----t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~ 450 (549)
T PF07079_consen 377 -QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF-----TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV 450 (549)
T ss_pred -HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 1122222 23444555 78899999998873 2334444333322 222 234566667777777888
Q ss_pred CCCCchhh----HHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 393 GVTPNTIT----WSSLINA--CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 393 g~~p~~~~----~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
|+.|-.+. -|.|.+| +...|++.++.-.-..+.+ +.|+..+|..+.-+.....++++|+.++.++
T Consensus 451 gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 451 GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 98875544 3333332 4567899988877776665 5899999999999999999999999999875
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.64 E-value=2.8 Score=42.43 Aligned_cols=200 Identities=13% Similarity=0.148 Sum_probs=115.6
Q ss_pred HHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 008265 174 FVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS 253 (572)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 253 (572)
.+.-++++.+.|-.|++. .+...|+-.|.+.+|.++|.+-... +..+..|...+.++.|.+++..-
T Consensus 619 li~EL~~~k~rge~P~~i----LlA~~~Ay~gKF~EAAklFk~~G~e----nRAlEmyTDlRMFD~aQE~~~~g------ 684 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDL----LLADVFAYQGKFHEAAKLFKRSGHE----NRALEMYTDLRMFDYAQEFLGSG------ 684 (1081)
T ss_pred HHHHHHHHHhcCCCchHH----HHHHHHHhhhhHHHHHHHHHHcCch----hhHHHHHHHHHHHHHHHHHhhcC------
Confidence 334456777777666542 3567788889999998888654322 33455555555555555544321
Q ss_pred CcHHHHHHHHH-----------------HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008265 254 PNMYICRTIID-----------------VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (572)
Q Consensus 254 ~~~~~~~~ll~-----------------~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~ 316 (572)
+...-..+++ .+...|+.++|..+. +-.|-.+.+.++-.++.
T Consensus 685 -~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~--------------------~d~gW~d~lidI~rkld 743 (1081)
T KOG1538|consen 685 -DPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEIC--------------------GDHGWVDMLIDIARKLD 743 (1081)
T ss_pred -ChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhh--------------------hcccHHHHHHHHHhhcc
Confidence 1111122221 122223333322221 11122233333333332
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC
Q 008265 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (572)
Q Consensus 317 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 396 (572)
. .+..+...+..-+.+...+..|.++|..|-.+ ..++......++|++|..+-+...+. .|
T Consensus 744 ~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------------ksiVqlHve~~~W~eAFalAe~hPe~--~~ 804 (1081)
T KOG1538|consen 744 K----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------------KSLVQLHVETQRWDEAFALAEKHPEF--KD 804 (1081)
T ss_pred h----hhhhHHHHHHHHHhhccccchHHHHHHHhccH-------------HHHhhheeecccchHhHhhhhhCccc--cc
Confidence 2 24445555555566677788899999887642 24567788899999999998887664 45
Q ss_pred chhh-----------HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 397 NTIT-----------WSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 397 ~~~~-----------~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
|+.. |.-.=.+|.+.|+-.+|.++++++...
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 5432 344556788999999999999998654
No 213
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.57 E-value=0.44 Score=47.32 Aligned_cols=159 Identities=9% Similarity=0.082 Sum_probs=97.6
Q ss_pred HhHhhcCChhHHHHHHH-HHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHH
Q 008265 79 SKLAKDGRLEEFAMIVE-SVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (572)
Q Consensus 79 ~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~ 157 (572)
....-+++++++.++.+ .-.-..++ ......++.-+-+.|..+.|+.+-.+-.. -|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~---------~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeL 327 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP---------KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFEL 327 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG-----------HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC---------hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHH
Confidence 34445788888766664 11111122 22344556667788888888888765322 4555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCH
Q 008265 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (572)
Q Consensus 158 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~ 237 (572)
.+. .|+++.|.++.++ .++...|..|.+...+.|+++-|++.|.+.. -+..|+-.|.-.|+.
T Consensus 328 Al~-------lg~L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----d~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 328 ALQ-------LGNLDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK----DFSGLLLLYSSTGDR 389 (443)
T ss_dssp HHH-------CT-HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----HHHHHHHHHHCT-H
T ss_pred HHh-------cCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----CccccHHHHHHhCCH
Confidence 544 7999999887653 2345678899999999999999988887764 466777778888888
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 282 (572)
+.-.++-+....+| -+|....++.-.|+.++..+++.+-
T Consensus 390 ~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 390 EKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 87777777666553 2455566666678888877776554
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.56 E-value=0.11 Score=36.85 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=46.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
-..|.+.+++++|.++++.+.+.++. +...|...-.++.+.|++++|.+.|+...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35678889999999999988886433 5667777888889999999999999988876
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.53 E-value=0.11 Score=37.34 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-GVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.+++.+...|...|++++|+..|++..+..+. |.-.|+ ..++..+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777888888888888777765321 211122 3456666777777777777777777654
No 216
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.48 E-value=0.29 Score=43.84 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=34.8
Q ss_pred CchhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 008265 396 PNTITWSSLINACAN-----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (572)
Q Consensus 396 p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 446 (572)
.|..+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+=+.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg 120 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG 120 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc
Confidence 355556666655543 245666677778888888888888888888776443
No 217
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=1.6 Score=41.67 Aligned_cols=248 Identities=12% Similarity=0.027 Sum_probs=130.1
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~ 243 (572)
..++..|+..+....+. -|++...|..-...+...|+++.|.--.+.- +.........-.++...++..+|.+.
T Consensus 62 ~k~Y~nal~~yt~Ai~~--~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDM--CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HhhHHHHHHHHHHHHHh--CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence 45566666666555543 3555566666666666666666654433221 11111122222233333333333332
Q ss_pred HH---------------HHHhcC-CCCcHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----hc
Q 008265 244 YD---------------ASKKHL-SSPNMYICRTI-IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NA 302 (572)
Q Consensus 244 ~~---------------~m~~~~-~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~----~~ 302 (572)
++ ...... -+|....|..+ ..++.-.|++++|.+.-....+.. ....+..++++ |.
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYN 216 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccc
Confidence 22 111111 11333333332 234556688888888777766542 23445555665 33
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHH---HHHHHH----------HHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYN---ILLKAC----------CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~---~ll~~~----------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 369 (572)
.+.+.+...|++.+..+ |+...-. .....| .+.|++.+|.+.|.+........ ..++...|...
T Consensus 217 ~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-~~~naklY~nr 293 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-KKTNAKLYGNR 293 (486)
T ss_pred cchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-cchhHHHHHHh
Confidence 67788888888777643 3433222 222222 35667777777777777755443 55666667666
Q ss_pred HHHHHccccHHHHHHHHHHHHHCCCCCchhh-HHHH--HHHHHHcCCHHHHHHHHHHHHHc
Q 008265 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTIT-WSSL--INACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~l--i~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.....+.|+..+|+.--++..+. |... ...+ ..++.-.++|++|++-++...+.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67777777777777777766643 3322 2222 22344456677777777666554
No 218
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.45 E-value=0.3 Score=43.78 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008265 222 ILFCNFVREFGK-----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (572)
Q Consensus 222 ~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 296 (572)
.+|-+.+..+.. .+.++-....+..|.+.|+..|..+|+.||+.+-+-. +.|. ..+..
T Consensus 68 ~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nvfQ~ 130 (406)
T KOG3941|consen 68 DSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NVFQK 130 (406)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HHHHH
Confidence 556666655543 3667777777888888888888888888887643322 2222 23333
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHH
Q 008265 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT-VLAQEIYGEVKH 352 (572)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 352 (572)
+.-.|-+.-+-+..++++|...|+.||..+-..+++++.+.+-. .+..++.-.|.+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 33345556677889999999999999999999999999877653 334444444444
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.65 Score=42.38 Aligned_cols=98 Identities=8% Similarity=-0.078 Sum_probs=65.2
Q ss_pred CCcccchHHHHHHHHhcCCChHHHHHhhhc----CCCchhHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCcHHHH
Q 008265 187 PVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKK---RDLVSALRAYDASKKHLSSPNMYIC 259 (572)
Q Consensus 187 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~ 259 (572)
.|.+...|..|..+|...|+.+.|...|.. .+++...+..+..++..+ .+-.++..+|+++.+.. +-|+...
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 577777788888888888888877776654 355555555555444433 33567777777776643 2245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 260 RTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 260 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
..+-..+...|++.+|...++.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66666777778888888888777766
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.31 E-value=0.16 Score=36.01 Aligned_cols=55 Identities=15% Similarity=0.002 Sum_probs=25.5
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.|.+.+++++|.++++.+... .+.+...|.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL-----DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh-----CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344455555555555555442 1223334444444455555555555555554443
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.30 E-value=0.56 Score=45.66 Aligned_cols=65 Identities=12% Similarity=-0.068 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.+...++.+..+|.+.|++++|+..|++..+ +.|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999887 46664 35899999999999999999999998875
No 222
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=3.1 Score=39.77 Aligned_cols=153 Identities=9% Similarity=-0.043 Sum_probs=105.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---H--
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV--CGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN---V-- 300 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~-- 300 (572)
...+.-.|++++|.++-..+.+.. ....+...+++ +--.++.+.+...|++-... .|+...-...-. .
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHH
Confidence 355667799999999887776642 22344444443 34457789999999988866 466544332211 1
Q ss_pred ----------hcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 301 ----------NAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (572)
Q Consensus 301 ----------~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (572)
..|++..|.+.|.+.+.. +++++...|........+.|+.++|+.--++...+ .+ .++..
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------D~-syika 323 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------DS-SYIKA 323 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------CH-HHHHH
Confidence 126789999999988764 45667777888888889999999999999988762 22 22333
Q ss_pred HH--HHHHHccccHHHHHHHHHHHHHC
Q 008265 368 TI--VKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 368 ~l--i~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.+ ..++...++|++|.+-++...+.
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33 34555678899999999887765
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=2.3 Score=38.05 Aligned_cols=59 Identities=10% Similarity=0.127 Sum_probs=27.4
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
+.++......|.+.-.+.++.+..+...+-+......|.+.-.+.|+.+.|..+|+...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33444444444444444445544444333344444444444444555555555555443
No 224
>PRK15331 chaperone protein SicA; Provisional
Probab=95.03 E-value=0.88 Score=37.71 Aligned_cols=88 Identities=10% Similarity=-0.105 Sum_probs=67.9
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcC
Q 008265 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (572)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 412 (572)
-+...|++++|..+|.-+.... .-+..-|..|..++-..+++++|+..|......+.. |...+-....+|...|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-----~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-----FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 4457899999999998887632 234555677777777889999999999887766543 5566667788899999
Q ss_pred CHHHHHHHHHHHHH
Q 008265 413 LVEQAMHLFEEMLQ 426 (572)
Q Consensus 413 ~~~~a~~~~~~m~~ 426 (572)
+.+.|...|....+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988876
No 225
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.97 E-value=2.6 Score=37.77 Aligned_cols=186 Identities=11% Similarity=0.032 Sum_probs=110.6
Q ss_pred hHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc-CCCCcchh
Q 008265 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL-GVAPLELF 150 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~ 150 (572)
..|+.- ..-.+.|++++|...|+.+....+- +.....+...++-++-+.+++++|+...++..+. +-+||.
T Consensus 36 ~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~-----s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-- 107 (254)
T COG4105 36 ELYNEG-LTELQKGNYEEAIKYFEALDSRHPF-----SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-- 107 (254)
T ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCC-----CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh--
Confidence 444444 4566789999999999999977543 1123666777888899999999999999888776 334443
Q ss_pred hhhhhHHHHHHHHHHh-------hhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCch-h
Q 008265 151 DGSGFKLLKNECQRLL-------DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD-I 222 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~-------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~ 222 (572)
-|-.++++.+.+. +......|..-|+++.+.- |++.. ...|..-...+...- .
T Consensus 108 ---dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Y--------------a~dA~~~i~~~~d~LA~ 168 (254)
T COG4105 108 ---DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRY--------------APDAKARIVKLNDALAG 168 (254)
T ss_pred ---hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcc--------------hhhHHHHHHHHHHHHHH
Confidence 5566666555431 1222333334444443321 22211 111111110000000 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSP---NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
.=-.+.+.|.+.|.+..|..-+++|.+. .+- ....+-.+..+|...|-.++|.+.-.-+...
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 1123677888888888888888888776 221 2235566677788888888777776666544
No 226
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.96 E-value=3.5 Score=39.19 Aligned_cols=120 Identities=13% Similarity=0.005 Sum_probs=56.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCh
Q 008265 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMA-DMASYNILLKACCLAGNT 340 (572)
Q Consensus 263 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~-~~~~-~~~~~~~ll~~~~~~g~~ 340 (572)
.+++.+.|+..++-.+++.+.+. .|....+...+.+..|+. ++.-++...+. ..+| +....-.+..+-...|++
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKA--EPHPDIALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 34556666666666666666655 344444444444444432 11111111110 1122 233444455555556666
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cccHHHHHHHHHHHHHC
Q 008265 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AKWWQMALKVKEDMLSA 392 (572)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~ 392 (572)
..|..--+.... ..|....|..|.+.-.. .|+-.++...+.+..+.
T Consensus 346 ~~ARa~Aeaa~r------~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 346 SAARAKAEAAAR------EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhh------hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 555554444443 34555555555544332 35556665555555544
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.78 E-value=0.62 Score=45.36 Aligned_cols=70 Identities=9% Similarity=0.021 Sum_probs=57.3
Q ss_pred CchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc
Q 008265 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 67 p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~ 142 (572)
|+. ...++.+..+|...|++++|+..|+..++..++.. . ...++.++...|...|++++|++.+++..+.
T Consensus 72 P~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a--e---A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKT-AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD--E---AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch--H---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444 78899999999999999999999999998854421 1 0134677888899999999999999999885
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.77 E-value=0.21 Score=44.83 Aligned_cols=102 Identities=12% Similarity=0.008 Sum_probs=79.3
Q ss_pred hHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhh
Q 008265 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 151 (572)
..|+.-+. +.+.|++..|...|...++..++ +....+++..+...+...|++++|..+|..+.+. .|+...
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~-----s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~K- 213 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKYPN-----STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSPK- 213 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCC-----CcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCCC-
Confidence 46776655 56778899999999999998765 2234777888999999999999999999999886 343221
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC
Q 008265 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (572)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 184 (572)
.=+.+++....+.+.|+.++|...|+++.+.
T Consensus 214 --ApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 214 --APDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred --ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3345566555667789999999999999875
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.74 E-value=4.2 Score=39.13 Aligned_cols=161 Identities=15% Similarity=0.094 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHH----HHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 261 TIIDVCGICGDYMKSRAIYEDLRSQNV--TLNIY----VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332 (572)
Q Consensus 261 ~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~----~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 332 (572)
.++-+|....+++...++.+.|....- .++.. .|...+.- ..|+.++|++++..+....-.++..++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 333347777788888888887776410 00100 11111111 13677788888777555555567777766665
Q ss_pred HHHH---------cCChHHHHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHcc-ccHHHHHHHH---H-HHHHCCC-
Q 008265 333 ACCL---------AGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADA-KWWQMALKVK---E-DMLSAGV- 394 (572)
Q Consensus 333 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~-g~~~~a~~~~---~-~m~~~g~- 394 (572)
.|-. ...++.|+..|.+.-+ +.||.+. +.+|+...... ..-.+..++- . .+.+.|.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe------~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE------IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc------CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 5432 1125667777766554 3444432 22222222211 1111222222 1 1122222
Q ss_pred --CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 395 --TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 395 --~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
..|--.+.+++.++.-.|+.++|.+..++|.+.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 223334567777888888888888888888765
No 230
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.72 E-value=6.7 Score=41.40 Aligned_cols=370 Identities=14% Similarity=0.081 Sum_probs=164.3
Q ss_pred cCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCC----CCcc-hhhhhhhHHH
Q 008265 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV----APLE-LFDGSGFKLL 158 (572)
Q Consensus 84 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~----~p~~-~~~~~~~~~l 158 (572)
.+++..|.+.++.+...--....+...+....+..++ ..+.+..+++++.++.+..... .|+. ...-..+..+
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l--~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~ll 229 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL--HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLL 229 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH--HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 3799999999998876532222222111122222222 2355667778887777644321 1111 1123355566
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHh---CCCCCcccchHH--HHHHHHhcCCC--hHHHHHhhhcCCCch-hHHHHHH--
Q 008265 159 KNECQRLLDSGEVEMFVGLMEVLEE---FRLPVKELDEEF--RIVQLCVNKPD--VNLAIRYACIVPRAD-ILFCNFV-- 228 (572)
Q Consensus 159 ~~~~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~--~ll~~~~~~g~--~~~a~~~~~~~~~~~-~~~~~li-- 228 (572)
++.++.+ ..|+++.+...+.++.+ ..........|. ..+..-...+. .+...-.|.+++..+ .+..-++
T Consensus 230 l~l~~~l-~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~ 308 (608)
T PF10345_consen 230 LDLCCSL-QQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSG 308 (608)
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHH
Confidence 6666554 45666666655554432 221111000000 00000000000 000033566666655 1111122
Q ss_pred HHHHhcCCHHHHHHHHH-------HHH-hcCCCCc--------HHHHHHHHHH---------HHhcCCHHHHHHHHHHHH
Q 008265 229 REFGKKRDLVSALRAYD-------ASK-KHLSSPN--------MYICRTIIDV---------CGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 229 ~~~~~~g~~~~a~~~~~-------~m~-~~~~~~~--------~~~~~~ll~~---------~~~~g~~~~a~~~~~~m~ 283 (572)
-..+..+..++|.++++ ... .....+. ...|...+.. .+-.|++..|.+.++.|.
T Consensus 309 l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~ 388 (608)
T PF10345_consen 309 LHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMR 388 (608)
T ss_pred HHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 22223343335554444 444 1111111 1222222222 244588999999999887
Q ss_pred hCCC-CC-----CHHHHHHHHHH----hcCChHHHHHHHH--------HHHHcCCCCCHHHHHHH--HHHHHHcC--ChH
Q 008265 284 SQNV-TL-----NIYVFNSLMNV----NAHDLKFTLEVYK--------NMQKLGVMADMASYNIL--LKACCLAG--NTV 341 (572)
Q Consensus 284 ~~g~-~p-----~~~~~~~ll~~----~~~~~~~a~~~~~--------~m~~~~~~~~~~~~~~l--l~~~~~~g--~~~ 341 (572)
+..- .| ....+...+.+ ..|+.+.|+..|. .....+...+..++..+ +-.+...+ ..+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~ 468 (608)
T PF10345_consen 389 QLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDS 468 (608)
T ss_pred HHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchh
Confidence 5421 11 12233333333 3489999999997 44455555455444332 11222222 223
Q ss_pred H--HHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcccc---------HHHHHHHHHHHHHCCCCC-chhhHHHHHHHH
Q 008265 342 L--AQEIYGEVKHLEAKGVLKLDVFTYSTI-VKVFADAKW---------WQMALKVKEDMLSAGVTP-NTITWSSLINAC 408 (572)
Q Consensus 342 ~--a~~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~---------~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 408 (572)
+ ..++++.+....... ...+..++..+ +.++..... +.++++.. ..+.|..- -..+++.|-.-+
T Consensus 469 ~~~~~~l~~~i~p~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~--~~~~~n~~l~~~~L~lm~~~l 545 (608)
T PF10345_consen 469 ESELNELLEQIEPLCSNS-PNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMA--NNKLGNSQLLAILLNLMGHRL 545 (608)
T ss_pred hhHHHHHHHhcCccccCC-ccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHH--HHhhccchHHHHHHHHHHHHH
Confidence 3 677777665432111 12233344444 333332211 22333333 01211111 112233333333
Q ss_pred HHcCCHHHHHHHHHHHHH---cCCCCCHHHHH-----HHHHHHHHhCCHhHHHHHHHHhh
Q 008265 409 ANAGLVEQAMHLFEEMLQ---AGCEPNSQCCN-----ILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
. .|+..+..+....... +..+-....|. .+.+.+...|+.++|..+..+..
T Consensus 546 f-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 546 F-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred H-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3 5777765555544322 11112344553 34445777899999999887654
No 231
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.44 E-value=4.4 Score=38.00 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCC----hHHHHHHHHHHHHHHHhCCCC
Q 008265 291 IYVFNSLMNVNAHD----LKFTLEVYKNMQKLGVMADMASYNILLKACCL--AGN----TVLAQEIYGEVKHLEAKGVLK 360 (572)
Q Consensus 291 ~~~~~~ll~~~~~~----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~g~----~~~a~~~~~~~~~~~~~~~~~ 360 (572)
..++.+++.....+ +.+.+.+++.|.+.|.+-+..+|-+..-.... ..+ ...+..+|+.|++...-= ..
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL-Ts 138 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL-TS 138 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc-cC
Confidence 44555555554443 44566778888888888777766553333332 222 456778888888632111 23
Q ss_pred CCHHHHHHHHHHHHcccc----HHHHHHHHHHHHHCCCCCchh-hHHHHHHHHHHc-CC--HHHHHHHHHHHHHcCCCCC
Q 008265 361 LDVFTYSTIVKVFADAKW----WQMALKVKEDMLSAGVTPNTI-TWSSLINACANA-GL--VEQAMHLFEEMLQAGCEPN 432 (572)
Q Consensus 361 ~~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~-g~--~~~a~~~~~~m~~~~~~p~ 432 (572)
++..++.+++.. ..++ .+.++.+++.+.+.|+..+.. -+.+-+-++... .. +.++.++++.+.+.|+++.
T Consensus 139 ~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik 216 (297)
T PF13170_consen 139 PEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIK 216 (297)
T ss_pred ccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccc
Confidence 455566666544 3333 356777888888877765443 222222222221 11 4577888888888888887
Q ss_pred HHHHHHHHH
Q 008265 433 SQCCNILLQ 441 (572)
Q Consensus 433 ~~~~~~li~ 441 (572)
...|..+.-
T Consensus 217 ~~~yp~lGl 225 (297)
T PF13170_consen 217 YMHYPTLGL 225 (297)
T ss_pred cccccHHHH
Confidence 777665543
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.30 E-value=2.9 Score=41.68 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=77.2
Q ss_pred HHHHHhcCCHHHHHHHHH--HHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCh
Q 008265 228 VREFGKKRDLVSALRAYD--ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~--~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 305 (572)
.....-.|+++.+.++.. .+... -+....+.++..+-+.|..+.|+++-.+-..+ -=+...+|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~---i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r----------FeLAl~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPN---IPKDQGQSIARFLEKKGYPELALQFVTDPDHR----------FELALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH----------HHHHHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhccc---CChhHHHHHHHHHHHCCCHHHHHhhcCChHHH----------hHHHHhcCCH
Confidence 445556688888777765 22211 12456788888888899988888876554322 1111223444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHH
Q 008265 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (572)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (572)
+.|.++.++. .+...|..|.+...+.|+++-|++.|.+... |..|+--|.-.|+.+...++
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD-------------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------------HHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------------ccccHHHHHHhCCHHHHHHH
Confidence 4444433222 2455666666666666666666666654331 23344444555555555555
Q ss_pred HHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 008265 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (572)
Q Consensus 386 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 423 (572)
.+.....|- ++..+.++.-.|++++..+++.+
T Consensus 396 ~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 396 AKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 555444322 34445555555665555555443
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=3.7 Score=36.34 Aligned_cols=201 Identities=13% Similarity=0.106 Sum_probs=104.2
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhh-cCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVS-EGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
...|.....+|....++++|...+.+..+- .-+.+-|. ..+.++.|.-+.++|.+.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh----------------AAKayEqaamLake~~kl------- 87 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH----------------AAKAYEQAAMLAKELSKL------- 87 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH----------------HHHHHHHHHHHHHHHHHh-------
Confidence 566777888888889999988877766532 11111111 223344444444444442
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCc-----
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA----- 220 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~----- 220 (572)
+.....+-+++..+..+|..+-|-..+++.-+. .++-+++.|++++.+. ..+
T Consensus 88 --sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~m 148 (308)
T KOG1585|consen 88 --SEVVDLYEKASELYVECGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQM 148 (308)
T ss_pred --HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHH
Confidence 113333344444455556655555555443211 1122233333333221 111
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCH
Q 008265 221 -DILFCNFVREFGKKRDLVSALRAYDASKK----HLSSPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLNI 291 (572)
Q Consensus 221 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~p~~ 291 (572)
...+..+-+.+.+...+++|-..|.+-.. ..--++. ..|-..|-.|.-..++..|...++.--+.+ -.-+.
