Query 008266
Match_columns 572
No_of_seqs 793 out of 3246
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 22:08:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-40 5.1E-45 350.2 45.5 442 115-572 81-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.9E-37 6.5E-42 326.5 42.8 423 114-551 113-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-28 1.5E-32 240.6 48.1 381 125-555 6-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.3E-28 1.5E-32 240.7 47.5 365 195-572 6-370 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.5E-30 5.1E-35 263.0 25.0 185 369-553 29-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 5.2E-30 1.8E-34 259.0 25.4 185 299-483 29-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 5E-25 1.7E-29 227.1 37.5 409 117-535 5-478 (514)
8 3fp2_A TPR repeat-containing p 99.9 5.9E-24 2E-28 220.4 36.1 404 117-535 24-491 (537)
9 2y4t_A DNAJ homolog subfamily 99.9 3.4E-23 1.1E-27 209.7 40.2 387 137-561 11-445 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 6.1E-23 2.1E-27 207.8 39.8 301 115-429 23-357 (450)
11 2gw1_A Mitochondrial precursor 99.9 4.7E-22 1.6E-26 204.8 40.0 382 115-506 36-482 (514)
12 3fp2_A TPR repeat-containing p 99.9 1.5E-20 5E-25 194.8 36.2 372 115-500 56-491 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.5E-19 8.7E-24 175.0 40.1 314 117-465 2-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.5E-19 8.6E-24 175.0 40.0 331 187-553 2-352 (359)
15 2xm6_A Protein corresponding t 99.9 2.6E-17 8.8E-22 168.2 52.9 364 138-537 27-434 (490)
16 2ooe_A Cleavage stimulation fa 99.9 1.2E-17 4.3E-22 172.3 47.3 422 115-569 10-491 (530)
17 2xm6_A Protein corresponding t 99.9 6.6E-17 2.3E-21 165.1 52.0 363 173-571 27-433 (490)
18 2ooe_A Cleavage stimulation fa 99.9 2.9E-17 9.9E-22 169.6 47.2 404 96-535 26-492 (530)
19 3hym_B Cell division cycle pro 99.9 7.1E-19 2.4E-23 169.7 33.0 199 116-322 20-219 (330)
20 3hym_B Cell division cycle pro 99.9 1E-18 3.5E-23 168.6 33.1 295 149-453 18-322 (330)
21 1fch_A Peroxisomal targeting s 99.8 9.4E-19 3.2E-23 171.8 26.5 306 237-567 39-356 (368)
22 1fch_A Peroxisomal targeting s 99.8 1.2E-18 4.1E-23 171.0 26.1 304 201-533 38-357 (368)
23 4g1t_A Interferon-induced prot 99.8 2.4E-16 8.3E-21 160.3 36.3 385 151-571 49-460 (472)
24 4eqf_A PEX5-related protein; a 99.8 1E-17 3.5E-22 164.3 24.8 265 117-389 64-350 (365)
25 4eqf_A PEX5-related protein; a 99.8 1.6E-17 5.5E-22 162.9 25.3 277 260-567 64-353 (365)
26 1b89_A Protein (clathrin heavy 99.8 1.5E-17 5.2E-22 160.1 24.1 238 131-413 16-253 (449)
27 4g1t_A Interferon-induced prot 99.8 3.5E-16 1.2E-20 159.0 35.3 387 114-536 47-460 (472)
28 3cv0_A Peroxisome targeting si 99.8 4.7E-17 1.6E-21 156.7 26.4 282 260-569 20-314 (327)
29 3cv0_A Peroxisome targeting si 99.8 3.5E-17 1.2E-21 157.6 25.3 265 117-390 20-310 (327)
30 1b89_A Protein (clathrin heavy 99.8 1.5E-17 5.3E-22 160.1 22.1 268 116-423 30-304 (449)
31 1xi4_A Clathrin heavy chain; a 99.8 2.1E-14 7E-19 154.0 46.9 379 121-562 988-1376(1630)
32 1xi4_A Clathrin heavy chain; a 99.8 4.8E-14 1.6E-18 151.2 46.8 348 116-526 1020-1375(1630)
33 3mkr_A Coatomer subunit epsilo 99.8 4.8E-16 1.6E-20 146.5 28.3 272 271-563 9-287 (291)
34 3mkr_A Coatomer subunit epsilo 99.8 3.8E-16 1.3E-20 147.3 26.7 254 303-572 6-266 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 2.9E-18 1E-22 177.9 11.9 119 401-519 127-249 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 3.4E-18 1.2E-22 177.4 11.0 125 433-557 124-252 (1134)
37 3uq3_A Heat shock protein STI1 99.7 8E-15 2.7E-19 135.7 24.8 226 118-360 5-236 (258)
38 3e4b_A ALGK; tetratricopeptide 99.7 5.7E-15 2E-19 148.5 24.8 347 123-501 8-388 (452)
39 3e4b_A ALGK; tetratricopeptide 99.7 7E-15 2.4E-19 147.9 24.7 378 159-569 9-420 (452)
40 3uq3_A Heat shock protein STI1 99.7 1.5E-14 5.1E-19 133.8 24.9 226 296-535 5-236 (258)
41 2pl2_A Hypothetical conserved 99.7 1.4E-14 4.8E-19 130.3 22.2 198 364-567 3-211 (217)
42 2pl2_A Hypothetical conserved 99.6 1.8E-14 6.2E-19 129.6 21.5 194 155-357 7-211 (217)
43 1ouv_A Conserved hypothetical 99.6 1.1E-12 3.8E-17 122.6 33.3 224 295-536 5-252 (273)
44 2ho1_A Type 4 fimbrial biogene 99.6 1.5E-13 5E-18 126.8 26.7 201 118-325 37-238 (252)
45 3u4t_A TPR repeat-containing p 99.6 5.6E-14 1.9E-18 131.2 23.9 196 121-323 6-206 (272)
46 4e6h_A MRNA 3'-END-processing 99.6 1.1E-11 3.7E-16 128.9 42.9 428 115-551 63-584 (679)
47 2vq2_A PILW, putative fimbrial 99.6 2.1E-13 7.1E-18 123.2 26.2 203 116-325 6-211 (225)
48 4e6h_A MRNA 3'-END-processing 99.6 1.7E-11 5.7E-16 127.5 43.3 433 134-571 48-571 (679)
49 3u4t_A TPR repeat-containing p 99.6 1.9E-13 6.5E-18 127.6 26.4 253 152-412 2-266 (272)
50 2ho1_A Type 4 fimbrial biogene 99.6 2.8E-13 9.6E-18 124.9 26.1 201 331-535 37-238 (252)
51 2h6f_A Protein farnesyltransfe 99.6 2E-13 6.7E-18 133.1 25.6 248 117-376 96-363 (382)
52 1ouv_A Conserved hypothetical 99.6 2.7E-12 9.3E-17 119.9 32.5 225 259-501 4-252 (273)
53 2h6f_A Protein farnesyltransfe 99.6 2.6E-13 8.8E-18 132.3 25.5 249 152-411 96-363 (382)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.8E-14 1.7E-18 131.9 19.4 122 130-253 17-141 (275)
55 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.9E-14 1.7E-18 131.8 19.4 118 202-324 19-139 (275)
56 2vq2_A PILW, putative fimbrial 99.6 7.3E-13 2.5E-17 119.5 26.6 208 330-543 7-217 (225)
57 2q7f_A YRRB protein; TPR, prot 99.6 1E-13 3.5E-18 127.0 20.5 203 115-325 20-222 (243)
58 2q7f_A YRRB protein; TPR, prot 99.6 1.7E-13 5.8E-18 125.5 21.6 201 330-535 22-222 (243)
59 4a1s_A PINS, partner of inscut 99.5 2.8E-13 9.7E-18 134.8 19.7 280 259-570 46-372 (411)
60 3sf4_A G-protein-signaling mod 99.5 3E-13 1E-17 134.2 19.4 278 115-393 6-334 (406)
61 3sf4_A G-protein-signaling mod 99.5 5.1E-13 1.7E-17 132.5 20.4 156 367-522 188-363 (406)
62 4a1s_A PINS, partner of inscut 99.5 5.9E-13 2E-17 132.5 19.9 239 119-393 49-330 (411)
63 3ro2_A PINS homolog, G-protein 99.5 5.4E-13 1.8E-17 128.4 18.5 282 260-570 4-332 (338)
64 3vtx_A MAMA; tetratricopeptide 99.5 4.6E-12 1.6E-16 110.5 22.3 167 365-535 4-170 (184)
65 3ulq_A Response regulator aspa 99.5 3.6E-12 1.2E-16 125.5 23.6 231 337-570 109-368 (383)
66 3vtx_A MAMA; tetratricopeptide 99.5 6.6E-12 2.3E-16 109.5 22.1 165 153-324 5-169 (184)
67 3ro2_A PINS homolog, G-protein 99.5 8.2E-13 2.8E-17 127.1 17.8 204 119-323 6-250 (338)
68 2ond_A Cleavage stimulation fa 99.5 5.8E-11 2E-15 112.9 30.2 236 296-535 8-270 (308)
69 2ond_A Cleavage stimulation fa 99.5 4.5E-11 1.5E-15 113.7 29.1 217 135-360 33-270 (308)
70 3ulq_A Response regulator aspa 99.5 8.6E-12 2.9E-16 122.8 22.8 231 128-358 22-291 (383)
71 4abn_A Tetratricopeptide repea 99.4 5.3E-12 1.8E-16 127.7 19.9 212 133-354 83-315 (474)
72 4abn_A Tetratricopeptide repea 99.4 7.1E-12 2.4E-16 126.8 20.5 211 312-528 84-314 (474)
73 3nf1_A KLC 1, kinesin light ch 99.4 8.1E-12 2.8E-16 118.8 19.4 241 330-571 26-308 (311)
74 3nf1_A KLC 1, kinesin light ch 99.4 8.9E-12 3E-16 118.5 19.3 245 115-360 24-307 (311)
75 3q15_A PSP28, response regulat 99.4 1.1E-10 3.8E-15 114.6 25.6 230 337-570 107-365 (378)
76 3q15_A PSP28, response regulat 99.4 3.6E-10 1.2E-14 110.9 27.7 165 229-394 107-289 (378)
77 1hz4_A MALT regulatory protein 99.4 4.3E-10 1.5E-14 110.1 27.8 301 262-570 15-349 (373)
78 1hz4_A MALT regulatory protein 99.3 1E-09 3.5E-14 107.5 29.5 96 228-323 98-201 (373)
79 3as5_A MAMA; tetratricopeptide 99.3 9.8E-11 3.4E-15 101.7 19.6 161 405-569 12-172 (186)
80 3as5_A MAMA; tetratricopeptide 99.3 1.7E-10 5.6E-15 100.3 20.5 158 159-323 14-171 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.3 8E-11 2.7E-15 123.9 20.2 166 117-289 8-173 (723)
82 4i17_A Hypothetical protein; T 99.3 3.8E-10 1.3E-14 102.0 22.2 196 116-325 5-209 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.3 8.5E-11 2.9E-15 123.7 19.6 168 150-324 6-173 (723)
84 4i17_A Hypothetical protein; T 99.3 4.3E-10 1.5E-14 101.7 21.0 197 151-361 5-210 (228)
85 3edt_B KLC 2, kinesin light ch 99.3 1.1E-10 3.7E-15 109.2 16.6 229 342-571 12-282 (283)
86 3edt_B KLC 2, kinesin light ch 99.2 1.1E-10 3.8E-15 109.1 15.1 230 129-360 12-281 (283)
87 2uy1_A Cleavage stimulation fa 99.2 4.2E-08 1.4E-12 99.0 33.4 124 437-568 287-411 (493)
88 1qqe_A Vesicular transport pro 99.2 9.5E-10 3.3E-14 103.5 17.4 174 311-499 32-227 (292)
89 3mv2_B Coatomer subunit epsilo 99.2 2.1E-08 7.3E-13 92.6 25.3 180 207-395 85-282 (310)
90 2fo7_A Synthetic consensus TPR 99.1 3.9E-09 1.3E-13 85.9 17.9 131 438-571 3-133 (136)
91 3mv2_B Coatomer subunit epsilo 99.1 1.6E-08 5.4E-13 93.4 23.0 249 268-542 20-287 (310)
92 3qky_A Outer membrane assembly 99.1 5.2E-09 1.8E-13 96.7 18.9 102 115-217 12-126 (261)
93 2fo7_A Synthetic consensus TPR 99.1 1.2E-08 4E-13 83.0 17.2 127 156-288 4-130 (136)
94 3qky_A Outer membrane assembly 99.0 1.8E-08 6.2E-13 93.0 20.0 103 152-254 14-128 (261)
95 1qqe_A Vesicular transport pro 99.0 7.1E-09 2.4E-13 97.5 17.4 135 190-324 79-227 (292)
96 2pzi_A Probable serine/threoni 99.0 3E-09 1E-13 112.5 15.9 130 188-324 433-562 (681)
97 3urz_A Uncharacterized protein 99.0 1.2E-08 4.2E-13 90.5 17.4 76 194-274 60-135 (208)
98 3urz_A Uncharacterized protein 99.0 1.7E-08 5.7E-13 89.6 18.0 132 228-368 59-192 (208)
99 2uy1_A Cleavage stimulation fa 99.0 1.6E-06 5.5E-11 87.5 34.0 123 403-533 288-411 (493)
100 3rjv_A Putative SEL1 repeat pr 99.0 7.5E-08 2.5E-12 85.7 21.1 179 135-327 3-199 (212)
101 3qou_A Protein YBBN; thioredox 99.0 1.4E-08 4.8E-13 95.2 16.3 167 150-323 114-282 (287)
102 2r5s_A Uncharacterized protein 99.0 9.7E-09 3.3E-13 88.5 13.8 160 157-323 10-171 (176)
103 2yhc_A BAMD, UPF0169 lipoprote 99.0 8.1E-08 2.8E-12 86.4 20.5 204 117-361 3-214 (225)
104 3qou_A Protein YBBN; thioredox 99.0 2.2E-08 7.4E-13 93.8 17.2 166 400-569 116-283 (287)
105 2r5s_A Uncharacterized protein 98.9 9.2E-09 3.2E-13 88.6 13.2 164 120-289 8-172 (176)
106 2yhc_A BAMD, UPF0169 lipoprote 98.9 5.9E-08 2E-12 87.3 19.1 165 118-325 41-213 (225)
107 4ga2_A E3 SUMO-protein ligase 98.9 3.2E-09 1.1E-13 88.8 9.9 139 130-275 9-148 (150)
108 4ga2_A E3 SUMO-protein ligase 98.9 4E-09 1.4E-13 88.1 10.5 146 159-311 3-149 (150)
109 3rjv_A Putative SEL1 repeat pr 98.9 1.7E-07 5.9E-12 83.3 21.4 176 349-536 4-198 (212)
110 2pzi_A Probable serine/threoni 98.9 9.6E-09 3.3E-13 108.6 15.3 173 342-521 402-583 (681)
111 3dra_A Protein farnesyltransfe 98.9 7.6E-07 2.6E-11 83.1 26.2 217 135-359 50-286 (306)
112 2vsy_A XCC0866; transferase, g 98.9 3.5E-08 1.2E-12 102.4 19.1 154 379-536 2-158 (568)
113 3dra_A Protein farnesyltransfe 98.9 1E-06 3.6E-11 82.1 26.7 219 168-394 48-286 (306)
114 2vsy_A XCC0866; transferase, g 98.9 3.4E-08 1.2E-12 102.5 18.1 154 131-291 2-158 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 5.6E-08 1.9E-12 92.1 16.2 124 339-463 44-182 (307)
116 3u3w_A Transcriptional activat 98.8 6.8E-07 2.3E-11 83.9 22.4 163 407-569 81-265 (293)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.8E-07 6.2E-12 83.1 17.3 89 406-499 11-99 (213)
118 2ifu_A Gamma-SNAP; membrane fu 98.8 2.4E-07 8.1E-12 87.8 18.2 161 197-358 45-222 (307)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.8 6.6E-07 2.3E-11 79.4 19.2 92 157-253 10-101 (213)
120 4gco_A Protein STI-1; structur 98.8 1.7E-07 5.9E-12 75.4 13.6 97 437-535 14-110 (126)
121 2qfc_A PLCR protein; TPR, HTH, 98.7 2.6E-06 8.9E-11 79.9 23.1 166 404-569 78-265 (293)
122 3gyz_A Chaperone protein IPGC; 98.7 3.4E-07 1.2E-11 76.0 15.0 96 438-535 38-133 (151)
123 3u3w_A Transcriptional activat 98.7 3.8E-06 1.3E-10 78.8 24.0 164 193-358 80-264 (293)
124 3q7a_A Farnesyltransferase alp 98.7 9.3E-06 3.2E-10 76.6 25.5 173 131-311 67-257 (349)
125 3q7a_A Farnesyltransferase alp 98.7 1.4E-05 4.7E-10 75.4 25.6 172 167-346 68-257 (349)
126 3gw4_A Uncharacterized protein 98.7 3.4E-07 1.1E-11 80.5 13.8 85 378-463 4-93 (203)
127 4gco_A Protein STI-1; structur 98.7 6.4E-07 2.2E-11 72.0 14.1 93 121-215 16-108 (126)
128 4f3v_A ESX-1 secretion system 98.7 5E-07 1.7E-11 82.3 14.8 189 343-535 18-237 (282)
129 1a17_A Serine/threonine protei 98.6 1.3E-06 4.3E-11 73.9 16.7 127 438-567 15-143 (166)
130 1a17_A Serine/threonine protei 98.6 1.2E-06 4.1E-11 74.0 16.2 95 191-290 16-110 (166)
131 1na0_A Designed protein CTPR3; 98.6 1.1E-06 3.7E-11 70.0 15.1 95 190-289 11-105 (125)
132 2c2l_A CHIP, carboxy terminus 98.6 2.3E-07 8E-12 86.5 12.4 99 117-217 3-101 (281)
133 2qfc_A PLCR protein; TPR, HTH, 98.6 2.3E-06 7.8E-11 80.3 19.3 164 159-322 81-263 (293)
134 2vgx_A Chaperone SYCD; alterna 98.6 1.8E-07 6.1E-12 77.7 10.3 110 423-535 9-118 (148)
135 2c2l_A CHIP, carboxy terminus 98.6 3.1E-07 1E-11 85.6 12.1 96 224-324 5-100 (281)
136 2lni_A Stress-induced-phosphop 98.6 1.2E-06 4.1E-11 70.8 14.4 97 117-215 15-111 (133)
137 1na0_A Designed protein CTPR3; 98.6 1.8E-06 6.1E-11 68.7 15.1 97 118-216 9-105 (125)
138 3gyz_A Chaperone protein IPGC; 98.6 5.8E-07 2E-11 74.6 12.3 94 226-324 39-132 (151)
139 1p5q_A FKBP52, FK506-binding p 98.6 1.1E-06 3.8E-11 84.2 16.1 95 472-568 197-292 (336)
140 3gw4_A Uncharacterized protein 98.6 9E-07 3.1E-11 77.7 13.9 135 224-358 27-174 (203)
141 2lni_A Stress-induced-phosphop 98.6 1.5E-06 5.2E-11 70.1 14.2 96 154-251 17-112 (133)
142 4f3v_A ESX-1 secretion system 98.6 1.5E-06 5E-11 79.3 15.0 126 229-360 108-237 (282)
143 2e2e_A Formate-dependent nitri 98.5 8.1E-07 2.8E-11 76.2 12.5 118 167-290 24-144 (177)
144 3dss_A Geranylgeranyl transfer 98.5 6.6E-05 2.3E-09 70.4 26.1 186 308-499 41-266 (331)
145 2vyi_A SGTA protein; chaperone 98.5 1.2E-06 4.2E-11 70.3 12.7 25 121-145 15-39 (131)
146 2vyi_A SGTA protein; chaperone 98.5 2.3E-06 7.8E-11 68.7 14.3 60 225-288 48-107 (131)
147 2e2e_A Formate-dependent nitri 98.5 1E-06 3.6E-11 75.5 12.5 120 200-325 22-144 (177)
148 1p5q_A FKBP52, FK506-binding p 98.5 2.1E-06 7.3E-11 82.1 15.4 123 153-280 147-283 (336)
149 2vgx_A Chaperone SYCD; alterna 98.5 7.4E-07 2.5E-11 73.9 10.6 97 188-289 21-117 (148)
150 4gcn_A Protein STI-1; structur 98.5 1.6E-06 5.5E-11 69.7 11.8 98 472-570 9-112 (127)
151 2xcb_A PCRH, regulatory protei 98.4 2.3E-06 7.7E-11 70.4 12.4 99 435-535 17-115 (142)
152 2fbn_A 70 kDa peptidylprolyl i 98.4 4E-07 1.4E-11 79.9 8.0 86 224-314 89-174 (198)
153 2fbn_A 70 kDa peptidylprolyl i 98.4 4.9E-07 1.7E-11 79.3 8.3 130 437-568 39-184 (198)
154 3dss_A Geranylgeranyl transfer 98.4 0.00017 5.9E-09 67.6 25.9 173 128-308 39-239 (331)
155 3upv_A Heat shock protein STI1 98.4 5.7E-06 2E-10 66.2 13.6 92 121-214 7-98 (126)
156 2xcb_A PCRH, regulatory protei 98.4 1.7E-06 5.7E-11 71.2 10.5 97 189-290 19-115 (142)
157 4gcn_A Protein STI-1; structur 98.4 4.6E-06 1.6E-10 67.0 12.8 107 437-546 9-121 (127)
158 3sz7_A HSC70 cochaperone (SGT) 98.4 4.3E-06 1.5E-10 70.7 13.1 100 434-535 9-108 (164)
159 3upv_A Heat shock protein STI1 98.4 8.3E-06 2.8E-10 65.3 14.3 92 227-323 8-99 (126)
160 3q49_B STIP1 homology and U bo 98.4 5.5E-06 1.9E-10 67.4 13.4 100 434-535 7-106 (137)
161 1elw_A TPR1-domain of HOP; HOP 98.4 1.2E-05 3.9E-10 63.1 14.7 26 226-251 75-100 (118)
162 1elw_A TPR1-domain of HOP; HOP 98.4 1.4E-05 4.8E-10 62.6 15.2 97 189-290 5-101 (118)
163 1hxi_A PEX5, peroxisome target 98.4 3.5E-06 1.2E-10 67.0 11.5 95 475-571 21-115 (121)
164 2kck_A TPR repeat; tetratricop 98.4 4E-06 1.4E-10 65.1 11.7 98 472-571 7-107 (112)
165 3sz7_A HSC70 cochaperone (SGT) 98.3 7.8E-06 2.7E-10 69.0 13.0 98 117-216 10-107 (164)
166 2kck_A TPR repeat; tetratricop 98.3 8.4E-06 2.9E-10 63.3 12.3 94 226-324 9-105 (112)
167 4b4t_Q 26S proteasome regulato 98.3 4E-05 1.4E-09 76.1 20.2 96 473-568 137-243 (434)
168 1elr_A TPR2A-domain of HOP; HO 98.3 8.3E-06 2.8E-10 65.4 12.2 112 437-551 5-122 (131)
169 3q49_B STIP1 homology and U bo 98.3 1.7E-05 6E-10 64.3 13.9 93 225-322 11-103 (137)
170 2dba_A Smooth muscle cell asso 98.3 3.3E-05 1.1E-09 63.5 15.4 98 187-290 27-128 (148)
171 1elr_A TPR2A-domain of HOP; HO 98.3 1E-05 3.6E-10 64.8 12.1 95 226-324 7-107 (131)
172 2dba_A Smooth muscle cell asso 98.2 4.6E-05 1.6E-09 62.5 15.9 98 435-535 27-128 (148)
173 3ro3_A PINS homolog, G-protein 98.2 5.8E-06 2E-10 69.2 10.5 134 437-570 10-158 (164)
174 2xev_A YBGF; tetratricopeptide 98.2 2.8E-05 9.6E-10 62.2 13.1 99 440-542 6-110 (129)
175 4b4t_Q 26S proteasome regulato 98.2 0.00013 4.3E-09 72.5 20.6 199 125-323 11-243 (434)
176 1hxi_A PEX5, peroxisome target 98.2 1.4E-05 4.7E-10 63.5 10.8 90 194-288 23-112 (121)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.6E-05 8.9E-10 78.1 14.1 132 400-533 267-413 (457)
178 1wao_1 Serine/threonine protei 98.1 7.6E-06 2.6E-10 82.3 9.4 117 446-565 16-134 (477)
179 2hr2_A Hypothetical protein; a 98.1 2.9E-05 9.8E-10 63.8 11.0 93 476-570 16-131 (159)
180 3k9i_A BH0479 protein; putativ 98.1 5.2E-06 1.8E-10 65.5 6.4 87 448-535 2-90 (117)
181 2xev_A YBGF; tetratricopeptide 98.1 9.9E-05 3.4E-09 58.9 14.3 21 126-146 10-30 (129)
182 3rkv_A Putative peptidylprolyl 98.1 2.8E-05 9.5E-10 65.4 11.3 105 435-542 10-131 (162)
183 3ro3_A PINS homolog, G-protein 98.1 2.8E-05 9.4E-10 64.9 10.9 134 190-323 11-156 (164)
184 2if4_A ATFKBP42; FKBP-like, al 98.1 1.2E-05 4.2E-10 76.9 9.6 149 401-571 179-329 (338)
185 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 5.3E-05 1.8E-09 75.8 14.3 88 224-316 318-405 (457)
186 3k9i_A BH0479 protein; putativ 98.0 1.2E-05 4.2E-10 63.3 7.3 83 132-215 4-88 (117)
187 3rkv_A Putative peptidylprolyl 98.0 9.8E-05 3.4E-09 61.9 13.3 65 260-325 62-126 (162)
188 1wao_1 Serine/threonine protei 98.0 1.8E-05 6.2E-10 79.5 9.9 119 196-320 14-134 (477)
189 1ihg_A Cyclophilin 40; ppiase 98.0 8.3E-05 2.8E-09 71.9 13.4 97 190-290 225-336 (370)
190 1ihg_A Cyclophilin 40; ppiase 97.9 0.00013 4.3E-09 70.6 14.2 121 224-350 224-360 (370)
191 1dce_A Protein (RAB geranylger 97.9 0.00046 1.6E-08 70.7 18.5 172 382-558 45-243 (567)
192 1klx_A Cysteine rich protein B 97.9 0.00044 1.5E-08 56.1 14.9 111 415-536 9-127 (138)
193 1dce_A Protein (RAB geranylger 97.9 0.00078 2.7E-08 69.0 19.6 170 134-311 45-241 (567)
194 2hr2_A Hypothetical protein; a 97.8 0.00029 1E-08 57.8 12.5 61 225-289 59-130 (159)
195 2if4_A ATFKBP42; FKBP-like, al 97.8 5.6E-05 1.9E-09 72.2 9.1 94 225-323 232-326 (338)
196 1klx_A Cysteine rich protein B 97.8 0.00097 3.3E-08 54.0 15.3 111 380-501 9-127 (138)
197 2l6j_A TPR repeat-containing p 97.8 3.3E-05 1.1E-09 59.8 5.6 93 470-565 3-102 (111)
198 2kat_A Uncharacterized protein 97.7 0.00014 4.6E-09 56.9 8.7 99 453-553 2-101 (115)
199 3n71_A Histone lysine methyltr 97.7 0.00024 8.1E-09 71.0 12.3 126 198-324 319-463 (490)
200 3n71_A Histone lysine methyltr 97.7 0.00047 1.6E-08 68.9 14.4 61 473-533 353-420 (490)
201 2kat_A Uncharacterized protein 97.6 0.00049 1.7E-08 53.6 10.1 77 242-323 4-80 (115)
202 2l6j_A TPR repeat-containing p 97.6 0.00028 9.6E-09 54.4 8.4 62 225-290 6-67 (111)
203 1na3_A Designed protein CTPR2; 97.6 0.00074 2.5E-08 49.7 10.3 22 193-214 14-35 (91)
204 1na3_A Designed protein CTPR2; 97.6 0.00076 2.6E-08 49.6 10.4 77 225-306 11-87 (91)
205 1zu2_A Mitochondrial import re 97.5 0.00034 1.2E-08 57.3 8.0 96 450-549 16-132 (158)
206 3ma5_A Tetratricopeptide repea 97.4 0.00053 1.8E-08 51.9 8.3 85 470-555 6-91 (100)
207 1zu2_A Mitochondrial import re 97.4 0.00042 1.4E-08 56.7 7.1 38 201-239 15-52 (158)
208 3ma5_A Tetratricopeptide repea 97.3 0.0012 4.2E-08 49.9 8.7 64 435-499 6-69 (100)
209 3ly7_A Transcriptional activat 97.1 0.0073 2.5E-07 56.9 13.1 143 398-545 191-347 (372)
210 3qww_A SET and MYND domain-con 97.0 0.0017 5.9E-08 63.7 8.9 88 448-535 310-411 (433)
211 3ly7_A Transcriptional activat 97.0 0.013 4.5E-07 55.1 14.3 144 362-510 190-347 (372)
212 1pc2_A Mitochondria fission pr 97.0 0.0037 1.3E-07 50.5 9.0 87 451-541 13-104 (152)
213 2kc7_A BFR218_protein; tetratr 96.9 0.0018 6.1E-08 48.6 6.5 57 478-535 7-64 (99)
214 3qwp_A SET and MYND domain-con 96.9 0.0036 1.2E-07 61.5 9.7 94 442-535 293-400 (429)
215 3bee_A Putative YFRE protein; 96.9 0.0087 3E-07 44.3 9.5 66 469-535 4-72 (93)
216 3qww_A SET and MYND domain-con 96.8 0.0067 2.3E-07 59.5 11.2 87 413-499 310-410 (433)
217 3mkq_A Coatomer beta'-subunit; 96.7 0.11 3.9E-06 55.8 21.1 45 234-287 663-707 (814)
218 2kc7_A BFR218_protein; tetratr 96.7 0.0042 1.4E-07 46.5 7.0 55 232-290 9-64 (99)
219 3bee_A Putative YFRE protein; 96.5 0.027 9.2E-07 41.6 10.2 67 221-291 4-73 (93)
220 3qwp_A SET and MYND domain-con 96.5 0.031 1.1E-06 54.8 13.4 92 232-323 296-398 (429)
221 3mkq_A Coatomer beta'-subunit; 96.4 0.16 5.3E-06 54.7 19.3 45 377-427 663-707 (814)
222 2v5f_A Prolyl 4-hydroxylase su 96.3 0.024 8.3E-07 42.9 9.3 71 470-542 4-80 (104)
223 1pc2_A Mitochondria fission pr 96.0 0.11 3.9E-06 41.9 11.8 86 417-506 14-104 (152)
224 1nzn_A CGI-135 protein, fissio 96.0 0.038 1.3E-06 42.9 8.7 84 450-535 15-103 (126)
225 2v5f_A Prolyl 4-hydroxylase su 96.0 0.04 1.4E-06 41.6 8.7 69 116-184 3-77 (104)
226 4h7y_A Dual specificity protei 95.8 0.13 4.5E-06 40.9 11.0 31 261-291 94-124 (161)
227 3mkq_B Coatomer subunit alpha; 95.8 0.36 1.2E-05 40.0 14.1 45 164-214 16-60 (177)
228 1wy6_A Hypothetical protein ST 95.5 0.66 2.2E-05 36.1 14.6 138 130-292 19-156 (172)
229 3u64_A Protein TP_0956; tetrat 95.4 0.16 5.5E-06 45.8 11.4 86 240-327 180-271 (301)
230 4ady_A RPN2, 26S proteasome re 95.3 3.7 0.00013 43.8 31.6 267 268-545 381-665 (963)
231 3lvg_A Clathrin heavy chain 1; 95.3 0.0004 1.4E-08 66.7 -5.8 215 117-350 82-323 (624)
232 3mkq_B Coatomer subunit alpha; 95.2 1.1 3.7E-05 37.1 16.3 100 271-391 15-114 (177)
