Query 008265
Match_columns 572
No_of_seqs 448 out of 3524
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 22:06:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.7E-34 1.2E-38 299.9 41.9 431 67-570 80-572 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8E-32 2.7E-36 282.1 37.2 406 83-570 65-538 (597)
3 4g26_A Pentatricopeptide repea 100.0 9.4E-31 3.2E-35 262.7 25.9 205 238-446 7-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 7.6E-31 2.6E-35 263.4 24.1 183 275-461 9-203 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 3.3E-22 1.1E-26 197.2 44.4 372 121-562 7-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 3.5E-22 1.2E-26 197.0 43.4 357 77-461 5-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 7E-19 2.4E-23 180.2 37.7 367 71-464 6-480 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.2E-18 7.6E-23 173.3 39.0 335 59-442 15-372 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 5.4E-18 1.9E-22 170.4 40.2 286 164-462 35-358 (450)
10 2gw1_A Mitochondrial precursor 99.8 4.2E-18 1.4E-22 174.3 35.8 366 114-549 7-483 (514)
11 3fp2_A TPR repeat-containing p 99.8 1.5E-16 5.2E-21 163.7 44.0 397 70-542 24-491 (537)
12 3fp2_A TPR repeat-containing p 99.8 1.6E-17 5.5E-22 171.1 33.6 394 113-570 25-484 (537)
13 3spa_A Mtrpol, DNA-directed RN 99.8 2.4E-19 8.3E-24 184.7 11.4 133 321-454 124-257 (1134)
14 3spa_A Mtrpol, DNA-directed RN 99.8 2.8E-19 9.7E-24 184.2 10.4 154 360-563 124-287 (1134)
15 3ieg_A DNAJ homolog subfamily 99.8 6.3E-15 2.2E-19 142.9 39.1 288 164-462 12-335 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 4.9E-15 1.7E-19 143.7 38.1 327 71-444 3-351 (359)
17 1fch_A Peroxisomal targeting s 99.7 9.8E-16 3.4E-20 149.4 27.6 283 169-459 39-356 (368)
18 3hym_B Cell division cycle pro 99.7 1.9E-14 6.5E-19 137.8 32.5 261 192-461 23-298 (330)
19 3hym_B Cell division cycle pro 99.7 1.4E-14 4.7E-19 138.8 30.4 278 165-449 32-321 (330)
20 1fch_A Peroxisomal targeting s 99.7 1.8E-15 6.1E-20 147.6 23.1 288 123-424 35-356 (368)
21 4eqf_A PEX5-related protein; a 99.7 5.5E-15 1.9E-19 144.0 25.4 258 192-458 66-352 (365)
22 2ooe_A Cleavage stimulation fa 99.7 6.8E-13 2.3E-17 136.0 40.7 373 62-461 5-453 (530)
23 3cv0_A Peroxisome targeting si 99.7 1.9E-14 6.4E-19 137.7 26.5 256 196-461 26-314 (327)
24 4eqf_A PEX5-related protein; a 99.7 8.7E-15 3E-19 142.6 24.0 252 205-463 45-311 (365)
25 1xi4_A Clathrin heavy chain; a 99.7 2E-12 6.9E-17 138.1 41.6 374 75-568 989-1375(1630)
26 1b89_A Protein (clathrin heavy 99.7 6.1E-16 2.1E-20 148.0 13.5 235 167-443 15-251 (449)
27 2xm6_A Protein corresponding t 99.7 1.4E-11 4.9E-16 124.9 46.4 350 71-463 39-433 (490)
28 3mkr_A Coatomer subunit epsilo 99.7 8.5E-14 2.9E-18 130.3 27.1 251 79-352 7-263 (291)
29 3mkr_A Coatomer subunit epsilo 99.6 9E-14 3.1E-18 130.1 26.2 219 227-463 40-265 (291)
30 3cv0_A Peroxisome targeting si 99.6 2.3E-13 7.8E-18 130.1 24.7 251 164-424 30-312 (327)
31 4g1t_A Interferon-induced prot 99.6 1.7E-12 6E-17 131.0 31.7 372 70-467 50-464 (472)
32 1b89_A Protein (clathrin heavy 99.6 5.9E-15 2E-19 141.3 10.9 204 168-410 45-253 (449)
33 2xm6_A Protein corresponding t 99.6 2.7E-10 9.1E-15 115.5 44.1 300 126-461 56-395 (490)
34 2ooe_A Cleavage stimulation fa 99.5 6.8E-11 2.3E-15 121.1 39.2 380 59-463 35-493 (530)
35 4g1t_A Interferon-induced prot 99.5 2.8E-11 9.5E-16 122.1 34.3 296 154-461 53-400 (472)
36 1xi4_A Clathrin heavy chain; a 99.5 2.3E-10 7.8E-15 122.7 41.7 333 116-560 988-1326(1630)
37 3uq3_A Heat shock protein STI1 99.5 4.2E-12 1.5E-16 116.6 24.8 224 222-463 6-237 (258)
38 2pl2_A Hypothetical conserved 99.5 3.2E-12 1.1E-16 114.1 22.7 201 217-460 1-212 (217)
39 3uq3_A Heat shock protein STI1 99.5 1.2E-11 4.2E-16 113.4 24.7 192 222-427 39-236 (258)
40 2ho1_A Type 4 fimbrial biogene 99.4 1.6E-11 5.5E-16 112.4 22.6 202 67-285 33-238 (252)
41 1xnf_A Lipoprotein NLPI; TPR, 99.4 7E-12 2.4E-16 116.4 19.0 245 168-456 18-269 (275)
42 1ouv_A Conserved hypothetical 99.4 4.6E-10 1.6E-14 104.0 31.1 221 222-464 7-253 (273)
43 1xnf_A Lipoprotein NLPI; TPR, 99.4 5.5E-12 1.9E-16 117.1 17.3 256 120-421 12-269 (275)
44 2ho1_A Type 4 fimbrial biogene 99.4 1.1E-10 3.9E-15 106.7 25.8 198 222-427 38-238 (252)
45 2vq2_A PILW, putative fimbrial 99.4 3.2E-10 1.1E-14 101.4 27.7 199 222-427 9-211 (225)
46 2vq2_A PILW, putative fimbrial 99.4 1.7E-10 5.9E-15 103.2 25.5 205 189-402 6-219 (225)
47 1ouv_A Conserved hypothetical 99.4 3.3E-10 1.1E-14 105.0 28.1 218 192-428 7-252 (273)
48 2pl2_A Hypothetical conserved 99.4 4.1E-11 1.4E-15 106.9 21.0 192 188-389 2-211 (217)
49 2h6f_A Protein farnesyltransfe 99.4 1.5E-10 5.3E-15 111.9 25.5 240 194-444 100-364 (382)
50 2q7f_A YRRB protein; TPR, prot 99.4 7.7E-11 2.6E-15 107.0 21.4 199 222-462 24-222 (243)
51 2q7f_A YRRB protein; TPR, prot 99.4 7.9E-11 2.7E-15 107.0 21.0 196 191-427 23-222 (243)
52 3sf4_A G-protein-signaling mod 99.3 1.3E-10 4.3E-15 114.6 23.2 319 70-450 8-364 (406)
53 3u4t_A TPR repeat-containing p 99.3 1.3E-10 4.4E-15 107.7 21.9 232 224-463 6-251 (272)
54 4a1s_A PINS, partner of inscut 99.3 1.1E-10 3.8E-15 115.4 22.3 288 116-462 51-372 (411)
55 3u4t_A TPR repeat-containing p 99.3 3.5E-10 1.2E-14 104.7 24.1 185 163-352 11-207 (272)
56 2h6f_A Protein farnesyltransfe 99.3 2.9E-10 9.9E-15 110.0 23.9 231 222-463 98-349 (382)
57 3ro2_A PINS homolog, G-protein 99.3 2E-10 6.8E-15 109.8 22.1 295 71-426 5-331 (338)
58 3ro2_A PINS homolog, G-protein 99.3 4.8E-10 1.6E-14 107.1 24.0 288 117-462 9-332 (338)
59 4a1s_A PINS, partner of inscut 99.3 3.6E-10 1.2E-14 111.7 23.4 296 71-427 48-372 (411)
60 3sf4_A G-protein-signaling mod 99.3 2.2E-10 7.4E-15 112.9 21.4 271 164-462 18-336 (406)
61 3nf1_A KLC 1, kinesin light ch 99.3 4.8E-10 1.6E-14 105.9 20.9 239 222-461 28-306 (311)
62 3e4b_A ALGK; tetratricopeptide 99.3 4.3E-09 1.5E-13 105.0 28.4 346 76-463 8-388 (452)
63 3vtx_A MAMA; tetratricopeptide 99.2 2.8E-09 9.4E-14 92.1 22.7 166 219-392 3-170 (184)
64 3ulq_A Response regulator aspa 99.2 4E-09 1.4E-13 103.0 26.5 238 166-461 114-367 (383)
65 3nf1_A KLC 1, kinesin light ch 99.2 4.4E-10 1.5E-14 106.1 18.4 245 69-317 25-306 (311)
66 2ond_A Cleavage stimulation fa 99.2 1.8E-08 6.2E-13 95.1 29.4 182 238-427 81-270 (308)
67 3ulq_A Response regulator aspa 99.2 2.1E-09 7.1E-14 105.1 23.5 210 224-460 106-333 (383)
68 2ond_A Cleavage stimulation fa 99.2 1.5E-08 5E-13 95.7 28.3 217 238-463 33-271 (308)
69 3vtx_A MAMA; tetratricopeptide 99.2 6E-09 2.1E-13 90.0 23.3 167 255-462 4-170 (184)
70 4abn_A Tetratricopeptide repea 99.2 1.7E-09 5.8E-14 108.7 22.3 215 237-461 84-320 (474)
71 4abn_A Tetratricopeptide repea 99.2 7E-10 2.4E-14 111.5 19.5 215 168-424 81-318 (474)
72 4e6h_A MRNA 3'-END-processing 99.2 5.6E-07 1.9E-11 93.1 40.6 385 58-461 54-532 (679)
73 3q15_A PSP28, response regulat 99.2 3.4E-08 1.1E-12 96.3 30.2 209 222-462 142-365 (378)
74 4e6h_A MRNA 3'-END-processing 99.2 6.5E-07 2.2E-11 92.6 40.5 413 87-570 48-563 (679)
75 1hz4_A MALT regulatory protein 99.1 3.2E-08 1.1E-12 96.2 27.3 284 119-462 20-322 (373)
76 3e4b_A ALGK; tetratricopeptide 99.1 1.2E-07 3.9E-12 94.6 30.5 270 166-460 14-314 (452)
77 1hz4_A MALT regulatory protein 99.1 1.6E-07 5.5E-12 91.2 28.9 290 72-391 15-321 (373)
78 3as5_A MAMA; tetratricopeptide 99.1 3.2E-08 1.1E-12 85.1 21.2 134 323-463 41-174 (186)
79 3q15_A PSP28, response regulat 99.1 3E-08 1E-12 96.6 23.3 208 224-460 104-330 (378)
80 3as5_A MAMA; tetratricopeptide 99.0 4.6E-08 1.6E-12 84.1 21.0 164 222-426 9-172 (186)
81 3edt_B KLC 2, kinesin light ch 99.0 7.7E-09 2.6E-13 95.9 16.5 223 238-461 25-280 (283)
82 4gyw_A UDP-N-acetylglucosamine 99.0 3.4E-08 1.2E-12 103.4 22.3 130 324-460 43-172 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.0 2.8E-08 9.7E-13 104.0 21.2 164 221-425 9-172 (723)
84 3mv2_B Coatomer subunit epsilo 98.9 3.9E-07 1.3E-11 83.6 23.9 207 232-461 24-239 (310)
85 3edt_B KLC 2, kinesin light ch 98.9 1.5E-08 5.3E-13 93.9 15.2 159 82-249 12-197 (283)
86 3mv2_B Coatomer subunit epsilo 98.9 1.5E-07 5E-12 86.4 19.9 184 275-469 85-289 (310)
87 2fo7_A Synthetic consensus TPR 98.9 1.3E-07 4.4E-12 76.3 17.4 130 326-462 3-132 (136)
88 4i17_A Hypothetical protein; T 98.9 4.9E-07 1.7E-11 80.9 22.8 190 221-427 7-209 (228)
89 4i17_A Hypothetical protein; T 98.9 5.6E-07 1.9E-11 80.5 22.6 192 188-398 4-213 (228)
90 1qqe_A Vesicular transport pro 98.8 4.6E-07 1.6E-11 84.5 20.7 209 224-462 40-269 (292)
91 1qqe_A Vesicular transport pro 98.8 6.9E-07 2.3E-11 83.4 20.0 159 302-461 50-227 (292)
92 2yhc_A BAMD, UPF0169 lipoprote 98.7 3.3E-06 1.1E-10 75.3 21.3 194 71-286 4-214 (225)
93 3qky_A Outer membrane assembly 98.7 1.8E-06 6.2E-11 79.0 19.9 185 188-392 12-224 (261)
94 2fo7_A Synthetic consensus TPR 98.7 2E-06 6.9E-11 69.1 18.0 130 258-427 3-132 (136)
95 3qky_A Outer membrane assembly 98.7 1.5E-06 5.3E-11 79.5 18.9 194 323-570 14-254 (261)
96 2ifu_A Gamma-SNAP; membrane fu 98.6 3E-06 1E-10 79.7 18.8 96 168-284 4-104 (307)
97 2vsy_A XCC0866; transferase, g 98.6 1.8E-06 6.2E-11 89.0 18.4 151 269-428 2-158 (568)
98 2yhc_A BAMD, UPF0169 lipoprote 98.6 5.9E-06 2E-10 73.6 19.5 183 257-464 5-215 (225)
99 3urz_A Uncharacterized protein 98.6 1.3E-05 4.5E-10 70.3 20.9 111 330-448 10-137 (208)
100 3dra_A Protein farnesyltransfe 98.6 3.3E-05 1.1E-09 71.5 24.3 231 154-391 31-286 (306)
101 2pzi_A Probable serine/threoni 98.5 1.9E-06 6.5E-11 90.5 17.8 152 301-461 403-562 (681)
102 3urz_A Uncharacterized protein 98.5 5.2E-06 1.8E-10 72.9 18.0 178 258-461 6-185 (208)
103 2r5s_A Uncharacterized protein 98.5 1.2E-06 4E-11 74.8 13.1 156 224-389 9-170 (176)
104 3qou_A Protein YBBN; thioredox 98.5 5.1E-06 1.7E-10 77.1 17.9 164 255-459 116-281 (287)
105 3qou_A Protein YBBN; thioredox 98.5 3.3E-06 1.1E-10 78.4 16.5 163 218-390 114-282 (287)
106 2ifu_A Gamma-SNAP; membrane fu 98.5 2.3E-06 7.8E-11 80.4 15.4 133 326-460 78-222 (307)
107 3dra_A Protein farnesyltransfe 98.5 0.00012 4.1E-09 67.8 26.2 226 227-461 39-286 (306)
108 3rjv_A Putative SEL1 repeat pr 98.5 3.2E-05 1.1E-09 68.0 21.5 173 239-428 4-198 (212)
109 2pzi_A Probable serine/threoni 98.5 1.6E-06 5.6E-11 91.1 14.7 181 267-459 402-602 (681)
110 1a17_A Serine/threonine protei 98.4 1.4E-05 4.9E-10 66.8 17.4 131 324-461 13-145 (166)
111 2vsy_A XCC0866; transferase, g 98.4 8.3E-06 2.9E-10 84.0 18.8 151 235-393 3-158 (568)
112 2r5s_A Uncharacterized protein 98.4 6E-06 2E-10 70.3 14.7 154 194-351 9-171 (176)
113 4f3v_A ESX-1 secretion system 98.4 1.8E-05 6.2E-10 71.6 18.0 200 83-297 18-247 (282)
114 1na0_A Designed protein CTPR3; 98.4 2.2E-05 7.5E-10 61.8 17.0 116 324-446 9-124 (125)
115 4ga2_A E3 SUMO-protein ligase 98.4 1.9E-06 6.7E-11 71.1 10.5 135 304-447 12-148 (150)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.7E-05 5.8E-10 69.7 16.8 130 326-464 8-152 (213)
117 2uy1_A Cleavage stimulation fa 98.4 0.0012 4.2E-08 65.9 32.1 353 71-461 15-412 (493)
118 2vyi_A SGTA protein; chaperone 98.4 2.2E-05 7.6E-10 62.4 16.0 120 323-449 11-130 (131)
119 3rjv_A Putative SEL1 repeat pr 98.3 4.4E-05 1.5E-09 67.1 18.9 175 274-464 4-199 (212)
120 4ga2_A E3 SUMO-protein ligase 98.3 3.1E-06 1.1E-10 69.9 10.6 122 332-461 5-128 (150)
121 4gco_A Protein STI-1; structur 98.3 3.4E-05 1.1E-09 61.3 15.6 108 325-439 14-121 (126)
122 2qfc_A PLCR protein; TPR, HTH, 98.3 0.00012 4.2E-09 68.0 21.8 99 115-215 77-179 (293)
123 2lni_A Stress-induced-phosphop 98.3 2.3E-05 7.7E-10 62.7 14.6 119 322-447 14-132 (133)
124 3u3w_A Transcriptional activat 98.3 0.00014 4.8E-09 67.6 22.0 166 116-283 78-264 (293)
125 3gw4_A Uncharacterized protein 98.3 1.7E-05 5.9E-10 69.0 14.7 158 303-461 6-175 (203)
126 3gyz_A Chaperone protein IPGC; 98.3 2.7E-05 9.3E-10 64.0 14.8 103 324-434 36-138 (151)
127 3u3w_A Transcriptional activat 98.3 7.1E-05 2.4E-09 69.6 19.7 164 226-389 80-263 (293)
128 2c2l_A CHIP, carboxy terminus 98.3 0.00012 4E-09 67.6 20.3 194 222-463 5-200 (281)
129 1p5q_A FKBP52, FK506-binding p 98.2 1.9E-05 6.3E-10 75.2 15.2 131 323-461 146-293 (336)
130 2uy1_A Cleavage stimulation fa 98.2 0.0033 1.1E-07 62.8 31.9 324 113-459 15-380 (493)
131 1hh8_A P67PHOX, NCF-2, neutrop 98.2 8.8E-05 3E-09 65.1 18.2 70 323-392 70-150 (213)
132 2e2e_A Formate-dependent nitri 98.2 2E-05 6.9E-10 67.0 13.5 118 303-427 24-144 (177)
133 3gyz_A Chaperone protein IPGC; 98.2 2.5E-05 8.5E-10 64.2 13.2 100 362-463 35-134 (151)
134 2qfc_A PLCR protein; TPR, HTH, 98.2 0.00018 6.1E-09 66.9 20.5 123 303-425 129-264 (293)
135 4gco_A Protein STI-1; structur 98.2 7.5E-05 2.6E-09 59.3 15.3 102 359-462 8-110 (126)
136 3gw4_A Uncharacterized protein 98.2 6.1E-05 2.1E-09 65.4 15.7 156 233-390 4-174 (203)
137 1na0_A Designed protein CTPR3; 98.2 7.8E-05 2.7E-09 58.5 14.9 98 363-462 9-106 (125)
138 4f3v_A ESX-1 secretion system 98.2 0.0001 3.5E-09 66.7 17.0 183 233-427 18-237 (282)
139 2vgx_A Chaperone SYCD; alterna 98.1 1.8E-05 6.1E-10 65.0 10.3 95 365-461 23-117 (148)
140 3upv_A Heat shock protein STI1 98.1 0.00014 4.9E-09 57.5 15.5 98 324-427 4-101 (126)
141 1a17_A Serine/threonine protei 98.1 0.00026 8.8E-09 59.0 17.6 61 324-389 81-143 (166)
142 2e2e_A Formate-dependent nitri 98.1 3.3E-05 1.1E-09 65.6 12.0 122 335-463 21-145 (177)
143 4gcn_A Protein STI-1; structur 98.1 0.00011 3.8E-09 58.4 14.4 107 325-438 9-121 (127)
144 1elw_A TPR1-domain of HOP; HOP 98.1 0.00019 6.4E-09 55.6 15.3 98 324-427 4-101 (118)
145 1elr_A TPR2A-domain of HOP; HO 98.1 8.4E-05 2.9E-09 59.0 13.4 112 324-442 4-121 (131)
146 2vgx_A Chaperone SYCD; alterna 98.1 2.6E-05 9E-10 64.0 10.3 99 323-427 20-118 (148)
147 3q7a_A Farnesyltransferase alp 98.0 0.0021 7.1E-08 60.2 24.0 230 223-461 56-330 (349)
148 2dba_A Smooth muscle cell asso 98.0 0.00022 7.6E-09 58.0 14.9 99 322-427 26-128 (148)
149 2fbn_A 70 kDa peptidylprolyl i 98.0 0.0001 3.4E-09 63.9 13.4 50 200-249 13-66 (198)
150 2kck_A TPR repeat; tetratricop 98.0 6.7E-05 2.3E-09 57.6 11.1 99 363-463 6-107 (112)
151 3upv_A Heat shock protein STI1 98.0 0.00013 4.3E-09 57.9 12.9 99 363-463 4-102 (126)
152 3q49_B STIP1 homology and U bo 98.0 0.00042 1.4E-08 55.5 16.3 100 322-427 7-106 (137)
153 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00028 9.7E-09 58.9 15.6 99 323-427 10-108 (164)
154 2fbn_A 70 kDa peptidylprolyl i 98.0 0.00015 5.1E-09 62.8 14.3 136 324-461 38-185 (198)
155 3q7a_A Farnesyltransferase alp 98.0 0.0039 1.3E-07 58.4 24.2 198 222-427 89-331 (349)
156 3q49_B STIP1 homology and U bo 98.0 0.00021 7E-09 57.4 13.9 102 360-463 6-107 (137)
157 2xcb_A PCRH, regulatory protei 98.0 0.00012 4.3E-09 59.4 12.6 93 328-426 22-114 (142)
158 2vyi_A SGTA protein; chaperone 98.0 0.0004 1.4E-08 54.9 15.5 99 362-462 11-109 (131)
159 2c2l_A CHIP, carboxy terminus 98.0 0.00014 4.8E-09 67.0 14.4 92 193-285 6-101 (281)
160 1elw_A TPR1-domain of HOP; HOP 97.9 0.00047 1.6E-08 53.2 15.4 99 362-462 3-101 (118)
161 4b4t_Q 26S proteasome regulato 97.9 0.00062 2.1E-08 67.1 19.6 214 163-391 12-244 (434)
162 2xcb_A PCRH, regulatory protei 97.9 0.00021 7.1E-09 58.0 13.4 99 363-463 18-116 (142)
163 2lni_A Stress-induced-phosphop 97.9 0.00049 1.7E-08 54.6 15.5 95 256-352 16-112 (133)
164 2kck_A TPR repeat; tetratricop 97.9 0.00015 5E-09 55.7 11.9 98 188-285 3-106 (112)
165 4b4t_Q 26S proteasome regulato 97.9 0.0012 4E-08 65.1 21.3 199 228-426 11-244 (434)
166 3ro3_A PINS homolog, G-protein 97.9 0.00013 4.5E-09 60.3 12.4 137 325-461 10-157 (164)
167 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00017 6E-09 60.2 13.1 101 361-463 9-109 (164)
168 1p5q_A FKBP52, FK506-binding p 97.9 0.00052 1.8E-08 65.1 17.2 86 326-417 198-283 (336)
169 2dba_A Smooth muscle cell asso 97.8 0.00046 1.6E-08 56.1 14.2 101 360-463 25-129 (148)
170 4gcn_A Protein STI-1; structur 97.8 0.00033 1.1E-08 55.5 12.8 98 363-461 8-111 (127)
171 1hxi_A PEX5, peroxisome target 97.8 0.00023 7.9E-09 55.9 11.6 92 368-461 22-113 (121)
172 1elr_A TPR2A-domain of HOP; HO 97.8 0.00044 1.5E-08 54.7 13.3 98 363-461 4-107 (131)
173 1hxi_A PEX5, peroxisome target 97.8 0.00027 9.3E-09 55.5 11.5 95 327-427 20-114 (121)
174 2xev_A YBGF; tetratricopeptide 97.8 0.0006 2.1E-08 53.9 13.7 92 329-427 7-105 (129)
175 3ro3_A PINS homolog, G-protein 97.7 0.00047 1.6E-08 56.9 13.0 149 70-249 8-157 (164)
176 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00032 1.1E-08 69.7 13.6 132 323-461 267-414 (457)
177 1wao_1 Serine/threonine protei 97.7 0.00015 5.3E-09 72.3 10.8 120 332-458 14-135 (477)
178 1ihg_A Cyclophilin 40; ppiase 97.7 0.00083 2.8E-08 64.5 15.2 129 325-455 224-363 (370)
179 2xev_A YBGF; tetratricopeptide 97.7 0.00076 2.6E-08 53.3 12.6 94 367-463 6-106 (129)
180 3k9i_A BH0479 protein; putativ 97.7 0.0001 3.5E-09 57.6 7.1 83 377-460 4-88 (117)
181 3rkv_A Putative peptidylprolyl 97.7 0.0013 4.4E-08 54.6 14.3 103 324-427 11-126 (162)
182 3n71_A Histone lysine methyltr 97.6 0.00074 2.5E-08 67.1 14.0 136 120-285 316-464 (490)
183 2hr2_A Hypothetical protein; a 97.6 0.0026 8.9E-08 51.8 14.7 115 325-439 12-148 (159)
184 3n71_A Histone lysine methyltr 97.6 0.00062 2.1E-08 67.6 13.0 130 333-462 318-464 (490)
185 3k9i_A BH0479 protein; putativ 97.6 0.00025 8.4E-09 55.3 8.1 89 336-427 2-90 (117)
186 3dss_A Geranylgeranyl transfer 97.4 0.078 2.7E-06 49.3 27.6 180 237-427 90-304 (331)
187 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00033 1.1E-08 66.5 8.3 95 365-462 232-328 (338)
188 3rkv_A Putative peptidylprolyl 97.4 0.0016 5.5E-08 54.0 11.7 101 363-464 11-128 (162)
189 1wao_1 Serine/threonine protei 97.4 0.00067 2.3E-08 67.7 10.5 113 303-422 20-134 (477)
190 2hr2_A Hypothetical protein; a 97.3 0.0032 1.1E-07 51.3 11.9 99 363-463 11-132 (159)
191 3dss_A Geranylgeranyl transfer 97.3 0.1 3.6E-06 48.5 27.4 222 232-464 40-306 (331)
192 2l6j_A TPR repeat-containing p 97.2 0.00048 1.6E-08 52.7 5.8 91 363-456 4-101 (111)
193 1kt0_A FKBP51, 51 kDa FK506-bi 97.1 0.0079 2.7E-07 59.6 15.2 145 256-425 268-413 (457)
194 2if4_A ATFKBP42; FKBP-like, al 97.1 0.0017 5.8E-08 61.6 9.6 115 323-461 178-292 (338)
195 1na3_A Designed protein CTPR2; 97.0 0.0092 3.1E-07 43.3 11.2 79 364-444 10-88 (91)
196 1ihg_A Cyclophilin 40; ppiase 97.0 0.012 4.2E-07 56.3 14.4 90 324-419 273-362 (370)
197 1klx_A Cysteine rich protein B 96.9 0.03 1E-06 44.7 14.3 110 304-428 10-127 (138)
198 2kat_A Uncharacterized protein 96.9 0.0064 2.2E-07 46.8 10.0 79 342-426 3-81 (115)
199 2kat_A Uncharacterized protein 96.9 0.0091 3.1E-07 45.9 10.8 80 307-392 3-82 (115)
200 2l6j_A TPR repeat-containing p 96.9 0.0033 1.1E-07 47.9 8.1 88 323-417 3-97 (111)
201 1dce_A Protein (RAB geranylger 96.9 0.18 6E-06 51.3 22.8 173 336-566 40-244 (567)
202 1na3_A Designed protein CTPR2; 96.9 0.014 4.8E-07 42.3 11.1 81 324-410 9-89 (91)
203 1dce_A Protein (RAB geranylger 96.8 0.093 3.2E-06 53.3 20.0 151 305-463 45-222 (567)
204 1klx_A Cysteine rich protein B 96.7 0.061 2.1E-06 42.9 14.5 111 271-394 10-128 (138)
205 1zu2_A Mitochondrial import re 96.7 0.0085 2.9E-07 48.6 8.8 98 336-441 14-132 (158)
206 1zu2_A Mitochondrial import re 96.7 0.03 1E-06 45.4 12.0 110 304-427 17-147 (158)
207 3ma5_A Tetratricopeptide repea 96.7 0.011 3.8E-07 44.1 9.1 63 362-425 6-68 (100)
208 3ma5_A Tetratricopeptide repea 96.5 0.015 5E-07 43.4 9.0 64 220-284 6-69 (100)
209 3mkq_A Coatomer beta'-subunit; 96.3 0.1 3.5E-06 55.9 17.2 153 232-425 610-763 (814)
210 3qww_A SET and MYND domain-con 96.2 0.028 9.6E-07 54.7 11.2 89 337-425 311-409 (433)
211 3qwp_A SET and MYND domain-con 96.2 0.017 5.9E-07 56.3 9.6 102 76-183 292-399 (429)
212 3ly7_A Transcriptional activat 96.2 0.31 1.1E-05 45.6 17.3 47 153-201 195-243 (372)
213 3ly7_A Transcriptional activat 96.2 0.2 6.7E-06 47.0 15.8 72 322-401 275-346 (372)
214 3qww_A SET and MYND domain-con 96.1 0.012 4.1E-07 57.4 8.0 95 83-183 310-410 (433)
215 3qwp_A SET and MYND domain-con 96.1 0.057 1.9E-06 52.6 12.5 101 118-248 292-398 (429)
216 2kc7_A BFR218_protein; tetratr 95.9 0.026 9E-07 41.7 7.5 55 372-427 9-64 (99)
217 3mkq_A Coatomer beta'-subunit; 95.8 0.55 1.9E-05 50.1 20.1 76 195-283 633-708 (814)
218 3mkq_B Coatomer subunit alpha; 95.5 0.43 1.5E-05 39.3 13.6 125 301-459 17-141 (177)
219 2kc7_A BFR218_protein; tetratr 95.1 0.16 5.5E-06 37.2 9.2 58 330-392 6-64 (99)
220 3mkq_B Coatomer subunit alpha; 94.9 0.43 1.5E-05 39.3 11.9 98 168-282 18-115 (177)
221 1wy6_A Hypothetical protein ST 94.7 1.1 3.7E-05 34.7 15.0 138 234-395 20-157 (172)
222 3bee_A Putative YFRE protein; 94.6 0.58 2E-05 34.0 10.9 66 322-392 4-72 (93)
223 1pc2_A Mitochondria fission pr 94.4 0.26 9E-06 39.4 9.1 67 360-427 29-100 (152)
224 2v5f_A Prolyl 4-hydroxylase su 94.2 0.36 1.2E-05 36.0 9.3 64 222-285 6-75 (104)
225 3u64_A Protein TP_0956; tetrat 93.9 0.58 2E-05 42.0 11.1 79 221-299 199-285 (301)
226 1pc2_A Mitochondria fission pr 93.6 0.95 3.2E-05 36.2 10.9 84 378-463 13-101 (152)
227 2v5f_A Prolyl 4-hydroxylase su 93.6 0.76 2.6E-05 34.1 10.0 70 323-392 4-75 (104)
228 1wy6_A Hypothetical protein ST 93.3 1.2 4.2E-05 34.4 10.3 84 204-288 74-157 (172)
229 3bee_A Putative YFRE protein; 93.2 0.66 2.3E-05 33.7 8.8 66 361-427 4-72 (93)
230 4h7y_A Dual specificity protei 92.9 1.4 4.9E-05 34.8 10.6 112 323-441 12-136 (161)
231 3u64_A Protein TP_0956; tetrat 92.9 0.82 2.8E-05 41.0 10.4 81 307-395 181-272 (301)
232 4b4t_P 26S proteasome regulato 92.7 6.6 0.00022 38.2 17.9 56 85-142 30-85 (445)
233 2ff4_A Probable regulatory pro 92.0 3.4 0.00012 39.4 14.5 130 148-292 108-246 (388)
234 1qsa_A Protein (soluble lytic 91.9 12 0.00041 38.1 27.7 249 195-461 76-347 (618)
235 4gns_B Protein CSD3, chitin bi 91.0 2.7 9.2E-05 43.7 13.3 127 151-283 247-398 (754)
236 1nzn_A CGI-135 protein, fissio 89.7 3.3 0.00011 31.8 9.5 66 361-427 33-103 (126)
237 2ff4_A Probable regulatory pro 89.0 1.8 6.3E-05 41.3 9.7 60 401-461 174-233 (388)
238 1nzn_A CGI-135 protein, fissio 88.7 2.1 7.3E-05 32.9 7.9 92 371-464 9-105 (126)
239 4gns_B Protein CSD3, chitin bi 87.0 5.3 0.00018 41.5 12.1 126 260-390 252-398 (754)
240 4h7y_A Dual specificity protei 85.3 12 0.00043 29.6 11.9 92 130-254 36-127 (161)
241 1v54_E Cytochrome C oxidase po 84.6 6.3 0.00022 28.6 7.8 60 307-371 28-87 (109)
242 4ady_A RPN2, 26S proteasome re 82.0 58 0.002 34.8 23.2 152 227-391 496-657 (963)
243 1v54_E Cytochrome C oxidase po 79.7 15 0.00053 26.7 9.0 63 378-441 25-87 (109)
244 3o48_A Mitochondria fission 1 79.1 18 0.00063 27.9 9.2 74 67-149 36-112 (134)
245 4fhn_B Nucleoporin NUP120; pro 78.9 50 0.0017 36.6 16.7 190 196-389 817-1047(1139)
246 2y69_E Cytochrome C oxidase su 77.3 13 0.00046 28.6 7.8 60 307-371 71-130 (152)
247 4fhn_B Nucleoporin NUP120; pro 77.1 43 0.0015 37.1 15.5 170 223-414 814-987 (1139)
248 2p58_C Putative type III secre 76.1 17 0.00058 26.3 7.6 79 235-319 21-99 (116)
249 2y69_E Cytochrome C oxidase su 76.0 24 0.00082 27.3 8.8 61 380-441 70-130 (152)
250 3ffl_A Anaphase-promoting comp 75.7 20 0.00068 29.0 9.0 72 71-142 20-92 (167)
251 4b4t_R RPN7, 26S proteasome re 75.0 26 0.00087 33.8 11.6 95 223-317 133-236 (429)
252 3ffl_A Anaphase-promoting comp 74.6 12 0.00043 30.1 7.5 123 119-249 26-150 (167)
253 2uwj_G Type III export protein 73.9 16 0.00055 26.4 7.0 79 235-319 20-98 (115)
254 1y8m_A FIS1; mitochondria, unk 73.5 30 0.001 27.1 9.2 68 360-427 36-106 (144)
255 2uwj_G Type III export protein 72.6 24 0.00084 25.5 7.7 32 512-543 67-98 (115)
256 2p58_C Putative type III secre 72.3 25 0.00086 25.5 8.8 32 512-543 68-99 (116)
257 3o48_A Mitochondria fission 1 71.0 34 0.0012 26.4 10.5 66 396-461 38-106 (134)
258 4g8k_A 2-5A-dependent ribonucl 67.0 58 0.002 29.7 11.9 105 310-433 220-329 (337)
259 4b4t_R RPN7, 26S proteasome re 65.3 73 0.0025 30.6 12.4 99 326-426 133-236 (429)
260 1zbp_A Hypothetical protein VP 64.6 25 0.00086 31.0 7.9 56 371-427 5-60 (273)
261 3esl_A Checkpoint serine/threo 59.9 66 0.0023 26.9 9.3 73 359-432 73-149 (202)
262 3esl_A Checkpoint serine/threo 59.7 49 0.0017 27.7 8.4 57 170-256 94-150 (202)
263 2wpv_A GET4, UPF0363 protein Y 59.3 1E+02 0.0036 27.9 19.0 22 193-214 136-157 (312)
264 1wdy_A 2-5A-dependent ribonucl 58.7 16 0.00056 32.3 6.3 84 121-216 10-94 (285)
265 3eiq_C Programmed cell death p 58.6 1E+02 0.0035 28.6 11.4 24 367-390 221-244 (358)
266 3lpz_A GET4 (YOR164C homolog); 58.5 1.1E+02 0.0038 28.0 17.5 77 222-316 137-214 (336)
267 1zbp_A Hypothetical protein VP 58.3 58 0.002 28.8 9.0 119 331-462 4-129 (273)
268 3lpz_A GET4 (YOR164C homolog); 57.2 1.2E+02 0.004 27.9 21.6 165 223-426 37-215 (336)
269 4a1g_A Mitotic checkpoint seri 53.6 42 0.0014 26.7 6.8 55 172-256 82-136 (152)
270 4b4t_P 26S proteasome regulato 52.1 1.7E+02 0.0058 28.2 22.4 156 303-458 151-320 (445)
271 2nsz_A Programmed cell death p 51.3 80 0.0027 24.2 8.6 67 223-290 9-77 (129)
272 2wvi_A Mitotic checkpoint seri 51.0 46 0.0016 26.8 6.8 56 172-257 77-132 (164)
273 1wdy_A 2-5A-dependent ribonucl 48.5 46 0.0016 29.2 7.5 120 76-216 7-127 (285)
274 2ion_A PDCD4, programmed cell 46.6 71 0.0024 25.3 7.3 68 222-290 10-79 (152)
275 1zl8_A LIN-7; heterodimer, alp 45.9 49 0.0017 20.2 4.6 46 126-180 6-51 (53)
276 4aez_C MAD3, mitotic spindle c 42.0 62 0.0021 27.6 6.5 55 171-255 130-184 (223)
277 4a1g_A Mitotic checkpoint seri 40.7 1.3E+02 0.0046 23.7 8.8 50 382-431 84-134 (152)
278 3bu8_A Telomeric repeat-bindin 39.0 1.7E+02 0.0058 24.7 8.3 56 87-142 88-143 (235)
279 3hra_A Ankyrin repeat family p 37.7 21 0.00072 29.6 3.2 15 383-397 158-172 (201)
280 3lvg_A Clathrin heavy chain 1; 37.0 6.5 0.00022 38.2 -0.3 238 71-344 54-324 (624)
281 3lvg_A Clathrin heavy chain 1; 36.3 1.9 6.3E-05 41.8 -4.0 85 188-275 51-135 (624)
282 2wvi_A Mitotic checkpoint seri 35.6 1.7E+02 0.0059 23.5 8.8 53 381-433 78-131 (164)
283 3mv2_A Coatomer subunit alpha; 34.2 2.7E+02 0.0092 25.3 11.6 152 143-321 103-259 (325)
284 2wpv_A GET4, UPF0363 protein Y 33.7 2.7E+02 0.0092 25.2 24.1 175 203-425 25-215 (312)
285 1k1a_A B-cell lymphoma 3-encod 33.6 2.1E+02 0.0071 24.0 9.2 28 77-104 12-39 (241)
286 2zu6_B Programmed cell death p 33.2 2.7E+02 0.0093 25.1 14.1 28 73-100 5-32 (307)
287 3txn_A 26S proteasome regulato 32.1 3.3E+02 0.011 25.7 26.8 178 71-282 19-207 (394)
288 1k1a_A B-cell lymphoma 3-encod 31.7 1.6E+02 0.0056 24.7 8.2 27 122-148 15-41 (241)
289 2f6m_A Suppressor protein STP2 31.2 1.1E+02 0.0038 20.0 4.9 49 401-450 5-53 (65)
290 2ion_A PDCD4, programmed cell 30.9 2E+02 0.0067 22.7 8.3 34 222-255 44-79 (152)
291 2keb_A DNA polymerase subunit 27.1 1.8E+02 0.006 21.0 6.8 57 381-439 27-88 (101)
292 3ljn_A Hypothetical protein; a 26.9 57 0.0019 30.2 4.4 22 266-287 91-112 (364)
293 4ady_A RPN2, 26S proteasome re 26.5 6.3E+02 0.021 27.1 28.9 101 113-217 145-256 (963)
294 1wgl_A TOLL-interacting protei 25.7 98 0.0033 19.8 3.9 30 290-319 24-53 (59)
295 4aez_C MAD3, mitotic spindle c 25.7 2.1E+02 0.0072 24.3 7.1 52 380-431 131-183 (223)
296 4gq2_M Nucleoporin NUP120; bet 25.4 4.5E+02 0.015 28.3 11.5 50 197-246 816-865 (950)
297 1n11_A Ankyrin; clathrin, BAND 25.3 2.3E+02 0.0078 26.8 8.6 12 202-213 154-165 (437)
298 2rfa_A Transient receptor pote 24.8 2.7E+02 0.0091 23.2 8.2 24 264-287 159-182 (232)
299 1ug3_A EIF4GI, eukaryotic prot 24.8 2.5E+02 0.0084 25.8 8.2 15 515-529 272-286 (339)
300 1q02_A Sequestosome 1; helical 23.6 1.4E+02 0.0047 18.5 4.3 33 279-311 14-46 (52)
301 3kea_A K1L; tropism, ANK repea 23.1 3.8E+02 0.013 23.4 10.8 51 196-246 131-183 (285)
302 3eiq_C Programmed cell death p 23.0 4.5E+02 0.015 24.3 16.2 70 223-293 219-290 (358)
303 3us6_A Histidine-containing ph 22.7 2.8E+02 0.0097 21.8 8.5 21 370-390 100-120 (153)
304 3jxi_A Vanilloid receptor-rela 22.5 74 0.0025 27.5 4.1 29 77-105 8-36 (260)
305 2nsz_A Programmed cell death p 22.0 2.6E+02 0.009 21.2 9.9 60 197-256 13-78 (129)
306 3hra_A Ankyrin repeat family p 20.9 3.3E+02 0.011 21.9 8.0 15 123-137 12-26 (201)
307 3eu9_A Huntingtin-interacting 20.7 64 0.0022 27.3 3.2 12 168-179 19-30 (240)
308 1y8m_A FIS1; mitochondria, unk 20.6 3.1E+02 0.011 21.4 13.0 71 320-397 35-109 (144)
309 1qsa_A Protein (soluble lytic 20.5 6.7E+02 0.023 25.3 27.8 57 75-143 76-132 (618)
310 3ygs_P Procaspase 9; apoptosis 20.1 2.4E+02 0.0083 20.1 5.9 30 207-236 53-83 (97)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-34 Score=299.90 Aligned_cols=431 Identities=11% Similarity=-0.035 Sum_probs=355.5
Q ss_pred CchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCC
Q 008265 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (572)
Q Consensus 67 p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p 146 (572)
|.++...|+.++..+.+.|++++|+.+|++|....+++ ..+..+...|.+.|++++|+.+|+++... .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 148 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP---------NDAFWLAQVYCCTGDYARAKCLLTKEDLY--NR 148 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH---------HHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GT
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc---------hHHHHHHHHHHHcCcHHHHHHHHHHHhcc--cc
Confidence 44567889999999999999999999999999764432 23455788899999999999999998654 33
Q ss_pred cchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCC--------------CCCcccchHHHHHHHHhcCCChHHHHH
Q 008265 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR--------------LPVKELDEEFRIVQLCVNKPDVNLAIR 212 (572)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~ll~~~~~~g~~~~a~~ 212 (572)
+.. .+..+..++ .+.|++++|+.+|+++.... -.+.+..+|+.++.+|.+.|++++|++
T Consensus 149 ~~~----~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 149 SSA----CRYLAAFCL---VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp CHH----HHHHHHHHH---HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chh----HHHHHHHHH---HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 333 455555544 44899999999998532211 012346789999999999999999999
Q ss_pred hhhcC----CCchhHH--------------------------------------HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008265 213 YACIV----PRADILF--------------------------------------CNFVREFGKKRDLVSALRAYDASKKH 250 (572)
Q Consensus 213 ~~~~~----~~~~~~~--------------------------------------~~li~~~~~~g~~~~a~~~~~~m~~~ 250 (572)
+|+.+ |.....+ +.++..|.+.|++++|.++|+.+.+.