T Consensus 149 a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~ 228 (308)
T KOG1585|consen 149 AFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS 228 (308)
T ss_pred HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH
Confidence 13445556666666777666555443211 1111222 235555556666778888888888744432 23356
Q ss_pred HHHHHHHHHhc-CChHHHHHHHH
Q 008265 292 YVFNSLMNVNA-HDLKFTLEVYK 313 (572)
Q Consensus 292 ~~~~~ll~~~~-~~~~~a~~~~~ 313 (572)
.+...||.+|- |+.+++..++.
T Consensus 229 r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 229 RSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHhccCCHHHHHHHHc
Confidence 77888888876 67777665543
No 234
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.10 E-value=2.1 Score=35.63 Aligned_cols=122 Identities=9% Similarity=0.022 Sum_probs=64.8
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCch--------hHHHHHHHHHHhcC
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--------ILFCNFVREFGKKR 235 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~li~~~~~~g 235 (572)
.++..+..++|+.-|..+.+.|..--.+...........+.|+...|...|+.+..+. ..--.-.-.+...|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 3456789999999999998877543222223334445556666666666666542221 11111122334455
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
.++....-.+-+...+-+.-...-..|--+-.+.|++.+|.+.|..+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 66665555555444332222333334444445556666666666665543
No 235
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.97 E-value=5.9 Score=37.71 Aligned_cols=281 Identities=12% Similarity=0.049 Sum_probs=181.6
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHH--HHHhcCCChHHHHHhhhcCCCchhHHH----HHHHHHHhcCCHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIV--QLCVNKPDVNLAIRYACIVPRADILFC----NFVREFGKKRDLVSAL 241 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~ 241 (572)
.|+-..|.++-.+-.+. -..+......++ ++..-.|+++.|.+-|+.|..+..+-. .|.-..-+.|+.+-|.
T Consensus 97 AGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 67777777765543211 111222233343 344457999999999999988775433 3444456779999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHhc-----CChHHHHHHHH
Q 008265 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNI--YVFNSLMNVNA-----HDLKFTLEVYK 313 (572)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~--~~~~~ll~~~~-----~~~~~a~~~~~ 313 (572)
+.-+..-+.-.. -...+...+...+..|+|+.|+++.+.-+... +.++. ..-..|+.+.+ -+...|...-.
T Consensus 175 ~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 888877654222 24578899999999999999999998876542 34443 33445566544 25556666555
Q ss_pred HHHHcCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 314 NMQKLGVMADMAS-YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 314 ~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+..+ ..||..- --....++.+.|+..++-.+++.+-+ ..|....+...+ +.+.|+. ++.-++...+.
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK------~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L 321 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK------AEPHPDIALLYV--RARSGDT--ALDRLKRAKKL 321 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh------cCCChHHHHHHH--HhcCCCc--HHHHHHHHHHH
Confidence 5544 4555433 23345778899999999999999876 456666654433 4455542 22222221110
Q ss_pred -CCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCHhHHHHHHHHhhhcccc
Q 008265 393 -GVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV-EACQFDRAFRLFRSWTLSKTQ 465 (572)
Q Consensus 393 -g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~ 465 (572)
.++| +..+.-.+..+-...|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+-.+..-.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 1233 4466677778888889998888776666554 788888888877644 449999999888876654433
No 236
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.97 E-value=3.2 Score=34.61 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=86.9
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
+.+.|...+. ++..+..++|+..|..+...|... |.. -..........+.|+-..|+..|.++-.....|...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~--Ypv----LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~ 130 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGS--YPV----LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG 130 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCc--chH----HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh
Confidence 3566666554 677888999999999999887641 111 112223344668899999999999987775555443
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHH
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~ 229 (572)
.+..- +++.-.+.+.|.+++.....+.+...+-+.+. ..-..|.-
T Consensus 131 rd~AR----lraa~lLvD~gsy~dV~srvepLa~d~n~mR~-------------------------------sArEALgl 175 (221)
T COG4649 131 RDLAR----LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRH-------------------------------SAREALGL 175 (221)
T ss_pred hHHHH----HHHHHHHhccccHHHHHHHhhhccCCCChhHH-------------------------------HHHHHHhH
Confidence 22222 22223456678888887777766544322211 23344556
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 008265 230 EFGKKRDLVSALRAYDASKKH 250 (572)
Q Consensus 230 ~~~~~g~~~~a~~~~~~m~~~ 250 (572)
+..+.|++.+|.+.|..+...
T Consensus 176 Aa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhccchHHHHHHHHHHHcc
Confidence 666778888888888777654
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.90 E-value=3 Score=34.08 Aligned_cols=83 Identities=17% Similarity=0.093 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008265 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (572)
Q Consensus 261 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 339 (572)
.++..+.+.+.......+++.+...+ ..+...++.++..++. +.+..++.+.. ..+......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCHHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444444455555555555554443 1344444444444442 22233333321 1122233345556666666
Q ss_pred hHHHHHHHHHH
Q 008265 340 TVLAQEIYGEV 350 (572)
Q Consensus 340 ~~~a~~~~~~~ 350 (572)
++++..++..+
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 66666666544
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.89 E-value=1.8 Score=35.00 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=54.2
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~ 142 (572)
+...+-.-.....+.|++++|++.|+.+..+-+... + ...+...++.++.+.+++++|+..+++.++.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-y----a~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE-Y----AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc-c----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 345555556677789999999999999998754321 2 2566777889999999999999999999887
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.88 E-value=6.7 Score=39.73 Aligned_cols=156 Identities=13% Similarity=0.031 Sum_probs=104.8
Q ss_pred HhcCChHHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 300 VNAHDLKFTLEVYKNMQKL-GVMADM-----ASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (572)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~-~~~~~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 369 (572)
++.||-+.+++.+.+..+. ++.-.. ..|..++..++. ..+.+.|.+++..+.+ .-|+...|...
T Consensus 199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~------~yP~s~lfl~~ 272 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK------RYPNSALFLFF 272 (468)
T ss_pred CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH------hCCCcHHHHHH
Confidence 3558888898888877653 333211 124444444433 4567889999999987 35777766544
Q ss_pred H-HHHHccccHHHHHHHHHHHHHCCC---CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 008265 370 V-KVFADAKWWQMALKVKEDMLSAGV---TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CV 444 (572)
Q Consensus 370 i-~~~~~~g~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~ 444 (572)
- +.+...|++++|++.|+....... ......+--+..++....++++|.+.|..+.+.. .-+..+|.-+..+ +.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 3 456678999999999997653211 1233455667778888999999999999998754 3345555555444 44
Q ss_pred HhCCH-------hHHHHHHHHhhhc
Q 008265 445 EACQF-------DRAFRLFRSWTLS 462 (572)
Q Consensus 445 ~~g~~-------~~A~~~~~~m~~~ 462 (572)
..|+. ++|.++|.+....
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHHH
Confidence 56777 8888898887643
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=93.69 E-value=0.9 Score=37.67 Aligned_cols=89 Identities=11% Similarity=-0.051 Sum_probs=70.9
Q ss_pred HHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHh
Q 008265 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450 (572)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 450 (572)
.-+...|++++|..+|+-+...+.. +..-|..|..+|-..+++++|...|...-..+ .-|...+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 3456789999999999998877554 56667888888999999999999999876543 223333555677899999999
Q ss_pred HHHHHHHHhhh
Q 008265 451 RAFRLFRSWTL 461 (572)
Q Consensus 451 ~A~~~~~~m~~ 461 (572)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988775
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.64 E-value=3 Score=33.75 Aligned_cols=78 Identities=8% Similarity=0.039 Sum_probs=47.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 411 (572)
....+.|++++|.+.|+.+...-..| +-....--.|+.+|.+.+++++|...+++..+....--.+-|-..+.+++..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g--~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFG--EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34455677777777777776542222 2233455567777777788888777777777664332234455555555443
No 242
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.33 E-value=8.5 Score=37.51 Aligned_cols=157 Identities=12% Similarity=-0.023 Sum_probs=80.5
Q ss_pred HhhcCChhHHHHHHHHHHhhcC-ChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHH
Q 008265 81 LAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (572)
Q Consensus 81 ~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~ 159 (572)
+-+.++..+|.++|.++.+..- .| ..+..+.+...|....-..+.+.....+..+.+. .|... +-.++..+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~----f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~--~~~s~-~l~LF~~L~ 88 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSP----FLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ--FGKSA-YLPLFKALV 88 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcch----HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh--cCCch-HHHHHHHHH
Confidence 3456899999999999886532 22 2233344444433334445566666666666554 23221 333444443
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhC--CCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCH
Q 008265 160 NECQRLLDSGEVEMFVGLMEVLEEF--RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (572)
Q Consensus 160 ~~~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~ 237 (572)
. -+.+.++.|++.+..-... +..+.- .+.= +...-.+-..-+..++.+...|.+
T Consensus 89 ~-----Y~~k~~~kal~~ls~w~~~~~~~~~~~---Ld~n----------------i~~l~~df~l~~i~a~sLIe~g~f 144 (549)
T PF07079_consen 89 A-----YKQKEYRKALQALSVWKEQIKGTESPW---LDTN----------------IQQLFSDFFLDEIEAHSLIETGRF 144 (549)
T ss_pred H-----HHhhhHHHHHHHHHHHHhhhcccccch---hhhh----------------HHHHhhHHHHHHHHHHHHHhcCCc
Confidence 2 3578899998887765543 211110 0000 000000112233455666666777
Q ss_pred HHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHh
Q 008265 238 VSALRAYDASKKHLSS----PNMYICRTIIDVCGI 268 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~ 268 (572)
.++..++++|...-++ -+..+|+.++-.+++
T Consensus 145 ~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 145 SEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred chHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 7776666666544322 455666654444433
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=2.8 Score=40.04 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=87.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhH
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGV----------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 401 (572)
+.|.+.|++..|...|+.....-.... ...-..+++.+.-+|.+.+++.+|++.-....+.+. +|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHH
Confidence 445666777776666666443211000 112245677888889999999999999999888753 477777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHhCCH-hHHHHHHHHhhhc
Q 008265 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC-CNILLQACVEACQF-DRAFRLFRSWTLS 462 (572)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~-~~A~~~~~~m~~~ 462 (572)
----.+|...|+++.|+..|+.+++. .|+... -+.|+..-.+.... +...++|..|-..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77788999999999999999999986 555444 44454444444443 4557888888653
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=2.3 Score=40.64 Aligned_cols=122 Identities=14% Similarity=0.062 Sum_probs=89.9
Q ss_pred HHHHccccHHHHHHHHHHHHHC-----CC---------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008265 371 KVFADAKWWQMALKVKEDMLSA-----GV---------TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (572)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~-----g~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 436 (572)
+.|.+.|++..|...|+..... +. ..-..++..+.-+|.+.+++.+|++.-+..+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4577788888887777765432 11 1122356778888999999999999999998876 6677666
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHH
Q 008265 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516 (572)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 516 (572)
--=-.+|...|+++.|+..|+++.+ +.|+..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k-------------------------------------------------~~P~Nk 325 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK-------------------------------------------------LEPSNK 325 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH-------------------------------------------------hCCCcH
Confidence 6667889999999999999999886 467666
Q ss_pred HHHHHHHHHhhc----HHHHHHHHHHHHhC
Q 008265 517 TYNILMKACCTD----YYRVKALMNEMRTV 542 (572)
Q Consensus 517 ~~~~ll~a~~~~----~~~a~~~~~~m~~~ 542 (572)
.-+.=|..|.+. -+...++|..|...
T Consensus 326 a~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 326 AARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666666542 35667788888753
No 245
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.93 E-value=1.3 Score=40.64 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.++..++..+...|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345566666777777777777777777654 44667777777777777777777777777664
No 246
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.80 E-value=15 Score=38.84 Aligned_cols=179 Identities=12% Similarity=0.070 Sum_probs=119.6
Q ss_pred HHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhh
Q 008265 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (572)
Q Consensus 74 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 153 (572)
...-|..+.+...++.|+.+-+. .+..++. ..++......-+.+.|++++|...|-+-... +.|..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~-----~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~----- 402 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDT-----LAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE----- 402 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----
Confidence 34445555666666666655442 2333321 1333444455567889999999988765543 34422
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCch--hHHHHHHHHH
Q 008265 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--ILFCNFVREF 231 (572)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~li~~~ 231 (572)
. + ..+.+..+..+-..+++.+.+.|+.-.+ ....|+..|.+.++.+.-.++.+..+... .-....+..+
T Consensus 403 V----i---~kfLdaq~IknLt~YLe~L~~~gla~~d--httlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Il 473 (933)
T KOG2114|consen 403 V----I---KKFLDAQRIKNLTSYLEALHKKGLANSD--HTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEIL 473 (933)
T ss_pred H----H---HHhcCHHHHHHHHHHHHHHHHcccccch--hHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHH
Confidence 1 1 2345577888888999999999886554 45679999999999999999888877332 2366788888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 232 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
.+.+-.++|..+-..... .......+ +-..|++++|++.+..|.
T Consensus 474 r~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 474 RKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 888888888877665443 33333444 346788999999988774
No 247
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.72 E-value=4.1 Score=32.26 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=47.8
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
+.......+..+...|+-++-.+++.++.+.+ .++......+..||.+.|+..++.+++.+.=+.|.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44556777888888899999889988887644 77888888999999999999999999988776664
No 248
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.62 E-value=4.3 Score=32.18 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 008265 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313 (572)
Q Consensus 234 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~ 313 (572)
.|.+++..+++.+.... .+..-||.+|.-....-+-+-..++++..-+- .|. ..++++.....-+-
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi--------s~C~NlKrVi~C~~ 80 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI--------SKCGNLKRVIECYA 80 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G--------GG-S-THHHHHHHH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc--------hhhcchHHHHHHHH
Confidence 36666666666666553 34555666665555555555555555544332 110 01233333333332
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC
Q 008265 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (572)
.+- .+...+...+....+.|+-+.-.+++.++.+ . -.++....-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 81 ~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~k---n--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 81 KRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKK---N--EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH----------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred Hhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhh---c--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 221 2344555666666777777766666666653 1 14556666666677777777777777777776666
Q ss_pred CC
Q 008265 394 VT 395 (572)
Q Consensus 394 ~~ 395 (572)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 53
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.50 E-value=5 Score=32.72 Aligned_cols=110 Identities=11% Similarity=0.118 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHH
Q 008265 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407 (572)
Q Consensus 328 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 407 (572)
..++..+.+.+........++.+.. .+ ..+...++.++..|++.+ ..+.++.+.. ..+......++..
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~---~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALK---LN--SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHc---cC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 4566666667777777777777664 22 245567777777777653 3344444442 1244555667777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCHhHHHHHHHH
Q 008265 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-CQFDRAFRLFRS 458 (572)
Q Consensus 408 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~ 458 (572)
|.+.+.++++..++..+.. +...+..+.+. ++.+.|.+++.+
T Consensus 79 c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 7777777777777766532 22223333333 677777776653
No 250
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.45 E-value=20 Score=39.54 Aligned_cols=113 Identities=15% Similarity=0.059 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHhc------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC
Q 008265 288 TLNIYVFNSLMNVNA------HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (572)
Q Consensus 288 ~p~~~~~~~ll~~~~------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 361 (572)
.|+...+..+..+|+ ..+++|--.|...-+ ..-.+.+|..+|+|++|..+-.++.. .-
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~-------~~ 995 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE-------GK 995 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC-------CH
Confidence 567777776666554 245555555544332 22346778888888888888776652 12
Q ss_pred CHHH--HHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 362 DVFT--YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 362 ~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
+... --.|+.-+...++.-+|-++..+.... ..-.+..|++...+++|.++-..-
T Consensus 996 de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 996 DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 2222 255667777788887777777776542 222344455556677776665544
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.95 E-value=5.3 Score=37.14 Aligned_cols=152 Identities=10% Similarity=0.038 Sum_probs=91.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHh----cCChHHH
Q 008265 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNVN----AHDLKFT 308 (572)
Q Consensus 234 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~----~~~~~~a 308 (572)
.|+..+|...++++.+. .+.|...++-.=++|.-.|+.+.-...++++... +-.....+|..=|.++ +|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 46777777777777764 4557777777778888888888888888777644 3222334444434443 2677888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Q 008265 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (572)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (572)
.+.-++..+.+. -|.-.-.++.+.+--.|++.++.++..+-...-+.+.... ..-|-...-.+...+.++.|+++|+.
T Consensus 195 Ek~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mla-sHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLA-SHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHH-hhhhHHHHHhhhcccchhHHHHHHHH
Confidence 877777766542 2555666677777778888888877655433111110001 11122222234455788888888874
No 252
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.87 E-value=6.9 Score=32.88 Aligned_cols=133 Identities=11% Similarity=0.037 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 008265 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVM 321 (572)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~ 321 (572)
+.+..+.+.++.|+...|..+++.+.+.|++... ..+...++-+|.......+-...+....+.++--+|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHH---
Confidence 3455566678888888888899988888876543 444555566666655555544444444444443344331
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
=...+..++..+...|++-+|.++.+.... .+......++.+..+.++..--..+++-..
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~~~~--------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQYHK--------VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC--------cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 011355566677777777777777665421 122222344555555555444444443333
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.79 E-value=2.8 Score=37.92 Aligned_cols=99 Identities=11% Similarity=0.085 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCC-CC-chhhHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TP-NTITWSS 403 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ 403 (572)
.|+..+.. .+.|++.+|...|....+.-..+...| ..+--|..++...|+++.|..+|..+.+.-. .| -...+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~--nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTP--NAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccc--hhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45555443 345667777777777765332222222 2344466677777777777777777665411 11 1134555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 404 LINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
|..+..+.|+.++|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 566666777777777777777654
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.67 E-value=8.7 Score=35.82 Aligned_cols=153 Identities=5% Similarity=-0.058 Sum_probs=87.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCChH
Q 008265 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSL--MNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLAGNTV 341 (572)
Q Consensus 267 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~ 341 (572)
-..|+..+|-..++++.+. .+-|...++.. ...|.|+.+.-...++++... +++...+.-....-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3457777777777777765 23344444333 333557777777777776542 22222223333444555788888
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCC---CchhhHHHHHHHHHHcCCHHHHH
Q 008265 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT---PNTITWSSLINACANAGLVEQAM 418 (572)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~ 418 (572)
+|++.-++..++ -+.|.-.-.+....+--.|++.++.+.+.+-...=-. .-..-|-...-.+...+.++.|+
T Consensus 193 dAEk~A~ralqi-----N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 193 DAEKQADRALQI-----NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hHHHHHHhhccC-----CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 888888777763 1345555566666666778888888877664432000 00011222233345557888888
Q ss_pred HHHHHHH
Q 008265 419 HLFEEML 425 (572)
Q Consensus 419 ~~~~~m~ 425 (572)
++|+.-.
T Consensus 268 eIyD~ei 274 (491)
T KOG2610|consen 268 EIYDREI 274 (491)
T ss_pred HHHHHHH
Confidence 8887543
No 255
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.64 E-value=14 Score=35.80 Aligned_cols=204 Identities=15% Similarity=0.079 Sum_probs=101.0
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHH
Q 008265 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLA 210 (572)
Q Consensus 131 ~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 210 (572)
+..+.+..|.++=-.|... .-.+++.....+.+..+++..+++++.|... |.....
T Consensus 121 ~l~~~L~~i~~rLd~~~~l----s~div~~lllSyRdiqdydamI~Lve~l~~~---p~~~~~----------------- 176 (374)
T PF13281_consen 121 ELAKELRRIRQRLDDPELL----SPDIVINLLLSYRDIQDYDAMIKLVETLEAL---PTCDVA----------------- 176 (374)
T ss_pred HHHHHHHHHHHhhCCHhhc----ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc---Cccchh-----------------
Confidence 4444555555542233333 2223333334566678999999999988653 111010
Q ss_pred HHhhhcCCCchhHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008265 211 IRYACIVPRADILFCNFVREFGK---KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (572)
Q Consensus 211 ~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 287 (572)
....+-....-++-+ .|+.++|++++..+......++..+|..+.+.|-.. ....-
T Consensus 177 --------~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~-------------~~~s~ 235 (374)
T PF13281_consen 177 --------NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL-------------FLESN 235 (374)
T ss_pred --------cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-------------HHHcC
Confidence 011122223334444 789999999998866665667778887777655322 11100
Q ss_pred CCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHH-HHHhCCC--C
Q 008265 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT----VLAQEIYGEVKH-LEAKGVL--K 360 (572)
Q Consensus 288 ~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~----~~a~~~~~~~~~-~~~~~~~--~ 360 (572)
.-|... .++|...|.+.-+. .||...--.++..+.-.|.. .+..++--.+.. .++.|.. .
T Consensus 236 ~~d~~~-----------ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 236 FTDRES-----------LDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred ccchHH-----------HHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 001111 34444444443332 23332222222222222221 111222111110 1112222 2
Q ss_pred CCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.+--.+.+++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34446677888888899999999999998865
No 256
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=91.56 E-value=7.8 Score=32.87 Aligned_cols=98 Identities=9% Similarity=0.113 Sum_probs=48.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcC---CCCCHHHH
Q 008265 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLG---VMADMASY 327 (572)
Q Consensus 253 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~---~~~~~~~~ 327 (572)
.|+...--.+..+..+.|+..+|...|++...--+.-|....-.+-++.- ++.-.+..+++.+.+.+ -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 35555556666777777777777777777665333333333333333321 34444444444444322 11221 2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 328 NILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 328 ~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
-.+...+...|+..+|+..|+....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2233444445555555555555443
No 257
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.31 E-value=2.8 Score=38.49 Aligned_cols=77 Identities=9% Similarity=0.190 Sum_probs=47.0
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCCNIL 439 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 439 (572)
++..++..+...|+++.+.+.++++...... +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4555566666666666666666666655322 555666666666666666666666665543 5677776665555
Q ss_pred HHH
Q 008265 440 LQA 442 (572)
Q Consensus 440 i~~ 442 (572)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.27 E-value=20 Score=37.06 Aligned_cols=56 Identities=5% Similarity=-0.142 Sum_probs=40.4
Q ss_pred CcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (572)
Q Consensus 188 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 247 (572)
|.+....-.+.+++...|..++|.+.|-+.... ...+..|...++|.+|.++-...