233 3u64_A Protein TP_0956; tetrat 95.0 0.15 5.1E-06 46.0 10.1 109 117-227 153-281 (301)
234 4h7y_A Dual specificity protei 94.9 0.27 9.3E-06 39.1 10.1 114 435-551 12-138 (161)
235 1wy6_A Hypothetical protein ST 94.8 1.1 3.7E-05 35.0 15.6 139 378-538 19-157 (172)
236 4gns_B Protein CSD3, chitin bi 94.2 0.48 1.6E-05 49.5 13.1 126 159-288 254-398 (754)
237 4ady_A RPN2, 26S proteasome re 94.2 7.1 0.00024 41.7 29.3 260 305-569 383-657 (963)
238 4b4t_P 26S proteasome regulato 94.1 4.8 0.00016 39.4 21.1 50 275-324 30-84 (445)
239 1nzn_A CGI-135 protein, fissio 93.9 0.23 7.9E-06 38.5 7.6 66 151-216 33-102 (126)
240 1y8m_A FIS1; mitochondria, unk 93.5 1.3 4.4E-05 35.0 11.2 72 468-541 36-110 (144)
241 3o48_A Mitochondria fission 1 93.2 0.72 2.5E-05 35.9 9.3 75 466-542 35-112 (134)
242 4b4t_P 26S proteasome regulato 93.0 6.7 0.00023 38.4 18.5 50 345-394 30-84 (445)
243 2ff4_A Probable regulatory pro 92.7 1.9 6.4E-05 41.5 13.9 70 263-333 173-247 (388)
244 3lvg_A Clathrin heavy chain 1; 92.5 2.4E-05 8.2E-10 74.9 -20.0 264 118-421 54-324 (624)
245 4gns_B Protein CSD3, chitin bi 90.5 1.4 4.9E-05 45.9 10.9 54 478-532 344-397 (754)
246 2ff4_A Probable regulatory pro 90.4 2.1 7.1E-05 41.1 11.3 69 475-544 175-248 (388)
247 1v54_E Cytochrome C oxidase po 87.7 6.6 0.00023 28.7 10.0 45 490-534 29-73 (109)
248 4fhn_B Nucleoporin NUP120; pro 87.0 15 0.0005 41.1 16.7 195 157-359 816-1049(1139)
249 4fhn_B Nucleoporin NUP120; pro 86.7 11 0.00037 42.1 15.4 154 191-351 815-991 (1139)
250 3o48_A Mitochondria fission 1 85.8 11 0.00037 29.3 10.4 46 171-216 61-106 (134)
251 1zbp_A Hypothetical protein VP 85.7 5.8 0.0002 35.2 10.0 114 444-570 5-129 (273)
252 1v54_E Cytochrome C oxidase po 85.6 8.7 0.0003 28.1 9.7 62 276-338 25-86 (109)
253 3ffl_A Anaphase-promoting comp 85.6 6.2 0.00021 32.1 9.3 62 120-181 22-91 (167)
254 2y69_E Cytochrome C oxidase su 85.0 11 0.00038 29.2 9.8 58 490-548 72-129 (152)
255 3ffl_A Anaphase-promoting comp 84.7 4 0.00014 33.2 7.8 27 262-288 123-149 (167)
256 2wpv_A GET4, UPF0363 protein Y 83.5 27 0.00092 32.0 19.4 24 120-143 35-58 (312)
257 2y69_E Cytochrome C oxidase su 82.8 15 0.00051 28.6 9.7 62 276-338 68-129 (152)
258 3lpz_A GET4 (YOR164C homolog); 81.4 33 0.0011 31.6 21.9 167 263-463 37-214 (336)
259 4b4t_R RPN7, 26S proteasome re 79.2 7.9 0.00027 37.6 9.4 61 438-498 133-195 (429)
260 3lpz_A GET4 (YOR164C homolog); 78.9 40 0.0014 31.1 22.6 81 259-358 134-214 (336)
261 2p58_C Putative type III secre 78.5 17 0.00058 26.5 8.9 51 162-218 49-99 (116)
262 2uwj_G Type III export protein 78.4 16 0.00056 26.6 8.0 51 162-218 48-98 (115)
263 1y8m_A FIS1; mitochondria, unk 77.7 24 0.00082 27.8 13.1 70 185-254 36-108 (144)
264 4b4t_R RPN7, 26S proteasome re 77.0 23 0.00079 34.3 12.0 98 154-251 132-236 (429)
265 3esl_A Checkpoint serine/threo 76.7 23 0.00079 29.8 10.0 57 236-294 92-148 (202)
266 2wpv_A GET4, UPF0363 protein Y 76.0 47 0.0016 30.3 22.7 168 156-358 36-215 (312)
267 3esl_A Checkpoint serine/threo 75.0 24 0.00081 29.7 9.6 53 452-504 95-148 (202)
268 1zbp_A Hypothetical protein VP 68.3 65 0.0022 28.6 15.4 55 232-290 6-60 (273)
269 2qx5_A Nucleoporin NIC96; mRNA 67.6 1.2E+02 0.0039 31.3 15.7 16 552-567 549-564 (661)
270 4b4t_S RPN3, 26S proteasome re 67.2 33 0.0011 33.8 10.2 61 154-216 232-298 (523)
271 3txn_A 26S proteasome regulato 65.5 95 0.0032 29.5 23.1 95 228-322 104-207 (394)
272 4a1g_A Mitotic checkpoint seri 65.4 51 0.0017 26.3 9.6 53 240-294 82-134 (152)
273 4a1g_A Mitotic checkpoint seri 63.3 53 0.0018 26.2 9.0 51 489-539 83-134 (152)
274 2uwj_G Type III export protein 62.2 43 0.0015 24.4 7.8 7 236-242 52-58 (115)
275 2p58_C Putative type III secre 61.4 45 0.0015 24.4 8.6 8 236-243 53-60 (116)
276 2wvi_A Mitotic checkpoint seri 58.9 71 0.0024 25.9 9.2 52 490-541 79-131 (164)
277 2wvi_A Mitotic checkpoint seri 57.6 75 0.0026 25.7 9.8 54 240-295 77-130 (164)
278 3eiq_C Programmed cell death p 57.0 1.3E+02 0.0043 28.1 13.1 26 121-146 57-82 (358)
279 1qsa_A Protein (soluble lytic 56.3 1.8E+02 0.0061 29.6 37.1 141 121-276 10-151 (618)
280 2d2s_A Exocyst complex compone 55.3 66 0.0022 28.0 9.1 90 442-534 24-119 (235)
281 1k1a_A B-cell lymphoma 3-encod 52.9 28 0.00095 30.0 6.6 48 125-172 13-62 (241)
282 4aez_C MAD3, mitotic spindle c 47.0 48 0.0017 28.4 6.6 53 240-294 131-183 (223)
283 3kea_A K1L; tropism, ANK repea 47.0 58 0.002 29.1 7.9 19 268-286 165-183 (285)
284 1wdy_A 2-5A-dependent ribonucl 46.7 44 0.0015 29.4 7.1 11 125-135 9-19 (285)
285 2d2s_A Exocyst complex compone 44.9 1.5E+02 0.0053 25.6 9.9 30 364-393 89-118 (235)
286 3ltm_A Alpha-REP4; protein eng 44.4 1.4E+02 0.0047 24.9 19.5 153 116-288 31-183 (211)
287 2zu6_B Programmed cell death p 43.6 65 0.0022 29.4 7.4 25 121-145 6-30 (307)
288 3eu9_A Huntingtin-interacting 43.2 27 0.00091 30.0 4.9 13 160-172 46-58 (240)
289 4g8k_A 2-5A-dependent ribonucl 42.0 1.9E+02 0.0066 26.2 11.0 17 124-140 28-44 (337)
290 1n11_A Ankyrin; clathrin, BAND 41.2 76 0.0026 30.4 8.3 47 304-354 184-232 (437)
291 4g8k_A 2-5A-dependent ribonucl 41.1 1.6E+02 0.0056 26.7 10.3 12 529-540 317-328 (337)
292 2ijq_A Hypothetical protein; s 40.9 1.3E+02 0.0046 24.2 8.0 51 484-534 45-103 (161)
293 4aez_C MAD3, mitotic spindle c 40.3 51 0.0018 28.2 5.8 51 489-539 132-183 (223)
294 3pvs_A Replication-associated 38.3 2.8E+02 0.0096 26.7 13.0 137 381-537 166-326 (447)
295 1k1a_A B-cell lymphoma 3-encod 38.2 1.4E+02 0.0047 25.3 8.8 23 161-183 14-36 (241)
296 2r9g_A AAA ATPase, central reg 37.8 1.8E+02 0.0062 24.4 9.9 92 442-534 17-116 (204)
297 1wdy_A 2-5A-dependent ribonucl 37.3 88 0.003 27.4 7.6 10 163-172 12-21 (285)
298 3hra_A Ankyrin repeat family p 37.3 50 0.0017 27.3 5.6 13 317-329 159-171 (201)
299 2fe3_A Peroxide operon regulat 36.6 1.5E+02 0.0052 23.2 7.9 58 144-202 13-70 (145)
300 3eu9_A Huntingtin-interacting 36.4 75 0.0026 26.9 6.8 6 307-312 117-122 (240)
301 3kea_A K1L; tropism, ANK repea 36.4 94 0.0032 27.7 7.6 16 340-355 167-182 (285)
302 3jxi_A Vanilloid receptor-rela 35.2 62 0.0021 28.2 6.1 54 196-249 10-72 (260)
303 2fu4_A Ferric uptake regulatio 34.1 1.1E+02 0.0038 20.9 6.4 59 497-556 8-67 (83)
304 3eyy_A Putative iron uptake re 33.3 1.3E+02 0.0044 23.6 6.9 57 144-202 10-66 (145)
305 3bge_A Predicted ATPase; struc 33.0 2.2E+02 0.0074 23.8 8.8 19 415-433 21-39 (201)
306 2ijq_A Hypothetical protein; s 32.5 2E+02 0.0067 23.2 8.3 52 165-216 44-103 (161)
307 3ubw_A 14-3-3E, 14-3-3 protein 31.7 2.7E+02 0.0091 24.5 11.6 48 522-569 172-227 (261)
308 1mzb_A Ferric uptake regulatio 31.3 1.5E+02 0.0052 22.8 7.0 43 160-202 24-67 (136)
309 3jxi_A Vanilloid receptor-rela 31.3 29 0.00099 30.4 3.1 55 125-179 9-72 (260)
310 3pvs_A Replication-associated 30.9 3.7E+02 0.013 25.9 13.1 141 346-502 166-326 (447)
311 2xig_A Ferric uptake regulatio 30.2 1.7E+02 0.0057 23.1 7.2 44 159-202 32-75 (150)
312 4gq2_M Nucleoporin NUP120; bet 29.9 2.9E+02 0.0099 29.9 11.1 48 508-555 899-950 (950)
313 3eiq_C Programmed cell death p 29.6 3.5E+02 0.012 25.2 14.3 64 404-468 220-285 (358)
314 2zu6_B Programmed cell death p 29.5 3.2E+02 0.011 24.7 12.1 59 263-323 5-65 (307)
315 3ctd_A Putative ATPase, AAA fa 29.1 2.6E+02 0.0089 23.6 9.4 32 450-481 49-80 (213)
316 2keb_A DNA polymerase subunit 28.1 1.7E+02 0.0058 21.1 6.3 31 490-520 28-58 (101)
317 2w57_A Ferric uptake regulatio 27.2 1.7E+02 0.0058 23.1 6.7 35 168-202 32-66 (150)
318 2fe3_A Peroxide operon regulat 27.0 2.3E+02 0.0077 22.1 7.5 58 392-450 13-70 (145)
319 3iqu_A 14-3-3 protein sigma; s 26.6 3.1E+02 0.011 23.7 9.4 48 522-569 149-204 (236)
320 3ltj_A Alpharep-4; protein eng 26.0 2.7E+02 0.0092 22.7 19.6 175 115-312 25-199 (201)
321 3txn_A 26S proteasome regulato 25.9 4.3E+02 0.015 25.0 27.7 216 301-536 104-344 (394)
322 2br9_A 14-3-3E, 14-3-3 protein 25.9 3.2E+02 0.011 23.6 10.0 48 522-569 146-201 (234)
323 4gq2_M Nucleoporin NUP120; bet 25.8 6.5E+02 0.022 27.1 13.0 51 225-275 899-950 (950)
324 3bu8_A Telomeric repeat-bindin 25.7 3.1E+02 0.011 23.3 10.8 100 472-572 18-145 (235)
325 1ug3_A EIF4GI, eukaryotic prot 25.7 1.9E+02 0.0064 26.7 7.6 25 121-145 14-38 (339)
326 3t8k_A Uncharacterized protein 25.3 2.3E+02 0.0079 23.1 7.6 12 281-292 94-105 (186)
327 2ion_A PDCD4, programmed cell 25.3 2.6E+02 0.0087 22.2 8.3 21 407-427 15-35 (152)
328 4ets_A Ferric uptake regulatio 25.2 1.3E+02 0.0044 24.2 5.7 57 146-203 26-84 (162)
329 3uzd_A 14-3-3 protein gamma; s 24.9 3.5E+02 0.012 23.6 10.1 48 522-569 147-202 (248)
330 3hra_A Ankyrin repeat family p 24.8 1E+02 0.0034 25.3 5.3 10 342-351 80-89 (201)
331 1mzb_A Ferric uptake regulatio 24.2 2.4E+02 0.0081 21.7 6.9 58 392-450 9-67 (136)
332 2fu4_A Ferric uptake regulatio 24.1 1.7E+02 0.0059 19.8 6.5 28 171-198 35-62 (83)
333 2xig_A Ferric uptake regulatio 24.1 2.6E+02 0.009 21.9 7.6 58 392-450 18-75 (150)
334 4b4t_S RPN3, 26S proteasome re 23.9 5.3E+02 0.018 25.4 12.1 70 185-254 228-301 (523)
335 2ion_A PDCD4, programmed cell 23.9 2.7E+02 0.0093 22.0 8.7 65 263-328 11-77 (152)
336 3lxu_X Tripeptidyl-peptidase 2 23.4 4E+02 0.014 29.9 10.4 78 487-567 1265-1342(1354)
337 2w57_A Ferric uptake regulatio 23.0 2.5E+02 0.0086 22.1 6.9 59 392-451 8-67 (150)
338 3f3f_C Nucleoporin NUP85; stru 22.8 2.6E+02 0.0089 27.9 8.1 29 187-215 515-543 (570)
339 1n11_A Ankyrin; clathrin, BAND 22.8 4.8E+02 0.016 24.5 11.0 228 94-353 23-264 (437)
340 1wty_A Hypothetical protein TT 22.7 2.4E+02 0.0082 21.1 6.5 77 451-534 3-80 (119)
341 2nsz_A Programmed cell death p 22.7 2.6E+02 0.0089 21.3 9.6 22 406-427 12-33 (129)
342 3eyy_A Putative iron uptake re 22.6 2.1E+02 0.0071 22.4 6.3 34 417-450 33-66 (145)
343 4ets_A Ferric uptake regulatio 22.3 1.7E+02 0.0057 23.5 5.8 44 337-380 38-83 (162)
344 2o03_A Probable zinc uptake re 22.1 1.6E+02 0.0054 22.5 5.4 16 169-184 26-41 (131)
345 4b4t_O 26S proteasome regulato 22.0 5E+02 0.017 24.4 10.7 56 443-498 83-154 (393)
346 1bpo_A Protein (clathrin); cla 21.9 4.8E+02 0.017 25.3 9.5 135 210-357 348-482 (494)
347 1wgl_A TOLL-interacting protei 21.8 68 0.0023 20.7 2.6 48 170-222 10-57 (59)
348 3ltm_A Alpha-REP4; protein eng 21.5 3.4E+02 0.012 22.3 20.0 142 151-311 31-172 (211)
349 3b7b_A Euchromatic histone-lys 21.5 1.3E+02 0.0043 25.6 5.4 16 378-393 219-234 (237)
350 2keb_A DNA polymerase subunit 21.2 2.1E+02 0.007 20.7 5.1 43 524-568 27-69 (101)
351 3t8k_A Uncharacterized protein 20.9 3.4E+02 0.012 22.0 8.7 30 194-223 41-70 (186)
352 2nsz_A Programmed cell death p 20.8 2.8E+02 0.0097 21.1 10.0 65 263-328 9-75 (129)
353 2cwy_A Hypothetical protein TT 20.7 1.8E+02 0.0061 20.9 5.0 51 482-534 12-67 (94)
354 3aji_A 26S proteasome non-ATPa 20.4 2.5E+02 0.0086 23.4 7.2 13 129-141 14-26 (231)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-40 Score=350.24 Aligned_cols=442 Identities=12% Similarity=0.040 Sum_probs=391.9
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008266 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.+++..|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+++... .++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 367889999999999999999999999999864 578899999999999999999999999998653 4788999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC---------------CCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCc
Q 008266 195 ITGYCRVNELDKALHLFSTMANN---------------GIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATS 259 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 259 (572)
+.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++++.++ .
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~ 232 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA----K 232 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----T
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----h
Confidence 99999999999999999953221 2244688999999999999999999999999998765 4
Q ss_pred cHHHHHHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008266 260 DVITSTIL--------------------------------------MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNV 301 (572)
Q Consensus 260 ~~~~~~~l--------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 301 (572)
+...+..+ +..|.+.|++++|.++|+++.+. +++..+|+.
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLC 310 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHH
Confidence 44443333 55667889999999999999876 689999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 008266 302 LINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGD 381 (572)
Q Consensus 302 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 381 (572)
++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+. .+.+..+++.++..|.+.|+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999875 347788999999999999999999999999875 35578999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008266 382 IVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKE 461 (572)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 461 (572)
+++|.++|+++.+.... +..+|+.++.+|.+.|++++|..+|+++.+.++ .+..+|+.++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999886543 788999999999999999999999999988654 4789999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008266 462 MLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR----GITPD--IITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 462 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+.+... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.
T Consensus 467 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 998643 37899999999999999999999999999875 66787 789999999999999999999999999987
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008266 536 GLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 536 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
+ +.+..+|..++..|.+.|++++|.+.|+++++.++
T Consensus 546 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 546 S-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 4 44788999999999999999999999999987653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-37 Score=326.49 Aligned_cols=423 Identities=12% Similarity=0.053 Sum_probs=369.5
Q ss_pred CCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCC----------
Q 008266 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR---------- 183 (572)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------- 183 (572)
..|+..++..++..|.+.|++++|..+|+.+... +++..+++.++.+|.+.|++++|.++|+++....
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 4578889999999999999999999999998654 6789999999999999999999999998643221
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH-----------------------------
Q 008266 184 -----PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNIL----------------------------- 229 (572)
Q Consensus 184 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----------------------------- 229 (572)
..++..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 1236889999999999999999999999999886422 33333332
Q ss_pred ---------HHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008266 230 ---------VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYN 300 (572)
Q Consensus 230 ---------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 300 (572)
+..|.+.|++++|.++|+++.+. + ++..+++.++.+|.+.|++++|+++|+++.+.+ +.+..+++
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 343 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-E----KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYP 343 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-G----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-C----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHH
Confidence 44566788999999999998765 2 889999999999999999999999999999876 55888999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 008266 301 VLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG 380 (572)
Q Consensus 301 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 380 (572)
.++.++.+.|++++|.++++++.+. .+.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999865 35578899999999999999999999999998853 446889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008266 381 DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKK 460 (572)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (572)
++++|+++|+++.+.+.. +..+|..++.+|.+.|++++|..+|+++.+..+ .+..+|+.++..|.+.|++++|.++|+
T Consensus 422 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp CHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999987654 788999999999999999999999999988654 378999999999999999999999999
Q ss_pred HHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008266 461 EMLLD----GIFPD--VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 461 ~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99876 66787 7899999999999999999999999999864 56889999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHH
Q 008266 535 LGLAIDHIPFRILKKRY 551 (572)
Q Consensus 535 ~g~~p~~~~~~~l~~~~ 551 (572)
.. +.+...+..+...|
T Consensus 579 ~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 579 IS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HC-TTCHHHHHHHHHTT
T ss_pred cC-CCChHHHHHHHHHH
Confidence 73 22556666666554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=4.5e-28 Score=240.60 Aligned_cols=381 Identities=15% Similarity=0.049 Sum_probs=215.9
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008266 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL 204 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 204 (572)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+..| .+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 345566677777777777666542 33445555566666667777777777766666554 4566677777777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 008266 205 DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALW 284 (572)
Q Consensus 205 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 284 (572)
++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++++..+ .+...+..+...+...|++++|.+.|
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP----DLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT----TCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 77777777766542 22344566666667777777777777777666554 45556666666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008266 285 NDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAP 364 (572)
Q Consensus 285 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 364 (572)
+++.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..... +.
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 6666553 3345566666666666666666666666665542 1234445555555555555555555555554431 12
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008266 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALIL 444 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 444 (572)
+..++..+...+.+.|++++|.+.++++.+.++. +..+|..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------------------------------~~~~~~~l~~ 279 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------------------------------------FPDAYCNLAN 279 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------------------------------------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------------------------------CHHHHHHHHH
Confidence 3444455555555555555555555555443322 3344444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008266 445 AETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKE 524 (572)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 524 (572)
.+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+..++..++.+|.+.|++++
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555554432 224455555555555555555555555555543 13334555555555555566666
Q ss_pred HHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcC
Q 008266 525 AEEVFAKIQTLGLAI-DHIPFRILKKRYRRMK 555 (572)
Q Consensus 525 A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 555 (572)
|.+.++++.+. .| +...|..+...+...|
T Consensus 358 A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 358 ALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 66665555543 23 3344555555554443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=4.3e-28 Score=240.70 Aligned_cols=365 Identities=14% Similarity=0.048 Sum_probs=287.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008266 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++..++..+ .+..+|..+...|.+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p----~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP----LLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CchHHHHHHHHHHHHC
Confidence 345556777777777777766542 22344555566667777777777777777777554 6677777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 008266 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFY 354 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 354 (572)
|++++|++.|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|
T Consensus 81 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 77777777777777653 4455667777777777888888888887777652 223445566667777778888888888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008266 355 GVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS 434 (572)
Q Consensus 355 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 434 (572)
+.+.+.. +.+..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++..+..+.