T Consensus 222 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 222 CYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 99886 3332332 22356677889999999999998875
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHH
Q 008265 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYN 328 (572)
Q Consensus 251 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~ 328 (572)
.++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.++. |++++|..+++++.+.. +.+..+++
T Consensus 302 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 377 (597)
T 2xpi_A 302 --EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWL 377 (597)
T ss_dssp --GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHH
T ss_pred --CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 4789999999999999999999999999999765 236677888877755 89999999999998654 34788999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHH
Q 008265 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (572)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 408 (572)
.++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|+++|+++.+.+. .+..+|+.++.+|
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTM-----DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 9999999999999999999999874 245688999999999999999999999999998743 3788999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccc
Q 008265 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488 (572)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (572)
.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+..
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------- 505 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV------------------------- 505 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-------------------------
Confidence 99999999999999999864 5578999999999999999999999999987532
Q ss_pred cccCCCCcccCCccchhhhhcCCCCC--HHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCc
Q 008265 489 SITNTPNFVPNSHYSSFDKRFSFKPT--TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564 (572)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 564 (572)
...+..|+ ..+|..+..+|.+ +.++|.++++++.+.+ +.+..+|..+..+|.+.|++
T Consensus 506 ------------------~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 506 ------------------KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp ------------------HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCH
T ss_pred ------------------hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCH
Confidence 12245677 7899999999987 6789999999998854 34788999999999999999
Q ss_pred cccccc
Q 008265 565 EGALQC 570 (572)
Q Consensus 565 ~~a~~~ 570 (572)
++|.++
T Consensus 567 ~~A~~~ 572 (597)
T 2xpi_A 567 GLAITH 572 (597)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8e-32 Score=282.13 Aligned_cols=406 Identities=9% Similarity=-0.010 Sum_probs=329.5
Q ss_pred hcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHH
Q 008265 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNEC 162 (572)
Q Consensus 83 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~ 162 (572)
..|....+...+..+... + ...+..++..+.+.|++++|+.+|++|... .|+.. .+..+..++
T Consensus 65 ~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~----~~~~l~~~~ 127 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLS----R-------EDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPN----DAFWLAQVY 127 (597)
T ss_dssp -----------------C----H-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHH----HHHHHHHHH
T ss_pred ccCccCCCCCccccchHH----H-------HHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCch----HHHHHHHHH
Confidence 445555565555544321 1 455778888999999999999999999864 56543 444455544
Q ss_pred HHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhc-CCCc-------------------hh
Q 008265 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI-VPRA-------------------DI 222 (572)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~-------------------~~ 222 (572)
. +.|++++|+.+|+.+... +.+..+++.++.+|.+.|++++|+++|+. ++.. ..
T Consensus 128 ~---~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (597)
T 2xpi_A 128 C---CTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS 201 (597)
T ss_dssp H---HTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHH
T ss_pred H---HcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHH
Confidence 4 479999999999988643 55678899999999999999999999994 4544 57
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHH--------------------------------------HHHH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICR--------------------------------------TIID 264 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--------------------------------------~ll~ 264 (572)
+|+.++.+|.+.|++++|.++|++|.+.+.. +...+. .++.
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH
Confidence 8999999999999999999999999886532 233332 3355
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 008265 265 VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342 (572)
Q Consensus 265 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 342 (572)
.|.+.|++++|.++|+++.+. +++..+|+.++.++. |++++|+.+|+++.+.+.. +..++..++.+|.+.|++++
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHH
T ss_pred HHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHH
Confidence 677889999999999999876 578999999988765 8999999999999987644 77889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 008265 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (572)
Q Consensus 343 a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 422 (572)
|..+++++.+. .+.+..+|+.++..|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+
T Consensus 358 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 358 LYLISNDLVDR-----HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp HHHHHHHHHHH-----CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhh-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999863 256788999999999999999999999999987532 367899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCcc
Q 008265 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502 (572)
Q Consensus 423 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (572)
++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 432 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------------------------------- 471 (597)
T 2xpi_A 432 TAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--------------------------------------- 471 (597)
T ss_dssp HHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------------------------------
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------
Confidence 999874 5578999999999999999999999999987532
Q ss_pred chhhhhcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHccCCccccccc
Q 008265 503 SSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV----GLSPN--HISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
..+..+|+.+...|.+ +.++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|+++
T Consensus 472 ---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 472 ---------QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp ---------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3478899999999987 679999999999876 77888 78999999999999999999764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=9.4e-31 Score=262.75 Aligned_cols=205 Identities=15% Similarity=0.233 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC-----------Ch
Q 008265 238 VSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----------DL 305 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-----------~~ 305 (572)
..+..+...+.+.+..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..+||++|.+|+. +.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 345556677777666544 346888999999999999999999999999999999999999998762 26
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHH
Q 008265 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (572)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (572)
+.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+ .| +.||..+|+++|.+|++.|++++|.++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~---~g-~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA---FG-IQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TT-CCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cC-CCCccceehHHHHHHHHCCCHHHHHHH
Confidence 88999999999999999999999999999999999999999999987 55 899999999999999999999999999
Q ss_pred HHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 008265 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (572)
Q Consensus 386 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 446 (572)
|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|...
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999998764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=7.6e-31 Score=263.42 Aligned_cols=183 Identities=15% Similarity=0.254 Sum_probs=92.3
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------hHH
Q 008265 275 SRAIYEDLRSQNVTLNI-YVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN---------TVL 342 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~~-~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---------~~~ 342 (572)
+..+.+++.++++.+.. ..++.+|.+|+ |++++|+++|++|.+.|+.||..||++||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444445444443322 23455555544 4555555555555555555555555555555555554 344
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 008265 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (572)
Q Consensus 343 a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 422 (572)
|.++|++|.. .| +.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|+
T Consensus 89 A~~lf~~M~~---~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 89 GFDIFKQMIV---DK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHH---TT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH---hC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 5555555553 33 4555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 423 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+|.+.|+.||..||++||.+|++.|++++|.++|++|++
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555543
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=3.3e-22 Score=197.22 Aligned_cols=372 Identities=12% Similarity=0.050 Sum_probs=306.2
Q ss_pred HhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 008265 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (572)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 200 (572)
..+.+.|++++|+..+.++.+. .|+... .+..+.. .+...|++++|...++...+. .|.+...|..+...
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~---~~~~l~~---~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTG---VLLLLSS---IHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHH---HHHHHHH---HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHH---HHHHHHH---HHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHH
Confidence 4567899999999999998876 465431 2222222 234479999999999988764 46777889999999
Q ss_pred HhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 008265 201 CVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (572)
Q Consensus 201 ~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 276 (572)
+.+.|++++|+..|+.+ |.....+..+...+.+.|++++|.+.|+.+.+..+. +...+..+...+...|++++|.
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 99999999999998874 555678999999999999999999999999886432 4567788888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008265 277 AIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (572)
Q Consensus 277 ~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 354 (572)
+.|+++.+.. +-+..+|..+...+. |++++|...|+++.+.+.. +...+..+...+...|++++|...|++....
T Consensus 156 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~- 232 (388)
T 1w3b_A 156 ACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL- 232 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 9999998763 234667777766654 7999999999999987543 6778899999999999999999999999874
Q ss_pred HhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 008265 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (572)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 434 (572)
.+.+..++..+...|.+.|++++|++.|+++.+.+.. +..+|..+..++.+.|++++|.+.++++.+.. +.+..
T Consensus 233 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 306 (388)
T 1w3b_A 233 ----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHAD 306 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHH
Confidence 1345789999999999999999999999999987432 56789999999999999999999999999874 66889
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCC
Q 008265 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (572)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (572)
++..+...+.+.|++++|.+.++++.+.. ..+
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------------------------------p~~ 338 (388)
T 1w3b_A 307 SLNNLANIKREQGNIEEAVRLYRKALEVF------------------------------------------------PEF 338 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTTSC------------------------------------------------TTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------------------------------------CCc
Confidence 99999999999999999999999886521 335
Q ss_pred HHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccC
Q 008265 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN-HISWTILIDACGGSG 562 (572)
Q Consensus 515 ~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 562 (572)
..+|..+...+.+ +.++|...++++.+ +.|+ ...|..+...+...|
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 7788889888886 56899999999987 4565 567777777776655
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=3.5e-22 Score=197.00 Aligned_cols=357 Identities=13% Similarity=0.055 Sum_probs=293.5
Q ss_pred HHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhH
Q 008265 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (572)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~ 156 (572)
+...+.+.|++++|++.++.+.+..+ +. ...+..+...+...|++++|...++...+. .|+. ...+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~---~~~~~ 71 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP--DN------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLL---AEAYS 71 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT--TC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC---HHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc---hHHHH
Confidence 34567788999999999999988744 32 223444556678899999999999988876 3432 12344
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHH
Q 008265 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFG 232 (572)
Q Consensus 157 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~ 232 (572)
.+..+ +.+.|++++|+..|+++.+. .|+....|..+..++...|++++|.+.++.+ |.....+..+...+.
T Consensus 72 ~lg~~---~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 72 NLGNV---YKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHH---HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHH---HHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44443 34479999999999999874 5777778999999999999999999988774 555678888999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHH
Q 008265 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLE 310 (572)
Q Consensus 233 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~ 310 (572)
..|++++|.++|+.+.+... .+..+|..+...+.+.|++++|...|+++.+.+ +-+...|..+-..+ .+++++|..
T Consensus 147 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~ 224 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988642 357899999999999999999999999998863 22345555555544 379999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.+.+..+.... +..++..+...|.+.|++++|...|+++.+. .+.+..+|..+...+.+.|++++|++.|+++.
T Consensus 225 ~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 225 AYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----QPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999876433 6788999999999999999999999999873 13356789999999999999999999999998
Q ss_pred HCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 391 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+.. +.+..+|..+...+.+.|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.|+++.+
T Consensus 299 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred hhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 874 3477899999999999999999999999998763 45678999999999999999999999999875
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=7e-19 Score=180.15 Aligned_cols=367 Identities=12% Similarity=-0.006 Sum_probs=281.4
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...+......+.+.|++++|+..|+++.+..++ ..++..+...+...|++++|+..++++.+. .|+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~- 73 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKED---------PVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYS- 73 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCH-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc---------HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHH-
Confidence 456777778888888888888888888887543 334556667788888888888888888776 34421
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCC-------------------------------------------
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP------------------------------------------- 187 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~------------------------------------------- 187 (572)
..+..+.. .+.+.|++++|+..|+.+.+.+..
T Consensus 74 --~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 148 (514)
T 2gw1_A 74 --KVLLRRAS---ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA 148 (514)
T ss_dssp --HHHHHHHH---HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred --HHHHHHHH---HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence 13333333 334478888888888887665421
Q ss_pred ----------------------------------CcccchHHHHHHHHh---cCCChHHHHHhhhcCCC-----------
Q 008265 188 ----------------------------------VKELDEEFRIVQLCV---NKPDVNLAIRYACIVPR----------- 219 (572)
Q Consensus 188 ----------------------------------~~~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~----------- 219 (572)
|.+...+......+. +.|++++|+.+++.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred hHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence 111222233333333 38999999998876432
Q ss_pred -------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008265 220 -------ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292 (572)
Q Consensus 220 -------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 292 (572)
...++..+...+...|++++|...|+.+.+.... ...|..+...+...|++++|...|+++.+.. +.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 305 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSS 305 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTH
T ss_pred ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHH
Confidence 2367888999999999999999999999886544 8889999999999999999999999998763 22445
Q ss_pred HHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 293 VFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (572)
Q Consensus 293 ~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li 370 (572)
.+..+...+ .|++++|...++++.+.... +...+..+...+...|++++|...++.+.+. .+.+...+..+.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la 379 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK-----FPEAPEVPNFFA 379 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-----STTCSHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cccCHHHHHHHH
Confidence 555555543 48999999999999886544 5678888999999999999999999999874 234567889999
Q ss_pred HHHHccccHHHHHHHHHHHHHCCCC-Cc----hhhHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 371 KVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACAN---AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (572)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 442 (572)
..|.+.|++++|...++++.+.... ++ ...|..+...+.. .|++++|...++++.+.. +.+..++..+...
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 458 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 9999999999999999998765221 11 2378899999999 999999999999998864 4567888999999
Q ss_pred HHHhCCHhHHHHHHHHhhhccc
Q 008265 443 CVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
+.+.|++++|.+.|++..+...
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHhcCHHHHHHHHHHHHHhcc
Confidence 9999999999999999876543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=2.2e-18 Score=173.30 Aligned_cols=335 Identities=12% Similarity=0.037 Sum_probs=241.3
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (572)
+.+.+..+|.. ...+..+...+.+.|++++|+.+|+.+.+..+. . ..++..+...+...|++++|+..|++
T Consensus 15 ~~~~~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 15 TENLYFQSMAD-VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--N------YIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp --------CHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--c------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555655 789999999999999999999999999987432 1 44566677788999999999999999
Q ss_pred hhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCccc---chHHHHHHHHhcCCChHHHHHhhh
Q 008265 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL---DEEFRIVQLCVNKPDVNLAIRYAC 215 (572)
Q Consensus 139 m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~ 215 (572)
+.+.+ |+.. ..+..+..+ +.+.|++++|+..|+++.+. .|.+. ..+..+...+..
T Consensus 86 al~~~--p~~~---~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~------------ 143 (450)
T 2y4t_A 86 VIQLK--MDFT---AARLQRGHL---LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM------------ 143 (450)
T ss_dssp HHHHC--TTCH---HHHHHHHHH---HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH------------
T ss_pred HHhcC--CCcH---HHHHHHHHH---HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH------------
Confidence 98873 4321 233333333 34589999999999999874 35544 455555443211
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (572)
Q Consensus 216 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 295 (572)
..+..+...+.+.|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|.+.|+++.+.. +.+...|.
T Consensus 144 ------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 144 ------QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 223345566777788888888888877653 2366777888888888888888888888877642 23456666
Q ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHHHHhCCCCC
Q 008265 296 SLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNIL------------LKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (572)
Q Consensus 296 ~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 361 (572)
.+...+. |++++|+..|+++.+.... +...+..+ ...|.+.|++++|...|+++.+. .|
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------~p 288 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT------EP 288 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC
Confidence 6655543 7788888888887765322 33444443 78899999999999999999873 34
Q ss_pred C-----HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHH
Q 008265 362 D-----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-NSQC 435 (572)
Q Consensus 362 ~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~ 435 (572)
+ ...|..+...+.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|...++++.+. .| +...
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 365 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQI 365 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHH
Confidence 4 4578889999999999999999999988763 236788999999999999999999999999875 44 4555
Q ss_pred HHHHHHH
Q 008265 436 CNILLQA 442 (572)
Q Consensus 436 ~~~li~~ 442 (572)
+..+..+
T Consensus 366 ~~~l~~~ 372 (450)
T 2y4t_A 366 REGLEKA 372 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555533
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=5.4e-18 Score=170.45 Aligned_cols=286 Identities=12% Similarity=0.043 Sum_probs=238.8
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHH
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 239 (572)
.+.+.|++++|+.+|+.+.+. .|.+...|..+..++...|++++|+..|+.+ |.....+..+...|.+.|++++
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 445589999999999999875 4667788999999999999999999998874 5566889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcH---HHHHHHH------------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--c
Q 008265 240 ALRAYDASKKHLSSPNM---YICRTII------------DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--A 302 (572)
Q Consensus 240 a~~~~~~m~~~~~~~~~---~~~~~ll------------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~ 302 (572)
|.+.|+.+.+... .+. ..+..+. ..+.+.|++++|...|+++.+.. +.+...+..+..++ .
T Consensus 113 A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 113 AEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC
Confidence 9999999988532 233 5555553 44899999999999999998763 33566677776665 4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHH------------H
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI------------V 370 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l------------i 370 (572)
|++++|...|+++.+... .+..++..+...|...|++++|...|+++... .+.+...+..+ .
T Consensus 191 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~ 264 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESA 264 (450)
T ss_dssp TCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999987643 36889999999999999999999999999874 13344455554 7
Q ss_pred HHHHccccHHHHHHHHHHHHHCCCCCc-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008265 371 KVFADAKWWQMALKVKEDMLSAGVTPN-----TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (572)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 445 (572)
..|.+.|++++|++.|+++.+. .|+ ...|..+..++.+.|++++|...++++.+.. +.+..+|..+..+|..
T Consensus 265 ~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 341 (450)
T 2y4t_A 265 EELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLI 341 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 8899999999999999999886 444 3478889999999999999999999998763 4478999999999999
Q ss_pred hCCHhHHHHHHHHhhhc
Q 008265 446 ACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 446 ~g~~~~A~~~~~~m~~~ 462 (572)
.|++++|.+.|++..+.
T Consensus 342 ~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 342 EEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 99999999999998764
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.2e-18 Score=174.34 Aligned_cols=366 Identities=8% Similarity=-0.069 Sum_probs=278.8
Q ss_pred HHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccch
Q 008265 114 EMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDE 193 (572)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 193 (572)
..+......+.+.|++++|+..|+++.+.. |+.. .+..+..++ .+.|++++|+..++.+.+. .|.+...
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~----~~~~la~~~---~~~g~~~~A~~~~~~al~~--~p~~~~~ 75 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPV----FYSNLSACY---VSVGDLKKVVEMSTKALEL--KPDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHH----HHHHHHHHH---HHHTCHHHHHHHHHHHHHH--CSCCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHH----HHHhHHHHH---HHHhhHHHHHHHHHHHhcc--ChHHHHH
Confidence 345555667889999999999999999974 6533 343344433 3479999999999999875 4777788
Q ss_pred HHHHHHHHhcCCChHHHHHhhhcC----CCc-------------------------------------------------
Q 008265 194 EFRIVQLCVNKPDVNLAIRYACIV----PRA------------------------------------------------- 220 (572)
Q Consensus 194 ~~~ll~~~~~~g~~~~a~~~~~~~----~~~------------------------------------------------- 220 (572)
+..+..++...|++++|...|+.+ +.+
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 999999999999999999988654 111
Q ss_pred ------------------------------hhHHHHHHHHHH---hcCCHHHHHHHHHHHHh-----c--CC------CC
Q 008265 221 ------------------------------DILFCNFVREFG---KKRDLVSALRAYDASKK-----H--LS------SP 254 (572)
Q Consensus 221 ------------------------------~~~~~~li~~~~---~~g~~~~a~~~~~~m~~-----~--~~------~~ 254 (572)
...+......+. +.|++++|..+|+.+.+ . .. +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 122222333333 38999999999998877 2 11 12
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLK 332 (572)
Q Consensus 255 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 332 (572)
+...+..+...+...|++++|...|+++.+.. |+...+..+..++ .|++++|...++++.+.... +...+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHH
Confidence 35678888899999999999999999998764 3455565555554 37899999999998876433 5678888899
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcC
Q 008265 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (572)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 412 (572)
.+...|++++|...|+++.+. .+.+...+..+...|...|++++|+..++++.+... .+...|..+...|.+.|
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKEL-----DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKN 386 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHT-----CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHHh-----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCC
Confidence 999999999999999998873 233566888899999999999999999999887632 25678888999999999
Q ss_pred CHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHH---hCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhh
Q 008265 413 LVEQAMHLFEEMLQAGC-EPN----SQCCNILLQACVE---ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484 (572)
Q Consensus 413 ~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (572)
++++|...++++.+... .++ ...+..+...+.+ .|++++|.+.|++..+..
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------- 445 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--------------------- 445 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC---------------------
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC---------------------
Confidence 99999999999876421 112 3478888899999 999999999999876532
Q ss_pred hccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCCHH
Q 008265 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549 (572)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~~~ 549 (572)
..+..+|..+...|.. +.++|...+++..+ +.|+..
T Consensus 446 ---------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 446 ---------------------------PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp ---------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred ---------------------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 2356677777777765 67899999999988 457654
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=1.5e-16 Score=163.74 Aligned_cols=397 Identities=9% Similarity=-0.023 Sum_probs=282.6
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
....|..+...+.+.|++++|+..|+.+.+..+. . ...+..+...+...|++++|+..|+++.+. .|+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--E------PVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHS 93 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--C------cHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchH
Confidence 3577888899999999999999999999987533 1 445666777889999999999999999886 35422
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchH----------------------------------H
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE----------------------------------F 195 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------------------------------~ 195 (572)
..+..+.. .+...|++++|+..|+.+.. .|.....+ .
T Consensus 94 ---~~~~~la~---~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 94 ---KALLRRAS---ANESLGNFTDAMFDLSVLSL---NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp ---HHHHHHHH---HHHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred ---HHHHHHHH---HHHHcCCHHHHHHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 23333333 33457999999999964421 12111111 1
Q ss_pred HHHHHHhcCCChHHHHHhhhcCCCchh----HHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCc------HH
Q 008265 196 RIVQLCVNKPDVNLAIRYACIVPRADI----LFCNFVREFGK--------KRDLVSALRAYDASKKHLSSPN------MY 257 (572)
Q Consensus 196 ~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~------~~ 257 (572)
..+..+....+.+.+...+........ ....+...+.. .|++++|..+|+.+.+...... ..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 244 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL 244 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH
Confidence 122233333344444444433322222 22233333222 2589999999999987543211 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (572)
Q Consensus 258 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 335 (572)
.+..+...+...|++++|...|++..+. .|+...+..+...+. |++++|...++++.+.... +..++..+...+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHH
Confidence 5777778889999999999999999986 456666666666654 7999999999999886543 6788999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHH
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 415 (572)
..|++++|...|+++.+.. +.+...+..+...|...|++++|++.++++.+... .+...+..+...+...|+++
T Consensus 322 ~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLN-----PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-----TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHH
T ss_pred hcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHH
Confidence 9999999999999998742 33567889999999999999999999999988742 25678899999999999999
Q ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHh----------CCHhHHHHHHHHhhhcccccccccccCCchHHHH
Q 008265 416 QAMHLFEEMLQAG-----CEPNSQCCNILLQACVEA----------CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (572)
Q Consensus 416 ~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 480 (572)
+|...++++.+.. .......+......+.+. |++++|...|++..+..
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----------------- 458 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD----------------- 458 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-----------------
Confidence 9999999987632 122233455556777888 99999999999887532
Q ss_pred hhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhC
Q 008265 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542 (572)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~ 542 (572)
..+...|..+...|.. +.++|...|++..+.
T Consensus 459 -------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 459 -------------------------------PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp -------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2356677777777775 678999999998874
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=1.6e-17 Score=171.06 Aligned_cols=394 Identities=10% Similarity=-0.002 Sum_probs=283.1
Q ss_pred HHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccc
Q 008265 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (572)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 192 (572)
...+......+.+.|++++|+..|+++.+. .|+.. ..+..+..+ +.+.|++++|+..+++..+. .|.+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~---~~~~~la~~---~~~~g~~~~A~~~~~~al~~--~p~~~~ 94 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEP---VFYSNISAC---YISTGDLEKVIEFTTKALEI--KPDHSK 94 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCH---HHHHHHHHH---HHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCc---HHHHHHHHH---HHHcCCHHHHHHHHHHHHhc--CCchHH
Confidence 445666777889999999999999999887 34422 233333333 34479999999999999875 477778
Q ss_pred hHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCcHH---------
Q 008265 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL------SSPNMY--------- 257 (572)
Q Consensus 193 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~--------- 257 (572)
.+..+...+...|++++|+..|+.+...+......+..+...+....|...++.+.... ..|+..
T Consensus 95 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 95 ALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 89999999999999999999997665444444455666667777788888888875431 112222
Q ss_pred ---------------------HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC-HHH-------HHHHHHH
Q 008265 258 ---------------------ICRTIIDVCGI--------CGDYMKSRAIYEDLRSQNVTLN-IYV-------FNSLMNV 300 (572)
Q Consensus 258 ---------------------~~~~ll~~~~~--------~g~~~~a~~~~~~m~~~g~~p~-~~~-------~~~ll~~ 300 (572)
....+...+.. .|++++|..+|+++.+.. |+ ... +..+-..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHH
Confidence 12222222221 247899999999998763 33 222 2222222
Q ss_pred --hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcccc
Q 008265 301 --NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (572)
Q Consensus 301 --~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 378 (572)
..|++++|...++++.+.. |+...+..+...+...|++++|...|+++.+. .+.+..+|..+...+...|+
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL-----NPEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTC
T ss_pred HHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHhcCC
Confidence 3489999999999998864 55788888999999999999999999999874 24567889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
+++|++.++++.+.... +...|..+...|...|++++|..+++++.+.. +.+...+..+...+.+.|++++|.+.|++
T Consensus 326 ~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999886432 56788999999999999999999999998874 45677899999999999999999999999
Q ss_pred hhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHh------------
Q 008265 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC------------ 526 (572)
Q Consensus 459 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~------------ 526 (572)
+.+....... .......+......+.
T Consensus 404 a~~~~~~~~~------------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 404 AKRLEEVQEK------------------------------------------IHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHCSS------------------------------------------CSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHcCCcchh------------------------------------------hHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 8764422100 1111112222222222
Q ss_pred hcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCccccccc
Q 008265 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 527 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
++.++|...++...+.. +.+..++..+...|.+.|++++|.+.
T Consensus 442 ~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 45689999999998743 23567899999999999999998764
No 13
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=184.72 Aligned_cols=133 Identities=16% Similarity=0.190 Sum_probs=119.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhh
Q 008265 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (572)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 400 (572)
.--..||+++|++|++.|++++|.++|++|.++...| +.||+.|||+||.+||+.|++++|.++|++|.+.|+.||.+|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3345799999999999999999999999998765566 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 008265 401 WSSLINACANAGL-VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (572)
Q Consensus 401 ~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (572)
||+||.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+.+-++.+.+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH
Confidence 9999999999998 57899999999999999999999999987776644444433
No 14
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=2.8e-19 Score=184.22 Aligned_cols=154 Identities=12% Similarity=0.021 Sum_probs=129.5
Q ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHH---CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008265 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLS---AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (572)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 436 (572)
..-..+||+||++||+.|++++|.++|.+|.+ .|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34456999999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC-HhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCH
Q 008265 437 NILLQACVEACQ-FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515 (572)
Q Consensus 437 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 515 (572)
++||.++++.|+ .++|.++|++|.+.| +.||.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG-----------------------------------------------~~PD~ 236 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEG-----------------------------------------------LKLQA 236 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHT-----------------------------------------------CCSHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcC-----------------------------------------------CCCCh
Confidence 999999999998 478999999998665 79999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHccCC
Q 008265 516 TTYNILMKACCTDYYRVKALMNEMRTVGLSPN------HISWTILIDACGGSGN 563 (572)
Q Consensus 516 ~~~~~ll~a~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~l~~~~~~~g~ 563 (572)
.+|++++.++.++ .+.+..+++ .-++.|+ ..|...|.+.|.+.+.
T Consensus 237 vtY~~ll~~~eR~--~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl~s~d~~ 287 (1134)
T 3spa_A 237 LFTAVLLSEEDRA--TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287 (1134)
T ss_dssp HHHHSCCCHHHHH--HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHHHCCCSC
T ss_pred hhcccccChhhHH--HHHHHHHHh-CcccCCCCCCcccccchHHHHHHHccCCC
Confidence 9999998766543 344444444 3466665 4456667777776653
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=6.3e-15 Score=142.91 Aligned_cols=288 Identities=10% Similarity=0.023 Sum_probs=232.4
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHH
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 239 (572)
.+...|++++|+..|+++.+. .|.+...+..+...+...|++++|+..++.. |.....+..+...+...|++++
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHH
Confidence 345589999999999999875 4667788999999999999999999998774 5566889999999999999999
Q ss_pred HHHHHHHHHhcCCC--CcHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cC
Q 008265 240 ALRAYDASKKHLSS--PNMYICRTI------------IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AH 303 (572)
Q Consensus 240 a~~~~~~m~~~~~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~ 303 (572)
|...|+...+.... .+...+..+ ...+...|++++|.+.|+++.+.. +.+...+..+...+ .|
T Consensus 90 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 90 AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCC
Confidence 99999999885320 134444444 578899999999999999998763 23455555555543 48
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHH------------HHHH
Q 008265 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS------------TIVK 371 (572)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------~li~ 371 (572)
++++|...++++.+... .+..++..+...+...|++++|...|+...+.. +.+...+. .+..
T Consensus 169 ~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 169 EPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp CHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988653 378889999999999999999999999998741 23333333 2366
Q ss_pred HHHccccHHHHHHHHHHHHHCCCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 008265 372 VFADAKWWQMALKVKEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 447 (572)
.+.+.|++++|...++++.+.... +. ..+..+..++...|++++|...+++..+.. +.+..++..+...+.+.|
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEE 320 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC
Confidence 688999999999999999886432 22 235567789999999999999999998863 447889999999999999
Q ss_pred CHhHHHHHHHHhhhc
Q 008265 448 QFDRAFRLFRSWTLS 462 (572)
Q Consensus 448 ~~~~A~~~~~~m~~~ 462 (572)
++++|.+.|++..+.
T Consensus 321 ~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 321 MYDEAIQDYEAAQEH 335 (359)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998753
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=4.9e-15 Score=143.72 Aligned_cols=327 Identities=13% Similarity=0.041 Sum_probs=220.3
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...+..+...+...|++++|+..|+.+.+..+. . ...+..+...+...|++++|+..|+++.+. .|+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~- 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--N------YIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFT- 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--c------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcc-
Confidence 567888889999999999999999999987443 1 345666777888999999999999998886 34322
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCC---cccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHH
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV---KELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~l 227 (572)
..+..+.. .+...|++++|+..|+...+. .| .+...+..+..... ...+..+
T Consensus 72 --~~~~~l~~---~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------------~~~~~~~ 126 (359)
T 3ieg_A 72 --AARLQRGH---LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE------------------MQRLRSQ 126 (359)
T ss_dssp --HHHHHHHH---HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH------------------HHHHHHH
T ss_pred --hHHHHHHH---HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH------------------HHHHHHH
Confidence 23333333 334479999999999998865 34 33333433321110 0123334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCCh
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDL 305 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~ 305 (572)
...+...|++++|.++++.+.+... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+ .|++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 5566667777777777776665432 345666666677777777777777777766542 22344444444433 2667
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-H----HHHHH
Q 008265 306 KFTLEVYKNMQKLGVMADMASYN------------ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-V----FTYST 368 (572)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~----~~~~~ 368 (572)
++|...++...+.... +...+. .+...+.+.|++++|...++++.+. .|+ . ..+..
T Consensus 205 ~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT------EPSVAEYTVRSKER 277 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCchHHHHHHHHH
Confidence 7777777766654322 222222 3366788999999999999998874 233 2 23556
Q ss_pred HHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
+...+.+.|++++|++.+++..+.. +.+...|..+...|...|++++|.+.|++..+.. +-+...+..+..+..
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 7788999999999999999998863 2267888999999999999999999999998763 334555666555543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=9.8e-16 Score=149.44 Aligned_cols=283 Identities=12% Similarity=0.006 Sum_probs=208.7
Q ss_pred hhHHHHHH-HHHHHHhCCCC--CcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHH
Q 008265 169 GEVEMFVG-LMEVLEEFRLP--VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (572)
Q Consensus 169 g~~~~a~~-~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~ 241 (572)
|++++|+. .+++....... ..+...+..+...+...|++++|+..++.+ |.+..++..+...+.+.|++++|.
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 56666665 55543332111 112344556666666777777776666553 444577888888999999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHH--HhcCC
Q 008265 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS---------------LMN--VNAHD 304 (572)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~---------------ll~--~~~~~ 304 (572)
..|+.+.+... .+...+..+...|...|++++|.+.|+++.+...... ..+.. .+. ...|+
T Consensus 119 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (368)
T 1fch_A 119 SALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA-HLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG-GGCC---------------CTTHHHHHHHH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHhhhhcccHHHHHHHHHhhccc
Confidence 99998887642 3677888899999999999999999999887632111 11110 011 13478
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHH
Q 008265 305 LKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (572)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 383 (572)
+++|...++++.+..... +..++..+...|.+.|++++|...|+++... .+.+...|..+...+.+.|++++|+
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999998764332 5788999999999999999999999999874 2446789999999999999999999
Q ss_pred HHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHHhCCHhHHH
Q 008265 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE----------PNSQCCNILLQACVEACQFDRAF 453 (572)
Q Consensus 384 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~ 453 (572)
+.++++.+... .+...+..+..+|.+.|++++|...|+++.+.... ....+|..+..+|.+.|+.++|.
T Consensus 272 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99999987632 35678999999999999999999999998764211 12688999999999999999999
Q ss_pred HHHHHh
Q 008265 454 RLFRSW 459 (572)
Q Consensus 454 ~~~~~m 459 (572)
.++++-
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 998743
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.9e-14 Score=137.81 Aligned_cols=261 Identities=11% Similarity=0.025 Sum_probs=188.3
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 267 (572)
..+..+...+...|++++|+++++.+ |.+...+..++..+...|++++|..+++.+.+... .+...|..+...+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYYL 101 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHH
Confidence 44455555555666666666655543 33345566667777777888888888887776532 24567777777788
Q ss_pred hcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 008265 268 ICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344 (572)
Q Consensus 268 ~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 344 (572)
..| ++++|.+.|++..+.. +.+...|..+...+ .|++++|...++++.+.... +...+..+...|...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHH
Confidence 888 7888888888877653 12344455444443 37888888888887765433 4556666888888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC--------CCCchhhHHHHHHHHHHcCCHHH
Q 008265 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG--------VTPNTITWSSLINACANAGLVEQ 416 (572)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~~~ 416 (572)
..++++.+. .+.+...+..+...+...|++++|...+++..+.. ...+..+|..+..+|...|++++
T Consensus 180 ~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 180 RFFSQALSI-----APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHTT-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHh-----CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999888763 24456788888888999999999999998887642 12234678888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
|...+++..+.. +.+...+..+...+.+.|++++|.+.|++..+
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999988764 44677888888899999999999999987654
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.4e-14 Score=138.80 Aligned_cols=278 Identities=10% Similarity=-0.056 Sum_probs=224.2
Q ss_pred HhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcC-CHHH
Q 008265 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKR-DLVS 239 (572)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g-~~~~ 239 (572)
+...|++++|+.+|+++.+. .|.+...+..++..+...|++++|..+++.+ |.+...+..+...+...| ++++
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHH
Confidence 34479999999999999875 4566677888889999999999999988764 566688999999999999 9999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 008265 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQK 317 (572)
Q Consensus 240 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~~m~~ 317 (572)
|.+.|+...+... .+...|..+...+...|++++|.+.|++..+.... +...+..+... ..|++++|...+++..+
T Consensus 110 A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 110 ARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999987643 35678999999999999999999999999876422 23334334333 45899999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC
Q 008265 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (572)
Q Consensus 318 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (572)
.... +...+..+...+...|++++|...++++.+...... .+.+..++..+...|.+.|++++|+..+++..+..
T Consensus 188 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 188 IAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp TCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 6533 678899999999999999999999999987532110 13345689999999999999999999999998764
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCH
Q 008265 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC-VEACQF 449 (572)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~ 449 (572)
.. +...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..++ ...|+.
T Consensus 267 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 267 PQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred cc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 32 66789999999999999999999999998763 34677777777777 345554
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=1.8e-15 Score=147.60 Aligned_cols=288 Identities=12% Similarity=-0.004 Sum_probs=213.4
Q ss_pred hhhhCChhHHHH-HHHHhhhcCCCCcch-hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 008265 123 SIREGRIDCVVG-VLKKLNELGVAPLEL-FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (572)
Q Consensus 123 ~~~~g~~~~A~~-~~~~m~~~~~~p~~~-~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 200 (572)
+...|++++|++ .|++.... .|+.. .....+ ......+.+.|++++|+..|+++.+. .|.+...+..+...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~--~~~~~~~~~~~~---~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 107 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQF--EEENPLRDHPQP---FEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTT 107 (368)
T ss_dssp -----------CHHHHCCCCC--CSSCTTTTCSSH---HHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhc--CCCCcccchHHH---HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 345578899998 88876654 33221 111122 22222345589999999999999875 46677889999999
Q ss_pred HhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHH---------------
Q 008265 201 CVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRT--------------- 261 (572)
Q Consensus 201 ~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--------------- 261 (572)
+...|++++|+..++.. |.+..++..+...+...|++++|.+.|+.+.+...... ..+..
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA-HLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG-GGCC---------------C
T ss_pred HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHhhhhcccHHHH
Confidence 99999999999988764 66678899999999999999999999999987643221 12211
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 008265 262 IIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338 (572)
Q Consensus 262 ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 338 (572)
.+..+...|++++|...|+++.+..... +...+..+...+ .|++++|...++++.+... .+...+..+...+.+.|
T Consensus 187 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGN 265 (368)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcC
Confidence 2444448899999999999998763221 466776666654 4899999999999987643 36788999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC----------chhhHHHHHHHH
Q 008265 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP----------NTITWSSLINAC 408 (572)
Q Consensus 339 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----------~~~~~~~li~~~ 408 (572)
++++|...|+++.+. .+.+...+..+...|.+.|++++|...|+++.+..... ...+|..+..+|
T Consensus 266 ~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (368)
T 1fch_A 266 QSEEAVAAYRRALEL-----QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 340 (368)
T ss_dssp CHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH
Confidence 999999999999874 24567799999999999999999999999987652211 157899999999
Q ss_pred HHcCCHHHHHHHHHHH
Q 008265 409 ANAGLVEQAMHLFEEM 424 (572)
Q Consensus 409 ~~~g~~~~a~~~~~~m 424 (572)
...|+.++|..++.+.
T Consensus 341 ~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 341 SMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHTCGGGHHHHHTTC
T ss_pred HHhCChHhHHHhHHHH
Confidence 9999999999887643
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=5.5e-15 Score=143.99 Aligned_cols=258 Identities=12% Similarity=-0.008 Sum_probs=200.9
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 267 (572)
..+..+...+.+.|++++|+.+|+.+ |.+..++..+...|.+.|++++|...|++..+.. +.+...|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34556666666666666666666553 4455788889999999999999999999988764 235788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHH-H----------HHHHHHh--cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 008265 268 ICGDYMKSRAIYEDLRSQNVTLNIYV-F----------NSLMNVN--AHDLKFTLEVYKNMQKLGVM-ADMASYNILLKA 333 (572)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~g~~p~~~~-~----------~~ll~~~--~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~ 333 (572)
..|++++|...|+++.+.. |+... + ..+...+ .|++++|...++++.+.... .+..++..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999999988752 33211 1 1122222 36899999999999886433 268889999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCC
Q 008265 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (572)
Q Consensus 334 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 413 (572)
|...|++++|...|+++.+. .+.+..+|..+..+|.+.|++++|+..|+++.+... .+..+|..+..+|.+.|+
T Consensus 223 ~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 99999999999999999874 245678999999999999999999999999988632 247889999999999999
Q ss_pred HHHHHHHHHHHHHcCC---C--------CCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 414 VEQAMHLFEEMLQAGC---E--------PNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 414 ~~~a~~~~~~m~~~~~---~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
+++|...|+++.+..- . .+..+|..+..++...|+.+.+.++..+
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999876420 1 1357899999999999999999888764
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=6.8e-13 Score=136.05 Aligned_cols=373 Identities=10% Similarity=0.009 Sum_probs=207.3
Q ss_pred hcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhh
Q 008265 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (572)
Q Consensus 62 ~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~ 141 (572)
.+..+|.. ...|..++. +.+.|++++|..+|+.+.+..+ .. ...+...+..+.+.|++++|..+|++...
T Consensus 5 al~~~P~~-~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P--~~------~~~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 5 KLEENPYD-LDAWSILIR-EAQNQPIDKARKTYERLVAQFP--SS------GRFWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp HHHHCTTC-HHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT--TC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HhhhCCCC-HHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 44556665 788999988 4788999999999999998743 32 44455566677788999999999999988
Q ss_pred cCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHH----HHHHHHh-CCCCCcccchHHHHHHHHhc---------CCCh
Q 008265 142 LGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVG----LMEVLEE-FRLPVKELDEEFRIVQLCVN---------KPDV 207 (572)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~----~~~~~~~-~~~~~~~~~~~~~ll~~~~~---------~g~~ 207 (572)
. .|+.. ++..++.... ...|+.+.|.+ +|+.... .|..+.+...|...+..... .|++
T Consensus 75 ~--~p~~~----lw~~~~~~~~--~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 75 K--VLHID----LWKCYLSYVR--ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp T--CCCHH----HHHHHHHHHH--HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred c--CCChH----HHHHHHHHHH--HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 6 46433 2222221111 12455555554 6666544 35556666667666665443 5677
Q ss_pred HHHHHhhhcCCC---ch--hHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------hcC---CCCc-----
Q 008265 208 NLAIRYACIVPR---AD--ILFCNFVREF-------------GKKRDLVSALRAYDASK------KHL---SSPN----- 255 (572)
Q Consensus 208 ~~a~~~~~~~~~---~~--~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~~---~~~~----- 255 (572)
+.|..+|+.... .. ..|....... .+.++++.|..++..+. +.. +.|+
T Consensus 147 ~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 147 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 777777766322 11 2232222211 12344555655555421 111 1222
Q ss_pred ---HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHh---------cCChH-------HH
Q 008265 256 ---MYICRTIIDVCGIC----GDY----MKSRAIYEDLRSQNVTLNIYVFNSLMNVN---------AHDLK-------FT 308 (572)
Q Consensus 256 ---~~~~~~ll~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---------~~~~~-------~a 308 (572)
...|...+...... ++. +.+..+|++..... +-+...|......+ .|+.+ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 23444444332221 121 35556666665541 12344444443332 35554 66
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccccHHHHHHHH
Q 008265 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVK 386 (572)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~ 386 (572)
..+|+...+.-.+-+...|..++..+.+.|++++|..+|+.+.+ ..|+ ...|..++..+.+.|++++|.++|
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA------IEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------SSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC------ccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 66666665421222456666666666666777777777766665 2343 235666666666666677777777
Q ss_pred HHHHHCCCCCchhhHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 387 EDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 387 ~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
++..+.... +...|...... +...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++...
T Consensus 380 ~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 380 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 666654211 11222211111 224666677777776666542 22456666666666666777777777666543
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=1.9e-14 Score=137.66 Aligned_cols=256 Identities=8% Similarity=-0.082 Sum_probs=194.8
Q ss_pred HHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 008265 196 RIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (572)
Q Consensus 196 ~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 271 (572)
.+...+...|++++|..+++.+ |.+...+..+...+...|++++|...|+.+.+.. +.+...+..+...|...|+
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCC
Confidence 3344444444444444444332 3334667778888888899999999998887763 3367788888888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHH--------------H---HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 272 YMKSRAIYEDLRSQNVTLNI-YVFNSL--------------M---NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333 (572)
Q Consensus 272 ~~~a~~~~~~m~~~g~~p~~-~~~~~l--------------l---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 333 (572)
+++|.+.|+++.+.. |+. ..+..+ . ....|++++|...++++.+.... +...+..+...
T Consensus 105 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 181 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL 181 (327)
T ss_dssp HHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 999999999888763 222 122221 1 11226789999999999876543 78889999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCC
Q 008265 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (572)
Q Consensus 334 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 413 (572)
+.+.|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.+... .+...|..+...|...|+
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVEL-----RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcc
Confidence 99999999999999999874 244677899999999999999999999999887642 256789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 414 VEQAMHLFEEMLQAGCEP-----------NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+++|.+.++++.+..... +..+|..+..++.+.|+.++|..++++..+
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999998753221 467899999999999999999999876543
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.67 E-value=8.7e-15 Score=142.61 Aligned_cols=252 Identities=13% Similarity=-0.003 Sum_probs=192.2
Q ss_pred CChHHHHHhhhcCCCch----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008265 205 PDVNLAIRYACIVPRAD----ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (572)
Q Consensus 205 g~~~~a~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 280 (572)
+....+...+...+.+. ..+..+...+.+.|++++|.++|+.+.+... .+...|..+...|.+.|++++|...|+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQ 123 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33444555555444443 4488899999999999999999999988643 468899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008265 281 DLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVM---------ADMASYNILLKACCLAGNTVLAQEIYGE 349 (572)
Q Consensus 281 ~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~---------~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 349 (572)
+..+.. +.+...|..+..++. |++++|...++++.+.... .....+..+...+.+.|++++|...|++
T Consensus 124 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 124 RCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 998763 234667777766654 8999999999999874311 0122334557889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008265 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429 (572)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 429 (572)
+.+.. . ...+..++..+...|...|++++|++.|+++.+... .+..+|..+..+|...|++++|...|+++.+..