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccCc----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 555566778899999999999998876554222 24567778888888888776543
No 259
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.03 E-value=6.2 Score=32.72 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC
Q 008265 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (572)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 184 (572)
+++.++.....-.+.++.+++..+++-+.-.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL 39 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL 39 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Confidence 4455555544445567888888888877653
No 260
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.98 E-value=2.5 Score=36.16 Aligned_cols=64 Identities=25% Similarity=0.422 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
..+..+...|.+.|+.++|.+.|.++.+....+. ...+-.+|+...-.|++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5677889999999999999999999988754443 346778888888899999988888776643
No 261
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.87 E-value=3.8 Score=37.70 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=73.2
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHH
Q 008265 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMAS 326 (572)
Q Consensus 251 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~~~~~~~~~ 326 (572)
|......+...++..-....+.+.+...+-+++... ..|+... .++++-+. -++++++.++..=++.|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 444455555666665566677888888888887641 2222222 22333322 367788888888889999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKHL 353 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 353 (572)
++.+|+.+.+.+++.+|.++.-.|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999988887754
No 262
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.76 E-value=30 Score=38.26 Aligned_cols=116 Identities=14% Similarity=0.168 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHH----HHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC
Q 008265 321 MADMASYNILLKAC----CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (572)
Q Consensus 321 ~~~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 396 (572)
.|+...+..+..+| .....+++|.-+|+..-++ .-.+.+|..+|+|.+|+.+..++... .
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-------------ekAl~a~~~~~dWr~~l~~a~ql~~~---~ 995 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-------------EKALKAYKECGDWREALSLAAQLSEG---K 995 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------------HHHHHHHHHhccHHHHHHHHHhhcCC---H
Confidence 45555555444443 3456667776666654331 12357778888888888888877532 2
Q ss_pred chhh--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 397 NTIT--WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 397 ~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
|... -..|+.-+...++.-+|-++..+.... ..-.+..+++...|++|.++-..-.
T Consensus 996 de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 996 DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 3322 256778888888888888888877643 2334456677778888888776554
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.68 E-value=6.3 Score=31.17 Aligned_cols=92 Identities=14% Similarity=-0.006 Sum_probs=56.4
Q ss_pred HHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHhCC
Q 008265 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC---CNILLQACVEACQ 448 (572)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~ 448 (572)
+.+..|+++.|++.|.+....-. -....||.-.+++.-.|+.++|++=+++..+..-.-+... |..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 45566777777777777665422 2456677777777777777777777777665321222222 2222233556777
Q ss_pred HhHHHHHHHHhhhccc
Q 008265 449 FDRAFRLFRSWTLSKT 464 (572)
Q Consensus 449 ~~~A~~~~~~m~~~~~ 464 (572)
.+.|..=|+..-+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 7888777777666553
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=12 Score=34.34 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCC
Q 008265 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (572)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 218 (572)
...|++.+|..+|....+.. +.+......+...|...|+.+.|..++..+|
T Consensus 145 ~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555544431 2222233334444444444444444444443
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.55 E-value=13 Score=33.53 Aligned_cols=71 Identities=11% Similarity=-0.021 Sum_probs=45.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 230 EFGKKRDLVSALRAYDASKKHL--SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (572)
Q Consensus 230 ~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 300 (572)
.-.+.|++++|.+.|+.+..+- -+-...+.-.++.++-+.+++++|...+++....-..-...-|...|.+
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 3446688888888888887552 1223456667777888888888888888887765222222334444443
No 266
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.40 E-value=4.8 Score=32.73 Aligned_cols=64 Identities=13% Similarity=-0.027 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC
Q 008265 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (572)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 219 (572)
..+.++.....-...++.+++..+++.|.-.. |.....-..-.-.+...|++++|.++|+.+..
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 44444444444444688888888888876543 33322211122233344445555444444433
No 267
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.26 E-value=7.8 Score=30.67 Aligned_cols=91 Identities=19% Similarity=0.057 Sum_probs=55.6
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhh---HHHHHHHHH
Q 008265 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT---WSSLINACA 409 (572)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~ 409 (572)
+.+..|+++.|++.|.+...+ .+-....||.-..++--.|+.++|++=+++..+..-..+... |.--...|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 456677777777777777653 234556777777777777777777777776655421112211 222222355
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 008265 410 NAGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~ 428 (572)
..|+-+.|..=|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 5677777777777666555
No 268
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.14 E-value=10 Score=31.86 Aligned_cols=135 Identities=13% Similarity=0.190 Sum_probs=86.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccc--cHHHHHHHH
Q 008265 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK--WWQMALKVK 386 (572)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~ 386 (572)
.+.++.+.+.++.|+...+..+++.+.+.|++.....++.- + +-+|.......+-.+.... -..-|++++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-------~-Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-------H-VIPDSKPLACQLLSLGNQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-------c-ccCCcHHHHHHHHHhHccChHHHHHHHHHH
Confidence 45667777889999999999999999999998766665542 2 3344443333333332211 133445555
Q ss_pred HHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 387 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.++.. .+..++..+...|++-+|.++.+..... +......++++-.+.++...=..+|+-..+.+
T Consensus 86 kRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 86 KRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 55442 3567788889999999999998876432 12223556777777777666556655554443
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.42 E-value=16 Score=33.58 Aligned_cols=154 Identities=13% Similarity=0.093 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 289 LNIYVFNSLMNV-NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (572)
Q Consensus 289 p~~~~~~~ll~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (572)
+....+...... -.++..+|..+|+........ +....-.+..+|...|+.+.|..++..+.... -........
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~----~~~~~~~l~ 207 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA----QDKAAHGLQ 207 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc----hhhHHHHHH
Confidence 334444443333 336777788877777665433 34555567777788888888888887765311 001111111
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHCCCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHH
Q 008265 368 TIVKVFADAKWWQMALKVKEDMLSAGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQA--GCEPNSQCCNILLQACV 444 (572)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~ 444 (572)
+-|..+.+.....+...+-..... .| |...-..+...+...|+.++|.+.+-.+.++ | .-|...-..++..+.
T Consensus 208 a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~-~~d~~~Rk~lle~f~ 283 (304)
T COG3118 208 AQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG-FEDGEARKTLLELFE 283 (304)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-ccCcHHHHHHHHHHH
Confidence 223333333333333334334333 34 4555556677777778887777766665543 3 224445556666655
Q ss_pred HhCCHhH
Q 008265 445 EACQFDR 451 (572)
Q Consensus 445 ~~g~~~~ 451 (572)
-.|..+-
T Consensus 284 ~~g~~Dp 290 (304)
T COG3118 284 AFGPADP 290 (304)
T ss_pred hcCCCCH
Confidence 5554433
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.37 E-value=6.1 Score=33.82 Aligned_cols=102 Identities=17% Similarity=0.029 Sum_probs=70.8
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...+..+..-|++.|+.+.|.+.|..+...-..+.+ ..+++..+++.....+++..+...+.+....--.+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~-----~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~- 109 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH-----KIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW- 109 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH-
Confidence 467889999999999999999999999887555442 36778889999999999999988887776652222222
Q ss_pred hhhhhHHHHHHHHHH--hhhhhHHHHHHHHHHH
Q 008265 151 DGSGFKLLKNECQRL--LDSGEVEMFVGLMEVL 181 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~--~~~g~~~~a~~~~~~~ 181 (572)
....-++++.++ ...+++..|-++|-+.
T Consensus 110 ---~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 110 ---ERRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred ---HHHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 111112222222 2357788887777654
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.00 E-value=16 Score=32.31 Aligned_cols=198 Identities=16% Similarity=0.071 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH-HH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSL-MN 299 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l-l~ 299 (572)
.+......+...+++..+...+...... ........+......+...+++..+...+.........+ ....+... +.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3444455555555555555555554431 122333444455555555555666666666655442222 11222222 22
Q ss_pred HhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcc
Q 008265 300 VNAHDLKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADA 376 (572)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 376 (572)
...++.+.+...+.+...... ......+......+...++.+.+...+...... ... ....+..+...+...
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-----NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-----CcccchHHHHHhhHHHHHc
Confidence 333555555555555533111 012222333333355566666666666666542 112 244555555556666
Q ss_pred ccHHHHHHHHHHHHHCCCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 377 KWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
++++.+...+...... .|+ ...+..+...+...+..+++...+.+....
T Consensus 216 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666665554 222 222333333333445556666555555543
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.90 E-value=1.5 Score=27.17 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=8.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 008265 330 LLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
+..+|...|++++|+++|+++.
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.78 E-value=15 Score=32.01 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
.+|--+.+.+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45666677777777777777777766654
No 274
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.74 E-value=2.2 Score=26.47 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 401 WSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
|..+...|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555555555555555555443
No 275
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.71 E-value=27 Score=34.77 Aligned_cols=159 Identities=11% Similarity=0.055 Sum_probs=110.0
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcC---CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (572)
...-+++..+..+....-...+-.+| .++...+-.++..|... .-+.-..+|+++.+..+. |+..-..+.. +..
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~-~yE 143 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD-KYE 143 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH-HHH
Confidence 44556777777776666655554443 34457788888999888 667788889988876543 3333344444 444
Q ss_pred cCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCChHH
Q 008265 269 CGDYMKSRAIYEDLRSQNVT-----LNIYVFNSLMNVNAHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVL 342 (572)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~-----p~~~~~~~ll~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~ 342 (572)
.++.+.+..+|.....+=++ .-...|.-+..-...+.+..+.+..++.. .|...-...+.-+-.-|....++.+
T Consensus 144 kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e 223 (711)
T COG1747 144 KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE 223 (711)
T ss_pred HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence 58888898888888755322 11346777776666788888888888865 4555556667777788889999999
Q ss_pred HHHHHHHHHHH
Q 008265 343 AQEIYGEVKHL 353 (572)
Q Consensus 343 a~~~~~~~~~~ 353 (572)
|++++..+.++
T Consensus 224 ai~Ilk~il~~ 234 (711)
T COG1747 224 AIRILKHILEH 234 (711)
T ss_pred HHHHHHHHhhh
Confidence 99999977764
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.65 E-value=13 Score=30.91 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=65.1
Q ss_pred HHHHHHHHHH---HHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccccHHHHHHHHHHHHHCCCCCchh
Q 008265 324 MASYNILLKA---CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY-STIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399 (572)
Q Consensus 324 ~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 399 (572)
..+.+.|+.. -.+.++.+++..++..+.-+ .|..... ..-...+...|+|++|+++|+++.+.+ |...
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p 78 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFP 78 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCh
Confidence 3444455443 34678899999999999874 4554322 222334668899999999999987763 3333
Q ss_pred hHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 008265 400 TWSSLINACANAGLVEQAMHL-FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (572)
.-..|+..|....+ +..++. -+++.+.+-.|+. ..++..+....+...|..
T Consensus 79 ~~kALlA~CL~~~~-D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 79 YAKALLALCLYALG-DPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 23334443333222 233333 3345555433332 234555555555544444
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.57 E-value=1.2 Score=26.27 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 008265 224 FCNFVREFGKKRDLVSALRAYDA 246 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~ 246 (572)
++.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 278
>PRK11906 transcriptional regulator; Provisional
Probab=88.28 E-value=28 Score=34.43 Aligned_cols=114 Identities=11% Similarity=0.089 Sum_probs=78.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhcCChHHHHHHH
Q 008265 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNAHDLKFTLEVY 312 (572)
Q Consensus 234 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~a~~~~ 312 (572)
..+..+|.+.-+...+.+. -|......+-.+..-.|+++.|...|++....+ -.++...|..++.+++|+.++|.+.+
T Consensus 317 ~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 317 ELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456677777777777643 367777777777788888999999999988763 12345678888889999999999999
Q ss_pred HHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008265 313 KNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGE 349 (572)
Q Consensus 313 ~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 349 (572)
++..+..+. .........++.|+..+ .++++++|-+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 997664322 22233344455666544 6777777644
No 279
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.71 E-value=12 Score=37.96 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
|+++.|.++..+.. +..-|..|.++....|++..|.+.|..... |..|+-.+...|+-+..
T Consensus 651 grl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 651 GRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD-------------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred CcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc-------------hhhhhhhhhhcCChhHH
Confidence 45555555444432 455677777888888888888777765542 34555566666766655
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
..+-....+.|.. |...-+|...|+++++.+++..-
T Consensus 712 ~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 5555555555432 44455666778888777776544
No 280
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.48 E-value=21 Score=31.93 Aligned_cols=121 Identities=12% Similarity=0.033 Sum_probs=68.0
Q ss_pred HcCChHHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC----CCCCch-hhHHHHHHHHH
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKG-VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVTPNT-ITWSSLINACA 409 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~ 409 (572)
+.-++++|+++|.+....-..+ ...--...+..+-+.+.+...+++|-..+.+-... .-.++. ..|-..|-.+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 3445666777766655432221 01111224455556667777777665544432211 111222 23455555666
Q ss_pred HcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 008265 410 NAGLVEQAMHLFEEMLQAG---CEPNSQCCNILLQACVEACQFDRAFRLFR 457 (572)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (572)
-..++..|..+++.-.+.+ -.-+..+...|+.+| ..|+.+++.+++.
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 6778889999988854422 133567788888887 5788888777653
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.20 E-value=1.6 Score=25.65 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 258 ICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 258 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
+|+.|-..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788999999999999999999854
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.01 E-value=23 Score=35.28 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=12.5
Q ss_pred cCChHHHHHHHHHHHHHH
Q 008265 337 AGNTVLAQEIYGEVKHLE 354 (572)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~ 354 (572)
+....+++++|++..+..
T Consensus 213 A~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 213 ASTIVEAEELLRQAVKAG 230 (539)
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 445677888888777644
No 283
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.01 E-value=31 Score=32.46 Aligned_cols=130 Identities=14% Similarity=0.241 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hc--C----ChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCh
Q 008265 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NA--H----DLKFTLEVYKNMQKLGV---MADMASYNILLKACCLAGNT 340 (572)
Q Consensus 272 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~--~----~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~g~~ 340 (572)
+++.+.+++.|.+.|+.-+.++|-+.... .. . ....+..+|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566777778888877777666553332 21 1 35667888888887653 3444556555544 33333
Q ss_pred ----HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-c--cHHHHHHHHHHHHHCCCCCchhhHHHHHH
Q 008265 341 ----VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA-K--WWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (572)
Q Consensus 341 ----~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (572)
+.++..|+.+.. .|..+-|..-+.+-+-++... . ...++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~---~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLAD---AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHH---hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 456667777665 343333443333333333322 1 14578888999999998887777665443
No 284
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.79 E-value=33 Score=32.61 Aligned_cols=136 Identities=14% Similarity=0.052 Sum_probs=61.5
Q ss_pred hHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc-CCCCcchh
Q 008265 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL-GVAPLELF 150 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~ 150 (572)
.+|..+..+.++.|++.+++..--.-++.-.+. -.+..-..++.++.+++-+.-++.+++.+-+.-... |..|...
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~- 120 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQL- 120 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc-
Confidence 445555566666666665543322222111110 112222455555666555555666666555443332 3233211
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCc----ccchHHHHHHHHhcCCChHHHHHh
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVK----ELDEEFRIVQLCVNKPDVNLAIRY 213 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~ 213 (572)
-....-++-.+..+ .+.++++++.|+...+.--... +...+-.|...|.+..++++|.-+
T Consensus 121 ~gq~~l~~~~Ahlg---ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f 184 (518)
T KOG1941|consen 121 GGQVSLSMGNAHLG---LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFF 184 (518)
T ss_pred cchhhhhHHHHhhh---HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhh
Confidence 11111222233333 4778888888877654322211 122344555555555565555443
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.67 E-value=0.69 Score=26.87 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=27.0
Q ss_pred hhhcccCCchhhhHHHHHHHhHhhcCChhHHHH
Q 008265 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAM 92 (572)
Q Consensus 60 ~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~ 92 (572)
.+.++.+|+. ..+|+.+...+...|++++|++
T Consensus 3 ~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 3 KKAIELNPNN-AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhcC
Confidence 3566777887 8999999999999999999863
No 286
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.29 E-value=19 Score=29.43 Aligned_cols=105 Identities=11% Similarity=-0.005 Sum_probs=61.6
Q ss_pred hhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHH
Q 008265 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (572)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 198 (572)
++..-...++++++..+++.|.-. .|+.. -..++..++. ...|+|++|+.+|+++.+.+... .+..-+
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvL--rP~~~-e~d~~dg~l~-----i~rg~w~eA~rvlr~l~~~~~~~----p~~kAL 83 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVL--RPNLK-ELDMFDGWLL-----IARGNYDEAARILRELLSSAGAP----PYGKAL 83 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--CCCcc-ccchhHHHHH-----HHcCCHHHHHHHHHhhhccCCCc----hHHHHH
Confidence 344445588999999999998765 55543 2235555543 34799999999999998764221 122222
Q ss_pred HHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASK 248 (572)
Q Consensus 199 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 248 (572)
.++| ..-..+..|..........+...++..+.+.+.
T Consensus 84 ~A~C-------------L~al~Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 84 LALC-------------LNAKGDAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHH-------------HHhcCChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 2222 111112345555555555666666666666555
No 287
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.84 E-value=6.4 Score=39.71 Aligned_cols=153 Identities=10% Similarity=0.029 Sum_probs=95.9
Q ss_pred HhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHH
Q 008265 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN 160 (572)
Q Consensus 81 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~ 160 (572)
+.-.|+++.|..++..+.+. ....+..-+-++|..++|+++- ..|+. -|.+.++
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~--------------~rt~va~Fle~~g~~e~AL~~s-------~D~d~-----rFelal~ 649 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKE--------------IRTKVAHFLESQGMKEQALELS-------TDPDQ-----RFELALK 649 (794)
T ss_pred HhhhccccccccccccCchh--------------hhhhHHhHhhhccchHhhhhcC-------CChhh-----hhhhhhh
Confidence 34467777777766555422 1222333444666666665543 22332 4555543
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHH
Q 008265 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSA 240 (572)
Q Consensus 161 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 240 (572)
.|+++.|.++..+. ++..-|..|.++....+++..|.+.|... .-|..|+-.+...|+-+..
T Consensus 650 -------lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a----~d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 650 -------LGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRA----RDLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred -------cCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhh----cchhhhhhhhhhcCChhHH
Confidence 69999998876654 33456888888888888888888888664 3466677777777777765
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 241 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
..+-....+.|. .|...-+|...|+++++.+++.+-.
T Consensus 712 ~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 712 AVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhcC
Confidence 555555555442 2334445667788888888776553
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.56 E-value=1.4 Score=25.61 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=15.0
Q ss_pred CCcccchHHHHHHHHhcCCChHHHH
Q 008265 187 PVKELDEEFRIVQLCVNKPDVNLAI 211 (572)
Q Consensus 187 ~~~~~~~~~~ll~~~~~~g~~~~a~ 211 (572)
.|++...|+.+...|...|+.++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4666666666666666666665553
No 289
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.01 E-value=43 Score=32.43 Aligned_cols=160 Identities=13% Similarity=0.104 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL--SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN---------VTLN 290 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---------~~p~ 290 (572)
..+.-+...|..+|+++.|++.|.+.+... .+-.+..|-.+|..-...|+|.++..+..+..+.- +.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456668888999999999999998865542 12234566667777778899888888877776541 2222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCChHHHHHH-----HHHHHHHHHhCCC
Q 008265 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLG------VMADMASYNILLKACCLAGNTVLAQEI-----YGEVKHLEAKGVL 359 (572)
Q Consensus 291 ~~~~~~ll~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~-----~~~~~~~~~~~~~ 359 (572)
...+..+.....+++..|...|-...... +.|...+....+.+++-.++-+--..+ |+...
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fl-------- 302 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFL-------- 302 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHH--------
Confidence 23333333333345555544443222111 223333333334444433333222222 22222
Q ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Q 008265 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (572)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (572)
......+..+..-| .+++...++++++++.
T Consensus 303 el~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 303 ELEPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred hcChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 22334444444444 3567888888888764
No 290
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.00 E-value=33 Score=31.09 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=46.6
Q ss_pred hcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc
Q 008265 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 83 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~ 142 (572)
+...+++|+.-|+...+...+-..|. +.++-.++..+.+.+++++..+.|.+|...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWG----FKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWG----FKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhH----HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34578999999999998866666676 778889999999999999999999888654
No 291
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.57 E-value=4 Score=37.51 Aligned_cols=124 Identities=13% Similarity=0.204 Sum_probs=65.9
Q ss_pred HHHHHHccccHHHHHHHHHHHHHC----------CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHH
Q 008265 369 IVKVFADAKWWQMALKVKEDMLSA----------GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA---GCEPNSQC 435 (572)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~----------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~ 435 (572)
|.++|.....|+.-......+... |......+...++..-....++++++.++-.++.. -..|+...
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~ 104 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI 104 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH
Confidence 445566555555433333233222 33445555666666666667778887777777642 12222211
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCH
Q 008265 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515 (572)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 515 (572)
+ .+++-| -.-+.++++-++..=. ..|+-||-
T Consensus 105 ~-~~irll-lky~pq~~i~~l~npI-----------------------------------------------qYGiF~dq 135 (418)
T KOG4570|consen 105 H-TWIRLL-LKYDPQKAIYTLVNPI-----------------------------------------------QYGIFPDQ 135 (418)
T ss_pred H-HHHHHH-HccChHHHHHHHhCcc-----------------------------------------------hhccccch
Confidence 1 122222 2234455555544322 33578888
Q ss_pred HHHHHHHHHHhh--cHHHHHHHHHHHHh
Q 008265 516 TTYNILMKACCT--DYYRVKALMNEMRT 541 (572)
Q Consensus 516 ~~~~~ll~a~~~--~~~~a~~~~~~m~~ 541 (572)
++++.+|+.+.+ +..+|..+.-.|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 888888888887 45555555544443
No 292
>PRK11906 transcriptional regulator; Provisional
Probab=83.54 E-value=50 Score=32.82 Aligned_cols=129 Identities=12% Similarity=0.077 Sum_probs=72.2
Q ss_pred HHH--HHHHHHHHhcC-----CHHHHHHHHHHHH-hCCCCCCH-HHHHHHHHH-----hcC------ChHHHHHHHHHHH
Q 008265 257 YIC--RTIIDVCGICG-----DYMKSRAIYEDLR-SQNVTLNI-YVFNSLMNV-----NAH------DLKFTLEVYKNMQ 316 (572)
Q Consensus 257 ~~~--~~ll~~~~~~g-----~~~~a~~~~~~m~-~~g~~p~~-~~~~~ll~~-----~~~------~~~~a~~~~~~m~ 316 (572)
..| ...+++..... ..+.|+.+|.+.. .+.+.|+- ..|..+-.+ ..| +..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 55566554422 3567888888877 22345552 223222222 111 2345556666666
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 317 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+.+.. |......+..+....++++.|..+|++... +.||.. +|.......+-.|+.++|.+.+++..+.