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN- 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-
Confidence 8777752 335677888888888888888888888888876544 6778888899999999999999999988875432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008266 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
+..++..+...+...|++++|.+.++++.+.+.. +..+|..+...+.+.|++++|...|+++.+.. +.+..+|..++.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 6788999999999999999999999999986432 57889999999999999999999999999863 678899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008266 515 GHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
.+...|++++|.+.++++.+.. +.+..++..++..|.+.|++++|.+.|+++++.++
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999862 34577899999999999999999999999987653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.5e-30 Score=262.95 Aligned_cols=185 Identities=18% Similarity=0.219 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCCHHHH
Q 008266 369 YKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGD---------LSNAFSIRDLMLSFGVSSNVFTF 439 (572)
Q Consensus 369 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~~~~p~~~~~ 439 (572)
++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444444444444444444444444444444444444444444443332 45556666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008266 440 NALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCAR 519 (572)
Q Consensus 440 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 519 (572)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++|+.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 008266 520 GNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRR 553 (572)
Q Consensus 520 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 553 (572)
|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666555554
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5.2e-30 Score=258.97 Aligned_cols=185 Identities=14% Similarity=0.137 Sum_probs=104.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC---------HHHHHHHHHHHHhCCCCCCHhhH
Q 008266 299 YNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGK---------LDEASHFYGVLSKTGVAPDQISY 369 (572)
Q Consensus 299 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~~ 369 (572)
++.+|++|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. +++|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555555555555555555555555555555555555555544332 34555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008266 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRG 449 (572)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 449 (572)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008266 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN 483 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 483 (572)
|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555543
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5e-25 Score=227.11 Aligned_cols=409 Identities=11% Similarity=-0.038 Sum_probs=307.4
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008266 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+...|..+...+.+.|++++|+..|+++++.. |+..++..+..++.+.|++++|...++++.+..| .+..+|..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHH
Confidence 34567888899999999999999999999875 7999999999999999999999999999999876 47789999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHH--------------------------
Q 008266 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVL-------------------------- 250 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------------------------- 250 (572)
++.+.|++++|...|+++...+ +++......++..+........+.+.+..+.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999999875 3344444444444443322222222221110
Q ss_pred --------hCCCCCC-------CccHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHH
Q 008266 251 --------ADDDGKA-------TSDVITSTILMDSYFK---NGDKFQALALWNDMFQ-----KNI--------QTDIVAY 299 (572)
Q Consensus 251 --------~~~~~~~-------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~ 299 (572)
....... +.+...+......+.. .|++++|+..|+++.+ ... +.+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 0000000 1124555555555554 7888888888888887 311 2235667
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 008266 300 NVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH 379 (572)
Q Consensus 300 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 379 (572)
..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 778888888888888888888888764 337777888888888888888888888887753 34567788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008266 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLK 459 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 459 (572)
|++++|...++++.+.... +...+..+...+...|++++|...++.+.+... .+..++..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888888876544 566788888888888888888888888877533 25667888888888888888888888
Q ss_pred HHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008266 460 KEMLLDGIF-PD----VFTYNLLIGASCN---LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAK 531 (572)
Q Consensus 460 ~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (572)
+++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...|...|++++|.+.+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 887764211 11 3377788888888 888888888888888753 45667788888888888888888888888
Q ss_pred HHHc
Q 008266 532 IQTL 535 (572)
Q Consensus 532 m~~~ 535 (572)
+.+.
T Consensus 475 a~~~ 478 (514)
T 2gw1_A 475 SADL 478 (514)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8886
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=5.9e-24 Score=220.44 Aligned_cols=404 Identities=13% Similarity=0.033 Sum_probs=213.6
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008266 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
....|..+...+.+.|++++|+..|+++++.. +.++.++..+..+|.+.|++++|++.++++.+..| .+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 34578889999999999999999999999874 55788999999999999999999999999999876 47889999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC-
Q 008266 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG- 275 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 275 (572)
++...|++++|...|+.+ .. .|+.. ...+..+...+...+|...++.++...+... +........+..+....
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRG-SQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC--------CCCCCHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-ccccchHhHHHHHHHhcC
Confidence 999999999999999744 22 23322 2223344555566788888888876422100 00001112222233333
Q ss_pred -----------------------------------------CHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHH
Q 008266 276 -----------------------------------------DKFQALALWNDMFQKNIQTDI-------VAYNVLINGFC 307 (572)
Q Consensus 276 -----------------------------------------~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~ 307 (572)
++++|..+++++.+.. +.+. .++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHH
Confidence 3444444444444432 1111 12333334444
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 008266 308 LNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKARE 387 (572)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 387 (572)
..|++++|...++++.+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 445555555555554443 2334444444444445555555555555444432 2234444444445555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008266 388 FLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGI 467 (572)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 467 (572)
.++++.+..+. +...+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...++++.+...
T Consensus 332 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 55554443322 334444444455555555555555554444321 1333444444445555555555555544443210
Q ss_pred -----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008266 468 -----FPDVFTYNLLIGASCNL----------GHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKI 532 (572)
Q Consensus 468 -----~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 532 (572)
......+..+...+... |++++|...|+++.+.. +.+..++..+..+|...|++++|.+.|+++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 00111122223334444 45555555555544431 233344444555555555555555555554
Q ss_pred HHc
Q 008266 533 QTL 535 (572)
Q Consensus 533 ~~~ 535 (572)
.+.
T Consensus 489 l~~ 491 (537)
T 3fp2_A 489 AIL 491 (537)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3.4e-23 Score=209.70 Aligned_cols=387 Identities=16% Similarity=0.080 Sum_probs=214.2
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 008266 137 ALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 137 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (572)
+...+.++.... +.+...+..++..+.+.|++++|..+|+++.+..| .+..+|..+..++...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444331 34556666667777777777777777777666544 3566666677777777777777777777666
Q ss_pred CCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008266 217 NGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDV---ITSTILMDSYFKNGDKFQALALWNDMFQKNIQ 293 (572)
Q Consensus 217 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 293 (572)
.+ +.+..++..+..++.+.|++++|.+.|++++...+ .+. ..+..++..+...
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~------------------- 144 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP----SENEEKEAQSQLIKSDEMQ------------------- 144 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC----CHHHHHHHHHHHHHHHHHH-------------------
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHHH-------------------
Confidence 53 22455666666677777777777777777766554 444 5555554331000
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 008266 294 TDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTII 373 (572)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 373 (572)
.+..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...++.+.+.. +.+..++..+.
T Consensus 145 ----~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 218 (450)
T 2y4t_A 145 ----RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIS 218 (450)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 01111223444455555555555544431 2234444455555555555555555555544431 22444555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC----HH
Q 008266 374 QGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVI------------IDGYGRCGDLSNAFSIRDLMLSFGVSSN----VF 437 (572)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~ 437 (572)
..|...|++++|...++++.+..+. +...+..+ ...+...|++++|...|+.+.+..+. + ..
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~ 296 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVR 296 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHH
Confidence 5555555555555555555443222 22223222 66667777777777777777664321 2 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--
Q 008266 438 TFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKG-- 515 (572)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-- 515 (572)
.+..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++.+.. +-+...+..+..+
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 56666777777777777777777776542 2246677777777777777777777777777642 2334555555522
Q ss_pred ----------HHhcC-----CHHHHHHHHHH-HHHcCCCCC----h-------HHHHHHHHHHHhcCCHHHHH
Q 008266 516 ----------HCARG-----NMKEAEEVFAK-IQTLGLAID----H-------IPFRILKKRYRRMKESDKAR 561 (572)
Q Consensus 516 ----------~~~~g-----~~~~A~~~~~~-m~~~g~~p~----~-------~~~~~l~~~~~~~g~~~~A~ 561 (572)
|...| +.+++.+.+++ ..+. .|| . ..+..+..+|...|+.+++.
T Consensus 375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33333 56677888876 3333 232 1 25667777777777766544
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=6.1e-23 Score=207.81 Aligned_cols=301 Identities=15% Similarity=0.123 Sum_probs=218.3
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008266 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+.++..|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+++.+.+| .+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 4577889999999999999999999999999863 55788999999999999999999999999999876 468899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCC-H---hHHHHH------------HHHHHhCCChhHHHHHHHHHHhCCCCCCC
Q 008266 195 ITGYCRVNELDKALHLFSTMANNGIRPN-R---VTHNIL------------VHALCKKGLLGDAVKFLGEVLADDDGKAT 258 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 258 (572)
..+|.+.|++++|.+.|+++.+. .|+ . ..+..+ ...+...|++++|...|++++...+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---- 174 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV---- 174 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Confidence 99999999999999999999875 344 3 455555 3447778888888888888887665
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HhHHHHH
Q 008266 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTL 337 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 337 (572)
.+..++..++.+|.+.|++++|++.|+++.+.. +.+..+|..+...|...|++++|+..|+++.+. .|+ ...+..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~ 251 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHY 251 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 677788888888888888888888888887654 456778888888888888888888888888765 333 3333333
Q ss_pred ------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008266 338 ------------LNCLCKQGKLDEASHFYGVLSKTGVAPD-----QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPE 400 (572)
Q Consensus 338 ------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 400 (572)
...+.+.|++++|...|+.+.+. .|+ ...+..+...+.+.|++++|+..++++.+..+. +
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~ 328 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-N 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-c
Confidence 45555555555555555555543 222 224455555555555555555555555543221 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008266 401 PHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (572)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 429 (572)
...|..+..+|...|++++|...++++.+
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45555555555555555555555555554
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.7e-22 Score=204.85 Aligned_cols=382 Identities=11% Similarity=0.004 Sum_probs=304.4
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008266 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.||..+|..+...+.+.|++++|...++++++.+ +.+..++..+..++.+.|++++|...|+++.+.++ ++......+
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 113 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPM 113 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHH
Confidence 3688999999999999999999999999999874 55678999999999999999999999999999876 344444444
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCC-------------------CCCC-------------------------HhHHHHHH
Q 008266 195 ITGYCRVNELDKALHLFSTMANNG-------------------IRPN-------------------------RVTHNILV 230 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g-------------------~~p~-------------------------~~~~~~ll 230 (572)
+..+........+.+.+..+...+ ..|+ ...+....
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (514)
T 2gw1_A 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG 193 (514)
T ss_dssp HHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH
Confidence 444444333333333332111110 0111 33344444
Q ss_pred HHHHh---CCChhHHHHHHHHHHh-----C--CCCC---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008266 231 HALCK---KGLLGDAVKFLGEVLA-----D--DDGK---ATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIV 297 (572)
Q Consensus 231 ~~~~~---~g~~~~a~~~~~~~~~-----~--~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 297 (572)
..+.. .|++++|...+++++. . .+.. .+.+..++..++..+...|++++|...|+++.+.. |+..
T Consensus 194 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~ 271 (514)
T 2gw1_A 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVN 271 (514)
T ss_dssp HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHH
Confidence 44554 8999999999999999 6 3211 02457789999999999999999999999999875 3388
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 008266 298 AYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC 377 (572)
Q Consensus 298 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 377 (572)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHH
Confidence 89999999999999999999999998763 3466788899999999999999999999998864 346778899999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---c
Q 008266 378 IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVS-SN----VFTFNALILAETR---G 449 (572)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~ll~~~~~---~ 449 (572)
..|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.... ++ ...+..+...+.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999986544 6778999999999999999999999998764322 12 3488999999999 9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008266 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI 506 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 506 (572)
|++++|...++++.+... .+...+..+...+.+.|++++|...|+++.+. .|+.
T Consensus 429 ~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp THHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred CCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 999999999999988642 25788899999999999999999999999985 4554
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.5e-20 Score=194.81 Aligned_cols=372 Identities=11% Similarity=0.051 Sum_probs=290.5
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008266 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+.++.+|..+...|.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...|+ .....+.+. ...
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~----~~~ 129 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD----GAS 129 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------------
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC----hHH
Confidence 3578899999999999999999999999999874 5578899999999999999999999997 444333222 223
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC------CCCCCHhH------------------------------HHHHHHHHHhC--
Q 008266 195 ITGYCRVNELDKALHLFSTMANN------GIRPNRVT------------------------------HNILVHALCKK-- 236 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~------------------------------~~~ll~~~~~~-- 236 (572)
+..+...+...+|...++.+... ...|+... ...+...+...
T Consensus 130 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 209 (537)
T 3fp2_A 130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE 209 (537)
T ss_dssp --CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhh
Confidence 44555566667888888888543 11222222 12222222222
Q ss_pred ------CChhHHHHHHHHHHhCCCCCCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008266 237 ------GLLGDAVKFLGEVLADDDGKATSD-----VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (572)
Q Consensus 237 ------g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 305 (572)
|++++|..+++++++..+.. ++ ..++..+...+...|++++|.+.|+++.+. .|+...+..+...
T Consensus 210 ~~~~a~~~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 285 (537)
T 3fp2_A 210 GYLVANDLLTKSTDMYHSLLSANTVD--DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALT 285 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCC--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCCc--chhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHH
Confidence 37889999999999987622 21 335777888899999999999999999987 4568889999999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 008266 306 FCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKA 385 (572)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 385 (572)
+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998863 3467889999999999999999999999998864 33567899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhc----------C
Q 008266 386 REFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV-----SSNVFTFNALILAETRG----------G 450 (572)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~ll~~~~~~----------g 450 (572)
...++++.+..+. +...+..+...+...|++++|...++.+.+... ......+..+...+... |
T Consensus 364 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 364 EAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 9999999987544 677899999999999999999999999876421 11223345556677777 9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008266 451 SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR 500 (572)
Q Consensus 451 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (572)
++++|...++++.+... .+...+..+...+...|++++|...|+++.+.
T Consensus 443 ~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 443 KFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999998643 35788999999999999999999999999985
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.5e-19 Score=174.98 Aligned_cols=314 Identities=13% Similarity=0.073 Sum_probs=205.1
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008266 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
|+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+..| .+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 45678888899999999999999999988863 45678888899999999999999999999988765 36788889999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCC----CHhHHHHH------------HHHHHhCCChhHHHHHHHHHHhCCCCCCCcc
Q 008266 197 GYCRVNELDKALHLFSTMANNGIRP----NRVTHNIL------------VHALCKKGLLGDAVKFLGEVLADDDGKATSD 260 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 260 (572)
.+...|++++|...|+++.+. .| +...+..+ ...+...|++++|.+.++++++..+ .+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~ 153 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV----WD 153 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TC
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----Cc
Confidence 999999999999999999875 34 34444444 4667777778888888777777655 56
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008266 261 VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNC 340 (572)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (572)
...+..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH
Confidence 6777777777777777777777777777664 5566777777777777777777777777776642 1122222111000
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCC
Q 008266 341 LCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEP----HIWNVIIDGYGRCGD 416 (572)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~ 416 (572)
. .......+...+.+.|++++|...++++.+.... +. ..+..+...+...|+
T Consensus 232 -----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 232 -----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp -----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccC
Confidence 0 0001111233444555555555555555443322 11 113334455555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008266 417 LSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLD 465 (572)
Q Consensus 417 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 465 (572)
+++|...++...+..+ .+..++..+...+...|++++|...|+++.+.
T Consensus 288 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5555555555554321 24455555555555555555555555555553
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.5e-19 Score=175.00 Aligned_cols=331 Identities=13% Similarity=0.012 Sum_probs=218.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHH
Q 008266 187 NCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTI 266 (572)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 266 (572)
++..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++++..+ .+...+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM----DFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CcchHHHH
Confidence 34566777777777888888888888777653 33566777777777778888888888887777654 56677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 008266 267 LMDSYFKNGDKFQALALWNDMFQKNIQ---TDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK 343 (572)
Q Consensus 267 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (572)
+...+...|++++|...|+++.+.. + .+...+..+...+. ...+..+...+..
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Confidence 7777777888888888777777653 2 23333333311100 0012223445566
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008266 344 QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSI 423 (572)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 423 (572)
.|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665542 334556666666666666666666666666665433 556666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCH
Q 008266 424 RDLMLSFGVSSNVFTFN------------ALILAETRGGSIFDAFSLKKEMLLDGIFPDV----FTYNLLIGASCNLGHI 487 (572)
Q Consensus 424 ~~~~~~~~~~p~~~~~~------------~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~ 487 (572)
++...+..+. +...+. .+...+.+.|++++|...++++.+.... +. ..+..+...+...|++
T Consensus 211 ~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCH
Confidence 6666554322 222222 2356678889999999999888875322 22 2345577888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHh
Q 008266 488 HLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID-HIPFRILKKRYRR 553 (572)
Q Consensus 488 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~ 553 (572)
++|...+++..+.. +.+..+|..+...+...|++++|.+.++++.+. .|+ ...+..+..+...
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Confidence 99999999988752 457788889999999999999999999999886 454 4555555555443
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=2.6e-17 Score=168.19 Aligned_cols=364 Identities=14% Similarity=0.056 Sum_probs=273.1
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHH
Q 008266 138 LWLRRKMIQKGTVPDVLTHNYLVNELCK----IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR----VNELDKALH 209 (572)
Q Consensus 138 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 209 (572)
...+....+.| ++.++..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44455544443 66667777777776 778888888888877653 45667777777777 778888888
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh----cCCHHHHH
Q 008266 210 LFSTMANNGIRPNRVTHNILVHALCK----KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK----NGDKFQAL 281 (572)
Q Consensus 210 ~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 281 (572)
.|++..+.| +...+..|...|.. .+++++|.+.|++....+ +...+..|...|.. .++.++|+
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG------RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 888887754 55666667777776 678888888888887743 45567777777776 77888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHH
Q 008266 282 ALWNDMFQKNIQTDIVAYNVLINGFCL----NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK----QGKLDEASHF 353 (572)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~ 353 (572)
+.|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|..+
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8888887764 56777777777777 788888888888887764 45566667777765 6788888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHH
Q 008266 354 YGVLSKTGVAPDQISYKTIIQGLCI----HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC-----GDLSNAFSIR 424 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~ 424 (572)
|+...+.| +...+..+...|.. .++.++|++.|++..+.+ ++..+..+...|... +++++|...+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 88887754 45566667777776 788888888888887764 556677777777776 8888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 008266 425 DLMLSFGVSSNVFTFNALILAETRGG---SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIHLALQLYDEM 497 (572)
Q Consensus 425 ~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 497 (572)
++..+.+ +...+..+...|...| ++++|.+.|++..+.+ +...+..|...|.. .+++++|...|++.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8888764 4566777777777656 7788888888888763 67777788888887 78899999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 008266 498 LRRGITPDIITYTELIKGHCA----RGNMKEAEEVFAKIQTLGL 537 (572)
Q Consensus 498 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 537 (572)
.+.| +...+..|...|.. .++.++|.+.|++..+.+.
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8865 56777888888887 7889999999999888753
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.2e-17 Score=172.31 Aligned_cols=422 Identities=9% Similarity=-0.015 Sum_probs=267.7
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008266 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+-|...|..++. +.+.|++++|..+|+++++. .|.+...|..++..+.+.|++++|..+|++..... |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 447778888888 47788999999999998876 35567788888888889999999999999988865 466777777
Q ss_pred HHHH-HhcCCHhHHHH----HHHHHHH-CCCCC-CHhHHHHHHHHHHh---------CCChhHHHHHHHHHHhCCCCCCC
Q 008266 195 ITGY-CRVNELDKALH----LFSTMAN-NGIRP-NRVTHNILVHALCK---------KGLLGDAVKFLGEVLADDDGKAT 258 (572)
Q Consensus 195 i~~~-~~~g~~~~A~~----~~~~m~~-~g~~p-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~ 258 (572)
+... ...|++++|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|+++++. +..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~-- 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMI-- 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCT--
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhh--
Confidence 6533 34577776665 6666654 35444 45667777776655 57788888888888873 211
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH------HCC---CCC
Q 008266 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML------KRG---FLP 329 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~------~~g---~~p 329 (572)
.....|..........|. . +...++. ...+++..|..++..+. +.. ++|
T Consensus 163 ~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 222334333221111110 0 0011110 01234455555554421 111 233
Q ss_pred C--------HhHHHHHHHHHHHc----CCH----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH-------cCCHH---
Q 008266 330 D--------VITYNTLLNCLCKQ----GKL----DEASHFYGVLSKTGVAPDQISYKTIIQGLCI-------HGDIV--- 383 (572)
Q Consensus 330 ~--------~~~~~~ll~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~--- 383 (572)
+ ...|...+...... ++. +.+..+|++.... .+.+...|..++..+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 3 12333333222221 122 3566677777664 23466777777777665 57766
Q ss_pred ----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 008266 384 ----KAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN-VFTFNALILAETRGGSIFDAFSL 458 (572)
Q Consensus 384 ----~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 458 (572)
+|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+..+. + ...|..++..+.+.|++++|.++
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHH
Confidence 78888888876222235777888888888888888888888888774321 2 24777777777778888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008266 459 KKEMLLDGIFPDVFTYNLLIGA-SCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL 537 (572)
Q Consensus 459 ~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 537 (572)
|++..+.... +...|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|+++...+.
T Consensus 379 ~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 379 FKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 8888765221 22222222222 235788888888888877652 44567788888888888888888888888887632
Q ss_pred -CCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008266 538 -AID--HIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 538 -~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.|+ ...|...+......|+.+.+..+++++++
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 33677777777778888888888887764
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=6.6e-17 Score=165.13 Aligned_cols=363 Identities=13% Similarity=0.079 Sum_probs=308.7
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----CCChhHHHH
Q 008266 173 DHVIREMSEMRPSPNCATYNAFITGYCR----VNELDKALHLFSTMANNGIRPNRVTHNILVHALCK----KGLLGDAVK 244 (572)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~ 244 (572)
...++...+. .+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 4445554443 366778888888888 899999999999998865 67788888888988 899999999
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHH
Q 008266 245 FLGEVLADDDGKATSDVITSTILMDSYFK----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL----NGDISSAF 316 (572)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 316 (572)
.|++..+.+ +...+..|...|.. .+++++|++.|++..+.| ++..+..+...|.. .+++++|+
T Consensus 101 ~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 101 WYKKAALKG------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999998854 45677888899988 889999999999999876 67788888888887 78999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHH
Q 008266 317 AYFCQMLKRGFLPDVITYNTLLNCLCK----QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI----HGDIVKAREF 388 (572)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 388 (572)
++|++..+.| +...+..+...|.. .++.++|.+.|+...+.| +...+..+...|.. .+++++|.+.
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998875 67788888888888 899999999999998865 56778888888886 7899999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHH
Q 008266 389 LLSMLEKSVVPEPHIWNVIIDGYGR----CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRG-----GSIFDAFSLK 459 (572)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~ 459 (572)
|++..+.+ ++..+..+...|.. .+++++|...|++..+.| +...+..+...|... +++++|...+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 99998874 56677778888877 899999999999998764 566777888888887 8999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 008266 460 KEMLLDGIFPDVFTYNLLIGASCNLG---HIHLALQLYDEMLRRGITPDIITYTELIKGHCA----RGNMKEAEEVFAKI 532 (572)
Q Consensus 460 ~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m 532 (572)
++..+.+ +...+..+...|...| ++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999875 5567778888887766 7899999999999864 67888999999998 89999999999999
Q ss_pred HHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 008266 533 QTLGLAIDHIPFRILKKRYRR----MKESDKARDIHQKWLLRN 571 (572)
Q Consensus 533 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~ 571 (572)
.+.| +...+..|...|.. .++.++|...|++.++.+
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9875 56778889999988 899999999999998754
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=2.9e-17 Score=169.58 Aligned_cols=404 Identities=11% Similarity=0.024 Sum_probs=279.2
Q ss_pred HhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHH-HHcCChhHHHH
Q 008266 96 ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNEL-CKIGDLEKADH 174 (572)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~~~~A~~ 174 (572)
+..+.+...++.... -.|.+...|..++..+.+.|++++|..+|++++... |+...|...+... ...|+.+.|.+
T Consensus 26 ~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 26 QPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp SCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred CCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHH
Confidence 345555555555431 245677899999999999999999999999999873 6888888777543 45688887765
Q ss_pred ----HHHHHhh-CCCC-CCHHHHHHHHHHHHh---------cCCHhHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhC
Q 008266 175 ----VIREMSE-MRPS-PNCATYNAFITGYCR---------VNELDKALHLFSTMANNGIRPNR---VTHNILVHALCKK 236 (572)
Q Consensus 175 ----~~~~~~~-~~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~ 236 (572)
+|++... .|.. ++...|...+....+ .|++++|..+|++..+. |.. ..|..........
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~ 178 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGI 178 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhh
Confidence 6666654 2333 356788888877665 78999999999999873 332 2333332211111
Q ss_pred CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH------HhCC---CCCC--------HHHH
Q 008266 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDM------FQKN---IQTD--------IVAY 299 (572)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~---~~~~--------~~~~ 299 (572)
|. ..+.. ++. .+.++++.|..++..+ .+.. ++|+ ...|
T Consensus 179 ~~-~~~~~----------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w 233 (530)
T 2ooe_A 179 NI-HLAKK----------------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233 (530)
T ss_dssp CH-HHHHH----------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred ch-hHHHH----------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 10 00111 110 1223455565555542 2221 2333 2345
Q ss_pred HHHHHHHHhC----CCH----HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH-------cCCHH-------HHHHHHHHH
Q 008266 300 NVLINGFCLN----GDI----SSAFAYFCQMLKRGFLPDVITYNTLLNCLCK-------QGKLD-------EASHFYGVL 357 (572)
Q Consensus 300 ~~li~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~g~~~-------~A~~~~~~~ 357 (572)
...+...... ++. +.+..+|++.... .+.+...|...+..+.+ .|+++ +|..++++.
T Consensus 234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 4444332221 222 4677888888875 23456777777777765 68877 899999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008266 358 SKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPE-PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV 436 (572)
Q Consensus 358 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 436 (572)
.+.-.+.+...|..++..+.+.|++++|..+|+++.+..+. + ...|..++..+.+.|++++|..+|++..+.... +.
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~ 390 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RH 390 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CT
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-ch
Confidence 86323446888999999999999999999999999986433 3 357888888888999999999999999875332 33
Q ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHH
Q 008266 437 FTFNALIL-AETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRG-ITPD--IITYTEL 512 (572)
Q Consensus 437 ~~~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~l 512 (572)
..|..... .+...|++++|..+|+...+... -+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 33332222 23468999999999999887532 257889999999999999999999999999863 2232 3478888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 008266 513 IKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+......|+.+.+..+.+++.+.
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888999999999999999876
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=7.1e-19 Score=169.73 Aligned_cols=199 Identities=10% Similarity=0.022 Sum_probs=84.1
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008266 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
.++..+..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|...++++.+..| .+...|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 333444444444444444444444444444432 22333334444444444444444444444444333 2333444444
Q ss_pred HHHHhcC-CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008266 196 TGYCRVN-ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 196 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
..+...| ++++|.+.|++..... +.+...+..+...+...|++++|.+.++++++..+ .+...+..+...|...
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK----GCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT----TCSHHHHHHHHHHHHT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHH
Confidence 4444444 4444444444444332 11233344444444444444444444444444332 2233333344444444
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 008266 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQM 322 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 322 (572)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++.