T Consensus 203 al~~~--p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 277 (365)
T 4eqf_A 203 AAHQN--G-DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ- 277 (365)
T ss_dssp HHHHS--C-SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhC--c-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 98842 1 112688999999999999999999999999988643 367889999999999999999999999998874
Q ss_pred CCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 430 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+.+..++..+..+|.+.|++++|...|++..+..
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4458899999999999999999999999987643
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=2e-12 Score=138.12 Aligned_cols=374 Identities=13% Similarity=0.125 Sum_probs=248.0
Q ss_pred HHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhh
Q 008265 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (572)
Q Consensus 75 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ 154 (572)
...+.+|+..|.+.+|+++++.+.-. |+.|+..-.. .+.++....+. +..+..++..++... ..++
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n~~L--qnlLi~tAIka-D~~Rv~eyI~kLd~~-d~~e------- 1054 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLD---NSVFSEHRNL--QNLLILTAIKA-DRTRVMEYINRLDNY-DAPD------- 1054 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcC---CCcccccHHH--HHHHHHHHHHh-ChhhHHHHHHHhhhc-cHHH-------
Confidence 45566677778888888888877732 2222211112 22233333343 344444454444321 0110
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHh-cCCChHHHHHhhhcCCCchhHHHHHHHHHHh
Q 008265 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV-NKPDVNLAIRYACIVPRADILFCNFVREFGK 233 (572)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~ 233 (572)
+.. .+...|.+++|..+|++.. .+...+..+. ..+++++|.++.+++.. ..+|..+..++.+
T Consensus 1055 ---IA~---Iai~lglyEEAf~IYkKa~----------~~~~A~~VLie~i~nldrAiE~Aervn~-p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1055 ---IAN---IAISNELFEEAFAIFRKFD----------VNTSAVQVLIEHIGNLDRAYEFAERCNE-PAVWSQLAKAQLQ 1117 (1630)
T ss_pred ---HHH---HHHhCCCHHHHHHHHHHcC----------CHHHHHHHHHHHHhhHHHHHHHHHhcCC-HHHHHHHHHHHHh
Confidence 111 1233688888888888752 1111122223 67788888888877633 5788899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHH
Q 008265 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEV 311 (572)
Q Consensus 234 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~ 311 (572)
.|++++|.+.|.+. -|...|..++.++.+.|++++|.+.|...++..-.|...+ .+..+|+ +++++....
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHHHHHHhhcCHHHHHHH
Confidence 99999999988653 3677888889999999999999999988776542222333 3555554 455543222
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Q 008265 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (572)
Q Consensus 312 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (572)
.+ .++...+..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++..
T Consensus 1190 ----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaarKA~- 1248 (1630)
T 1xi4_A 1190 ----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKAN- 1248 (1630)
T ss_pred ----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHHHhC-
Confidence 22 345667777888888999999999998763 378888899999999999999998763
Q ss_pred CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccc
Q 008265 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471 (572)
Q Consensus 392 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 471 (572)
+..+|.-+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++.-....
T Consensus 1249 -----n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-------- 1310 (1630)
T 1xi4_A 1249 -----STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-------- 1310 (1630)
T ss_pred -----CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------
Confidence 6688888888898888888888766542 3456667788999999999999999997654211
Q ss_pred cCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh-cH---HHHHHHHHHHHhCCCCC-
Q 008265 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-DY---YRVKALMNEMRTVGLSP- 546 (572)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~-~~---~~a~~~~~~m~~~g~~p- 546 (572)
......|+-|-..|++ .. .++.++|..- -.++|
T Consensus 1311 ----------------------------------------raH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~k~ 1348 (1630)
T 1xi4_A 1311 ----------------------------------------RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKV 1348 (1630)
T ss_pred ----------------------------------------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccchH
Confidence 1244566667677776 33 3444444422 12333
Q ss_pred -----CHHHHHHHHHHHHccCCccccc
Q 008265 547 -----NHISWTILIDACGGSGNVEGAL 568 (572)
Q Consensus 547 -----~~~~~~~l~~~~~~~g~~~~a~ 568 (572)
+...|.-++-.|.+.|+++.|.
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4567999999999999999887
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=6.1e-16 Score=148.04 Aligned_cols=235 Identities=13% Similarity=0.100 Sum_probs=59.5
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (572)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 246 (572)
+.|++++|.+.++++. ....|..++.++.+.|++++|++.|.+.+ +...|..++..+...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika~-D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4677888888888762 12467788888888888888888776653 334777777777777888888876666
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCH
Q 008265 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADM 324 (572)
Q Consensus 247 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~ 324 (572)
.++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...+. |.+++|...|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 5553 3445667777778888887777776663 144444444444433 4455555555543
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
..|..+..++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+. ..|+. ...+
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~l 213 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKAN----------STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEEL 213 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHHT----------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHcC----------CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHH
Confidence 134555555555555555555554431 34455555555555555555533332211 11221 2234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 443 (572)
+..|.+.|++++|..+++...... +-....|+-+--+|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~ 251 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 251 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHH
Confidence 445555555555555555544332 22334444443333
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.66 E-value=1.4e-11 Score=124.85 Aligned_cols=350 Identities=12% Similarity=0.008 Sum_probs=270.2
Q ss_pred hhHHHHHHHhHhh----cCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhh----hCChhHHHHHHHHhhhc
Q 008265 71 NDYYADMASKLAK----DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR----EGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 71 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~m~~~ 142 (572)
...+..+...+.. .+++++|+..|+...+.|.. .++..+...|.. .+++++|+..|++..+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~----------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYT----------PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK 108 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4667777777777 89999999999999877532 223334444555 88999999999999886
Q ss_pred CCCCcchhhhhhhHHHHHHHHH-HhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhc----CCChHHHHHhhhcC
Q 008265 143 GVAPLELFDGSGFKLLKNECQR-LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN----KPDVNLAIRYACIV 217 (572)
Q Consensus 143 ~~~p~~~~~~~~~~~l~~~~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~ 217 (572)
| .++ ....+-..+.. ..-.+++++|+..|++..+.+ +...+..+...|.. .++.++|.+.|+..
T Consensus 109 ~-~~~------a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 109 G-LPQ------AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp T-CHH------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred C-CHH------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 5 221 22222221111 011579999999999988765 34567778888887 78999999999875
Q ss_pred --CCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 008265 218 --PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNV 287 (572)
Q Consensus 218 --~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~ 287 (572)
..+...+..+...|.. .++.++|.++|+...+.| +...+..+...|.. .+++++|...|++..+.|.
T Consensus 178 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 254 (490)
T 2xm6_A 178 AEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN 254 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 2345778888888888 899999999999998864 56677788888876 7899999999999988753
Q ss_pred CCCHHHHHHH--HHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHh
Q 008265 288 TLNIYVFNSL--MNVN----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA-----GNTVLAQEIYGEVKHLEAK 356 (572)
Q Consensus 288 ~p~~~~~~~l--l~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~ 356 (572)
...+..+ +... .++.++|...|++..+.| +...+..+...|... ++.++|...|++..+.
T Consensus 255 ---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--- 325 (490)
T 2xm6_A 255 ---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--- 325 (490)
T ss_dssp ---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT---
T ss_pred ---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc---
Confidence 2333222 2222 478999999999998764 566777888888887 8999999999998862
Q ss_pred CCCCCCHHHHHHHHHHHHccc---cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 008265 357 GVLKLDVFTYSTIVKVFADAK---WWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGC 429 (572)
Q Consensus 357 ~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 429 (572)
-+...+..+...|...| ++++|++.|++..+.| +...+..+...|.. .++.++|.+.|++..+.|
T Consensus 326 ----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 326 ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp ----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 25567777877887755 8999999999999873 66788888999988 899999999999999876
Q ss_pred CCCHHHHHHHHHHHHH----hCCHhHHHHHHHHhhhcc
Q 008265 430 EPNSQCCNILLQACVE----ACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 430 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 463 (572)
+...+..|...|.+ .++.++|...|++..+.+
T Consensus 398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 57788888888888 899999999999987654
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=8.5e-14 Score=130.32 Aligned_cols=251 Identities=8% Similarity=0.023 Sum_probs=142.2
Q ss_pred HhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHH
Q 008265 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (572)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l 158 (572)
+..-..|++..|+..++..... .|+. ..+....+.+.|...|+++.|+..++.. .|. ....+..+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~-----~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~---~~~a~~~l 71 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPER-----DVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAP---ELQAVRMF 71 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHH-----HHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--Cchh-----hHHHHHHHHHHHHHCCCHHHHHHHhccc-----CCh---hHHHHHHH
Confidence 4455678889999888765443 3432 1223334567888999999888766441 221 12244444
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHH
Q 008265 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (572)
Q Consensus 159 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~ 238 (572)
... +...++.++|++.++++...+..|.+...+..+..++...|++++|++.++. +.+...+..++..+.+.|+++
T Consensus 72 a~~---~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 72 AEY---LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHH---HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHH---HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 332 3447889999999998887766677766666667777777777777777776 555566666677777777777
Q ss_pred HHHHHHHHHHhcCCCCcHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHHHHH
Q 008265 239 SALRAYDASKKHLSSPNMYIC---RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYK 313 (572)
Q Consensus 239 ~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~~ 313 (572)
+|.+.|+.+.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++ .|++++|...|+
T Consensus 148 ~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 148 LARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777766643 332111 12223333345666666666666554 122333343333332 244555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHH
Q 008265 314 NMQKLGVMADMASYNILLKACCLAGNTVL-AQEIYGEVKH 352 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~ 352 (572)
+..+.... +..++..++..+...|+.++ +.++++++.+
T Consensus 225 ~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 225 EALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 54443221 34444444444444454433 3344444443
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.64 E-value=9e-14 Score=130.13 Aligned_cols=219 Identities=12% Similarity=0.081 Sum_probs=108.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HH--hcC
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NV--NAH 303 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~--~~~ 303 (572)
+.++|...|+++.|...++. .-.|+..++..+...+...|+.++|++.++++...+..|+...+...+ .. ..|
T Consensus 40 l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555443322 122344444555555555555555555555555444333322222221 11 224
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccccHH
Q 008265 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQ 380 (572)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~ 380 (572)
++++|+..+++ ..+...+..+...+.+.|++++|.+.|+.+.+. .|+... ....+..+...|+++
T Consensus 116 ~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~------~p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 116 NPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ------DEDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp CHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHCTTHHH
T ss_pred CHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CcCcHHHHHHHHHHHHHhCchHHH
Confidence 55555555544 234555555566666666666666666666542 233211 111223333345666
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhH-HHHHHHHh
Q 008265 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR-AFRLFRSW 459 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m 459 (572)
+|..+|+++.+.. +.+...|+.+..++.+.|++++|...|++..+.. +-+..++..++..+...|+.++ +.++++++
T Consensus 184 eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 184 DAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6666666665542 2344555666666666666666666666655542 3345555566666666666543 44555555
Q ss_pred hhcc
Q 008265 460 TLSK 463 (572)
Q Consensus 460 ~~~~ 463 (572)
.+.+
T Consensus 262 ~~~~ 265 (291)
T 3mkr_A 262 KDAH 265 (291)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 5443
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.60 E-value=2.3e-13 Score=130.06 Aligned_cols=251 Identities=10% Similarity=0.026 Sum_probs=202.4
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHH
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 239 (572)
.+...|++++|+.+|+++.+. .|.+...+..+...+...|++++|...++.+ |.+..++..+...+...|++++
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHH
Confidence 345589999999999998875 4667778889999999999999999988764 5666889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--c
Q 008265 240 ALRAYDASKKHLSSPNMYICRTI--------------ID-VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--A 302 (572)
Q Consensus 240 a~~~~~~m~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~ 302 (572)
|.+.++.+.+.... +...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+...+ .
T Consensus 108 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 108 ALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHh
Confidence 99999999875322 22222222 22 3778899999999999998763 23556666665554 4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
|++++|...++++.+... .+..++..+...+...|++++|...|+++.+. .+.+...+..+...|.+.|++++|
T Consensus 186 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDI-----NPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhccHHHH
Confidence 899999999999987653 36788999999999999999999999999874 244677899999999999999999
Q ss_pred HHHHHHHHHCCCCC-----------chhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 383 LKVKEDMLSAGVTP-----------NTITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 383 ~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
.+.++++.+..... +...|..+..++.+.|+.++|..++++.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999988763221 4678999999999999999999998754
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.7e-12 Score=131.02 Aligned_cols=372 Identities=10% Similarity=-0.048 Sum_probs=232.3
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcC--ChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcC---C
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEG--NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG---V 144 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~---~ 144 (572)
....|+.+...+...|++++|++.|++..+... .++.. ..-...++.++...|...|++++|...+++..+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~-~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA-EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC-TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc-chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 367899999999999999999999998765310 00000 00013456777888999999999999998876541 1
Q ss_pred CCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHH---HhcCCChHHHHHhhhc----C
Q 008265 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL---CVNKPDVNLAIRYACI----V 217 (572)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~----~ 217 (572)
.+.......++...-.+... ...+++++|+..|++..+. .|++...+..+..+ +...++.++|++.++. -
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~-~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLK-CGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHH-HCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccchhhHHHHHHHHHHHHH-HccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 11111011122111111111 1246899999999998875 46666666655544 3445677777776654 3
Q ss_pred CCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HH
Q 008265 218 PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IY 292 (572)
Q Consensus 218 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ 292 (572)
|.+..++..+...+.. .|++++|.+++++..+... .+...+..+...|.+.|++++|...|++..+. .|+ ..
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 5555666666655554 4678899999998877643 46678899999999999999999999999876 344 44
Q ss_pred HHHHHHHHhc---------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 293 VFNSLMNVNA---------------------HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 293 ~~~~ll~~~~---------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
.+..+-.++. +..+.|...+.+..+.... +..++..+...|...|++++|+..|++..
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 4443332221 1356677777777665432 45567788889999999999999999987
Q ss_pred HHHHhCCCCCCHHH----HHHHHH-HHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 352 HLEAKGVLKLDVFT----YSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 352 ~~~~~~~~~~~~~~----~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
. ..|+... +..+.. .....|+.++|+..|.+..+. .|+...... ....+.++++...+
T Consensus 362 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 362 S------KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLS 424 (472)
T ss_dssp H------SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHH
T ss_pred h------cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHH
Confidence 6 3344322 222222 245678999999999998876 454433222 22344555666555
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccc
Q 008265 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (572)
Q Consensus 427 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 467 (572)
.. +.+..+|..+...|...|++++|.+.|++..+.+...+
T Consensus 425 ~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 425 KN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HC-C-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 43 55678899999999999999999999999887665443
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.58 E-value=5.9e-15 Score=141.29 Aligned_cols=204 Identities=12% Similarity=0.145 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---DILFCNFVREFGKKRDLVSALRAY 244 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~ 244 (572)
.|++++|++.|.+. ++...|..++.++...|++++|+++++...++ ..+.+.++.+|.+.|+++++.+++
T Consensus 45 ~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~ 117 (449)
T 1b89_A 45 KGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI 117 (449)
T ss_dssp -----------------------------------------------------------------------CHHHHTTTT
T ss_pred cCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHH
Confidence 45555555555431 23344555555555556666555555443222 144555555666666655555555
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCC
Q 008265 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMA 322 (572)
Q Consensus 245 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~ 322 (572)
+ .|+..+|+.+...|...|.+++|..+|..+ ..|..+..++. |++++|.+.+.++ .
T Consensus 118 ~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~ 175 (449)
T 1b89_A 118 N-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 175 (449)
T ss_dssp T-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------T
T ss_pred c-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------C
Confidence 3 144445555556666666666666665544 23444444432 5555555555555 1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
++.+|..++.+|...|+++.|......+. .+..-...++..|.+.|++++|..+++...... +-....|+
T Consensus 176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---------~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ft 245 (449)
T 1b89_A 176 STRTWKEVCFACVDGKEFRLAQMCGLHIV---------VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 245 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHH
T ss_pred CchhHHHHHHHHHHcCcHHHHHHHHHHHH---------hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHH
Confidence 45555556666666666655543333211 122223345555555566666655555554332 22334455
Q ss_pred HHHHHHHH
Q 008265 403 SLINACAN 410 (572)
Q Consensus 403 ~li~~~~~ 410 (572)
-|.-.|++
T Consensus 246 el~il~~k 253 (449)
T 1b89_A 246 ELAILYSK 253 (449)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 45444444
No 33
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.56 E-value=2.7e-10 Score=115.48 Aligned_cols=300 Identities=13% Similarity=0.064 Sum_probs=237.6
Q ss_pred hCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhh----hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHH
Q 008265 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLD----SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (572)
Q Consensus 126 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 201 (572)
.+++++|+..|++..+.|..+ ....+-. .+.. .++.++|+..|++..+.+ +...+..|...|
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~-------a~~~Lg~---~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y 121 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTP-------AEYVLGL---RYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMY 121 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHH-------HHHHHHH---HHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHH-------HHHHHHH---HHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHH
Confidence 789999999999988764221 2222222 1223 689999999999988764 345677788888
Q ss_pred hc----CCChHHHHHhhhcC--CCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---
Q 008265 202 VN----KPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI--- 268 (572)
Q Consensus 202 ~~----~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--- 268 (572)
.. .+++++|.+.|+.. ..+...+..|...|.. .+++++|.+.|+...+.| +...+..+...|..
T Consensus 122 ~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 198 (490)
T 2xm6_A 122 HEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLG 198 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCC
Confidence 88 88999999999875 3344677778888887 889999999999998864 67788888888888
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----c
Q 008265 269 -CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN------AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----A 337 (572)
Q Consensus 269 -~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~ 337 (572)
.++.++|.+.|++..+.| +...+..+-..+ .++.++|...|++..+.| +...+..+...|.. .
T Consensus 199 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~ 272 (490)
T 2xm6_A 199 VERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGA 272 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSS
T ss_pred CCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCC
Confidence 899999999999999876 334444443332 468999999999998764 56677777778887 8
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcC
Q 008265 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA-----KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (572)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 412 (572)
++.++|...|+...+ .-+...+..+...|... +++++|+..+++..+.| +...+..+...|...|
T Consensus 273 ~d~~~A~~~~~~a~~-------~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 273 KEPLKALEWYRKSAE-------QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp CCHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 999999999999875 23566777788888877 89999999999999875 4566777888887766
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCHhHHHHHHHHhhh
Q 008265 413 ---LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE----ACQFDRAFRLFRSWTL 461 (572)
Q Consensus 413 ---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 461 (572)
+.++|.++|++..+.| +...+..+...|.. .++.++|.+.|++..+
T Consensus 343 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 7899999999998874 67788888888988 8999999999998765
No 34
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=6.8e-11 Score=121.14 Aligned_cols=380 Identities=12% Similarity=0.028 Sum_probs=253.6
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHH----
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVG---- 134 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~---- 134 (572)
+-+.+...|.. ...|...+..+.+.|++++|..+|++.+...+.++-|. .+... .....|+++.|.+
T Consensus 35 ~e~al~~~P~~-~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~------~~~~~--~~~~~~~~~~a~~~~~~ 105 (530)
T 2ooe_A 35 YERLVAQFPSS-GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWK------CYLSY--VRETKGKLPSYKEKMAQ 105 (530)
T ss_dssp HHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHH------HHHHH--HHHHTTTSTTHHHHHHH
T ss_pred HHHHHHHCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHH------HHHHH--HHHHccchhhHHHHHHH
Confidence 44445566765 78999999999999999999999999998865433221 12111 1123466766665
Q ss_pred HHHHhhhc-CCCCcchhhhhhhHHHHHHHHH------HhhhhhHHHHHHHHHHHHhCCCCCccc--chHHHHHHH---H-
Q 008265 135 VLKKLNEL-GVAPLELFDGSGFKLLKNECQR------LLDSGEVEMFVGLMEVLEEFRLPVKEL--DEEFRIVQL---C- 201 (572)
Q Consensus 135 ~~~~m~~~-~~~p~~~~~~~~~~~l~~~~~~------~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~---~- 201 (572)
+|++.... |..|+.. ..+..++..... +.+.|+++.|..+|++..+. |... ..|...... +
T Consensus 106 ~~~~al~~~g~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 106 AYDFALDKIGMEIMSY---QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHTTTSTTCH---HHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCcccH---HHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhc
Confidence 67666543 5555421 122223221111 01268999999999998872 2221 223221111 0
Q ss_pred ---------hcCCChHHHHHhhhc--------------CCCc--------hhHHHHHHHHHHhc----CCH----HHHHH
Q 008265 202 ---------VNKPDVNLAIRYACI--------------VPRA--------DILFCNFVREFGKK----RDL----VSALR 242 (572)
Q Consensus 202 ---------~~~g~~~~a~~~~~~--------------~~~~--------~~~~~~li~~~~~~----g~~----~~a~~ 242 (572)
...+++..|..++.. +++. ...|...+...... ++. +.+..
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 123456666654332 2332 13455555443322 232 47778
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChH
Q 008265 243 AYDASKKHLSSPNMYICRTIIDVCGI-------CGDYM-------KSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLK 306 (572)
Q Consensus 243 ~~~~m~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~ 306 (572)
+|++..... +-+...|......+.+ .|+++ +|.++|++..+.-.+-+...|..+...+ .|+++
T Consensus 260 ~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 260 AYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 898887752 3367788888888775 79987 8999999998632233466777666654 48999
Q ss_pred HHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHH-HHHccccHHHH
Q 008265 307 FTLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVK-VFADAKWWQMA 382 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~-~~~~~g~~~~a 382 (572)
+|..+|+++.+. .|+ ...|...+..+.+.|++++|.++|+...+. .|+ ...|..... .+...|+.++|
T Consensus 339 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~------~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 339 KVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED------ARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------cCCchHHHHHHHHHHHHHcCChhHH
Confidence 999999999985 343 357888889899999999999999999862 232 223322222 23468999999
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEP--NSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
..+|+...+... -+...|..++..+.+.|+.++|..+|++....+ ..| ....|...+....+.|+.+.+..+++++
T Consensus 411 ~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999887632 256889999999999999999999999998863 233 2557888888888899999999999988
Q ss_pred hhcc
Q 008265 460 TLSK 463 (572)
Q Consensus 460 ~~~~ 463 (572)
.+..
T Consensus 490 ~~~~ 493 (530)
T 2ooe_A 490 FTAF 493 (530)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 7643
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=2.8e-11 Score=122.14 Aligned_cols=296 Identities=12% Similarity=-0.057 Sum_probs=204.9
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC-------CCCCcccchHHHHHHHHhcCCChHHHHHhhhcC---------
Q 008265 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEF-------RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--------- 217 (572)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--------- 217 (572)
.++.+-..+. ..|+.++|++.|++..+. ...+....+|+.+..+|...|++++|...++..
T Consensus 53 ~yn~Lg~~~~---~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 53 MCNLLAYLKH---LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4555544333 379999999999876542 124555678899999999999999999887653
Q ss_pred ---CCchhHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCC
Q 008265 218 ---PRADILFCNFVREFGKK--RDLVSALRAYDASKKHLSSPNMYICRTIIDV---CGICGDYMKSRAIYEDLRSQNVTL 289 (572)
Q Consensus 218 ---~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~g~~p 289 (572)
+....++..+..++.+. +++++|.+.|++..+..+. +...+..+..+ +...++.++|++.|++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 12235666666666554 5799999999998875432 34444444433 456688889999998887653 22
Q ss_pred CHHHHHHHHHH------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH
Q 008265 290 NIYVFNSLMNV------NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363 (572)
Q Consensus 290 ~~~~~~~ll~~------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 363 (572)
+...+..+... ..++.++|...+++....... +...+..+...|...|++++|...+++..+. .+-+.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~ 281 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY-----IPNNA 281 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----CCChH
Confidence 34444433322 125788999999998876543 6778889999999999999999999999874 23455
Q ss_pred HHHHHHHHHHHc-------------------cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 364 FTYSTIVKVFAD-------------------AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 364 ~~~~~li~~~~~-------------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
.++..+...|.. .+..+.|...+++..+... .+...+..+...|...|++++|.+.|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 667666665543 2346778888888776532 25577888999999999999999999999
Q ss_pred HHcCCCCCHH--HHHHHHH-HHHHhCCHhHHHHHHHHhhh
Q 008265 425 LQAGCEPNSQ--CCNILLQ-ACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 425 ~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~ 461 (572)
.+....+... .+..+.. ...+.|+.++|...|++..+
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8864333221 2222222 23467899999999988764
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.53 E-value=2.3e-10 Score=122.66 Aligned_cols=333 Identities=9% Similarity=0.020 Sum_probs=239.4
Q ss_pred HhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHH-HHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchH
Q 008265 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL-LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE 194 (572)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~-l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (572)
....++.|...|.+.+|+++|++.... |+.+..+..+.. ++.+..+ . +..+..+..+.+.. ...
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n~~LqnlLi~tAIk-a---D~~Rv~eyI~kLd~--------~d~ 1052 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLD---NSVFSEHRNLQNLLILTAIK-A---DRTRVMEYINRLDN--------YDA 1052 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcC---CCcccccHHHHHHHHHHHHH-h---ChhhHHHHHHHhhh--------ccH
Confidence 345677888999999999999998843 443333333333 3332222 2 33444444444321 113
Q ss_pred HHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 008265 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (572)
Q Consensus 195 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 274 (572)
..+...+...|.+++|..+|++........+.++. ..|++++|.++.++.. +..+|..+..++.+.|++++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHH
Confidence 44788889999999999999998654444455544 6788999999988652 46789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
|.+.|.+. -|...|..++.++. |++++|.+.+....+.. ++....+.++.+|++.+++++..... .
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 99999664 36677777777654 89999999998877654 33333445888999999888644332 1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008265 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (572)
Q Consensus 353 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 432 (572)
.++...|..+...|...|++++|...|... ..|..+..+|.+.|++++|.+.+++. -+
T Consensus 1192 -------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1192 -------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 356677778999999999999999999985 37999999999999999999999877 35
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCC
Q 008265 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512 (572)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (572)
..+|..+-.+|...|+++.|......+ .
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I----------------------------------------------------i 1277 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI----------------------------------------------------V 1277 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh----------------------------------------------------h
Confidence 688999999999999999998876432 3
Q ss_pred CCHHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc
Q 008265 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNH-ISWTILIDACGG 560 (572)
Q Consensus 513 p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 560 (572)
.+...+..++..|.+ ..++|..+++.-.. +.|.. ..|.-|..+|++
T Consensus 1278 v~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1278 VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSK 1326 (1630)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHh
Confidence 445566677888876 46899999876654 33332 355445555544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.2e-12 Score=116.58 Aligned_cols=224 Identities=13% Similarity=0.033 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN--VTLN----IYVFN 295 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~ 295 (572)
..+..+...+...|++++|...|+...+.. .+...|..+..+|...|++++|...|++..+.. ..++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 467778888888899999999998888776 677888888888999999999999998887642 1112 34455
Q ss_pred HHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008265 296 SLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (572)
Q Consensus 296 ~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (572)
.+...+ .|++++|...|++..+.. |+. ..+.+.|++++|...++.+... .+.+...+..+...+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV-----NPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc-----CcchHHHHHHHHHHH
Confidence 554443 378999999998888753 342 3566778899999999998862 123455788888999
Q ss_pred HccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHH
Q 008265 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (572)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 453 (572)
...|++++|+..+++..+.... +...|..+..+|...|++++|...+++..+.. +.+...+..+..++.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999998876432 67788899999999999999999999998864 446788999999999999999999
Q ss_pred HHHHHhhhcc
Q 008265 454 RLFRSWTLSK 463 (572)
Q Consensus 454 ~~~~~m~~~~ 463 (572)
+.|++..+..
T Consensus 228 ~~~~~a~~~~ 237 (258)
T 3uq3_A 228 ETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999887654
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=3.2e-12 Score=114.09 Aligned_cols=201 Identities=11% Similarity=-0.032 Sum_probs=139.6
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008265 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (572)
Q Consensus 217 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 296 (572)
||++...+..+...+.+.|++++|...|+...+..+ .+...|..+...+.+.|++++|...|++..+.. |+
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~------ 71 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART--PR------ 71 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC------
Confidence 355556677777778888888888888887776532 356677777777888888888888887776652 32
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHHHHhCCCCCCHHH
Q 008265 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA-----------GNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (572)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 365 (572)
+...+..+..++... |++++|+..|++..+. -+-+...
T Consensus 72 --------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~ 120 (217)
T 2pl2_A 72 --------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYAPL 120 (217)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred --------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccHHH
Confidence 223333333333333 8999999999998874 1335678
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008265 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (572)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 445 (572)
+..+...+...|++++|+..|++..+.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+.+
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 8888899999999999999999998877 578888999999999999999999999998864 4467888888899999
Q ss_pred hCCHhHHHHHHHHhh
Q 008265 446 ACQFDRAFRLFRSWT 460 (572)
Q Consensus 446 ~g~~~~A~~~~~~m~ 460 (572)
.|++++|.+.|++..
T Consensus 198 ~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 198 KGKAEEAARAAALEH 212 (217)
T ss_dssp ---------------
T ss_pred ccCHHHHHHHHHHHh
Confidence 999999999988754
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.2e-11 Score=113.43 Aligned_cols=192 Identities=10% Similarity=0.014 Sum_probs=149.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--Cc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 295 (572)
..+..+...+...|++++|...++...+.... ++ ...|..+...|.+.|++++|...|++..+. .|+...+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~ 116 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTADILT 116 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhHHHH
Confidence 56677777777888888888888777654211 12 567888888888889999998888888875 34433222
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 008265 296 SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (572)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 375 (572)
..+++++|...++.+...... +...+..+...+...|++++|...|+++... .+.+...|..+...|.+
T Consensus 117 -----~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~ 185 (258)
T 3uq3_A 117 -----KLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAK 185 (258)
T ss_dssp -----HHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHH
T ss_pred -----HHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHH
Confidence 236688888888888775322 4567888888999999999999999999874 24567889999999999
Q ss_pred cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.|++++|+..+++..+... .+...|..+..++.+.|++++|.+.+++..+.
T Consensus 186 ~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 186 LMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999987642 25678889999999999999999999998764
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=1.6e-11 Score=112.41 Aligned_cols=202 Identities=11% Similarity=-0.025 Sum_probs=136.0
Q ss_pred CchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCC
Q 008265 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (572)
Q Consensus 67 p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p 146 (572)
|......|..+...+...|++++|++.|+.+.+.... . ..++..+...+...|++++|+..|+++.+.. |
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~ 102 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS--S------ADAHAALAVVFQTEMEPKLADEEYRKALASD--S 102 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT--C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--h------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--c
Confidence 4434688899999999999999999999999987433 1 3445666777889999999999999998863 3
Q ss_pred cchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchh
Q 008265 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADI 222 (572)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~ 222 (572)
+. ...+..+.. .+...|++++|+..++++.+.+..|.....+..+...+...|++++|...++.. |.+..
T Consensus 103 ~~---~~~~~~la~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (252)
T 2ho1_A 103 RN---ARVLNNYGG---FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS 176 (252)
T ss_dssp TC---HHHHHHHHH---HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred Cc---HHHHHHHHH---HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH
Confidence 32 113333333 334579999999999998873344555555666666666666666666665542 33445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
.+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56666666666666666666666665542 234455566666666666666666666666554
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=7e-12 Score=116.43 Aligned_cols=245 Identities=9% Similarity=-0.036 Sum_probs=141.5
Q ss_pred hhhHHHHHHHHHHHHhCCC--CCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRL--PVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 245 (572)
.|++++|+..++++.+... +|... .++..+...+...|++++|...|+
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~------------------------------~~~~~l~~~~~~~~~~~~A~~~~~ 67 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERA------------------------------QLLYERGVLYDSLGLRALARNDFS 67 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHH------------------------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhH------------------------------HHHHHHHHHHHHcccHHHHHHHHH
Confidence 6899999999999887532 12222 345555556666666666666666
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCC
Q 008265 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMAD 323 (572)
Q Consensus 246 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~ 323 (572)
...+... .+...|..+...|...|++++|...|++..+.. +.+...+..+...+ .|++++|...++++.+.. |+
T Consensus 68 ~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~ 143 (275)
T 1xnf_A 68 QALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PN 143 (275)
T ss_dssp HHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC
Confidence 6555422 245556666666666666666666666665542 11233343333332 356666666666665532 33
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC---chhh
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP---NTIT 400 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~ 400 (572)
.......+..+...|++++|...+.+.... .+++...+ .++..+...++.++|++.+.+..+..... +...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 144 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-----SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-----SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 333333444445667777777777666652 12333333 35666667777777777777766542110 1466
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHH
Q 008265 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (572)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 456 (572)
|..+...|.+.|++++|...|++..+.. |+. +.....++...|++++|.+.+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 7777778888888888888888877653 422 223345666777777777665
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.42 E-value=4.6e-10 Score=104.05 Aligned_cols=221 Identities=12% Similarity=0.027 Sum_probs=178.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 297 (572)
..+..+...+...|++++|.+.|+...+. -+...+..+...|.. .|++++|...|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 56677788888888899999888888773 345677778888888 899999999999888876 44444444
Q ss_pred HHH--h----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 298 MNV--N----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (572)
Q Consensus 298 l~~--~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (572)
-.. . .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. -+...+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~ 150 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------NDGDGCT 150 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------CcHHHHH
Confidence 333 3 578899999999888764 67788888888988 99999999999998862 2566777
Q ss_pred HHHHHHHc----cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008265 368 TIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (572)
Q Consensus 368 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (572)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 88888887 899999999999998864 45777888888999 999999999999998875 26677788
Q ss_pred HHHHHH----hCCHhHHHHHHHHhhhccc
Q 008265 440 LQACVE----ACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 440 i~~~~~----~g~~~~A~~~~~~m~~~~~ 464 (572)
...|.+ .+++++|.+.|++..+.+.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888 8999999999998877654
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=5.5e-12 Score=117.13 Aligned_cols=256 Identities=9% Similarity=-0.107 Sum_probs=134.2
Q ss_pred hHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHH
Q 008265 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (572)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 199 (572)
...+...|++++|+..|+++.+.....+.. ....+..+.. .+...|++++|+..|++..+.. |.+..
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~---~~~~~~~~~~A~~~~~~al~~~--~~~~~------- 78 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDE-RAQLLYERGV---LYDSLGLRALARNDFSQALAIR--PDMPE------- 78 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHH-HHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHHC--CCCHH-------
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCch-hHHHHHHHHH---HHHHcccHHHHHHHHHHHHHcC--CCcHH-------
Confidence 334567799999999999998873222211 2223333333 3445899999999999987643 44433
Q ss_pred HHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 008265 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279 (572)
Q Consensus 200 ~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 279 (572)
++..+...|...|++++|.+.|+...+... .+...+..+...|.+.|++++|...|
T Consensus 79 -----------------------~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 134 (275)
T 1xnf_A 79 -----------------------VFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDL 134 (275)
T ss_dssp -----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHH
Confidence 444455555555555555555555554321 13445555555566666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Q 008265 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (572)
Q Consensus 280 ~~m~~~g~~p~~~~~~~ll~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 357 (572)
+++.+.. |+.......+. ...|++++|...+.+...... ++...+ .++..+...++.++|...+..........
T Consensus 135 ~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 210 (275)
T 1xnf_A 135 LAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSL 210 (275)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccc
Confidence 6555432 22221111111 122556666666655544321 122222 24445555566666666666654321000
Q ss_pred CCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 008265 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (572)
Q Consensus 358 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (572)
.+.+...+..+...|.+.|++++|...|++..+. .|+. +.....++...|++++|.+.+
T Consensus 211 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 211 -AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred -cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 0011355666666666777777777777776665 2322 222244555566666666554
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=1.1e-10 Score=106.70 Aligned_cols=198 Identities=8% Similarity=-0.053 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
..+..+...+...|++++|.+.|+.+.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 455666677777777777777777776643 2345667777777777777777777777776542 11333343333332
Q ss_pred --cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcccc
Q 008265 302 --AHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (572)
Q Consensus 302 --~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 378 (572)
.|++++|...++++.+.+..| +...+..+...+...|++++|...|+++.+. .+.+...+..+...|...|+
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-----NRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHcCC
Confidence 256666666666655422223 3445566666677777777777777776653 13345566667777777777
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
+++|...++++.+... .+...+..+...+...|+.++|.++++++.+.
T Consensus 191 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777777665432 24455666666677777777777777776654
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=3.2e-10 Score=101.44 Aligned_cols=199 Identities=8% Similarity=-0.098 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV- 300 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~- 300 (572)
..+..+...+...|++++|.+.|+.+.+.. +.+...|..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 456666777777777777777777766643 2245666777777777777777777777766542 1123333333222
Q ss_pred -hc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccc
Q 008265 301 -NA-HDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377 (572)
Q Consensus 301 -~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 377 (572)
.. |++++|...++++.+.+..|+ ...+..+...+...|++++|...|+++.+. .+.+...+..+...+.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-----QPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHT
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCchHHHHHHHHHHHcC
Confidence 33 455555555555554222222 344555556666666666666666666542 1223555566666666666
Q ss_pred cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 378 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
++++|.+.++++.+.....+...+..+...+...|+.+++..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666666555422124444555555556666666666666665543
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=1.7e-10 Score=103.24 Aligned_cols=205 Identities=9% Similarity=-0.064 Sum_probs=151.6
Q ss_pred cccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 008265 189 KELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID 264 (572)
Q Consensus 189 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (572)
.+...+..+...+...|++++|.+.++.. |.+...+..+...+...|++++|.+.|+...+.. +.+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 33444555566666666666666655542 4445677888888888899999999998887753 235678888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 008265 265 VCGIC-GDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340 (572)
Q Consensus 265 ~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 340 (572)
.+... |++++|...|+++.+.+..|+ ...+..+..++ .|++++|...++++.+.... +...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 88999 999999999999887433343 34454444443 47899999999888776433 577888899999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 341 VLAQEIYGEVKHLEAKGVLK-LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
++|...++++.+.. + .+...+..+...+...|+.+++...++.+.+. .|+.....
T Consensus 164 ~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~ 219 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-----EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHH
Confidence 99999999988742 3 46777888888889999999999999998765 45544433
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=3.3e-10 Score=105.04 Aligned_cols=218 Identities=16% Similarity=0.059 Sum_probs=167.2
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcC--CCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDV 265 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (572)
..+..+...+...|++++|+..|+.. +.+...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 44455555566666666666665543 3334567777888888 889999999998888765 67778888888
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--h----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 266 CGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--N----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (572)
Q Consensus 266 ~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 335 (572)
|.. .+++++|...|++..+.+ +...+..+-.. . .+++++|+..|++..+.+ +...+..+...|.
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 888 899999999999888875 44444444333 3 578899999999888865 5667777888888
Q ss_pred H----cCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cccHHHHHHHHHHHHHCCCCCchhhHHHHHHH
Q 008265 336 L----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407 (572)
Q Consensus 336 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 407 (572)
. .+++++|...|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +...+..+...
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL-------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 8 89999999999988762 256778888888888 999999999999988874 25667778888
Q ss_pred HHH----cCCHHHHHHHHHHHHHcC
Q 008265 408 CAN----AGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 408 ~~~----~g~~~~a~~~~~~m~~~~ 428 (572)
|.. .++.++|.+.|++..+.|
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888 899999999999988775
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.40 E-value=4.1e-11 Score=106.86 Aligned_cols=192 Identities=9% Similarity=-0.097 Sum_probs=107.2
Q ss_pred CcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 008265 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (572)
Q Consensus 188 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 263 (572)
|++...+..+...+.+.|++++|+..|+.. |.+...+..+...+.+.|++++|...|++..+..+ .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 344455666677777777777777766653 45557888888899999999999999998887643 2566777888
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 008265 264 DVCGIC-----------GDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNI 329 (572)
Q Consensus 264 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 329 (572)
..+.+. |++++|...|++..+. .|+ ...+..+-.+ ..|++++|+..|++..+.. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 888777 6666666666666654 222 2222222222 2245555555555555444 34555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHH
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 389 (572)
+..+|...|++++|...|++..+. -+.+...+..+...+.+.|++++|++.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQ-----APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555555542 1223445555555555555555555555443
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.38 E-value=1.5e-10 Score=111.94 Aligned_cols=240 Identities=10% Similarity=0.008 Sum_probs=161.3
Q ss_pred HHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 008265 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRD-LVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (572)
Q Consensus 194 ~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (572)
|..+...+...|++++|+..++.. |.+...|+.+..++...|+ +++|+..|++..+.... +...|+.+-.++.+
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 333444444445555554444432 3444677777777888885 88888888888775432 56778888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChHHH--
Q 008265 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL-AGNTVLA-- 343 (572)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a-- 343 (572)
.|++++|+..|+++.+.. +-+...|..+-.++ .|++++|+..++++.+.... +...|+.+..++.+ .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHH
Confidence 888888888888887653 12344554444433 37888888888888876544 67788888888888 5555777
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccc--cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcC------
Q 008265 344 ---QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK--WWQMALKVKEDMLSAGVTPNTITWSSLINACANAG------ 412 (572)
Q Consensus 344 ---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g------ 412 (572)
+..|++...+ -+-+...|+.+...+.+.| ++++|++.+.++ +. ...+...+..+..+|.+.|
T Consensus 257 ~~el~~~~~Al~l-----~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 257 EREVQYTLEMIKL-----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHH-----STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 4778777764 1335668888888888877 688888888887 33 2335577788888888764
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 008265 413 ---LVEQAMHLFEEM-LQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 413 ---~~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~ 444 (572)
..++|.++++++ .+.. +.....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 258899999888 5542 223455655555443
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.37 E-value=7.7e-11 Score=107.05 Aligned_cols=199 Identities=9% Similarity=0.017 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
..+..+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|.+.|++..+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---------------- 86 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL---------------- 86 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------
Confidence 345555566666666666666666665532 224555555666666666666666666555443
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
.. .+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++
T Consensus 87 -----------------~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 87 -----------------DS-SAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-----GMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp -----------------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TCCSHHHHHHHHHHHHHTSCHHH
T ss_pred -----------------CC-cchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccHHH
Confidence 21 24566666777777778888888877777663 13456677777777777888888
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
|+..++++.+... .+...+..+...+.+.|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.+++..+
T Consensus 144 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 144 ALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 8888877766532 255667777777888888888888888777653 34566777777888888888888888887765
Q ss_pred c
Q 008265 462 S 462 (572)
Q Consensus 462 ~ 462 (572)
.
T Consensus 222 ~ 222 (243)
T 2q7f_A 222 I 222 (243)
T ss_dssp H
T ss_pred c
Confidence 4
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.36 E-value=7.9e-11 Score=106.98 Aligned_cols=196 Identities=13% Similarity=0.034 Sum_probs=119.3
Q ss_pred cchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 008265 191 LDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (572)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 266 (572)
...+..+...+...|++++|...++.. |.+...+..+...+...|++++|...|+...+... .+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence 355777888999999999998888764 55668888999999999999999999999987643 3678888999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 008265 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346 (572)
Q Consensus 267 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 346 (572)
...|++++|.+.|+++.+.. |+ +...+..+...+.+.|++++|...
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~--~~--------------------------------~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG--ME--------------------------------NGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT--CC--------------------------------SHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CC--------------------------------CHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999887652 11 223344455555556666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
++++.+. .+.+...+..+...+.+.|++++|++.++++.+... .+..++..+..+|...|++++|.+.++++.+
T Consensus 148 ~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 148 LQRAVEL-----NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHH-----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHh-----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 6655542 123445555555566666666666666665554421 1344555566666666666666666666655
Q ss_pred c
Q 008265 427 A 427 (572)
Q Consensus 427 ~ 427 (572)
.
T Consensus 222 ~ 222 (243)
T 2q7f_A 222 I 222 (243)
T ss_dssp H
T ss_pred c
Confidence 4
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.35 E-value=1.3e-10 Score=114.58 Aligned_cols=319 Identities=14% Similarity=0.011 Sum_probs=206.8
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCC-Ccc
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA-PLE 148 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~ 148 (572)
....+......+...|++++|+..|+...+....... ....++..+...+...|++++|+..+++.....-. .+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 3566777888899999999999999999987543111 12345667777888999999999999887654110 111
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHH
Q 008265 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (572)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li 228 (572)
.. ...++......+...|++++|+..+++..+......+ .. ....++..+.