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 65533 666666666666666777777777777776 345433 4444444445567777777777775544
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.37 E-value=13 Score=27.68 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
++.+-++.+......|++....+.+++|-+.+|+..|.++|+-++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555556666778888888888888888888888888887764
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.36 E-value=12 Score=27.91 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
++.+-++.+....+-|+..+..+.++||-+.+++..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444445555555566666666666666666666666666666554
No 295
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.71 E-value=0.32 Score=40.04 Aligned_cols=86 Identities=12% Similarity=0.170 Sum_probs=59.8
Q ss_pred HHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 008265 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (572)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 448 (572)
+|..+.+.+.+......++.+...+..-+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666677778888888888887665566778888888888887777777777611 11223456777788888
Q ss_pred HhHHHHHHHHhhh
Q 008265 449 FDRAFRLFRSWTL 461 (572)
Q Consensus 449 ~~~A~~~~~~m~~ 461 (572)
+++|.-++.++..
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 8888888877644
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.69 E-value=4 Score=23.29 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666666655
No 297
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.64 E-value=51 Score=34.35 Aligned_cols=17 Identities=12% Similarity=-0.039 Sum_probs=9.7
Q ss_pred HcCChHHHHHHHHHHHH
Q 008265 336 LAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~ 352 (572)
...|.+.|...|+.+..
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 34456666666665554
No 298
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.55 E-value=31 Score=29.73 Aligned_cols=90 Identities=18% Similarity=0.069 Sum_probs=58.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST-----IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
+...+...|++++|+..++.... .|....+.. |.+.....|.+|+|+.+++...+.+. .......-
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~-------~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elr 165 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALA-------QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELR 165 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHc-------cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHh
Confidence 34567788888888888887764 222233333 33455667888888888887765533 22223334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 008265 405 INACANAGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~ 428 (572)
-+.+...|+-++|..-|....+.+
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHcc
Confidence 556777888888888888877664
No 299
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=82.42 E-value=57 Score=32.67 Aligned_cols=82 Identities=6% Similarity=0.011 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC-chhhHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-NTITWS 402 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~ 402 (572)
..+-..+..++-+.|+.++|++.|+++.+.. . ...+..+...|+.++...+.+.++..++.+..+..... -..+|+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~--p-~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEF--P-NLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhC--C-ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 3333455666678899999999999997521 0 11233477889999999999999999999876543222 235566
Q ss_pred HHHHHH
Q 008265 403 SLINAC 408 (572)
Q Consensus 403 ~li~~~ 408 (572)
..+--+
T Consensus 336 aALLka 341 (539)
T PF04184_consen 336 AALLKA 341 (539)
T ss_pred HHHHHH
Confidence 655433
No 300
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.58 E-value=14 Score=32.07 Aligned_cols=69 Identities=10% Similarity=-0.047 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhc-CChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCChHH
Q 008265 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLAGNTVL 342 (572)
Q Consensus 274 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~ 342 (572)
.|.+.|-.+...+.--++...-.+-..|. .+.++++.++....+. +-.+|+..+..|...+.+.|+++.
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444444444433333333333333332 2344444444433321 113344444444444444444433
No 301
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.44 E-value=76 Score=33.47 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=45.2
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 396 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
...-+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..++|++-+++-+.+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk 741 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK 741 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 344455666667777888888888887776 678888888888899999988877765543
No 302
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.42 E-value=39 Score=30.08 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=10.0
Q ss_pred HHhCCHhHHHHHHHHhhh
Q 008265 444 VEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~ 461 (572)
+..+++.+|.++|+++..
T Consensus 165 a~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555666666655544
No 303
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=81.11 E-value=46 Score=30.75 Aligned_cols=129 Identities=9% Similarity=0.031 Sum_probs=79.8
Q ss_pred cCCChHHHHHhhhc------CCCchhHHHHHHHHHHh-cC-CHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHhcCCHH
Q 008265 203 NKPDVNLAIRYACI------VPRADILFCNFVREFGK-KR-DLVSALRAYDASKK-HLSSPNMYICRTIIDVCGICGDYM 273 (572)
Q Consensus 203 ~~g~~~~a~~~~~~------~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~ 273 (572)
++..+.+|+++|+. +..++.+...+++.... .+ ....-.++.+.+.. .|..++..+...+|..+++.++|.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 44556677777773 33345666677776665 22 23333344444433 345677778888899999999999
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHhc--CChHHHHHHHHH-----HHHcCCCCCHHHHHHHH
Q 008265 274 KSRAIYEDLRSQ-NVTLNIYVFNSLMNVNA--HDLKFTLEVYKN-----MQKLGVMADMASYNILL 331 (572)
Q Consensus 274 ~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~-----m~~~~~~~~~~~~~~ll 331 (572)
+.+++++..... +..-|...|..+|.... |+..-...+.++ +++.|+..+...-..+-
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~ 285 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLS 285 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHH
Confidence 998888887655 56667888888888644 565554444432 23344555554444443
No 304
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.41 E-value=12 Score=28.11 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555566777788888888888888888888888877765
No 305
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=80.05 E-value=41 Score=29.54 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=42.1
Q ss_pred CCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 204 ~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
..++..++.+.-.| ..+||-|.-.+...|+++.|.+.|+...+....-+-...|.-|.. ---|++.-|.+-|-..-
T Consensus 85 R~DftQaLai~P~m---~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 85 RNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFY 160 (297)
T ss_pred hhhhhhhhhcCCCc---HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHH
Confidence 34455555544333 357777777777777777777777777664332222222222222 22366666665555544
Q ss_pred hC
Q 008265 284 SQ 285 (572)
Q Consensus 284 ~~ 285 (572)
+.
T Consensus 161 Q~ 162 (297)
T COG4785 161 QD 162 (297)
T ss_pred hc
Confidence 33
No 306
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.87 E-value=20 Score=31.00 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=52.9
Q ss_pred HHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHhCCH
Q 008265 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA---GCEPNSQCCNILLQACVEACQF 449 (572)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~ 449 (572)
+.+.|+ +.|.+.|-.+...+.--+......|...|. ..+.+++..++....+. +-.+|...+.+|...+.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444444 567777777776665556666666666665 35777788777777652 2356777888888888888888
Q ss_pred hHHH
Q 008265 450 DRAF 453 (572)
Q Consensus 450 ~~A~ 453 (572)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
No 307
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.85 E-value=11 Score=28.46 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
..+-++.+....+-|+..+..+.+.||-+.+++..|.++|+.++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444555666666666666666666666666665554
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.85 E-value=5.7 Score=22.49 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
.+..+...+.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555666666666666666666665
No 309
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.81 E-value=82 Score=32.87 Aligned_cols=17 Identities=6% Similarity=-0.037 Sum_probs=9.4
Q ss_pred hcCCHHHHHHHHHHHHh
Q 008265 268 ICGDYMKSRAIYEDLRS 284 (572)
Q Consensus 268 ~~g~~~~a~~~~~~m~~ 284 (572)
...+.+.|+..|....+
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 44455666666655544
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.74 E-value=5.2 Score=24.01 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRS 284 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 284 (572)
.+++.+...|...|++++|.+++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777777788888888877777653
No 311
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.11 E-value=54 Score=30.33 Aligned_cols=136 Identities=13% Similarity=0.209 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH-cCC-hHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 305 LKFTLEVYKNMQK-LGVMADMASYNILLKACCL-AGN-TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 305 ~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~-~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
..+|+.+|+.... ..+--|..+...+++.... .+. ...-.++.+-+... .| -.++..+...++..+++.++|.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t--~~-~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVST--FS-KSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhc--cc-cCCChhHHHHHHHHHHhcccHHH
Confidence 3445555553221 2344466667777766654 222 22222333333321 12 25677777888889999999999
Q ss_pred HHHHHHHHHHC-CCCCchhhHHHHHHHHHHcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHH
Q 008265 382 ALKVKEDMLSA-GVTPNTITWSSLINACANAGLVEQAMHLFEE-----MLQAGCEPNSQCCNILLQAC 443 (572)
Q Consensus 382 a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~~~~p~~~~~~~li~~~ 443 (572)
-.++|+..... +..-|...|...|......|+..-...+.++ +++.|+..+...-..+-..+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 99988887665 5566888899999999999998777666664 23455666666555554444
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.11 E-value=6.6 Score=22.34 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 401 WSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
|..+..+|...|++++|+..|++..+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444444444444443
No 313
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.07 E-value=53 Score=30.29 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+++.....|..+|.+.+|.++.+...... +.+...+-.++..++..|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 35667778999999999999999998765 66788889999999999998888888887754
No 314
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=78.75 E-value=45 Score=29.21 Aligned_cols=224 Identities=14% Similarity=0.077 Sum_probs=149.0
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH--hcCChHHHH
Q 008265 234 KRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNV--NAHDLKFTL 309 (572)
Q Consensus 234 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~--~~~~~~~a~ 309 (572)
.+....+...+......... .....+......+...+.+..+...+...... ........+...... ..++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35555566666665554322 13567788888899999999999999888753 112223333333222 336788899
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Q 008265 310 EVYKNMQKLGVMADMASYNILLK-ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (572)
Q Consensus 310 ~~~~~m~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (572)
..+.........+ ......... .+...|+++.+...+....... .........+......+...++.+.+...+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELD--PELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 9998887754443 222222333 7889999999999999985410 00012233444445557788999999999999
Q ss_pred HHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
..+.........+..+...+...++.+.+...+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 987632213567888888889999999999999999876 333 444555555555777899999888877654
No 315
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=78.57 E-value=63 Score=30.83 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=30.1
Q ss_pred hhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHH
Q 008265 82 AKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGV 135 (572)
Q Consensus 82 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 135 (572)
...++..+|+..+......-- + ..-.+..+..+..+.++.|.+++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~--~---~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLS--D---LMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHH--H---HHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 345666777777766554311 1 112355677777788888888776654
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.31 E-value=5.6 Score=23.87 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444555555555544444
No 317
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.23 E-value=38 Score=32.35 Aligned_cols=122 Identities=16% Similarity=0.086 Sum_probs=81.6
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcC-ChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 137 (572)
+-+++..+|.. .......+..+.+..+.++..+.++.+....+ .+.- +..|......-...-.++....+|.
T Consensus 54 lerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~L------W~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 54 LERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPEL------WREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHH------HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 44456667754 78888889999999999999999999998744 2332 3333333333333334555555554
Q ss_pred Hhhhc------CC----CCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCC
Q 008265 138 KLNEL------GV----APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP 187 (572)
Q Consensus 138 ~m~~~------~~----~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 187 (572)
+..+. +. .+...+....+.+++.+|.-+..+|..+.|+.+++-+.+.++-
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 44332 11 1222345667888888888888899999999999999887763
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.68 E-value=0.39 Score=39.55 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=71.1
Q ss_pred HHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhH
Q 008265 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (572)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~ 156 (572)
++..+.+.+.+......++.+...+...+ ......++..|++.++.+...++++.... +.+ .
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~-------~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd~---------~ 74 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENN-------PDLHTLLLELYIKYDPYEKLLEFLKTSNN--YDL---------D 74 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-S-------HHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S-C---------T
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccC-------HHHHHHHHHHHHhcCCchHHHHHcccccc--cCH---------H
Confidence 45667777888888888888886543321 44455667778888777777777762211 111 2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCC
Q 008265 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (572)
Q Consensus 157 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~ 236 (572)
.+++.|. +.|.+++|.-++.++.... ..+..+...++++.|.++...... ..+|..++..|...+.
T Consensus 75 ~~~~~c~---~~~l~~~a~~Ly~~~~~~~----------~al~i~~~~~~~~~a~e~~~~~~~-~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 75 KALRLCE---KHGLYEEAVYLYSKLGNHD----------EALEILHKLKDYEEAIEYAKKVDD-PELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHH---TTTSHHHHHHHHHCCTTHT----------TCSSTSSSTHCSCCCTTTGGGCSS-SHHHHHHHHHHCTSTC
T ss_pred HHHHHHH---hcchHHHHHHHHHHcccHH----------HHHHHHHHHccHHHHHHHHHhcCc-HHHHHHHHHHHHhcCc
Confidence 2233332 3577777777776542211 111123344556666655555544 3566666666655543
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.47 E-value=4.3 Score=22.81 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=21.5
Q ss_pred hhhhHhhhhhCChhHHHHHHHHhhhc
Q 008265 117 ASGIVKSIREGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~m~~~ 142 (572)
..+...+.+.|++++|...|+++.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555677899999999999999886
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.63 E-value=15 Score=36.03 Aligned_cols=119 Identities=9% Similarity=0.049 Sum_probs=61.7
Q ss_pred hcCCHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 008265 268 ICGDYMKS-RAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346 (572)
Q Consensus 268 ~~g~~~~a-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 346 (572)
..|++-.| .+++.-++...-.|+.....+.|....|+++.+...+....+. +-....+...++....+.|++++|..+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 34554444 3444444444445666666666666666666666666554432 122344556666666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
-.-|.. +. + -+...........-..|-+|++...|+++...
T Consensus 380 a~~~l~---~e-i-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 380 AEMMLS---NE-I-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHhc---cc-c-CChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 555543 11 1 12222222222333445566666666666544
No 321
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.61 E-value=79 Score=30.47 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP---NTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
.+|..+...+-+.|.++.|...+..+...+... +....-.-+......|+.++|...+++..+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555666666655555555432111 112222233344445555555555555444
No 322
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.11 E-value=44 Score=27.32 Aligned_cols=49 Identities=12% Similarity=0.212 Sum_probs=22.7
Q ss_pred chhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008265 397 NTITWSSLINACANAGL-VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (572)
Q Consensus 397 ~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 445 (572)
+...|.+++.+.++..- .--+..+|+.|++.+.+++..-|..+|.++.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 33444445554433333 23344445555544445555555555555443
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.83 E-value=29 Score=30.44 Aligned_cols=77 Identities=12% Similarity=-0.006 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC--CCCchhhHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG--VTPNTITWSS 403 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ 403 (572)
|.+..+..+.+.+.+.+++....+-.+. -+.|..+-..++..+|-.|+|++|..-++-..... ..+...+|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka-----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA-----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc-----CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 4566677888899999998887766651 13344566677888899999999988777665542 2333455666
Q ss_pred HHHH
Q 008265 404 LINA 407 (572)
Q Consensus 404 li~~ 407 (572)
+|.+
T Consensus 78 lir~ 81 (273)
T COG4455 78 LIRC 81 (273)
T ss_pred HHHH
Confidence 6654
No 324
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=73.52 E-value=11 Score=21.17 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=8.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 008265 404 LINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~ 425 (572)
+...+...|++++|.+.|++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444444444444444433
No 325
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.45 E-value=57 Score=27.79 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (572)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 443 (572)
+++|.+.|+...+. .|+..+|+.-+...
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 34445555554443 55666665555554
No 326
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.16 E-value=45 Score=30.58 Aligned_cols=63 Identities=8% Similarity=-0.018 Sum_probs=42.8
Q ss_pred HHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHH
Q 008265 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (572)
Q Consensus 75 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 137 (572)
..+.+...+.+++++|+..+.++...|...+.-...--..+...+...|...|++..-.+...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 445667788999999999999999998865543322223344556667777777765555443
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.99 E-value=80 Score=31.36 Aligned_cols=115 Identities=8% Similarity=-0.103 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~ 243 (572)
.|++..|-+-+...++.. |.++.........+...|+++.+...+... ...+.+...+++...+.|+++.|...
T Consensus 302 ~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 577776665554444432 233333444455567789999998877654 22346778889999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 244 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
-+.|....++ +...........-..|-++++...++++...
T Consensus 380 a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 380 AEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 9999876554 3333333333445567788888888887654
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.94 E-value=8 Score=21.62 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=23.6
Q ss_pred HHHHHHhHhhcCChhHHHHHHHHHHhhcC
Q 008265 74 YADMASKLAKDGRLEEFAMIVESVVVSEG 102 (572)
Q Consensus 74 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 102 (572)
+-.+...+.+.|++++|.+.|+.++...+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 44566778889999999999999988743
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=71.37 E-value=1e+02 Score=29.75 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=51.4
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP---NSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 396 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
....+|..+...+.+.|.++.|...+..+...+... ...+...-...+...|+..+|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355678999999999999999999999998744211 3344445556677889999999999888763
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.14 E-value=10 Score=21.46 Aligned_cols=28 Identities=25% Similarity=0.171 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHL 353 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 353 (572)
+|..+...|...|++++|...|++..++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555666677777777777777777663
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.86 E-value=1.6e+02 Score=31.43 Aligned_cols=150 Identities=15% Similarity=0.033 Sum_probs=84.6
Q ss_pred hHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHH
Q 008265 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (572)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 199 (572)
+..+.+.+.+++|++.-+..... .|... -...-..++. ++.-.|++++|-.+.-.|... +...|-.-+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~-i~kv~~~yI~---HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~ 431 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFV-IKKVGKTYID---HLLFEGKYDEAASLCPKMLGN-----NAAEWELWVF 431 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccc-hHHHHHHHHH---HHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHH
Confidence 56677888899999888765443 33211 1112223333 334478999999888888753 3345666666
Q ss_pred HHhcCCChHHHHHhhhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------------C-------CCcHHH
Q 008265 200 LCVNKPDVNLAIRYACIVPR--ADILFCNFVREFGKKRDLVSALRAYDASKKHL------------S-------SPNMYI 258 (572)
Q Consensus 200 ~~~~~g~~~~a~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------~-------~~~~~~ 258 (572)
.+...+.......+.-.-++ +..+|..++..|.. .+...-.+ ...+.. . .-+...
T Consensus 432 ~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e---~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L 507 (846)
T KOG2066|consen 432 KFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLE---LIKEWPGHLYSVLTIISATEPQIKQNSESTAL 507 (846)
T ss_pred HhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHH---HHHhCChhhhhhhHHHhhcchHHHhhccchhH
Confidence 66666666554444333332 23677777777776 22222222 111110 0 011223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 259 CRTIIDVCGICGDYMKSRAIYEDLRS 284 (572)
Q Consensus 259 ~~~ll~~~~~~g~~~~a~~~~~~m~~ 284 (572)
-..|...|...+++..|++++-.+++
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccC
Confidence 34577777788888888887766653
No 332
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.47 E-value=1.5e+02 Score=31.07 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.+.....-++..|.+.|-.+.+.++.+.+-..- ....-|...+.-+.+.|+...+-.+.+.+.
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~------~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRL------LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH------HHHHHHHHHHHHHH----------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355566667777888887777777777665421 122345555556666666655555544444
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.32 E-value=13 Score=23.10 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=12.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 008265 404 LINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 334
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.25 E-value=86 Score=31.22 Aligned_cols=45 Identities=9% Similarity=0.204 Sum_probs=19.9
Q ss_pred HHHHHHHCCCCCchhh---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 008265 385 VKEDMLSAGVTPNTIT---WSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (572)
Q Consensus 385 ~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 433 (572)
+.+.+.+.|..++... ..+++...+..|+.+ +.+.+.+.|..++.
T Consensus 183 iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 183 ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 3444455555554432 123344334445543 33444455555543
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.74 E-value=13 Score=23.09 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 008265 227 FVREFGKKRDLVSALRAYDASKKH 250 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~ 250 (572)
|..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666665543
No 336
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.86 E-value=78 Score=27.38 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=29.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 286 (572)
|.+.....|.+++|+..++.....+.. ......--+.+...|+-++|..-|+...+.+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 445555556666666666555443221 1112233345556666666666666655553
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=66.84 E-value=16 Score=20.55 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKK 249 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 249 (572)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445556666666666666666665544
No 338
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.72 E-value=74 Score=27.65 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=55.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHH
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-----FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (572)
+-+.+.|++++|..-|.....+ +++.. ..|..-..++.+.+.++.|++--.+..+.+.. .......-..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-----cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAe 176 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-----CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAE 176 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-----CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHH
Confidence 4577788888888888887763 23221 23444445666777777777777666665322 1122222344
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 008265 407 ACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~ 427 (572)
+|.+...+++|++=|..+.+.
T Consensus 177 ayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHh
Confidence 677777777887777777765
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.66 E-value=48 Score=29.21 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=57.2
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA--GCEPNSQCCNILLQA 442 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~ 442 (572)
|.+.-++.+.+.+.+.+++...++-++.... |..+-..+++.+|-.|++++|..-++..-.. ...+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455567778889999999999888777332 5567788899999999999999888776543 234456677777765
No 340
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=66.34 E-value=27 Score=22.16 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=22.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
.+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666777777777777777777776666554
No 341
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.06 E-value=25 Score=25.13 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=35.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHH
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIY 279 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~ 279 (572)
+..| ...+.++|+..|....+.-..+. -.++..++.+|+..|++++++++-
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3434 56778888888888776533332 236778888888889888877664
No 342
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.40 E-value=84 Score=28.91 Aligned_cols=91 Identities=9% Similarity=-0.021 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHH
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (572)
+..=|++++..++|.++....-+.-+. ...++| .+...-|-.|.+.+....+.++-..-...--.-+...|.+++.
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~--pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaE 161 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQV--PEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAE 161 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcC--cccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHH
Confidence 334478889999998877655444321 111333 3444556668888998888888777665432334445777766
Q ss_pred HHHH-----cCCHHHHHHHH
Q 008265 407 ACAN-----AGLVEQAMHLF 421 (572)
Q Consensus 407 ~~~~-----~g~~~~a~~~~ 421 (572)
-|.. .|.+++|+++.
T Consensus 162 LyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 162 LYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhccccHHHHHHHH
Confidence 6554 58888888877
No 343
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.12 E-value=66 Score=27.91 Aligned_cols=85 Identities=12% Similarity=0.013 Sum_probs=58.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcc
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADM----ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADA 376 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~ 376 (572)
.|++++|..-|......-..... ..|..-..++.+.+.++.|+.-.....+ +.|+- ....--..+|.+.
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie------l~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE------LNPTYEKALERRAEAYEKM 181 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh------cCchhHHHHHHHHHHHHhh
Confidence 37899999999888775322222 2344445677888889888888877776 34432 2333335578888
Q ss_pred ccHHHHHHHHHHHHHC
Q 008265 377 KWWQMALKVKEDMLSA 392 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~ 392 (572)
..+++|++=+.++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8899999988888876
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=64.98 E-value=9.7 Score=20.27 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=19.6
Q ss_pred HHHHHHHhHhhcCChhHHHHHHH
Q 008265 73 YYADMASKLAKDGRLEEFAMIVE 95 (572)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~ 95 (572)
....+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677888999999999999886
No 345
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.44 E-value=46 Score=24.36 Aligned_cols=66 Identities=15% Similarity=0.063 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHH
Q 008265 174 FVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241 (572)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 241 (572)
+.++++.+.+.|+-..+ -...+-.+-...|+.+.|.++++.++..+..|..++.++...|.-+.|.