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44444444444444332 223334444444444444444444444433
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1e-18 Score=168.63 Aligned_cols=295 Identities=12% Similarity=0.015 Sum_probs=252.2
Q ss_pred CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHH
Q 008266 149 TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNI 228 (572)
Q Consensus 149 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 228 (572)
.+.+...+..+...+...|++++|.++|+++.+..| .+...+..++..+...|++++|..+++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 356778888999999999999999999999998776 456677788889999999999999999998864 336788899
Q ss_pred HHHHHHhCC-ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008266 229 LVHALCKKG-LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC 307 (572)
Q Consensus 229 ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (572)
+...+...| ++++|.+.|++++...+ .+...|..+...+...|++++|++.++++.+.. +.+...+..+...+.
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEK----TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCT----TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHH
Confidence 999999999 99999999999999776 677889999999999999999999999999875 445677888999999
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHHHc
Q 008266 308 LNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG--------VAPDQISYKTIIQGLCIH 379 (572)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~ 379 (572)
..|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.. .+.+..++..+...+...
T Consensus 171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998863 4467889999999999999999999999887642 133467899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHH
Q 008266 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAE-TRGGSIF 453 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~g~~~ 453 (572)
|++++|...+++..+.... +...+..+...+...|++++|...+++..+..+ .+...+..+..++ ...|+.+
T Consensus 250 g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred cCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchh
Confidence 9999999999999987644 678899999999999999999999999887643 3677888888877 4556543
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=9.4e-19 Score=171.83 Aligned_cols=306 Identities=12% Similarity=-0.019 Sum_probs=147.8
Q ss_pred CChhHHHH-HHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 008266 237 GLLGDAVK-FLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSA 315 (572)
Q Consensus 237 g~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 315 (572)
|++++|.. .+++.+...+..+..+...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 44555554 44444433321111123344455555555555555555555555443 33444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008266 316 FAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (572)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (572)
...|+++.+.. +.+..++..+...+...|++++|...++.+.+.... +...+..+... ..
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~----------- 177 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG----------- 177 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------------------------
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-----------
Confidence 55555555432 223445555555555555555555555555543211 11111100000 00
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008266 396 SVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS-NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTY 474 (572)
Q Consensus 396 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 474 (572)
... ....+..+...+ ..|++++|...++++.+..+.. +..++..+...+...|++++|...++++.+.. +.+...|
T Consensus 178 ~~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 254 (368)
T 1fch_A 178 GAG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 254 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 000 000011111122 4555555555555555432211 35555566666666666666666666655532 1135566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------ChHHH
Q 008266 475 NLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI----------DHIPF 544 (572)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~~~~ 544 (572)
..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+..... ...+|
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 666666666666666666666666542 3345666666666666666666666666665531100 14566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 008266 545 RILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
..++.+|...|+.++|..++++.
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHhCChHhHHHhHHHH
Confidence 66777777777777766665543
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.2e-18 Score=171.04 Aligned_cols=304 Identities=13% Similarity=0.043 Sum_probs=175.0
Q ss_pred cCCHhHHHH-HHHHHHHCCC-CC--CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008266 201 VNELDKALH-LFSTMANNGI-RP--NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 201 ~g~~~~A~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
.|++++|.+ .|++...... .| +...+..+...+...|++++|...|+++++..+ .+..++..+...+...|+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP----KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT----TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCcC
Confidence 466666666 6665443211 11 234566677777777777777777777777654 566777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 008266 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGV 356 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 356 (572)
+++|++.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..+... ...
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~------ 178 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG------ 178 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh------
Confidence 777777777777664 456677777777777777777777777777765311 11111111000 000
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008266 357 LSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP-EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN 435 (572)
Q Consensus 357 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 435 (572)
..+. ..+..+. .+...|++++|...++++.+..+.. +..++..+...+...|++++|...++++.+..+ .+
T Consensus 179 -----~~~~-~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~ 250 (368)
T 1fch_A 179 -----AGLG-PSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-ND 250 (368)
T ss_dssp -------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred -----hccc-HHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CC
Confidence 0000 0111111 1225566666666666665543221 355566666666666666666666666655432 24
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------
Q 008266 436 VFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITP----------- 504 (572)
Q Consensus 436 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------- 504 (572)
..++..+...+...|++++|...++++.+... .+...+..+...+.+.|++++|...|+++.+.. +.
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 328 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccch
Confidence 56666666667777777777777776665421 245666677777777777777777777766531 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008266 505 DIITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 505 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
...+|..+..+|...|+.++|..++++..
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 14677777777777777777777766443
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.4e-16 Score=160.26 Aligned_cols=385 Identities=9% Similarity=-0.074 Sum_probs=218.0
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC----
Q 008266 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEM--------RPSPNCATYNAFITGYCRVNELDKALHLFSTMANNG---- 218 (572)
Q Consensus 151 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---- 218 (572)
.....|+.|...+...|++++|++.|++..+. .......+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888888899999999988876542 112345678888888888889988888888775421
Q ss_pred --CC-CCHhHHHHHHHHHHhC--CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhC
Q 008266 219 --IR-PNRVTHNILVHALCKK--GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY---FKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 219 --~~-p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~ 290 (572)
.. ....++..+..++... +++++|.+.|+++++..+ .++..+..+...+ ...++.++|++.+++..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p----~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP----KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 11 1345566665555543 467888888888888765 5566666555553 3456777888888877766
Q ss_pred CCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 008266 291 NIQTDIVAYNVLINGFCL----NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQ 366 (572)
Q Consensus 291 ~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 366 (572)
+ +.+...+..+...+.. .|++++|.+.+++..... +.+...+..+...|.+.|++++|...+++..+.. +.+.
T Consensus 205 ~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 205 N-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp C-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred C-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 4 4455666655555444 356777888888777652 3356677778888888888888888888877752 3345
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008266 367 ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAE 446 (572)
Q Consensus 367 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 446 (572)
.++..+...|...+.... ... ...........+.++.|...++...+..+. +..++..+...|
T Consensus 282 ~~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~ 344 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHH
Confidence 566666555532211000 000 000000011112345566666665553322 344556666667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008266 447 TRGGSIFDAFSLKKEMLLDGIFPDVF--TYNLLIG-ASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMK 523 (572)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 523 (572)
...|++++|...|++..+....|... .+..+.. .....|++++|+..|++..+. .|+....... .+
T Consensus 345 ~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~ 413 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KD 413 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HH
T ss_pred HHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HH
Confidence 77777777777777766643332211 1222222 223566777777777776663 4443322211 23
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008266 524 EAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 524 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
.+.+++++..+.. +.+..+|..++..|...|++++|.+.|++.++.+
T Consensus 414 ~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 414 KLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3344455554442 3355567777777777777777777777776543
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1e-17 Score=164.28 Aligned_cols=265 Identities=12% Similarity=0.054 Sum_probs=188.7
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008266 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+...|..+...+.+.|++++|+..|+.+++.. +.+..++..+...|.+.|++++|+..|+++.+..| .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45568888999999999999999999998864 45778889999999999999999999999988765 46788999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCC-H----------hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHH
Q 008266 197 GYCRVNELDKALHLFSTMANNGIRPN-R----------VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (572)
.|...|++++|.+.|+++.+.. |+ . ..+..+...+...|++++|.+.+++++...+.. .+..++.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~ 217 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM--IDPDLQT 217 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS--CCHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc--cCHHHHH
Confidence 9999999999999999987742 22 1 222334677778888888888888888766521 2677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC
Q 008266 266 ILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG 345 (572)
Q Consensus 266 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 345 (572)
.+...|...|++++|++.|+++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+..++..+...|.+.|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 88888888888888888888877764 4567777778888888888888888887777652 234666777777777777
Q ss_pred CHHHHHHHHHHHHhCCCC-----------CCHhhHHHHHHHHHHcCCHHHHHHHH
Q 008266 346 KLDEASHFYGVLSKTGVA-----------PDQISYKTIIQGLCIHGDIVKAREFL 389 (572)
Q Consensus 346 ~~~~A~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~ 389 (572)
++++|...++++.+.... .+...|..+..++...|+.+.+.++.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 777777777776653210 01344555555555555555444443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=1.6e-17 Score=162.88 Aligned_cols=277 Identities=14% Similarity=-0.006 Sum_probs=177.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008266 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLN 339 (572)
Q Consensus 260 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 339 (572)
+...+..+...+.+.|++++|++.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 33445666666666666666666666666543 3455566666666666666666666666655542 223455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008266 340 CLCKQGKLDEASHFYGVLSKTGVAPDQ-ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLS 418 (572)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 418 (572)
.|...|++++|...++++.+.. |+. ..+..+. .....+..+...+...|+++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHH
Confidence 5555555555555555555431 111 1111100 01223445577778888888
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008266 419 NAFSIRDLMLSFGVS-SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEM 497 (572)
Q Consensus 419 ~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (572)
+|...++++.+..+. ++..++..+...+...|++++|...++++.+... .+..+|..+...|...|++++|...|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888775432 2577888888888888888888888888887532 25778888888888999999999999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008266 498 LRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLA-----------IDHIPFRILKKRYRRMKESDKARDIHQK 566 (572)
Q Consensus 498 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (572)
.+.. +.+..+|..+..+|...|++++|.+.++++.+.... .+...|..+..++...|+.+.+....++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8752 445788888888999999999999999988765211 0256788888889999999888877665
Q ss_pred H
Q 008266 567 W 567 (572)
Q Consensus 567 ~ 567 (572)
-
T Consensus 353 ~ 353 (365)
T 4eqf_A 353 D 353 (365)
T ss_dssp C
T ss_pred h
Confidence 3
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.5e-17 Score=160.14 Aligned_cols=238 Identities=11% Similarity=0.083 Sum_probs=65.2
Q ss_pred CCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 008266 131 GGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHL 210 (572)
Q Consensus 131 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (572)
.|++++|.++++++ +++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|...
T Consensus 16 ~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 35566666666555 23345666666666666666666666442 3444556666666666666666665
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008266 211 FSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 211 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
++..++. .+++.+.+.++.+|.+.|+++++.++++ . |+..+|+.++..|...|.+++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~--pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------G--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT--------C--C----------------CTTTHHHHHHHT---
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------C--CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 5444432 3344555556666666666666555542 1 34445666666666666666666666544
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 008266 291 NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYK 370 (572)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 370 (572)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 24555556666666666666555554 14555555556666666655553332221 11222233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008266 371 TIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR 413 (572)
Q Consensus 371 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 413 (572)
.++..|.+.|.+++|..+++...... +.....|+-+..+|++
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 45555555555555555555555443 2234444444444443
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=3.5e-16 Score=159.05 Aligned_cols=387 Identities=11% Similarity=-0.067 Sum_probs=259.7
Q ss_pred CCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhC--------CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCC--
Q 008266 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQK--------GTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR-- 183 (572)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 183 (572)
.+.....||.|...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445567999999999999999999999987642 112345688999999999999999999999876521
Q ss_pred ---C--CCCHHHHHHHHHHHHhc--CCHhHHHHHHHHHHHCCCCCCHhHHHHHHHH---HHhCCChhHHHHHHHHHHhCC
Q 008266 184 ---P--SPNCATYNAFITGYCRV--NELDKALHLFSTMANNGIRPNRVTHNILVHA---LCKKGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 184 ---~--~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~ 253 (572)
+ .....++.....++... +++++|++.|++..+... -++..+..+..+ +...++.++|.+.+++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 12345666666555554 579999999999987632 245555555544 456788899999999999977
Q ss_pred CCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 008266 254 DGKATSDVITSTILMDSYFK----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLP 329 (572)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 329 (572)
+ .+..++..+...+.. .|+.++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +-
T Consensus 206 p----~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 279 (472)
T 4g1t_A 206 P----DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PN 279 (472)
T ss_dssp S----SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred C----cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CC
Confidence 6 677777777666655 467789999999988775 6678889999999999999999999999998863 23
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008266 330 DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIID 409 (572)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 409 (572)
+..++..+...|...+.... ... . ..........+..+.|...+++..+..+. +...+..+..
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~ 342 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILAS 342 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHH
Confidence 45666666655543211111 100 0 00011111223467888888888876544 5667888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008266 410 GYGRCGDLSNAFSIRDLMLSFGVSSNVF--TFNALIL-AETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH 486 (572)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 486 (572)
.|...|++++|...|++..+....+... .+..+.. .....|++++|+..|++..+. .|+..... +.
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~ 411 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KM 411 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HH
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HH
Confidence 9999999999999999988765443321 2223322 345678999999999998874 45533222 22
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008266 487 IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 487 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 536 (572)
...+..+++...+.. +.+..+|..+..+|...|++++|++.|+++.+.|
T Consensus 412 ~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344555666666543 6677899999999999999999999999999864
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=4.7e-17 Score=156.69 Aligned_cols=282 Identities=10% Similarity=-0.050 Sum_probs=187.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008266 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLN 339 (572)
Q Consensus 260 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 339 (572)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 33445566666666677777777776666553 3455566666666666666666666666666542 224555555666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHHhcCCH
Q 008266 340 CLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVI-ID-GYGRCGDL 417 (572)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~ 417 (572)
.+...|++++|...++.+.+... .+...+..+... .|+......+ .. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 66666666666666666655421 111122111000 0011111112 22 36677888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008266 418 SNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEM 497 (572)
Q Consensus 418 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (572)
++|...++++.+..+. +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888775433 677888888888889999999999988887532 25778888899999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008266 498 LRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-----------DHIPFRILKKRYRRMKESDKARDIHQK 566 (572)
Q Consensus 498 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (572)
.+.. +.+..++..+...|...|++++|.+.++++.+..... +...|..+..++.+.|+.++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8753 4567888899999999999999999999988763221 356788899999999999999988876
Q ss_pred HHh
Q 008266 567 WLL 569 (572)
Q Consensus 567 ~l~ 569 (572)
.++
T Consensus 312 ~l~ 314 (327)
T 3cv0_A 312 NVE 314 (327)
T ss_dssp CSH
T ss_pred HHH
Confidence 543
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=3.5e-17 Score=157.58 Aligned_cols=265 Identities=10% Similarity=-0.056 Sum_probs=174.8
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008266 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+...|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++++.+..+ .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 44567788888999999999999999988763 44677888888999999999999999999988765 46788888899
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH--------------HH-HHHhCCChhHHHHHHHHHHhCCCCCCCccH
Q 008266 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNIL--------------VH-ALCKKGLLGDAVKFLGEVLADDDGKATSDV 261 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 261 (572)
.+...|++++|.+.++++...... +...+..+ .. .+...|++++|.+.++++++..+ .+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~ 172 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP----NDA 172 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST----TCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC----CCH
Confidence 999999999999999998875322 22333332 11 24555666777777777666554 556
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008266 262 ITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCL 341 (572)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 341 (572)
..+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 666666666666777777777666666553 3445566666666666666666666666665542 22345555555666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC-----------CHhhHHHHHHHHHHcCCHHHHHHHHH
Q 008266 342 CKQGKLDEASHFYGVLSKTGVAP-----------DQISYKTIIQGLCIHGDIVKAREFLL 390 (572)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~ 390 (572)
.+.|++++|.+.++.+.+..... +...+..+...+.+.|+.++|..+++
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 66666666666665555432110 23445555555555555555555444
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.5e-17 Score=160.10 Aligned_cols=268 Identities=12% Similarity=0.085 Sum_probs=133.2
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008266 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
+++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++..++. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 44569999999999999999999999652 57789999999999999999999988777664 34577889999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008266 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|..++.++.+.|
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLG 162 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------------TCHHHHHHHHHTTT
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhc
Confidence 99999999999998884 367789999999999999999999999866 25899999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 008266 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYG 355 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 355 (572)
++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|.+++|..+++
T Consensus 163 ~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 163 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp CHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998 27899999999999999999996655442 2233445578899999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 008266 356 VLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK-SVVP------EPHIWNVIIDGYGRCGDLSNAFSI 423 (572)
Q Consensus 356 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 423 (572)
...... +.....|+-+.-.|++- ++++..+.++...++ +++| +...|.-++-.|...++++.|...
T Consensus 232 ~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 232 AALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 998764 55677888887777654 344444444433322 2222 355688888888888898888763
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=2.1e-14 Score=154.04 Aligned_cols=379 Identities=14% Similarity=0.124 Sum_probs=289.3
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCC--CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008266 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGT--VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGY 198 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 198 (572)
-...+.+|...|.+.+|++++++..-.+- .-+...-+.++....+. +..+..+..++.... + ..-+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 35678889999999999999999884421 13445666677777666 556665655555321 1 33467788
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008266 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
...|.+++|..+|++.. -.....+.++. ..+++++|.++.+++ .+..+|..+..++...|+++
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv---------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCHH
Confidence 88999999999999962 12222333332 778899999999865 55778999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008266 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 279 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 358 (572)
+|++.|.+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence 999999664 478889999999999999999999998877654 33333445889999999988644442
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008266 359 KTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFT 438 (572)
Q Consensus 359 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 438 (572)
+ .++...|..+...|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 2 346677788999999999999999999985 36999999999999999999999876 36789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008266 439 FNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA 518 (572)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 518 (572)
|..+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|+-+...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 999999999999999998877643 3366677899999999999999999998887543 3344677777777776
Q ss_pred c--CCHHHHHHHHHHHHHcCCCC------ChHHHHHHHHHHHhcCCHHHHHH
Q 008266 519 R--GNMKEAEEVFAKIQTLGLAI------DHIPFRILKKRYRRMKESDKARD 562 (572)
Q Consensus 519 ~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~~ 562 (572)
. ++..++.++|..-. +++| +...|.-++-.|.+.|+++.|..
T Consensus 1327 y~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred CCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4 34444444444222 2222 45679999999999999999984
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=4.8e-14 Score=151.24 Aligned_cols=348 Identities=12% Similarity=0.065 Sum_probs=238.1
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008266 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
.+....+.|+....+. +..+...+.+++... + ..-+...+...|.+++|..+|++.. -.....+.++
T Consensus 1020 ~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi 1086 (1630)
T 1xi4_A 1020 EHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI 1086 (1630)
T ss_pred ccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH
Confidence 3455666677766666 446666665555422 1 3336677788888888888888852 2222233333
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008266 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
. ..+++++|.++.++.. ++.+|..+..++.+.|++++|.+.|.+. .+...|..++..+.+.|
T Consensus 1087 e---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA---------dD~say~eVa~~~~~lG 1148 (1630)
T 1xi4_A 1087 E---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSG 1148 (1630)
T ss_pred H---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc---------CChHHHHHHHHHHHHcC
Confidence 2 6677888888877552 4677888888888888888888888654 56677788888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 008266 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYG 355 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 355 (572)
++++|.+.+....+.. +++...+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|.
T Consensus 1149 kyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1149 NWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred CHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8888888888777654 33333345778888888877533332 2 3455667778888888888888888887
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008266 356 VLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN 435 (572)
Q Consensus 356 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 435 (572)
.. ..|..+...|++.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..+
T Consensus 1220 kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~ 1279 (1630)
T 1xi4_A 1220 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 1279 (1630)
T ss_pred hh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcC
Confidence 74 37888888888888888888888876 25677888888888888888777765432 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHH
Q 008266 436 VFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN--LGHIHLALQLYDEMLRRGITP------DII 507 (572)
Q Consensus 436 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p------~~~ 507 (572)
...+..++..|.+.|.+++|+.+++...... .-....|+-|...+++ -++..++.++|..-.. ++| +..
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAH 1356 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHH
Confidence 6667788888888888888888887776543 2234556666666654 3344455555543222 333 446
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 008266 508 TYTELIKGHCARGNMKEAE 526 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~ 526 (572)
.|..++..|.+.|+++.|.
T Consensus 1357 lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHhcccHHHHH
Confidence 6888888888888888777
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=4.8e-16 Score=146.52 Aligned_cols=272 Identities=12% Similarity=0.027 Sum_probs=162.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 008266 271 YFKNGDKFQALALWNDMFQKNIQTD--IVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLD 348 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 348 (572)
....|++..|+..++..... .|+ ......+.++|...|++++|+..++. .-+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 44556666666655554332 122 12334455666666666666654433 12445555666666666666666
Q ss_pred HHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008266 349 EASHFYGVLSKTGVAP-DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLM 427 (572)
Q Consensus 349 ~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 427 (572)
+|.+.++.+...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666554323 344455555666666666666666665 235566666667777777777777777776
Q ss_pred HhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008266 428 LSFGVSSNVFTF---NALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITP 504 (572)
Q Consensus 428 ~~~~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 504 (572)
.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+.. +.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 6643 332111 122233344577777888887777652 3367777777777888888888888888877653 44
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008266 505 DIITYTELIKGHCARGNMKE-AEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDI 563 (572)
Q Consensus 505 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 563 (572)
+..++..++..+...|+.++ +.++++++.+. .|+.... .+...+.+.++++..-
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHHHHHHHHHHHHHH
Confidence 66777777777777777765 46777777775 4544322 2334455555555443
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=3.8e-16 Score=147.26 Aligned_cols=254 Identities=11% Similarity=0.020 Sum_probs=208.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 008266 303 INGFCLNGDISSAFAYFCQMLKRGFLPDV--ITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG 380 (572)
Q Consensus 303 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 380 (572)
++-....|++..|+..++..... .|+. .....+..+|...|+++.|...++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34566789999999998876543 3443 3456678899999999999986644 24567788899999999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008266 381 DIVKAREFLLSMLEKSVVP-EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLK 459 (572)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 459 (572)
+.++|++.++++...+..| ++..+..+...+...|++++|...+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999876444 566777888999999999999999987 467889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008266 460 KEMLLDGIFPDVFTY---NLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 460 ~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 536 (572)
+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|.+.++++.+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999864 553221 22334455569999999999999987 47788999999999999999999999999999873
Q ss_pred CCCChHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCC
Q 008266 537 LAIDHIPFRILKKRYRRMKESDK-ARDIHQKWLLRNK 572 (572)
Q Consensus 537 ~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~l~~~~ 572 (572)
+-+..++..++..+...|+.++ +.++++++++.++
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3367789999999999999976 6789999987653
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=177.92 Aligned_cols=119 Identities=12% Similarity=0.080 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008266 401 PHIWNVIIDGYGRCGDLSNAFSIRDLMLS---FGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLL 477 (572)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 477 (572)
..+|+++|++||+.|++++|..+|++|.+ .|+.||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44677777777777777777777766543 366777777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008266 478 IGASCNLGH-IHLALQLYDEMLRRGITPDIITYTELIKGHCAR 519 (572)
Q Consensus 478 i~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 519 (572)
|+++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 777777776 356677777777777777777777776554443
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=177.42 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008266 433 SSNVFTFNALILAETRGGSIFDAFSLKKEMLL---DGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITY 509 (572)
Q Consensus 433 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 509 (572)
..-..|||++|++|++.|++++|.++|.+|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33467999999999999999999999988764 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 008266 510 TELIKGHCARGNM-KEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKES 557 (572)
Q Consensus 510 ~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 557 (572)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.+..+.+-+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL 252 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH
Confidence 9999999999985 78999999999999999999999888776665433
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8e-15 Score=135.67 Aligned_cols=226 Identities=12% Similarity=0.091 Sum_probs=179.8
Q ss_pred HHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC--C----HHHH
Q 008266 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSP--N----CATY 191 (572)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 191 (572)
...|..+...+...|++++|...|+++.+.. .+..++..+...+...|++++|...+++..+..+.. + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4568888889999999999999999988876 778888999999999999999999999887754422 1 5788
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 008266 192 NAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (572)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (572)
..+...+...|++++|...|++.... .|+. ..+...|++++|...++.+....+ .+...+..+...+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP----EKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc----chHHHHHHHHHHH
Confidence 88888889999999999999988874 3443 345566778888888888888665 6778888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 008266 272 FKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEAS 351 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 351 (572)
...|++++|.+.|++..+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88888888888888888765 4567778888888888888888888888877753 334667777777788888888888
Q ss_pred HHHHHHHhC
Q 008266 352 HFYGVLSKT 360 (572)
Q Consensus 352 ~~~~~~~~~ 360 (572)
..++...+.