T Consensus 84 ~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~----------~~~~~~~~l~ 134 (406)
T 3sf4_A 84 LG---EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------KV----------GEARALYNLG 134 (406)
T ss_dssp HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------------HH----------HHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----------------cc----------chHHHHHHHH
Confidence 11 1222222222334578888888888776542110000 00 0014667777
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 229 REFGKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 229 ~~~~~~g~--------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
..|...|+ +++|.+.++...+. +..+ ....+..+...|...|++++|.+.|++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 78888888 88888887765432 1111 23467777788888888888888887776
Q ss_pred hCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-
Q 008265 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL- 361 (572)
Q Consensus 284 ~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~- 361 (572)
+. .. +.+. .....++..+...|...|++++|...+++...........+
T Consensus 215 ~~--------------------------~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 265 (406)
T 3sf4_A 215 LI--------------------------AK---EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265 (406)
T ss_dssp HH--------------------------HH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HH--------------------------HH---hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence 42 00 0000 00134677788888999999999999998876542221111
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHC----CCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQA----GCEP- 431 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p- 431 (572)
...++..+...|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|.+.+++..+. +..+
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 345 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSG 345 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 1457788888999999999999999887653 1111 1456788888999999999999999987642 2111
Q ss_pred CHHHHHHHHHHHHHhCCHh
Q 008265 432 NSQCCNILLQACVEACQFD 450 (572)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~ 450 (572)
...++..+...+...|+..
T Consensus 346 ~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 346 ELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHhhHhH
Confidence 2455667777777777653
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.35 E-value=1.3e-10 Score=107.65 Aligned_cols=232 Identities=10% Similarity=-0.003 Sum_probs=153.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH-
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN--IYVFNSLMNV- 300 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~- 300 (572)
+......+...|++++|...|+...+... .+...+..+...|...|++++|...|++..+.+..++ ...|..+-..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34455666677777777777777766432 2334566666677777777777777777766432222 1223333333
Q ss_pred -hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccH
Q 008265 301 -NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (572)
Q Consensus 301 -~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 379 (572)
..|++++|+..|++..+.... +...+..+...|...|++++|...|++..+. .+.+...|..+...+...+++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----CCCcHHHHHHHHHHHHHHHHH
Confidence 336777777777777665433 5567888888888888888888888887652 233555666666233344588
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHHhCCH
Q 008265 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGL---VEQAMHLFEEMLQAG-CEPN------SQCCNILLQACVEACQF 449 (572)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~ 449 (572)
++|++.|+++.+.... +...+..+..++...|+ .++|...+++..+.. -.|+ ..+|..+...|.+.|++
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 8888888888776322 35667777777777777 777888888776531 1232 25677788888888999
Q ss_pred hHHHHHHHHhhhcc
Q 008265 450 DRAFRLFRSWTLSK 463 (572)
Q Consensus 450 ~~A~~~~~~m~~~~ 463 (572)
++|.+.|++..+..
T Consensus 238 ~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 238 VKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999888887654
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=1.1e-10 Score=115.39 Aligned_cols=288 Identities=12% Similarity=0.004 Sum_probs=190.3
Q ss_pred HhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch-hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchH
Q 008265 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL-FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE 194 (572)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (572)
+......+...|++++|+..|++..+. .|+.. .....+..+.. .+...|++++|+..+++..+.....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~---~~~~~g~~~~A~~~~~~al~~~~~~------ 119 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGN---AYFYLGDYNKAMQYHKHDLTLAKSM------ 119 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHH---HHHHHTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHHHHHc------
Confidence 334555678899999999999999887 33321 11112222222 3345799999999988765421000
Q ss_pred HHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHhc
Q 008265 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH----LS-SPNMYICRTIIDVCGIC 269 (572)
Q Consensus 195 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~ 269 (572)
++. +.....+..+...|...|++++|...|++..+. +- ......+..+...|...
T Consensus 120 ----------~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 120 ----------NDR----------LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp ----------TCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------cCc----------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 000 001256677788888888888888888776543 11 11244677788888888
Q ss_pred CC-----------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 270 GD-----------------YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332 (572)
Q Consensus 270 g~-----------------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 332 (572)
|+ +++|.+.+++.. .+...... ......++..+..
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al--------------------------~~~~~~~~--~~~~~~~~~~la~ 231 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENL--------------------------KLMRDLGD--RGAQGRACGNLGN 231 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH--------------------------HHHHHHTC--HHHHHHHHHHHHH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHH--------------------------HHHHHcCC--HHHHHHHHHHHHH
Confidence 88 555555555433 22222210 0112346777888
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCC-----CchhhHHHHHH
Q 008265 333 ACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-----PNTITWSSLIN 406 (572)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~~~~~li~ 406 (572)
.|...|++++|...+++..+...... .......+..+...|...|++++|.+.+++..+.... ....++..+..
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999999877542210 0111237788889999999999999999887654110 11467888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 407 ACANAGLVEQAMHLFEEMLQA----GCE-PNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.|...|++++|...+++..+. +.. ....++..+...|.+.|++++|.+.|++..+.
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999999988653 111 12357788889999999999999999987653
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.34 E-value=3.5e-10 Score=104.73 Aligned_cols=185 Identities=14% Similarity=0.029 Sum_probs=98.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC---CCch----hHHHHHHHHHHhcC
Q 008265 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---PRAD----ILFCNFVREFGKKR 235 (572)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~----~~~~~li~~~~~~g 235 (572)
..+...|++++|+..|++..+. .|.+...+..+...+...|++++|+..++.. +.+. ..|..+...+...|
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 3445678888888888887764 3455556666666666666666666665543 1111 23556666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHhc-CChHHHHHHHH
Q 008265 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVNA-HDLKFTLEVYK 313 (572)
Q Consensus 236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~a~~~~~ 313 (572)
++++|...|+...+... .+...|..+...|...|++++|...|++..+.. +.+...|..+- ..+. +++++|...|+
T Consensus 89 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655422 234556666666666666666666666665541 11222332222 2221 34455555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHH
Q 008265 314 NMQKLGVMADMASYNILLKACCLAGN---TVLAQEIYGEVKH 352 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~ 352 (572)
++.+.... +...+..+..++...|+ +++|...++++.+
T Consensus 167 ~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 167 KVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 44443211 23334444444444444 4444444444444
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.33 E-value=2.9e-10 Score=110.03 Aligned_cols=231 Identities=8% Similarity=0.025 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD-YMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 300 (572)
..|..+...+.+.|++++|+..|+...+... -+...|+.+..++...|+ +++|+..|++..+... -+...|+.+-.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 6788899999999999999999999988643 357889999999999997 9999999999998632 244555555444
Q ss_pred --hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cc
Q 008265 301 --NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AK 377 (572)
Q Consensus 301 --~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g 377 (572)
..|++++|+..|+++.+.... +...|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.+ .|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-----P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-----VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTC
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcC
Confidence 348999999999999987654 78899999999999999999999999999842 4467799999999998 66
Q ss_pred cHHHH-----HHHHHHHHHCCCCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC---
Q 008265 378 WWQMA-----LKVKEDMLSAGVTPNTITWSSLINACANAG--LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC--- 447 (572)
Q Consensus 378 ~~~~a-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--- 447 (572)
..++| ++.+++..+.... +...|+.+...+...| +.++|.+.+.++ +. -..+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 65777 5888888776332 5678888888888888 689999999888 33 2456788889999998874
Q ss_pred ------CHhHHHHHHHHh-hhcc
Q 008265 448 ------QFDRAFRLFRSW-TLSK 463 (572)
Q Consensus 448 ------~~~~A~~~~~~m-~~~~ 463 (572)
..++|.++|+++ .+.+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHHHhC
Confidence 358999999998 5544
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.32 E-value=2e-10 Score=109.75 Aligned_cols=295 Identities=14% Similarity=0.015 Sum_probs=174.1
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCC-Ccch
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA-PLEL 149 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~ 149 (572)
...+......+...|++++|+..|++..+...... .....++..+...+...|++++|+..+++..+.... ++..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL----KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 80 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence 34555667778889999999999999988744311 112445667777888999999999999887654100 1111
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHH
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~ 229 (572)
. ...++......+...|++++|+..+++..+......+ .. ....++..+..
T Consensus 81 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~----------~~~~~~~~l~~ 131 (338)
T 3ro2_A 81 G---EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------KV----------GEARALYNLGN 131 (338)
T ss_dssp H---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------HH----------HHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------------ch----------HHHHHHHHHHH
Confidence 1 1222222222334578888888887765442110000 00 00136667777
Q ss_pred HHHhcCC--------------------HHHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 230 EFGKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (572)
Q Consensus 230 ~~~~~g~--------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 284 (572)
.+...|+ +++|.+.++...+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 132 VYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp HHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777 77887777665332 1111 234667777778888888888888877654
Q ss_pred CCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CH
Q 008265 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DV 363 (572)
Q Consensus 285 ~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~ 363 (572)
. .... ........++..+...+...|++++|...+++...........+ ..
T Consensus 212 ~--------------------------~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 212 I--------------------------AKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp H--------------------------HHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred H--------------------------HHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 2 0000 00001123566777788888888888888888776432211011 13
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHCC----CCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTP-NTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
.++..+...|...|++++|...+++..+.. ..+ ...++..+...|.+.|++++|...+++..+
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 456666677777777777777777664321 000 123455566666666666666666666654
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.31 E-value=4.8e-10 Score=107.06 Aligned_cols=288 Identities=11% Similarity=-0.014 Sum_probs=186.4
Q ss_pred hhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHH
Q 008265 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (572)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 196 (572)
......+...|++++|+..|+++.+. .|+... ....++......+...|++++|+..+++..+.....
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------- 76 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLK--TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-------- 76 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh--CcccHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--------
Confidence 33445677888999999999888876 333210 011222222223344788888888877654321000
Q ss_pred HHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCc----HHHHHHHHHHHHhcCC
Q 008265 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPN----MYICRTIIDVCGICGD 271 (572)
Q Consensus 197 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~g~ 271 (572)
++. +....++..+...+...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 77 --------~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 77 --------GDQ----------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp --------TCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------ccc----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 000 00124667778888888888888888887654311 112 3367777777888887
Q ss_pred --------------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008265 272 --------------------YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331 (572)
Q Consensus 272 --------------------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 331 (572)
+++|.+.+++..+ +..... ........+..+.
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~--------------------------~~~~~~--~~~~~~~~~~~l~ 190 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS--------------------------LVTALG--DRAAQGRAFGNLG 190 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHH--------------------------HHHHHT--CHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH--------------------------HHHhcC--CHHHHHHHHHHHH
Confidence 5555555554432 111110 0011234677788
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC----CCCC-chhhHHHHH
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVTP-NTITWSSLI 405 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li 405 (572)
..+...|++++|...+++..+...... ......++..+...+...|++++|.+.+++..+. +..+ ...++..+.
T Consensus 191 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (338)
T 3ro2_A 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 270 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 889999999999999999876532211 1112337888889999999999999999987643 1111 145678888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 406 NACANAGLVEQAMHLFEEMLQA----GCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
..|...|++++|...+++..+. +-.+ ...++..+...+.+.|++++|.+.+++..+.
T Consensus 271 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 271 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999988653 1111 1447788899999999999999999987653
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.30 E-value=3.6e-10 Score=111.68 Aligned_cols=296 Identities=14% Similarity=0.018 Sum_probs=197.4
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCC-CCcch
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV-APLEL 149 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~ 149 (572)
...+..+...+...|++++|+..|++..+....-. .....++..+...+...|++++|+..+++..+..- ..+..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL----RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh----hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 55666778888999999999999999998754311 11134566777888999999999999988766410 01111
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHH
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~ 229 (572)
. ....+......+...|++++|+..+++..+..... ++. +....++..+..
T Consensus 124 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~----------~~~~~~~~~l~~ 174 (411)
T 4a1s_A 124 G---EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----------------GDR----------LSEGRALYNLGN 174 (411)
T ss_dssp H---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------TCH----------HHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh----------------hch----------HHHHHHHHHHHH
Confidence 1 22222222233445788888888888765421000 000 001246677778
Q ss_pred HHHhcCC-----------------HHHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008265 230 EFGKKRD-----------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (572)
Q Consensus 230 ~~~~~g~-----------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 287 (572)
.|...|+ +++|.+.+++..+. +..+ ....+..+...|...|++++|.+.|++..+.
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 252 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI-- 252 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--
Confidence 8888888 88888887765432 1111 2347777888888999999999888877643
Q ss_pred CCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCC-CCCCHHHH
Q 008265 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTY 366 (572)
Q Consensus 288 ~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~ 366 (572)
..... ........+..+...|...|++++|...+++......... ......++
T Consensus 253 ------------------------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 306 (411)
T 4a1s_A 253 ------------------------AREFG--DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSC 306 (411)
T ss_dssp ------------------------HHHHT--CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------HHhcC--CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00000 0000134677788889999999999999998877543211 01124578
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCC----CC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAG----VT-PNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g----~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
..+...|...|++++|.+.+++..+.. .. ....++..+...|.+.|++++|.+.+++..+.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 888899999999999999999876541 11 11346788899999999999999999998764
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.29 E-value=2.2e-10 Score=112.89 Aligned_cols=271 Identities=15% Similarity=0.070 Sum_probs=172.4
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 243 (572)
.+...|++++|+..|++..+.. |.+.... ..++..+...+...|++++|...
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~--------------------------~~~~~~l~~~~~~~g~~~~A~~~ 69 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVG--TEDLKTL--------------------------SAIYSQLGNAYFYLHDYAKALEY 69 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSCHHHH--------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--cccHHHH--------------------------HHHHHHHHHHHHHhcCHHHHHHH
Confidence 4455677777777777766642 2221100 13455556666666666666666
Q ss_pred HHHHHhc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHh--cCC-------
Q 008265 244 YDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLN----IYVFNSLMNVN--AHD------- 304 (572)
Q Consensus 244 ~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~--~~~------- 304 (572)
++...+. +..| ....+..+...|...|++++|...+++..+... .++ ..++..+-..+ .|+
T Consensus 70 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 149 (406)
T 3sf4_A 70 HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP 149 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccccc
Confidence 6654321 1111 134556666666777777777777666543200 011 11222222222 255
Q ss_pred -------------hHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHH
Q 008265 305 -------------LKFTLEVYKNMQKL----GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFT 365 (572)
Q Consensus 305 -------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 365 (572)
+++|...+.+..+. +..+ ...++..+...|...|++++|...+++..+........+ ...+
T Consensus 150 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (406)
T 3sf4_A 150 QDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229 (406)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 66676666655431 1111 234677888899999999999999999887543321111 1337
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHC----CCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHH
Q 008265 366 YSTIVKVFADAKWWQMALKVKEDMLSA----GVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQA----GCEP-NSQC 435 (572)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~ 435 (572)
+..+...|...|++++|...+++..+. +..+. ..++..+...|...|++++|...+++..+. +-.+ ...+
T Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 309 (406)
T 3sf4_A 230 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 888899999999999999999987643 11111 457888999999999999999999998753 1111 1557
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 436 CNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
+..+...|.+.|++++|.+.+++..+.
T Consensus 310 ~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 310 CWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888889999999999999999987653
No 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=4.8e-10 Score=105.91 Aligned_cols=239 Identities=10% Similarity=-0.006 Sum_probs=158.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCC
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKH-------LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVT 288 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~ 288 (572)
.++..+...+...|++++|..+|+.+.+. ........+..+...|...|++++|...|++..+. +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67888899999999999999999988763 22334567888999999999999999999988754 212
Q ss_pred C-CHHHHHHHHHHh--cCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC-
Q 008265 289 L-NIYVFNSLMNVN--AHDLKFTLEVYKNMQKL------GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG- 357 (572)
Q Consensus 289 p-~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~- 357 (572)
| ....+..+...+ .|++++|...+++..+. +..| ....+..+...+...|++++|...|+++.......
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2 234444444443 37899999999888764 2222 34567778888889999999999999988753221
Q ss_pred -CCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHC-------CCCCchhhHH-------HHHHHHHHcCCHHHHHHHH
Q 008265 358 -VLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSA-------GVTPNTITWS-------SLINACANAGLVEQAMHLF 421 (572)
Q Consensus 358 -~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~-------~li~~~~~~g~~~~a~~~~ 421 (572)
...| ...++..+...|...|++++|.+.++++.+. ...+...... .+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 0122 2347788888899999999999999988753 1122222222 2222233334444555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 422 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
....... ..+..++..+..+|.+.|++++|.+.|++..+
T Consensus 268 ~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5554332 33457788999999999999999999998764
No 62
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.25 E-value=4.3e-09 Score=104.98 Aligned_cols=346 Identities=9% Similarity=-0.081 Sum_probs=215.3
Q ss_pred HHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCCh---hHHHHHHHHhhhcCCCCcchhhh
Q 008265 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRI---DCVVGVLKKLNELGVAPLELFDG 152 (572)
Q Consensus 76 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~ 152 (572)
.+...+.+.|++++|.++|+...+.|.... +..+...+...|+. ++|+..|++..+. .|+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A----------~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~--- 72 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEA----------QVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQ--- 72 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTG----------GGTCC------------------------------CH---
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHH----------HHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHH---
Confidence 356677889999999999999987763322 23344445667777 8999999988765 44322
Q ss_pred hhhHHHHHHHHHH--hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHH---HHhhhcCC--CchhHHH
Q 008265 153 SGFKLLKNECQRL--LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLA---IRYACIVP--RADILFC 225 (572)
Q Consensus 153 ~~~~~l~~~~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a---~~~~~~~~--~~~~~~~ 225 (572)
..+-..+... ...++.++|+..|++..+.|. ...+..|...|...+..+.+ .+.+.... .......
T Consensus 73 ---~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~----~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~ 145 (452)
T 3e4b_A 73 ---ARLGRLLAAKPGATEAEHHEAESLLKKAFANGE----GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGL 145 (452)
T ss_dssp ---HHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC----SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHH
T ss_pred ---HHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHH
Confidence 1111111110 012589999999999887552 34677888888877665443 33333221 2235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG---DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 302 (572)
.|...|...+.++.+......+.+.-...+...+..+-..|.+.| +.++|++.|++..+.|. ++...+..+-..+.
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLG 224 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 788888888855544444333322211223337788888889999 99999999999999874 34443233322222
Q ss_pred ------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008265 303 ------HDLKFTLEVYKNMQKLGVMADMASYNILLKA-C--CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (572)
Q Consensus 303 ------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (572)
++.++|...|++.. .| +...+..+... + ...+++++|...|++..+ . -+...+..|...|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~---~----g~~~A~~~Lg~~y 293 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA---A----DQPRAELLLGKLY 293 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH---T----TCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---C----CCHHHHHHHHHHH
Confidence 58999999999987 33 45566666666 3 468999999999999886 2 2677777787777
Q ss_pred Hccc-----cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 374 ADAK-----WWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 374 ~~~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
. .| ++++|++.|++.. . -+...+..|-..|.. ..+.++|...|++..+.|. ++ ....|...|.
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~ 365 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFS 365 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHH
T ss_pred H-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHH
Confidence 7 55 9999999999887 3 355667777777766 3489999999999988773 33 3445555554
Q ss_pred H----hCCHhHHHHHHHHhhhcc
Q 008265 445 E----ACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 445 ~----~g~~~~A~~~~~~m~~~~ 463 (572)
. ..+.++|...|+...+.|
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTC
T ss_pred hCCCCCCCHHHHHHHHHHHHHCC
Confidence 3 458899999998876654
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.24 E-value=2.8e-09 Score=92.14 Aligned_cols=166 Identities=14% Similarity=0.070 Sum_probs=103.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 219 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
++..+|..+...|.+.|++++|.+.|++..+..+ -+...|..+..+|.+.|++++|...+......... +...+..+-
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 3456788888888889999999999988877643 25678888888888888888888888887765211 122222221
Q ss_pred H--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 008265 299 N--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (572)
Q Consensus 299 ~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 376 (572)
. ...++++.+...+.+..+.... +...+..+...|.+.|++++|++.|++..+. -+.+..+|..+..+|.+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISI-----KPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----cchhhhHHHHHHHHHHHC
Confidence 1 2235566666666655554322 4555555566666666666666666665553 123444556666666666
Q ss_pred ccHHHHHHHHHHHHHC
Q 008265 377 KWWQMALKVKEDMLSA 392 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~ 392 (572)
|++++|++.|++..+.
T Consensus 155 g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEK 170 (184)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC
Confidence 6666666666665543
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.23 E-value=4e-09 Score=103.04 Aligned_cols=238 Identities=8% Similarity=-0.062 Sum_probs=122.6
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008265 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (572)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 245 (572)
...|++++|+..+++..+.-...++.. ....++..+...|...|++++|...+.
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRI--------------------------EKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHH--------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHH--------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456888888888887665311111100 011466677777777788877777777
Q ss_pred HHHhcC--C----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 008265 246 ASKKHL--S----SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (572)
Q Consensus 246 ~m~~~~--~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~ 318 (572)
+..+.. . .....+++.+...|...|++++|...|++..+..- .++..
T Consensus 168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------- 221 (383)
T 3ulq_A 168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ-------------------------- 221 (383)
T ss_dssp HHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------------------
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH--------------------------
Confidence 654421 1 01234677777888888888888888877654200 00100
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC----C
Q 008265 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----G 393 (572)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g 393 (572)
....++..+...|...|++++|...|++..+....... +....++..+...|.+.|++++|.+.+++..+. +
T Consensus 222 ---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 298 (383)
T 3ulq_A 222 ---LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298 (383)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 01123444455555555555555555555443222112 223445555555555555555555555544322 1
Q ss_pred CCCchhhHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 394 VTPNTITWSSLINACANAGL---VEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
-......+..+...|...|+ .++|..++++. +..|+ ...+..+...|.+.|++++|.+.|++..+
T Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 299 DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11111223444455555555 44444444443 21222 23445555666666666666666665544
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=4.4e-10 Score=106.15 Aligned_cols=245 Identities=9% Similarity=-0.024 Sum_probs=148.7
Q ss_pred hhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCC---C
Q 008265 69 SRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV---A 145 (572)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~---~ 145 (572)
.....+..+...+...|++++|+.+|+.+.+...............++..+...+...|++++|+..+++..+..- .
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3478899999999999999999999999987421100000111355667778889999999999999998877510 0
Q ss_pred CcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC------CCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC
Q 008265 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF------RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (572)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 219 (572)
++... ....+......+...|++++|+..+++..+. +..+.....+..+...+...|++++|+++++....
T Consensus 105 ~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 105 KDHPA---VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp TTCHH---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCChH---HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 2222233333445689999999999988765 33344556677888888999999998888766311
Q ss_pred ---------c---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCC-------cHHHHHHHHHHHHhcCCHH
Q 008265 220 ---------A---DILFCNFVREFGKKRDLVSALRAYDASKKHL-------SSP-------NMYICRTIIDVCGICGDYM 273 (572)
Q Consensus 220 ---------~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------~~~-------~~~~~~~ll~~~~~~g~~~ 273 (572)
. ..++..+...|...|++++|.+.|++..+.. ..+ ....+..+...+...+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 1 2567778888889999999999888876521 111 1112222333334444455
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHH
Q 008265 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQK 317 (572)
Q Consensus 274 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~ 317 (572)
++...+....... +.+..++..+..++. |++++|...|++..+
T Consensus 262 ~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 262 EYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555554331 122344555544443 788888888887765
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=1.8e-08 Score=95.05 Aligned_cols=182 Identities=15% Similarity=0.095 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H-HHHHHHHHh--cCChHHHHHHHH
Q 008265 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-Y-VFNSLMNVN--AHDLKFTLEVYK 313 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~-~~~~ll~~~--~~~~~~a~~~~~ 313 (572)
++|..+|++..+.-.+-+...|..+...+.+.|++++|.++|++..+. .|+. . .|..+...+ .|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 677777777666311224456777777777777777777777777664 3321 1 333333332 244555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 314 NMQKLGVMADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+..+.... +...|........ ..|+.++|..+|+...+.. +-+...|..++..+.+.|++++|..+|++....
T Consensus 159 ~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 55443221 2222322222211 1455666666665555431 223445555555555555666666666555554
Q ss_pred C-CCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 393 G-VTP--NTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 393 g-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
. +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 232 2334555555555555555555555555543
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.22 E-value=2.1e-09 Score=105.12 Aligned_cols=210 Identities=8% Similarity=-0.047 Sum_probs=152.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
+......+...|++++|...|+...+. +-.+ ...+|..+...|...|++++|...+++..+.
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~------------- 172 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI------------- 172 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------
Confidence 334667788889999999999988663 1111 2457888888899999999999988876542
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccc
Q 008265 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAK 377 (572)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 377 (572)
+..... .......+++.+...|...|++++|...|.+..+......-.+ ...++..+...|...|
T Consensus 173 -------------~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 173 -------------YKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp -------------HHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -------------HHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 111000 0001234677888899999999999999999887643321111 2348999999999999
Q ss_pred cHHHHHHHHHHHHHC----CC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHhCC
Q 008265 378 WWQMALKVKEDMLSA----GV-TPNTITWSSLINACANAGLVEQAMHLFEEMLQA----GCEPNSQCCNILLQACVEACQ 448 (572)
Q Consensus 378 ~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~ 448 (572)
++++|++.+++..+. +. .....++..+...|.+.|++++|...+++..+. +-+.....+..+...+...|+
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 999999999998772 33 334577899999999999999999999988652 212223345677778888888
Q ss_pred ---HhHHHHHHHHhh
Q 008265 449 ---FDRAFRLFRSWT 460 (572)
Q Consensus 449 ---~~~A~~~~~~m~ 460 (572)
+++|..++++..
T Consensus 319 ~~~~~~al~~~~~~~ 333 (383)
T 3ulq_A 319 EEAIQGFFDFLESKM 333 (383)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCc
Confidence 888888888764
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.21 E-value=1.5e-08 Score=95.68 Aligned_cols=217 Identities=15% Similarity=0.092 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCC-CHHHHHHHHHHh-
Q 008265 238 VSALRAYDASKKHLSSPNMYICRTIIDVCG-------ICGDY-------MKSRAIYEDLRSQNVTL-NIYVFNSLMNVN- 301 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~- 301 (572)
+.|..+|++..+.. +-+...|..+...+. +.|++ ++|..+|++..+. +.| +...|..+...+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 67888998887753 346677877777765 35886 9999999999983 134 455677766654
Q ss_pred -cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-cccc
Q 008265 302 -AHDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA-DAKW 378 (572)
Q Consensus 302 -~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~ 378 (572)
.|++++|..+|++..+.... +.. .|..+...+.+.|++++|..+|++..+.. +.+...|........ ..|+
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-----RTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-----TCCTHHHHHHHHHHHHTSCC
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHcCC
Confidence 48999999999999985322 233 89999999999999999999999998631 234445544433322 3699
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHhCCHhHHHHH
Q 008265 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEP--NSQCCNILLQACVEACQFDRAFRL 455 (572)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~ 455 (572)
+++|..+|++..+... -+...|..++..+.+.|+.++|..+|++..+.. +.| ....|..++....+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999987632 256788999999999999999999999999863 455 467899999999999999999999
Q ss_pred HHHhhhcc
Q 008265 456 FRSWTLSK 463 (572)
Q Consensus 456 ~~~m~~~~ 463 (572)
++++.+..
T Consensus 264 ~~~a~~~~ 271 (308)
T 2ond_A 264 EKRRFTAF 271 (308)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99987654
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.20 E-value=6e-09 Score=89.97 Aligned_cols=167 Identities=14% Similarity=0.032 Sum_probs=103.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (572)
Q Consensus 255 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (572)
+...|..+-..|.+.|++++|++.|++..+.. |+ +...+..+..+|
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~--------------------------------~~~~~~~la~~~ 49 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PN--------------------------------NVETLLKLGKTY 49 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT--------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------------------------------CHHHHHHHHHHH
Confidence 45677777777777788888877777776541 22 344555566666
Q ss_pred HHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCH
Q 008265 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (572)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 414 (572)
.+.|++++|...+...... .+.+...+..+...+...++++.|.+.+.+..+.... +...+..+...|.+.|++
T Consensus 50 ~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~ 123 (184)
T 3vtx_A 50 MDIGLPNDAIESLKKFVVL-----DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEH 123 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCc
Confidence 6666666666666666542 1334445555556666666666666666666554222 445566666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
++|++.|++..+.. +.+..+|..+..+|.+.|++++|.+.|++..+.
T Consensus 124 ~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 124 DKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 66666666666543 334566666666666667777776666665543
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=1.7e-09 Score=108.68 Aligned_cols=215 Identities=9% Similarity=-0.052 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHH
Q 008265 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY-MKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYK 313 (572)
Q Consensus 237 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~ 313 (572)
++++...++..... .+.+...|..+...|...|++ ++|.+.|++..+.. +-+...|..+-.++. |++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444443332 122445555555555566666 66666665555442 112334443333322 55666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--------
Q 008265 314 NMQKLGVMADMASYNILLKACCLA---------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA-------- 376 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 376 (572)
+..+. .|+...+..+...|... |++++|+..|++..+. .+.+...|..+..+|...
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 65553 34556666677777777 8889999999988874 234577888888888888
Q ss_pred ccHHHHHHHHHHHHHCCCC--CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 008265 377 KWWQMALKVKEDMLSAGVT--PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (572)
|++++|++.|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..++...|++++|.+
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998876220 266788889999999999999999999988764 4456778888888888999998888
Q ss_pred HHHHhhh
Q 008265 455 LFRSWTL 461 (572)
Q Consensus 455 ~~~~m~~ 461 (572)
.+.++..
T Consensus 314 ~~~~~~~ 320 (474)
T 4abn_A 314 SKGKTKP 320 (474)
T ss_dssp HTTTCCH
T ss_pred HhccccC
Confidence 7765543
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=7e-10 Score=111.48 Aligned_cols=215 Identities=12% Similarity=-0.017 Sum_probs=136.6
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL-VSALRAYDA 246 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~ 246 (572)
.+.+++++..++..... .+.+...+..+...+...| ++ ++|++.|++
T Consensus 81 ~~~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g------------------------------~~~~~A~~~~~~ 128 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTP------------------------------DYSPEAEVLLSK 128 (474)
T ss_dssp HHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSS------------------------------SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhcc------------------------------ccHHHHHHHHHH
Confidence 35677788877776543 3444444444444444444 44 455555554
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--c---------CChHHHHHHHHHH
Q 008265 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--A---------HDLKFTLEVYKNM 315 (572)
Q Consensus 247 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~---------~~~~~a~~~~~~m 315 (572)
..+... -+...|..+...|.+.|++++|.+.|++..+. .|+...+..+-..+ . |++++|+..|++.
T Consensus 129 al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a 205 (474)
T 4abn_A 129 AVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205 (474)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH
Confidence 444321 13445555555555555555555555555544 23333333332222 2 3456666666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccccHHHHHH
Q 008265 316 QKLGVMADMASYNILLKACCLA--------GNTVLAQEIYGEVKHLEAKGVLK---LDVFTYSTIVKVFADAKWWQMALK 384 (572)
Q Consensus 316 ~~~~~~~~~~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~ 384 (572)
.+.... +...|..+..+|... |++++|...|++..+.. + .+...|..+..+|...|++++|++
T Consensus 206 l~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~ 279 (474)
T 4abn_A 206 VQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALE 279 (474)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 654332 567788888888887 88999999999998741 2 377889999999999999999999
Q ss_pred HHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 385 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
.|++..+.... +...+..+...+...|++++|.+.+..+
T Consensus 280 ~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 280 GFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99998876322 4567888888888888888888765443
No 72
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=5.6e-07 Score=93.09 Aligned_cols=385 Identities=8% Similarity=-0.017 Sum_probs=231.6
Q ss_pred chhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCC---hhHHHH
Q 008265 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR---IDCVVG 134 (572)
Q Consensus 58 ~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~ 134 (572)
.+-+.+..+|.. ...|..++..+.+.+.++.+..+|+.+...-+.. ...+...+..-.+.++ ++.+..
T Consensus 54 ~lE~~l~~np~d-~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~--------~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 54 KLNDMIEEQPTD-IFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLM--------ANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHCcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHhhCCcchHHHHHH
Confidence 366677777865 9999999999999999999999999999884431 2223333444456677 999999
Q ss_pred HHHHhhhcCC-CCcchhhhhhhHHHHHHHHHHhh-----hhhHHHHHHHHHHHHh-CCC-CCcccchHHHHHHHHhc---
Q 008265 135 VLKKLNELGV-APLELFDGSGFKLLKNECQRLLD-----SGEVEMFVGLMEVLEE-FRL-PVKELDEEFRIVQLCVN--- 203 (572)
Q Consensus 135 ~~~~m~~~~~-~p~~~~~~~~~~~l~~~~~~~~~-----~g~~~~a~~~~~~~~~-~~~-~~~~~~~~~~ll~~~~~--- 203 (572)
+|++...... .|+.. +...+++-...... .+..+...++|+..+. .|. .+.....|...+.-...
T Consensus 125 lfeRal~~~~~~~sv~----LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 125 VLARCLSKELGNNDLS----LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHTCSSSCCCCHH----HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhcCCCCCHH----HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 9999988741 24443 33333332222111 1123445577776443 465 56655667766654432
Q ss_pred ------CCChHHHHHhhhcCCC---c--hhHHH---HHHHHH----------HhcCCHHHHHHHHHHHHhc--CCC----
Q 008265 204 ------KPDVNLAIRYACIVPR---A--DILFC---NFVREF----------GKKRDLVSALRAYDASKKH--LSS---- 253 (572)
Q Consensus 204 ------~g~~~~a~~~~~~~~~---~--~~~~~---~li~~~----------~~~g~~~~a~~~~~~m~~~--~~~---- 253 (572)
+++++.+.++|+.... . ..+|. .+-... -...+++.|..++.++... ++.
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 3346677777776432 2 12332 221111 0112344455555543211 111
Q ss_pred -----------C-----c---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcCCh
Q 008265 254 -----------P-----N---MYICRTIIDVCGICG-------DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDL 305 (572)
Q Consensus 254 -----------~-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~ 305 (572)
| + ...|...+..--..+ ..+.+..+|++.... ++-+...|-..... ..++.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 1 0 235555555433322 123455667776654 12244444444443 23677
Q ss_pred HHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-------hCCCCC------------CHHH
Q 008265 306 KFTL-EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA-------KGVLKL------------DVFT 365 (572)
Q Consensus 306 ~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~------------~~~~ 365 (572)
++|. .+|+..... ++.+...|-..+...-+.|+++.|..+|+.+..... .+ .| ...+
T Consensus 360 ~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~--~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 360 STVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED--DPTNESAINQLKSKLTYV 436 (679)
T ss_dssp TTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc--cCcchhhhhhhccchHHH
Confidence 7886 889888764 334666677788888889999999999998876310 00 13 1346
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHC-CCCCchhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 366 YSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNTITWSSLINACANA-GLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (572)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 443 (572)
|...+....+.|+.+.|..+|....+. +. .....|...+..-.+. ++.+.|..+|+...+. ++-+...+...++-.
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 888888888889999999999998875 21 1222332222222233 4589999999998876 344666677888888
Q ss_pred HHhCCHhHHHHHHHHhhh
Q 008265 444 VEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~ 461 (572)
...|+.+.|..+|++...
T Consensus 515 ~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHTCHHHHHHHHHHHTT
T ss_pred HhCCCHHHHHHHHHHHHH
Confidence 888999999999988764
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=3.4e-08 Score=96.26 Aligned_cols=209 Identities=11% Similarity=0.029 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKH----LS-SP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 295 (572)
.++..+...|...|+++.|...+.+..+. +. .+ ...+++.+...|...|++++|.+.|++..+.
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~---------- 211 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL---------- 211 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----------
Confidence 56777888888888888888888776542 11 11 2457778888888889999998888877542
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008265 296 SLMNVNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (572)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 374 (572)
. .+.+-. ....++..+...|...|++++|...|++..........+....++..+...|.
T Consensus 212 ----------------~---~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 212 ----------------A---MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp ----------------H---HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred ----------------H---HHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 0 000000 01234455555666666666666666665543221112223456666666666
Q ss_pred ccccHHHHHHHHHHHHHCCC----CCchhhHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHh
Q 008265 375 DAKWWQMALKVKEDMLSAGV----TPNTITWSSLINACANAGL---VEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEA 446 (572)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 446 (572)
+.|++++|...+++..+... ......+..+...|...++ +.+|..++++ .+..|+ ...+..+...|.+.
T Consensus 273 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHC
Confidence 66666666666666554321 1112233444444445555 4455554444 221222 23445566666777
Q ss_pred CCHhHHHHHHHHhhhc
Q 008265 447 CQFDRAFRLFRSWTLS 462 (572)
Q Consensus 447 g~~~~A~~~~~~m~~~ 462 (572)
|++++|...|++..+.
T Consensus 350 g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 350 CHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777777777665543
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.17 E-value=6.5e-07 Score=92.61 Aligned_cols=413 Identities=8% Similarity=0.009 Sum_probs=255.0
Q ss_pred hhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHh
Q 008265 87 LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLL 166 (572)
Q Consensus 87 ~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~ 166 (572)
..+.+..|+..+...+ . +...+..++..+.+.+.++.+..+|+.+... .|. ....+.+.+..-.
T Consensus 48 ~~d~i~~lE~~l~~np--~------d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~------~~~lW~~Yi~~E~ 111 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP--T------DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPL------MANIWCMRLSLEF 111 (679)
T ss_dssp CSCHHHHHHHHHHHCT--T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc--C------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCC------CHHHHHHHHHHHH
Confidence 3445555666655533 2 1445556666667788999999999999887 454 3333333333334
Q ss_pred hhhh---HHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCCh--------HHHHHhhhc--------CCCchhHHHHH
Q 008265 167 DSGE---VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV--------NLAIRYACI--------VPRADILFCNF 227 (572)
Q Consensus 167 ~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~--------~~a~~~~~~--------~~~~~~~~~~l 227 (572)
+.++ .+.+..+|++.......++++..|..-+.-..+.++. +...++|+. -+.....|...
T Consensus 112 ~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Y 191 (679)
T 4e6h_A 112 DKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEY 191 (679)
T ss_dssp TC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred hhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 5677 9999999999887653235556777666544443332 223345543 23445778777
Q ss_pred HHHHH---------hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhC
Q 008265 228 VREFG---------KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-------------CGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 228 i~~~~---------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~m~~~ 285 (572)
+.... ..++++.+..+|+.........-..+|......-.. ..+++.|...+.++...
T Consensus 192 i~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~ 271 (679)
T 4e6h_A 192 LHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI 271 (679)
T ss_dssp HHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 76654 244678899999998863111122344322221111 11234455555543211
Q ss_pred --CCC---------------C-----C---HHHHHHHHHHhcCC---------hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008265 286 --NVT---------------L-----N---IYVFNSLMNVNAHD---------LKFTLEVYKNMQKLGVMADMASYNILL 331 (572)
Q Consensus 286 --g~~---------------p-----~---~~~~~~ll~~~~~~---------~~~a~~~~~~m~~~~~~~~~~~~~~ll 331 (572)
++. | + ...|...+.---.+ ...+..+|++..... +-+...|-..+
T Consensus 272 ~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya 350 (679)
T 4e6h_A 272 TKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMA 350 (679)
T ss_dssp TTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred HHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 211 1 1 13444444432222 233556788877653 33778888888
Q ss_pred HHHHHcCChHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCC---------CCc----
Q 008265 332 KACCLAGNTVLAQ-EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV---------TPN---- 397 (572)
Q Consensus 332 ~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------~p~---- 397 (572)
.-+...|+.++|. .+|+..... ++.+...|-..+....+.|++++|.++|+.+.+... .|+
T Consensus 351 ~~~~~~~~~~~a~r~il~rAi~~-----~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~ 425 (679)
T 4e6h_A 351 NYQGEKNTDSTVITKYLKLGQQC-----IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA 425 (679)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence 8888899999996 999998763 455677788888889999999999999999876410 132
Q ss_pred --------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHh-CCHhHHHHHHHHhhhcccccc
Q 008265 398 --------TITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCNILLQACVEA-CQFDRAFRLFRSWTLSKTQVA 467 (572)
Q Consensus 398 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~ 467 (572)
...|...+....+.|..+.|..+|.+..+. + ......|......-.+. ++.+.|.++|+...+.-
T Consensus 426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~---- 500 (679)
T 4e6h_A 426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF---- 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH----
T ss_pred hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC----
Confidence 236888888888899999999999999875 2 22333443332222333 45899999999876531
Q ss_pred cccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCC
Q 008265 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLS 545 (572)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~ 545 (572)
.-+...|..+++-... +.+.|..+|++.......
T Consensus 501 --------------------------------------------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 501 --------------------------------------------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp --------------------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred --------------------------------------------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 2345556666654443 568888899888775432
Q ss_pred C--CHHHHHHHHHHHHccCCccccccc
Q 008265 546 P--NHISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 546 p--~~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
+ ....|...+.--.+.|+.+.+.++
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2 234677777777778888776554
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=3.2e-08 Score=96.18 Aligned_cols=284 Identities=14% Similarity=0.002 Sum_probs=179.5
Q ss_pred hhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHH
Q 008265 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (572)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 198 (572)
....+...|++++|...+++........+.......+..+. ..+...|++++|...+++........
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~al~~~~~~---------- 86 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLG---EVLHCKGELTRSLALMQQTEQMARQH---------- 86 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHH---HHHHHHTCHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH---HHHHhcCcHHHHHHHHHHHHHHHHhc----------
Confidence 34456688999999999999877531111111111222222 22344799999999888765421110
Q ss_pred HHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--C-cHHHHHHHHHHHHhcCC
Q 008265 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH----LSS--P-NMYICRTIIDVCGICGD 271 (572)
Q Consensus 199 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~g~ 271 (572)
|+... ...++..+...+...|++++|.+.++...+. +.. | ....+..+...+...|+
T Consensus 87 ------~~~~~----------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 87 ------DVWHY----------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp ------TCHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred ------CcHHH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 11000 0134566778888889999999888876542 221 2 23456667788888999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 272 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
+++|...+++........ +......++..+...+...|++++|...+++..
T Consensus 151 ~~~A~~~~~~al~~~~~~-----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 151 LDEAEASARSGIEVLSSY-----------------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHHHHTTTS-----------------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcc-----------------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988876531100 111123456667778888899999999998887
Q ss_pred HHHHhCCCCCCHHHHH----HHHHHHHccccHHHHHHHHHHHHHCCCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 352 HLEAKGVLKLDVFTYS----TIVKVFADAKWWQMALKVKEDMLSAGVTPN---TITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 352 ~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
....... .+ ..... ..+..+...|++++|...+++.......+. ...+..+...+...|++++|...+++.
T Consensus 202 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 202 NLLGNGK-YH-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHTTSC-CC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhccC-cc-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6532211 11 11111 233447788999999999988765432211 224567778888999999999999887
Q ss_pred HHc----CCCCCH-HHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 425 LQA----GCEPNS-QCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 425 ~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
... |..++. .++..+..++...|+.++|...+++....
T Consensus 280 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 280 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 642 222222 35666777888999999999999887653
No 76
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.11 E-value=1.2e-07 Score=94.63 Aligned_cols=270 Identities=12% Similarity=0.036 Sum_probs=167.6
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCCh---HHHHHhhhcCCC-chhHHHHHHHHHHhcC-----C
Q 008265 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV---NLAIRYACIVPR-ADILFCNFVREFGKKR-----D 236 (572)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~-~~~~~~~li~~~~~~g-----~ 236 (572)
.+.|++++|+.+|++..+.| +...+..+...|...|+. ++|...|+.... +...+..|...+...| +
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 34799999999999988765 334566677777778888 899999887643 3345666666555555 7
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHhcC----ChHHHH
Q 008265 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM---KSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLKFTL 309 (572)
Q Consensus 237 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~a~ 309 (572)
+++|...|+...+.|... .+..+...|...+..+ ++.+.+......|. |.....-..+....+ +.+.+.