T Consensus 21 ~~~v~d~ll~~~ilT~~--d~e~I~aa~~~~g~~~~ar~LL~~L~rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTEE--DRNRIEAATENHGNESGARELLKRIVQKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCHH--HHHHHHHhccccCcHHHHHHHHHHhccCCcHHHHHHHHHHHcCchhhhh
Confidence 45667777776653221 1112222222456666777766666644566666666666666655543
No 346
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.37 E-value=1.3e+02 Score=27.91 Aligned_cols=169 Identities=14% Similarity=0.168 Sum_probs=81.0
Q ss_pred HHHHHHHhCC--------CCCCHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 008265 277 AIYEDLRSQN--------VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIY 347 (572)
Q Consensus 277 ~~~~~m~~~g--------~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 347 (572)
.++.-+.+.| ++.|...+|.++.-...+.++--+-+++..+. |-.--...+..+..-|++.++.+.+.+..
T Consensus 59 plYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~ 138 (412)
T COG5187 59 PLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWM 138 (412)
T ss_pred HHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3455555544 34444455555543333333333333333332 22223445666667777777777777776
Q ss_pred HHHHHH-HHhCCCCCCHHHHHHHH-HHHHccccHHHHHHHHHHHHHCCCCCch----hhHHHHHHHHHHcCCHHHHHHHH
Q 008265 348 GEVKHL-EAKGVLKLDVFTYSTIV-KVFADAKWWQMALKVKEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLF 421 (572)
Q Consensus 348 ~~~~~~-~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~ 421 (572)
++..+. ...| .+.|+...-+-+ -.|....-.++-++..+.|.+.|-..+. .+|-.+... ...++.+|-.++
T Consensus 139 ~~~~~~a~stg-~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m--~~RnFkeAa~Ll 215 (412)
T COG5187 139 RRLMRDAMSTG-LKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKM--MRRNFKEAAILL 215 (412)
T ss_pred HHHHHHHHhcc-cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHH--HHHhhHHHHHHH
Confidence 665442 2223 455544332222 2233444456667777777777665433 233333222 223455565555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 008265 422 EEMLQAGCEPNSQCCNILLQACVEACQ 448 (572)
Q Consensus 422 ~~m~~~~~~p~~~~~~~li~~~~~~g~ 448 (572)
.+....=-......|..++.-..-+|-
T Consensus 216 ~d~l~tF~S~El~sY~~~vrYa~~~Gl 242 (412)
T COG5187 216 SDILPTFESSELISYSRAVRYAIFCGL 242 (412)
T ss_pred HHHhccccccccccHHHHHHHHHHhhh
Confidence 555432112334455555555444443
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.29 E-value=1.7e+02 Score=29.51 Aligned_cols=164 Identities=9% Similarity=0.071 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHH
Q 008265 288 TLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (572)
Q Consensus 288 ~p~~~~~~~ll~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 365 (572)
..|....-+++..+..+ +.-+..+-.+|...| -+...+-.+++.|... ..+.-..+|+.+.+. ..|...
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~------dfnDvv 133 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY------DFNDVV 133 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh------cchhHH
Confidence 34556666666666543 455666777777754 3566788888888887 455667778777763 334444
Q ss_pred H-HHHHHHHHccccHHHHHHHHHHHHHCCCCC-----chhhHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHH
Q 008265 366 Y-STIVKVFADAKWWQMALKVKEDMLSAGVTP-----NTITWSSLINACANAGLVEQAMHLFEEMLQ-AGCEPNSQCCNI 438 (572)
Q Consensus 366 ~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ 438 (572)
. ..|..-|-+ ++.+.+...|.++..+=+.. -...|.-+...- ..+.+..+.+...+.. .|..--...+.-
T Consensus 134 ~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qd 210 (711)
T COG1747 134 IGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQD 210 (711)
T ss_pred HHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 4 444444444 78888888888876552221 113455554422 2567777777777764 454555666777
Q ss_pred HHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 439 LLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+-.-|....++++|.+++..+.+.+
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhc
Confidence 7778888999999999998877654
No 348
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.27 E-value=83 Score=25.79 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=73.5
Q ss_pred HHHcCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcccc-HHHHHHHHHHHH
Q 008265 315 MQKLGVMADMAS--YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKW-WQMALKVKEDML 390 (572)
Q Consensus 315 m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 390 (572)
|.+.+..++..+ .+.++.-....+++.....+++.+......... ..+...|.+++.+..+..- --.+..+|.-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 455566666644 577788788889999999999999764332111 2345578999999977665 456788999999
Q ss_pred HCCCCCchhhHHHHHHHHHHcC
Q 008265 391 SAGVTPNTITWSSLINACANAG 412 (572)
Q Consensus 391 ~~g~~p~~~~~~~li~~~~~~g 412 (572)
+.+.+++..-|..+|.++.+-.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCC
Confidence 9888999999999999987753
No 349
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=63.23 E-value=56 Score=30.84 Aligned_cols=81 Identities=10% Similarity=-0.015 Sum_probs=55.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHH
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 408 (572)
-.+-|.+.|.+++|+..|..... +.| |..++..-..+|.+...+..|+.=-...... | ...+.+|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d----~~Y~KAY 168 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----D----KLYVKAY 168 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----h----HHHHHHH
Confidence 34678899999999999988776 345 8888888889999999988777666555432 1 2335566
Q ss_pred HHcCCHHHHHHHHHHH
Q 008265 409 ANAGLVEQAMHLFEEM 424 (572)
Q Consensus 409 ~~~g~~~~a~~~~~~m 424 (572)
.+.+.-..++....+.
T Consensus 169 SRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 169 SRRMQARESLGNNMEA 184 (536)
T ss_pred HHHHHHHHHHhhHHHH
Confidence 6554444444433333
No 350
>PF13934 ELYS: Nuclear pore complex assembly
Probab=62.64 E-value=1.2e+02 Score=27.29 Aligned_cols=104 Identities=15% Similarity=0.077 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHH---HHHHHH
Q 008265 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF---CNFVRE 230 (572)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~li~~ 230 (572)
-+..++.++..+ +.+++++|++.+-.- .+. + .-...++.++...|+.+.|+++++.+.+...+. ..++..
T Consensus 78 ~~~~~~~g~W~L-D~~~~~~A~~~L~~p---s~~-~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLL-DHGDFEEALELLSHP---SLI-P--WFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHh-ChHhHHHHHHHhCCC---CCC-c--ccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 555666766554 568899998887321 111 1 223458888888888888888888876554222 222333
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 008265 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (572)
Q Consensus 231 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (572)
..++.+.+|..+-+...+. -....+..++..+..
T Consensus 151 -La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLE 184 (226)
T ss_pred -HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHH
Confidence 6667888887776655442 113355555655553
No 351
>PRK11619 lytic murein transglycosylase; Provisional
Probab=62.10 E-value=2.2e+02 Score=30.35 Aligned_cols=313 Identities=10% Similarity=0.010 Sum_probs=165.0
Q ss_pred hhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHH
Q 008265 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (572)
Q Consensus 122 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 201 (572)
...+.|++..+..+...+...-+.| + ..+..+.. . ......++....+++-. -.|.....-..-+..+
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL~~----y-l~y~~L~~---~-l~~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPLYP----Y-LEYRQLTQ---D-LMNQPAVQVTNFIRANP---TLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCcHh----H-HHHHHHHh---c-cccCCHHHHHHHHHHCC---CCchHHHHHHHHHHHH
Confidence 3567888888877777765432222 0 01111111 0 01123444444444321 1122212223345566
Q ss_pred hcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH--HHHHH
Q 008265 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK--SRAIY 279 (572)
Q Consensus 202 ~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~--a~~~~ 279 (572)
.+.+++...++++..-|.+...-.....+....|+.++|......+=..|.. ....++.++..+.+.|.+.. ..+-+
T Consensus 110 a~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~ 188 (644)
T PRK11619 110 ARREDWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERI 188 (644)
T ss_pred HHccCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6788888888865556666666677888888999988777766665433322 34567888888887776433 33333
Q ss_pred HHHHhCCCCCCHHHHHHHHHH--------------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCChHHH
Q 008265 280 EDLRSQNVTLNIYVFNSLMNV--------------NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC--LAGNTVLA 343 (572)
Q Consensus 280 ~~m~~~g~~p~~~~~~~ll~~--------------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~g~~~~a 343 (572)
+.+...| +...-..+..- ..++...+..++.. +.++...-..++.++. ...+.+.|
T Consensus 189 ~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A 260 (644)
T PRK11619 189 RLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENA 260 (644)
T ss_pred HHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHH
Confidence 3333333 11111222211 11222222222111 1223322222222222 34456888
Q ss_pred HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 008265 344 QEIYGEVKHLEAKGVLKLDV--FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (572)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (572)
..++...... ....+.. .++..+.......+..+++...++...... .|......-+....+.++++.+...+
T Consensus 261 ~~~~~~~~~~---~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 261 RLMIPSLVRA---QKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred HHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 8888876442 1122222 234444444444433556666666544332 24455566666666889999998888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 422 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
..|.... .-...-.--+.+++...|+.++|..+|+....
T Consensus 336 ~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 336 ARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8885432 22223334556676778999999999998754
No 352
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=61.78 E-value=67 Score=27.44 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc
Q 008265 87 LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 87 ~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~ 142 (572)
++.|+.+|+.+.+....|..-...+..-+-...+..|.+.|.+++|.++|++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 56788888888877655544333333334445677899999999999999998774
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.27 E-value=69 Score=24.21 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHhhcHHHHHHHHHHHHhCCCCCCHHHH
Q 008265 512 KPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISW 551 (572)
Q Consensus 512 ~p~~~~~~~ll~a~~~~~~~a~~~~~~m~~~g~~p~~~~~ 551 (572)
-||...|-+|-..-..-.+....-+.+|...|- |....|
T Consensus 67 ~pdlepw~ALce~rlGl~s~l~~rl~rla~sg~-p~lq~F 105 (115)
T TIGR02508 67 YPDLEPWLALCEWRLGLGSALESRLNRLAASGD-PRLQTF 105 (115)
T ss_pred CchHHHHHHHHHHhhccHHHHHHHHHHHHhCCC-HHHHHH
Confidence 577777766644433344555555555655552 444443
No 354
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.02 E-value=35 Score=21.64 Aligned_cols=32 Identities=6% Similarity=-0.033 Sum_probs=17.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 008265 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (572)
Q Consensus 232 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 263 (572)
.+.|-..++..+++.|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555555444
No 355
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.98 E-value=27 Score=23.64 Aligned_cols=46 Identities=7% Similarity=0.115 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
++...++++.+... +-|..-.-.+|.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555555432 22344445666777777777777777766653
No 356
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=59.95 E-value=73 Score=24.08 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=33.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 008265 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG 319 (572)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~ 319 (572)
..+.+.|++++|..+.+.+ ..||...|-++-....|-.+....-+..|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHHHhhccHHHHHHHHHHHHhCC
Confidence 3456667777777776665 257777777776666666665555555555544
No 357
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=59.51 E-value=2.4e+02 Score=29.93 Aligned_cols=88 Identities=13% Similarity=0.150 Sum_probs=38.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC-CCCchhhHHHHHHHHH
Q 008265 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTPNTITWSSLINACA 409 (572)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~ 409 (572)
...+.-.|.++.|.+.+-.... ...|..++...+.-|.-.+-.+... ..+.... -.|...-+..||..|.
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~------~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~ 335 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEF------NRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYT 335 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-------HHHHHHHHHHHHHTT---------------------------HHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhhcc------CcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHH
Confidence 4455667888888877765221 2445555555554443222211111 2221110 0111255777888887
Q ss_pred Hc---CCHHHHHHHHHHHHHc
Q 008265 410 NA---GLVEQAMHLFEEMLQA 427 (572)
Q Consensus 410 ~~---g~~~~a~~~~~~m~~~ 427 (572)
+. .+..+|.+++-.+...
T Consensus 336 ~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 336 RSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHhccCHHHHHHHHHHHHHc
Confidence 63 4677777777777654
No 358
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.39 E-value=2.5e+02 Score=30.06 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=35.0
Q ss_pred HHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhh
Q 008265 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (572)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~ 141 (572)
-|..+.+.+.+++|+.+-+.....-.. + .....-...+..+.-.|++++|-...-+|..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~---~---~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEER---F---VIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccc---c---chHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 456677788999999887765543211 0 0122233345556677777777766666544
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.14 E-value=33 Score=24.52 Aligned_cols=54 Identities=4% Similarity=-0.031 Sum_probs=41.7
Q ss_pred HHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHH
Q 008265 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVL 136 (572)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 136 (572)
-+..| ..+..++|+..|+...+.-.++.. .+.++..++.+++..|++.+++++-
T Consensus 13 GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~-----rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 13 GLKLY-HQNETQQALQKWRKALEKITDRED-----RFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhhcCChHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433 678889999999999987655431 4777889999999999998877754
No 360
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=58.95 E-value=2.7e+02 Score=30.33 Aligned_cols=193 Identities=11% Similarity=0.040 Sum_probs=104.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHH---HHHhcCChHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 008265 267 GICGDYMKSRAIYEDLRSQNVTLNI-------YVFNSL---MNVNAHDLKFTLEVYKNMQK----LGVMADMASYNILLK 332 (572)
Q Consensus 267 ~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~l---l~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~ll~ 332 (572)
...+++++|..+..++...-..|+. ..|+.+ +..+.++++.+.++-+.... .-..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4557899999998887654222221 133333 33456788888877766543 234455666777778
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHH---HHHHHHH--HHccccH--HHHHHHHHHHHHCC--CCC----chh
Q 008265 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKV--FADAKWW--QMALKVKEDMLSAG--VTP----NTI 399 (572)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~li~~--~~~~g~~--~~a~~~~~~m~~~g--~~p----~~~ 399 (572)
+..-.|+++.|..+..+..++-. ..++.. |..+..+ +...|+. .+.+..|....... -+| -.-
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~----~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMAR----QHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 88889999999998888776432 223333 3333222 3445632 33333333333221 011 123
Q ss_pred hHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 400 TWSSLINACANAG-LVEQAMHLFEEMLQAGCEPNSQCC--NILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 400 ~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
++..++.++.+.. ...++..-+..-......|-.... ..|+......|+.++|...++++....
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 3445555555421 111222222222222212222222 256677788999999999998887644
No 361
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=58.07 E-value=8.9 Score=30.51 Aligned_cols=32 Identities=9% Similarity=0.170 Sum_probs=26.7
Q ss_pred HhhcCChhHHHHHHHHHHhhcCChhHHHhHHH
Q 008265 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLS 112 (572)
Q Consensus 81 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ 112 (572)
+...|.-.+|.++|+.|+..|-.|+.|+.++.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPddW~~Ll~ 136 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDDWDALLK 136 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCccHHHHHH
Confidence 34457788999999999999999999886653
No 362
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.51 E-value=12 Score=29.90 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 201 (572)
.|.-.+|-.+|..|++.|-+|++ |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd---W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD---WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc---HHHHHHHh
Confidence 58888999999999999988865 88887754
No 363
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.06 E-value=91 Score=24.74 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
+..+-++.+....+.|++......+.+|-+.+|+..|.++|+-++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444556666677888888888899999999999999999988875
No 364
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.22 E-value=77 Score=29.33 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIYV 293 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 293 (572)
+++.....|..+|.+.+|.++.+...+.. +.+...|-.++..+...|+--.|.+-++.+.+ .|+..|...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 45556678888999999998888877653 34677788888889999987777777776643 255555433
No 365
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=56.02 E-value=1.5e+02 Score=26.54 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=65.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhc
Q 008265 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486 (572)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (572)
-|.+..+..--.++.+-....++.-+..-..+++ +...|+...|...++.-....-.
T Consensus 168 Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~--------------------- 224 (333)
T KOG0991|consen 168 RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGL--------------------- 224 (333)
T ss_pred hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccc---------------------
Confidence 3445544444444444445556666655555554 44678888888777654321100
Q ss_pred cccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh-cHHHHHHHHHHHHhCCCCCCHH
Q 008265 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-DYYRVKALMNEMRTVGLSPNHI 549 (572)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~-~~~~a~~~~~~m~~~g~~p~~~ 549 (572)
+... ..++..+ .|.+.....++.+|.+ +.++|.+++.++-+.|+.|...
T Consensus 225 ----------Vn~e---nVfKv~d-~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 225 ----------VNQE---NVFKVCD-EPHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred ----------cchh---hhhhccC-CCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 0000 0112222 6888888999999986 7899999999999999988654
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.84 E-value=1.7e+02 Score=27.04 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=33.0
Q ss_pred HhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHH
Q 008265 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172 (572)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~ 172 (572)
...++.+++++|+..|.++...|+.-+..+.+.--..++....-+...|+..
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~ 62 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYC 62 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcc
Confidence 3456889999999999999999988876544433333333333333344433
No 367
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.71 E-value=1.5e+02 Score=27.42 Aligned_cols=58 Identities=5% Similarity=-0.122 Sum_probs=27.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
|.+++..++|.++....-+.-+.--+........-|-.|.|.|....+.++-..-.+.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~ 147 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD 147 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 4555555555555544433322111122333444444556666666666655555443
No 368
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.60 E-value=1.7e+02 Score=27.05 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=7.8
Q ss_pred ccHHHHHHHHHHHH
Q 008265 377 KWWQMALKVKEDML 390 (572)
Q Consensus 377 g~~~~a~~~~~~m~ 390 (572)
.++.+|-.++-+..
T Consensus 206 RnFkeAa~Ll~d~l 219 (412)
T COG5187 206 RNFKEAAILLSDIL 219 (412)
T ss_pred HhhHHHHHHHHHHh
Confidence 45566666555544
No 369
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.57 E-value=3.1e+02 Score=29.69 Aligned_cols=145 Identities=15% Similarity=0.072 Sum_probs=88.9
Q ss_pred HHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhh
Q 008265 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (572)
Q Consensus 75 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ 154 (572)
....+-+-+.|++++|..-|-+-+.. ++|. .++.-+....+...-..+++.+.+.|+.....
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s------------~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dh----- 433 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETIGF-LEPS------------EVIKKFLDAQRIKNLTSYLEALHKKGLANSDH----- 433 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHccc-CChH------------HHHHHhcCHHHHHHHHHHHHHHHHcccccchh-----
Confidence 33444455678998888777655432 2332 24555667777777788889998888765443
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhc
Q 008265 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234 (572)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~ 234 (572)
..+|+.++.. .++.+.-.+..+... .|... ......+..+.+.+-.++|..+-............+++ ..
T Consensus 434 ttlLLncYiK---lkd~~kL~efI~~~~-~g~~~---fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille---~~ 503 (933)
T KOG2114|consen 434 TTLLLNCYIK---LKDVEKLTEFISKCD-KGEWF---FDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLE---DL 503 (933)
T ss_pred HHHHHHHHHH---hcchHHHHHHHhcCC-Cccee---eeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHH---Hh
Confidence 3345555544 466666555554332 22211 12445677788888888887776666554444444444 45
Q ss_pred CCHHHHHHHHHHH
Q 008265 235 RDLVSALRAYDAS 247 (572)
Q Consensus 235 g~~~~a~~~~~~m 247 (572)
|++++|++.+..+
T Consensus 504 ~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 504 HNYEEALRYISSL 516 (933)
T ss_pred cCHHHHHHHHhcC
Confidence 7888888888765
No 370
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.80 E-value=97 Score=24.58 Aligned_cols=44 Identities=14% Similarity=0.275 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
.+-+..+....+-|+......-+++|-+.+++..|.++|+-++.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444445555666666666666666666666666666666654
No 371
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.44 E-value=2.2e+02 Score=28.35 Aligned_cols=201 Identities=13% Similarity=0.048 Sum_probs=97.3
Q ss_pred hhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCccc-chHHHHHHH
Q 008265 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL-DEEFRIVQL 200 (572)
Q Consensus 122 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~ 200 (572)
..+..|+.+- ++.+.+.|..|+... ......+.. ++ ..|+.+-+ +.+.+.|..+... ......+..
T Consensus 8 ~A~~~g~~~i----v~~Ll~~g~~~n~~~-~~g~tpL~~-A~---~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~ 74 (413)
T PHA02875 8 DAILFGELDI----ARRLLDIGINPNFEI-YDGISPIKL-AM---KFRDSEAI----KLLMKHGAIPDVKYPDIESELHD 74 (413)
T ss_pred HHHHhCCHHH----HHHHHHCCCCCCccC-CCCCCHHHH-HH---HcCCHHHH----HHHHhCCCCccccCCCcccHHHH
Confidence 3456676654 444445677776542 112222222 21 24666544 3444445443211 112234666
Q ss_pred HhcCCChHHHHHhhhcCCCch----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHH--HHHHHHHHHhcCCHHH
Q 008265 201 CVNKPDVNLAIRYACIVPRAD----ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI--CRTIIDVCGICGDYMK 274 (572)
Q Consensus 201 ~~~~g~~~~a~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~ 274 (572)
.+..|+.+.+..+++.-.... ..-.+.+...+..|+.+ +++.+.+.|..|+... -...+...+..|+.+-
T Consensus 75 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 75 AVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred HHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 677888888887776532111 11123455566677764 4444555565554321 1223444556777665
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCChHHHHHHH
Q 008265 275 SRAIYEDLRSQNVTLN---IYVFNSLMNVN-AHDLKFTLEVYKNMQKLGVMADMAS---YNILLKACCLAGNTVLAQEIY 347 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~---~~~~~~ll~~~-~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~ 347 (572)
+..++ +.|..++ ....+.+..+. .|+.+ +.+.+.+.|..++... ..+++...+..|+.+-+.-++
T Consensus 151 v~~Ll----~~g~~~~~~d~~g~TpL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll 222 (413)
T PHA02875 151 IELLI----DHKACLDIEDCCGCTPLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFI 222 (413)
T ss_pred HHHHH----hcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHH
Confidence 44444 4443332 23334444443 34443 4455566676665432 124455455667765444443
No 372
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.86 E-value=42 Score=22.75 Aligned_cols=26 Identities=4% Similarity=-0.002 Sum_probs=12.6
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
-.-.+|.+|...|++++|.+...++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444555555555555555555443
No 373
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.03 E-value=1.1e+02 Score=23.57 Aligned_cols=81 Identities=9% Similarity=-0.068 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 008265 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313 (572)
Q Consensus 234 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~ 313 (572)
....++|..+.+.+...+.. ...+--.-+..+.+.|++++|+ .. ....-.||...|-++-....|-.+++...+.
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~AL--l~--~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEAL--LL--PQCHCYPDLEPWAALCAWKLGLASALESRLT 93 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHH--HH--HTTS--GGGHHHHHHHHHHCT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHH--Hh--cccCCCccHHHHHHHHHHhhccHHHHHHHHH
Confidence 34567777777777665431 2222223344567778888872 11 1222357777777777777777777776666
Q ss_pred HHHHcC
Q 008265 314 NMQKLG 319 (572)
Q Consensus 314 ~m~~~~ 319 (572)
.+...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665443
No 374
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=51.32 E-value=2e+02 Score=26.46 Aligned_cols=87 Identities=15% Similarity=0.048 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC-----cHHHHHHHHHHHH
Q 008265 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL-SSP-----NMYICRTIIDVCG 267 (572)
Q Consensus 194 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~-----~~~~~~~ll~~~~ 267 (572)
+-.++-.|.|.=+...-..+|+.+.. =..|+..|.+.|+++.|-.++--+.... ... +...-..++....