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877777654
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=5.7e-15 Score=148.50 Aligned_cols=347 Identities=13% Similarity=-0.027 Sum_probs=186.5
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh---hHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008266 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDL---EKADHVIREMSEMRPSPNCATYNAFITGYC 199 (572)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (572)
.+...+.+.|++++|.++|++..+.| ++.++..|...|...|+. ++|...|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677788888899999888888765 455566677777777777 7888888887653 4455666666455
Q ss_pred hcC-----CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhH---HHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 008266 200 RVN-----ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGD---AVKFLGEVLADDDGKATSDVITSTILMDSY 271 (572)
Q Consensus 200 ~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (572)
..+ ++++|...|++..+.|. ...+..|...|...+..++ +.+.+......+ +...+..|...|
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g------~~~a~~~Lg~~y 151 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG------YPEAGLAQVLLY 151 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT------CTTHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC------CHHHHHHHHHHH
Confidence 544 67788888888887653 2266667777776665443 344444443322 234556666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc----
Q 008266 272 FKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNG---DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ---- 344 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---- 344 (572)
...+.++++......+.+.-...++..+..+...|...| +.++|+++|++..+.| .++...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 776644333333222222111223336667777777777 7777777777777665 23444444555555443
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----C
Q 008266 345 GKLDEASHFYGVLSKTGVAPDQISYKTIIQG-L--CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCG-----D 416 (572)
Q Consensus 345 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 416 (572)
+++++|..+|+... . -+...+..+... + ...+++++|.+.|++..+.| ++..+..+...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 56777777777665 2 244455555554 2 34666777777777766654 4555555655555 33 6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 008266 417 LSNAFSIRDLMLSFGVSSNVFTFNALILAETR----GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIH 488 (572)
Q Consensus 417 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~ 488 (572)
+++|...|++.. . -+...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..+++
T Consensus 303 ~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 303 AKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp HHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHH
T ss_pred HHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHH
Confidence 666666666555 2 244555555555544 2366666666666665542 2233344444442 34566
Q ss_pred HHHHHHHHHHHCC
Q 008266 489 LALQLYDEMLRRG 501 (572)
Q Consensus 489 ~A~~~~~~m~~~g 501 (572)
+|...|+...+.|
T Consensus 376 ~A~~~~~~A~~~g 388 (452)
T 3e4b_A 376 NAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCC
Confidence 6666666666554
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=7e-15 Score=147.89 Aligned_cols=378 Identities=14% Similarity=0.029 Sum_probs=235.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 008266 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL---DKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (572)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 235 (572)
+...+.+.|++++|.++|++..+.+. ...+..+...|...|+. ++|.+.|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 56667778889999999988877552 34455566666667777 8888888888753 45556666665555
Q ss_pred CC-----ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008266 236 KG-----LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF---QALALWNDMFQKNIQTDIVAYNVLINGFC 307 (572)
Q Consensus 236 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (572)
.+ +.++|...|++..+.+. ++ .+..|...|...+..+ ++.+.+......| ++..+..+...|.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~----~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE----GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC----SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC----HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 54 67888999988888664 33 6677777777665433 3445555555444 4556667777777
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc----C
Q 008266 308 LNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG---KLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH----G 380 (572)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 380 (572)
..+.++++......+.+.-...+...+..+...|...| +.++|.+.|+...+.| +++...+..+...|... +
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 77755544444333322211223337777888888888 8888888888888876 34555556666666544 6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CH
Q 008266 381 DIVKAREFLLSMLEKSVVPEPHIWNVIIDG-Y--GRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG-----SI 452 (572)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~~ 452 (572)
+.++|++.|++.. . -++..+..+... + ...+++++|...|++..+.| +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 8889999998887 3 255566666666 4 46788999999998888765 5667777777776 44 88
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 008266 453 FDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA----RGNMKE 524 (572)
Q Consensus 453 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~ 524 (572)
++|...|++.. . -+...+..|...|.. ..++++|...|++..+.| +......|...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHH
Confidence 89998888877 3 256667777777765 348889999999888766 34455566666663 458888
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008266 525 AEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 525 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
|..+|++..+.|.. +.......+......++.++|.++.+++.+
T Consensus 377 A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 377 AYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999888887632 222222222222334466777777777654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.5e-14 Score=133.83 Aligned_cols=226 Identities=13% Similarity=0.057 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CC----HhhH
Q 008266 296 IVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA--PD----QISY 369 (572)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 369 (572)
...+..+...+...|++++|...|++..+.. .+...+..+...+...|++++|...++...+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777888888888888888888887775 66777888888888888888888888877664211 11 4667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008266 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRG 449 (572)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 449 (572)
..+...+...|++++|.+.++++.+.. |+. ..+...|++++|...++.+....+ .+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 777777778888888888888777643 332 345556677777777777766432 2455666777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008266 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVF 529 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 529 (572)
|++++|...++++.+... .+...|..+...+...|++++|...++++.+.. +.+...|..+..++...|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777777777776532 246667777777777777777777777777653 445667777777777777777777777
Q ss_pred HHHHHc
Q 008266 530 AKIQTL 535 (572)
Q Consensus 530 ~~m~~~ 535 (572)
+++.+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777654
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.4e-14 Score=130.32 Aligned_cols=198 Identities=13% Similarity=-0.065 Sum_probs=128.2
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008266 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI 443 (572)
Q Consensus 364 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 443 (572)
++...+..+...+.+.|++++|...|++..+..+. ++..+..+...+.+.|++++|...+++..+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 44555666666666666666666666666665443 5566666666666666666666666666654332 455666666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008266 444 LAETRG-----------GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTEL 512 (572)
Q Consensus 444 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 512 (572)
..+... |++++|...+++..+..+. +...+..+...+...|++++|+..|+++.+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 8888888888887775322 46677778888888888888888888888765 677778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008266 513 IKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
..+|...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888888888888888888762 235566777888888888888888877764
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.8e-14 Score=129.57 Aligned_cols=194 Identities=15% Similarity=0.078 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 008266 155 THNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALC 234 (572)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 234 (572)
.+..+...+.+.|++++|...|++..+..| .+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 333333344444444444444444433333 233333344444444444444444444433321 112333333333333
Q ss_pred hC-----------CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008266 235 KK-----------GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (572)
Q Consensus 235 ~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 303 (572)
.. |++++|...++++++..+ .+...+..+...+...|++++|++.|++..+.. .++..+..+.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNP----RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 33 555555555555555443 445555555555555555555555555555544 4455555555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008266 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVL 357 (572)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 357 (572)
..+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555555555555555431 223444445555555555555555555443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=1.1e-12 Score=122.60 Aligned_cols=224 Identities=14% Similarity=-0.037 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 008266 295 DIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK----QGKLDEASHFYGVLSKTGVAPDQISYK 370 (572)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 370 (572)
++.++..+...+...|++++|+..|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667777777888888888888888887773 245666777777777 888888888888877764 667777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008266 371 TIIQGLCI----HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR----CGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442 (572)
Q Consensus 371 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 442 (572)
.+...|.. .+++++|++.+++..+.+ ++..+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888877764 66677777777777 788888888888777754 45566667
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008266 443 ILAETR----GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 443 l~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777766 777888888877777653 45666677777777 777888888777777753 2566667777
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 008266 515 GHCA----RGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 515 ~~~~----~g~~~~A~~~~~~m~~~g 536 (572)
.|.. .+++++|.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7777 777777777777777764
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=1.5e-13 Score=126.83 Aligned_cols=201 Identities=12% Similarity=0.035 Sum_probs=151.8
Q ss_pred HHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008266 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+..+ .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 5677888888888888888888888887753 44667778888888888888888888888877655 366777788888
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008266 198 YCRVNELDKALHLFSTMANNGIRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
+...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++++..+ .+...+..+...+...|+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR----NQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCC
Confidence 888888888888888887632333 455667777777888888888888888777654 567777777788888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008266 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
+++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 191 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 191 YVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888887777654 455666777777777777777777777777665
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=5.6e-14 Score=131.25 Aligned_cols=196 Identities=10% Similarity=0.070 Sum_probs=88.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC--CHHHHHHHHHHH
Q 008266 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSP--NCATYNAFITGY 198 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~ 198 (572)
+......+...|++++|+..|+++.+.. +.+...+..+...+...|++++|+..+++..+....+ ....|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444455555555555555555555442 2233345555555555555555555555555422111 122344455555
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008266 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
...|++++|.+.|++..+.. +.+..++..+...+...|++++|.+.++++++..+ .+...+..+...+...++++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT----TDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC----CCHHHHHHHHHHHHHTTCHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC----CcHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554432 11334444444455555555555555554444332 34444444442222223444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHH
Q 008266 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGD---ISSAFAYFCQML 323 (572)
Q Consensus 279 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~ 323 (572)
+|.+.|+++.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 4444444444432 2223333334444444343 334444444433
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.63 E-value=1.1e-11 Score=128.92 Aligned_cols=428 Identities=10% Similarity=0.020 Sum_probs=269.3
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC---hhHHHHHHHHHhhCCC-CCCHHH
Q 008266 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGD---LEKADHVIREMSEMRP-SPNCAT 190 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~ 190 (572)
+-|..+|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.|+ ++.+..+|++.....+ .|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 468899999999999999999999999999987 46677888889998888898 9999999999988662 378889
Q ss_pred HHHHHHHHHhcCCH--------hHHHHHHHHHHH-CCC-CCC-HhHHHHHHHHHHh---------CCChhHHHHHHHHHH
Q 008266 191 YNAFITGYCRVNEL--------DKALHLFSTMAN-NGI-RPN-RVTHNILVHALCK---------KGLLGDAVKFLGEVL 250 (572)
Q Consensus 191 ~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~ 250 (572)
|...+....+.++. +...++|+.... .|. .|+ ...|...+..... .++++.+..+|+.++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 98888777665553 344578877654 465 554 4677777765442 345778999999998
Q ss_pred hCCCCCCCccHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCC----CCC----------------
Q 008266 251 ADDDGKATSDVITSTILMDSYFK-------------NGDKFQALALWNDMFQ--KNI----QTD---------------- 295 (572)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~--~~~----~~~---------------- 295 (572)
.... . .-..+|......--. ..+++.|...+.++.. .++ +..
T Consensus 222 ~iP~-~--~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 222 CQPM-D--CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp TSCC-S--SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred hCcc-H--HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 6432 1 223344332222111 1123334444444321 111 100
Q ss_pred ---HHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCC
Q 008266 296 ---IVAYNVLINGFCLNG-------DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEAS-HFYGVLSKTGVAP 364 (572)
Q Consensus 296 ---~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~~~~~ 364 (572)
...|...+.---..+ ..+.+..+|+++... ++-+...|...+..+.+.|+.++|. .+|+..... ++.
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~ 376 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPN 376 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCC
Confidence 123444433222221 123345667776654 3445666666677677777777775 888877764 445
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHH
Q 008266 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKS---------VVPE------------PHIWNVIIDGYGRCGDLSNAFSI 423 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~ 423 (572)
+...|-..+....+.|++++|.++|+++.+.. ..|+ ...|...+....+.|+.+.|..+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666777777777888888888888776531 0121 23566667777777788888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008266 424 RDLMLSFGVSSNVFTFNALILAETRG-GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI 502 (572)
Q Consensus 424 ~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 502 (572)
|..+.+.........|...+..-.+. ++.+.|.++|+...+. ..-+...|...++.....|+.+.|..+|++......
T Consensus 457 f~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 457 FGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 88777641111223333222222233 4478888888877765 223455666777777777888888888888776531
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 008266 503 TP--DIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 551 (572)
Q Consensus 503 ~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 551 (572)
.+ ....|...+..-...|+.+.+..+.+++.+. .|+......+++-|
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 11 2356777777777788888888888888776 34444444444433
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=2.1e-13 Score=123.17 Aligned_cols=203 Identities=13% Similarity=0.056 Sum_probs=136.6
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008266 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
.+...|..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|.+.++++.+..+ .+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 345667777777777788888888777777653 34566777777777777777777777777776554 3566677777
Q ss_pred HHHHhc-CCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008266 196 TGYCRV-NELDKALHLFSTMANNGIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 196 ~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
..+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++++..+ .+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP----QFPPAFKELARTKML 159 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCchHHHHHHHHHHH
Confidence 777777 777777777777766222222 45566666777777777777777777766554 556666677777777
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008266 274 NGDKFQALALWNDMFQKNIQ-TDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
.|++++|.+.++++.+.. + .+...+..+...+...|+.+++..+++.+.+.
T Consensus 160 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777777666553 2 45555666666666667777776666666543
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=1.7e-11 Score=127.51 Aligned_cols=433 Identities=6% Similarity=-0.030 Sum_probs=299.6
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---HhHHHHH
Q 008266 134 IGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE---LDKALHL 210 (572)
Q Consensus 134 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 210 (572)
..+.+..|++.+... +-|..+|..++..+.+.+.++.+..+|+++....| .....|...+..-.+.|+ ++.+.++
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445555666665553 56899999999999999999999999999999876 577889999999889898 9999999
Q ss_pred HHHHHHCC-CCCCHhHHHHHHHHHHhCCCh--------hHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH---------
Q 008266 211 FSTMANNG-IRPNRVTHNILVHALCKKGLL--------GDAVKFLGEVLADDDGKATSDVITSTILMDSYF--------- 272 (572)
Q Consensus 211 ~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~--------~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------- 272 (572)
|++..... ..|+...|...+....+.++. +...++|+.++..-....+.+...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998763 137888888887766665543 344578887775322101256678888887654
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHH----------hCCCHHHHHHHHHHHHHC--CC----C-----
Q 008266 273 KNGDKFQALALWNDMFQKNIQTDIVAYNV---LINGFC----------LNGDISSAFAYFCQMLKR--GF----L----- 328 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---li~~~~----------~~g~~~~a~~~~~~m~~~--g~----~----- 328 (572)
..++++.+..+|+.+.......-..+|.. +-.... ....++.|...+.++... ++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 34457889999999885321111233322 111110 011233445555443321 11 1
Q ss_pred ------C-----C---HhHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHH-
Q 008266 329 ------P-----D---VITYNTLLNCLCKQG-------KLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAR- 386 (572)
Q Consensus 329 ------p-----~---~~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~- 386 (572)
| + ...|...+..--..+ ..+.+..+|++.... ++-+...|-..+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 123333333222221 123455678888775 4557888888898888999999997
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHH
Q 008266 387 EFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV---------SSN------------VFTFNALILA 445 (572)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~p~------------~~~~~~ll~~ 445 (572)
++|++..... +.+...|...+....+.|++++|..+|+.+..... .|+ ...|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999998753 34667788888889999999999999999876310 131 3467777887
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008266 446 ETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNL-GHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKE 524 (572)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 524 (572)
..+.|+.+.|..+|.++.+....+....|...+..-.+. ++++.|..+|+...+. .+-+...|...+......|+.+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 788899999999999998761111233343333333344 4599999999999986 45577778889998889999999
Q ss_pred HHHHHHHHHHcCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008266 525 AEEVFAKIQTLGLAI--DHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 525 A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
|..+|+++......+ ....|..+++.-.+.|+.+.+..+.+++.+..
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999873222 23468888888889999999999999997653
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=1.9e-13 Score=127.63 Aligned_cols=253 Identities=15% Similarity=0.072 Sum_probs=201.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HhHHHHH
Q 008266 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPN--RVTHNIL 229 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l 229 (572)
|+..+......+...|++++|+..|++..+..| .+...+..+...+...|++++|++.+++..+.+..|+ ...|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 344566778889999999999999999999876 3566888999999999999999999999988432222 2348889
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 008266 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (572)
Q Consensus 230 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (572)
...+...|++++|.+.|+++++..+ .+..++..+...|...|++++|++.|++..+.. +.+...|..+...+...
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDT----TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST----TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999776 677899999999999999999999999998874 55677787777344456
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC---HHHHHHHHHHHHhCC-CCCC------HhhHHHHHHHHHHc
Q 008266 310 GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGK---LDEASHFYGVLSKTG-VAPD------QISYKTIIQGLCIH 379 (572)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~ 379 (572)
+++++|.+.|+++.+.. +.+...+..+...+...|+ +++|...++...+.. ..|+ ..+|..+...|...
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 69999999999998863 3346777788888888888 888988888876642 1133 25788899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008266 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYG 412 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 412 (572)
|++++|.+.++++.+..+. ++..+..+.....
T Consensus 235 ~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPT-NKKAIDGLKMKLE 266 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHhcCcc-HHHHHHHhhhhhc
Confidence 9999999999999987644 5666655544433
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=2.8e-13 Score=124.91 Aligned_cols=201 Identities=11% Similarity=-0.092 Sum_probs=145.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008266 331 VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDG 410 (572)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 410 (572)
...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4566777777888888888888888777653 345677777777888888888888888887776443 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008266 411 YGRCGDLSNAFSIRDLMLSFGVSS-NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHL 489 (572)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (572)
+...|++++|...++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888887776632233 455667777777778888888888877776532 246677777777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008266 490 ALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 490 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
|...++++.+.. +.+...+..+...+...|+.++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888887777642 455666777777777788888888888877775
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=2e-13 Score=133.09 Aligned_cols=248 Identities=12% Similarity=0.059 Sum_probs=187.8
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC-hhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008266 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGD-LEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
+...|+.+...+.+.|++++|+..++++++.. +-+..+|+.+..++.+.|+ +++|+..|+++.+..| .+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 34578888888888899999999999988763 4467788888888989996 9999999999988777 4778888888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh-c
Q 008266 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK-N 274 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 274 (572)
.++...|++++|+..|+++++... -+...|..+..++...|++++|+..++++++..+ .+...|+.+..++.. .
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P----~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV----RNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhc
Confidence 889899999999999999887642 3677888888888889999999999999988776 788888888888888 5
Q ss_pred CCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC--
Q 008266 275 GDKFQA-----LALWNDMFQKNIQTDIVAYNVLINGFCLNG--DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG-- 345 (572)
Q Consensus 275 g~~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-- 345 (572)
|..++| ++.+++..... +-+...|+.+...+...| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcc
Confidence 554666 47777777664 456677877777777777 577888888776 32 2345666777777777763
Q ss_pred -------CHHHHHHHHHHH-HhCCCCCC-HhhHHHHHHHH
Q 008266 346 -------KLDEASHFYGVL-SKTGVAPD-QISYKTIIQGL 376 (572)
Q Consensus 346 -------~~~~A~~~~~~~-~~~~~~~~-~~~~~~li~~~ 376 (572)
..++|.++++.+ .+. .|. ...|..+...+
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 247777788777 553 232 34444444433
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=2.7e-12 Score=119.91 Aligned_cols=225 Identities=12% Similarity=-0.009 Sum_probs=156.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHhHH
Q 008266 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL----NGDISSAFAYFCQMLKRGFLPDVITY 334 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (572)
.+..++..+...+...|++++|++.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45556666667777777777777777776663 244566666666666 777777777777776654 55666
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008266 335 NTLLNCLCK----QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI----HGDIVKAREFLLSMLEKSVVPEPHIWNV 406 (572)
Q Consensus 335 ~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (572)
..+...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666666776 777777777777776653 56666677777777 777777777777777754 4556666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008266 407 IIDGYGR----CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETR----GGSIFDAFSLKKEMLLDGIFPDVFTYNLLI 478 (572)
Q Consensus 407 li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 478 (572)
+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 6667766 777777777777777653 45666677777777 778888888888777753 255666777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCC
Q 008266 479 GASCN----LGHIHLALQLYDEMLRRG 501 (572)
Q Consensus 479 ~~~~~----~g~~~~A~~~~~~m~~~g 501 (572)
..|.. .+++++|...|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 778888888888877754
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=2.6e-13 Score=132.26 Aligned_cols=249 Identities=13% Similarity=0.043 Sum_probs=193.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008266 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE-LDKALHLFSTMANNGIRPNRVTHNILV 230 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll 230 (572)
+..+|..+...+.+.|++++|+..++++.+..| .+..+|+.+..++...|+ +++|+..|++...... -+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 345678888889999999999999999998877 478889999999999997 9999999999988643 2678889999
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-C
Q 008266 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL-N 309 (572)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~ 309 (572)
.++...|++++|+..|+++++..+ .+..+|..+..++.+.|++++|++.|+++++.. +.+...|+.+...+.. .
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP----~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA----KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc----cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999776 888999999999999999999999999999876 5678889888888888 5
Q ss_pred CCHHHH-----HHHHHHHHHCCCCCCHhHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC--
Q 008266 310 GDISSA-----FAYFCQMLKRGFLPDVITYNTLLNCLCKQG--KLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG-- 380 (572)
Q Consensus 310 g~~~~a-----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 380 (572)
|..++| ++.|++.++.. +-+...|..+...+.+.| ++++|.+.+..+ +. .+.+...+..+...|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcc
Confidence 665777 47777777652 224667777777777777 577888877777 32 3445677777777777753
Q ss_pred -------CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 008266 381 -------DIVKAREFLLSM-LEKSVVPEPHIWNVIIDGY 411 (572)
Q Consensus 381 -------~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~ 411 (572)
..++|+++++++ .+.++. ....|..+...+
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 247788888887 554322 344455554443
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=4.8e-14 Score=131.85 Aligned_cols=122 Identities=14% Similarity=-0.029 Sum_probs=59.9
Q ss_pred hCCChhhHHHHHHHHHhCCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 008266 130 LGGKIGTALWLRRKMIQKGT---VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDK 206 (572)
Q Consensus 130 ~~g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 206 (572)
..|++++|+..|+.+.+... +.+..++..+...+...|++++|...|+++.+..| .+..+|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 34555555555555555421 11234445555555555555555555555555443 244455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 008266 207 ALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 207 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 253 (572)
|.+.|++..+.. +.+..++..+...+...|++++|.+.++++++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 555555554432 1134444445555555555555555555554433
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=4.9e-14 Score=131.83 Aligned_cols=118 Identities=11% Similarity=-0.100 Sum_probs=53.5
Q ss_pred CCHhHHHHHHHHHHHCCCC---CCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008266 202 NELDKALHLFSTMANNGIR---PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
|++++|++.|+++.+.... .+..++..+...+...|++++|...|+++++..+ .+..++..+...|...|+++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP----DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHccCHH
Confidence 4444444444444443110 1233344444444445555555555554444333 34444444455555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008266 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 279 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
+|++.|+++.+.. +.+...+..+...+...|++++|...|+++.+
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555554444432 22344444444444444455555444444444
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=7.3e-13 Score=119.52 Aligned_cols=208 Identities=13% Similarity=-0.100 Sum_probs=146.5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008266 330 DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIID 409 (572)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 409 (572)
+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 45566777777888888888888888777653 335667777777788888888888888877765433 5667777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008266 410 GYGRC-GDLSNAFSIRDLMLSFGVSS-NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHI 487 (572)
Q Consensus 410 ~~~~~-g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 487 (572)
.+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 77778 88888888887777632223 256677777777777888888888777776532 2466777777777777888
Q ss_pred HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHH
Q 008266 488 HLALQLYDEMLRRGIT-PDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIP 543 (572)
Q Consensus 488 ~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 543 (572)
++|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+. .|+...
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~ 217 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHH
Confidence 88888887777643 3 45666666777777777777777777777654 344443
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1e-13 Score=126.98 Aligned_cols=203 Identities=14% Similarity=0.076 Sum_probs=141.4
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008266 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
......|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++.+..+ .+...+..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHH
Confidence 3455677888888888899999999888888753 44677888888888888888888888888887665 467778888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008266 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++++..+ .+...+..+...+...
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE----NDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHc
Confidence 888888888888888888887753 33667777788888888888888888888887654 6677778888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008266 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
|++++|++.|+++.+.. +.+..++..+...|...|++++|...++++.+.
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88888888888877664 445667777777788888888888888777765
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.7e-13 Score=125.50 Aligned_cols=201 Identities=14% Similarity=0.031 Sum_probs=137.5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008266 330 DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIID 409 (572)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 409 (572)
....|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 45566677777888888888888888887753 346777777888888888888888888888776443 6677777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008266 410 GYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHL 489 (572)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (572)
.+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888776543 3567777777888888888888888888776532 256677777888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008266 490 ALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 490 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
|...++++.+.. +.+..++..+..+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888888877653 445677778888888888888888888888776
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=2.8e-13 Score=134.80 Aligned_cols=280 Identities=17% Similarity=0.106 Sum_probs=155.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-CC
Q 008266 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI----VAYNVLINGFCLNGDISSAFAYFCQMLKR----GF-LP 329 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p 329 (572)
.....+..+...+...|++++|+..|+++.+.+ +.+. ..|..+...|...|++++|...+++..+. +. ..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 344555566777778888888888888777763 2232 35667777777778888888777776542 11 11
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHHcCC-----------------HHHHHH
Q 008266 330 DVITYNTLLNCLCKQGKLDEASHFYGVLSKTG-----VAPDQISYKTIIQGLCIHGD-----------------IVKARE 387 (572)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~ 387 (572)
....+..+...|...|++++|...+++..+.. .+....++..+...|...|+ +++|.+
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 23455566666677777777777666654421 01112344445555555555 444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008266 388 FLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV-SSNVFTFNALILAETRGGSIFDAFSLKKEMLLDG 466 (572)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 466 (572)
.+++..+.. . ..+. .....++..+...|...|++++|...+++..+..
T Consensus 205 ~~~~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 205 FYQENLKLM----------------------------R---DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHH----------------------------H---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------------H---HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 444432210 0 0000 0112345555555666666666666665554321
Q ss_pred CC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 008266 467 IF-PD----VFTYNLLIGASCNLGHIHLALQLYDEMLRRG----IT-PDIITYTELIKGHCARGNMKEAEEVFAKIQTL- 535 (572)
Q Consensus 467 ~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 535 (572)
.. ++ ...+..+...+...|++++|...+++..+.. .. ....++..+...|...|++++|.+.++++.+.
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00 01 2255566666667777777777766665421 00 11345666667777777777777777766543
Q ss_pred ---CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008266 536 ---GLAI-DHIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 536 ---g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
+..+ ...++..+...|.+.|++++|.+.+++.++.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 1235566666777777777777777776543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=3e-13 Score=134.20 Aligned_cols=278 Identities=15% Similarity=0.064 Sum_probs=163.6
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC----hhhHHHHHHHHHHcCChhHHHHHHHHHhhC----CCC-
Q 008266 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD----VLTHNYLVNELCKIGDLEKADHVIREMSEM----RPS- 185 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~- 185 (572)
+.....+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++..+. +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4556667778888888899999999999888763 223 356777888888889999888888876542 111
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHhCCC--------------------hh
Q 008266 186 PNCATYNAFITGYCRVNELDKALHLFSTMANNGI-RPN----RVTHNILVHALCKKGL--------------------LG 240 (572)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~ 240 (572)
....++..+...+...|++++|...+++...... .++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2245677777888888888888888887754310 011 3366667777777777 77
Q ss_pred HHHHHHHHHHhCCCC--CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCCHH
Q 008266 241 DAVKFLGEVLADDDG--KATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI-QTD----IVAYNVLINGFCLNGDIS 313 (572)
Q Consensus 241 ~a~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~ 313 (572)
+|.+.+++.+..... ..+....++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 777777766542100 0012344666677777777777777777766654210 011 225555666666666666
Q ss_pred HHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHHcCCHH
Q 008266 314 SAFAYFCQMLKR----GFLPD-VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA-PD----QISYKTIIQGLCIHGDIV 383 (572)
Q Consensus 314 ~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~ 383 (572)
+|...+++..+. +..+. ..++..+...+...|++++|...++...+.... .+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 666666665432 10000 334445555555556666655555554332100 00 233444444444455555
Q ss_pred HHHHHHHHHH
Q 008266 384 KAREFLLSML 393 (572)
Q Consensus 384 ~A~~~~~~~~ 393 (572)
+|.+.+++..
T Consensus 325 ~A~~~~~~al 334 (406)
T 3sf4_A 325 QAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444433
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=5.1e-13 Score=132.54 Aligned_cols=156 Identities=13% Similarity=-0.007 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CH
Q 008266 367 ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVV-PE----PHIWNVIIDGYGRCGDLSNAFSIRDLMLSF----GVSS-NV 436 (572)
Q Consensus 367 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~ 436 (572)
.++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +..+ ..
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 34555566666666666666666665532100 11 225566666666777777777666665432 1100 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 008266 437 FTFNALILAETRGGSIFDAFSLKKEMLLD----GIFP-DVFTYNLLIGASCNLGHIHLALQLYDEMLRR----GITP-DI 506 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 506 (572)
.++..+...|...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+. |..+ ..
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 45566666677777777777777666542 1011 1445666666777777777777777766542 1111 12
Q ss_pred HHHHHHHHHHHhcCCH
Q 008266 507 ITYTELIKGHCARGNM 522 (572)
Q Consensus 507 ~~~~~l~~~~~~~g~~ 522 (572)
.++..+...+...|+.
T Consensus 348 ~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHh
Confidence 4455566666655554
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=5.9e-13 Score=132.51 Aligned_cols=239 Identities=17% Similarity=0.116 Sum_probs=111.2
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCh----hhHHHHHHHHHHcCChhHHHHHHHHHhhCC-----CCCCHH
Q 008266 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV----LTHNYLVNELCKIGDLEKADHVIREMSEMR-----PSPNCA 189 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~ 189 (572)
..+..+...+...|++++|+..|+++.+.+ +.+. .++..+...|...|++++|...+++..+.. ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 344445555666666666666666666542 1122 345555555566666666666555554320 011223
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--CCCccHHHHHHH
Q 008266 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDG--KATSDVITSTIL 267 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~l 267 (572)
++..+...|...|++++|...+++. +..... ..+....++..+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~a-----------------------------------l~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERH-----------------------------------LTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------------------------------HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-----------------------------------HHHHHHhhchHHHHHHHHHH
Confidence 4444444444455555555544444 332000 000233445555
Q ss_pred HHHHHhcCC-----------------HHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008266 268 MDSYFKNGD-----------------KFQALALWNDMFQK----N-IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 268 ~~~~~~~g~-----------------~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
...|...|+ +++|++.+++..+. + .+....++..+...|...|++++|...+++..+.
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555555555 55555555444321 0 0112234555555566666666666666555432
Q ss_pred CCC-CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008266 326 GFL-PD----VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA-----PDQISYKTIIQGLCIHGDIVKAREFLLSML 393 (572)
Q Consensus 326 g~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 393 (572)
... ++ ...+..+...+...|++++|...++........ ....++..+...+...|++++|.+.+++..