T Consensus 90 ~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-PEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-TTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCcccCHHHHH
Confidence 899999999998876432 5566666676665433 45555555555554 333332223332223 344444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----ccHHHH
Q 008265 310 EVYKNMQKLGVMADMASYNILLKACCLAG---NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----KWWQMA 382 (572)
Q Consensus 310 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a 382 (572)
.++...... +...+..+...|.+.| +.++|...|+...+ .| .++...+..|...|... +++++|
T Consensus 166 ~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~---~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 166 RICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVS---RG--TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp HHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---TT--CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred HHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH---CC--CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 444444332 3337778888888899 88889999988876 33 45666656777777654 689999
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC-----CHhHHHH
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINA-C--ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC-----QFDRAFR 454 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~ 454 (572)
++.|++.. . -+...+..|... + ...++.++|.+.|++..+.| +...+..|...|. .| ++++|.+
T Consensus 237 ~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 99999987 3 244556666665 3 45889999999999998876 5667777777776 55 8999999
Q ss_pred HHHHhh
Q 008265 455 LFRSWT 460 (572)
Q Consensus 455 ~~~~m~ 460 (572)
.|++..
T Consensus 309 ~~~~Aa 314 (452)
T 3e4b_A 309 HFEKAV 314 (452)
T ss_dssp HHHTTT
T ss_pred HHHHHh
Confidence 998765
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.06 E-value=1.6e-07 Score=91.21 Aligned_cols=290 Identities=12% Similarity=0.007 Sum_probs=166.5
Q ss_pred hHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCC-Ccchh
Q 008265 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA-PLELF 150 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~ 150 (572)
..+......+...|++++|...+++........+.+ ....++..+...+...|++++|...+++....... ++..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~- 90 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY---SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH- 90 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchh---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH-
Confidence 334445556677899999999999988764322211 12334555666788899999999999887764211 1111
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHH
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~ 230 (572)
.....+......+...|++++|...+++..+......... .+.....+..+...
T Consensus 91 --~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~------------------------~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 91 --YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ------------------------LPMHEFLVRIRAQL 144 (373)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT------------------------STHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc------------------------CcHHHHHHHHHHHH
Confidence 0111122222233457999999998887654311000000 00011345566777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHH--
Q 008265 231 FGKKRDLVSALRAYDASKKHLSS----PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN--IYVFN----SLM-- 298 (572)
Q Consensus 231 ~~~~g~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~----~ll-- 298 (572)
+...|++++|...+++..+.... .....+..+...+...|++++|...+++.....-.++ ..... ...
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 77788888888888776543221 1235667777778888888888888887654311111 11111 111
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 008265 299 NVNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFA 374 (572)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~ 374 (572)
....|+.++|...+++.......+ ....+..+...+...|++++|...++............++. ..+..+..++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 113467777777776665432111 12245566677778888888888887776543222111122 24555566666
Q ss_pred ccccHHHHHHHHHHHHH
Q 008265 375 DAKWWQMALKVKEDMLS 391 (572)
Q Consensus 375 ~~g~~~~a~~~~~~m~~ 391 (572)
..|+.++|...+++...
T Consensus 305 ~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 77777777777766653
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.06 E-value=3.2e-08 Score=85.12 Aligned_cols=134 Identities=13% Similarity=0.046 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.+... .+...+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 114 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLAD-----APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRF 114 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHH
Confidence 4566677777788888888888888887763 234566777788888888888888888888776532 3566777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+...+...|++++|.++++++.+.. +.+...+..+...+.+.|++++|.+.+++..+..
T Consensus 115 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 115 RLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 78888888888888888888887764 4467788888888888899999998888876543
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.05 E-value=3e-08 Score=96.56 Aligned_cols=208 Identities=12% Similarity=-0.020 Sum_probs=150.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKHLS-SP----NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
+......+...|++++|...|++..+... .+ ....+..+...|...|+++.|...+++..+.
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~------------- 170 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI------------- 170 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------------
Confidence 34456667788999999999988765411 12 2457778888888999999998888876542
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcc
Q 008265 299 NVNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-GVLKLDVFTYSTIVKVFADA 376 (572)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~ 376 (572)
+.... +.. ....+++.+...|...|++++|...|.+..+.... +.......++..+...|...
T Consensus 171 -------------~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 171 -------------YQNHP--LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp -------------HHTST--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHhCC--CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11000 000 12456777888899999999999999888775332 32334556899999999999
Q ss_pred ccHHHHHHHHHHHHH-----CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHhC
Q 008265 377 KWWQMALKVKEDMLS-----AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG----CEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 377 g~~~~a~~~~~~m~~-----~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g 447 (572)
|++++|++.+++..+ .... ...++..+...|.+.|++++|...+++..+.. -+.....+..+...+...+
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999887 4322 36778889999999999999999999988632 1222345566666677777
Q ss_pred C---HhHHHHHHHHhh
Q 008265 448 Q---FDRAFRLFRSWT 460 (572)
Q Consensus 448 ~---~~~A~~~~~~m~ 460 (572)
+ +++|..++++..
T Consensus 315 ~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 315 DERKIHDLLSYFEKKN 330 (378)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhCC
Confidence 7 888888887643
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.03 E-value=4.6e-08 Score=84.10 Aligned_cols=164 Identities=9% Similarity=-0.002 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
..+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...++++.+.. |
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~------------ 73 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--P------------ 73 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C------------
Confidence 345556666667777777777776665542 2345566666677777777777777776665431 1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
.+...+..+...+...|++++|...++++... .+.+...+..+...+...|++++
T Consensus 74 --------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~ 128 (186)
T 3as5_A 74 --------------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPINFNVRFRLGVALDNLGRFDE 128 (186)
T ss_dssp --------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred --------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHHHHcCcHHH
Confidence 13344445555555556666666666555542 12344555555555666666666
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
|.+.++++.+... .+...+..+...+...|++++|.+.+++..+
T Consensus 129 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 129 AIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666665554421 2345555566666666666666666665543
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=7.7e-09 Score=95.93 Aligned_cols=223 Identities=12% Similarity=0.052 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHh--cCChHHH
Q 008265 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVTLN-IYVFNSLMNVN--AHDLKFT 308 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~~~~~ll~~~--~~~~~~a 308 (572)
++|++++........+....++..+...|...|++++|...|++..+. +-.|. ..++..+-..+ .|++++|
T Consensus 25 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 104 (283)
T 3edt_B 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104 (283)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 345555555543322334668889999999999999999999988754 22222 33444444443 3789999
Q ss_pred HHHHHHHHHc-----CC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh--CCCCC-CHHHHHHHHHHHHcccc
Q 008265 309 LEVYKNMQKL-----GV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKL-DVFTYSTIVKVFADAKW 378 (572)
Q Consensus 309 ~~~~~~m~~~-----~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~-~~~~~~~li~~~~~~g~ 378 (572)
...+.+..+. +. +....++..+...|...|++++|...++++.+.... +...| ...++..+...|...|+
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 184 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 9999888764 22 122456777888888999999999999998875211 10122 34578888888999999
Q ss_pred HHHHHHHHHHHHHC-------CCCCchh-hHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 379 WQMALKVKEDMLSA-------GVTPNTI-TWSSLINACANAGLV------EQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 379 ~~~a~~~~~~m~~~-------g~~p~~~-~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
+++|.+.+++..+. ...+... .|..+...+...+.. .++...+..... .......++..+...|.
T Consensus 185 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~ 263 (283)
T 3edt_B 185 YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYR 263 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHH
Confidence 99999999888753 1222222 233333333322222 222222211110 11223457888899999
Q ss_pred HhCCHhHHHHHHHHhhh
Q 008265 445 EACQFDRAFRLFRSWTL 461 (572)
Q Consensus 445 ~~g~~~~A~~~~~~m~~ 461 (572)
+.|++++|..+|++..+
T Consensus 264 ~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 264 RQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988654
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.00 E-value=3.4e-08 Score=103.38 Aligned_cols=130 Identities=14% Similarity=0.081 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
..++..+..+|.+.|++++|++.|++..++. +-+...|..+..+|.+.|++++|++.|++..+.... +...|+.
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-----P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~ 116 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRIS-----PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSN 116 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 3444455555555555555555555555421 123445555555555555555555555555544211 3345555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
+..+|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|.+.+++..
T Consensus 117 Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 117 LASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 5555555555555555555555542 2234555555555556666655555555543
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.99 E-value=2.8e-08 Score=104.00 Aligned_cols=164 Identities=9% Similarity=0.005 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (572)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 300 (572)
...++.|...|.+.|++++|++.|++..+... -+...|+.+..+|.+.|++++|++.|++..+. .|+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~---------- 75 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT---------- 75 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC----------
Confidence 35677777777777777777777777766432 24567777777777777777777777776654 222
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHH
Q 008265 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (572)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (572)
+...|..+..+|.+.|++++|++.|++..++. +-+...|+.+..+|.+.|+++
T Consensus 76 ----------------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-----P~~~~a~~~Lg~~~~~~g~~~ 128 (723)
T 4gyw_A 76 ----------------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-----PAFADAHSNLASIHKDSGNIP 128 (723)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHH
Confidence 23445555555555555555555555555421 223445555555555555555
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
+|++.|++..+.... +...|..+..+|...|++++|.+.+++..
T Consensus 129 eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 129 EAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 555555555544211 33445555555555555555555555443
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=3.9e-07 Score=83.64 Aligned_cols=207 Identities=12% Similarity=0.013 Sum_probs=138.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHH
Q 008265 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311 (572)
Q Consensus 232 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~ 311 (572)
--.|.+..++.-. .+.........---+.++|...|+++.. ..-.|....+..+.....++ ++..
T Consensus 24 fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~~~---a~~~ 88 (310)
T 3mv2_B 24 YYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLDTK---NIEE 88 (310)
T ss_dssp HTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHTTT---CCHH
T ss_pred HHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhccc---HHHH
Confidence 3456776666622 2211122223333455777777776532 11234433444444433333 6677
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Q 008265 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (572)
Q Consensus 312 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (572)
|++....+ .++..++..+..++...|++++|++++.+... .+...-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~---~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID---NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77776654 45666667888999999999999999998754 220013566888899999999999999999999987
Q ss_pred CCCCC-----chhhHHHHHHHH--HHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 392 AGVTP-----NTITWSSLINAC--ANAG--LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 392 ~g~~p-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
. .| +..+...+..++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6 56 356666666663 3334 899999999999765 46644444555589999999999999997764
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.93 E-value=1.5e-08 Score=93.87 Aligned_cols=159 Identities=9% Similarity=-0.042 Sum_probs=108.7
Q ss_pred hhcCChhHHHHHHHHHHhhc-----C-ChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcC---CCCcchhhh
Q 008265 82 AKDGRLEEFAMIVESVVVSE-----G-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG---VAPLELFDG 152 (572)
Q Consensus 82 ~~~g~~~~A~~~~~~m~~~~-----~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~ 152 (572)
...|++++|+.+|++..+.- . .|. ...++..+...+...|++++|+..+++..+.. ..++...
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-- 83 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPD------VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA-- 83 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH--
Confidence 44677888888887776532 1 122 35567778888999999999999999887751 0011111
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC------CCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC-------
Q 008265 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF------RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR------- 219 (572)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------- 219 (572)
...++......+...|++++|+..+++..+. ...|.....+..+...+...|++++|...++....
T Consensus 84 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 84 -VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp -HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred -HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2222333333445689999999999988764 11344556677888888888998888887765311
Q ss_pred -----chhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 220 -----ADILFCNFVREFGKKRDLVSALRAYDASKK 249 (572)
Q Consensus 220 -----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 249 (572)
...++..+...|...|++++|...+++..+
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 125677788888888888888888887765
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=1.5e-07 Score=86.44 Aligned_cols=184 Identities=13% Similarity=0.021 Sum_probs=111.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 275 SRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
|...|+++.+.+ .++...+..+-.+ ..|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 2333333222222 22666666666666554443 1245667777788888888888888888887
Q ss_pred HHHHhCCCCC-----CHHHHHHHHHHHHc----cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 008265 352 HLEAKGVLKL-----DVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (572)
Q Consensus 352 ~~~~~~~~~~-----~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 422 (572)
+ ..| +..+...|+.++.. .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++
T Consensus 164 ~------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 164 N------AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp H------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred h------cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 6 355 24555555555332 33788888888888665 4443333444447788888888888888
Q ss_pred HHHHc-----CC----CCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccc
Q 008265 423 EMLQA-----GC----EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469 (572)
Q Consensus 423 ~m~~~-----~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 469 (572)
.+.+. +. +-+..+...+|......|+ +|.++++++++..+..+..
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 66542 10 2345666566655556676 7788888887766544443
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=1.3e-07 Score=76.33 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 405 (572)
.+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++.+.+. .+...+..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHH
Confidence 4566777888889999999999888763 134667788888888888999999999988877642 2566778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
..+...|++++|.++++++.+.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888999999999999888764 446777888888888999999999998887653
No 88
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.89 E-value=4.9e-07 Score=80.87 Aligned_cols=190 Identities=11% Similarity=0.016 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 008265 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMN 299 (572)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 299 (572)
...+......+.+.|++++|...|+...+....++...+..+..++...|++++|...|++..+. .|+ ...|..+-.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 35667777788888888888888888777654356666666777888888888888888887765 333 233333333
Q ss_pred Hh--cCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC---HHHHH
Q 008265 300 VN--AHDLKFTLEVYKNMQKLGVMADM-------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYS 367 (572)
Q Consensus 300 ~~--~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~ 367 (572)
++ .|++++|+..+++..+.... +. ..|..+...+...|++++|+..|++..+ ..|+ ...|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~ 157 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD------VTSKKWKTDALY 157 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------SSCHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh------cCCCcccHHHHH
Confidence 32 36677777777776654322 33 3455566666667777777777776665 3444 33555
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+...|...|+ .+++++...+.. +...|.... ....+.+++|...+++..+.
T Consensus 158 ~l~~~~~~~~~-----~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 158 SLGVLFYNNGA-----DVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 55555544332 233333332211 222232222 22334466777777776665
No 89
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.87 E-value=5.6e-07 Score=80.49 Aligned_cols=192 Identities=10% Similarity=-0.004 Sum_probs=139.9
Q ss_pred CcccchHHHHHHHHhcCCChHHHHHhhhcC----C-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 008265 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----P-RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTI 262 (572)
Q Consensus 188 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 262 (572)
+.++..+..+...+...|++++|+..|+.. | .+...+..+..++...|++++|...|+...+.... +...|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 344567888999999999999999998863 4 55667777999999999999999999999886432 56788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHH-------HHHHHHH--hcCChHHHHHHHHHHHHcCCCCC---HHHHHH
Q 008265 263 IDVCGICGDYMKSRAIYEDLRSQNVTLN-IYV-------FNSLMNV--NAHDLKFTLEVYKNMQKLGVMAD---MASYNI 329 (572)
Q Consensus 263 l~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~-------~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ 329 (572)
...|...|++++|...|++..+. .|+ ... |..+-.. ..|++++|...|++..+ ..|+ ...+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHH
Confidence 99999999999999999999876 343 312 2222222 34899999999999875 6665 345666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 398 (572)
+..+|...| ..+++++... ...+...|.... ....+.+++|+..+++..+. .|+.
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~-----~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~ 213 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPL-----ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNR 213 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGG-----TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHH-----HHHHHHHHhc-----ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCC
Confidence 666665443 4455555543 123444444443 33467789999999999876 4544
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.82 E-value=4.6e-07 Score=84.54 Aligned_cols=209 Identities=9% Similarity=-0.042 Sum_probs=142.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKH----LSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
|......|...|++++|...|.+..+. |-.++ ..+|+.+..+|.+.|++++|+..|++..+..
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~------------ 107 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF------------ 107 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 344466777888888888888766442 21111 4578888888888889988888888776420
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcc
Q 008265 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA-GNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADA 376 (572)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 376 (572)
...|+...+ ..++..+...|... |++++|+..|++..++......... ..++..+...+.+.
T Consensus 108 -~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 108 -THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp -HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -HHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 001111111 33567778888886 9999999999999875422210111 35688889999999
Q ss_pred ccHHHHHHHHHHHHHCCCCCchh------hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH
Q 008265 377 KWWQMALKVKEDMLSAGVTPNTI------TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS------QCCNILLQACV 444 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~ 444 (572)
|++++|+..|++..+........ .|..+..++...|++++|...|++..+. .|+. ..+..++.++.
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHH
Confidence 99999999999998864332221 5677888899999999999999998753 3332 23445566664
Q ss_pred --HhCCHhHHHHHHHHhhhc
Q 008265 445 --EACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 445 --~~g~~~~A~~~~~~m~~~ 462 (572)
..+++++|...|+++...
T Consensus 250 ~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 250 EGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TTCTTTHHHHHHHHTTSSCC
T ss_pred cCCHHHHHHHHHHhccCCcc
Confidence 356788898888776543
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.76 E-value=6.9e-07 Score=83.37 Aligned_cols=159 Identities=10% Similarity=0.023 Sum_probs=116.9
Q ss_pred cCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHH
Q 008265 302 AHDLKFTLEVYKNMQKL----GVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFA 374 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~ 374 (572)
.|++++|...|.+..+. |-.++ ..+|+.+..+|.+.|++++|+..|++..++....+ .+ -..+++.+...|.
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG-QFRRGANFKFELGEILE 128 (292)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Confidence 35566666555554332 21111 45788889999999999999999999887543221 11 1457888999999
Q ss_pred cc-ccHHHHHHHHHHHHHCCCCC-c----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHH
Q 008265 375 DA-KWWQMALKVKEDMLSAGVTP-N----TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS------QCCNILLQA 442 (572)
Q Consensus 375 ~~-g~~~~a~~~~~~m~~~g~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~ 442 (572)
.. |++++|+..|++..+..... + ..++..+...+.+.|++++|...|++..+....... ..|..+..+
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 208 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 96 99999999999887641110 1 356888999999999999999999999875432221 257778888
Q ss_pred HHHhCCHhHHHHHHHHhhh
Q 008265 443 CVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~ 461 (572)
+...|++++|...|++..+
T Consensus 209 ~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGC
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 9999999999999998764
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.69 E-value=3.3e-06 Score=75.30 Aligned_cols=194 Identities=6% Similarity=-0.050 Sum_probs=126.9
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...+..+...+...|++++|+..|+.+.+..+... ....++..+...+.+.|++++|+..|+++.+. .|+...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCc
Confidence 35566677888999999999999999998744311 11345666778899999999999999999886 454321
Q ss_pred hhhhhHHHHHHHHH---------------HhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhh
Q 008265 151 DGSGFKLLKNECQR---------------LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (572)
Q Consensus 151 ~~~~~~~l~~~~~~---------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 215 (572)
....+-.+..++.. ..+.|+.++|+..|+++.+. .|.+...+........ .....
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~----~~~~~---- 146 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF----LKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH----HHHHH----
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH----HHHHH----
Confidence 11111111111111 11357899999999988865 3554443332211100 00000
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008265 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (572)
Q Consensus 216 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 286 (572)
......+...|.+.|++++|...|+.+.+...... ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01223567788899999999999999887643211 2567888899999999999999999888763
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.68 E-value=1.8e-06 Score=79.00 Aligned_cols=185 Identities=11% Similarity=-0.005 Sum_probs=86.9
Q ss_pred CcccchHHHHHHHHhcCCChHHHHHhhhcC----CCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC-cHHH
Q 008265 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA---DILFCNFVREFGKKRDLVSALRAYDASKKHLS-SP-NMYI 258 (572)
Q Consensus 188 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~-~~~~ 258 (572)
+.+...+..+...+.+.|++++|+..|+.+ |.+ ...+..+..+|.+.|++++|...|+...+... .| ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 334444445555555555555555555443 222 23445555555555555555555555554321 11 1233
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 008265 259 CRTIIDVCGI--------CGDYMKSRAIYEDLRSQNVTLNI-YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNI 329 (572)
Q Consensus 259 ~~~ll~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 329 (572)
+..+..++.+ .|++++|...|+++.+.. |+. ... .+...+..+... ....+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~------------~a~~~~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVD------------DATQKIRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHH------------HHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHH------------HHHHHHHHHHHH----HHHHHHH
Confidence 4444444555 555555555555554431 211 000 000000000000 0111344
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----------ccHHHHHHHHHHHHHC
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----------KWWQMALKVKEDMLSA 392 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 392 (572)
+...|.+.|++++|+..|+.+.+..... ......+..+..+|... |++++|...|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDT--PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTS--TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCC--chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5566667777777777777766521000 01233555556666544 6666777777666654
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.68 E-value=2e-06 Score=69.06 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008265 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337 (572)
Q Consensus 258 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 337 (572)
.|..+...+...|++++|..+|+++.+. +. .+...+..+...+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------------------~~-~~~~~~~~~a~~~~~~ 48 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL---------------------------------DP-RSAEAWYNLGNAYYKQ 48 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------------------CT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc---------------------------------CC-cchhHHHHHHHHHHHh
Confidence 3455555666666666666666665543 21 1344555556666666
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHH
Q 008265 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417 (572)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 417 (572)
|++++|...++++... .+.+...+..+...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|
T Consensus 49 ~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 49 GDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHH
T ss_pred cCHHHHHHHHHHHHHH-----CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHH
Confidence 6666666666666542 133455566666666666677777666666665432 2445566666666667777777
Q ss_pred HHHHHHHHHc
Q 008265 418 MHLFEEMLQA 427 (572)
Q Consensus 418 ~~~~~~m~~~ 427 (572)
...++++.+.
T Consensus 123 ~~~~~~~~~~ 132 (136)
T 2fo7_A 123 IEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcc
Confidence 7776666543
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.67 E-value=1.5e-06 Score=79.45 Aligned_cols=194 Identities=10% Similarity=-0.013 Sum_probs=132.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-C---HHHHHHHHHHHHccccHHHHHHHHHHHHHCCC-CC-
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-D---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TP- 396 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p- 396 (572)
+...+-.+...+.+.|++++|...|+.+.+. .| + ...+..+..+|.+.|++++|+..|++..+... .|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY------GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG------CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 4556666777788888888888888888763 23 2 56777788888888888888888888877522 11
Q ss_pred chhhHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCHHHH-----------------HHHHHHHHHhCCHhH
Q 008265 397 NTITWSSLINACAN--------AGLVEQAMHLFEEMLQAGCEPNSQCC-----------------NILLQACVEACQFDR 451 (572)
Q Consensus 397 ~~~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~ 451 (572)
....+..+..++.. .|++++|...|+++.+.. +-+.... ..+...|.+.|++++
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 23456667777777 888888888888887753 1122222 456778999999999
Q ss_pred HHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHh-----
Q 008265 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC----- 526 (572)
Q Consensus 452 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~----- 526 (572)
|...|+++.+.... .......+..+..+|.
T Consensus 167 A~~~~~~~l~~~p~---------------------------------------------~~~~~~a~~~l~~~~~~~g~~ 201 (261)
T 3qky_A 167 AAVTYEAVFDAYPD---------------------------------------------TPWADDALVGAMRAYIAYAEQ 201 (261)
T ss_dssp HHHHHHHHHHHCTT---------------------------------------------STTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCC---------------------------------------------CchHHHHHHHHHHHHHHhccc
Confidence 99999998754211 0112345555555664
Q ss_pred -------hcHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCccccccc
Q 008265 527 -------TDYYRVKALMNEMRTVGLSPNH----ISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 527 -------~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
++.++|...++...+. .|+. .....+-..+.+.|+++++..+
T Consensus 202 ~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 202 SVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred chhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4568999999999874 4654 3555666666666666665543
No 96
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.59 E-value=3e-06 Score=79.67 Aligned_cols=96 Identities=13% Similarity=-0.014 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 247 (572)
.|++++|.+++++..+... ... +...++++.|...| ..+...|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~~---------~~~~~~~~~A~~~~----------~~a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TSF---------MKWKPDYDSAASEY----------AKAAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCS---------SSCSCCHHHHHHHH----------HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--ccc---------cCCCCCHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHH
Confidence 5899999999987665321 110 11146777777654 45577888899999999998876
Q ss_pred Hhc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 248 KKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (572)
Q Consensus 248 ~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 284 (572)
.+. +-.. -...|+.+...|.+.|++++|...|++..+
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 104 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV 104 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 543 1111 134777788888888888888888887653
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.57 E-value=1.8e-06 Score=88.98 Aligned_cols=151 Identities=8% Similarity=-0.099 Sum_probs=92.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 008265 269 CGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345 (572)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 345 (572)
.|++++|.+.|++..+. .| +...|..+-..+ .|++++|...+++..+.... +...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 36778888888777654 23 344444444443 37788888888887765432 56677777778888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc---CCHHHHHHHHH
Q 008265 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA---GLVEQAMHLFE 422 (572)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~ 422 (572)
.|++..+. .+.+...+..+..+|.+.|++++|.+.+++..+.... +...+..+..++... |+.++|.+.++
T Consensus 79 ~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 79 LLQQASDA-----APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 88877763 1335667777778888888888888888877765322 456677777777777 88888888888
Q ss_pred HHHHcC
Q 008265 423 EMLQAG 428 (572)
Q Consensus 423 ~m~~~~ 428 (572)
+..+.+
T Consensus 153 ~al~~~ 158 (568)
T 2vsy_A 153 AAVAQG 158 (568)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 877654
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.57 E-value=5.9e-06 Score=73.61 Aligned_cols=183 Identities=11% Similarity=0.033 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LN-IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADM--ASYNIL 330 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~-~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l 330 (572)
..+..+...+.+.|++++|...|+++.+.... |. ...+..+..+ ..|++++|...|+++.+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34445555667777777777777777654211 11 1122222222 225666666666665554322111 122223
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchh-hH--------
Q 008265 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI-TW-------- 401 (572)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~-------- 401 (572)
..++.+.|.. .+. .|..+...+...|++++|+..|+++.+. .|+.. .+
T Consensus 85 g~~~~~~~~~-----~~~----------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQ----------------GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHC-----------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH
T ss_pred HHHHHhhhhh-----hhh----------------hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH
Confidence 3333321100 000 0001111122345666666666666554 23321 11
Q ss_pred ---------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 402 ---------SSLINACANAGLVEQAMHLFEEMLQAGCEPN----SQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 402 ---------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
..+...|.+.|++++|...|+++.+. .|+ ...+..+..++.+.|++++|.+.++.+...+.
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 24566788999999999999999876 343 25688889999999999999999998876543
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.55 E-value=1.3e-05 Score=70.31 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=71.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHH----------------HHHHHHccccHHHHHHHHHHHHHC
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYST----------------IVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
....+...|++++|+..|++..+. .|+ ...|.. +..+|.+.|++++|+..|++..+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334455667777777777766652 232 334444 667777777777777777777765
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 008265 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (572)
Q Consensus 393 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 448 (572)
... +...|..+..++...|++++|...|++..+.. +-+...+..+..+|...|+
T Consensus 84 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 84 APN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 322 55667777777777777777777777777653 3356666666666655443
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.55 E-value=3.3e-05 Score=71.54 Aligned_cols=231 Identities=11% Similarity=0.042 Sum_probs=124.7
Q ss_pred hhHHHHHHHHHHhhhhh-HHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCC--ChHHHHHhhhcC----CCchhHHHH
Q 008265 154 GFKLLKNECQRLLDSGE-VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP--DVNLAIRYACIV----PRADILFCN 226 (572)
Q Consensus 154 ~~~~l~~~~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~----~~~~~~~~~ 226 (572)
-|.-++..+....+.|. .++|+.+++.++.. .|.....|+.--..+...| ++++++.+++.+ |++..+|+.
T Consensus 31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~ 108 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNY 108 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHH
Confidence 34444444444444444 46888888888764 5667677777666666666 777777666553 444455554
Q ss_pred HHHHH----Hhc---CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 227 FVREF----GKK---RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQNVTLNIYVFNSL 297 (572)
Q Consensus 227 li~~~----~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~~l 297 (572)
-...+ ... +++++++++++.+.+... -+-.+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+-.
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R 186 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHR 186 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 32222 333 566777777777666532 25566666666666666666 66666666665532 233333322
Q ss_pred HHH--hcCC------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008265 298 MNV--NAHD------LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL-AQEIYGEVKHLEAKGVLKLDVFTYST 368 (572)
Q Consensus 298 l~~--~~~~------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (572)
-.. ..+. ++++++.++++....+. |...|+-+-..+.+.|+..+ +..+..++...+. . -..+...+..
T Consensus 187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~-~-~~~s~~al~~ 263 (306)
T 3dra_A 187 FFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK-D-QVTSSFALET 263 (306)
T ss_dssp HHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG-T-EESCHHHHHH
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC-C-CCCCHHHHHH
Confidence 221 1122 55566666655554433 55566555555555555332 3334443332110 0 1234455555
Q ss_pred HHHHHHccccHHHHHHHHHHHHH
Q 008265 369 IVKVFADAKWWQMALKVKEDMLS 391 (572)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~ 391 (572)
+...|.+.|+.++|.++++.+.+
T Consensus 264 la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 264 LAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHh
Confidence 55566555666666666666554
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.54 E-value=1.9e-06 Score=90.53 Aligned_cols=152 Identities=10% Similarity=-0.075 Sum_probs=129.2
Q ss_pred hcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 301 NAHDLKFTLEVYKNMQ--------KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (572)
Q Consensus 301 ~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 372 (572)
..+++++|++.+++.. +.. +.+...+..+..++.+.|++++|...|+++.+.. +.+...|..+..+
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-----GWRWRLVWYRAVA 476 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----cchHHHHHHHHHH
Confidence 4488999999999988 432 2356778888899999999999999999998752 4467799999999
Q ss_pred HHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHH
Q 008265 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (572)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 452 (572)
|...|++++|++.|++..+.... +...|..+..+|.+.|++++ .+.|++..+.. +-+...|..+..++.+.|++++|
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999887322 56778899999999999999 99999998864 44678899999999999999999
Q ss_pred HHHHHHhhh
Q 008265 453 FRLFRSWTL 461 (572)
Q Consensus 453 ~~~~~~m~~ 461 (572)
.+.|++..+
T Consensus 554 ~~~~~~al~ 562 (681)
T 2pzi_A 554 VRTLDEVPP 562 (681)
T ss_dssp HHHHHTSCT
T ss_pred HHHHHhhcc
Confidence 999988764
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.54 E-value=5.2e-06 Score=72.92 Aligned_cols=178 Identities=10% Similarity=-0.075 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008265 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337 (572)
Q Consensus 258 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 337 (572)
.+-.....+.+.|++++|...|++..+. .|+........ ....... ........+..+|.+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~~~~---------------~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDKNSE---------------ISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCTTSH---------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcchhh---------------hhHHHHHHHHHHHHHC
Confidence 3444455677889999999999988775 34322111110 1111110 1122234577788899
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCC--HH
Q 008265 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL--VE 415 (572)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~ 415 (572)
|++++|+..|++..+. -+-+...+..+...|...|++++|+..|++..+.... +...|..+..+|...|+ .+
T Consensus 68 g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 68 RNYDKAYLFYKELLQK-----APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999998874 1346778888889999999999999999998876332 55677777777765543 33
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.+...+..... ..|....+.....++...|++++|...|++..+
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44555555431 122223344445566778899999999988765
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.53 E-value=1.2e-06 Score=74.78 Aligned_cols=156 Identities=8% Similarity=-0.037 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hc
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NA 302 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 302 (572)
+..+...+.+.|++++|...|+...+.. +.+...+..+...+.+.|++++|...|+...... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3345556666677777777776655432 1245566677777777777777777777665442 232222111100 00
Q ss_pred --CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccc
Q 008265 303 --HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAK 377 (572)
Q Consensus 303 --~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 377 (572)
+....+...+++..+.... +...+..+...+...|++++|...|+++.+ ..|+ ...+..+...+...|
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILK------VNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTTTTTHHHHHHHHHHHHHC
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHH------hCcccChHHHHHHHHHHHHHhC
Confidence 1112234444444443221 344455555555555555555555555544 1222 234455555555555
Q ss_pred cHHHHHHHHHHH
Q 008265 378 WWQMALKVKEDM 389 (572)
Q Consensus 378 ~~~~a~~~~~~m 389 (572)
+.++|...|++.
T Consensus 159 ~~~~A~~~y~~a 170 (176)
T 2r5s_A 159 QGNAIASKYRRQ 170 (176)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 555555555443
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.51 E-value=5.1e-06 Score=77.13 Aligned_cols=164 Identities=9% Similarity=-0.030 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (572)
Q Consensus 255 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (572)
+...+..+...+.+.|++++|.+.|++..+. .|+ +...+..+...+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~--------------------------------~~~a~~~la~~~ 161 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQ--------------------------------NGEIGLLLAETL 161 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTS--------------------------------CHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCc--------------------------------chhHHHHHHHHH
Confidence 3344455555556666666666666665543 121 344455555555
Q ss_pred HHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCC
Q 008265 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST-IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (572)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 413 (572)
.+.|++++|...++.+.. ..|+...... ....+.+.++.++|.+.+++..+... .+...+..+...+...|+
T Consensus 162 ~~~g~~~~A~~~l~~~~~------~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~ 234 (287)
T 3qou_A 162 IALNRSEDAEAVLXTIPL------QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGR 234 (287)
T ss_dssp HHTTCHHHHHHHHTTSCG------GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHhCch------hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHccc
Confidence 566666666666555543 2233332211 11224444555555555555554421 134455555566666666
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 414 VEQAMHLFEEMLQAGCE-PNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 414 ~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
+++|...|.++.+..-. .+...+..+...+...|+.++|...|++.
T Consensus 235 ~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 235 NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 66666666666554211 11445566666666666666666655543
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.51 E-value=3.3e-06 Score=78.39 Aligned_cols=163 Identities=12% Similarity=0.001 Sum_probs=113.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (572)
Q Consensus 218 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 297 (572)
|.+...+..+...+.+.|++++|...|+...+... -+...+..+...+.+.|++++|...+++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 34445667788888999999999999999887643 25678888999999999999999999988765 3554332222
Q ss_pred HHH---hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 008265 298 MNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVK 371 (572)
Q Consensus 298 l~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~li~ 371 (572)
... ..++.+.|...+++..+.... +...+..+...+...|++++|...|.++.+. .|+ ...+..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRX------DLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTGGGGHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------ccccccchHHHHHHH
Confidence 221 124566667777776665432 5666777777777777777777777777763 232 456777777
Q ss_pred HHHccccHHHHHHHHHHHH
Q 008265 372 VFADAKWWQMALKVKEDML 390 (572)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~ 390 (572)
.|...|+.++|...+++..
T Consensus 264 ~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHH
Confidence 7777777777776666543
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.50 E-value=2.3e-06 Score=80.44 Aligned_cols=133 Identities=7% Similarity=-0.061 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccccHHHHHHHHHHHHHCC----CCC-ch
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTP-NT 398 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p-~~ 398 (572)
+|+.+...|.+.|++++|...|++..++..... .+. ..+++.+...|.. |++++|++.|++..+.. -.. ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 455566666666777777776666655421110 111 2355566666666 77777777666654321 000 12
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 399 ITWSSLINACANAGLVEQAMHLFEEMLQA----GCEPN-SQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
.++..+...|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|...|++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45666666677777777777777766542 11111 1244555555666677777777776655
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.49 E-value=0.00012 Score=67.81 Aligned_cols=226 Identities=10% Similarity=0.016 Sum_probs=167.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHH--HHHH---
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFN--SLMN--- 299 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~--- 299 (572)
+.....+....++|+++++.+....+. +...|+.--..+...| ++++++++++.+.....+- ...|+ ..+-
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-YQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-HHHHHHHHHHHHHH
Confidence 333444444557899999998886432 4567787777778888 8999999999988764222 22222 2211
Q ss_pred -Hhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008265 300 -VNA---HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV--LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (572)
Q Consensus 300 -~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (572)
... +++++++.+++.+.+...+ +..+|+.-.-.+.+.|+++ ++.+.++.+.+. -+-|...|+.....+
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-----d~~N~sAW~~R~~ll 190 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-----DLKNNSAWSHRFFLL 190 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred HHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH
Confidence 122 6789999999999887655 7888888878888889888 999999999874 245777888877777
Q ss_pred Hcccc------HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHH
Q 008265 374 ADAKW------WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ-AMHLFEEMLQAG--CEPNSQCCNILLQACV 444 (572)
Q Consensus 374 ~~~g~------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~ 444 (572)
.+.+. ++++++.++++...... |...|+.+-..+.+.|+..+ +..+..++.+.+ -..+...+..+.+++.
T Consensus 191 ~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 191 FSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp HSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred HhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 77776 89999999998887554 77889988888888887444 455666654432 1346788899999999
Q ss_pred HhCCHhHHHHHHHHhhh
Q 008265 445 EACQFDRAFRLFRSWTL 461 (572)
Q Consensus 445 ~~g~~~~A~~~~~~m~~ 461 (572)
+.|+.++|.++++.+.+
T Consensus 270 ~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 99999999999999875
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.48 E-value=3.2e-05 Score=68.02 Aligned_cols=173 Identities=12% Similarity=0.009 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc-C----ChHHHHHHHH
Q 008265 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-H----DLKFTLEVYK 313 (572)
Q Consensus 239 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~----~~~~a~~~~~ 313 (572)
+|.+.|....+.| +...+..+-..|...+++++|...|++..+.| +...+..+-..+. + +.++|...|+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSSTTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4556666666653 56666777777777778888888887777765 3333333333322 3 6777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc----cccHHHH
Q 008265 314 NMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFAD----AKWWQMA 382 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~a 382 (572)
+..+.| +...+..+...|.. .+++++|...|++..+ ..++ ...+..|...|.. .+++++|
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~------~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR------DSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS------STTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH------cCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 776654 55666666666665 6778888888887765 2232 5677777777776 6778888
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcC
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANA-G-----LVEQAMHLFEEMLQAG 428 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~ 428 (572)
+..|++..+. ..+...+..|-..|... | +.++|...|+...+.|
T Consensus 149 ~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 149 SEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8888887775 22344566666666543 2 7788888888877766
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.46 E-value=1.6e-06 Score=91.05 Aligned_cols=181 Identities=10% Similarity=-0.057 Sum_probs=131.7
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCC-CHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 267 GICGDYMKSRAIYEDLR--------SQNVTL-NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (572)
Q Consensus 267 ~~~g~~~~a~~~~~~m~--------~~g~~p-~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 335 (572)
...|++++|++.|++.. +. .| +...+..+-.+ ..|++++|+..|++..+.... +...+..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 67788899999988887 32 23 23344443333 348899999999888876433 6778888888999
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHH
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 415 (572)
..|++++|+..|++..+.. +-+...|..+..+|.+.|++++ ++.|++..+.... +...|..+..++.+.|+++
T Consensus 479 ~~g~~~~A~~~~~~al~l~-----P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-----PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-----TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHH
Confidence 9999999999999988741 3356688888889999999999 9999998876432 5677888899999999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCC--------HhHHHHHHHHh
Q 008265 416 QAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQ--------FDRAFRLFRSW 459 (572)
Q Consensus 416 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m 459 (572)
+|.+.|++..+. .|+ ...+..+..++...++ +++|.+.+..+
T Consensus 552 ~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 552 GAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 999999988765 454 4567777777666444 45555555443
No 110
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.44 E-value=1.4e-05 Score=66.83 Aligned_cols=131 Identities=11% Similarity=0.044 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+...+...|++++|...|...... .+.+...+..+...+...|++++|++.+++..+... .+...|..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 86 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHH
Confidence 345677788889999999999999998874 244678899999999999999999999999887642 25678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN--ILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+..++...|++++|...+++..+.. +.+...+. .....+.+.|++++|.+.+.+...
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999998764 33455553 344447788999999999987654
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.43 E-value=8.3e-06 Score=83.98 Aligned_cols=151 Identities=12% Similarity=0.002 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHHHH
Q 008265 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVY 312 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~ 312 (572)
|++++|.+.|++..+... -+...|..+...|.+.|++++|.+.|++..+.. +-+...+..+-.++ .|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 566666666666554321 235566666666777777777777777766542 11234444443332 36677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---ccHHHHHHHHHHH
Q 008265 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA---KWWQMALKVKEDM 389 (572)
Q Consensus 313 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m 389 (572)
++..+.... +...+..+..+|.+.|++++|.+.|++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQL-----LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 776665432 5778899999999999999999999999874 234577889999999999 9999999999999
Q ss_pred HHCC
Q 008265 390 LSAG 393 (572)
Q Consensus 390 ~~~g 393 (572)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 8874
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.42 E-value=6e-06 Score=70.31 Aligned_cols=154 Identities=9% Similarity=-0.049 Sum_probs=90.3
Q ss_pred HHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-HHh
Q 008265 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV-CGI 268 (572)
Q Consensus 194 ~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~ 268 (572)
+..+...+...|++++|+..++.. |.+...+..+...+.+.|++++|...|+...+... +...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 444555566666666666666554 33345666677777777777777777776655432 33322222111 112
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHH
Q 008265 269 CGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQ 344 (572)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~ 344 (572)
.+...+|...|++..+. .|+ ...+..+-.+ ..|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22333456667666654 233 3444443333 3377777777777777654432 3557777888888888888888
Q ss_pred HHHHHHH
Q 008265 345 EIYGEVK 351 (572)
Q Consensus 345 ~~~~~~~ 351 (572)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887665
No 113
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=1.8e-05 Score=71.58 Aligned_cols=200 Identities=9% Similarity=-0.082 Sum_probs=130.9
Q ss_pred hcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhh-------hHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhh-
Q 008265 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASG-------IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG- 154 (572)
Q Consensus 83 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~- 154 (572)
..++...|.+.|.+..+..+.. .+.+... ...+.+.++..+++..+..-.. +.|+.......
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~--------~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~ 87 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESA--------CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAI 87 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEEC
T ss_pred cCCCHHHHHHHHHHHHHhChhh--------hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhcc
Confidence 5799999999999999885531 2233322 2334444555555555554433 34443211111
Q ss_pred --------------hHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc
Q 008265 155 --------------FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA 220 (572)
Q Consensus 155 --------------~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 220 (572)
-.+.+.....+...|++++|.++|+.+...+ |.+. ....+...+.+.+++++|+..|+.....
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 1122222334556899999999998877643 4444 5556667888999999999988765332
Q ss_pred ------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008265 221 ------DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292 (572)
Q Consensus 221 ------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 292 (572)
...+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++... .|+..
T Consensus 165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~ 242 (282)
T 4f3v_A 165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPK 242 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHH
T ss_pred CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH
Confidence 24677788899999999999999998875332243 345566677788889999999999999876 45544
Q ss_pred HHHHH
Q 008265 293 VFNSL 297 (572)
Q Consensus 293 ~~~~l 297 (572)
.+..|
T Consensus 243 ~~~aL 247 (282)
T 4f3v_A 243 VAAAL 247 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 114
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.41 E-value=2.2e-05 Score=61.81 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+...+...|++++|...|+++... .+.+...+..+...+.+.|++++|...++++.+... .+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHH
Confidence 456777888888899999999999888763 234567888888888899999999999988877632 35677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 446 (572)
+...|...|++++|...++++.+.. +.+...+..+...+.+.
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 8888899999999999999887763 33455555555555443
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.39 E-value=1.9e-06 Score=71.13 Aligned_cols=135 Identities=7% Similarity=-0.088 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 304 DLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
++++|+..+...... .| +...+..+...|.+.|++++|++.|++..+. -+-+..+|..+..+|.+.|++++|
T Consensus 12 ~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 12 DVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp HHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCchHHH
Confidence 455555555554332 12 2233455667777888888888888877764 133566777777788888888888
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL-FEEMLQAGCEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g 447 (572)
+..|++..+.... +...|..+...|.+.|+.++|.+. +++..+.. +-+..+|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 8888877765322 456677777777777777665544 46666542 234555555555554444
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.36 E-value=1.7e-05 Score=69.73 Aligned_cols=130 Identities=10% Similarity=-0.100 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 405 (572)
.+..+...+...|++++|...|++.. .|+...|..+...|.+.|++++|++.+++..+... .+...|..+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg 78 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHH
Confidence 34556677888999999999998663 56888999999999999999999999999887642 3567888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC--------------CC-CHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 406 NACANAGLVEQAMHLFEEMLQAGC--------------EP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~~~--------------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
.+|...|++++|.+.|++..+..- .| ....+..+..++.+.|++++|.+.|++..+...