T Consensus 156 ~l~Ivv~C~RKtE~~~W~~LF~~lg~----P~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~ 231 (258)
T PF07064_consen 156 YLEIVVNCARKTEVRYWPYLFDYLGS----PRDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMAL 231 (258)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhcCC----HHHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHH
Confidence 44555556666555555566665532 1256677777788887777766654432 122 2333445566666
Q ss_pred hcCCHHHHHHHHHHHHh
Q 008265 268 ICGDYMKSRAIYEDLRS 284 (572)
Q Consensus 268 ~~g~~~~a~~~~~~m~~ 284 (572)
..++|+-+.++.+-+..
T Consensus 232 ~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 232 ESGDWDLCFELVRFLKA 248 (258)
T ss_pred hcccHHHHHHHHHHHHH
Confidence 77777777777666654
No 375
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=51.18 E-value=1e+02 Score=29.15 Aligned_cols=48 Identities=10% Similarity=-0.066 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
|.+++|++.|..-.. +.| +.+++..-..+|.+..++..|+.=......
T Consensus 111 gKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 111 GKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred cchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 678999888876543 666 888888888899998888877776666654
No 376
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.83 E-value=43 Score=25.86 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKK 249 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 249 (572)
-|..|+..|...|..++|++++..+..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355556666666666666666655544
No 377
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.71 E-value=1.6e+02 Score=28.92 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=35.4
Q ss_pred hHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 008265 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (572)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 183 (572)
+..+.+.+++..|.++|..+.+. +.++.. -..+..+..++.. -+.-++++|.+.++....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~--~~~~~~l~~~y~~-WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREE--YQRYKDLCEGYDA-WDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhh--HHHHHHHHHHHHH-HHccCHHHHHHHHHHHHH
Confidence 34566788888888888888876 444332 1122233332222 345667778777776654
No 378
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=50.68 E-value=42 Score=23.02 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=23.4
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008265 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (572)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 445 (572)
....++-++..+++..-.++++..+.+....| ..+..+|.--++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 33444555555555555555555555555554 2444445444444444
No 379
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.17 E-value=2e+02 Score=26.07 Aligned_cols=59 Identities=5% Similarity=-0.101 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRS 284 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~ 284 (572)
-+...+-+.|+++++...+..+...+...+..--|.+-.+|-.. |....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 35666777888888888888888877777776666666665332 556666766666654
No 380
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=49.97 E-value=1.7e+02 Score=25.30 Aligned_cols=59 Identities=7% Similarity=0.042 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------------CCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLS--------------SPNMYICRTIIDVCGICGDYMKSRAIYED 281 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 281 (572)
+--+++-.|.+.-++.+..++++.|.+..+ .+--..-|.....+.+.|.+|.|+.++++
T Consensus 134 iGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 134 IGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 344577888888999999999988865432 22335567888889999999999988874
No 381
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.97 E-value=30 Score=32.05 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=15.2
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCCCC
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAGVT 395 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 395 (572)
+..|....+.||+++|+.++++.++.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44555555555555555555555555544
No 382
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=49.20 E-value=1.8e+02 Score=27.29 Aligned_cols=107 Identities=19% Similarity=0.151 Sum_probs=58.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHhcCC
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS--LMNVNAHD 304 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~ 304 (572)
++....+.+......+.+..+.. ...-...+..+...|++.+|+++..+..+.- + .+.. .+.....+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l---~--~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL---E--ELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---H--hcccchHHHHHhHH
Confidence 45556666666666666666643 3344556777778888888888888776530 0 1100 01111122
Q ss_pred hHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCChHHHH
Q 008265 305 LKFTLEVYKNMQKL-----GVMADMASYNILLKACCLAGNTVLAQ 344 (572)
Q Consensus 305 ~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~ 344 (572)
+++.......+.+. -..-|+..|..++.+|.-.|+...+.
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 33322222222211 01357777888888888888665543
No 383
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=49.12 E-value=2.4e+02 Score=26.74 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCcHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCC----CCHHH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKK----HLSSPNMYICRTIIDVCG-ICGDYMKSRAIYEDLRSQNVT----LNIYV 293 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~g~~----p~~~~ 293 (572)
.+-.....|++-||-+.|++.+....+ .|.+.|+..+..-+..+. ...-+.+-++..+.+.+.|-. .--.+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 444556677777777777776655432 355555554443333222 222233333444444444321 11233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 008265 294 FNSLMNVNAHDLKFTLEVYKNMQ 316 (572)
Q Consensus 294 ~~~ll~~~~~~~~~a~~~~~~m~ 316 (572)
|..+-..-.+++.+|-.+|-+..
T Consensus 186 Y~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHc
Confidence 44443333455555555554443
No 384
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=48.67 E-value=4e+02 Score=29.18 Aligned_cols=227 Identities=11% Similarity=0.043 Sum_probs=120.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHH
Q 008265 229 REFGKKRDLVSALRAYDASKKHLSSPNM-------YICRTIID-VCGICGDYMKSRAIYEDLRSQ----NVTLNIYVFNS 296 (572)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~-~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~ 296 (572)
.......++.+|..++.+....-..|+. ..|+.+-. .....|++++|.++-+...+. -..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 3444568899999999887654222221 13333322 234568899999998887654 11122333333
Q ss_pred HHHH--hcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHH--HHHHcCC--hHHHHHHHHHHHHHHHhC--CCCCCHHH
Q 008265 297 LMNV--NAHDLKFTLEVYKNMQKLGVMADMASY---NILLK--ACCLAGN--TVLAQEIYGEVKHLEAKG--VLKLDVFT 365 (572)
Q Consensus 297 ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~--~~~~~g~--~~~a~~~~~~~~~~~~~~--~~~~~~~~ 365 (572)
+..+ +.|++++|..+..+..+..-..+...+ ..+.. .+...|. +.+....|.......... ...+-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 3333 348999998887776554222333333 33322 3455663 333444444444321111 01122345
Q ss_pred HHHHHHHHHccccHHHHHHHHHHH----HHCCCCCchhhH--HHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHH
Q 008265 366 YSTIVKVFADAKWWQMALKVKEDM----LSAGVTPNTITW--SSLINACANAGLVEQAMHLFEEMLQAG----CEPNSQC 435 (572)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~ 435 (572)
+..++.++.+ ++.+..-...- ......|-...+ ..|+......|+.++|...++++.... ..++...
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 5556666655 33333322222 222222222222 367788888999999999999987532 2333333
Q ss_pred HHHHHHH--HHHhCCHhHHHHHHHH
Q 008265 436 CNILLQA--CVEACQFDRAFRLFRS 458 (572)
Q Consensus 436 ~~~li~~--~~~~g~~~~A~~~~~~ 458 (572)
-...+.. ....|+...+.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 3333332 3457787777776655
No 385
>PRK09687 putative lyase; Provisional
Probab=48.51 E-value=2.3e+02 Score=26.42 Aligned_cols=212 Identities=11% Similarity=-0.047 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY----MKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
+....+.++...|..+ +...+..+.+. +|...-...+.++++.|+. +++..++..+... .++...-...+
T Consensus 39 vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 39 KRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred HHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 4444555555555432 22233333332 4555556666667777653 4567777766433 24444443333
Q ss_pred HHhc--C--C---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008265 299 NVNA--H--D---LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (572)
Q Consensus 299 ~~~~--~--~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~ 371 (572)
.+.. + . ...+...+..... .++..+-...+.++.+.++. ++...+-.+.. .+|..+-...+.
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~-------d~~~~VR~~A~~ 181 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLK-------DPNGDVRNWAAF 181 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc-------CCCHHHHHHHHH
Confidence 3322 1 1 1233333333332 34566666777777777764 45555555543 345555555555
Q ss_pred HHHccc-cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHh
Q 008265 372 VFADAK-WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450 (572)
Q Consensus 372 ~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 450 (572)
++.+.+ +-..+...+..+.. .+|...-...+.++.+.|+ ..+...+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 666543 23456666665554 4566677777888888887 45666655555543 2 234667777888875
Q ss_pred HHHHHHHHhhh
Q 008265 451 RAFRLFRSWTL 461 (572)
Q Consensus 451 ~A~~~~~~m~~ 461 (572)
+|...+..+.+
T Consensus 252 ~a~p~L~~l~~ 262 (280)
T PRK09687 252 TLLPVLDTLLY 262 (280)
T ss_pred hHHHHHHHHHh
Confidence 57777776654
No 386
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.30 E-value=43 Score=31.15 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=36.4
Q ss_pred CCchh-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008265 395 TPNTI-TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (572)
Q Consensus 395 ~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 440 (572)
.||.. -|+..|....+.||+++|+.+++|..+.|+.--..+|-..+
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 45554 46799999999999999999999999999766556654433
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.98 E-value=1.1e+02 Score=26.58 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=37.8
Q ss_pred HhcCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 232 GKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 232 ~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
...++.+......+...+. ...|+..+|..++.++...|+.++|.+...++..-
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3555555444444443332 24688888999999999999999998888888764
No 388
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=46.56 E-value=79 Score=25.18 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008265 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (572)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 245 (572)
.++..++|..|.+.++-..-. ..|......+-..|++.+|.++|+
T Consensus 79 ~~dp~~if~~L~~~~IG~~~A------------------------------lfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 79 CDEPRELFQFLYSKGIGTKLA------------------------------LFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred cCCHHHHHHHHHHCCcchhhH------------------------------HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 355777888888877654332 344455555556666666666664
No 389
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=46.24 E-value=3.9e+02 Score=28.40 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=18.6
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHH
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVV 98 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 98 (572)
...|. +|--+.|.|++++|.++.....
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~ 138 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENR 138 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTG
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhh
Confidence 34554 4466889999999999994443
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.02 E-value=93 Score=26.99 Aligned_cols=32 Identities=9% Similarity=-0.032 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 430 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.|+..+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666666666555543
No 391
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=45.97 E-value=45 Score=17.43 Aligned_cols=26 Identities=23% Similarity=0.064 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
+..+...+...|++++|...|....+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34445555556666666666655543
No 392
>PRK11619 lytic murein transglycosylase; Provisional
Probab=45.08 E-value=4.2e+02 Score=28.38 Aligned_cols=115 Identities=7% Similarity=-0.100 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccH
Q 008265 303 HDLKFTLEVYKNMQKLG-VMADM--ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~-~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 379 (572)
.+.+.|..++....... ..+.. .....+.......+...++...++.... ...+......-+....+.+++
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~------~~~~~~~~e~r~r~Al~~~dw 328 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM------RSQSTSLLERRVRMALGTGDR 328 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc------ccCCcHHHHHHHHHHHHccCH
Confidence 46777777777764332 22221 1222332222222224445555544322 122334444445555577777
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
+.+...+..|....-. ...-.-.+.+++...|+.++|..+|+.+
T Consensus 329 ~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 329 RGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777776543221 2233445666666678888887777775
No 393
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.90 E-value=1.1e+02 Score=27.88 Aligned_cols=56 Identities=21% Similarity=0.143 Sum_probs=26.3
Q ss_pred HHHHHHHccccHHHHHHHHHHHHH----CCC-CCchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 008265 368 TIVKVFADAKWWQMALKVKEDMLS----AGV-TPNTITWSSLINACANAGLVEQAMHLFEE 423 (572)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~----~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 423 (572)
-+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+--+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344555556666666666655521 111 12223334444555555555555544433
No 394
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.08 E-value=1.4e+02 Score=31.08 Aligned_cols=85 Identities=9% Similarity=0.054 Sum_probs=41.7
Q ss_pred HHHHHHhcCCChHHHHHhhhcCCCc---h----hHHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCCCcHHHHHHH
Q 008265 196 RIVQLCVNKPDVNLAIRYACIVPRA---D----ILFCNFVREFGKKRDLV------SALRAYDASKKHLSSPNMYICRTI 262 (572)
Q Consensus 196 ~ll~~~~~~g~~~~a~~~~~~~~~~---~----~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~~~~~~~~~l 262 (572)
.|+.+|..+|++..+.++++.+... + ..+|..|+...+.|.++ .|.+.++.. .+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 5666666666666666665543111 1 44566666666666543 222222222 233455566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 008265 263 IDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 263 l~~~~~~g~~~~a~~~~~~m~ 283 (572)
+.+-...-+-....-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 555444333333333444433
No 395
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=43.63 E-value=2.7e+02 Score=27.24 Aligned_cols=61 Identities=11% Similarity=-0.087 Sum_probs=40.6
Q ss_pred hhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 008265 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV 180 (572)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 180 (572)
.+..+.+.+++..|.++|+++.+...+|.....-..+..+..++.. -+.-++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~-WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLH-WDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHH-HHccCHHHHHHHHhh
Confidence 3456788999999999999999986666544333333333333322 345677888888775
No 396
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.47 E-value=82 Score=22.52 Aligned_cols=59 Identities=15% Similarity=0.068 Sum_probs=35.2
Q ss_pred CchhhhHHH-HHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhh
Q 008265 67 LSSRNDYYA-DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR 125 (572)
Q Consensus 67 p~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 125 (572)
|..+..-|+ ++++-+.+..--++|+++++.|.++|--.......+........++++..
T Consensus 26 ~~~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrGEi~~E~A~~L~~~~~~kgvrs~~~ 85 (98)
T COG4003 26 PKIDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRGEITPEMAKALRVTLVHKGVRSFGP 85 (98)
T ss_pred ccCCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHhhHHHHHHHHhcc
Confidence 333344554 56677777788899999999999987433333333333333334444433
No 397
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.07 E-value=3.9e+02 Score=27.23 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=26.9
Q ss_pred HHHHHHHH-HhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008265 275 SRAIYEDL-RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (572)
Q Consensus 275 a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~ 316 (572)
..+.++.. ...|+..+......+.....|+...|+.+++++.
T Consensus 185 i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 185 LQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 33444433 2346667777777777777777777877777654
No 398
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.93 E-value=5.4e+02 Score=28.52 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=26.1
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVV 99 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 99 (572)
..-|..|+..|...|..++|+++|.+...
T Consensus 504 ~~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 504 SKKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 45688899999999999999999999876
No 399
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.11 E-value=3.3e+02 Score=25.84 Aligned_cols=167 Identities=15% Similarity=0.174 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHH
Q 008265 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~ 314 (572)
++.+....+++.+++.+..| .|..+.. +..++.|...++.+..+.....++-.+..++
T Consensus 36 ~~~~~~e~l~~~Ird~~Map---~Ye~lce-------------------~~~i~~D~~~l~~m~~~neeki~eld~~ied 93 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP---LYEYLCE-------------------SLVIKLDQDLLNSMKKANEEKIKELDEKIED 93 (393)
T ss_pred cCHHHHHHHHHHHHhcccch---HHHHHHh-------------------hcceeccHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35555566666666655443 2333222 3345566666666666555444444444444
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHhCCCCCCHHHHHHHHHH-HHccccHHHHHHHHHHHHH
Q 008265 315 MQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL-EAKGVLKLDVFTYSTIVKV-FADAKWWQMALKVKEDMLS 391 (572)
Q Consensus 315 m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~ 391 (572)
..++ |-.--...+.....-|++.||.+.|.+.++...+. -.-| .+.|+..+.+-+.- |....-+.+-++..+.+.+
T Consensus 94 aeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g-~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE 172 (393)
T KOG0687|consen 94 AEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG-HKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIE 172 (393)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 4432 21112345556677899999999999988776542 2234 57777766554443 3444456666777777777
Q ss_pred CCCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 392 AGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 392 ~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
.|-..+. .+|..+-. ....++.+|-.+|-+...
T Consensus 173 ~GgDWeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 173 EGGDWERRNRLKVYQGLYC--MSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hCCChhhhhhHHHHHHHHH--HHHHhHHHHHHHHHHHcc
Confidence 7765554 34554433 344578888888877653
No 400
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.82 E-value=2.8e+02 Score=24.96 Aligned_cols=19 Identities=5% Similarity=0.321 Sum_probs=11.7
Q ss_pred CChHHHHHHHHHHHHcCCC
Q 008265 303 HDLKFTLEVYKNMQKLGVM 321 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~ 321 (572)
+++.+|..+|++.......
T Consensus 168 eqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5666677777666654443
No 401
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=39.76 E-value=1.5e+02 Score=21.78 Aligned_cols=66 Identities=20% Similarity=0.171 Sum_probs=35.0
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHH
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 453 (572)
+.+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. +| |+ .|..++.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhhh
Confidence 34455555555532 22222222222224467777777777776 42 33 4666677776666655554
No 402
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=38.75 E-value=2.6e+02 Score=24.24 Aligned_cols=77 Identities=10% Similarity=0.004 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHcccc--HHH
Q 008265 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK-VFADAKW--WQM 381 (572)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~--~~~ 381 (572)
-++++++-.++.. ++...-...+.|++++|..-++++.+.-.. ++.-...|..+.. +++..+. +-+
T Consensus 19 REE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~--Lk~~l~~~pel~~ag~~~~a~QEyvE 87 (204)
T COG2178 19 REEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEK--LKRLLAGFPELYFAGFVTTALQEYVE 87 (204)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHhhcchHHHHHH
Confidence 4555666555543 344444556778888888777776543110 2223334555554 4555443 445
Q ss_pred HHHHHHHHHHC
Q 008265 382 ALKVKEDMLSA 392 (572)
Q Consensus 382 a~~~~~~m~~~ 392 (572)
|.-++..+...
T Consensus 88 A~~l~~~l~~~ 98 (204)
T COG2178 88 ATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHhcC
Confidence 66555555544
No 403
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=38.30 E-value=5.2e+02 Score=27.49 Aligned_cols=115 Identities=10% Similarity=-0.011 Sum_probs=63.3
Q ss_pred cCCchhhhHHHHHHHhHh-hcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcC
Q 008265 65 RDLSSRNDYYADMASKLA-KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (572)
Q Consensus 65 ~~p~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~ 143 (572)
..|.....++-.+...+. ...+++.|+..+++....--+++ +... ...+-..++..+.+.+... |...+++..+.-
T Consensus 53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~-~~d~-k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHR-LTDL-KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-hHHH-HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 334446677778888887 45889999999997764433322 2111 1222333455555555555 888887766651
Q ss_pred CCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC
Q 008265 144 VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (572)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 184 (572)
-.-....+...|..+ ++...+ ..++...|++.++.+...
T Consensus 130 ~~~~~~~w~~~frll-~~~l~~-~~~d~~~Al~~L~~~~~~ 168 (608)
T PF10345_consen 130 ETYGHSAWYYAFRLL-KIQLAL-QHKDYNAALENLQSIAQL 168 (608)
T ss_pred hccCchhHHHHHHHH-HHHHHH-hcccHHHHHHHHHHHHHH
Confidence 111111133344443 111111 126888888888776653
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.98 E-value=1.7e+02 Score=21.75 Aligned_cols=55 Identities=9% Similarity=0.101 Sum_probs=24.1
Q ss_pred HHcCChHHHHHHHHHHHHHHHhCCCCCC---H--HHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLD---V--FTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~--~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.+.|++.+|.+.+...-....... .+. . ...-.+.......|+.++|...+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~-~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSN-NSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456666666555444443322221 111 1 111222333444566666666555544
No 405
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.64 E-value=1.7e+02 Score=27.35 Aligned_cols=71 Identities=11% Similarity=0.242 Sum_probs=51.7
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----------hCCHhHH
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE----------ACQFDRA 452 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~A 452 (572)
.++|+.+.+.++.|.-..+..+.-.+.+.=.+.+.+.+|+.+.....+ |..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 568888888888998888888877788878888889999888753222 5556655543 5666666
Q ss_pred HHHHHH
Q 008265 453 FRLFRS 458 (572)
Q Consensus 453 ~~~~~~ 458 (572)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666654
No 406
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=37.45 E-value=1.8e+02 Score=28.97 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+++-.++++.+.+.| .+| ....-|++|.+.+++++|.+.+++-.+.+
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~ 116 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAG 116 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcC
Confidence 4677777777777765 344 33345778888888888888877665544
No 407
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=37.25 E-value=3.6e+02 Score=25.35 Aligned_cols=24 Identities=8% Similarity=-0.022 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHhCCHhHHH
Q 008265 430 EPNSQCCNILLQACVEACQFDRAF 453 (572)
Q Consensus 430 ~p~~~~~~~li~~~~~~g~~~~A~ 453 (572)
.-|...|..++.||.-.|+.+.+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 346667778888887777665554
No 408
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.95 E-value=96 Score=23.95 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=14.7
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLS 391 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (572)
-|..|+.-|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 344555555555555555555555544
No 409
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.89 E-value=1.8e+02 Score=23.94 Aligned_cols=64 Identities=19% Similarity=0.108 Sum_probs=41.8
Q ss_pred HHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 008265 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (572)
Q Consensus 384 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 448 (572)
++...+++.|++++..= ..++..+...++.-.|.++++++.+.+...+..|.-..++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 45556677777655433 45677777777778899999999887766665554444455555443
No 410
>PRK09687 putative lyase; Provisional
Probab=36.86 E-value=3.6e+02 Score=25.21 Aligned_cols=198 Identities=11% Similarity=-0.048 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHhcCCH----HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHH
Q 008265 222 ILFCNFVREFGKKRDL----VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY-----MKSRAIYEDLRSQNVTLNIY 292 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-----~~a~~~~~~m~~~g~~p~~~ 292 (572)
..-...+.++++.|+. +++...+..+... .++..+-...+.+++..+.- ..+...+...... ++..
T Consensus 69 ~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~ 143 (280)
T PRK09687 69 IERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTN 143 (280)
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHH
Confidence 4444556666777763 4566666665332 35666666666666665431 2334444443333 2433
Q ss_pred HHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 293 VFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG-NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (572)
Q Consensus 293 ~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 369 (572)
+-...+.+.. ++ +.+...+-.+.+ .+|...-...+.++.+.+ +...+...+..+.. .++..+-...
T Consensus 144 VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~-------D~~~~VR~~A 212 (280)
T PRK09687 144 VRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ-------DKNEEIRIEA 212 (280)
T ss_pred HHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc-------CCChHHHHHH
Confidence 3334444433 33 556666666665 345566666666666653 23455555555553 4677777888
Q ss_pred HHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
+.++.+.|+. .++..+-...+.+ + ..-..+.++...|.. +|...+..+.+. .||..+-...+.+|.