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 100 01 124445555555566666665555554432100 012334444445555555555555555443
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=5.4e-13 Score=128.40 Aligned_cols=282 Identities=19% Similarity=0.134 Sum_probs=167.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-C
Q 008266 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD----IVAYNVLINGFCLNGDISSAFAYFCQMLKR----GFLP-D 330 (572)
Q Consensus 260 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~ 330 (572)
+...+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +..| .
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 34455556667777777777777777777653 222 345666677777777777777777765432 1111 1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHHcCC-------------HHHHHHHHHHH
Q 008266 331 VITYNTLLNCLCKQGKLDEASHFYGVLSKTGV-APD----QISYKTIIQGLCIHGD-------------IVKAREFLLSM 392 (572)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~-------------~~~A~~~~~~~ 392 (572)
...+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ .+++.+.
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 158 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA---- 158 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH----
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH----
Confidence 33455555566666666666666655443210 011 1233444444444444 0000000
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 008266 393 LEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF----GV-SSNVFTFNALILAETRGGSIFDAFSLKKEMLLD-- 465 (572)
Q Consensus 393 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-- 465 (572)
+++|...+++.... +. ......+..+...+...|++++|...+++..+.
T Consensus 159 ------------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 159 ------------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44444444443221 11 111335666667777777777777777776542
Q ss_pred --CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 008266 466 --GIF-PDVFTYNLLIGASCNLGHIHLALQLYDEMLRR----GITP-DIITYTELIKGHCARGNMKEAEEVFAKIQTL-- 535 (572)
Q Consensus 466 --~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-- 535 (572)
+.. .....+..+...+...|++++|...+++..+. +.++ ...++..+...|...|++++|.+.++++.+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 100 11336777788888888888888888887642 1111 1456778888888999999999998888654
Q ss_pred --CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008266 536 --GLAI-DHIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 536 --g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
+..+ ...++..+...|.+.|++++|.+.++++++.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1111 1336778888899999999999999988764
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=4.6e-12 Score=110.49 Aligned_cols=167 Identities=14% Similarity=0.035 Sum_probs=89.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008266 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALIL 444 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 444 (572)
+..+|..+...|...|++++|++.|++..+..+. ++..+..+..+|.+.|++++|...++........ +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 3445555566666666666666666665555433 4555555555555666666666555555543322 3444455555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008266 445 AETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKE 524 (572)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 524 (572)
.+...++++.|...+.+....... +...+..+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 555555555555555555543211 34455555555555555555555555555432 3344555555555555555555
Q ss_pred HHHHHHHHHHc
Q 008266 525 AEEVFAKIQTL 535 (572)
Q Consensus 525 A~~~~~~m~~~ 535 (572)
|.+.|+++.+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 55555555543
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=3.6e-12 Score=125.52 Aligned_cols=231 Identities=13% Similarity=-0.017 Sum_probs=154.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC------CCHHHHH
Q 008266 337 LLNCLCKQGKLDEASHFYGVLSKT----GVAP-DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVV------PEPHIWN 405 (572)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~ 405 (572)
....+...|++++|...++...+. +-.+ ...++..+...|...|++++|...+.+..+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344556677777777777776553 1111 2356666777777777777777777776642111 1134567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 008266 406 VIIDGYGRCGDLSNAFSIRDLMLSFGVS-SN----VFTFNALILAETRGGSIFDAFSLKKEMLLD----GI-FPDVFTYN 475 (572)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~ 475 (572)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777888888888888888776542110 11 246777888888888888888888887762 22 22366788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-hHHHHHH
Q 008266 476 LLIGASCNLGHIHLALQLYDEMLRR----GITPDIITYTELIKGHCARGN---MKEAEEVFAKIQTLGLAID-HIPFRIL 547 (572)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 547 (572)
.+...+.+.|++++|...+++..+. +-+.....+..+...+...|+ .++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888888899999999888887753 111122335667778888888 66666666655 33333 3356778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 008266 548 KKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
...|...|++++|.+.|++.++.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 88899999999999999988754
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=6.6e-12 Score=109.49 Aligned_cols=165 Identities=16% Similarity=0.085 Sum_probs=78.7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008266 153 VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHA 232 (572)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 232 (572)
+.+|..+...|.+.|++++|++.|++..+..| -+..+|..+..++.+.|++++|...++...... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 34444444445555555555555555444443 244444444455555555555555554444432 1133344444444
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 008266 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDI 312 (572)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 312 (572)
+...++++.|...+.++....+ .+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+...|.+.|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT----VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc----cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 4455555555555555544333 444445555555555555555555555544443 33444445555555555555
Q ss_pred HHHHHHHHHHHH
Q 008266 313 SSAFAYFCQMLK 324 (572)
Q Consensus 313 ~~a~~~~~~m~~ 324 (572)
++|++.|++..+
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555554444
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=8.2e-13 Score=127.10 Aligned_cols=204 Identities=16% Similarity=0.096 Sum_probs=118.1
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC----hhhHHHHHHHHHHcCChhHHHHHHHHHhhCC-----CCCCHH
Q 008266 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD----VLTHNYLVNELCKIGDLEKADHVIREMSEMR-----PSPNCA 189 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~ 189 (572)
..+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+.. ......
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345556677788888888888888887763 222 3566777788888888888888877765421 112245
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHhCCC--------------------hhHHHH
Q 008266 190 TYNAFITGYCRVNELDKALHLFSTMANNGI-RPN----RVTHNILVHALCKKGL--------------------LGDAVK 244 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~~a~~ 244 (572)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 666777777777888888877777654210 011 2356666666667777 666666
Q ss_pred HHHHHHhCCCC--CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhCCCHHHHHH
Q 008266 245 FLGEVLADDDG--KATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN-----IQTDIVAYNVLINGFCLNGDISSAFA 317 (572)
Q Consensus 245 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~ 317 (572)
.+++.+..... ..+....++..+...+...|++++|.+.+++..+.. ......++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66655432100 000223455556666666666666666666554321 00011244445555555555555555
Q ss_pred HHHHHH
Q 008266 318 YFCQML 323 (572)
Q Consensus 318 ~~~~m~ 323 (572)
.+++..
T Consensus 245 ~~~~al 250 (338)
T 3ro2_A 245 YYKKTL 250 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=5.8e-11 Score=112.92 Aligned_cols=236 Identities=14% Similarity=0.038 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHhC----CCH----HHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-------HcCCH-------HHHHHH
Q 008266 296 IVAYNVLINGFCLN----GDI----SSAFAYFCQMLKRGFLPDVITYNTLLNCLC-------KQGKL-------DEASHF 353 (572)
Q Consensus 296 ~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~A~~~ 353 (572)
...|...+..-.+. ++. ++|..+|++.... .+.+...|..++..+. +.|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44566666654443 233 5777888887765 2335666766666654 34765 788888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008266 354 YGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPH-IWNVIIDGYGRCGDLSNAFSIRDLMLSFGV 432 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 432 (572)
|++..+.-.+.+...|..++..+.+.|++++|.++|+++.+..+. +.. .|..++..+.+.|++++|..+|++..+..+
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 888877312334567778888888888888888888888875432 233 677777778888888888888888877543
Q ss_pred CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHH
Q 008266 433 SSNVFTFNALILAET-RGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRG-ITP--DIIT 508 (572)
Q Consensus 433 ~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~ 508 (572)
++...|........ ..|++++|..+|++..+.... +...|..++..+.+.|++++|..+|++..+.. ++| ....
T Consensus 166 -~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 166 -TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp -CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred -CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 23444443333322 357888888888877764322 56777777777788888888888888887752 344 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008266 509 YTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 509 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
|..++..+...|+.++|..+++++.+.
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777888888888888887775
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=4.5e-11 Score=113.70 Aligned_cols=217 Identities=10% Similarity=0.007 Sum_probs=130.2
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHH-------cCCh-------hHHHHHHHHHhh-CCCCCCHHHHHHHHHHHH
Q 008266 135 GTALWLRRKMIQKGTVPDVLTHNYLVNELCK-------IGDL-------EKADHVIREMSE-MRPSPNCATYNAFITGYC 199 (572)
Q Consensus 135 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~ 199 (572)
++|..+|++.+... +.++..|..++..+.. .|++ ++|..+|++..+ ..| .+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 56777777777652 4466677777766653 4665 677777777776 343 35566777777777
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCC-Hh-HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH-hcCC
Q 008266 200 RVNELDKALHLFSTMANNGIRPN-RV-THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF-KNGD 276 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~ 276 (572)
+.|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|+++++..+ .+...|...+.... ..|+
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR----TRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT----CCTHHHHHHHHHHHHTSCC
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHcCC
Confidence 777777777777777663 343 22 566666666677777777777777776554 33344433333222 2466
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCC--CHhHHHHHHHHHHHcCCHHHHHHH
Q 008266 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRG-FLP--DVITYNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~~~ll~~~~~~g~~~~A~~~ 353 (572)
.++|.++|++..+.. +.+...|..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666665542 3345556666666666666666666666666542 233 234455555555556666666666
Q ss_pred HHHHHhC
Q 008266 354 YGVLSKT 360 (572)
Q Consensus 354 ~~~~~~~ 360 (572)
++++.+.
T Consensus 264 ~~~a~~~ 270 (308)
T 2ond_A 264 EKRRFTA 270 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=8.6e-12 Score=122.83 Aligned_cols=231 Identities=11% Similarity=0.002 Sum_probs=119.4
Q ss_pred HHhCCChhhHHHHHHHHHhC--CCCCC--hhhHHHHHHH--HHHcCChhHHH-----------HHHHHHhhCCCCCCH--
Q 008266 128 LCLGGKIGTALWLRRKMIQK--GTVPD--VLTHNYLVNE--LCKIGDLEKAD-----------HVIREMSEMRPSPNC-- 188 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~--g~~~~--~~~~~~li~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~-- 188 (572)
+.+.+++++|..+.+++.+. ....+ ...|..++.. ..-.+.++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45678999999998887664 22123 2333333322 11223333333 555554331110010
Q ss_pred --HHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC---CC
Q 008266 189 --ATYNAFITGYCRVNELDKALHLFSTMANN----GIRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGK---AT 258 (572)
Q Consensus 189 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~ 258 (572)
..+......+...|++++|...|++..+. +-.+ ...++..+...+...|++++|...+.+.++..... .+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 01112445566677777777777777653 1111 23456667777777777777777777766532101 01
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-C
Q 008266 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNI-----QTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR----GF-L 328 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~ 328 (572)
....+++.+...|...|++++|++.|++..+... .....++..+...|...|++++|.+.+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 2244566666666777777777766666554210 001124555555666666666666666555441 11 1
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008266 329 PDVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 329 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 358 (572)
....++..+...+.+.|++++|...+++..
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 223344555555555555555555555443
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=5.3e-12 Score=127.71 Aligned_cols=212 Identities=14% Similarity=0.038 Sum_probs=172.3
Q ss_pred ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh-hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 008266 133 KIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDL-EKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLF 211 (572)
Q Consensus 133 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (572)
.++++++.++...... +.+...+..+...+...|++ ++|++.|++..+..| .+...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3667777787766542 34677888888999999999 999999999988776 46788999999999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhC---------CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc--------
Q 008266 212 STMANNGIRPNRVTHNILVHALCKK---------GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN-------- 274 (572)
Q Consensus 212 ~~m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 274 (572)
++..+. .|+...+..+...+... |++++|.+.++++++..+ .+...|..+..+|...
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV----LDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHhhcccc
Confidence 999875 56778888888888888 999999999999998775 7788888999998888
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 008266 275 GDKFQALALWNDMFQKNIQ---TDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEAS 351 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 351 (572)
|++++|++.|++..+.. + .+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.
T Consensus 235 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999998888764 3 477888888888888888888888888887753 234556777777777778777777
Q ss_pred HHH
Q 008266 352 HFY 354 (572)
Q Consensus 352 ~~~ 354 (572)
+.+
T Consensus 313 ~~~ 315 (474)
T 4abn_A 313 ESK 315 (474)
T ss_dssp HHT
T ss_pred HHh
Confidence 654
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=7.1e-12 Score=126.76 Aligned_cols=211 Identities=9% Similarity=-0.109 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 008266 312 ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL-DEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLL 390 (572)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 390 (572)
+++++..++..... .+.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444443332 122444555555555555555 55555555555432 2234455555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 008266 391 SMLEKSVVPEPHIWNVIIDGYGRC---------GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRG--------GSIF 453 (572)
Q Consensus 391 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--------g~~~ 453 (572)
+..+.. |+...+..+...+... |++++|...+++..+..+. +...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 555543 3344455555555555 5555555555555443221 344444455554444 4455
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008266 454 DAFSLKKEMLLDGIF--PDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEV 528 (572)
Q Consensus 454 ~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 528 (572)
+|...|++..+.... -+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554442110 134444444555555555555555555544431 22333444444444444444444443
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=8.1e-12 Score=118.84 Aligned_cols=241 Identities=15% Similarity=0.080 Sum_probs=172.1
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------C
Q 008266 330 DVITYNTLLNCLCKQGKLDEASHFYGVLSKT-------GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK------S 396 (572)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 396 (572)
+..++..+...+...|++++|..+++.+.+. ..+.....+..+...+...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888889999999999999999998773 22334577888999999999999999999998764 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 008266 397 -VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF------GVSS-NVFTFNALILAETRGGSIFDAFSLKKEMLLD--- 465 (572)
Q Consensus 397 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--- 465 (572)
.......+..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2224567888899999999999999999988764 2222 3456788889999999999999999998764
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 008266 466 ---GIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRR-------GITPDI-------ITYTELIKGHCARGNMKEAEE 527 (572)
Q Consensus 466 ---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~-------~~~~~l~~~~~~~g~~~~A~~ 527 (572)
+..|+ ..++..+...+...|++++|...++++.+. ...+.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 22333 557888899999999999999999998863 112222 122223333444556666666
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008266 528 VFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 528 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
.++...... +.+..++..++..|.+.|++++|.++|++.++..
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 777766541 2345678899999999999999999999998754
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=8.9e-12 Score=118.54 Aligned_cols=245 Identities=13% Similarity=0.092 Sum_probs=175.7
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhC-------CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhC-----
Q 008266 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQK-------GTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM----- 182 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 182 (572)
+.+..+|..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999999998873 22345677888999999999999999999988764
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC------CCCC-CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 008266 183 -R-PSPNCATYNAFITGYCRVNELDKALHLFSTMANN------GIRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 183 -~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 253 (572)
+ ......++..+...+...|++++|.+.+++..+. +-.| ....+..+...+...|++++|.+.+++++...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 2234668889999999999999999999998764 2222 34567888899999999999999999988751
Q ss_pred ----CCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCH-------HHHHHHHHHHHhCCCHHHH
Q 008266 254 ----DGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK-------NIQTDI-------VAYNVLINGFCLNGDISSA 315 (572)
Q Consensus 254 ----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~-------~~~~~li~~~~~~g~~~~a 315 (572)
....+....++..+...|...|++++|.+.++++.+. ...+.. ..+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 0011256678999999999999999999999998863 111111 1122223333444555566
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008266 316 FAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
...+...... .+.+..++..+...|.+.|++++|.+.+++..+.
T Consensus 264 ~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 264 GGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666665543 1334667888999999999999999999988763
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=1.1e-10 Score=114.56 Aligned_cols=230 Identities=13% Similarity=-0.024 Sum_probs=158.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----C-CCHHHHH
Q 008266 337 LLNCLCKQGKLDEASHFYGVLSKTGV-AP----DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV-----V-PEPHIWN 405 (572)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~-~~~~~~~ 405 (572)
....+...|++++|...+++..+... .+ ...++..+...|...|+++.|...+.+..+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677888888888877765311 11 234667777778888888888888877664211 1 1234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 008266 406 VIIDGYGRCGDLSNAFSIRDLMLSF----GVS-SNVFTFNALILAETRGGSIFDAFSLKKEMLL-----DGIFPDVFTYN 475 (572)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 475 (572)
.+...|...|++++|...+++..+. +.. ....++..+...|...|++++|...+++..+ .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7888888888888888888776542 111 1234677788888889999999999888876 4322 367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-hHHHHHH
Q 008266 476 LLIGASCNLGHIHLALQLYDEMLRR----GITPDIITYTELIKGHCARGN---MKEAEEVFAKIQTLGLAID-HIPFRIL 547 (572)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 547 (572)
.+...+.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|...+++ .+..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence 8888999999999999999988863 111123445666666777787 6666666665 322333 3356678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 008266 548 KKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
...|...|++++|...|+++++.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 88999999999999999988753
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=3.6e-10 Score=110.88 Aligned_cols=165 Identities=12% Similarity=0.024 Sum_probs=90.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-C-CCHHHHH
Q 008266 229 LVHALCKKGLLGDAVKFLGEVLADDDGK--ATSDVITSTILMDSYFKNGDKFQALALWNDMFQK----NI-Q-TDIVAYN 300 (572)
Q Consensus 229 ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~-~~~~~~~ 300 (572)
....+...|++++|...|++++...... .+....++..+...|...|+++.|+..+++..+. +. . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3444566777777777777776542211 0123456677777777777777777777766542 10 0 1234556
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHhhHH
Q 008266 301 VLINGFCLNGDISSAFAYFCQMLKR----GFLP-DVITYNTLLNCLCKQGKLDEASHFYGVLSK-----TGVAPDQISYK 370 (572)
Q Consensus 301 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 370 (572)
.+...|...|++++|.+.|.+..+. +..+ ...++..+...|...|++++|...+++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 6666677777777777776665542 1111 123445555556666666666666555544 21 11234444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 008266 371 TIIQGLCIHGDIVKAREFLLSMLE 394 (572)
Q Consensus 371 ~li~~~~~~g~~~~A~~~~~~~~~ 394 (572)
.+...+.+.|++++|...+++..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555555443
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=4.3e-10 Score=110.15 Aligned_cols=301 Identities=13% Similarity=0.010 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----Hh
Q 008266 262 ITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIV----AYNVLINGFCLNGDISSAFAYFCQMLKRGF-LPD----VI 332 (572)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~ 332 (572)
.........+...|++++|...+++........+.. +++.+...+...|++++|...+.+..+... .++ ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344556667788999999999999988764222222 456677788889999999999988775311 112 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CH
Q 008266 333 TYNTLLNCLCKQGKLDEASHFYGVLSKT----GVA--P-DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP----EP 401 (572)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~ 401 (572)
++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+..... ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3566777888999999999998887653 221 2 23456667788889999999999999887643221 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHH
Q 008266 402 HIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS-N-VFTFN----ALILAETRGGSIFDAFSLKKEMLLDGIFP---DVF 472 (572)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~----~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~ 472 (572)
.++..+...+...|++++|...+++.......+ + ..... ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 457778888889999999999998876531111 1 11111 23344778899999999988877543221 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHH
Q 008266 473 TYNLLIGASCNLGHIHLALQLYDEMLRR----GITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 547 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 547 (572)
.+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..... +. ...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~ 328 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGF 328 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccH
Confidence 4667778888899999999998887642 222233 366677788888999999999999988762 11 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 008266 548 KKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
...+...| +....++++++..
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHHHcc--HHHHHHHHHHHhC
Confidence 23344555 5666777776554
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=1e-09 Score=107.46 Aligned_cols=96 Identities=13% Similarity=0.003 Sum_probs=40.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCC----CCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHH
Q 008266 228 ILVHALCKKGLLGDAVKFLGEVLADD----DGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQ----TDIVAY 299 (572)
Q Consensus 228 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~ 299 (572)
.+...+...|++++|...+++.+... ....+.....+..+...+...|++++|...+++....... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 34444444555555555554443311 0000012333444444555555555555555544432100 012234
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Q 008266 300 NVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 300 ~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
..+...+...|++++|...+++..
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444555555555555555443
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=9.8e-11 Score=101.73 Aligned_cols=161 Identities=16% Similarity=0.054 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008266 405 NVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNL 484 (572)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 484 (572)
..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. ..+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 3334444444444444444444433221 133444444444444455555555444444331 11344444445555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 008266 485 GHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIH 564 (572)
Q Consensus 485 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (572)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555554431 3344445555555555555555555555555442 223344455555555555555555555
Q ss_pred HHHHh
Q 008266 565 QKWLL 569 (572)
Q Consensus 565 ~~~l~ 569 (572)
+++++
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=1.7e-10 Score=100.27 Aligned_cols=158 Identities=11% Similarity=0.036 Sum_probs=63.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC
Q 008266 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL 238 (572)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 238 (572)
+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC
Confidence 33333444444444444444333322 233334444444444444444444444443321 1123333344444444444
Q ss_pred hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 008266 239 LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAY 318 (572)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 318 (572)
+++|.+.++++....+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...
T Consensus 92 ~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 92 YDLAVPLLIKVAEANP----INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc----HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444444332 333344444444444444444444444444332 22333444444444444444444444
Q ss_pred HHHHH
Q 008266 319 FCQML 323 (572)
Q Consensus 319 ~~~m~ 323 (572)
+++..
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=8e-11 Score=123.92 Aligned_cols=166 Identities=14% Similarity=0.051 Sum_probs=111.6
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008266 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
++.+|+.|...|.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|+..|++..+..| .+..+|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45567777777777777777777777776652 33456677777777777777777777777766655 35666777777
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008266 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
++...|++++|++.|++..+.. +-+...|..+..++.+.|++++|++.|+++++..+ .+...+..+...+...|+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P----~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP----DFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHhhhhhHHHhccc
Confidence 7777777777777777766643 12455666677777777777777777777766554 556666667777777777
Q ss_pred HHHHHHHHHHHHh
Q 008266 277 KFQALALWNDMFQ 289 (572)
Q Consensus 277 ~~~A~~~~~~~~~ 289 (572)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776666666553
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=3.8e-10 Score=102.01 Aligned_cols=196 Identities=10% Similarity=-0.018 Sum_probs=158.3
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008266 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
.|+..|......+...|++++|+..|+..++..-+++...+..+..++...|++++|+..+++..+..|. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888999999999999999999999998753367788888999999999999999999999998763 778899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCH-------hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCc--cHHHHHH
Q 008266 196 TGYCRVNELDKALHLFSTMANNGIRPNR-------VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATS--DVITSTI 266 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~ 266 (572)
..+...|++++|.+.|++..+.. +.+. ..|..+...+...|++++|.+.|+++++..+ . +...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS----KKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC----HHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC----CcccHHHHHH
Confidence 99999999999999999998753 2244 4577888889999999999999999999765 6 6788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008266 267 LMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 267 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
+...|...|+ ..++++...+ ..+...|.... ....+.+++|+..|++..+.
T Consensus 159 l~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 159 LGVLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 9988876553 3445555443 33444454443 23456789999999999886
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=8.5e-11 Score=123.72 Aligned_cols=168 Identities=14% Similarity=0.063 Sum_probs=152.0
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH
Q 008266 150 VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNIL 229 (572)
Q Consensus 150 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 229 (572)
+.+..+++.|...|.+.|++++|++.|++..+..| -+..+|+.+..+|.+.|++++|++.|++..+.. +-+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34568899999999999999999999999999876 478899999999999999999999999998864 2257889999
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 008266 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (572)
Q Consensus 230 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (572)
..++...|++++|++.|+++++..+ .+..+|+.+...|.+.|++++|++.|++..+.. +-+...|..+...+...
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINP----AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhc
Confidence 9999999999999999999999776 789999999999999999999999999999876 56788999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 008266 310 GDISSAFAYFCQMLK 324 (572)
Q Consensus 310 g~~~~a~~~~~~m~~ 324 (572)
|++++|.+.+++..+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999998888764
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=4.3e-10 Score=101.68 Aligned_cols=197 Identities=11% Similarity=-0.032 Sum_probs=156.9
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008266 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILV 230 (572)
Q Consensus 151 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 230 (572)
.++..+......+.+.|++++|...|++..+..+.++...+..+..++...|++++|++.|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888999999999999999999999998775677888889999999999999999999999864 22567888999
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHH
Q 008266 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDV-------ITSTILMDSYFKNGDKFQALALWNDMFQKNIQT--DIVAYNV 301 (572)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 301 (572)
..+...|++++|.+.++++++..+ .+. ..|..+...+...|++++|++.|++..+.. +. +...|..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP----GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHH
Confidence 999999999999999999999776 455 668889999999999999999999999874 33 4567777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008266 302 LINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG 361 (572)
Q Consensus 302 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 361 (572)
+...|...| ...++++...+ ..+...|.... ....+.+++|...+++..+..
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 777776544 34455555543 22344444433 334566899999999998863
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=1.1e-10 Score=109.16 Aligned_cols=229 Identities=14% Similarity=0.059 Sum_probs=159.3
Q ss_pred HHcCCHHHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 008266 342 CKQGKLDEASHFYGVLSKT-------GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK------SV-VPEPHIWNVI 407 (572)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 407 (572)
...|++++|..++++..+. ..+....++..+...+...|++++|...++++.+. +. .....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777665542 22234677888999999999999999999998864 21 2245678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHH
Q 008266 408 IDGYGRCGDLSNAFSIRDLMLSF------GV-SSNVFTFNALILAETRGGSIFDAFSLKKEMLLD------GIFP-DVFT 473 (572)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~~~~~------~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~ 473 (572)
...|...|++++|...+++..+. .. +....++..+...|...|++++|..+++++.+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 224567888889999999999999999998864 1133 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCC-
Q 008266 474 YNLLIGASCNLGHIHLALQLYDEMLRR-------GITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQT----LG-LAI- 539 (572)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g-~~p- 539 (572)
+..+...+...|++++|...++++.+. ...+.. ..|..+...+...+....+.. +..+.. .+ ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 888999999999999999999998863 122222 344444444444333332222 222211 11 112
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008266 540 DHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
...++..+...|...|++++|.++|++.++..