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999999987531 11 236788899999999999999999999876543
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.36 E-value=0.0012 Score=65.94 Aligned_cols=353 Identities=7% Similarity=-0.097 Sum_probs=204.1
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhC-ChhHHHHHHHHhhhc-CCCCcc
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL-GVAPLE 148 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~m~~~-~~~p~~ 148 (572)
..+|...+..+-. |+++.+..+|+..+..-+..+-|.. |..... +.+ ..+....+|+..... |..|+.
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~------Y~~f~~---~~~~~~~~i~~~fe~al~~vg~d~~s 84 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWML------YIEYVR---KVSQKKFKLYEVYEFTLGQFENYWDS 84 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHH------HHHHHH---HHC----CTHHHHHHHHHHSTTCTTC
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHH------HHHHHH---HhCchHHHHHHHHHHHHHHcCCCccc
Confidence 5667766666644 8899999999999987554443332 222222 222 235567777776664 444432
Q ss_pred hhhhhhhHHHHHHHHHH-hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhc---CCCh--------------HHH
Q 008265 149 LFDGSGFKLLKNECQRL-LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN---KPDV--------------NLA 210 (572)
Q Consensus 149 ~~~~~~~~~l~~~~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~--------------~~a 210 (572)
. .+...++.-+... ...++.+.+..+|+..+.. ++.. +..+...|.. ..+. ..|
T Consensus 85 ~---~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~---~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~a 156 (493)
T 2uy1_A 85 Y---GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS---LSELWKDFENFELELNKITGKKIVGDTLPIFQSS 156 (493)
T ss_dssp H---HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT---HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh---HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHH
Confidence 1 2333332211000 1357899999999999873 3222 2222222221 1111 122
Q ss_pred HHhhhcCC----C-chhHHHHHHHHHHhcC--C-----HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 008265 211 IRYACIVP----R-ADILFCNFVREFGKKR--D-----LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (572)
Q Consensus 211 ~~~~~~~~----~-~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 278 (572)
..+++... . +...|...+..-...+ - .+.+..+|++..... +.+...|-..+..+.+.|+.++|..+
T Consensus 157 r~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 157 FQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22221110 0 1124444444432211 1 345677888887753 34577888888888999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHHcCChHHHHHH
Q 008265 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG---------VMA---DMASYNILLKACCLAGNTVLAQEI 346 (572)
Q Consensus 279 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~---------~~~---~~~~~~~ll~~~~~~g~~~~a~~~ 346 (572)
|++.... +.+...|...... ...++. ++.+.+.- ..+ ....|...+....+.++.+.|..+
T Consensus 236 ~erAi~~--P~~~~l~~~y~~~--~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i 308 (493)
T 2uy1_A 236 VERGIEM--SDGMFLSLYYGLV--MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKL 308 (493)
T ss_dssp HHHHHHH--CCSSHHHHHHHHH--TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHhC--CCcHHHHHHHHhh--cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999887 3333333221111 112222 22222110 001 124566666767677889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccc-cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
|+.. . .. ..+...|......-...+ +.+.|..+|+...+.... +...|...++...+.|+.+.|..+|+.+.
T Consensus 309 ~~~A-~---~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 309 FIEL-G---NE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHH-T---TS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHh-h---CC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9988 3 11 123444433222222233 699999999998875321 34456667777788899999999999973
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 426 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.....|...+.-=...|+.+.+..++++...
T Consensus 382 -----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 -----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2467788888777788999999999988764
No 118
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.36 E-value=2.2e-05 Score=62.39 Aligned_cols=120 Identities=11% Similarity=0.053 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
+...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|.+.+.+..+... .+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHH
Confidence 3456777788888999999999999998864 234677888888999999999999999999887632 2467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 449 (572)
.+...+...|++++|...+++..+.. +.+...+..+..++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 88889999999999999999988764 34667777888888777764
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.35 E-value=4.4e-05 Score=67.11 Aligned_cols=175 Identities=10% Similarity=-0.023 Sum_probs=136.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChHHHHHHH
Q 008265 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG----NTVLAQEIY 347 (572)
Q Consensus 274 ~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~ 347 (572)
+|++.|++..+.| +...+..+-. ...+++++|...|++..+.| +...+..+-..|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4677888887775 3444443333 34589999999999998865 66777788888887 6 899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHc----cccHHHHHHHHHHHHHCCCC-CchhhHHHHHHHHHH----cCCHHHHH
Q 008265 348 GEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVT-PNTITWSSLINACAN----AGLVEQAM 418 (572)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~ 418 (572)
++..+ .-+...+..|...|.. .+++++|++.|++..+.|.. .+...+..|-..|.. .++.++|.
T Consensus 77 ~~A~~-------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 77 EKAVE-------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHH-------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHH-------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99975 2367788888888887 88999999999999987542 126778888888988 88999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHh-C-----CHhHHHHHHHHhhhccc
Q 008265 419 HLFEEMLQAGCEPNSQCCNILLQACVEA-C-----QFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 419 ~~~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~~ 464 (572)
..|++..+. ..+...+..|-..|.+. | +.++|...|++..+.|.
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999886 23445677777777664 3 89999999999877663
No 120
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.34 E-value=3.1e-06 Score=69.88 Aligned_cols=122 Identities=7% Similarity=-0.069 Sum_probs=97.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (572)
..+...|++++|+..+..... ..|+ ...+..+...|.+.|++++|++.|++..+.... +...|..+..+|.+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYEL 77 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcc------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 344566788999988888764 2333 346677889999999999999999999887433 67889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHH-HHHhhh
Q 008265 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL-FRSWTL 461 (572)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~ 461 (572)
.|++++|...|++..+.. +-+...+..+...|.+.|++++|.+. +++..+
T Consensus 78 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999874 34678899999999999999876665 566654
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.31 E-value=3.4e-05 Score=61.33 Aligned_cols=108 Identities=13% Similarity=0.035 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
..+......|.+.|++++|+..|++..+. -+.+...|..+..+|.+.|++++|++.+++..+.... +...|..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l 87 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHH
Confidence 45667778888899999999999888774 2446778888888888999999999999888876432 56778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008265 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (572)
..+|...|++++|.+.|++..+.. +-+...+..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 888889999999999998888763 2234444333
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.30 E-value=0.00012 Score=68.00 Aligned_cols=99 Identities=10% Similarity=-0.041 Sum_probs=54.1
Q ss_pred HHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcc----
Q 008265 115 MVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE---- 190 (572)
Q Consensus 115 ~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---- 190 (572)
.+...+..+...|++++|++.+.+..+....... ..............+...|++++|+..+++..+......+
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE--FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH--HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3445566788999999999999887775322111 1111111111222334567999999999887754322211
Q ss_pred cchHHHHHHHHhcCCChHHHHHhhh
Q 008265 191 LDEEFRIVQLCVNKPDVNLAIRYAC 215 (572)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~a~~~~~ 215 (572)
...++.+...|...|++++|+.+++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~ 179 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFE 179 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1234444444444555554444443
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.29 E-value=2.3e-05 Score=62.70 Aligned_cols=119 Identities=14% Similarity=0.091 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhH
Q 008265 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 401 (572)
.+...+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|++.+++..+... .+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 87 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGY 87 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHH
Confidence 35567778888888999999999999988763 134677888888888899999999999998887632 256778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 008265 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 447 (572)
..+..++.+.|++++|.+.|++..+.. +-+...+..+..++.+.|
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 888888999999999999999887753 223455666666665554
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.29 E-value=0.00014 Score=67.57 Aligned_cols=166 Identities=7% Similarity=-0.072 Sum_probs=95.0
Q ss_pred HhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCccc----
Q 008265 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL---- 191 (572)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---- 191 (572)
+...+..+...|++++|..++++..+.. +...........+......+...|++++|+..+++..+......+.
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 3445667889999999999999987752 2111111111111112223345679999999999988754333332
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcCC-------Cch----hHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCc-
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIVP-------RAD----ILFCNFVREFGKKRDLVSALRAYDASKKH----LSSPN- 255 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~- 255 (572)
..++.+...|...|++++|+.+++... .+. .++..+...|.+.|++++|...+++..+. +..+.
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 135666666666677666666655432 211 35556666666666666666666654331 11111
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 008265 256 MYICRTIIDVCGICGD-YMKSRAIYEDLR 283 (572)
Q Consensus 256 ~~~~~~ll~~~~~~g~-~~~a~~~~~~m~ 283 (572)
..+|..+..+|.+.|+ +++|.+.|++..
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4456666666666663 466666665543
No 125
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.28 E-value=1.7e-05 Score=68.98 Aligned_cols=158 Identities=10% Similarity=-0.020 Sum_probs=104.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccccHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK-LDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~ 381 (572)
|++++|.+.++.+.. ........+..+...+...|++++|...+++........... ....++..+...|...|++++
T Consensus 6 g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 6 HDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp -CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 556666664433332 112245667777788888888888888888877643322111 223467777788888899988
Q ss_pred HHHHHHHHHHC----CCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHHhCCHh
Q 008265 382 ALKVKEDMLSA----GVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQAG---CEPN--SQCCNILLQACVEACQFD 450 (572)
Q Consensus 382 a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~~~~~li~~~~~~g~~~ 450 (572)
|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+.. -.+. ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 88888876543 2111 23457777888888899999998888876421 0111 234577778888999999
Q ss_pred HHHHHHHHhhh
Q 008265 451 RAFRLFRSWTL 461 (572)
Q Consensus 451 ~A~~~~~~m~~ 461 (572)
+|.+.+++..+
T Consensus 165 ~A~~~~~~al~ 175 (203)
T 3gw4_A 165 EAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887764
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.28 E-value=2.7e-05 Score=63.99 Aligned_cols=103 Identities=11% Similarity=-0.014 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+...+.+.|++++|...|+.+... -+.+...|..+..+|...|++++|++.|++..+.... +...|..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~ 109 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHH
Confidence 345667777888889999999999988874 1446778888888889999999999999988876432 4577888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 434 (572)
+..+|.+.|++++|...|++..+. .|+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 888899999999999999988876 45543
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.28 E-value=7.1e-05 Score=69.60 Aligned_cols=164 Identities=12% Similarity=-0.004 Sum_probs=78.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-CCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHLS-SPNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LN----IYVFN 295 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~ 295 (572)
..+..+...|++++|..+++...+... .|+. ..+..+...+...|++++|+..|++..+.... ++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346667777778888877777765321 2221 12334555556666777777777776653211 11 11222
Q ss_pred HHHHHh--cCChHHHHHHHHHHHH----c-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHH
Q 008265 296 SLMNVN--AHDLKFTLEVYKNMQK----L-GVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTY 366 (572)
Q Consensus 296 ~ll~~~--~~~~~~a~~~~~~m~~----~-~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~ 366 (572)
.+-.++ .|++++|+..|+++.+ . +..+. ..++..+...|.+.|++++|...+++..+........+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 222222 1444444444444432 1 11111 124445555555555555555555555543222111111 3345
Q ss_pred HHHHHHHHccc-cHHHHHHHHHHH
Q 008265 367 STIVKVFADAK-WWQMALKVKEDM 389 (572)
Q Consensus 367 ~~li~~~~~~g-~~~~a~~~~~~m 389 (572)
..+..+|.+.| .+++|.+.+++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHH
Confidence 55555555555 235555554444
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.25 E-value=0.00012 Score=67.57 Aligned_cols=194 Identities=9% Similarity=-0.117 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
..+..+...+.+.|++++|...|+...+... .+...|..+..+|.+.|++++|...+++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------- 67 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL---------------- 67 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------
Confidence 3455566666666666667666666655422 24556666666666666666666666665543
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
. +-+...+..+..+|...|++++|...|....+.............+..+ ...+..
T Consensus 68 -----------------~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~---- 123 (281)
T 2c2l_A 68 -----------------D-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKK---- 123 (281)
T ss_dssp -----------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHH----
T ss_pred -----------------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHH----
Confidence 1 1245677788889999999999999999988754332111111222222 111111
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHh-CCHhHHHHHHHHh
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC-NILLQACVEA-CQFDRAFRLFRSW 459 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~-g~~~~A~~~~~~m 459 (572)
.+..........+......+ ..+ ..|+.++|.+.+++..+. .|+.... ..+-..+.+. +.+++|.++|.+.
T Consensus 124 ---~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 124 ---RWNSIEERRIHQESELHSYL-TRL-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp ---HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12223333334344443333 333 358889998888887755 5554433 3333334444 6788999999988
Q ss_pred hhcc
Q 008265 460 TLSK 463 (572)
Q Consensus 460 ~~~~ 463 (572)
.+..
T Consensus 197 ~~~~ 200 (281)
T 2c2l_A 197 DEKR 200 (281)
T ss_dssp SCTT
T ss_pred hccc
Confidence 7643
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.25 E-value=1.9e-05 Score=75.15 Aligned_cols=131 Identities=12% Similarity=-0.044 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHccccHHHHHHHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----------------VFTYSTIVKVFADAKWWQMALKVK 386 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~ 386 (572)
+...+..+...|.+.|++++|...|++.... .|+ ...|..+..+|.+.|++++|+..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~------~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW------LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556778888899999999999999999874 333 478999999999999999999999
Q ss_pred HHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHH-HHHHHHhhh
Q 008265 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA-FRLFRSWTL 461 (572)
Q Consensus 387 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 461 (572)
++..+.... +...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.++| ..+|+.|..
T Consensus 220 ~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 220 NKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887432 67889999999999999999999999998874 44678889999999999999988 557777654
No 130
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.24 E-value=0.0033 Score=62.83 Aligned_cols=324 Identities=9% Similarity=-0.045 Sum_probs=163.0
Q ss_pred HHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC-CCCCccc
Q 008265 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF-RLPVKEL 191 (572)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ 191 (572)
..++...+..+-. |+++.+..+|++.... .|+.. ++..+++-.... ....+....+|+..... |..+.+.
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~----LW~~Y~~f~~~~--~~~~~~i~~~fe~al~~vg~d~~s~ 85 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLD----LWMLYIEYVRKV--SQKKFKLYEVYEFTLGQFENYWDSY 85 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHH----HHHHHHHHHHHH--C----CTHHHHHHHHHHSTTCTTCH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHH----HHHHHHHHHHHh--CchHHHHHHHHHHHHHHcCCCcccH
Confidence 3445555555544 8999999999998885 46544 444444433332 11234566677765543 5556666
Q ss_pred chHHHHHHHHhc----CCChHHHHHhhhcC---CCch--hHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh
Q 008265 192 DEEFRIVQLCVN----KPDVNLAIRYACIV---PRAD--ILFCNFVREFGK-------------KRDLVSALRAYDASKK 249 (572)
Q Consensus 192 ~~~~~ll~~~~~----~g~~~~a~~~~~~~---~~~~--~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~ 249 (572)
..|...+.-+.. +++.+.+.++|+.. |... ..|......-.. .+.+..|..+++.+..
T Consensus 86 ~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~ 165 (493)
T 2uy1_A 86 GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQP 165 (493)
T ss_dssp HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 777777765542 35667777777664 3221 233332221111 1122333444444332
Q ss_pred cCCCCcHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHHHHHHcCC
Q 008265 250 HLSSPNMYICRTIIDVCGICG--D-----YMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGV 320 (572)
Q Consensus 250 ~~~~~~~~~~~~ll~~~~~~g--~-----~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~ 320 (572)
.-...+...|...+..-...+ - .+.+..+|+++.... +.+...|-..+.. ..|+.+.|..+++.....
T Consensus 166 ~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-- 242 (493)
T 2uy1_A 166 LIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-- 242 (493)
T ss_dssp HHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Confidence 100013335555444322211 1 234566777766542 2234444444332 336778888888887776
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---H--hCCC---CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLE---A--KGVL---KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~--~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+.+...+. .|....+.++. ++.+.+.. . .+.. .....+|...+....+.++++.|..+|... +.
T Consensus 243 P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~ 314 (493)
T 2uy1_A 243 SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN 314 (493)
T ss_dssp CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence 22322222 23322222211 22222110 0 0000 011235666666666677888888888887 22
Q ss_pred CCCCchhhHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 393 GVTPNTITWSS--LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 393 g~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
. ..+...|.. .+... ..++.+.|..+|+...+.- +-+...+...++-..+.|+.+.|..+|++.
T Consensus 315 ~-~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 315 E-GVGPHVFIYCAFIEYY-ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp S-CCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred C-CCChHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 112233322 22221 2236888888888887652 223445566666667788888888888764
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.23 E-value=8.8e-05 Score=65.06 Aligned_cols=70 Identities=16% Similarity=-0.027 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCC----------CCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----------LKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (572)
+...+..+..+|...|++++|...|+...+...... ..| ....+..+..+|.+.|++++|.+.|++..+
T Consensus 70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345556666666666777777666666665311000 001 124555666666666666666666666665
Q ss_pred C
Q 008265 392 A 392 (572)
Q Consensus 392 ~ 392 (572)
.
T Consensus 150 ~ 150 (213)
T 1hh8_A 150 M 150 (213)
T ss_dssp T
T ss_pred c
Confidence 4
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.22 E-value=2e-05 Score=66.95 Aligned_cols=118 Identities=10% Similarity=0.124 Sum_probs=89.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccccH--
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV-FADAKWW-- 379 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 379 (572)
+++++|...+....+... .+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 24 ~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp ---CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred cCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhcCCcch
Confidence 467777777777766543 366788888888889999999999998888752 3456677777777 7788888
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
++|+..+++..+.... +...+..+...|...|++++|...|++..+.
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999888876322 4567778888888899999999999888875
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.21 E-value=2.5e-05 Score=64.23 Aligned_cols=100 Identities=11% Similarity=-0.112 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|...|++..+.. +-+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 3447788888999999999999999999987432 67889999999999999999999999999874 446788999999
Q ss_pred HHHHhCCHhHHHHHHHHhhhcc
Q 008265 442 ACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+|.+.|++++|...|++..+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999987653
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.20 E-value=0.00018 Score=66.86 Aligned_cols=123 Identities=7% Similarity=-0.019 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHc
Q 008265 303 HDLKFTLEVYKNMQKLG---VMAD--MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFAD 375 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~---~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~ 375 (572)
|++++|+..+.+..+.. ..+. ..+++.+...|...|++++|...|++..+......-.+ ...++..+...|.+
T Consensus 129 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 34555555555544321 1111 34667777777888888888888877764321110011 12466777777777
Q ss_pred cccHHHHHHHHHHHHHCC----CCC-chhhHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 008265 376 AKWWQMALKVKEDMLSAG----VTP-NTITWSSLINACANAGLVEQA-MHLFEEML 425 (572)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 425 (572)
.|++++|+..+++..+.. ... -..+|..+..+|.+.|+.++| ...+++..
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 777777777777665431 111 134566666777777777777 55565544
No 135
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.19 E-value=7.5e-05 Score=59.25 Aligned_cols=102 Identities=8% Similarity=0.028 Sum_probs=88.0
Q ss_pred CCCCH-HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008265 359 LKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (572)
Q Consensus 359 ~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (572)
+.|+. ..+......|.+.|++++|++.|++..+... .+...|..+..+|.+.|++++|+..+++..+.. +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 34443 4677888999999999999999999987743 267889999999999999999999999999874 45688899
Q ss_pred HHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 438 ILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.+..++...|++++|.+.|++..+.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.17 E-value=6.1e-05 Score=65.42 Aligned_cols=156 Identities=12% Similarity=0.008 Sum_probs=67.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHH--hcCCh
Q 008265 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ----NVTLN-IYVFNSLMNV--NAHDL 305 (572)
Q Consensus 233 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~--~~~~~ 305 (572)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+. +..+. ...+..+-.. ..|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1123445555555556666666666655554431 11111 1111111111 12344
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccc
Q 008265 306 KFTLEVYKNMQKL----GVMA--DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAK 377 (572)
Q Consensus 306 ~~a~~~~~~m~~~----~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 377 (572)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++......... .+. ..++..+...+...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCc
Confidence 4444444433221 1111 123455556666666777777776666654322110 111 123445555556666
Q ss_pred cHHHHHHHHHHHH
Q 008265 378 WWQMALKVKEDML 390 (572)
Q Consensus 378 ~~~~a~~~~~~m~ 390 (572)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666665555543
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.16 E-value=7.8e-05 Score=58.52 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 442 (572)
...|..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 56788889999999999999999999987642 356788899999999999999999999998864 4577889999999
Q ss_pred HHHhCCHhHHHHHHHHhhhc
Q 008265 443 CVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~ 462 (572)
+.+.|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999988653
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.15 E-value=0.0001 Score=66.69 Aligned_cols=183 Identities=8% Similarity=-0.121 Sum_probs=84.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------------
Q 008265 233 KKRDLVSALRAYDASKKHLSSPNMYICRTI-------IDVCGICGDYMKSRAIYEDLRSQNVTLNIY------------- 292 (572)
Q Consensus 233 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------------- 292 (572)
..++...|.+.|.+..+.... ....|..+ ...+.+.++..+++..+..-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578888888888888775322 34566655 2333333333333333333222 222210
Q ss_pred ---------HHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC
Q 008265 293 ---------VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (572)
Q Consensus 293 ---------~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 361 (572)
..-.+... -.|++++|.++|..+...+ |+......+...+.+.+++++|+..|+.... .|
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-------~~ 165 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-------WP 165 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-------CS
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-------cC
Confidence 00011111 1245555555555554332 2222333333455555555555555553322 11
Q ss_pred C----HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 362 D----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 362 ~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
+ ...+..+-.++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1 12344455555555555555555555543221132 123344444555555555555555555554
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.11 E-value=1.8e-05 Score=65.04 Aligned_cols=95 Identities=7% Similarity=-0.080 Sum_probs=49.9
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
.+..+...+.+.|++++|+..|+........ +...|..+..+|...|++++|...|++..+.. +.+...+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 4444455555555555555555555544211 44455555555555555555555555555442 223445555555555
Q ss_pred HhCCHhHHHHHHHHhhh
Q 008265 445 EACQFDRAFRLFRSWTL 461 (572)
Q Consensus 445 ~~g~~~~A~~~~~~m~~ 461 (572)
..|++++|.+.|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.11 E-value=0.00014 Score=57.48 Aligned_cols=98 Identities=11% Similarity=-0.007 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++..+.... +...|..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 77 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 345666777888888899999888888774 2345678888888888888888888888888876432 4667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 404 LINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
+..++...|++++|...|++..+.
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888888888764
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.09 E-value=0.00026 Score=58.98 Aligned_cols=61 Identities=15% Similarity=0.049 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHccccHHHHHHHHHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY--STIVKVFADAKWWQMALKVKEDM 389 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m 389 (572)
...+..+..++...|++++|...|++..+.. +.+...+ ..+...+.+.|++++|++.+...
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 4445555556666666666666666665521 1223333 22222344556666666555544
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.09 E-value=3.3e-05 Score=65.61 Aligned_cols=122 Identities=9% Similarity=0.045 Sum_probs=98.7
Q ss_pred HHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHH-HHHcCC
Q 008265 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGL 413 (572)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~ 413 (572)
...|++++|...++..... .+.+...|..+...|...|++++|+..|++..+.... +...+..+..+ +...|+
T Consensus 21 ~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA-----NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHHH-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTT
T ss_pred hhccCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCC
Confidence 4568889999999988763 2456789999999999999999999999999876432 56677778888 778999
Q ss_pred H--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 414 V--EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 414 ~--~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+ ++|...+++..+.. +.+...+..+...+...|++++|...|++..+..
T Consensus 95 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8 99999999998874 4457888899999999999999999999987654
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.09 E-value=0.00011 Score=58.35 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCC--Cc----h
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PN----T 398 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~----~ 398 (572)
..+..+...+.+.|++++|+..|++..++ -+.+...|..+..+|.+.|++++|++.+++..+.... ++ .
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 45667788888999999999999988874 2345678888888999999999999998887754211 11 1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008265 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (572)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 438 (572)
.+|..+..++...|++++|.+.|++..+. .||..+...
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 35666777888889999999999888764 566555443
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.07 E-value=0.00019 Score=55.61 Aligned_cols=98 Identities=18% Similarity=0.067 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++..+.... +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 455667777888888888888888888763 1346677788888888888888888888888776322 4667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 404 LINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
+..++...|++++|.+.+++..+.
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc
Confidence 888888888888888888888765
No 145
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.07 E-value=8.4e-05 Score=58.98 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCC--Cc----
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PN---- 397 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~---- 397 (572)
...+..+...+...|++++|...|.+.... .+.+...+..+...|...|++++|...+++..+.... ++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 345667778888889999999999888764 2446677888888888899999999888887765221 11
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (572)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 442 (572)
..+|..+..++...|++++|.+.|++..+. .|+......+...
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 567778888888999999999999888876 3566555554444
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.06 E-value=2.6e-05 Score=64.01 Aligned_cols=99 Identities=8% Similarity=-0.075 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
+...+..+...+.+.|++++|...|+..... -+.+...|..+..+|...|++++|+..|++....... +...|.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~ 93 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPF 93 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHH
Confidence 3445667778888999999999999998874 2446778888889999999999999999998876422 557788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+..+|...|++++|...|+...+.
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999999999988764
No 147
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.04 E-value=0.0021 Score=60.24 Aligned_cols=230 Identities=11% Similarity=-0.000 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHH---H
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSL---M 298 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~l---l 298 (572)
.++.+-....+.+..++|+++++.+...... +..+|+.--..+...| .+++++++++.+..... -+...|+-- +
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 4444444555556667899999988876433 4567777777777778 59999999999887642 233344332 3
Q ss_pred HHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 299 NVNAH-DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV--------LAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (572)
Q Consensus 299 ~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~l 369 (572)
....+ ++++++++++.+.+...+ |...|+--.-.+.+.|.++ ++.+.++++.+. -+-|...|+..
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-----dp~N~SAW~~R 207 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-----DGRNNSAWGWR 207 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence 33335 788899999998876544 7777776665666656555 888888888764 24577788888
Q ss_pred HHHHHcccc-------HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCH--------------------HHHHHHHH
Q 008265 370 VKVFADAKW-------WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV--------------------EQAMHLFE 422 (572)
Q Consensus 370 i~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~ 422 (572)
...+.+.++ ++++++.++++...... |...|+.+-..+.+.|+. .+..+...
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF 286 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH
Confidence 888877775 78899999888876443 777888777777776653 22333333
Q ss_pred HHHHcC-----CCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 423 EMLQAG-----CEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 423 ~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
++...+ -.+....+..+.+.|...|+.++|.++++.+.+
T Consensus 287 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 332221 135778888999999999999999999999863
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=0.00022 Score=58.01 Aligned_cols=99 Identities=9% Similarity=-0.015 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc
Q 008265 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 397 (572)
.+...+..+...+...|++++|...|++..+ ..|+ ...|..+..+|...|++++|+..+++..+... .+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~ 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG------LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GD 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cC
Confidence 3566777788888888999999999988876 4565 56778888888888999999988888877632 25
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 398 TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
...|..+..+|...|++++|...|++..+.
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 667778888888889999999888888775
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.99 E-value=0.0001 Score=63.93 Aligned_cols=50 Identities=14% Similarity=-0.073 Sum_probs=22.9
Q ss_pred HHhcCCChHHHHHhhhcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 200 LCVNKPDVNLAIRYACIVPRA----DILFCNFVREFGKKRDLVSALRAYDASKK 249 (572)
Q Consensus 200 ~~~~~g~~~~a~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 249 (572)
.....|.++.+.+.++..... ...+..+...+.+.|++++|...|+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333445555555555433211 13455566666666777777776666655
No 150
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.99 E-value=6.7e-05 Score=57.63 Aligned_cols=99 Identities=14% Similarity=-0.016 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP--NSQCCNILL 440 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li 440 (572)
...+..+...+...|++++|...+++..+... .+...|..+...+...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 34555666667777777777777777665532 245566667777777777777777777776653 22 466677777
Q ss_pred HHHHHh-CCHhHHHHHHHHhhhcc
Q 008265 441 QACVEA-CQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 441 ~~~~~~-g~~~~A~~~~~~m~~~~ 463 (572)
.++.+. |++++|.+.+++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777766543
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00013 Score=57.85 Aligned_cols=99 Identities=11% Similarity=0.045 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 442 (572)
...|..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 456777888899999999999999999887432 67889999999999999999999999999874 4467889999999
Q ss_pred HHHhCCHhHHHHHHHHhhhcc
Q 008265 443 CVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+...|++++|.+.|++..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999999887654
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.99 E-value=0.00042 Score=55.53 Aligned_cols=100 Identities=10% Similarity=-0.030 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhH
Q 008265 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 401 (572)
.+...+..+...+...|++++|...|...... .+.+...|..+..++...|++++|+..+++..+.... +...|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 80 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAH 80 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHH
Confidence 35677778888888888888888888888764 2345677888888888888888888888888776432 56678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 402 SSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
..+..+|...|++++|...|++..+.
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888888888887653
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.98 E-value=0.00028 Score=58.87 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
+...+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..|++..+.... +...|.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 83 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWS 83 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 4556777888899999999999999999874 2346778899999999999999999999998887432 567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+..+|...|++++|...|++..+.
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 8999999999999999999998875
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.98 E-value=0.00015 Score=62.82 Aligned_cols=136 Identities=12% Similarity=-0.058 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-----------VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
...+..+...+.+.|++++|...|++............. ...|..+..+|.+.|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345667778888999999999999998874211100001 267888889999999999999999998876
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHH-HHHHHhhh
Q 008265 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF-RLFRSWTL 461 (572)
Q Consensus 393 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 461 (572)
.. .+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...++.+++. ..+..|..
T Consensus 118 ~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 DK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred Cc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 32 356788889999999999999999999998763 346677888888888877777666 55555543
No 155
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.96 E-value=0.0039 Score=58.36 Aligned_cols=198 Identities=10% Similarity=0.006 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 222 ILFCNFVREFGKKR-DLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-G-DYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 222 ~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
.+|+.--..+...| .+++++++++.+.....+ +..+|+.--..+.+. + ++++++++++.+.+.. +-|-..|+---
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~ 166 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLH 166 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 33444333344445 477777777777665432 455666655555555 5 6677777777776553 12333333221
Q ss_pred H--HhcCCh--------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHhCCCCC
Q 008265 299 N--VNAHDL--------KFTLEVYKNMQKLGVMADMASYNILLKACCLAGN-------TVLAQEIYGEVKHLEAKGVLKL 361 (572)
Q Consensus 299 ~--~~~~~~--------~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~ 361 (572)
. ...+.+ .++++.++++.+..+. |...|+.....+.+.++ ++++.+.++++... .+-
T Consensus 167 wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-----~P~ 240 (349)
T 3q7a_A 167 WLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-----IPH 240 (349)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-----CCC
Confidence 1 111222 3677777777776544 67777776666666665 56677777766653 244
Q ss_pred CHHHHHHHHHHHHccccH--------------------HHHHHHHHHHHHCC-----CCCchhhHHHHHHHHHHcCCHHH
Q 008265 362 DVFTYSTIVKVFADAKWW--------------------QMALKVKEDMLSAG-----VTPNTITWSSLINACANAGLVEQ 416 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~ 416 (572)
|...|+-+-..+.+.|+. ....+...++...+ -.++...+..++..|...|+.++
T Consensus 241 n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 320 (349)
T 3q7a_A 241 NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDD 320 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHH
Confidence 566676655555544432 22333333332221 12466778888888888888889
Q ss_pred HHHHHHHHHHc
Q 008265 417 AMHLFEEMLQA 427 (572)
Q Consensus 417 a~~~~~~m~~~ 427 (572)
|.++++.+.+.
T Consensus 321 a~~~~~~l~~~ 331 (349)
T 3q7a_A 321 AAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99998888643
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.96 E-value=0.00021 Score=57.43 Aligned_cols=102 Identities=10% Similarity=-0.018 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008265 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (572)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (572)
+.+...|..+...+...|++++|+..|.+..+.... +...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 456788999999999999999999999998877432 56789999999999999999999999998874 4467889999
Q ss_pred HHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 440 LQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
..++...|++++|...|++..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999999987654
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.96 E-value=0.00012 Score=59.40 Aligned_cols=93 Identities=14% Similarity=-0.042 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHH
Q 008265 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407 (572)
Q Consensus 328 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 407 (572)
..+...+.+.|++++|...|+..... -+.+...|..+..+|.+.|++++|+..|++....... +...|..+..+
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCML-----DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 33444444555555555555555442 1223444444455555555555555555554443211 23344444445
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 008265 408 CANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 408 ~~~~g~~~~a~~~~~~m~~ 426 (572)
|...|++++|...|+...+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554443
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.95 E-value=0.0004 Score=54.86 Aligned_cols=99 Identities=10% Similarity=0.014 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
+...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 456788888999999999999999999887632 266788899999999999999999999998864 446788899999
Q ss_pred HHHHhCCHhHHHHHHHHhhhc
Q 008265 442 ACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.+.+.|++++|...|++..+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999987653
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.95 E-value=0.00014 Score=67.05 Aligned_cols=92 Identities=11% Similarity=-0.113 Sum_probs=69.0
Q ss_pred hHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 008265 193 EEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (572)
Q Consensus 193 ~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (572)
.+..+...+...|++++|+..++.. |.+...+..+...|.+.|++++|...++...+... .+...+..+..+|..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3444555555566666665555442 44557788889999999999999999999887532 357788888999999
Q ss_pred cCCHHHHHHHHHHHHhC
Q 008265 269 CGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 269 ~g~~~~a~~~~~~m~~~ 285 (572)
.|++++|...|++..+.
T Consensus 85 ~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSL 101 (281)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999887754
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.94 E-value=0.00047 Score=53.25 Aligned_cols=99 Identities=13% Similarity=-0.021 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
....+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 345677888899999999999999999987632 267788889999999999999999999998864 446788899999
Q ss_pred HHHHhCCHhHHHHHHHHhhhc
Q 008265 442 ACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~ 462 (572)
++.+.|++++|.+.+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999987653
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00062 Score=67.12 Aligned_cols=214 Identities=6% Similarity=-0.085 Sum_probs=127.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 008265 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALR 242 (572)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 242 (572)
..+.+.|++++|++.|..+.+......+.... .+....... .....+..+...|.+.|++++|.+
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~------~~~~al~~l~~~y~~~~~~~~a~~ 76 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG---------ASVDDKRRN------EQETSILELGQLYVTMGAKDKLRE 76 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS---------SSBCSHHHH------HHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHH---------HHHHHHHhh------hHHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556899999999999988764332221110 000000000 001345667777788888888887
Q ss_pred HHHHHHhc-CCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHh--cCChHHHHH
Q 008265 243 AYDASKKH-LSSPNM----YICRTIIDVCGICGDYMKSRAIYEDLRS----QNVTLN-IYVFNSLMNVN--AHDLKFTLE 310 (572)
Q Consensus 243 ~~~~m~~~-~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~--~~~~~~a~~ 310 (572)
.+..+.+. +..++. .+.+.+-..+...|++++|..+++.... .+..+. ..++..+...+ .|++++|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 77 FIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp HHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence 77765442 111222 1223333334455777888777776643 222232 23344444443 377888888
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccccHHHHH
Q 008265 311 VYKNMQKL----GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMAL 383 (572)
Q Consensus 311 ~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~ 383 (572)
+++++... +-++ ....+..++..|...|++++|..+++........-..++. ...+..+...+...|++++|.
T Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 157 LINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 77776542 1111 2456788889999999999999999988765433211222 245667777788899999998
Q ss_pred HHHHHHHH
Q 008265 384 KVKEDMLS 391 (572)
Q Consensus 384 ~~~~~m~~ 391 (572)
..|.+..+
T Consensus 237 ~~~~~a~~ 244 (434)
T 4b4t_Q 237 SYFFESFE 244 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877653
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.93 E-value=0.00021 Score=58.03 Aligned_cols=99 Identities=14% Similarity=-0.000 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 442 (572)
...+..+...+.+.|++++|+..|++....... +...|..+..+|.+.|++++|...|++..+.. +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 335566667778888888888888888776332 56677778888888888888888888887764 3456677778888
Q ss_pred HHHhCCHhHHHHHHHHhhhcc
Q 008265 443 CVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+...|++++|.+.|++..+..
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888877654
No 163
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.92 E-value=0.00049 Score=54.62 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKA 333 (572)
Q Consensus 256 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 333 (572)
...|..+...+.+.|++++|...|++..+.. +.+...+..+..++. +++++|+..+++..+... .+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence 3444455555555555555555555554431 011222222222111 333333333333333221 134445555555
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 008265 334 CCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 334 ~~~~g~~~~a~~~~~~~~~ 352 (572)
+.+.|++++|...|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5566666666666655554
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.92 E-value=0.00015 Score=55.68 Aligned_cols=98 Identities=9% Similarity=0.014 Sum_probs=68.2
Q ss_pred CcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CcHHHHHHH
Q 008265 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTI 262 (572)
Q Consensus 188 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~l 262 (572)
|.+...+..+...+...|++++|...++.. +.+...+..+...+...|++++|...|+...+.... .+...+..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 444455666666677777777776666542 444566777777888888888888888877765321 146677777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC
Q 008265 263 IDVCGIC-GDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 263 l~~~~~~-g~~~~a~~~~~~m~~~ 285 (572)
...+.+. |++++|.+.|+...+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7888888 8888888888887765
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.0012 Score=65.11 Aligned_cols=199 Identities=11% Similarity=-0.104 Sum_probs=138.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCc----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPN----------------MYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLN 290 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 290 (572)
...+.+.|++++|.+.|..+.+...... ...+..+...|.+.|++++|.+.+..+... +-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456778999999999998876532211 134778899999999999999999887643 11122
Q ss_pred HH---HHHHHHHHh---cCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCC
Q 008265 291 IY---VFNSLMNVN---AHDLKFTLEVYKNMQK----LGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359 (572)
Q Consensus 291 ~~---~~~~ll~~~---~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 359 (572)
.. .....+... .++.+.+..++..... .+..+. ..++..+...|...|++++|..++.++........-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 222223322 2678999888887653 333333 456778899999999999999999988764322111
Q ss_pred CC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHC----CCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 360 KL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 360 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
.+ ....+..++..|...|++++|..++++.... +..+. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2447888999999999999999999887643 11111 24566667777888999999988887754
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.91 E-value=0.00013 Score=60.30 Aligned_cols=137 Identities=15% Similarity=0.026 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC----CCCC-ch
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVTP-NT 398 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~ 398 (572)
.++..+...+...|++++|...+.+..+..... ....-..++..+...+...|++++|.+.+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 457778888999999999999999988754321 10111247788888999999999999999987653 1111 13
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 399 ITWSSLINACANAGLVEQAMHLFEEMLQA----GCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
..+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46778888999999999999999988642 2111 135677888889999999999999988764
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.91 E-value=0.00017 Score=60.18 Aligned_cols=101 Identities=16% Similarity=0.049 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008265 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (572)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 440 (572)
.+...+..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|...|++..+.. +-+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35667888889999999999999999999887432 67889999999999999999999999999874 44688899999
Q ss_pred HHHHHhCCHhHHHHHHHHhhhcc
Q 008265 441 QACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.++.+.|++++|.+.|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999987654
No 168
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.88 E-value=0.00052 Score=65.07 Aligned_cols=86 Identities=12% Similarity=-0.129 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 405 (572)
.+..+..+|.+.|++++|+..|++..+. -+.+...|..+..+|...|++++|+..|++..+.... +...+..+.
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~ 271 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL-----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLA 271 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 3444455555555555555555555542 1223445555555555555555555555555544221 334445555
Q ss_pred HHHHHcCCHHHH
Q 008265 406 NACANAGLVEQA 417 (572)
Q Consensus 406 ~~~~~~g~~~~a 417 (572)
.++.+.|+.+++
T Consensus 272 ~~~~~~~~~~~a 283 (336)
T 1p5q_A 272 VCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=0.00046 Score=56.08 Aligned_cols=101 Identities=9% Similarity=-0.052 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008265 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN----TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435 (572)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 435 (572)
+.+...+..+...+...|++++|.+.|++..+. .|+ ...|..+..+|...|++++|...+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 346778888999999999999999999999886 455 6788889999999999999999999998763 446788
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 436 CNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+..+..++...|++++|...|++..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8899999999999999999999887653
No 170
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.83 E-value=0.00033 Score=55.53 Aligned_cols=98 Identities=8% Similarity=0.062 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CEPN----SQCC 436 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~ 436 (572)
...+..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.+++..+.. ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 346778889999999999999999999886432 56788999999999999999999999987632 1222 2467
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 437 NILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
..+..++...|++++|.+.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7788889999999999999988654
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.82 E-value=0.00023 Score=55.90 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=50.1
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 008265 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 447 (572)
.+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|...|++..+.. +-+...+..+..++.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3444555556666666666655554211 44455555555566666666666666655542 224455555555566666
Q ss_pred CHhHHHHHHHHhhh
Q 008265 448 QFDRAFRLFRSWTL 461 (572)
Q Consensus 448 ~~~~A~~~~~~m~~ 461 (572)
++++|...|++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655543
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.81 E-value=0.00044 Score=54.67 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPN----SQCC 436 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~ 436 (572)
...+..+...+...|++++|...|.+..+... .+...+..+...+...|++++|...+++..+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 35677888899999999999999999987642 3667888899999999999999999999886531 222 6788
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 437 NILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
..+..++.+.|++++|.+.|++..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8899999999999999999998765
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.79 E-value=0.00027 Score=55.49 Aligned_cols=95 Identities=9% Similarity=-0.085 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHH
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (572)
+..+...+.+.|++++|...|+...+. -+.+...|..+..++...|++++|+..|++..+.... +...+..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~ 93 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK-----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 344556777888888888888888763 1346677888888888888888888888888776332 4567777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 008265 407 ACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~ 427 (572)
++...|++++|...+++..+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888887754
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.78 E-value=0.0006 Score=53.91 Aligned_cols=92 Identities=13% Similarity=0.018 Sum_probs=70.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc---hhhH
Q 008265 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-V---FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN---TITW 401 (572)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~ 401 (572)
.+...+...|++++|...|+.+.+. .|+ . ..+..+..++.+.|++++|...|++..+.... + ...+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~ 79 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGL 79 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHH
Confidence 3456677889999999999988763 232 2 46777788888899999999999988876322 2 4557
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 402 SSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
..+..++...|++++|...|+++.+.
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888888899999999999988876
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.75 E-value=0.00047 Score=56.86 Aligned_cols=149 Identities=7% Similarity=-0.075 Sum_probs=92.9
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCC-Ccc
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA-PLE 148 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~ 148 (572)
....+..+...+...|++++|+..+++..+...... .......++..+...+...|++++|+..+++..+..-. ++.
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 356788888999999999999999999886532211 11112445667778889999999999999887764211 111
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHH
Q 008265 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (572)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li 228 (572)
.. ....+......+...|++++|...+++..+..... ++.. .....+..+.
T Consensus 86 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------~~~~----------~~~~~~~~la 136 (164)
T 3ro3_A 86 AV---EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----------------KDRI----------GEGRACWSLG 136 (164)
T ss_dssp HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHH----------HHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----------------cchH----------hHHHHHHHHH
Confidence 11 11222222233345788888888877654321000 0000 0014566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 008265 229 REFGKKRDLVSALRAYDASKK 249 (572)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~m~~ 249 (572)
..+...|++++|.+.+++..+
T Consensus 137 ~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 137 NAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 888888888888888877654
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.73 E-value=0.00032 Score=69.73 Aligned_cols=132 Identities=13% Similarity=0.082 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHccccHHHHHHHHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---------------VFTYSTIVKVFADAKWWQMALKVKE 387 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~ 387 (572)
....+..+...|.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-----EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-----cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34567788889999999999999999998753 122 5788999999999999999999999
Q ss_pred HHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHH-HHHHHhhh
Q 008265 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF-RLFRSWTL 461 (572)
Q Consensus 388 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 461 (572)
+..+.... +...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++. .++..|..
T Consensus 342 ~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 342 KALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99887433 67788999999999999999999999998763 335567888888888999888776 45565543
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.70 E-value=0.00015 Score=72.34 Aligned_cols=120 Identities=12% Similarity=0.087 Sum_probs=87.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 411 (572)
..+.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|++.+++..+.... +...|..+..+|.+.