T Consensus 213 ~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 213 IIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 8889888884 5666555555442 2 245678888888885 688888888765 457777666666664
No 411
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.64 E-value=3.9e+02 Score=25.58 Aligned_cols=68 Identities=21% Similarity=0.172 Sum_probs=35.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHccccHHHHHHHHHHHHH-----CCCCCch
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY--STIVKVFADAKWWQMALKVKEDMLS-----AGVTPNT 398 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~ 398 (572)
++...-+.++.++|.+.++++.+.-... -.|+...| +.....+...|+..++.+++++..+ .|++|++
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 3344445556666666666665432222 23444433 3334445556666666666666655 4555544
No 412
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.43 E-value=2e+02 Score=30.13 Aligned_cols=47 Identities=4% Similarity=-0.043 Sum_probs=28.1
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHCC--CCCchhhHHHHHHHHHHcCCH
Q 008265 368 TIVKVFADAKWWQMALKVKEDMLSAG--VTPNTITWSSLINACANAGLV 414 (572)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~ 414 (572)
+|+.+|..+|++-++.++++...... -+.=...||..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56677777777777777777666542 122223456666666666654
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.25 E-value=4.3e+02 Score=26.01 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=9.2
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 008265 233 KKRDLVSALRAYDASKKH 250 (572)
Q Consensus 233 ~~g~~~~a~~~~~~m~~~ 250 (572)
+.+++..|.++|+.+.++
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 445555555555555444
No 414
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.39 E-value=1.2e+02 Score=29.92 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKK 249 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 249 (572)
.++--+.-+|.-.+++.+|.++|....-
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777778888889888887643
No 415
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.89 E-value=1.2e+02 Score=27.70 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=10.4
Q ss_pred HHHhHhhcCChhHHHHHHHHH
Q 008265 77 MASKLAKDGRLEEFAMIVESV 97 (572)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m 97 (572)
+...+.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444445555555555544
No 416
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=34.58 E-value=2.1e+02 Score=24.96 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
...+.+++.|...|+++.|.++|..+.+.. ..|.. .|+.=+..+.+.+.-....+.++.|.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 467788999999999999999999888752 23332 56666666666666555555555554
No 417
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=33.60 E-value=2.2e+02 Score=21.93 Aligned_cols=11 Identities=9% Similarity=0.280 Sum_probs=4.9
Q ss_pred HHHHhCCHhHH
Q 008265 442 ACVEACQFDRA 452 (572)
Q Consensus 442 ~~~~~g~~~~A 452 (572)
.+.+.|++++|
T Consensus 49 sLmNrG~Yq~A 59 (116)
T PF09477_consen 49 SLMNRGDYQEA 59 (116)
T ss_dssp HHHHTT-HHHH
T ss_pred HHHhhHHHHHH
Confidence 34455555555
No 418
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.35 E-value=2.2e+02 Score=22.08 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=21.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 438 (572)
+|+.+.++.-.++|+++.+.|.+.| ..+...-+.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~e 100 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKE 100 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4555666677777888777777776 444444333
No 419
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=33.32 E-value=5.7e+02 Score=26.55 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=66.5
Q ss_pred hhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHh-cCCCh
Q 008265 129 IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV-NKPDV 207 (572)
Q Consensus 129 ~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~ 207 (572)
.+.+..++..+... .|. .+..+.+-.-.=.+-|..+.+.++|++-.. ++ |.+...|...+.-+. ..|+.
T Consensus 61 ~~~~r~~y~~fL~k--yPl------~~gyW~kfA~~E~klg~~~~s~~Vfergv~-ai-p~SvdlW~~Y~~f~~n~~~d~ 130 (577)
T KOG1258|consen 61 VDALREVYDIFLSK--YPL------CYGYWKKFADYEYKLGNAENSVKVFERGVQ-AI-PLSVDLWLSYLAFLKNNNGDP 130 (577)
T ss_pred HHHHHHHHHHHHhh--Ccc------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hh-hhHHHHHHHHHHHHhccCCCH
Confidence 35566666666654 453 444444332233456888899999988665 33 344555655444433 35566
Q ss_pred HHHHHhhhcCC-------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008265 208 NLAIRYACIVP-------RADILFCNFVREFGKKRDLVSALRAYDASKKH 250 (572)
Q Consensus 208 ~~a~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 250 (572)
+.....|+... .++..|...|..-..++++.....+|+++.+.
T Consensus 131 ~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 131 ETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 65555555421 12356667777777778888888888887763
No 420
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.98 E-value=5.3e+02 Score=26.47 Aligned_cols=49 Identities=10% Similarity=-0.035 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008265 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (572)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~ 317 (572)
..+.+.|....-+|.-.|+..+..+....+...+++++.-.++.++..+
T Consensus 311 ~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~ 359 (519)
T KOG0159|consen 311 ELSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILA 359 (519)
T ss_pred cCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 3456666666667777777666666666666667777666666666655
No 421
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=32.61 E-value=5.9e+02 Score=26.47 Aligned_cols=414 Identities=9% Similarity=-0.008 Sum_probs=206.4
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
-..|+.+|..--...+.+.+...+..++..-+- - ...+.....-=.+.|..+.+..+|++-.+. +.-
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl--~------~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~---- 111 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSKYPL--C------YGYWKKFADYEYKLGNAENSVKVFERGVQA-IPL---- 111 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhhCcc--H------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhh----
Confidence 466777777766666777888888888866332 1 222222333344678888999999887775 222
Q ss_pred hhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHhC-CCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCch-hHHHHH
Q 008265 151 DGSGFKLLKNECQRLL-DSGEVEMFVGLMEVLEEF-RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD-ILFCNF 227 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~-~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~l 227 (572)
....++..|.... ..|+.+...++|+..... |..-.....|...+.--..++++.....+++++.+.+ ..++..
T Consensus 112 ---SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~ 188 (577)
T KOG1258|consen 112 ---SVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRH 188 (577)
T ss_pred ---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence 3333444333322 256777777778775543 4444455668778887788888888888888765543 122222
Q ss_pred HHHHHh---c------CCHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHH
Q 008265 228 VREFGK---K------RDLVSALRAYDASKKH----LSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQNVTLNIYV 293 (572)
Q Consensus 228 i~~~~~---~------g~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~ 293 (572)
-.-|.+ . ...+++.++-.....+ -..+....+..-++--... +.++++.....+...
T Consensus 189 f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~--------- 259 (577)
T KOG1258|consen 189 FDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS--------- 259 (577)
T ss_pred HHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH---------
Confidence 221111 1 1222222222111110 0001111111111110000 111111111111000
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc---CC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 008265 294 FNSLMNVNAHDLKFTLEVYKNMQKL---GV----MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (572)
Q Consensus 294 ~~~ll~~~~~~~~~a~~~~~~m~~~---~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (572)
+.-.+.-+.....+....|+.-.+. .+ .++..+|..-+.--...|+.+.+.-+|+...-.. ..=...|
T Consensus 260 ~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-----A~Y~efW 334 (577)
T KOG1258|consen 260 IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-----ALYDEFW 334 (577)
T ss_pred HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-----hhhHHHH
Confidence 0000000111222223333333221 12 2345678888888888899988888888776311 1112234
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCCCC--CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHH
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAGVT--PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC-CNILLQAC 443 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~ 443 (572)
--.+.-....|+.+-|..++....+--++ |....+.+.+. -..|+++.|..+++.+.+.- |+..- -..-+..-
T Consensus 335 iky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e 410 (577)
T KOG1258|consen 335 IKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE--ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWE 410 (577)
T ss_pred HHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHH
Confidence 34444444448888887777766554332 23333333332 34578999999999987762 55322 22223334
Q ss_pred HHhCCHhHHH---HHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCC-CHHHHH
Q 008265 444 VEACQFDRAF---RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP-TTTTYN 519 (572)
Q Consensus 444 ~~~g~~~~A~---~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~ 519 (572)
.+.|+.+.+. +++....... +..|+.+ -..-|.
T Consensus 411 ~r~~~~~~~~~~~~l~s~~~~~~-------------------------------------------~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 411 RRKGNLEDANYKNELYSSIYEGK-------------------------------------------ENNGILEKLYVKFA 447 (577)
T ss_pred HHhcchhhhhHHHHHHHHhcccc-------------------------------------------cCcchhHHHHHHHH
Confidence 5677777776 3332221100 0001111 111222
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 008265 520 ILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562 (572)
Q Consensus 520 ~ll~a~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 562 (572)
-+..-+.++++.|..++.+|.+. +.++...|..+++-+...+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 33333445788899888888774 3456677777777665544
No 422
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.56 E-value=3.8e+02 Score=24.22 Aligned_cols=153 Identities=12% Similarity=0.163 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 302 (572)
.....+..|.+.-++..|....+++.+ | ..+-.++++ |.+..+-.--.++.+-....++.-+.....+++..-.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~ 205 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIE----P-IQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQ 205 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhh----h-HHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhcc
Confidence 344456666666666666666666544 2 223333333 4555554444455555555555555555555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
||..+|+.-++.-... .| +-.+..+|+-.. .|.......++..|. .+++++|
T Consensus 206 GDMRQalNnLQst~~g------------------~g-~Vn~enVfKv~d--------~PhP~~v~~ml~~~~-~~~~~~A 257 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNG------------------FG-LVNQENVFKVCD--------EPHPLLVKKMLQACL-KRNIDEA 257 (333)
T ss_pred chHHHHHHHHHHHhcc------------------cc-ccchhhhhhccC--------CCChHHHHHHHHHHH-hccHHHH
Confidence 6666555544433221 01 111233443322 466666666665544 4578888
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHH
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACAN 410 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (572)
.+++.++-+.|..|... .+.+.+.+-.
T Consensus 258 ~~il~~lw~lgysp~Di-i~~~FRv~K~ 284 (333)
T KOG0991|consen 258 LKILAELWKLGYSPEDI-ITTLFRVVKN 284 (333)
T ss_pred HHHHHHHHHcCCCHHHH-HHHHHHHHHh
Confidence 88888888888776543 3445555433
No 423
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=31.53 E-value=8e+02 Score=27.68 Aligned_cols=315 Identities=11% Similarity=0.086 Sum_probs=158.8
Q ss_pred hHhhhhhCChhHHHHHHHHhhhcCCCCc-chhhhhhhHHHHHHHHHHhhh---hhHHHHHHHHHHHHhCCCCCcccchHH
Q 008265 120 IVKSIREGRIDCVVGVLKKLNELGVAPL-ELFDGSGFKLLKNECQRLLDS---GEVEMFVGLMEVLEEFRLPVKELDEEF 195 (572)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~~~~~l~~~~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (572)
=.++...+.++.|+..|+++... .|. ..-+...|++=+......... ..+++|+.-|+.+... +..+.-|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 556 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRES--FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG---VGAPLEYL 556 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhc--CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC---CCCchHHH
Confidence 34566778899999999988765 232 112223333323222222222 3578888888877653 22223454
Q ss_pred HHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHH-----HHHHHHHHHhcCCCCcHHHHHHHHHHH---H
Q 008265 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS-----ALRAYDASKKHLSSPNMYICRTIIDVC---G 267 (572)
Q Consensus 196 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~-----a~~~~~~m~~~~~~~~~~~~~~ll~~~---~ 267 (572)
.-.-+|-+.|++++-.+.+.. .+.-|.+.-.+.. ..++.+....+ ...+|--|+-+. -
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 622 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLL----------ALKRYSQHPEISRLRDHLVYRLHESLYKH----RREALVFMLLALWIAP 622 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHH----------HHHhcCCCCccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCc
Confidence 445556677777765553221 1222222111111 11222222221 222332222222 1
Q ss_pred hcCCHHHHHHHHHHHHhCC-------CCCCHH-----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 268 ICGDYMKSRAIYEDLRSQN-------VTLNIY-----VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (572)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~g-------~~p~~~-----~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 335 (572)
+.-...+-.++|+.+..+- +.+... -+..++....|..---.++|+..... +|-.+...+.-..+
T Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 699 (932)
T PRK13184 623 EKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDL---RDYRALADIFYVAC 699 (932)
T ss_pred ccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhc---ccHHHHHHHHHHHH
Confidence 2223344456666665431 112211 24445555566666666777776653 35566666666778
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchh--hHHHHH
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDV--------FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI--TWSSLI 405 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li 405 (572)
..|.++-+.+..+.+.+.-..-...-+. ..|-.-+.+......++++.+.+... .|... .+..++
T Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 774 (932)
T PRK13184 700 DLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT-----DPTLILYAFDLFA 774 (932)
T ss_pred HhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC-----CHHHHHHHHHHHH
Confidence 8999988877776665421011011111 11333345555555666666544432 23333 333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 406 NACANAGLVEQAMHLFEEMLQAGCEPN--SQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.-+.-.++.+....+.+.+...-.... ......-|.+|.-..++++|.++++....
T Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (932)
T PRK13184 775 IQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPL 832 (932)
T ss_pred HHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCCh
Confidence 334444566666666666554422221 22345667888999999999999976544
No 424
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=31.42 E-value=3.4e+02 Score=23.33 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 008265 308 TLEVYKNMQKLGVMAD-MASYNILLKACCLAG 338 (572)
Q Consensus 308 a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g 338 (572)
|..-|++.... .|+ ..++-.+..+|...+
T Consensus 54 AisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 54 AISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 33335555553 344 355556666655433
No 425
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.20 E-value=7e+02 Score=26.91 Aligned_cols=177 Identities=16% Similarity=0.134 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----------HHHHHh--c
Q 008265 238 VSALRAYDASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN----------SLMNVN--A 302 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----------~ll~~~--~ 302 (572)
++-...+++|+++--.|+ ..+...++-.|....+++...++.+.+..- ||..-+. -.++-. -
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 344556778877643443 345566677788889999999999999875 5543322 112211 2
Q ss_pred CChHHHHHHHHHHHHc-C-CCCCHHHH-----HHH--HHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH---HHHHHH
Q 008265 303 HDLKFTLEVYKNMQKL-G-VMADMASY-----NIL--LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF---TYSTIV 370 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~-~-~~~~~~~~-----~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~li 370 (572)
|+-++|+.+.-.|.+. | +.||.... .-+ -..|...+..+.|.+.|++.-+ +.|+.+ -+..|+
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe------veP~~~sGIN~atLL 330 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE------VEPLEYSGINLATLL 330 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc------cCchhhccccHHHHH
Confidence 5778888887777653 3 55665432 111 1234455567778888888776 456554 344454
Q ss_pred HHHHccccHHHHHHHHH------H-HHHCCC------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008265 371 KVFADAKWWQMALKVKE------D-MLSAGV------TPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 371 ~~~~~~g~~~~a~~~~~------~-m~~~g~------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 428 (572)
.+-.+. ++..+++-. . +-+.|. -.|+.+ .+.+-.-++++.+|.+.-+.|.+..
T Consensus 331 ~aaG~~--Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~---y~~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 331 RAAGEH--FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVAT---YFEASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred HHhhhh--ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHH---hhhhhhhccCHHHHHHHHHHHhccC
Confidence 443321 222111111 1 111111 112222 2444455678888888888887753
No 426
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.74 E-value=3e+02 Score=25.92 Aligned_cols=43 Identities=2% Similarity=0.064 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
.++++.|.+.++.|.-..|.-+.-.+.+.=.+.+++.+|+.+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 4556666666677766666655555666666666677776665
No 427
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.43 E-value=2.3e+02 Score=21.02 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=14.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 008265 263 IDVCGICGDYMKSRAIYEDLRS 284 (572)
Q Consensus 263 l~~~~~~g~~~~a~~~~~~m~~ 284 (572)
.......|++++|.+.+++..+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3445666777777777777653
No 428
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=29.60 E-value=7.4e+02 Score=27.10 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=51.1
Q ss_pred hHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhC----ChhH-HHHHHHHhhhcCCCC
Q 008265 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG----RIDC-VVGVLKKLNELGVAP 146 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g----~~~~-A~~~~~~m~~~~~~p 146 (572)
..+....+.+-..|++++|+.+++-.-+-..-....+..+ ...+......+ +... |...-+-.......+
T Consensus 623 ~i~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~L-----S~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~ 697 (835)
T KOG2168|consen 623 KIILEVASEADEDGLFEDAILLYHLAGDYDKALELINKLL-----SQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDS 697 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHHH-----HHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcc
Confidence 4445566667777999999888876543221111111111 11222221111 2221 222222222233444
Q ss_pred cchhhhhhhHHHHHHHH--HHhhhhhHHHHHHHHHHHHhC
Q 008265 147 LELFDGSGFKLLKNECQ--RLLDSGEVEMFVGLMEVLEEF 184 (572)
Q Consensus 147 ~~~~~~~~~~~l~~~~~--~~~~~g~~~~a~~~~~~~~~~ 184 (572)
....+ .++.++++... .+...|.+++|+++++.+.-.
T Consensus 698 ~~~~~-~t~~lLl~~~~~f~~y~~~~~e~aL~~le~l~Li 736 (835)
T KOG2168|consen 698 AKVVV-KTLSLLLDLVSFFDLYHNGEWEEALSILEHLDLI 736 (835)
T ss_pred hhhHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 44322 25555555332 234568888888888877644
No 429
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.54 E-value=5.7e+02 Score=25.38 Aligned_cols=105 Identities=10% Similarity=-0.055 Sum_probs=56.3
Q ss_pred HHHHhHhhcCChhHHHHHHHHHH-----hhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc--CCCCcc
Q 008265 76 DMASKLAKDGRLEEFAMIVESVV-----VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL--GVAPLE 148 (572)
Q Consensus 76 ~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~ 148 (572)
.++..+....+..+.++..+... ..+.........+..-.+..+++.++-.|++..|+.+++.+.-. ++....
T Consensus 80 nvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V 159 (404)
T PF10255_consen 80 NVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKV 159 (404)
T ss_pred HHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccC
Confidence 44555666666665555544421 11111111223344556677889999999999999998776432 111111
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 008265 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE 182 (572)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 182 (572)
... -++++-...-.+...+++.+|++.|...+
T Consensus 160 ~~~--~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 160 PAC--HISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cch--heehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 101 11111111112234689999999988764
No 430
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.80 E-value=2.2e+02 Score=20.44 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=19.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 435 (572)
+++.+.++.-.++|+++++.|.++| ..+...
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~ 67 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPEM 67 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 4555566666777777777777666 444433
No 431
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=28.63 E-value=9e+02 Score=27.37 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHhC
Q 008265 256 MYICRTIIDVCGICG--DYMKSRAIYEDLRSQ 285 (572)
Q Consensus 256 ~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~ 285 (572)
..-...+|.+|++.+ ++++|+.+..++++.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 345567888999998 899999999999876
No 432
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=28.09 E-value=3.3e+02 Score=22.16 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHccc---cHHHHHHHHHHHHH-CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 361 LDVFTYSTIVKVFADAK---WWQMALKVKEDMLS-AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 361 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
++..+--.+..++.+.. +..+.+.+++++.+ ....-.......|.-++.+.++++++.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34444444444555433 45566667777665 222223344455666677777777777777766654
No 433
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=27.90 E-value=5.3e+02 Score=24.51 Aligned_cols=122 Identities=6% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 272 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
..+|.++|++..+. -..+|+ ..+....--...+.+.+.+...-...-..+.-+..+.|+..+|.+.|+.+.
T Consensus 232 i~~AE~l~k~ALka----~e~~yr-----~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 232 IVDAERLFKQALKA----GETIYR-----QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLM 302 (556)
T ss_pred HHHHHHHHHHHHHH----HHHHHh-----hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch-hhHHHHH
Q 008265 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT-ITWSSLI 405 (572)
Q Consensus 352 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li 405 (572)
+ +-.+..-......||.++....-+.....++.+..+-....+. .+|++.+
T Consensus 303 k---e~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 303 K---EFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred h---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
No 434
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.60 E-value=8.1e+02 Score=26.48 Aligned_cols=187 Identities=13% Similarity=0.095 Sum_probs=93.3
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHH---HHhhhhHhhhhhCChhHHHHHHHHhhhc-C-C
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLE---MVASGIVKSIREGRIDCVVGVLKKLNEL-G-V 144 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~m~~~-~-~ 144 (572)
+.++-..++-.|....+++..+++.+.+... |+.....-.-+ .|.-.+..-.+.|+-+.|+++.-.|.+. | +
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 3455566666777778888888888777654 22111000000 0111222334557788898887766655 3 5
Q ss_pred CCcchhhhhhhHHHHHHH--HHHhhhhhHHHHHHHHHHHHhCCCCCccc--chHHHHHHHHhcCCChHHHHHhhhcCCCc
Q 008265 145 APLELFDGSGFKLLKNEC--QRLLDSGEVEMFVGLMEVLEEFRLPVKEL--DEEFRIVQLCVNKPDVNLAIRYACIVPRA 220 (572)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 220 (572)
.||... ..=+++-+.+ ..+-+.+..+.|.+.|.+.-+. .|... .-+..|+.+..+ .++..+++-
T Consensus 277 apDm~C--l~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG~--~Fens~Elq------ 344 (1226)
T KOG4279|consen 277 APDMYC--LCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAGE--HFENSLELQ------ 344 (1226)
T ss_pred CCceee--eechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhhh--hccchHHHH------
Confidence 676441 1112222221 2334567788888888876543 33221 223333333221 222222211
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
.+--.|-..+++.|.+++-.++|+-.. | +.+-.-.+++.+|.+.-+.|-+.
T Consensus 345 -~IgmkLn~LlgrKG~leklq~YWdV~~----------y---~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 345 -QIGMKLNSLLGRKGALEKLQEYWDVAT----------Y---FEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred -HHHHHHHHHhhccchHHHHHHHHhHHH----------h---hhhhhhccCHHHHHHHHHHHhcc
Confidence 112223344567777777777665321 1 22233445666666666666654
No 435
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=27.30 E-value=4.5e+02 Score=23.55 Aligned_cols=20 Identities=5% Similarity=0.087 Sum_probs=10.0
Q ss_pred HHHHHccccHHHHHHHHHHH
Q 008265 370 VKVFADAKWWQMALKVKEDM 389 (572)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m 389 (572)
|......|+++.|++....+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 34444555555555555544
No 436
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.16 E-value=2.6e+02 Score=20.57 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 419 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
++|+.....|+..|..+|..+++-..-+-..+...++++.|-.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6677777777777788888777777666667777777777653
No 437
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.11 E-value=1.7e+02 Score=29.27 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=62.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccccHHHHHHHHHHHHHCCCCCch-hhHHHHHHHHH
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY-STIVKVFADAKWWQMALKVKEDMLSAGVTPNT-ITWSSLINACA 409 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~ 409 (572)
+-+.+.++++.|..++.++.+ +.||...| ..-..++.+.+++..|+.=+....+.. |+. ..|--=..+|.
T Consensus 12 n~~l~~~~fd~avdlysKaI~------ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE------LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh------cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHH
Confidence 344556677888888887777 45654443 333367777888887777777666652 322 22222233444
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 008265 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (572)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 446 (572)
+.+++.+|...|+.... +.|+..-....+.-|-+.
T Consensus 84 ~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKK--LAPNDPDATRKIDECNKI 118 (476)
T ss_pred hHHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHH
Confidence 45556666666665554 367776666666665443
No 438
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=27.06 E-value=7.2e+02 Score=25.70 Aligned_cols=32 Identities=6% Similarity=0.129 Sum_probs=18.4
Q ss_pred CCCCCCHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008265 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (572)
Q Consensus 285 ~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~ 316 (572)
.|+..+......+.....|+...|+..++++.