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 34468889999999999999999999998764
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=1.1e-10 Score=109.06 Aligned_cols=230 Identities=14% Similarity=0.086 Sum_probs=150.9
Q ss_pred HhCCChhhHHHHHHHHHhC-------CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhC------CC-CCCHHHHHHH
Q 008266 129 CLGGKIGTALWLRRKMIQK-------GTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM------RP-SPNCATYNAF 194 (572)
Q Consensus 129 ~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 194 (572)
...|++++|+..|++.++. ..+....++..+...|...|++++|...+++..+. +. .....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665542 22234567778888888888888888888887654 11 2345678888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC------CC-CCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhC-----CCCCCCccHH
Q 008266 195 ITGYCRVNELDKALHLFSTMANN------GI-RPNRVTHNILVHALCKKGLLGDAVKFLGEVLAD-----DDGKATSDVI 262 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 262 (572)
...+...|++++|.+.|++.... .- +....++..+...+...|++++|...+++++.. +. ..+....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~ 170 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP-DDPNVAK 170 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 88888899999999888888654 11 223566778888889999999999999888775 11 1124577
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhCCCHH------HHHHHHHHHHHCCCC
Q 008266 263 TSTILMDSYFKNGDKFQALALWNDMFQK-------NIQT-DIVAYNVLINGFCLNGDIS------SAFAYFCQMLKRGFL 328 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~ 328 (572)
++..+...|...|++++|.+.+++..+. ...+ ....|..+...+...+... .+...+..... ..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 8888999999999999999999888753 1122 2233333333333333222 22222221111 112
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008266 329 PDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 329 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
....++..+...|...|++++|..++++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23456788889999999999999999987753
No 87
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.21 E-value=4.2e-08 Score=99.02 Aligned_cols=124 Identities=7% Similarity=-0.043 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008266 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN-LGHIHLALQLYDEMLRRGITPDIITYTELIKG 515 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 515 (572)
..|...+....+.++.+.|..+|+.. .. ...+...|......-.. .++++.|..+|+...+. .+-+...|...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 34555555555666777788888777 32 11233333322222222 23577788888877764 23334455666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008266 516 HCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 516 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
....|+.+.|..+|+++. .....|...+..-...|+.+.+..++++++
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677778888888877762 134556666666666788777777777765
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=9.5e-10 Score=103.55 Aligned_cols=174 Identities=10% Similarity=-0.014 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHHcCCHHHH
Q 008266 311 DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT----GVAPD-QISYKTIIQGLCIHGDIVKA 385 (572)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A 385 (572)
++++|...|.+. ...|...|++++|...|.+.... |-+++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666654 23456667777777776665442 21111 34566666666666666666
Q ss_pred HHHHHHHHhCCCCC-C----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 008266 386 REFLLSMLEKSVVP-E----PHIWNVIIDGYGRC-GDLSNAFSIRDLMLSFGVSS-N----VFTFNALILAETRGGSIFD 454 (572)
Q Consensus 386 ~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~ll~~~~~~g~~~~ 454 (572)
+..+++..+..... + ..++..+...|... |++++|...|++..+..... + ..+++.+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 66666655421100 0 12344444455443 55555555555443321000 0 1234444444445555555
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008266 455 AFSLKKEMLLDGIFPDV------FTYNLLIGASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 455 a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (572)
|...|++..+....... ..|..+..++...|++++|...|++..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555544443211111 1233344444444555555555444443
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=2.1e-08 Score=92.60 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=85.5
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008266 207 ALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWND 286 (572)
Q Consensus 207 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 286 (572)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..++.. .+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~--~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAE--GTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST--THHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc--CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555544433 3334444455555555566666666655555443211 3455555555566666666666666655
Q ss_pred HHhCCCCC-----CHHHHHHHHHHH--HhCC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008266 287 MFQKNIQT-----DIVAYNVLINGF--CLNG--DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVL 357 (572)
Q Consensus 287 ~~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 357 (572)
|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5543 23 133333333332 1122 556666666665443 233222233333555566666666665544
Q ss_pred HhCC---------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008266 358 SKTG---------VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (572)
Q Consensus 358 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (572)
.+.- -+.+..+...+|......|+ +|.++++++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3310 02233444344333334444 555555555554
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=3.9e-09 Score=85.91 Aligned_cols=131 Identities=19% Similarity=0.146 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008266 438 TFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC 517 (572)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 517 (572)
.|..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 345555666666677777777766665432 245566666666777777777777777766643 445566667777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008266 518 ARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 518 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
..|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7777777777777776652 2345566667777777777777777777776544
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=1.6e-08 Score=93.44 Aligned_cols=249 Identities=14% Similarity=0.042 Sum_probs=170.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 008266 268 MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL 347 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 347 (572)
++-..-.|.+..++.-...+.. ......-.-+.++|...|++... ..-.|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc--
Confidence 4555678999988874333221 12223334456888888877642 1223444344444433 3322
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008266 348 DEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV-VPEPHIWNVIIDGYGRCGDLSNAFSIRDL 426 (572)
Q Consensus 348 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (572)
|...+++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677788777654 45666667888889999999999999999877664 23667788889999999999999999999
Q ss_pred HHhCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008266 427 MLSFGVSS-----NVFTFNALILAE--TRGG--SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEM 497 (572)
Q Consensus 427 ~~~~~~~p-----~~~~~~~ll~~~--~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (572)
|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9874 35 355666666553 3334 899999999998765 355444445555888999999999999976
Q ss_pred HHC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008266 498 LRR-----G----ITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 498 ~~~-----g----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
.+. . -+.|..++..+|......|+ +|.++++++.+. .|+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 642 0 13456677566666666786 889999999986 56654
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=5.2e-09 Score=96.73 Aligned_cols=102 Identities=12% Similarity=0.115 Sum_probs=80.7
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC-CC-HH
Q 008266 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD---VLTHNYLVNELCKIGDLEKADHVIREMSEMRPS-PN-CA 189 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~ 189 (572)
+.+...+..+...+.+.|++++|+..|+.+++.. +.+ ..++..+..+|.+.|++++|...|++..+..|. |. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677788888899999999999999988863 223 567888888999999999999999998886552 22 45
Q ss_pred HHHHHHHHHHh--------cCCHhHHHHHHHHHHHC
Q 008266 190 TYNAFITGYCR--------VNELDKALHLFSTMANN 217 (572)
Q Consensus 190 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~ 217 (572)
++..+..++.. .|++++|...|++..+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 67777778888 88999999999988875
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=1.2e-08 Score=83.01 Aligned_cols=127 Identities=19% Similarity=0.279 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 008266 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (572)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 235 (572)
+..+...+...|++++|..+++++.+..+ .+...+..+...+...|++++|...++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 33444444444555555555544444332 233444444444444444444444444444332 1233334444444444
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008266 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
.|++++|.+.++++....+ .+...+..++..+...|++++|.+.++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444444444332 333344444444444444444444444433
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=1.8e-08 Score=93.01 Aligned_cols=103 Identities=9% Similarity=-0.017 Sum_probs=55.7
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CC-CHhHHH
Q 008266 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN--CATYNAFITGYCRVNELDKALHLFSTMANNGI-RP-NRVTHN 227 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~ 227 (572)
+...+..+...+.+.|++++|...|+++.+..|... ...+..+..++.+.|++++|+..|++..+... .| ....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 444555555566666666666666666665443211 44555555666666666666666666655321 11 123344
Q ss_pred HHHHHHHh--------CCChhHHHHHHHHHHhCCC
Q 008266 228 ILVHALCK--------KGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 228 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~~ 254 (572)
.+..++.. .|++++|...|+++++..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 45555555 5666666666666655444
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=7.1e-09 Score=97.54 Aligned_cols=135 Identities=8% Similarity=-0.100 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCC---CC--CHhHHHHHHHHHHhC-CChhHHHHHHHHHHhCCCCCCCc--cH
Q 008266 190 TYNAFITGYCRVNELDKALHLFSTMANNGI---RP--NRVTHNILVHALCKK-GLLGDAVKFLGEVLADDDGKATS--DV 261 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~--~~ 261 (572)
+|+.+..+|...|++++|+..|++...... .+ -..++..+...|... |++++|...|++.+...+....+ ..
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 444444444444444444444444432100 00 022444455555553 55555555555554432100000 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008266 262 ITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI------VAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
.++..+...+.+.|++++|+..|++..+....... ..|..+..++...|++++|...|++..+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555555555555555555555555554211111 1344445555555555555555555443
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=3e-09 Score=112.53 Aligned_cols=130 Identities=15% Similarity=0.040 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 008266 188 CATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTIL 267 (572)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 267 (572)
...+..+...+...|++++|++.|++..+.. +.+...|..+..++...|++++|.+.|+++++..+ .+...+..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~~~~~~~l 507 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP----GELAPKLAL 507 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST----TCSHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHHHH
Confidence 3444444444444555555555554444432 11334444444444455555555555555544433 334444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008266 268 MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
..+|.+.|++++ ++.|++..+.+ +.+...|..+...+.+.|++++|++.|++..+
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 455555555554 44554444433 23344444444555555555555555544443
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.02 E-value=1.2e-08 Score=90.52 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=38.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008266 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
+..++.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++++..+ .+..++..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA----DNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHH
Confidence 4455555555555555555555432 11344455555555555555555555555555443 444555555555443
Q ss_pred c
Q 008266 274 N 274 (572)
Q Consensus 274 ~ 274 (572)
.
T Consensus 135 ~ 135 (208)
T 3urz_A 135 T 135 (208)
T ss_dssp H
T ss_pred H
Confidence 3
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.02 E-value=1.7e-08 Score=89.64 Aligned_cols=132 Identities=14% Similarity=0.047 Sum_probs=85.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008266 228 ILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC 307 (572)
Q Consensus 228 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (572)
.+..++.+.|++++|...|+++++..+ .+...+..+...+...|++++|+..|++..+.. +.+..+|..+...|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAP----NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 367777888888888888888888665 677788888888888888888888888887765 456677777777765
Q ss_pred hCCC--HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh
Q 008266 308 LNGD--ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQIS 368 (572)
Q Consensus 308 ~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 368 (572)
..|. ...+...+..... ..|....+.....++...|++++|...|++..+. .|+...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 5543 3334444444321 1222223333444555667777777777777663 455433
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.00 E-value=1.6e-06 Score=87.46 Aligned_cols=123 Identities=11% Similarity=0.002 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008266 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETR-GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGAS 481 (572)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 481 (572)
.|...+....+.++.+.|..+|+.. +. ...+...|......-.. .++.+.|..+|+...+.-. -+...+...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 3444444444555566666666665 21 11223333222211111 2246666666666555321 1233344455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008266 482 CNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
...|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55666666666666652 234556666655555666666666666555
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=7.5e-08 Score=85.66 Aligned_cols=179 Identities=16% Similarity=0.141 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----CHhHHHHH
Q 008266 135 GTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN----ELDKALHL 210 (572)
Q Consensus 135 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 210 (572)
.+|.+.|++..+.| ++.++..+...|...+++++|...|++..+.+ +...+..+...|.. + ++++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677777777764 67778888888888888888888888887754 45667777777766 5 78888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh----cCCHHHHHH
Q 008266 211 FSTMANNGIRPNRVTHNILVHALCK----KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK----NGDKFQALA 282 (572)
Q Consensus 211 ~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 282 (572)
|++..+.| +...+..|...|.. .+++++|.+.|++..+.++.. ..+..+..|...|.. .++.++|+.
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD--AAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH--HHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc--chHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88887754 56677777777766 778888888888887765300 126777888888877 778888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHHCCC
Q 008266 283 LWNDMFQKNIQTDIVAYNVLINGFCLN-G-----DISSAFAYFCQMLKRGF 327 (572)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~ 327 (572)
.|++..+. ..+...+..|...|... | ++++|..+|++..+.|.
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88888776 23455666666666543 2 77888888887777653
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=1.4e-08 Score=95.17 Aligned_cols=167 Identities=11% Similarity=0.067 Sum_probs=121.5
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHH-
Q 008266 150 VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNI- 228 (572)
Q Consensus 150 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~- 228 (572)
+.+...+..+...+...|++++|...|++..+..| .+...+..+...+.+.|++++|...+++.... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 44556677777788888888888888888887766 36777888888888888888888888887654 344433222
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 008266 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQ-TDIVAYNVLINGFC 307 (572)
Q Consensus 229 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~ 307 (572)
....+...++.++|.+.+++.+...+ .+...+..+...+...|++++|++.|.++.+.... .+...+..++..+.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P----~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP----EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 22335566777778888888888665 77778888888888888888888888888776411 12567777888888
Q ss_pred hCCCHHHHHHHHHHHH
Q 008266 308 LNGDISSAFAYFCQML 323 (572)
Q Consensus 308 ~~g~~~~a~~~~~~m~ 323 (572)
..|+.++|...|++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 8888888877776654
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.96 E-value=9.7e-09 Score=88.48 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHH-HHh
Q 008266 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHA-LCK 235 (572)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~ 235 (572)
..+...+.+.|++++|...|++..+..| .+...+..+...+...|++++|+..|++..... |+...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 3344445555555555555555544433 244455555555555555555555555544321 222222111111 111
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHH
Q 008266 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQT-DIVAYNVLINGFCLNGDISS 314 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 314 (572)
.+...+|...+++.++..+ .+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 87 ~~~~~~a~~~~~~al~~~P----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANP----DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHTSCHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hcccchHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1222335566666665544 556666666666666666666666666666553211 23455666666666666666
Q ss_pred HHHHHHHHH
Q 008266 315 AFAYFCQML 323 (572)
Q Consensus 315 a~~~~~~m~ 323 (572)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=8.1e-08 Score=86.35 Aligned_cols=204 Identities=10% Similarity=-0.013 Sum_probs=116.3
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCC-CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH--HHHH
Q 008266 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGT-VP-DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNC--ATYN 192 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 192 (572)
+...+..+...+.+.|++++|+..|+++++..- .| ....+..+..+|.+.|++++|+..|+++.+..|.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566677778888888888888888887521 11 1356777788888888888888888888876654221 2344
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Q 008266 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (572)
.+..++...|.. .+ ..|..+...+...|+.++|...|+++++..+ .+..++.......
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P----~~~~a~~a~~~l~- 140 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYP----NSQYTTDATKRLV- 140 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCT----TCTTHHHHHHHHH-
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCc----CChhHHHHHHHHH-
Confidence 444444433210 11 1122233344456788888888888888765 2222222111100
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHHcCCHH
Q 008266 273 KNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD----VITYNTLLNCLCKQGKLD 348 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~ 348 (572)
.+...+. .....+...|.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|+.+
T Consensus 141 ---------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 141 ---------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp ---------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcH
Confidence 0000000 111234556677777777777777777652 22 235666777777777777
Q ss_pred HHHHHHHHHHhCC
Q 008266 349 EASHFYGVLSKTG 361 (572)
Q Consensus 349 ~A~~~~~~~~~~~ 361 (572)
+|.+.++.+...+
T Consensus 202 ~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 202 QAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhC
Confidence 7777777776653
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=2.2e-08 Score=93.85 Aligned_cols=166 Identities=12% Similarity=-0.039 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 008266 400 EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYN-LLI 478 (572)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li 478 (572)
+...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...++++... .|+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 4556667777888888888888888888775443 6677888888888888888888888887764 34543332 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCH
Q 008266 479 GASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKES 557 (572)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~ 557 (572)
..+...++.++|...+++..+.. +.+...+..+...|...|++++|.+.++++.+..... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33567778888888888888763 5567888889999999999999999999998863221 255788888999999999
Q ss_pred HHHHHHHHHHHh
Q 008266 558 DKARDIHQKWLL 569 (572)
Q Consensus 558 ~~A~~~~~~~l~ 569 (572)
++|...|++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999998888764
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=9.2e-09 Score=88.61 Aligned_cols=164 Identities=12% Similarity=0.026 Sum_probs=129.7
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH-H
Q 008266 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG-Y 198 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~ 198 (572)
.+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+..| +...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 46677888999999999999999987753 44678899999999999999999999999887665 44433332222 2
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008266 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
...+...+|...+++..+.. +-+...+..+...+...|++++|...|+++++..+.. .+...+..+...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA--QDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT--TTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--ChHHHHHHHHHHHHHhCCCC
Confidence 23333456788999988753 2257888999999999999999999999999987522 45678999999999999999
Q ss_pred HHHHHHHHHHh
Q 008266 279 QALALWNDMFQ 289 (572)
Q Consensus 279 ~A~~~~~~~~~ 289 (572)
+|...|++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999987653
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=5.9e-08 Score=87.26 Aligned_cols=165 Identities=11% Similarity=0.011 Sum_probs=82.3
Q ss_pred HHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCh----hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008266 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV----LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
...+..+...|.+.|++++|+..|+++++.. |+. .++..+..++.+.|.. .+ ..|..
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g~~~~~~~~~-----~~------------~~~~~ 101 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRGLTNMALDDS-----AL------------QGFFG 101 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHHHHHHhhhhh-----hh------------hhhhc
Confidence 4578889999999999999999999999863 332 2455555556543211 00 11222
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Q 008266 194 FITGYCRVNELDKALHLFSTMANNGIRPNR-VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (572)
+...+...|++++|...|+++.+. .|+. ..+..... +..+.. ........+...|.
T Consensus 102 ~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~--------------l~~~~~-------~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 102 VDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR--------------LVFLKD-------RLAKYEYSVAEYYT 158 (225)
T ss_dssp ------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH--------------HHHHHH-------HHHHHHHHHHHHHH
T ss_pred cchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH--------------HHHHHH-------HHHHHHHHHHHHHH
Confidence 223334456666666666666654 2222 22211100 000000 00111123445555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008266 273 KNGDKFQALALWNDMFQKNIQTD---IVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|.+.++.+...
T Consensus 159 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 5666666666666555542 111 134555555666666666666666655554
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.95 E-value=3.2e-09 Score=88.76 Aligned_cols=139 Identities=9% Similarity=0.020 Sum_probs=63.2
Q ss_pred hCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008266 130 LGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALH 209 (572)
Q Consensus 130 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (572)
..|++++|+..+....... +.+...+..+...|.+.|++++|++.|++..+..| .+..+|..+..++.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHH
Confidence 3445555555555444321 11233344444555555555555555555554443 244455555555555555555555
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHH-HHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008266 210 LFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKF-LGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 210 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
.|++..+.. +-+..++..+...+.+.|+.++|.+. ++++++..| .+..+|......+...|
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P----~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP----GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST----TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHHHhC
Confidence 555554432 11344444455555555554443332 344444333 34444444444443333
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.95 E-value=4e-09 Score=88.10 Aligned_cols=146 Identities=12% Similarity=-0.003 Sum_probs=111.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC
Q 008266 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL 238 (572)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 238 (572)
|...+...|++++|+..++......+ .+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 34455667888899888888876543 245566778888999999999999999988764 2367788888899999999
Q ss_pred hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 008266 239 LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALAL-WNDMFQKNIQTDIVAYNVLINGFCLNGD 311 (572)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (572)
+++|...|+++++..+ .+..++..+...|.+.|+.++|.+. +++..+.. |-++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNP----TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 9999999999998776 7788889999999999988776655 47777664 5567778777777776664
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=1.7e-07 Score=83.28 Aligned_cols=176 Identities=13% Similarity=-0.017 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 008266 349 EASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCG----DLSNAFSIR 424 (572)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 424 (572)
+|.+.|+...+.| +...+..+...|...+++++|++.|++..+.+ ++..+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 55556666666666666666666666666654 44555566666655 5 667777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 008266 425 DLMLSFGVSSNVFTFNALILAETR----GGSIFDAFSLKKEMLLDGIF-PDVFTYNLLIGASCN----LGHIHLALQLYD 495 (572)
Q Consensus 425 ~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~ 495 (572)
++..+.| +...+..|...|.. .+++++|..+|++..+.+.. .+...+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7666543 45556666666655 56777777777776665421 015566666666666 667777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 008266 496 EMLRRGITPDIITYTELIKGHCAR-G-----NMKEAEEVFAKIQTLG 536 (572)
Q Consensus 496 ~m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g 536 (572)
+..+. +.+...+..|...|... | +.++|.++|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77664 23444566666666543 2 6777777777777765
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=9.6e-09 Score=108.61 Aligned_cols=173 Identities=12% Similarity=-0.088 Sum_probs=101.7
Q ss_pred HHcCCHHHHHHHHHHHH--------hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008266 342 CKQGKLDEASHFYGVLS--------KTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR 413 (572)
Q Consensus 342 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 413 (572)
...|++++|.+.+++.. +. .+.+...+..+...+...|++++|++.++++.+.+.. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 55666666666666665 32 1234455666666666666666666666666665433 55566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008266 414 CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQL 493 (572)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 493 (572)
.|++++|...|++..+..+. +...|..+..++.+.|++++ .+.|++..+.+.. +...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666654332 45556666666666666666 6666666654322 455666666666666666666666
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 008266 494 YDEMLRRGITPD-IITYTELIKGHCARGN 521 (572)
Q Consensus 494 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 521 (572)
|+++.+. .|+ ...|..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 6666553 343 3455555555554443
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.93 E-value=7.6e-07 Score=83.09 Aligned_cols=217 Identities=14% Similarity=0.068 Sum_probs=135.6
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC--ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH----Hhc---CCHh
Q 008266 135 GTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG--DLEKADHVIREMSEMRPSPNCATYNAFITGY----CRV---NELD 205 (572)
Q Consensus 135 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~ 205 (572)
++|+.+++.++... +-+..+|+.-...+...| +++++++.++.+....|+ +..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 57778887777763 334556677667777777 778888888888777663 455666555444 444 6677
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChh--HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC------H
Q 008266 206 KALHLFSTMANNGIRPNRVTHNILVHALCKKGLLG--DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD------K 277 (572)
Q Consensus 206 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 277 (572)
+++++++.+.+.. +-+..+|+.-.-++.+.|.++ ++.+.++++++.++ .|..+|+.-...+...+. +
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~----~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL----KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhccccchhhhH
Confidence 7777777777654 236666766666666677766 77777777777665 677777766666666555 6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 008266 278 FQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISS-AFAYFCQMLKRG--FLPDVITYNTLLNCLCKQGKLDEASHFY 354 (572)
Q Consensus 278 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 354 (572)
+++++.++++.... +-|...|+.+...+.+.|+..+ +..+..++.+.+ -..+...+..+...+.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 66666666666554 4566666666666656555333 333444433321 1224455555556666666666666666
Q ss_pred HHHHh
Q 008266 355 GVLSK 359 (572)
Q Consensus 355 ~~~~~ 359 (572)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66554
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=3.5e-08 Score=102.40 Aligned_cols=154 Identities=11% Similarity=-0.063 Sum_probs=114.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008266 379 HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSL 458 (572)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 458 (572)
.|++++|.+.+++..+.... +...+..+...+...|++++|...+++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47888999999998876544 6778888999999999999999999999886543 678888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 008266 459 KKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCAR---GNMKEAEEVFAKIQTL 535 (572)
Q Consensus 459 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 535 (572)
+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.++++.+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998876422 57788889999999999999999999988763 45677888899999999 9999999999999887
Q ss_pred C
Q 008266 536 G 536 (572)
Q Consensus 536 g 536 (572)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.92 E-value=1e-06 Score=82.15 Aligned_cols=219 Identities=10% Similarity=-0.016 Sum_probs=149.6
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHH----HhC---CC
Q 008266 168 DLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN--ELDKALHLFSTMANNGIRPNRVTHNILVHAL----CKK---GL 238 (572)
Q Consensus 168 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~---g~ 238 (572)
..++|+.+++.+....| -+..+|+.--.++...| +++++++.++.+.....+ +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 34689999999998877 46778888888888888 999999999999876433 455566544444 444 78
Q ss_pred hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-----
Q 008266 239 LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF--QALALWNDMFQKNIQTDIVAYNVLINGFCLNGD----- 311 (572)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 311 (572)
+++++++++.+++..+ .+..+|+.-.-.+.+.|.++ ++++.++++.+.+ +.|...|+.-...+...+.
T Consensus 126 ~~~EL~~~~~~l~~~p----kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 126 PYREFDILEAMLSSDP----KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp THHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred HHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 8899999999988776 78888888888888888877 8888888888776 5677777766666666655
Q ss_pred -HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH-HHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCCHHHHHH
Q 008266 312 -ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDE-ASHFYGVLSKTG--VAPDQISYKTIIQGLCIHGDIVKARE 387 (572)
Q Consensus 312 -~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 387 (572)
++++++.++++.... +-|...|+.+-..+.+.|+... +..+...+...+ -+.+...+..+.+.|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 666777777666653 3355666666666666665333 334444443321 12244555556666666666666666
Q ss_pred HHHHHHh
Q 008266 388 FLLSMLE 394 (572)
Q Consensus 388 ~~~~~~~ 394 (572)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=3.4e-08 Score=102.45 Aligned_cols=154 Identities=11% Similarity=-0.002 Sum_probs=101.5
Q ss_pred CCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 008266 131 GGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHL 210 (572)
Q Consensus 131 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (572)
.|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++..+..+ .+...|..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367777777777776652 33566777777778888888888888888777665 3567777777788888888888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHH
Q 008266 211 FSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN---GDKFQALALWNDM 287 (572)
Q Consensus 211 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 287 (572)
|++..+.. +.+...+..+..++.+.|++++|.+.++++++..+ .+...+..+...+... |+.++|.+.+++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP----EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88777653 22566777777788888888888888888877665 5677777788888887 8888888888877
Q ss_pred HhCC
Q 008266 288 FQKN 291 (572)
Q Consensus 288 ~~~~ 291 (572)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 7664
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=5.6e-08 Score=92.09 Aligned_cols=124 Identities=10% Similarity=-0.057 Sum_probs=54.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHH
Q 008266 339 NCLCKQGKLDEASHFYGVLSKT----GVAP-DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV---VP--EPHIWNVII 408 (572)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li 408 (572)
..|...|++++|...+.+.... +-.+ -..+|+.+...|...|++++|+..+++..+... .+ ...++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666554432 1000 123445555555555555555555555443210 00 012344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008266 409 DGYGRCGDLSNAFSIRDLMLSFGVSS-----NVFTFNALILAETRGGSIFDAFSLKKEML 463 (572)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 463 (572)
..|.. |++++|...|++..+..... ...+++.+...|...|++++|...|++..
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444 55555555554443311000 02334444444444445555544444444
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.83 E-value=6.8e-07 Score=83.93 Aligned_cols=163 Identities=9% Similarity=-0.049 Sum_probs=116.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 008266 407 IIDGYGRCGDLSNAFSIRDLMLSFGV-SSNV----FTFNALILAETRGGSIFDAFSLKKEMLLDGIF-PD----VFTYNL 476 (572)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 476 (572)
.+..+...|++++|...++...+... .|+. ..+..+...+...|++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776322 2221 12334666667778888998888888874222 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hHHHH
Q 008266 477 LIGASCNLGHIHLALQLYDEMLR----R-GITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTL----GLAID-HIPFR 545 (572)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 545 (572)
+...|...|++++|...|+++.+ . +..+.. .+|..+...|.+.|++++|.+.+++..+. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999999988874 1 112222 47788899999999999999999888753 22222 45788
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHh
Q 008266 546 ILKKRYRRMKE-SDKARDIHQKWLL 569 (572)
Q Consensus 546 ~l~~~~~~~g~-~~~A~~~~~~~l~ 569 (572)
.++.++.+.|+ +++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999994 6999999998865
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.82 E-value=1.8e-07 Score=83.12 Aligned_cols=89 Identities=10% Similarity=-0.171 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008266 406 VIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLG 485 (572)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 485 (572)
.+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++..+... .+...|..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcc
Confidence 34444445555555555554432 23444555555555555555555555555444321 13444444455555555
Q ss_pred CHHHHHHHHHHHHH
Q 008266 486 HIHLALQLYDEMLR 499 (572)
Q Consensus 486 ~~~~A~~~~~~m~~ 499 (572)
++++|...|++..+
T Consensus 86 ~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 86 KYDLAIKDLKEALI 99 (213)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 55555555555444
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=2.4e-07 Score=87.75 Aligned_cols=161 Identities=9% Similarity=-0.049 Sum_probs=84.9
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCC---CC--CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CCCCccHHHHHHHHH
Q 008266 197 GYCRVNELDKALHLFSTMANNGI---RP--NRVTHNILVHALCKKGLLGDAVKFLGEVLADDD--GKATSDVITSTILMD 269 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 269 (572)
.|...|++++|...|.+...... .+ -..+|..+...|...|++++|...|++.+.... ........+++.+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455566666555555433210 00 123455555666666666666666665543211 010012355666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHH
Q 008266 270 SYFKNGDKFQALALWNDMFQKNI---QT--DIVAYNVLINGFCLNGDISSAFAYFCQMLKR----GFLPD-VITYNTLLN 339 (572)
Q Consensus 270 ~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~ 339 (572)
.|.. |++++|++.|++..+... .+ ...++..+...|.+.|++++|+..|++..+. +..+. ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6666 666666666666554210 00 1345666666666777777777776666542 11111 124455555
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 008266 340 CLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~ 358 (572)
.+...|++++|...|++..