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 87 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3456788999999999988874 1345778888889999999999999999998887432 567788888899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHhCCHhHHHHHHHH
Q 008265 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQA--CVEACQFDRAFRLFRS 458 (572)
Q Consensus 412 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~ 458 (572)
|++++|.+.|++..+.. +-+...+..+..+ +.+.|++++|.+.+++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999988753 2233344444444 7888999999998873
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.68 E-value=0.00083 Score=64.50 Aligned_cols=129 Identities=12% Similarity=0.006 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-----------VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (572)
..+..+...+.+.|++++|+..|++..+..... .-+.+..+|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346677788889999999999998887621110 012345688889999999999999999999999864
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHH
Q 008265 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (572)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 455 (572)
.. +...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++.+.
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 56788889999999999999999999998863 33667777777777777777766543
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.67 E-value=0.00076 Score=53.31 Aligned_cols=94 Identities=10% Similarity=-0.081 Sum_probs=78.0
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCCCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN---SQCCNIL 439 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l 439 (572)
..+...+...|++++|...|+.+.+.. |+. ..+..+..++.+.|++++|...|++..+.. +.+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 345667888999999999999998863 333 477788899999999999999999998863 223 5678888
Q ss_pred HHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 440 LQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
..++.+.|++++|...|+++.+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 899999999999999999987653
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.66 E-value=0.0001 Score=57.56 Aligned_cols=83 Identities=8% Similarity=0.041 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHHHHHCCC--CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 008265 377 KWWQMALKVKEDMLSAGV--TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (572)
|++++|+..|++..+.+. +-+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444444320 1122334444445555555555555555554432 2234444445555555555555555
Q ss_pred HHHHhh
Q 008265 455 LFRSWT 460 (572)
Q Consensus 455 ~~~~m~ 460 (572)
.|++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.66 E-value=0.0013 Score=54.63 Aligned_cols=103 Identities=10% Similarity=0.026 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh----CC---------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAK----GV---------LKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
...+......+.+.|++++|...|......... .. -+.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345667778888999999999999988774110 00 01234578888888999999999999999888
Q ss_pred HCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 391 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
+... .+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 7642 25677888888999999999999999988876
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.61 E-value=0.00074 Score=67.07 Aligned_cols=136 Identities=13% Similarity=-0.003 Sum_probs=86.8
Q ss_pred hHhhhhhCChhHHHHHHHHhhhcC---CCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCC---CCCcccch
Q 008265 120 IVKSIREGRIDCVVGVLKKLNELG---VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR---LPVKELDE 193 (572)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~ 193 (572)
+..+...|++++|+.++++..+.. +.|+.. .+..++-.....+...|++++|+.++++.+... ..++.
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp---~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H--- 389 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNL---YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN--- 389 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC---
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC---
Confidence 445678899999999998876651 223322 233333333334455789999988888765421 01111
Q ss_pred HHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-Cc-HHHHHHHHHHH
Q 008265 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK-----HLSS-PN-MYICRTIIDVC 266 (572)
Q Consensus 194 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~-~~-~~~~~~ll~~~ 266 (572)
|....+++.|...|...|++++|+.++++..+ .|.. |+ ..+.+.+-.++
T Consensus 390 ------------------------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 445 (490)
T 3n71_A 390 ------------------------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTE 445 (490)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 11126778888888888888888888876532 2322 22 34556777778
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 008265 267 GICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 267 ~~~g~~~~a~~~~~~m~~~ 285 (572)
...|.+++|..+|..+++.
T Consensus 446 ~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 446 MELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888899999999888753
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.60 E-value=0.0026 Score=51.78 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCC--CCCC-----HHHHHHHHHHHHccccHHHHHHHHHHHHHC-----
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV--LKLD-----VFTYSTIVKVFADAKWWQMALKVKEDMLSA----- 392 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 392 (572)
..+......+.+.|++++|+..|++..+...... -..+ ...|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4456667778889999999999999988531100 0002 237888888888888888888888888764
Q ss_pred CCCC-chhhH----HHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 008265 393 GVTP-NTITW----SSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCCNIL 439 (572)
Q Consensus 393 g~~p-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 439 (572)
.+.| +...| .....++...|++++|+..|++..+ .|+.+........
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 1134 34566 7778888888888888888888764 3455554444333
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.58 E-value=0.00062 Score=67.63 Aligned_cols=130 Identities=12% Similarity=0.032 Sum_probs=97.8
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHh--CCCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHC-----CC-CCch-hhHH
Q 008265 333 ACCLAGNTVLAQEIYGEVKHLEAK--GVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSA-----GV-TPNT-ITWS 402 (572)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~-~~~~ 402 (572)
.+...|++++|+.++++..+.... |.-.|+ ..+++.|...|...|++++|+.++++..+. |. .|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455789999999999988875432 211233 347899999999999999999999887543 22 3333 5789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-----cCC-CCC-HHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQ-----AGC-EPN-SQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.|...|...|++++|+.++++..+ .|- .|+ ..+.+.+-.++...+.+++|..+|+++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764 231 222 345667777888999999999999998764
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.57 E-value=0.00025 Score=55.31 Aligned_cols=89 Identities=15% Similarity=-0.000 Sum_probs=62.7
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHH
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 415 (572)
..|++++|+..|++..+.. ..-+.+...+..+..+|...|++++|+..|++..+.... +...+..+..++...|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~--~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG--LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcC--CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHH
Confidence 3577888888888887620 000223457788888888888999999888888876433 4667778888888889999
Q ss_pred HHHHHHHHHHHc
Q 008265 416 QAMHLFEEMLQA 427 (572)
Q Consensus 416 ~a~~~~~~m~~~ 427 (572)
+|...+++..+.
T Consensus 79 ~A~~~~~~al~~ 90 (117)
T 3k9i_A 79 QGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999888888765
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.43 E-value=0.078 Score=49.29 Aligned_cols=180 Identities=7% Similarity=0.012 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHhcCC-hHHHHHH
Q 008265 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNS--LMNVNAHD-LKFTLEV 311 (572)
Q Consensus 237 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~-~~~a~~~ 311 (572)
+++++.+++.+....++ +..+|+.-...+.+.| .+++++++++.+.+.. +-|-..|+- .+-...+. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 56777777777765433 5667777666667777 4788888888887753 223334332 22233355 5788888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-
Q 008265 312 YKNMQKLGVMADMASYNILLKACCLA--------------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA- 376 (572)
Q Consensus 312 ~~~m~~~~~~~~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 376 (572)
++.+.+..+. |...|+.....+.+. +.++++.+.+...... -+-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-----~P~d~SaW~Y~r~ll~~~~ 241 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAWFYHRWLLGAGS 241 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcc
Confidence 8888776654 677777666555554 3467777777777764 244666776554444443
Q ss_pred ----------ccHHHHHHHHHHHHHCCCCCchhhHHHHHHH-----HHHcCCHHHHHHHHHHHHHc
Q 008265 377 ----------KWWQMALKVKEDMLSAGVTPNTITWSSLINA-----CANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 377 ----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~ 427 (572)
+.++++++.++++.+. .||. .|..+-.+ ....|..+++...+.++.+.
T Consensus 242 ~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 242 GRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4567777777777765 4543 33322111 11235555666666666654
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.42 E-value=0.00033 Score=66.50 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=48.9
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQA- 442 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~- 442 (572)
.|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|...|++..+. .|+ ...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 677788888888888888888888877632 25677888888888888888888888887654 343 3344444433
Q ss_pred HHHhCCHhHHHHHHHHhhhc
Q 008265 443 CVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~ 462 (572)
....+..+.+..+|.+|...
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 23345667777777777644
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.41 E-value=0.0016 Score=54.00 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHC--------CC---------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSA--------GV---------TPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
...+......+.+.|++++|+..|.+..+. .. .-+...|..+..+|.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 446777788899999999999999988764 00 1133678889999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 426 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
+.. +.+...|..+..+|...|++++|...|++..+..+
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 874 45688899999999999999999999999876543
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.39 E-value=0.00067 Score=67.72 Aligned_cols=113 Identities=13% Similarity=-0.016 Sum_probs=81.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
|++++|...|++..+.... +...+..+..+|.+.|++++|+..+++..+. -+.+...|..+..+|.+.|++++|
T Consensus 20 g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5677777777777665332 5778888888999999999999999988873 134567888888899999999999
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHH--HHHcCCHHHHHHHHH
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINA--CANAGLVEQAMHLFE 422 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 422 (572)
++.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999988776322 33455555555 777888899988887
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.33 E-value=0.0032 Score=51.25 Aligned_cols=99 Identities=11% Similarity=-0.015 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc-------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-------------TITWSSLINACANAGLVEQAMHLFEEMLQA-- 427 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 427 (572)
...+......+.+.|++++|+..|++..+. .|+ ...|+.+..++.+.|++++|+..+++..+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 345566677888999999999999999876 333 228999999999999999999999999875
Q ss_pred ---CCCCC-HHHH----HHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 428 ---GCEPN-SQCC----NILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 428 ---~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+.|+ ...| .....++...|++++|+..|++..+..
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 22454 4677 888899999999999999999987643
No 191
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.32 E-value=0.1 Score=48.45 Aligned_cols=222 Identities=8% Similarity=0.007 Sum_probs=149.7
Q ss_pred HhcCCH-HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHH--H
Q 008265 232 GKKRDL-VSALRAYDASKKHLSSPNMYICRTIIDVCGICGD----------YMKSRAIYEDLRSQNVTLNIYVFNSL--M 298 (572)
Q Consensus 232 ~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~l--l 298 (572)
.+.|.+ ++|+++++.+....+. +...|+.--..+...|. +++++.+++.+..... -+...|+-- +
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 345554 4788888888875432 34455543333333332 6889999999887632 234444432 2
Q ss_pred HHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 008265 299 NVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN-TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (572)
Q Consensus 299 ~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 375 (572)
-...+ .+++++.+++.+.+...+ |...|+.-.-.+...|. ++++.+.++.+.+. -+-|...|+.....+.+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-----~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-----NFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHH
Confidence 22234 589999999999987755 88888887778888888 58999999998874 25577788777666655
Q ss_pred c--------------ccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCC
Q 008265 376 A--------------KWWQMALKVKEDMLSAGVTPNTITWSSLINACANA-----------GLVEQAMHLFEEMLQAGCE 430 (572)
Q Consensus 376 ~--------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~ 430 (572)
. +.++++++.+......... |...|+.+-..+.+. +.++++++.++++.+. .
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~ 268 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--E 268 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--C
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--C
Confidence 4 5689999999998877443 677787665555554 4578999999999886 4
Q ss_pred CCH-HHHHHHHH---HHHHhCCHhHHHHHHHHhhhccc
Q 008265 431 PNS-QCCNILLQ---ACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 431 p~~-~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
||. ..+..++. +....|..+++...+.++.+-++
T Consensus 269 pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 269 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 543 33322222 22235677888888988876543
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00048 Score=52.75 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-------SQC 435 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~~ 435 (572)
...+..+...+.+.|++++|++.|++..+... .+...|..+..++.+.|++++|.+.+++..+. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 44556666666677777777777776665522 24556666677777777777777777777654 333 334
Q ss_pred HHHHHHHHHHhCCHhHHHHHH
Q 008265 436 CNILLQACVEACQFDRAFRLF 456 (572)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~ 456 (572)
+..+..++...|+.+.|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 444555555555555544443
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.15 E-value=0.0079 Score=59.60 Aligned_cols=145 Identities=14% Similarity=-0.003 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (572)
Q Consensus 256 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 335 (572)
...|..+-..|.+.|++++|...|++..+.. |+...+ ..+... ++.. .....|..+..+|.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~---------~~~~~~----~~~~----~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL---------SEKESK----ASES----FLLAAFLNLAMCYL 328 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC---------CHHHHH----HHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC---------ChHHHH----HHHH----HHHHHHHHHHHHHH
Confidence 3455566666667777777777776665431 110000 000000 0100 02355667777788
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHH
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 415 (572)
+.|++++|+..++++.++. +.+...|..+..+|...|++++|+..|++..+.... +...+..+..++.+.++.+
T Consensus 329 ~~g~~~~A~~~~~~al~~~-----p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLD-----SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887641 345667777888888888888888888888776322 4466777777777777777
Q ss_pred HHHH-HHHHHH
Q 008265 416 QAMH-LFEEML 425 (572)
Q Consensus 416 ~a~~-~~~~m~ 425 (572)
++.. ++..|.
T Consensus 403 ~a~~~~~~~~f 413 (457)
T 1kt0_A 403 ERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 6653 444443
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.12 E-value=0.0017 Score=61.56 Aligned_cols=115 Identities=15% Similarity=-0.026 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
....+..+...+.+.|++++|...|.+... ..|+... +...++.+++...+. ...|.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~------~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~ 234 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIA------YMGDDFM-------FQLYGKYQDMALAVK----------NPCHL 234 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHH------HSCHHHH-------HTCCHHHHHHHHHHH----------THHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------Hhccchh-------hhhcccHHHHHHHHH----------HHHHH
Confidence 466778888888899999999999999886 3555432 334455555543331 23688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 235 nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 235 NIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999999999998864 44788999999999999999999999998765
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.04 E-value=0.0092 Score=43.28 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (572)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 443 (572)
..+..+...+...|++++|+..+++..+... .+...+..+..++.+.|++++|...+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3444555555555566666655555554421 134445555555666666666666666655542 22344444444443
Q ss_pred H
Q 008265 444 V 444 (572)
Q Consensus 444 ~ 444 (572)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.99 E-value=0.012 Score=56.26 Aligned_cols=90 Identities=7% Similarity=-0.092 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...|..+..+|.+.|++++|+..+++..+. -+.+...|..+..+|...|++++|++.|++..+.... +...+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~ 346 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEI-----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 445666666777777777777777777652 1234556666777777777777777777776666322 4455566
Q ss_pred HHHHHHHcCCHHHHHH
Q 008265 404 LINACANAGLVEQAMH 419 (572)
Q Consensus 404 li~~~~~~g~~~~a~~ 419 (572)
+..++...++.+++.+
T Consensus 347 l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655543
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.95 E-value=0.03 Score=44.71 Aligned_cols=110 Identities=15% Similarity=-0.009 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cccH
Q 008265 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWW 379 (572)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 379 (572)
+.++|+..|.+..+.| .++.. +-..|...+..++|.+.|++..+. -+...+..|-..|.. .+++
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHcCCCCCccH
Confidence 3444555555554444 11222 333444444455555555555431 234444444444444 4555
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 008265 380 QMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 428 (572)
++|++.|++..+.| +...+..|-..|.. .++.++|.+.|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55555555555442 33344444444544 455555555555555444
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.94 E-value=0.0064 Score=46.78 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 008265 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (572)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (572)
++...|++..+. -+.+...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|...|
T Consensus 3 ~a~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQ-----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456667666652 1345667777777888888888888888877765322 4566777777788888888888887
Q ss_pred HHHHH
Q 008265 422 EEMLQ 426 (572)
Q Consensus 422 ~~m~~ 426 (572)
++..+
T Consensus 77 ~~al~ 81 (115)
T 2kat_A 77 ESGLA 81 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.94 E-value=0.0091 Score=45.88 Aligned_cols=80 Identities=15% Similarity=-0.060 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHH
Q 008265 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 386 (572)
.++..|++..+... .+...+..+...|...|++++|...|++..+. .+.+...|..+..+|...|++++|...|
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46677777776543 26778888888999999999999999998874 1345678888899999999999999999
Q ss_pred HHHHHC
Q 008265 387 EDMLSA 392 (572)
Q Consensus 387 ~~m~~~ 392 (572)
++..+.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988754
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0033 Score=47.86 Aligned_cols=88 Identities=14% Similarity=0.024 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc-----
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN----- 397 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----- 397 (572)
+...+..+...+...|++++|...|++..+. .+.+...|..+..++.+.|++++|++.+++..+. .|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 75 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHH
Confidence 4556777888889999999999999998874 2446778888899999999999999999998876 444
Q ss_pred --hhhHHHHHHHHHHcCCHHHH
Q 008265 398 --TITWSSLINACANAGLVEQA 417 (572)
Q Consensus 398 --~~~~~~li~~~~~~g~~~~a 417 (572)
...+..+..++...|+.+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhHhhh
Confidence 23344444444444444333
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.91 E-value=0.18 Score=51.26 Aligned_cols=173 Identities=12% Similarity=0.063 Sum_probs=124.1
Q ss_pred HcCC-hHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcccc----------HHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 336 LAGN-TVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKW----------WQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 336 ~~g~-~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
+.|+ -++|.+.++++... .| +..+|+.--..+.+.|+ ++++++.++.+.+...+ +...|+.
T Consensus 40 ~~~~~~eeal~~~~~~l~~------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~h 112 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHH 112 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 3444 45678888888873 34 34567776666666666 88999999998877544 6678888
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC-CHhHHHHHHHHhhhcccccccccccCCchHHHH
Q 008265 404 LINACANAG--LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC-QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (572)
Q Consensus 404 li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 480 (572)
-...+.+.| +++++++.++++.+.. .-+...|+.-..++.+.| .++++.+.++++.+.++
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p---------------- 175 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---------------- 175 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC----------------
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC----------------
Confidence 888888888 7799999999998875 457888888888888888 78888888888765432
Q ss_pred hhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh----------------cHHHHHHHHHHHHhCCC
Q 008265 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT----------------DYYRVKALMNEMRTVGL 544 (572)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~----------------~~~~a~~~~~~m~~~g~ 544 (572)
-|...|+-.-..+.+ ..+++.+.+..... +
T Consensus 176 --------------------------------~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~ 221 (567)
T 1dce_A 176 --------------------------------SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--T 221 (567)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--H
T ss_pred --------------------------------CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--h
Confidence 244455444333221 24788888888776 4
Q ss_pred CC-CHHHHHHHHHHHHccCCccc
Q 008265 545 SP-NHISWTILIDACGGSGNVEG 566 (572)
Q Consensus 545 ~p-~~~~~~~l~~~~~~~g~~~~ 566 (572)
.| |...|.-+-..+.+.|..++
T Consensus 222 ~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 222 DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred CCCCccHHHHHHHHHhcCCCccc
Confidence 46 56788888888888877555
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.89 E-value=0.014 Score=42.26 Aligned_cols=81 Identities=16% Similarity=0.081 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+...+...|++++|...|++..+. .+.+...+..+...+.+.|++++|+..+++..+.... +...+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~ 82 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 456777788888999999999999998874 1346678888888999999999999999998876322 4455555
Q ss_pred HHHHHHH
Q 008265 404 LINACAN 410 (572)
Q Consensus 404 li~~~~~ 410 (572)
+..++.+
T Consensus 83 l~~~~~~ 89 (91)
T 1na3_A 83 LGNAKQK 89 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.82 E-value=0.093 Score=53.29 Aligned_cols=151 Identities=9% Similarity=0.011 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008265 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN----------TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (572)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 374 (572)
.++|++.++++.+.+.. +...|+.--.++.+.|+ ++++.+.++.+.+. -+-+..+|+.-...+.
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-----~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH
Confidence 34555555555554332 33444444444444444 66677777766653 1334556666666666
Q ss_pred ccc--cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-----
Q 008265 375 DAK--WWQMALKVKEDMLSAGVTPNTITWSSLINACANAG-LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA----- 446 (572)
Q Consensus 375 ~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----- 446 (572)
+.+ +++++++.++++.+...+ +...|+.-...+.+.| ..+++.+.++++.+.. .-|...|+.....+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccc
Confidence 666 567777777777766443 5666766666666666 6777777777766553 33566666665555553
Q ss_pred ---------CCHhHHHHHHHHhhhcc
Q 008265 447 ---------CQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 447 ---------g~~~~A~~~~~~m~~~~ 463 (572)
+.++++.+.+++.....
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC
Confidence 34567777776665433
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.73 E-value=0.061 Score=42.89 Aligned_cols=111 Identities=14% Similarity=-0.032 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 008265 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEI 346 (572)
Q Consensus 271 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~ 346 (572)
++++|++.|++..+.| .++.. -..+....+..++|...|++..+.| +...+..+-..|.. .+++++|...
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4555566665555554 22222 1111111134555666666665543 45556666666666 6677777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cccHHHHHHHHHHHHHCCC
Q 008265 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGV 394 (572)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 394 (572)
|+...+ . -+...+..|...|.. .+++++|.+.|++..+.|.
T Consensus 84 ~~~Aa~---~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACG---L----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHH---T----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHc---C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 777665 1 255566666666666 6777777777777776653
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.68 E-value=0.0085 Score=48.64 Aligned_cols=98 Identities=13% Similarity=0.002 Sum_probs=60.3
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcccc----------HHHHHHHHHHHHHCCCCCchhhHHHHH
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW----------WQMALKVKEDMLSAGVTPNTITWSSLI 405 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~li 405 (572)
+.+.+++|.+.++...+. -+.+...|+.+..++...++ +++|+..|++..+.... +...|..+-
T Consensus 14 r~~~feeA~~~~~~Ai~l-----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG 87 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 445566677777666653 13355566666666665554 34777777777665322 445666677
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 406 NACANA-----------GLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 406 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
.+|... |++++|.+.|++..+. .|+...|...+.
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 777665 3788888888888775 566555544433
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.68 E-value=0.03 Score=45.42 Aligned_cols=110 Identities=10% Similarity=0.032 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008265 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT----------VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (572)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (572)
.+++|...++...+.... +...|..+..++...+++ ++|+..|++..++. +-+...|..+..+|
T Consensus 17 ~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-----P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-----PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-----cCcHHHHHHHHHHH
Confidence 356677777777665543 677777777777776654 58999999988841 33556888888888
Q ss_pred Hccc-----------cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 374 ADAK-----------WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 374 ~~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
...| ++++|++.|++..+. .|+...|...+.. .++|-+++-++...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH------HHTHHHHHHHHHHS
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH------HHhCHhccCccccc
Confidence 8764 899999999999886 6776666555443 34555555555543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.67 E-value=0.011 Score=44.08 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
+...+..+...|.+.|++++|++.|++..+.... +...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555666666666666666665554221 33455555666666666666666665554
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.54 E-value=0.015 Score=43.42 Aligned_cols=64 Identities=8% Similarity=-0.045 Sum_probs=48.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (572)
Q Consensus 220 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 284 (572)
+...+..+...|.+.|++++|...|+...+.... +...|..+..+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3466777788888888888888888888776432 455777888888888888888888887764
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.29 E-value=0.1 Score=55.90 Aligned_cols=153 Identities=13% Similarity=0.071 Sum_probs=95.1
Q ss_pred HhcCCHHHHHH-HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHH
Q 008265 232 GKKRDLVSALR-AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (572)
Q Consensus 232 ~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~ 310 (572)
...+++++|.+ ++..+ ++......++..+.+.|.+++|+++.++- ....-+....|++++|++
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~----------~~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ----------DQKFELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH----------HHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc----------chheehhhhcCCHHHHHH
Confidence 44677777766 44221 10122366666777777777777655321 111223345578888877
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
+.+.+ .+...|..+...+.+.|+++.|++.|..+.. |..+...|...|+.+...++-+...
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 75443 3678899999999999999999999987753 2234444555677777666666665
Q ss_pred HCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 391 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
..|. ++....+|.+.|++++|.+++.++.
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 5432 3444555666777777777776653
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.23 E-value=0.028 Score=54.74 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=49.2
Q ss_pred cCChHHHHHHHHHHHHHHHh--CCCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHC-----C-CCCch-hhHHHHHH
Q 008265 337 AGNTVLAQEIYGEVKHLEAK--GVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSA-----G-VTPNT-ITWSSLIN 406 (572)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~--~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~-~~~~~li~ 406 (572)
.|++++|+.++++..+.... |.-.|+ ..+++.|...|...|++++|+.++++..+- | -.|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777666654321 111122 235666666666667777666666665422 1 12222 34566666
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 008265 407 ACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~ 425 (572)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666554
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.22 E-value=0.017 Score=56.31 Aligned_cols=102 Identities=9% Similarity=0.003 Sum_probs=70.4
Q ss_pred HHHHhHhhcCChhHHHHHHHHHHhhc---CChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc---CCCCcch
Q 008265 76 DMASKLAKDGRLEEFAMIVESVVVSE---GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPLEL 149 (572)
Q Consensus 76 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~ 149 (572)
..+..+...|++++|++++++.++.. ..|+ +.....+++++...|...|++++|+.++++.... -+.|+..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~---h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDI---NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT---SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc---chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 34566778899999999999998653 2333 3335778999999999999999999999887764 1223221
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 183 (572)
.+...+.+....+...|++++|+.++++.++
T Consensus 369 ---~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 ---VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2333333333344557888888888776543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.18 E-value=0.31 Score=45.60 Aligned_cols=47 Identities=6% Similarity=-0.080 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHH
Q 008265 153 SGFKLLKNECQRLLD--SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (572)
Q Consensus 153 ~~~~~l~~~~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 201 (572)
..|..++.+...+.+ .....+|+.+|++..+. .|.....|..+.-+|
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVD 243 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 377777776554432 45678999999998875 455555555443333
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.16 E-value=0.2 Score=46.97 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhH
Q 008265 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 401 (572)
.+..++..+...+...|++++|...++++.. +.|+...|..+...+.-.|++++|.+.+.+.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~------Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGID------LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 3455555555555555666666666666665 2355555656666666666666666666665554 3444443
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.14 E-value=0.012 Score=57.35 Aligned_cols=95 Identities=8% Similarity=-0.094 Sum_probs=64.8
Q ss_pred hcCChhHHHHHHHHHHhhc---CChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc---CCCCcchhhhhhhH
Q 008265 83 KDGRLEEFAMIVESVVVSE---GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPLELFDGSGFK 156 (572)
Q Consensus 83 ~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~~~~ 156 (572)
..|++++|+.++++.++.. ..|+ +.....+++++...|...|++++|+.++++.... -+-|+.. .+..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~---Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp---~~a~ 383 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDS---NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL---NVAS 383 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTT---SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH---HHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChh---chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh---HHHH
Confidence 4578999999999987643 2333 3335778999999999999999999999888764 1222211 1333
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 008265 157 LLKNECQRLLDSGEVEMFVGLMEVLEE 183 (572)
Q Consensus 157 ~l~~~~~~~~~~g~~~~a~~~~~~~~~ 183 (572)
.+.+....+...|++++|+.++++.++
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 333333344557888888888876554
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.08 E-value=0.057 Score=52.65 Aligned_cols=101 Identities=8% Similarity=0.012 Sum_probs=64.9
Q ss_pred hhhHhhhhhCChhHHHHHHHHhhhc---CCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCC---CCCccc
Q 008265 118 SGIVKSIREGRIDCVVGVLKKLNEL---GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR---LPVKEL 191 (572)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ 191 (572)
..+..+.+.|++++|+.++++..+. -+.|+......+++.+.. .+...|++++|+.++++.+... ..+..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~---~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H- 367 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMD---ACINLGLLEEALFYGTRTMEPYRIFFPGSH- 367 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHH---HHHHHTCHHHHHHHHHHHHHHHHHHSCSSC-
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHH---HHHhhccHHHHHHHHHHHHHhHHHHcCCCC-
Confidence 3455677889999999999988765 233443322233444443 4455799999999988765421 11111
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASK 248 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 248 (572)
|....+++.|...|...|++++|+.++++..
T Consensus 368 --------------------------p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 368 --------------------------PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1112677788888888888888888887653
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.91 E-value=0.026 Score=41.68 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=29.1
Q ss_pred HHHccccHHHHHHHHHHHHHCCCCCchh-hHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 372 VFADAKWWQMALKVKEDMLSAGVTPNTI-TWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+.+.|++++|++.+++..+.... +.. .|..+..+|...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444555555555555555544211 233 4555555555566666666666655554
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.80 E-value=0.55 Score=50.10 Aligned_cols=76 Identities=9% Similarity=-0.073 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 008265 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (572)
Q Consensus 195 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 274 (572)
..++..+...|..+.|+++.+.- ..-...+...|+++.|.++.+.+ .+...|..+...+.+.|+++.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~-------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~ 699 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ-------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKL 699 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH-------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc-------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHH
Confidence 55666666777777777665321 11133456678888888775443 356788888888888888888
Q ss_pred HHHHHHHHH
Q 008265 275 SRAIYEDLR 283 (572)
Q Consensus 275 a~~~~~~m~ 283 (572)
|.+.|..+.
T Consensus 700 A~~~y~~~~ 708 (814)
T 3mkq_A 700 AIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcc
Confidence 888888765
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.43 Score=39.30 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=73.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHH
Q 008265 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (572)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (572)
..|+++.|.++.+.+ -+...|..|.......|+++-|++.|..... +..+.--|.-.|+.+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------HHHHHHHHHHHTCHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------HHHHHHHHHHhCCHH
Confidence 347777777776655 2777777777777777777777777766542 223333444556666
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
...++-+.....| -++....++.-.|+++++.++|.+..+ -|... -.....|-.+.|.++.+.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 6665555555443 245556666667777777777744321 11111 1112245667777776655
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.06 E-value=0.16 Score=37.21 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=44.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
....+.+.|++++|...|++..+. .+.+.. .+..+..+|...|++++|++.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345667788888888888888763 133556 7788888888888888888888888776
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.43 Score=39.26 Aligned_cols=98 Identities=9% Similarity=0.009 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 247 (572)
.|+++.|.++.+.+ ++...|..|.+.....|+++-|.+.|..... +..+.-.|.-.|+.+.-.++-+..
T Consensus 18 lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS----FDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp TTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 79999999988766 2345688888888888888888888776643 444555555566666655554444
Q ss_pred HhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (572)
Q Consensus 248 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 282 (572)
...| -++.....+.-.|+++++.++|.+.
T Consensus 87 ~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 87 QTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 3332 2344455556667777777776443
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.74 E-value=1.1 Score=34.69 Aligned_cols=138 Identities=12% Similarity=-0.018 Sum_probs=86.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 008265 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313 (572)
Q Consensus 234 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~ 313 (572)
.|.+++..++..+.... .+..-||.+|.-....-+-+-..++++..-+- .|. ..++++.....-+-
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi--------s~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL--------DKCQNLKSVVECGV 85 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG--------GGCSCTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc--------HhhhcHHHHHHHHH
Confidence 47777777777776654 35566677776666666666666666655432 110 12344544444443
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC
Q 008265 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (572)
.+- .+...+...++.+...|+.+.-.+++.++.. . .+|+....-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 86 ~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~---n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 86 INN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK---N--NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred Hhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc---c--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 332 2455666677777777777777777776422 1 35667777777777777787777777777777777
Q ss_pred CC
Q 008265 394 VT 395 (572)
Q Consensus 394 ~~ 395 (572)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.60 E-value=0.58 Score=33.99 Aligned_cols=66 Identities=12% Similarity=-0.011 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 322 ADMASYNILLKACCLAGN---TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.+...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-----p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-----PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345556666666654443 577777777777631 334556666667777777777777777777765
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.39 E-value=0.26 Score=39.44 Aligned_cols=67 Identities=15% Similarity=0.065 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHccc---cHHHHHHHHHHHHHCCCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 360 KLDVFTYSTIVKVFADAK---WWQMALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 360 ~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.++..+...+..++++.+ ++++++.+|++..+.. .| ....+-.+.-+|.+.|++++|.++++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 356666666667777766 5667777777777653 23 3445555666777777777777777777765
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.19 E-value=0.36 Score=35.97 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL------SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
..+..|...+.+.|+++.|...|+...+.- ..+....+..+..+|.+.|+++.|...+++..+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 445678888888999999999988776531 2245678889999999999999999999998865
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.86 E-value=0.58 Score=42.02 Aligned_cols=79 Identities=9% Similarity=0.001 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC--CCHH
Q 008265 221 DILFCNFVREFGK-----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQNVT--LNIY 292 (572)
Q Consensus 221 ~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~--p~~~ 292 (572)
+..|..+...|.+ .|+.++|.+.|++..+.+..-+..++......++.. |+.+++.+.+++....... |+..
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 3567777788888 599999999999998865432467777788888884 9999999999999988666 6655
Q ss_pred HHHHHHH
Q 008265 293 VFNSLMN 299 (572)
Q Consensus 293 ~~~~ll~ 299 (572)
..+.+-+
T Consensus 279 lan~~~q 285 (301)
T 3u64_A 279 LLVILSQ 285 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.61 E-value=0.95 Score=36.23 Aligned_cols=84 Identities=14% Similarity=0.100 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCHhHH
Q 008265 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAG---LVEQAMHLFEEMLQAGCEP--NSQCCNILLQACVEACQFDRA 452 (572)
Q Consensus 378 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A 452 (572)
.+..+.+-|.+..+.|. ++..+...+..++++.+ +++++..+|++..+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34455555555555443 45555555666666665 4556666666666553 23 233444444556666666666
Q ss_pred HHHHHHhhhcc
Q 008265 453 FRLFRSWTLSK 463 (572)
Q Consensus 453 ~~~~~~m~~~~ 463 (572)
.+.++.+.+..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 66666665544
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.55 E-value=0.76 Score=34.14 Aligned_cols=70 Identities=10% Similarity=-0.054 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV--LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+..-+..+...+.+.|+++.|...|+...+...... -.+...++..|..+|.+.|+++.|+..+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344455566666666666666666666655322110 0123345555555555555555555555555543
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.27 E-value=1.2 Score=34.43 Aligned_cols=84 Identities=7% Similarity=-0.061 Sum_probs=64.6
Q ss_pred CCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 204 ~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
.|+.......+-.+-.....+...+.....+|+-+.-.+++..+.. +-+|++...-.+..+|.+.|+..+|.+++.+.-
T Consensus 74 C~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 74 CQNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp CSCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3445555555555555556778888999999999999999988644 345778888889999999999999999999999
Q ss_pred hCCCC
Q 008265 284 SQNVT 288 (572)
Q Consensus 284 ~~g~~ 288 (572)
++|++
T Consensus 153 ~kG~k 157 (172)
T 1wy6_A 153 KKGEK 157 (172)
T ss_dssp HTTCH
T ss_pred HhhhH
Confidence 98863
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.16 E-value=0.66 Score=33.67 Aligned_cols=66 Identities=11% Similarity=-0.015 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHcccc---HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 361 LDVFTYSTIVKVFADAKW---WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 361 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.|...+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455555555555543333 56677777666665322 4455555666666677777777777776654
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.93 E-value=1.4 Score=34.83 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHH------HHHccccHHHHHHHHHHH
Q 008265 323 DMASYNILLKACCLAGNT------VLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVK------VFADAKWWQMALKVKEDM 389 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~------~~~~~g~~~~a~~~~~~m 389 (572)
|..+|-..+...-+.|+. +...++|+..... ++|+.. .|...|. .+...+++++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-----~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-----LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-----SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-----CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 566666666666666777 6777788777653 455421 1111111 123347888899999988
Q ss_pred HHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 390 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
.+.+-+. ...|....+--.+.|++..|.+++......+.+| ...+...+.
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 7653333 5666666666678899999999999888876544 344444433
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.86 E-value=0.82 Score=41.05 Aligned_cols=81 Identities=11% Similarity=0.006 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcc
Q 008265 307 FTLEVYKNMQKLGVMAD---MASYNILLKACCLA-----GNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADA 376 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 376 (572)
.|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++..++ .|+ ..++......++..
T Consensus 181 ~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L------nP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 181 AAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY------CSAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH------CCTTCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh------CCCCCchHHHHHHHHHHHh
Confidence 33444444433 5555 34566666666663 6666666666666652 342 44555555555553
Q ss_pred -ccHHHHHHHHHHHHHCCCC
Q 008265 377 -KWWQMALKVKEDMLSAGVT 395 (572)
Q Consensus 377 -g~~~~a~~~~~~m~~~g~~ 395 (572)
|+.+++.+.+++.......
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGG
T ss_pred cCCHHHHHHHHHHHHcCCCC
Confidence 6666666666666665444
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.74 E-value=6.6 Score=38.22 Aligned_cols=56 Identities=13% Similarity=-0.047 Sum_probs=36.5
Q ss_pred CChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc
Q 008265 85 GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 85 g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~ 142 (572)
|+++.|++.+..+.+.....+. ..-+...+..++..+...|+|+...+.+.-+.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d--~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASD--LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCS--TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccc--hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6788888877666644221110 0012556777888899999999988877766554
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.95 E-value=3.4 Score=39.40 Aligned_cols=130 Identities=7% Similarity=-0.076 Sum_probs=81.2
Q ss_pred chhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC--CCCCccc--chHHHHHHHHhcCCChHHHHHhhhcCCCchhH
Q 008265 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF--RLPVKEL--DEEFRIVQLCVNKPDVNLAIRYACIVPRADIL 223 (572)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 223 (572)
...|...|..++.........|+.+.|...+++.... |-...+. ..|. ......++.. .-..
T Consensus 108 ~~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~------------~~~r~~l~~~--~~~a 173 (388)
T 2ff4_A 108 NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV------------EPFATALVED--KVLA 173 (388)
T ss_dssp GGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTH------------HHHHHHHHHH--HHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHH------------HHHHHHHHHH--HHHH
Confidence 3345555555555444434457788888888877654 2111111 0111 0000111100 0134
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHH
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-----NVTLNIY 292 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~ 292 (572)
...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+. |+.|...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 5567788889999999999888887653 347789999999999999999999999987642 6666543
No 234
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.92 E-value=12 Score=38.05 Aligned_cols=249 Identities=10% Similarity=-0.000 Sum_probs=142.8
Q ss_pred HHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH-
Q 008265 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM- 273 (572)
Q Consensus 195 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~- 273 (572)
..-+..+.+.+++...+.++...|.+...-.....+....|+...|......+=..|. .....+..++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCH
Confidence 3456777778899999998887566666667788888889998888777766644432 23446788888888777643
Q ss_pred -HHHHHHHHHHhCCCCCCHHHHHHHHHH--------------hcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHH
Q 008265 274 -KSRAIYEDLRSQNVTLNIYVFNSLMNV--------------NAHDLKFTLEVYKNMQKLGVMADMAS---YNILLKACC 335 (572)
Q Consensus 274 -~a~~~~~~m~~~g~~p~~~~~~~ll~~--------------~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~ 335 (572)
...+-++.+...| +...-..++.. ..++...+...... +.++... +...+.-+.
T Consensus 155 ~~~~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 155 LAYLERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFASVA 226 (618)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHHHHH
Confidence 3444444444443 11111112111 11222222222111 1223222 122233333
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFT----YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 411 (572)
+ .+.+.|...+..... .. ..+... +..+.......+...++...+....... .+.......+....+.
T Consensus 227 r-~d~~~A~~~~~~~~~---~~--~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQ---AQ--QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGT 298 (618)
T ss_dssp H-HCHHHHHHHHHHHHH---HT--TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred h-cCHHHHHHHHHhhhh---cc--CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHC
Confidence 3 377888888888764 22 223332 2333333444553455666666655442 3333344455555677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 412 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
|+++.|...|..|...... ...-.--+..++.+.|+.++|..+|+.+.+
T Consensus 299 ~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999988653211 232233445577889999999999998864
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.00 E-value=2.7 Score=43.69 Aligned_cols=127 Identities=11% Similarity=-0.037 Sum_probs=79.1
Q ss_pred hhhhhHHHHHHHHHHhhhhh-HHHHHHHHHHHHhCCCCCcccch-HHHHHHHHhcCCC-hHHHHHhhhc-----------
Q 008265 151 DGSGFKLLKNECQRLLDSGE-VEMFVGLMEVLEEFRLPVKELDE-EFRIVQLCVNKPD-VNLAIRYACI----------- 216 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~-~~~a~~~~~~----------- 216 (572)
.+.+...+++.+.. .++ .+.|+.+|+++.... |..... ...++..+...++ --+|.++...
T Consensus 247 ~N~L~~~Ll~~~~~---t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 247 NNYLMYSLKSFIAI---TPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLND 321 (754)
T ss_dssp SSHHHHHHHHHHHT---CGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 44455555554322 555 688999999988753 221111 2233333333332 1223333221
Q ss_pred CCCch-----------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 217 VPRAD-----------ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 217 ~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
+++.+ .....-...+...|+++.|+.+-.+....- +-+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 22221 123333567788999999999999988752 2356799999999999999999999999874
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.72 E-value=3.3 Score=31.83 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHccccHHH---HHHHHHHHHHCCCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 361 LDVFTYSTIVKVFADAKWWQM---ALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
++..+-..+..++.+..+... ++.++.++.+.+ .| .....-.|.-++.+.|++++|.++++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 555555555666666554443 677777766553 12 3344455666677777777777777777765
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.95 E-value=1.8 Score=41.30 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
...++..+...|+.+++...+..+.... +-+...|..+|.++.+.|+..+|.+.|++..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456777778888888888888887653 55778888888888888998888888887764
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.72 E-value=2.1 Score=32.86 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=65.3
Q ss_pred HHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHH
Q 008265 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ---AMHLFEEMLQAGCEP--NSQCCNILLQACVE 445 (572)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~ 445 (572)
..-.....+..+.+-+......|. ++..+--.+.+++.+.....+ ++.+++++.+.+ .| .....-.|.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence 333334455666667776665554 677777778888888887666 888899887764 23 33444556668999
Q ss_pred hCCHhHHHHHHHHhhhccc
Q 008265 446 ACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 446 ~g~~~~A~~~~~~m~~~~~ 464 (572)
.|++++|.+.++.+.+..+
T Consensus 87 lg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCT
T ss_pred hhhHHHHHHHHHHHHHhCC
Confidence 9999999999999887543
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.05 E-value=5.3 Score=41.50 Aligned_cols=126 Identities=12% Similarity=0.083 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC---ChHHHHHHHHHHHHc------CCC-CCH----
Q 008265 260 RTIIDVCGICGD-YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQKL------GVM-ADM---- 324 (572)
Q Consensus 260 ~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~a~~~~~~m~~~------~~~-~~~---- 324 (572)
..+++.+...|+ ++.|..+|+++.+.....+......++..... +--+|.+++.+..+. ... .+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555566 57788888888776321122222233332221 122344444433221 111 111
Q ss_pred ------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 325 ------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 325 ------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.....-.+.|...|+++.|..+-++.... .+.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-----aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-----ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-----CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222244567889999999999998873 24446699999999999999999999888873
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.29 E-value=12 Score=29.60 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=45.9
Q ss_pred hHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHH
Q 008265 130 DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL 209 (572)
Q Consensus 130 ~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 209 (572)
++.+++|++.... +.|+.......|-.+.--++.+...++.++|.++|+.+++.. .. +
T Consensus 36 ~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h---Kk----------------F-- 93 (161)
T 4h7y_A 36 NKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC---KK----------------F-- 93 (161)
T ss_dssp HHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC---TT----------------B--
T ss_pred HHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---HH----------------H--
Confidence 6777777776664 455433222222222222223333455566666665554320 00 0
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008265 210 AIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254 (572)
Q Consensus 210 a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 254 (572)
..+|-.....=.+.|++..|.+++......+..|
T Consensus 94 -----------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 94 -----------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -----------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 1344445555556666666666666666655444
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.59 E-value=6.3 Score=28.64 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008265 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~ 371 (572)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++|+-++.. . .....+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~---~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--A---GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--T---TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--h---cCchhhHHHHHH
Confidence 44555556666677788888888888888888888888888887753 2 233345665553
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.97 E-value=58 Score=34.78 Aligned_cols=152 Identities=9% Similarity=-0.059 Sum_probs=76.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-H--Hh
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC--GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-N--VN 301 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~--~~ 301 (572)
|...+.-.|+-+-...++..+.+. .+......+.-++ .-.|+.+.+..+.+.+... .....-|...+ . +|
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAy 570 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHT
T ss_pred HhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHh
Confidence 444455667777777777766553 1223333333333 3567777777777777654 11223333222 2 34
Q ss_pred c--CChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccc
Q 008265 302 A--HDLKFTLEVYKNMQKLGVMADMASYNILLK--ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377 (572)
Q Consensus 302 ~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 377 (572)
+ |+......++..+... ++..+-...+. ++...|+.+.+.++++.+.+ .+ .|.+.--.++.-+....|
T Consensus 571 aGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~---~~--d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK---SH--NAHVRCGTAFALGIACAG 642 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG---CS--CHHHHHHHHHHHHHHTSS
T ss_pred cCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh---cC--CHHHHHHHHHHHHHhccC
Confidence 4 4555555577777653 23233333333 33345666555666654443 22 344443333333433333
Q ss_pred cH-HHHHHHHHHHHH
Q 008265 378 WW-QMALKVKEDMLS 391 (572)
Q Consensus 378 ~~-~~a~~~~~~m~~ 391 (572)
.. .++.+++..+..