T Consensus 203 egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai 234 (507)
T PRK06645 203 ENLKTDIEALRIIAYKSEGSARDAVSILDQAA 234 (507)
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35555555555555555566666666665553
No 439
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=27.04 E-value=2.6e+02 Score=20.64 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=27.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCC
Q 008265 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGD 271 (572)
Q Consensus 218 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~ 271 (572)
|.+...--.+...+...|+++.|.+.+-.+.+..... +...-..|+..+.-.|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4444455556666777777777777776665543222 22334445554444443
No 440
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.74 E-value=4.5e+02 Score=23.31 Aligned_cols=99 Identities=13% Similarity=0.036 Sum_probs=51.9
Q ss_pred hHhhcCChhHHHHHHHHHHhh----cCChhHHHhHHHHHHHhhhhHhhhhhCC-------hhHHHHHHHHhhhcCCCCcc
Q 008265 80 KLAKDGRLEEFAMIVESVVVS----EGNVSKFASMLSLEMVASGIVKSIREGR-------IDCVVGVLKKLNELGVAPLE 148 (572)
Q Consensus 80 ~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~ 148 (572)
.+.....+++|++.|.-..-. +..+.. ....+..+.-.|-..|+ +..|++.|.+..+..-.|..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~-----~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~ 160 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSK-----KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE 160 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 344556777787777665432 122221 12223333334444455 35677777776665444333
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCC
Q 008265 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (572)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 185 (572)
..+...+-.++.-. ..+.|+.++|.+.|..+...+
T Consensus 161 ~~~~~~l~YLigeL--~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 161 GMDEATLLYLIGEL--NRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred CchHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHcCC
Confidence 22223333333222 134788999999988887654
No 441
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.71 E-value=8.3e+02 Score=26.35 Aligned_cols=154 Identities=12% Similarity=0.037 Sum_probs=73.0
Q ss_pred HhhhhhCChhHHHHHHHHhh-hcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH-hCCCCCcccchHHHHH
Q 008265 121 VKSIREGRIDCVVGVLKKLN-ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE-EFRLPVKELDEEFRIV 198 (572)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~~ll 198 (572)
..|...|++++|+++--..- ...+.++.. .+..++..|.. .-.+.+.+.++.-. ..+++++=......++
T Consensus 67 KVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~----y~etivak~id----~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi 138 (929)
T KOG2062|consen 67 KVYYYLGEYEDALEYALRAGDDFDVDENSD----YVETIVAKCID----MYIETASETYKNPEQKSPIDQRLRDIVERMI 138 (929)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccCccc----hhhHHHHHHHH----HHHHHHHHHhcCccccCCCCHHHHHHHHHHH
Confidence 45677888999888754432 223455444 33333332222 12223333333111 1222222222344555
Q ss_pred HHHhcCCChHHHHHh---------hhc--CCCch--hHHHHHHHHHHhcCC-HHHHHHHHHHHHhc---CCCCcHHHHHH
Q 008265 199 QLCVNKPDVNLAIRY---------ACI--VPRAD--ILFCNFVREFGKKRD-LVSALRAYDASKKH---LSSPNMYICRT 261 (572)
Q Consensus 199 ~~~~~~g~~~~a~~~---------~~~--~~~~~--~~~~~li~~~~~~g~-~~~a~~~~~~m~~~---~~~~~~~~~~~ 261 (572)
..|...+++..|+.+ ++. ++.+. ...+.++..+..... -+--.+++..+.+. +..|| |-.
T Consensus 139 ~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD---y~~ 215 (929)
T KOG2062|consen 139 QKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD---YFS 215 (929)
T ss_pred HHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---eee
Confidence 555555555444332 111 22221 223333333333222 33333444444332 34555 455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 262 IIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 262 ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
+..+|.-..+.+.|.++++++.+.
T Consensus 216 vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 216 VCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeEEcCCHHHHHHHHHHHHhc
Confidence 677778888889999999888875
No 442
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.55 E-value=4.7e+02 Score=23.42 Aligned_cols=98 Identities=12% Similarity=0.138 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC---chhhH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 008265 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP---NTITW--SSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (572)
Q Consensus 359 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 433 (572)
+.+...-+|.|+--|.-...+.+|-+.|.. +.|+.| |..++ ..-|......|++++|.+....+...-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 456667777777777766667777666654 344544 33333 34566778999999999999988644344443
Q ss_pred HHHHHH----HHHHHHhCCHhHHHHHHHH
Q 008265 434 QCCNIL----LQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 434 ~~~~~l----i~~~~~~g~~~~A~~~~~~ 458 (572)
..+=.| +--..+.|..++|+++.+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222222 2235688889999998864
No 443
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.25 E-value=6.6e+02 Score=25.04 Aligned_cols=122 Identities=17% Similarity=0.100 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (572)
Q Consensus 288 ~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (572)
..+......++....|+...++.+++.+...+...+ .+...+++...... ...+...+.
T Consensus 173 ~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~-----~d~~~~~~~ 231 (413)
T PRK13342 173 ELDDEALDALARLANGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAAR-----YDKDGDEHY 231 (413)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhc-----cCCCccHHH
Confidence 455556666666666777777777776654311111 12222222221100 111112233
Q ss_pred HHHHHHHc---cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCCC
Q 008265 368 TIVKVFAD---AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL-----VEQAMHLFEEMLQAGCE 430 (572)
Q Consensus 368 ~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~~ 430 (572)
.++.++.+ ..+.+.|+..+..|.+.|..|....-..++.++-..|. ..-|...++....-|++
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 34444443 46788888888888888877776555555555444442 23344445555556643
No 444
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=26.21 E-value=2.1e+02 Score=19.35 Aligned_cols=47 Identities=28% Similarity=0.246 Sum_probs=22.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HHhCCHhHHHHH
Q 008265 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC-----VEACQFDRAFRL 455 (572)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~ 455 (572)
...|++-+|-++++++=...-.+....+..+|... .+.|+.+.|.++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34566666666666654322123344444444432 345555555554
No 445
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=25.91 E-value=4.3e+02 Score=26.77 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=10.8
Q ss_pred CCCHHHHHHHHHHHh
Q 008265 512 KPTTTTYNILMKACC 526 (572)
Q Consensus 512 ~p~~~~~~~ll~a~~ 526 (572)
..|-...|.++.+..
T Consensus 458 iADwpilNal~n~a~ 472 (545)
T TIGR01228 458 VSDWPLLNALLNTAA 472 (545)
T ss_pred hhhhHHHHHHHhhcc
Confidence 456777888888763
No 446
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.61 E-value=2.3e+02 Score=19.48 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH
Q 008265 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (572)
Q Consensus 359 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (572)
+.|....++-++..+++..-++.++..+.+..+.|. .+..+|---++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 346667788888888888888888888888888875 356666666666555
No 447
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=25.23 E-value=5.6e+02 Score=26.66 Aligned_cols=28 Identities=14% Similarity=-0.055 Sum_probs=18.0
Q ss_pred hhHHHHHHHhHhhc-CChhHHHHHHHHHH
Q 008265 71 NDYYADMASKLAKD-GRLEEFAMIVESVV 98 (572)
Q Consensus 71 ~~~~~~li~~~~~~-g~~~~A~~~~~~m~ 98 (572)
...+..+...|-+. |+..+|........
T Consensus 212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~ 240 (886)
T KOG4507|consen 212 SWVLHNMASFYWRIKGEPYQAVECAMRAL 240 (886)
T ss_pred hHHHHHHHHHHHHHcCChhhhhHHHHHHh
Confidence 45555666666554 88888877765544
No 448
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.09 E-value=3.6e+02 Score=22.85 Aligned_cols=61 Identities=10% Similarity=-0.008 Sum_probs=37.0
Q ss_pred HHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHh
Q 008265 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450 (572)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 450 (572)
++..|++.+..-. .++..+...++.-.|.++++.+.+.+..++..|.--.+..+...|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4555666544332 445555555566678888888887776666666555556666666543
No 449
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=24.87 E-value=3.6e+02 Score=21.47 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 170 EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (572)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 246 (572)
..+.+.++|..|...|+-..-. ..|......+...|++++|.++|..
T Consensus 78 ~~~~~~~if~~l~~~~IG~~~A------------------------------~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 78 LSSDPREIFKFLYSKGIGTKLA------------------------------LFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp TBSHHHHHHHHHHHHTTSTTBH------------------------------HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HccCHHHHHHHHHHcCccHHHH------------------------------HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3348899999998888765443 4555566666666777777766654
No 450
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.72 E-value=7.9e+02 Score=25.41 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHhh-cHHHHHHHHHHHHhCCCCCCHH
Q 008265 513 PTTTTYNILMKACCT-DYYRVKALMNEMRTVGLSPNHI 549 (572)
Q Consensus 513 p~~~~~~~ll~a~~~-~~~~a~~~~~~m~~~g~~p~~~ 549 (572)
++....-.+++++.. +++.+..++++|...|..|...
T Consensus 244 ~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 244 IEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 445555567777764 7899999999999999887543
No 451
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=24.65 E-value=1e+03 Score=26.56 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHc-C---C----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008265 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL-G---V----------MADMASYNILLKACCLAGNTVLAQEIYGEV 350 (572)
Q Consensus 285 ~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~-~---~----------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 350 (572)
.|+..+...+..++....|+...++..++++... + + ..+......++++.. .++...+..+++++
T Consensus 195 EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~-~~D~a~al~~l~~L 273 (824)
T PRK07764 195 EGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALA-AGDGAALFGTVDRV 273 (824)
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4565566666666666666666666666665421 0 1 112222334444444 45666666666666
Q ss_pred HH
Q 008265 351 KH 352 (572)
Q Consensus 351 ~~ 352 (572)
.+
T Consensus 274 i~ 275 (824)
T PRK07764 274 IE 275 (824)
T ss_pred HH
Confidence 54
No 452
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.40 E-value=1e+03 Score=26.56 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=41.3
Q ss_pred HHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc
Q 008265 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 74 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~ 142 (572)
+..-+..+....++++|..+-+..... .|......-....... ..-+...|++++|++.|.++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~--~p~~~~~i~~~~~l~~-a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSP--NPKEKRQISCIKILID-AFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCC--ChHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHhhccC
Confidence 667777777788888888888766654 3322111111111111 23467889999999999887665
No 453
>PF12522 UL73_N: Cytomegalovirus glycoprotein N terminal; InterPro: IPR021003 This domain family is found in viruses, and is approximately 30 amino acids in length. The signature is found in association with PF03554 from PFAM. This family is an envelope glycoprotein of (Human herpesvirus 5) [].
Probab=23.95 E-value=42 Score=17.80 Aligned_cols=12 Identities=50% Similarity=0.540 Sum_probs=5.7
Q ss_pred eeccCCCCCcch
Q 008265 3 VVFGSSSSSSSA 14 (572)
Q Consensus 3 ~~~~~~~s~~~~ 14 (572)
|+-+|+++++|.
T Consensus 8 v~~gSs~n~sST 19 (27)
T PF12522_consen 8 VAAGSSGNNSST 19 (27)
T ss_pred EEeccccCCccc
Confidence 444554444443
No 454
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=23.83 E-value=5.5e+02 Score=23.27 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=23.5
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVS 100 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 100 (572)
...+..++......+++..+.+.++.|--.
T Consensus 110 ~s~f~~lL~~~~~~~dy~~~~~~LkslsPS 139 (237)
T PF04192_consen 110 ESEFTRLLRSASESEDYSEFLEYLKSLSPS 139 (237)
T ss_pred cCHHHHHHHhhcccccHHHHHHHHHhCChh
Confidence 567788888888888999888888877443
No 455
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=23.74 E-value=1.3e+02 Score=16.08 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 008265 235 RDLVSALRAYDASKKHLSSPNMYICRTIID 264 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (572)
|+.+.|..+|+.+.... +-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 45566677777666542 234455554443
No 456
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.68 E-value=3.4e+02 Score=21.08 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=17.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHL 251 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~ 251 (572)
++++.+.++...++|+++++.|.++|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 35666666677777777777777665
No 457
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.57 E-value=1e+03 Score=26.28 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=25.7
Q ss_pred HHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 198 VQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (572)
Q Consensus 198 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 246 (572)
.+.+...|+.++...+-..+ ..|..++..+.+.+.+++|++++..
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~----~d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLI----KDYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444544444433222 3466677777777888777777654
No 458
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=23.46 E-value=7e+02 Score=24.35 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=31.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG-ICGDYMKSRAIYEDLR 283 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~ 283 (572)
-|..+.+.|.+.-|.++-+.+......-|....-.+|+.|+ ++++++-.+++.+...
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 35566666666666666666666544434444455555543 4455555555555443
No 459
>PRK09857 putative transposase; Provisional
Probab=23.20 E-value=6.3e+02 Score=23.75 Aligned_cols=55 Identities=5% Similarity=0.039 Sum_probs=24.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
.+.++.++..++++.+.+. .........++..-+.+.|.-+++.++.++|...|.
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344444444444444332 122222333444444444444555555666655554
No 460
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.00 E-value=5.1e+02 Score=26.06 Aligned_cols=112 Identities=9% Similarity=0.013 Sum_probs=65.6
Q ss_pred ChHHHHHhhhcCCCchhHHHHHHHH----------HHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 008265 206 DVNLAIRYACIVPRADILFCNFVRE----------FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (572)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~li~~----------~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 275 (572)
++++|..+.+.+|+.......|-.+ .+..+.+++-.++++.+.+.|- +| .....|++|.+.+++++|
T Consensus 29 d~~eav~y~k~~p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~n~y~~A 105 (480)
T TIGR01503 29 DLQDAVDYHKSIPAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEGG-AD--FLPSTIDAYTRQNRYDEA 105 (480)
T ss_pred CHHHHHHHHHhCCccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHccC-CC--ccceeeecccccccHHHH
Confidence 4556666666665543222222222 1223567788888888877642 22 445668889999999999
Q ss_pred HHHHHHHHhC------CCC---CCHHHHHHHHHHhc------CChHHHHHHHHHHHHcCC
Q 008265 276 RAIYEDLRSQ------NVT---LNIYVFNSLMNVNA------HDLKFTLEVYKNMQKLGV 320 (572)
Q Consensus 276 ~~~~~~m~~~------g~~---p~~~~~~~ll~~~~------~~~~~a~~~~~~m~~~~~ 320 (572)
..-+++-.+. |++ -...+...++.... .-...+..+++-+...|+
T Consensus 106 ~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtpDarlL~e~~~a~G~ 165 (480)
T TIGR01503 106 AVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTPDARLLAEIILAGGF 165 (480)
T ss_pred HHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCCcHHHHHHHHHHcCC
Confidence 9998887663 221 12334444555432 124456677777777665
No 461
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.09 E-value=1.9e+02 Score=22.35 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=29.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 272 (572)
++..+...+..-.|.++++.+.+.+...+..|---.|+.+.+.|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4445555556667777888887776666666655566666666643
No 462
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=22.01 E-value=3.2e+02 Score=19.91 Aligned_cols=34 Identities=6% Similarity=-0.137 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 008265 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 272 (572)
-..+.+.++++.+..+| ...|....+++...|..
T Consensus 44 tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 44 SRRDQARQLLIDLETRG----KQAFPAFLSALRETGQT 77 (84)
T ss_pred CHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCch
Confidence 34555555565555543 33455555555555543
No 463
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.89 E-value=9e+02 Score=25.02 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=18.1
Q ss_pred hCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008265 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (572)
Q Consensus 284 ~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~ 316 (572)
+.|+..+......++....|+...|+.+++++.
T Consensus 193 ~egi~~~~~al~~ia~~s~GslR~al~lLdq~i 225 (509)
T PRK14958 193 EENVEFENAALDLLARAANGSVRDALSLLDQSI 225 (509)
T ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 345555555555555555566666666555443
No 464
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.71 E-value=4.5e+02 Score=21.53 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 008265 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338 (572)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 338 (572)
-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 37 ~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 37 LSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred CCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 445555555555554444444444444444444
No 465
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.63 E-value=1.1e+03 Score=26.08 Aligned_cols=123 Identities=12% Similarity=0.026 Sum_probs=0.0
Q ss_pred hhhhCChhHHHHHHHHhhhc--CCCCcchhhhhhhHHHHHHHHHH------------hhhhhHHHHHHHHHHHHhCCCCC
Q 008265 123 SIREGRIDCVVGVLKKLNEL--GVAPLELFDGSGFKLLKNECQRL------------LDSGEVEMFVGLMEVLEEFRLPV 188 (572)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~~~~~l~~~~~~~------------~~~g~~~~a~~~~~~~~~~~~~~ 188 (572)
+...|++.+|++.|+...-. -+..|.........-++..|+.| ...+..+++.++-.-.....++|
T Consensus 1001 ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp 1080 (1202)
T KOG0292|consen 1001 LTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQP 1080 (1202)
T ss_pred hhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCc
Q ss_pred cccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 008265 189 KELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (572)
Q Consensus 189 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (572)
.-.. .+..+.+..+.+.+++..|-.+-.++++.+..|+...-..-+...+.
T Consensus 1081 ~H~i-----------------------------lalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~e 1131 (1202)
T KOG0292|consen 1081 MHRI-----------------------------LALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAE 1131 (1202)
T ss_pred HHHH-----------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Q ss_pred cCCHHH
Q 008265 269 CGDYMK 274 (572)
Q Consensus 269 ~g~~~~ 274 (572)
..-.|.
T Consensus 1132 knp~Da 1137 (1202)
T KOG0292|consen 1132 KNPTDA 1137 (1202)
T ss_pred cCcccc
No 466
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.53 E-value=1.8e+02 Score=22.36 Aligned_cols=83 Identities=8% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN-AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 445 (572)
..++..|...|+.++|..-+.++... -.-.......+-.++-+ ...-+....++..+.+.+.-+....-..+-..+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~ 84 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLES 84 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q ss_pred hCCHh
Q 008265 446 ACQFD 450 (572)
Q Consensus 446 ~g~~~ 450 (572)
..++.
T Consensus 85 l~Dl~ 89 (113)
T PF02847_consen 85 LEDLE 89 (113)
T ss_dssp HHHHH
T ss_pred hhhcc
No 467
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.29 E-value=9e+02 Score=24.78 Aligned_cols=45 Identities=9% Similarity=-0.052 Sum_probs=29.3
Q ss_pred HHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 306 KFTLEVYKNM-QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 306 ~~a~~~~~~m-~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
++..+.+... ...|+..+......++. ...|+...|..+++++..
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHH
Confidence 3344444444 34677777777766554 345889999999988654
No 468
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=21.24 E-value=9.2e+02 Score=24.92 Aligned_cols=88 Identities=13% Similarity=0.006 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------------CCCHHHHHHHHHH
Q 008265 236 DLVSALRAYDASKK-HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--------------TLNIYVFNSLMNV 300 (572)
Q Consensus 236 ~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--------------~p~~~~~~~ll~~ 300 (572)
+.+.....++.+.. .|+.-+...+..+.+ ...|...+++.+++++...|- .++......+...
T Consensus 179 ~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~~~~~~~~~~~~~i 256 (515)
T COG2812 179 DLEEIAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGLTDIEKLLSLLEAI 256 (515)
T ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHHccCCcccHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455555555543 467777666665554 567888889999988876641 1112222222223
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHH
Q 008265 301 NAHDLKFTLEVYKNMQKLGVMADMA 325 (572)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~ 325 (572)
..++...++..++++.+.|..|...
T Consensus 257 ~~~d~~~~~~~~~~l~~~G~~~~~~ 281 (515)
T COG2812 257 LKGDAKEALRLINELIEEGKDPEAF 281 (515)
T ss_pred HccCHHHHHHHHHHHHHhCcCHHHH
Confidence 4477888888888888888765443
No 469
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=21.10 E-value=8e+02 Score=24.15 Aligned_cols=55 Identities=11% Similarity=-0.046 Sum_probs=36.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHhc--CCHHHHHHHHHH
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYI----CRTIIDVCGIC--GDYMKSRAIYED 281 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~--g~~~~a~~~~~~ 281 (572)
.+..+.+.+++..|.++|+++.++.+++.... |..+..+|..- -++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34566678899999999999988765554433 33344444332 456788888875
No 470
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=21.03 E-value=1.1e+03 Score=25.75 Aligned_cols=51 Identities=22% Similarity=0.187 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHhh-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 008265 513 PTTTTYNILMKACCT-DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563 (572)
Q Consensus 513 p~~~~~~~ll~a~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 563 (572)
+...+-.++++.+.. +.+.|...+.+|.+.|..|....-..++.+.-.-|.
T Consensus 257 ~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigl 308 (725)
T PRK13341 257 AHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGL 308 (725)
T ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 455566677777665 789999999999999988877666666655544444
No 471
>PHA02940 hypothetical protein; Provisional
Probab=20.99 E-value=6.2e+02 Score=22.84 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=42.9
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (572)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 443 (572)
...++..|.+.++.++=..+-+++.+. -+| .+..--...+++.+.+-.+++.+..-.....||+.|..++
T Consensus 145 v~~la~~yvq~vk~d~r~~~a~~l~ke------Ls~--~~d~~enepdle~d~keie~~lE~~~dl~rGtY~vL~~al 214 (315)
T PHA02940 145 VILLAGRYVQDVKKDDRRTIANKLSKE------LSW--TIDYQENEPDLESDFKEIEEELEEKDDLSRGTYKVLKRAL 214 (315)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHhh------hhH--HHHHHhcCcchhhhHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 345666677777766655555555432 111 1222233345777777788888776667778999888764
No 472
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=20.81 E-value=3.6e+02 Score=21.74 Aligned_cols=38 Identities=11% Similarity=0.189 Sum_probs=25.7
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHH
Q 008265 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASML 111 (572)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 111 (572)
....++.+. ..|+..+++..++++...|.+|..+..-+
T Consensus 17 ~i~~l~~ai-~~~d~~~~l~~~~~l~~~G~d~~~~l~~L 54 (143)
T PF12169_consen 17 QIFELLDAI-LEGDAAEALELLNELLEQGKDPKQFLDDL 54 (143)
T ss_dssp HHHHHHHHH-HTT-HHHHHHHHHHHHHCT--HHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 344444433 57899999999999999999988655433
No 473
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.55 E-value=1.2e+02 Score=29.71 Aligned_cols=10 Identities=10% Similarity=0.428 Sum_probs=5.6
Q ss_pred eeccCCCCCc
Q 008265 3 VVFGSSSSSS 12 (572)
Q Consensus 3 ~~~~~~~s~~ 12 (572)
+||++.+...
T Consensus 211 l~W~~~g~~~ 220 (480)
T KOG2675|consen 211 LVWNKDGGAA 220 (480)
T ss_pred ceecCCCCcc
Confidence 5676665433
No 474
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=20.41 E-value=7.7e+02 Score=23.70 Aligned_cols=115 Identities=11% Similarity=0.057 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH------cCChHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccc
Q 008265 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCL------AGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAK 377 (572)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g 377 (572)
.++++.++++....+. |..+.....|.++-. .-+|.....+|+.+..+ .|+.+ +.|-- -+..+..
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~------apSPvV~LNRA-VAla~~~ 343 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA------APSPVVTLNRA-VALAMRE 343 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh------CCCCeEeehHH-HHHHHhh
Confidence 4567777887777665 788888877776642 23678888888888773 45544 34433 3445555
Q ss_pred cHHHHHHHHHHHHHCCCCCchhhH-HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 378 WWQMALKVKEDMLSAGVTPNTITW-SSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 378 ~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
..+.++.+.+-+...+---+...| ..-...+.+.|+.++|..-|++....
T Consensus 344 Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 344 GPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 677888888877765322233333 33455677889999999999988764
No 475
>PRK09857 putative transposase; Provisional
Probab=20.37 E-value=7.3e+02 Score=23.36 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=36.3
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 432 (572)
..++.-..+.++.++..++++.+.+. ........-++..-+.+.|.-+++.++..+|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444434555555556666555544 222333344555556666666667777777777776554
Done!