T Consensus 643 n~~~~aid~L~~L~~ 657 (963)
T 4ady_A 643 KGLQSAIDVLDPLTK 657 (963)
T ss_dssp SCCHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHcc
Confidence 32 566667777754
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.65 E-value=15 Score=26.68 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 378 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
+.-+..+-++.+-...+-|+.....+.+.+|-+.+++..|.++|+-++.+- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344556666666666777777777777777777777777777777776432 233445666554
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.13 E-value=18 Score=27.88 Aligned_cols=74 Identities=11% Similarity=-0.055 Sum_probs=54.0
Q ss_pred CchhhhHHHHHHHhHhhcCC---hhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcC
Q 008265 67 LSSRNDYYADMASKLAKDGR---LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (572)
Q Consensus 67 p~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~ 143 (572)
+.++..+--....++.+..+ ..+++.+++++.+.+..- ..+.+..+..++.+.|++++|+...+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-------~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~- 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH- 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 44445666666677777754 457899999998875321 2555666777899999999999999999886
Q ss_pred CCCcch
Q 008265 144 VAPLEL 149 (572)
Q Consensus 144 ~~p~~~ 149 (572)
.|+..
T Consensus 108 -eP~N~ 112 (134)
T 3o48_A 108 -ERNNK 112 (134)
T ss_dssp -CTTCH
T ss_pred -CCCCH
Confidence 67543
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.90 E-value=50 Score=36.59 Aligned_cols=190 Identities=7% Similarity=-0.014 Sum_probs=111.7
Q ss_pred HHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C------------------CC
Q 008265 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH----L------------------SS 253 (572)
Q Consensus 196 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~------------------~~ 253 (572)
.++..+...+..+.+.++....+.+....-.+..+|...|++++|.+.|.+.... . ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~ 896 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN 896 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccc
Confidence 4666677778888888877777777766666777888888888888888653110 0 01
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHH
Q 008265 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN----IYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327 (572)
Q Consensus 254 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~ 327 (572)
.-..-|..++..+-+.|.++.+.++-....+..-.-+ ...|..++.++. +++++|...+-.+.....+ ....
T Consensus 897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cL 974 (1139)
T 4fhn_B 897 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCL 974 (1139)
T ss_dssp SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHH
Confidence 1124567788888888888888887776654321111 124666666543 7888887777777654443 3444
Q ss_pred HHHHHHHHHcC------------ChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHH-HHHHH
Q 008265 328 NILLKACCLAG------------NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK-VKEDM 389 (572)
Q Consensus 328 ~~ll~~~~~~g------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m 389 (572)
..++..++..| ..++..+++..--+.... ......-|..|-.-+...|++.+|-. +|+.+
T Consensus 975 r~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~--~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 975 LDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMIN--VESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHH--HCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCc--cccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 55555444433 456666666543221101 11122344555555566677655433 34443
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.35 E-value=13 Score=28.64 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008265 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~ 371 (572)
+..+-++.+....+.|++....+.+.+|-+.+|+..|.++|+-++.. ..+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-----~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-----AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----cCCchhhHHHHHH
Confidence 34445555566677888888889999999999999999998888763 2334445666653
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.08 E-value=43 Score=37.11 Aligned_cols=170 Identities=10% Similarity=-0.022 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 302 (572)
....++..+.+.+.++.+.++..... .+...--.+..+|..+|++++|.+.|++... |+..+....
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~-------- 879 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF-------- 879 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC--------
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh--------
Confidence 34457778888899988877665432 2444444566789999999999999987532 221110000
Q ss_pred CChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcccc
Q 008265 303 HDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKW 378 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~ 378 (572)
..... +..+.... ...-..-|..++..+.+.+.++.+.++-....+. .+.-.++ ...|..+.+++...|+
T Consensus 880 ~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~--~~~~~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 880 AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS--KETDDEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH--CCSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccCCChhhHHHHHHHHHHHHHhhCC
Confidence 00000 11111110 0111233555566666666666666655554432 1101111 1246666677777777
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCH
Q 008265 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (572)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 414 (572)
+++|...+-.+.....+ ......++..++..|..
T Consensus 954 ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 954 FDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCCh
Confidence 77777777666665332 34455555555555443
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.09 E-value=17 Score=26.33 Aligned_cols=79 Identities=8% Similarity=-0.139 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHH
Q 008265 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~ 314 (572)
...++|.-+-+.+...+. ...+--.-+..+.+.|++++|..+.+.+. .||...|-++-....|-.+++..-+..
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEYRLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHHH
Confidence 456666666666655432 11111222344667788888877776655 577777777777777776666666656
Q ss_pred HHHcC
Q 008265 315 MQKLG 319 (572)
Q Consensus 315 m~~~~ 319 (572)
+...|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 65544
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.05 E-value=24 Score=27.28 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
-+..+-++.+....+-|+.......+.+|-+.+++..|.++|+-++.+- .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3455556666666777888888888888888888888888888776542 344556666664
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.74 E-value=20 Score=28.98 Aligned_cols=72 Identities=8% Similarity=0.052 Sum_probs=52.6
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhc-CChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~ 142 (572)
-..+-.-+..+...|.++.|+-+.+.+.... .+|+..+.....+++.....++...|++.+|...|++..+.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4556667788999999999999888866542 23332233334667778888999999999999999886543
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.05 E-value=26 Score=33.83 Aligned_cols=95 Identities=11% Similarity=0.091 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCH----HH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKH--LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS---QNVTLNI----YV 293 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~g~~p~~----~~ 293 (572)
+...+...|.+.|+++.|.+.|.++... +..--...+-.+|+.+...+++..+...+++... .+-.|+. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556777788888888888888887664 2333456777788888888888888888887653 2322332 22
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 008265 294 FNSLMNVNAHDLKFTLEVYKNMQK 317 (572)
Q Consensus 294 ~~~ll~~~~~~~~~a~~~~~~m~~ 317 (572)
|..++....+++..|-..|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 344444445788888777776654
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=74.57 E-value=12 Score=30.13 Aligned_cols=123 Identities=13% Similarity=0.057 Sum_probs=63.3
Q ss_pred hhHhhhhhCChhHHHHHHHHhhhcC-CCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCC-CcccchHHH
Q 008265 119 GIVKSIREGRIDCVVGVLKKLNELG-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-VKELDEEFR 196 (572)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 196 (572)
-+..+...|.++.|+-+...+.... ..|+...-..-+.++.-....+...+++..|...|++.++.... ++.......
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3455678888888888777655541 23333222223444443334556689999999999986543211 111111100
Q ss_pred HHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (572)
Q Consensus 197 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 249 (572)
+. ....... -++. +.+..+---+..+|.+.|++++|+.+++.+..
T Consensus 106 ~~----~~ss~p~---s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 106 TG----NSASTPQ---SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cc----ccCCCcc---cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 00 0000000 0111 12223444477888888999999888887644
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.87 E-value=16 Score=26.40 Aligned_cols=79 Identities=9% Similarity=-0.154 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHH
Q 008265 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~ 314 (572)
...++|.-+-+.+...+. ...+--.-+..+.+.|++++|..+.+.+. .||...|-++-....|-.+++..-+..
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEWHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHHH
Confidence 456666666666655432 11111222344667788888877766554 578788877777777777777666666
Q ss_pred HHHcC
Q 008265 315 MQKLG 319 (572)
Q Consensus 315 m~~~~ 319 (572)
+...|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 66554
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=73.53 E-value=30 Score=27.10 Aligned_cols=68 Identities=9% Similarity=0.072 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHccc---cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 360 KLDVFTYSTIVKVFADAK---WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 360 ~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.|+..+--.+..++.+.. +..+++.+++++.+.+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 355555444555555544 34466777777666533224445556666777777777777777777765
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.59 E-value=24 Score=25.48 Aligned_cols=32 Identities=6% Similarity=-0.092 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHhhcHHHHHHHHHHHHhCC
Q 008265 512 KPTTTTYNILMKACCTDYYRVKALMNEMRTVG 543 (572)
Q Consensus 512 ~p~~~~~~~ll~a~~~~~~~a~~~~~~m~~~g 543 (572)
-||...|-+|-..-..-.+.+..-+.++...|
T Consensus 67 ~pdlepw~ALce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 67 WPALEPWFALCEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp CGGGHHHHHHHHHHTTCHHHHHHHHHHHHTCS
T ss_pred CchHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 57777776665544444555555555666555
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.28 E-value=25 Score=25.47 Aligned_cols=32 Identities=9% Similarity=0.005 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHhhcHHHHHHHHHHHHhCC
Q 008265 512 KPTTTTYNILMKACCTDYYRVKALMNEMRTVG 543 (572)
Q Consensus 512 ~p~~~~~~~ll~a~~~~~~~a~~~~~~m~~~g 543 (572)
-||...|-+|-..-..-.+.+..-+.++...|
T Consensus 68 ~pdlepw~ALce~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 68 YPDLEPWLALCEYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp CGGGHHHHHHHHHHHTCHHHHHHHHHHHTTCC
T ss_pred CchHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 56666666554444444455555555555544
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=71.02 E-value=34 Score=26.43 Aligned_cols=66 Identities=9% Similarity=0.125 Sum_probs=29.1
Q ss_pred CchhhHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 396 PNTITWSSLINACANAGLV---EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 396 p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
|+..+--.+.+++.+..+. .+++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333333344444444432 23455555554433111223333444455555555555555555443
No 258
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=66.96 E-value=58 Score=29.71 Aligned_cols=105 Identities=11% Similarity=0.103 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccccHHHHHH
Q 008265 310 EVYKNMQKLGVMADMAS--YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL---DVFTYSTIVKVFADAKWWQMALK 384 (572)
Q Consensus 310 ~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~ 384 (572)
.+.+.+.+.|..++... -.+.+...+..|..+.+..++..- | ..+ |..-++.|..+ ++.|+.+
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~------~-~~vn~~d~~G~TpL~~A-~~~g~~~---- 287 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE------H-IEINDTDSDGKTALLLA-VELKLKK---- 287 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTST------T-CCTTCBCTTSCBHHHHH-HHTTCHH----
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhc------C-CcccCcCCCCCCHHHHH-HHcCCHH----
Confidence 34444556665544211 122344455667666555444311 1 111 22222333333 3445543
Q ss_pred HHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 008265 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (572)
Q Consensus 385 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 433 (572)
+.+.+.+.|..++..+ .+...++.|+.+ +.+.+.+.|-.||.
T Consensus 288 iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 288 IAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 3444556676666554 233334555543 44455566655553
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.27 E-value=73 Score=30.57 Aligned_cols=99 Identities=13% Similarity=-0.022 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC---CCCCchhhH-
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA---GVTPNTITW- 401 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~- 401 (572)
+...+...|.+.|+++.|.+.|.++...... ..--...+-..|+.+...+++..+...+.+.... +-.|+...-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS--TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC--CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 4455667777777777777777777654311 1223446666677777777777777777766432 222222110
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 402 -SSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 402 -~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
..-...+...+++.+|...|-+...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 0111112345677777777766654
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.58 E-value=25 Score=31.01 Aligned_cols=56 Identities=20% Similarity=0.117 Sum_probs=39.6
Q ss_pred HHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
....+.|.++++++....-++.... |...=..+++-+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455677888888777777666332 5566667777888888888888877777664
No 261
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.86 E-value=66 Score=26.92 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=50.2
Q ss_pred CCCCHH---HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008265 359 LKLDVF---TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (572)
Q Consensus 359 ~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 432 (572)
..-|.. .|-..+..+ .++....+.++|..|...|+--.. ..|......+...|++.+|.++|+.-.+.+-.|-
T Consensus 73 YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344544 333334333 244567888899988888765433 4567777778888999999999998888877773
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.74 E-value=49 Score=27.71 Aligned_cols=57 Identities=7% Similarity=0.068 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 170 EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (572)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 249 (572)
...++.++|..|...|+-..- ...|......+-..|++++|.++|..-.+
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~------------------------------AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKL------------------------------SLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTB------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHCCCcHHH------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366889999999888775432 25677778888888999999999999888
Q ss_pred cCCCCcH
Q 008265 250 HLSSPNM 256 (572)
Q Consensus 250 ~~~~~~~ 256 (572)
.+-.|-.
T Consensus 144 ~~A~P~~ 150 (202)
T 3esl_A 144 NNCRPYN 150 (202)
T ss_dssp TTCBSHH
T ss_pred cCCccHH
Confidence 8777743
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=59.26 E-value=1e+02 Score=27.91 Aligned_cols=22 Identities=23% Similarity=-0.041 Sum_probs=11.2
Q ss_pred hHHHHHHHHhcCCChHHHHHhh
Q 008265 193 EEFRIVQLCVNKPDVNLAIRYA 214 (572)
Q Consensus 193 ~~~~ll~~~~~~g~~~~a~~~~ 214 (572)
.+..+...|.+.|++.+|...|
T Consensus 136 LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 136 LHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHH
Confidence 3444555555555555555544
No 264
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.74 E-value=16 Score=32.28 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=36.6
Q ss_pred HhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccch-HHHHHH
Q 008265 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDE-EFRIVQ 199 (572)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~ll~ 199 (572)
...++.|+.+....++ +.|..++..........+..++ ..|+.+-+ +.+.+.|..+..... -.+.+.
T Consensus 10 ~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~----~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 10 IKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAV----QMSREDIV----ELLLRHGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHH----HTTCHHHH----HHHHHTTCCTTCCCTTCCCHHH
T ss_pred HHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHH----HcCCHHHH----HHHHHcCCCCcccCCCCCCHHH
Confidence 3456777766444444 4454444321211222222222 24665544 444444544332111 112344
Q ss_pred HHhcCCChHHHHHhhhc
Q 008265 200 LCVNKPDVNLAIRYACI 216 (572)
Q Consensus 200 ~~~~~g~~~~a~~~~~~ 216 (572)
..+..|+.+-+..+++.
T Consensus 78 ~A~~~~~~~~v~~Ll~~ 94 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSK 94 (285)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 44455666655555543
No 265
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.62 E-value=1e+02 Score=28.60 Aligned_cols=24 Identities=8% Similarity=-0.013 Sum_probs=12.1
Q ss_pred HHHHHHHHccccHHHHHHHHHHHH
Q 008265 367 STIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
+.++.-|...|+.++|.+.++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 344444555555555555555543
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=58.53 E-value=1.1e+02 Score=28.02 Aligned_cols=77 Identities=6% Similarity=-0.023 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV- 300 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~- 300 (572)
.....+...|.+.+++.+|+.-|- .|-.+....|..++.-+.+.+... .+|.+.-.+++.-
T Consensus 137 ~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~yL 198 (336)
T 3lpz_A 137 ELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLPYL 198 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHHHH
Confidence 344556666667777777766652 122333455555555444444311 2334444444443
Q ss_pred hcCChHHHHHHHHHHH
Q 008265 301 NAHDLKFTLEVYKNMQ 316 (572)
Q Consensus 301 ~~~~~~~a~~~~~~m~ 316 (572)
+.++...|..+++...
T Consensus 199 ~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 199 LVANVRAANTAYRIFT 214 (336)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 3366666666555443
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=58.26 E-value=58 Score=28.76 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=78.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH
Q 008265 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (572)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (572)
+....+.|+++++++....-.+. -+-|...-..|+.-+|-.|++++|.+-++...+. .|+...-..+....
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~-----~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~l-- 74 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKA-----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHL-- 74 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHH--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHH--
Confidence 34567889999999888776652 3567778889999999999999999999988876 44432221111111
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHH--HhCCHhHHHHHHHHhhhc
Q 008265 411 AGLVEQAMHLFEEMLQAGCEP-----NSQCCNILLQACV--EACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 462 (572)
-.|+..-.++...+-.| ...-...++.+.. ..|+.++|.++-.+..+.
T Consensus 75 ----I~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 75 ----VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22333334444433222 3344566666654 569999999998887654
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=57.18 E-value=1.2e+02 Score=27.87 Aligned_cols=165 Identities=10% Similarity=0.015 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCCHHHHHHHH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI----YEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll 298 (572)
.|-++..-|.+.+++++|.+++..-. ..+.+.|+...|-++ .+-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 55666677777888888877764321 112334444333333 34445556777776666666
Q ss_pred HHhcC----ChHHHHHHHHHH----HHcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008265 299 NVNAH----DLKFTLEVYKNM----QKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (572)
Q Consensus 299 ~~~~~----~~~~a~~~~~~m----~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (572)
..... ..+ -..+.+.+ .+.| ..-|......+...|.+.+++.+|+..|- . | ..++...|..
T Consensus 102 ~L~~~~~~~~p~-r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l-----g-~~~s~~~~a~ 172 (336)
T 3lpz_A 102 GCLRLFQPGEPV-RKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L-----G-TKESPEVLAR 172 (336)
T ss_dssp HHHTTSCTTCHH-HHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T-----S-CTTHHHHHHH
T ss_pred HHHHhCCCCCcH-HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h-----c-CCchHHHHHH
Confidence 65432 111 12223322 2222 34466677777888888888888877762 1 1 1233356655
Q ss_pred HHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
++.-+...+... ++|...-..++ .|...+++..|..+++...+
T Consensus 173 mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 173 MEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 554443333210 12222223333 34556788888887766653
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.61 E-value=42 Score=26.67 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008265 172 EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL 251 (572)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 251 (572)
+++.++|..|...|+-..- ...|......+-..|++++|.++|..-.+.+
T Consensus 82 ~dp~~if~~L~~~~IG~~~------------------------------AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLS------------------------------SPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTB------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCcHHH------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4477888888777664332 2567777778888899999999998888877
Q ss_pred CCCcH
Q 008265 252 SSPNM 256 (572)
Q Consensus 252 ~~~~~ 256 (572)
-.|-.
T Consensus 132 A~P~~ 136 (152)
T 4a1g_A 132 AEPRE 136 (152)
T ss_dssp CBSHH
T ss_pred CccHH
Confidence 77743
No 270
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.10 E-value=1.7e+02 Score=28.16 Aligned_cols=156 Identities=8% Similarity=0.093 Sum_probs=79.3
Q ss_pred CChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHc
Q 008265 303 HDLKFTLEVYKNMQKL--GVMAD---MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV--FTYSTIVKVFAD 375 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~--~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~ 375 (572)
|++.+|..++..+... |.... ...+...+..|...+++..|..++..+..........|+. ..+...+..+..
T Consensus 151 g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~ 230 (445)
T 4b4t_P 151 GKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLH 230 (445)
T ss_dssp TCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHH
Confidence 6677777777666432 21111 2345566777888888888888888765322122112222 245666666777
Q ss_pred cccHHHHHHHHHHHHHC-CCCCchhhHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--CC
Q 008265 376 AKWWQMALKVKEDMLSA-GVTPNTITWS----SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA--CQ 448 (572)
Q Consensus 376 ~g~~~~a~~~~~~m~~~-g~~p~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~ 448 (572)
.+++.+|-..|.++-+. ...-|...+. .++.+..-.+....-..++........-++...|..++.+|... .+
T Consensus 231 e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~ 310 (445)
T 4b4t_P 231 KREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMR 310 (445)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSS
T ss_pred hhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhh
Confidence 78888887777666432 0011222121 12222222222222222233322222234566777888887654 34
Q ss_pred HhHHHHHHHH
Q 008265 449 FDRAFRLFRS 458 (572)
Q Consensus 449 ~~~A~~~~~~ 458 (572)
++.+.+.|..
T Consensus 311 ~~~~~~~~~~ 320 (445)
T 4b4t_P 311 WPIVQKTYEP 320 (445)
T ss_dssp HHHHHHHTCS
T ss_pred hHHHHHHHHH
Confidence 5555555543
No 271
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.26 E-value=80 Score=24.16 Aligned_cols=67 Identities=10% Similarity=0.083 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCC
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YMKSRAIYEDLRSQNVTLN 290 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 290 (572)
....++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4566788888888888888888887532111 22344445555555432 4667778888877765443
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.96 E-value=46 Score=26.81 Aligned_cols=56 Identities=9% Similarity=0.169 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008265 172 EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL 251 (572)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 251 (572)
+.+.++|..|...|+-..- ...|......+-..|++.+|.++|..-.+.+
T Consensus 77 ~~p~~if~~L~~~~IG~~~------------------------------AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSL------------------------------AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTB------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCcchhh------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 5577888888888765432 2466777777888899999999999888887
Q ss_pred CCCcHH
Q 008265 252 SSPNMY 257 (572)
Q Consensus 252 ~~~~~~ 257 (572)
-.|-..
T Consensus 127 A~P~~~ 132 (164)
T 2wvi_A 127 AEPLER 132 (164)
T ss_dssp CBSHHH
T ss_pred CCcHHH
Confidence 777543
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.51 E-value=46 Score=29.23 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=53.1
Q ss_pred HHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhh
Q 008265 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (572)
Q Consensus 76 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~ 155 (572)
..+...++.|+.+.+..++ +.|.+++.... ..-...+...+..|+.+ +++.+.+.|..++.. +....
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~----~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~-~~~g~ 73 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEE----EGGWTPLHNAVQMSRED----IVELLLRHGADPVLR-KKNGA 73 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCT----TTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCC-CTTCC
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccC----CCCCcHHHHHHHcCCHH----HHHHHHHcCCCCccc-CCCCC
Confidence 4556677788876555544 45544331100 00011233345666654 444445556655432 11122
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchH-HHHHHHHhcCCChHHHHHhhhc
Q 008265 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE-FRIVQLCVNKPDVNLAIRYACI 216 (572)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~ 216 (572)
..+..++ ..|+.+-+ +.+.+.|..+...... .+.+...+..|+.+-...+++.
T Consensus 74 t~L~~A~----~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 74 TPFLLAA----IAGSVKLL----KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127 (285)
T ss_dssp CHHHHHH----HHTCHHHH----HHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHH----HcCCHHHH----HHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh
Confidence 2222222 24665544 4444455444321111 1234444556666655555543
No 274
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.60 E-value=71 Score=25.33 Aligned_cols=68 Identities=10% Similarity=0.072 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCC
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YMKSRAIYEDLRSQNVTLN 290 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 290 (572)
.....++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 34566788888888888888888887532111 23344445555554332 4567778888877765443
No 275
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=45.88 E-value=49 Score=20.19 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=28.5
Q ss_pred hCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 008265 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV 180 (572)
Q Consensus 126 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 180 (572)
..++.+|+++++++.+.|-.|..- +..+- ...+........++|+.
T Consensus 6 ~RDv~RaiELle~lq~sgevp~~K-----L~aLq----~VLqSdF~~aVREVYEh 51 (53)
T 1zl8_A 6 ERDVQRILELMEHVQKTGEVNNAK-----LASLQ----QVLQSEFFGAVREVYET 51 (53)
T ss_dssp HHHHHHHHHHHHHHGGGSSSTHHH-----HHHHH----HHHSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHH----HHHHHHHHHHHHHHHHH
Confidence 456789999999999998777542 22222 22234455555566654
No 276
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.99 E-value=62 Score=27.59 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008265 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250 (572)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 250 (572)
.+++..+|..|...|+-..- ...|......+-..|++++|.++|..-.+.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~------------------------------AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQES------------------------------SIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTB------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCcchhH------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45777888888887765432 256777778888889999999999988887
Q ss_pred CCCCc
Q 008265 251 LSSPN 255 (572)
Q Consensus 251 ~~~~~ 255 (572)
+-.|-
T Consensus 180 ~A~P~ 184 (223)
T 4aez_C 180 KAKPF 184 (223)
T ss_dssp TCBSH
T ss_pred CCccH
Confidence 77774
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.68 E-value=1.3e+02 Score=23.73 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=35.0
Q ss_pred HHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008265 382 ALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 431 (572)
+.++|..|..+|+--.. ..|......+...|++.+|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 67777777777664333 446666666777788888888888777776666
No 278
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=38.96 E-value=1.7e+02 Score=24.70 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc
Q 008265 87 LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 87 ~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~ 142 (572)
++.|+.+|+.+.....-++.....+..-.-...+..|.+.|.+++|.++|++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 57888899888876543333222222223334566789999999999999998775
No 279
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=37.74 E-value=21 Score=29.57 Aligned_cols=15 Identities=7% Similarity=0.233 Sum_probs=7.1
Q ss_pred HHHHHHHHHCCCCCc
Q 008265 383 LKVKEDMLSAGVTPN 397 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~ 397 (572)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 344444555554443
No 280
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=37.01 E-value=6.5 Score=38.21 Aligned_cols=238 Identities=9% Similarity=-0.007 Sum_probs=149.2
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...|..|..+..+.+++.+|++.|-+. -+|+. +..++....+.|.+++-+..+.-..+..-.| ..
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA----~Dps~---------y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~I 118 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSS---------YMEVVQAANTSGNWEELVKYLQMARKKARES--YV 118 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC----SCCCS---------SSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC----CChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--cc
Confidence 478899999999999999988665221 13333 4456677889999999999887776653333 22
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC-----------
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR----------- 219 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------- 219 (572)
++. ++-++ ++.+++.+-.+.+ .-++......+.+-|...|.++.|+-+|..++.
T Consensus 119 Dte----Li~ay---Ak~~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L 183 (624)
T 3lvg_A 119 ETE----LIFAL---AKTNRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL 183 (624)
T ss_dssp THH----HHHHH---HTSCSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSC
T ss_pred HHH----HHHHH---HhhCcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHH
Confidence 333 33333 3355544332221 223344567889999999999999888776522
Q ss_pred --------------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 220 --------------ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 220 --------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
+..||-.+-.+|...+.+..|.-.--.+.-+ +| -...++..|-+.|.+++.+.+++.-...
T Consensus 184 ~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 184 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp SGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 2267888888888888888776665444432 22 2345677788889999988888887632
Q ss_pred CCCCCHHHHHHHHHHhcC-ChHHHHHHHHHHH-HcCCCC------CHHHHHHHHHHHHHcCChHHHH
Q 008265 286 NVTLNIYVFNSLMNVNAH-DLKFTLEVYKNMQ-KLGVMA------DMASYNILLKACCLAGNTVLAQ 344 (572)
Q Consensus 286 g~~p~~~~~~~ll~~~~~-~~~~a~~~~~~m~-~~~~~~------~~~~~~~ll~~~~~~g~~~~a~ 344 (572)
-....-.|+-|--.|++ ++++..+-++..- +.+++. ....|.-++-.|.+..++|.|.
T Consensus 259 -ErAHmGmFTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred -CchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 13456677777666665 4555544443321 112221 1233566666666666666554
No 281
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=36.27 E-value=1.9 Score=41.84 Aligned_cols=85 Identities=9% Similarity=0.010 Sum_probs=62.4
Q ss_pred CcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 008265 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (572)
Q Consensus 188 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 267 (572)
.+.+..|..|.++....+.+.+|+..|-+... ...|..+|.++.+.|.+++-...+...++..-.|. .=+.|+.+|+
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~D-ps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayA 127 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKADD-PSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALA 127 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCCSC-CCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhCCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHH
Confidence 45557788899999999988888887655433 25677888888899999888888877666533333 3367888888
Q ss_pred hcCCHHHH
Q 008265 268 ICGDYMKS 275 (572)
Q Consensus 268 ~~g~~~~a 275 (572)
+.+++.+.
T Consensus 128 k~~rL~el 135 (624)
T 3lvg_A 128 KTNRLAEL 135 (624)
T ss_dssp TSCSSSTT
T ss_pred hhCcHHHH
Confidence 88876553
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.56 E-value=1.7e+02 Score=23.47 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 008265 381 MALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 433 (572)
...++|..|..+|+--.. ..|......+-..|++.+|.++|..-.+.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 366788888888765433 44666677777888888888888888887777744
No 283
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=34.24 E-value=2.7e+02 Score=25.30 Aligned_cols=152 Identities=7% Similarity=-0.048 Sum_probs=0.0
Q ss_pred CCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchh
Q 008265 143 GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI 222 (572)
Q Consensus 143 ~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 222 (572)
++.|... .-..+..-++..-.+...|++++|+..|+.++ +...+-......+.+++.++...-.+ .
T Consensus 103 ~~lP~i~-~l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL-----------~~i~l~~v~~~~e~~e~~eli~icrE--Y 168 (325)
T 3mv2_A 103 QILPYVP-GLDVVNEKMNEGYKNFKLNKPDIAIECFREAI-----------YRITLLMVDDAEDEKLAHKILETARE--Y 168 (325)
T ss_dssp GCCBCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHHHTCCBCSSHHHHHHHHHHHHHHH--H
T ss_pred cCCCCCC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----------HHhheeeeccHHHHHHHHHHHHHHHH--H
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 223 LFCNFVREFGKK---RDLVSALRAYDASKKHLSSPNMY--ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (572)
Q Consensus 223 ~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 297 (572)
+...-++.-.+. .+.....++-..+-...+.|... +....|....|.+++..|-.+-+++.+.+..++
T Consensus 169 ilal~iEl~Rr~l~~~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~------- 241 (325)
T 3mv2_A 169 ILGLSIELERRSLKEGNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP------- 241 (325)
T ss_dssp HHHHHHHHHHHTCCTTCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH-------
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH-------
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC
Q 008265 298 MNVNAHDLKFTLEVYKNMQKLGVM 321 (572)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~~~~ 321 (572)
..++|.+++....+.+..
T Consensus 242 ------~a~qArkil~~ce~~~~D 259 (325)
T 3mv2_A 242 ------RAEQARKIKNKADSMASD 259 (325)
T ss_dssp ------HHHHHHHHHHHHHTSCCC
T ss_pred ------HHHHHHHHHHHHhcCCCC
No 284
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=33.69 E-value=2.7e+02 Score=25.18 Aligned_cols=175 Identities=9% Similarity=-0.049 Sum_probs=95.7
Q ss_pred cCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHH----H
Q 008265 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA----I 278 (572)
Q Consensus 203 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~----~ 278 (572)
..|++-+|.+ .|.++..-|.+.+++++|.+++..-. ..+.+.|+...|-+ +
T Consensus 25 ~~G~yYEAhQ----------~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 25 KAGDYYEAHQ----------TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHTCHHHHHH----------HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHH
T ss_pred hccChHHHHH----------HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHH
Confidence 3455555554 56677778888888888888765432 12334455444443 3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhcC---ChHHHHHHHHH----HHHcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008265 279 YEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKN----MQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGE 349 (572)
Q Consensus 279 ~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~a~~~~~~----m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 349 (572)
.+-+.+.+++++......++..... ....-..+++. -.+.| ..-++.....+...|.+.|++.+|+..|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 4555566777887777777665432 11111223333 33332 234667777888888888888888776641
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcc---ccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 350 VKHLEAKGVLKLDVFTYSTIVKVFADA---KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
| ..-|...+..++.-+... |...++ |...-.. +-.|...|+...|..+++...
T Consensus 160 -------~-~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 160 -------G-THDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp -------S-CHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred -------C-CCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 1 001344554444443333 322221 1121122 223445678888888887764
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=33.61 E-value=2.1e+02 Score=23.99 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=18.7
Q ss_pred HHHhHhhcCChhHHHHHHHHHHhhcCCh
Q 008265 77 MASKLAKDGRLEEFAMIVESVVVSEGNV 104 (572)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~~~~p 104 (572)
.+...+..|+.+.+..+++.+.+.+..+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3455667788887777777766665544
No 286
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.22 E-value=2.7e+02 Score=25.09 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=22.6
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHhh
Q 008265 73 YYADMASKLAKDGRLEEFAMIVESVVVS 100 (572)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 100 (572)
....+|.-|-..|+.++|...++++...
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 3467888899999999999999987433
No 287
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=32.13 E-value=3.3e+02 Score=25.65 Aligned_cols=178 Identities=10% Similarity=-0.044 Sum_probs=83.8
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcC-ChhHHHhHHHHHHHhhhhHhhhhh-CChhHHHHHHHHhhhcCCCCcc
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIRE-GRIDCVVGVLKKLNELGVAPLE 148 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~m~~~~~~p~~ 148 (572)
......|...|.+.|+.++..+++.....--. -+...+ ......++..+... +..+.-.++..+..++.-.-+.
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~----~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r 94 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKA----AKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKR 94 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHH----HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHH----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999888877643211 111111 22333333333332 2223333333333332111000
Q ss_pred hhhhhhhH--HHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHH
Q 008265 149 LFDGSGFK--LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (572)
Q Consensus 149 ~~~~~~~~--~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 226 (572)
. .+. +-++.+.-+...|++.+|..++..+.+.=...++. ..++ .++..
T Consensus 95 ~----flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~---~~ll-----------------------ev~ll 144 (394)
T 3txn_A 95 T----FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDK---NLLV-----------------------EVQLL 144 (394)
T ss_dssp H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT---HHHH-----------------------HHHHH
T ss_pred H----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc---hhHH-----------------------HHHHH
Confidence 0 111 11122222333455555555555444321111110 0000 45666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCCCcHHHHH----HHHHHHH-hcCCHHHHHHHHHHH
Q 008265 227 FVREFGKKRDLVSALRAYDASKKH--LSSPNMYICR----TIIDVCG-ICGDYMKSRAIYEDL 282 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~----~ll~~~~-~~g~~~~a~~~~~~m 282 (572)
-+..|...|++.++...+...... .+.++..... .-.-.+. ..++|..|...|-+.
T Consensus 145 e~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 145 ESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 778888888888888888766433 1212222211 1111234 678888887777654
No 288
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=31.72 E-value=1.6e+02 Score=24.68 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=18.1
Q ss_pred hhhhhCChhHHHHHHHHhhhcCCCCcc
Q 008265 122 KSIREGRIDCVVGVLKKLNELGVAPLE 148 (572)
Q Consensus 122 ~~~~~g~~~~A~~~~~~m~~~~~~p~~ 148 (572)
..+..|+.+.+..+++.+.+.|..++.
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 41 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDI 41 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 456778887777777766666655553
No 289
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=31.16 E-value=1.1e+02 Score=20.05 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHh
Q 008265 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450 (572)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 450 (572)
++-++..++...-++++...+++..+.| ..+..+|.--++.+++..-+.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF~~ 53 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQFLV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 4455555555555677777777777666 566666666666665544433
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.87 E-value=2e+02 Score=22.73 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCc
Q 008265 222 ILFCNFVREFGKKRD--LVSALRAYDASKKHLSSPN 255 (572)
Q Consensus 222 ~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~ 255 (572)
.+...+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 44 ~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 44 LVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 344444555554322 4556677777766655443
No 291
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.12 E-value=1.8e+02 Score=20.95 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH-----HHcCCCCCHHHHHHH
Q 008265 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM-----LQAGCEPNSQCCNIL 439 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~~~~p~~~~~~~l 439 (572)
.|.++.++...-|+.|+..+...++..|...+. + +.++.++. ...|..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 356677777777888888888888888777664 2 33333332 235677777665544
No 292
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.89 E-value=57 Score=30.22 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=11.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC
Q 008265 266 CGICGDYMKSRAIYEDLRSQNV 287 (572)
Q Consensus 266 ~~~~g~~~~a~~~~~~m~~~g~ 287 (572)
.+..|+.+-+..+++.....|.
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHhccccCC
Confidence 3455666665555555444343
No 293
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=26.45 E-value=6.3e+02 Score=27.12 Aligned_cols=101 Identities=11% Similarity=0.067 Sum_probs=56.1
Q ss_pred HHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcc----------hhhhhhhHHHHHHHHHHhhhhhH-HHHHHHHHHH
Q 008265 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE----------LFDGSGFKLLKNECQRLLDSGEV-EMFVGLMEVL 181 (572)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----------~~~~~~~~~l~~~~~~~~~~g~~-~~a~~~~~~~ 181 (572)
......++.-|.+.|.+.+|+.+.-+..+..+-+.. ..+..+...++.++..+....++ .+.+++.-++
T Consensus 145 ~~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~I 224 (963)
T 4ady_A 145 TSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDF 224 (963)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Confidence 344566677778888888888876655444221111 11233444444444433333332 2333333332
Q ss_pred HhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC
Q 008265 182 EEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (572)
Q Consensus 182 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 217 (572)
... .+ ...|..+++.+.+.++.+.+.++|...
T Consensus 225 y~k-~~---~~dy~~a~~~ai~LnD~~li~~if~~l 256 (963)
T 4ady_A 225 LMN-MP---NCDYLTLNKVVVNLNDAGLALQLFKKL 256 (963)
T ss_dssp HHH-SS---SCCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHh-CC---chhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 221 11 124777888888899999999988874
No 294
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=25.72 E-value=98 Score=19.83 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 008265 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQKLG 319 (572)
Q Consensus 290 ~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~ 319 (572)
|..+...++.++.++.+.|...+-+|...+
T Consensus 24 d~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 24 DQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp CHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 444445555555555555555555444333
No 295
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.66 E-value=2.1e+02 Score=24.34 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008265 380 QMALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431 (572)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 431 (572)
+...++|..|...|+--.. ..|......+...|++.+|.++|+.-.+.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4667888888888775443 456777777888899999999999888877777
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.37 E-value=4.5e+02 Score=28.30 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (572)
Q Consensus 197 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 246 (572)
++..|...|..+-|.++....+.+...--.+..+|...|++++|.+.|.+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~k 865 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKT 865 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455555555555555555544434455556666666666666654
No 297
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.31 E-value=2.3e+02 Score=26.77 Aligned_cols=12 Identities=17% Similarity=0.022 Sum_probs=4.9
Q ss_pred hcCCChHHHHHh
Q 008265 202 VNKPDVNLAIRY 213 (572)
Q Consensus 202 ~~~g~~~~a~~~ 213 (572)
+..|+.+-+..+
T Consensus 154 ~~~g~~~~v~~L 165 (437)
T 1n11_A 154 AKYGKVRVAELL 165 (437)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 334444443333
No 298
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.83 E-value=2.7e+02 Score=23.18 Aligned_cols=24 Identities=13% Similarity=-0.003 Sum_probs=13.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC
Q 008265 264 DVCGICGDYMKSRAIYEDLRSQNV 287 (572)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~m~~~g~ 287 (572)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 334556666666666666665553
No 299
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.79 E-value=2.5e+02 Score=25.78 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhcH
Q 008265 515 TTTYNILMKACCTDY 529 (572)
Q Consensus 515 ~~~~~~ll~a~~~~~ 529 (572)
...|..++..|+.+.
T Consensus 272 l~~~~pll~~~~~~~ 286 (339)
T 1ug3_A 272 LKARAKLLQKYLCDE 286 (339)
T ss_dssp HHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHcCCc
Confidence 445888888888654
No 300
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=23.58 E-value=1.4e+02 Score=18.49 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=14.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHH
Q 008265 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311 (572)
Q Consensus 279 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~ 311 (572)
+.+|..-|+.-+.-..+.++....++...|+++
T Consensus 14 l~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~ 46 (52)
T 1q02_A 14 LSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDT 46 (52)
T ss_dssp HHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHcCCCccccHHHHHHHHccCCHHHHHHH
Confidence 334444444433333444444444555444444
No 301
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.13 E-value=3.8e+02 Score=23.41 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=24.4
Q ss_pred HHHHHHhcCCChHHHHHhhhcCCCch-h-HHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 196 RIVQLCVNKPDVNLAIRYACIVPRAD-I-LFCNFVREFGKKRDLVSALRAYDA 246 (572)
Q Consensus 196 ~ll~~~~~~g~~~~a~~~~~~~~~~~-~-~~~~li~~~~~~g~~~~a~~~~~~ 246 (572)
+.+...+..|+.+-+..+++.-+... . .-.+.+...+..|..+-+.-+++.
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 34455555666665555554432211 0 223444455555666555544443
No 302
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.98 E-value=4.5e+02 Score=24.28 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YMKSRAIYEDLRSQNVTLNIYV 293 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~ 293 (572)
....++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+.+++..+...|+-.....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4567788888888888888888887532111 23344455555544433 4567778887877766444333
No 303
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=22.74 E-value=2.8e+02 Score=21.81 Aligned_cols=21 Identities=5% Similarity=0.131 Sum_probs=11.2
Q ss_pred HHHHHccccHHHHHHHHHHHH
Q 008265 370 VKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~ 390 (572)
+..+++.|+.+.+...+..+.
T Consensus 100 lE~~~~~~~~~~~~~~l~~l~ 120 (153)
T 3us6_A 100 FRNFCEEQNIDACRRCLQQVK 120 (153)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444455555555555555554
No 304
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.46 E-value=74 Score=27.54 Aligned_cols=29 Identities=3% Similarity=0.178 Sum_probs=22.8
Q ss_pred HHHhHhhcCChhHHHHHHHHHHhhcCChh
Q 008265 77 MASKLAKDGRLEEFAMIVESVVVSEGNVS 105 (572)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 105 (572)
.+...++.|+.+....+++.+.+.|..++
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 45667788999999999998888776554
No 305
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.96 E-value=2.6e+02 Score=21.18 Aligned_cols=60 Identities=8% Similarity=0.020 Sum_probs=28.4
Q ss_pred HHHHHhcCCChHHHHHhhhcCCCc----hhHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCcH
Q 008265 197 IVQLCVNKPDVNLAIRYACIVPRA----DILFCNFVREFGKKRD--LVSALRAYDASKKHLSSPNM 256 (572)
Q Consensus 197 ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~ 256 (572)
++.-|...|+.++|.+.++.+... ..+...+..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 333344444444444444433211 1344444555554432 45666777777666654443
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.95 E-value=3.3e+02 Score=21.86 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=9.6
Q ss_pred hhhhCChhHHHHHHH
Q 008265 123 SIREGRIDCVVGVLK 137 (572)
Q Consensus 123 ~~~~g~~~~A~~~~~ 137 (572)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 456777776666654
No 307
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=20.67 E-value=64 Score=27.31 Aligned_cols=12 Identities=33% Similarity=0.235 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHH
Q 008265 168 SGEVEMFVGLME 179 (572)
Q Consensus 168 ~g~~~~a~~~~~ 179 (572)
.|+.+....+++
T Consensus 19 ~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 19 YGIYERCRELVE 30 (240)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCChHHHHHHHH
Confidence 466555444433
No 308
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=20.57 E-value=3.1e+02 Score=21.42 Aligned_cols=71 Identities=10% Similarity=-0.014 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccccHHHHHHHHHHHHHCCCC
Q 008265 320 VMADMASYNILLKACCLAGNTV---LAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395 (572)
Q Consensus 320 ~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 395 (572)
-.|+..+--....++.+..+.+ +++.+++++.+ .+ +.+. ...-.|.-++.+.|++++|.+..+.+.+. .
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~---~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--e 107 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---EA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--E 107 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH---HC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--C
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---cC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--C
Confidence 3566766666667777776544 56667777665 22 1122 23445556788888888888888888876 5
Q ss_pred Cc
Q 008265 396 PN 397 (572)
Q Consensus 396 p~ 397 (572)
|+
T Consensus 108 P~ 109 (144)
T 1y8m_A 108 RN 109 (144)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 309
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=20.52 E-value=6.7e+02 Score=25.29 Aligned_cols=57 Identities=12% Similarity=0.059 Sum_probs=29.2
Q ss_pred HHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcC
Q 008265 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (572)
Q Consensus 75 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~ 143 (572)
+.-+..+++.+++...++.+.. .|.. ...-.....+....|+..+|......+-..|
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~------~p~~------~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE------KPGT------TEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS------CCSS------HHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhCCCHHHHHHhccC------CCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 4445666667777666654432 1211 1112223444556677666666666655554
No 310
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.13 E-value=2.4e+02 Score=20.05 Aligned_cols=30 Identities=7% Similarity=-0.037 Sum_probs=11.9
Q ss_pred hHHHHHhhhcCCCch-hHHHHHHHHHHhcCC
Q 008265 207 VNLAIRYACIVPRAD-ILFCNFVREFGKKRD 236 (572)
Q Consensus 207 ~~~a~~~~~~~~~~~-~~~~~li~~~~~~g~ 236 (572)
.+.|.++++.++..+ ..|..++.++...|+
T Consensus 53 ~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHTTSCTTHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHcCc
Confidence 334444444433332 334444444433333
Done!