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 6666677777777777666
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=6.6e-07 Score=79.39 Aligned_cols=92 Identities=14% Similarity=-0.010 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC
Q 008266 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK 236 (572)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 236 (572)
..+...+...|++++|...|++.. .|+...|..+...+...|++++|.+.|++..... +.+...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 344444555555555555555442 2344455555555555555555555555554432 22344444455555555
Q ss_pred CChhHHHHHHHHHHhCC
Q 008266 237 GLLGDAVKFLGEVLADD 253 (572)
Q Consensus 237 g~~~~a~~~~~~~~~~~ 253 (572)
|++++|.+.|+++++..
T Consensus 85 ~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQL 101 (213)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhC
Confidence 55555555555555443
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=1.7e-07 Score=75.35 Aligned_cols=97 Identities=13% Similarity=0.019 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008266 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGH 516 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 516 (572)
..+......|.+.|++++|++.|++.++.... +...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 45666677777777777777777777765322 56677777777777777777777777777653 44566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 008266 517 CARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 517 ~~~g~~~~A~~~~~~m~~~ 535 (572)
...|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777777775
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=2.6e-06 Score=79.90 Aligned_cols=166 Identities=8% Similarity=-0.025 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHH
Q 008266 404 WNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV-----FTFNALILAETRGGSIFDAFSLKKEMLLDGI---FPD--VFT 473 (572)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~p~--~~~ 473 (572)
+...+..+...|++++|...++...+....... ..+..+...+...|++++|...+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455566667777777666665553222111 1233344556667777777777777764311 111 446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC-hH
Q 008266 474 YNLLIGASCNLGHIHLALQLYDEMLRR--GITPD----IITYTELIKGHCARGNMKEAEEVFAKIQTLG----LAID-HI 542 (572)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~~ 542 (572)
|+.+...|...|++++|...++++.+. ..+.+ ..++..+...|...|++++|.+.+++..+.. .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777777788888888888888777621 01111 1467777788888888888888888776531 1111 45
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 008266 543 PFRILKKRYRRMKESDKA-RDIHQKWLL 569 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A-~~~~~~~l~ 569 (572)
+|..++..|.+.|+.++| ...+++.++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 677777788888888888 666777653
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=3.4e-07 Score=76.01 Aligned_cols=96 Identities=14% Similarity=0.020 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008266 438 TFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC 517 (572)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 517 (572)
.+..+...+.+.|++++|...|+++....+. +...|..+..++...|++++|+..|+++.+.. +.+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 3444444455555555555555555543211 34445555555555555555555555555432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 008266 518 ARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 518 ~~g~~~~A~~~~~~m~~~ 535 (572)
..|++++|.+.|+++.+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555544
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=3.8e-06 Score=78.80 Aligned_cols=164 Identities=12% Similarity=0.105 Sum_probs=104.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCC-CCCHh----HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCcc----HHH
Q 008266 193 AFITGYCRVNELDKALHLFSTMANNGI-RPNRV----THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSD----VIT 263 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~ 263 (572)
..+..+...|++++|..++++...... .|+.. .+..+...+...|++++|...+++++...... .+ ..+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--ccHHHHHHH
Confidence 345667788888888888888776421 22211 23345566666778888888888888743211 22 446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-Hh
Q 008266 264 STILMDSYFKNGDKFQALALWNDMFQK-----NIQT-DIVAYNVLINGFCLNGDISSAFAYFCQMLKR----GFLPD-VI 332 (572)
Q Consensus 264 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~ 332 (572)
++.+...|...|++++|+..|+++.+. +..+ ...+|..+...|.+.|++++|+..+++..+. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 788888888888888888888877631 1111 2236667777777778888877777766542 11122 45
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 008266 333 TYNTLLNCLCKQGK-LDEASHFYGVLS 358 (572)
Q Consensus 333 ~~~~ll~~~~~~g~-~~~A~~~~~~~~ 358 (572)
+|..+...+.+.|+ +++|.+.+++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 56666677777773 477776666554
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.70 E-value=9.3e-06 Score=76.57 Aligned_cols=173 Identities=13% Similarity=0.034 Sum_probs=122.7
Q ss_pred CCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC-ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-C-CHhHH
Q 008266 131 GGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG-DLEKADHVIREMSEMRPSPNCATYNAFITGYCRV-N-ELDKA 207 (572)
Q Consensus 131 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A 207 (572)
.+..++|+++++.++... +-+..+|+.--..+...| .+++++..++.+....| .+..+|+.-...+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHH
Confidence 344467888888888764 345566777777777777 48888888888888877 4777888777777766 6 78888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChh--------HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC---
Q 008266 208 LHLFSTMANNGIRPNRVTHNILVHALCKKGLLG--------DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD--- 276 (572)
Q Consensus 208 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 276 (572)
+++++.+.+... -|..+|+.-.-++.+.|.++ ++.+.++++++..+ .|..+|+.....+.+.+.
T Consensus 145 L~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp----~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 145 IEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG----RNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhcccccc
Confidence 888888887642 36666766555555555555 78888888888765 778888887777777765
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 008266 277 ----KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD 311 (572)
Q Consensus 277 ----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (572)
++++++.++++.... +-|...|+-+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 577777777777654 5566666665555555544
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.67 E-value=1.4e-05 Score=75.39 Aligned_cols=172 Identities=14% Similarity=0.100 Sum_probs=129.3
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC-C-ChhHHH
Q 008266 167 GDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN-ELDKALHLFSTMANNGIRPNRVTHNILVHALCKK-G-LLGDAV 243 (572)
Q Consensus 167 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g-~~~~a~ 243 (572)
+..++|+++++++....| -+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-...+... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 445689999999999887 47788888888888888 599999999999987533 677788777667666 6 889999
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC----
Q 008266 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF--------QALALWNDMFQKNIQTDIVAYNVLINGFCLNGD---- 311 (572)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 311 (572)
++++.+++..+ .+..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~dp----kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 146 EYIHGSLLPDP----KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHTSSCT----TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHhCC----CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 99999998776 78888887776666666555 8888888888776 5677788877777766665
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 008266 312 ---ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGK 346 (572)
Q Consensus 312 ---~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 346 (572)
++++++.++++.... +-|...|+.+-..+.+.|.
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 577777777777652 3355666655555555544
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.66 E-value=3.4e-07 Score=80.54 Aligned_cols=85 Identities=12% Similarity=-0.044 Sum_probs=35.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCH
Q 008266 378 IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS----FGVS-SNVFTFNALILAETRGGSI 452 (572)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~ll~~~~~~g~~ 452 (572)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++..+ .+.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 1112334445555555555555555555554433 1111 1123344444444444555
Q ss_pred HHHHHHHHHHH
Q 008266 453 FDAFSLKKEML 463 (572)
Q Consensus 453 ~~a~~~~~~m~ 463 (572)
++|...+++..
T Consensus 83 ~~A~~~~~~al 93 (203)
T 3gw4_A 83 DAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55544444433
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.66 E-value=6.4e-07 Score=71.97 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008266 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (572)
|......|.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|+..+++..+..| .+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence 3344444444444444444444443331 22333344444444444444444444444433332 233333334444444
Q ss_pred cCCHhHHHHHHHHHH
Q 008266 201 VNELDKALHLFSTMA 215 (572)
Q Consensus 201 ~g~~~~A~~~~~~m~ 215 (572)
.|++++|.+.|++..
T Consensus 94 ~~~~~~A~~~~~~al 108 (126)
T 4gco_A 94 MREWSKAQRAYEDAL 108 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 444444444444433
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.65 E-value=5e-07 Score=82.34 Aligned_cols=189 Identities=11% Similarity=-0.119 Sum_probs=107.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHH-------HHHHHHcCCHHHHHHHHHHHHhCCCC-----CC----------
Q 008266 343 KQGKLDEASHFYGVLSKTGVAPDQISYKTI-------IQGLCIHGDIVKAREFLLSMLEKSVV-----PE---------- 400 (572)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~-----~~---------- 400 (572)
..++...|.+.|.++.... +-....|..+ ...+...++..+++..+....+..+. .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777888887777753 2234556655 34444444455555555544431100 00
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHH
Q 008266 401 -----PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD--VFT 473 (572)
Q Consensus 401 -----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~ 473 (572)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 1223345556666777777777776665543 333244444456667777777777776444321 111 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008266 474 YNLLIGASCNLGHIHLALQLYDEMLRRGITPD--IITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55666667777777777777777664322133 235556666667777777777777777765
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=1.3e-06 Score=73.85 Aligned_cols=127 Identities=10% Similarity=-0.020 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008266 438 TFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC 517 (572)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 517 (572)
.+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 444555555566666666666666555321 145556666666666666666666666666542 334556666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 008266 518 ARGNMKEAEEVFAKIQTLGLAIDHIPFR--ILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 518 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
..|++++|.+.++++.+.. +.+...+. ..+..+...|++++|.+.+++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666666542 11333332 2233355566666666666654
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=1.2e-06 Score=74.00 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 008266 191 YNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (572)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (572)
+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++.+...+ .+...+..+...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~a~~ 90 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK----KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHHHHHHHHH
Confidence 3444444444555555555555444432 11344444444455555555555555555544433 344445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 008266 271 YFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~ 290 (572)
+...|++++|...|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh
Confidence 55555555555555554443
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=1.1e-06 Score=69.97 Aligned_cols=95 Identities=18% Similarity=0.299 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 008266 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMD 269 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (572)
.|..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...++++....+ .+..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~ 85 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP----NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC----ccHHHHHHHHH
Confidence 33334444444444444444444443321 11233333444444444444444444444443322 33334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 008266 270 SYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 270 ~~~~~g~~~~A~~~~~~~~~ 289 (572)
.+...|++++|...++++.+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 44444444444444444433
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.63 E-value=2.3e-07 Score=86.46 Aligned_cols=99 Identities=12% Similarity=-0.043 Sum_probs=74.1
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008266 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+...+..+...+.+.|++++|+..|+..++.. +.+...|..+..+|.+.|++++|...+++..+..+ .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45567777777888888888888888877753 33667777777888888888888888888777665 46677777777
Q ss_pred HHHhcCCHhHHHHHHHHHHHC
Q 008266 197 GYCRVNELDKALHLFSTMANN 217 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~ 217 (572)
++...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888777653
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=2.3e-06 Score=80.30 Aligned_cols=164 Identities=9% Similarity=-0.010 Sum_probs=75.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC---CCC--HhHHHH
Q 008266 159 LVNELCKIGDLEKADHVIREMSEMRPSPNC-----ATYNAFITGYCRVNELDKALHLFSTMANNGI---RPN--RVTHNI 228 (572)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ 228 (572)
.+..+...|++++|.+.+++..+..+.... ..+..+...+...|++++|+..+++...... .+. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 334444555555555555544443221110 1122333444455556666665555543211 111 234555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHh---CCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHHHHH
Q 008266 229 LVHALCKKGLLGDAVKFLGEVLA---DDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN----IQT-DIVAYN 300 (572)
Q Consensus 229 ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~ 300 (572)
+...|...|++++|...+++++. ..+........++..+...|...|++++|++.+++..+.. ... -..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 55556666666666666655552 1110100012455555666666666666666665554321 000 134455
Q ss_pred HHHHHHHhCCCHHHH-HHHHHHH
Q 008266 301 VLINGFCLNGDISSA-FAYFCQM 322 (572)
Q Consensus 301 ~li~~~~~~g~~~~a-~~~~~~m 322 (572)
.+...|.+.|++++| ...+++.
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Confidence 555555666666655 4444443
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.63 E-value=1.8e-07 Score=77.72 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=86.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008266 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI 502 (572)
Q Consensus 423 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 502 (572)
.++++.+..+ .+...+..+...+...|++++|...|+........ +...|..+..++...|++++|+..|++..+..
T Consensus 9 ~~~~al~~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISS-DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCH-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 4555554321 24556777788888899999999999988875432 67788888888999999999999999988753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008266 503 TPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 503 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+.+...|..+..+|...|++++|.+.|++..+.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 446678888899999999999999999988875
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=3.1e-07 Score=85.65 Aligned_cols=96 Identities=15% Similarity=-0.009 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008266 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 303 (572)
..+..+...+.+.|++++|...|++++...+ .+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP----LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3444444555555555555555555555433 445555555555555555555555555555443 33444555555
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 008266 304 NGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~ 324 (572)
.+|...|++++|...|.+..+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555443
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=1.2e-06 Score=70.77 Aligned_cols=97 Identities=11% Similarity=0.034 Sum_probs=42.2
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008266 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+..+ .+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 33444444444445555555555554444431 22334444444444444444444444444444332 13334444444
Q ss_pred HHHhcCCHhHHHHHHHHHH
Q 008266 197 GYCRVNELDKALHLFSTMA 215 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~ 215 (572)
++...|++++|.+.|++..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444443
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=1.8e-06 Score=68.71 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=49.0
Q ss_pred HHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008266 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
...|..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+..+ .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 3445555555555555555555555555432 22344455555555555555555555555544433 234444444455
Q ss_pred HHhcCCHhHHHHHHHHHHH
Q 008266 198 YCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~ 216 (572)
+...|++++|...|+++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 5555555555555554444
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.59 E-value=5.8e-07 Score=74.60 Aligned_cols=94 Identities=16% Similarity=-0.017 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008266 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 305 (572)
+..+...+.+.|++++|...|++++...+ .+...|..+..+|...|++++|++.|++..+.. +.++..|..+..+
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P----~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDF----YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 34444444444555555555554444433 444444445555555555555555555444443 2334444444445
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 008266 306 FCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~ 324 (572)
|...|++++|...|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554444
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.59 E-value=1.1e-06 Score=84.15 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 008266 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 551 (572)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 551 (572)
..|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+...+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 556666666666666666666666666542 3455666666666666666666666666666652 22444566666666
Q ss_pred HhcCCHHHH-HHHHHHHH
Q 008266 552 RRMKESDKA-RDIHQKWL 568 (572)
Q Consensus 552 ~~~g~~~~A-~~~~~~~l 568 (572)
.+.|+.++| ...|++|+
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666 44555554
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=9e-07 Score=77.73 Aligned_cols=135 Identities=10% Similarity=-0.068 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--CC
Q 008266 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDD--GKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK----NIQ--TD 295 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~ 295 (572)
.++..+...+...|++++|...+++.+.... ...+....++..+...+...|++++|.+.+++..+. +-. ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444445555555554444443100 000023344555555555555555555555544432 100 11
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008266 296 IVAYNVLINGFCLNGDISSAFAYFCQMLKR----GFLP-DVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 358 (572)
...+..+...+...|++++|...+++..+. +... -..++..+...+...|++++|...+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 233444555555555555555555554421 1000 01223444555555555555555555443
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.57 E-value=1.5e-06 Score=70.13 Aligned_cols=96 Identities=18% Similarity=0.073 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008266 154 LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHAL 233 (572)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 233 (572)
..+..+...+.+.|++++|...+++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 3344444444444444444444444444332 233444444444444444444444444444321 11233344444444
Q ss_pred HhCCChhHHHHHHHHHHh
Q 008266 234 CKKGLLGDAVKFLGEVLA 251 (572)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~ 251 (572)
...|++++|.+.|++.++
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 444444444444444443
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=1.5e-06 Score=79.26 Aligned_cols=126 Identities=10% Similarity=-0.107 Sum_probs=59.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 008266 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQT--DIVAYNVLINGF 306 (572)
Q Consensus 229 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~ 306 (572)
+...+...|++++|.++|+.+...++ .+. ....+...+.+.+++++|+..|+...... .| ....+..+..++
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p----~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGS----EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTC----HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC----chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 33445555555555555555544332 223 44444445555555555555555333211 01 012344455555
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008266 307 CLNGDISSAFAYFCQMLKRGFLPD--VITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
...|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555555555555555543221132 123333444455555555555555555553
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.54 E-value=8.1e-07 Score=76.24 Aligned_cols=118 Identities=14% Similarity=0.215 Sum_probs=51.6
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHH-HHhCCCh--hHHH
Q 008266 167 GDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHA-LCKKGLL--GDAV 243 (572)
Q Consensus 167 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~--~~a~ 243 (572)
|++++|...+++..+..| .+...|..+...+...|++++|...|++..... +.+...+..+..+ +...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 444444444444444333 233444444444444444444444444444332 1133334444444 3344444 5555
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008266 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
..+++++...+ .+...+..+...|...|++++|...|+++.+.
T Consensus 102 ~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALALDS----NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC----CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55555444333 33444444555555555555555555554443
No 144
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.54 E-value=6.6e-05 Score=70.42 Aligned_cols=186 Identities=12% Similarity=0.073 Sum_probs=95.0
Q ss_pred hCCCHH-HHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 008266 308 LNGDIS-SAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGK----------LDEASHFYGVLSKTGVAPDQISYKTIIQG 375 (572)
Q Consensus 308 ~~g~~~-~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 375 (572)
+.|.++ +|+++++.+... .|+ ...|+.--..+...+. +++++.+++.+.... +-+..+|+.-.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445443 677777777764 333 3334332222222222 455666666665542 2355555555555
Q ss_pred HHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 008266 376 LCIHG--DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGD-LSNAFSIRDLMLSFGVSSNVFTFNALILAETRG--- 449 (572)
Q Consensus 376 ~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--- 449 (572)
+...+ ++++++.++.++.+..+. +..+|+.-.-.+...|. ++++...++.+.+..+. |...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 55555 356666666666665544 55566555555555565 46666666666655443 555555554444333
Q ss_pred -----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHH
Q 008266 450 -----------GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNL-----------GHIHLALQLYDEMLR 499 (572)
Q Consensus 450 -----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~ 499 (572)
+.++++++.+.......+. |...|+.+-..+.+. +.++++++.++++.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 2345555555555543222 344444443333333 234455555555554
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=1.2e-06 Score=70.32 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=9.9
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHH
Q 008266 121 HVAVIRDLCLGGKIGTALWLRRKMI 145 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~ 145 (572)
|..+...+...|++++|...|++..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~ 39 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAI 39 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333333334444444444443333
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=2.3e-06 Score=68.73 Aligned_cols=60 Identities=13% Similarity=0.005 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008266 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
.+..+...+...|++++|.+.+++.+...+ .+...+..+...+...|++++|...|++..
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICIDP----AYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcCc----cCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333333334444444444444444433322 233333334444444444444444444333
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=1e-06 Score=75.55 Aligned_cols=120 Identities=10% Similarity=0.132 Sum_probs=83.0
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH-HHhcCCH-
Q 008266 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS-YFKNGDK- 277 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 277 (572)
..|++++|...+++..... +.+...+..+...+...|++++|...|++++...+ .+...+..+... +...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG----ENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTTTCC
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhcCCcc
Confidence 4567777777777776653 33566777777777778888888888887777654 566677777777 6677777
Q ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008266 278 -FQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 278 -~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
++|...+++..+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777777664 445666777777777777777777777777765
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=2.1e-06 Score=82.15 Aligned_cols=123 Identities=10% Similarity=-0.083 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC--------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 008266 153 VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN--------------CATYNAFITGYCRVNELDKALHLFSTMANNG 218 (572)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (572)
...+..+...+.+.|++++|...|++..+..+... ...|..+..++.+.|++++|+..|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44556666666666677777666666666544322 3455555555555555555555555555432
Q ss_pred CCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHH
Q 008266 219 IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (572)
Q Consensus 219 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 280 (572)
+.+...+..+..++...|++++|...|+++++..+ .+..++..+..++.+.|+.++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP----NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHH
Confidence 22444455555555555555555555555555443 4444555555555555555544
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.50 E-value=7.4e-07 Score=73.92 Aligned_cols=97 Identities=8% Similarity=-0.082 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 008266 188 CATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTIL 267 (572)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 267 (572)
...+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|++++...+ .+...+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p----~~~~~~~~l 95 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI----XEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCchHHHHH
Confidence 3344444555555555555555555554432 12444445555555555555555555555555443 344445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 008266 268 MDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
..+|...|++++|++.|++..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555444
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.48 E-value=1.6e-06 Score=69.72 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----hHHHH
Q 008266 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG--LAID----HIPFR 545 (572)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~ 545 (572)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++..+.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345556666666677777777776666642 3345666666666777777777777766666531 0111 12455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 008266 546 ILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
.++.++...|++++|++.|++.++.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666666777777777777766653
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=2.3e-06 Score=70.40 Aligned_cols=99 Identities=19% Similarity=0.115 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008266 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
+...+..+...+...|++++|...|+........ +...|..+..++...|++++|+..|++..+.. +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 3455666777888899999999999998876432 67788888899999999999999999998863 556678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 008266 515 GHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+|...|++++|.+.|+++.+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998876
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=4e-07 Score=79.87 Aligned_cols=86 Identities=14% Similarity=-0.064 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008266 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 303 (572)
..+..+..++...|++++|...+++++...+ .+...+..+..+|...|++++|++.|++..+.. +.+...+..+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 163 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK----NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHH
Confidence 3444555555555555555555555555443 445555555555555555555555555555442 23344444444
Q ss_pred HHHHhCCCHHH
Q 008266 304 NGFCLNGDISS 314 (572)
Q Consensus 304 ~~~~~~g~~~~ 314 (572)
..+...++.++
T Consensus 164 ~~~~~~~~~~~ 174 (198)
T 2fbn_A 164 LCVNKLKEARK 174 (198)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.43 E-value=4.9e-07 Score=79.34 Aligned_cols=130 Identities=15% Similarity=0.016 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008266 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIF-P--------------DVFTYNLLIGASCNLGHIHLALQLYDEMLRRG 501 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 501 (572)
..+..+...+...|++++|...|++..+.... | ....|..+..++...|++++|+..+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34445555566666666666666666553211 1 02566777777778888888888888877652
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 008266 502 ITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKAR-DIHQKWL 568 (572)
Q Consensus 502 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l 568 (572)
+.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|+.+++. ..+.+++
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777777888888888888888888877752 224556666777776666666655 4455444
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.43 E-value=0.00017 Score=67.61 Aligned_cols=173 Identities=10% Similarity=0.044 Sum_probs=116.9
Q ss_pred HHhCCChh-hHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC----------hhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008266 128 LCLGGKIG-TALWLRRKMIQKGTVPDVLTHNYLVNELCKIGD----------LEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 128 ~~~~g~~~-~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
..+.|.++ +|+.+++.++... |-+..+|+.--..+...+. +++++..++.+....| .+..+|+.-..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34556655 7888888888763 3344556554444333332 5778888888888776 47778887777
Q ss_pred HHHhcC--CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC-hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008266 197 GYCRVN--ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL-LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 197 ~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
.+.+.| .+++++++++.+.+... -|...|+.-.-++...|. ++++++.++.+++..+ .|..+|+.....+.+
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p----~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF----SNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHH
Confidence 777777 47888888888887653 367777777777777777 5888888888888776 777788777766665
Q ss_pred c--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008266 274 N--------------GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL 308 (572)
Q Consensus 274 ~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 308 (572)
. +.++++++.+....... +-|...|+-+-..+.+
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHS
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 5 34667777777776654 4555666544333333
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.41 E-value=5.7e-06 Score=66.23 Aligned_cols=92 Identities=16% Similarity=0.073 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008266 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (572)
|..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++..+..| .+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 3333344444444444444444433331 12333333344444444444444444444333332 123333333333333
Q ss_pred cCCHhHHHHHHHHH
Q 008266 201 VNELDKALHLFSTM 214 (572)
Q Consensus 201 ~g~~~~A~~~~~~m 214 (572)
.|++++|...|++.
T Consensus 85 ~~~~~~A~~~~~~a 98 (126)
T 3upv_A 85 VKEYASALETLDAA 98 (126)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHH
Confidence 34444444333333
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=1.7e-06 Score=71.22 Aligned_cols=97 Identities=12% Similarity=-0.045 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 008266 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (572)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (572)
..+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...|+.++...+ .+...+..+.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg 93 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI----NEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCTHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCcHHHHHHH
Confidence 344444455555555555555555555432 12444455555555555555555555555555443 4444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 008266 269 DSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+|...|++++|.+.|+...+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555555443
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.40 E-value=4.6e-06 Score=67.01 Aligned_cols=107 Identities=10% Similarity=-0.004 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 008266 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRG--ITPD----IITYT 510 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~ 510 (572)
..+..+...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|+..+++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 45566677777778888888888777765322 46677777778888888888888887776531 1111 13567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHH
Q 008266 511 ELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRI 546 (572)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 546 (572)
.+..++...|++++|++.|++..+. .||+.+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 7777888888888888888888775 466655443
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.40 E-value=4.3e-06 Score=70.66 Aligned_cols=100 Identities=12% Similarity=-0.057 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008266 434 SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELI 513 (572)
Q Consensus 434 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 513 (572)
.+...+..+...+...|++++|...|++..+.... +...|..+..+|...|++++|+..|++.++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35667888889999999999999999999886432 68888999999999999999999999999863 45678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 008266 514 KGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.+|...|++++|.+.|+++.+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999886
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=8.3e-06 Score=65.27 Aligned_cols=92 Identities=16% Similarity=0.017 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008266 227 NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGF 306 (572)
Q Consensus 227 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (572)
..+...+.+.|++++|...|++.++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+...+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAP----EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3333444444444444444444444332 334444444444444444444444444444432 22334444444444
Q ss_pred HhCCCHHHHHHHHHHHH
Q 008266 307 CLNGDISSAFAYFCQML 323 (572)
Q Consensus 307 ~~~g~~~~a~~~~~~m~ 323 (572)
...|++++|...|++..
T Consensus 83 ~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 83 IAVKEYASALETLDAAR 99 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 44444444444444443
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=5.5e-06 Score=67.35 Aligned_cols=100 Identities=10% Similarity=-0.070 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008266 434 SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELI 513 (572)
Q Consensus 434 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 513 (572)
.+...+..+...+...|++++|...|++....... +...|..+..++...|++++|...+++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 46778888889999999999999999998876432 57888888999999999999999999988863 45678888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 008266 514 KGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.+|...|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999988875
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=1.2e-05 Score=63.11 Aligned_cols=26 Identities=19% Similarity=-0.024 Sum_probs=10.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHh
Q 008266 226 HNILVHALCKKGLLGDAVKFLGEVLA 251 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 251 (572)
+..+..++...|++++|.+.+++.++
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333333333344444443333333
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=1.4e-05 Score=62.61 Aligned_cols=97 Identities=13% Similarity=-0.054 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 008266 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (572)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (572)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++++...+ .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a 79 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP----DWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc----ccHHHHHHHH
Confidence 445555555556666666666666655432 22445555555566666666666666666665443 4455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 008266 269 DSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
..+...|++++|.+.+++..+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHc
Confidence 6666666666666666666554
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.38 E-value=3.5e-06 Score=67.04 Aligned_cols=95 Identities=12% Similarity=0.034 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 008266 475 NLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRM 554 (572)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 554 (572)
..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..++++.+.. +.+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 345556667777777777777776642 3456667777777777777777777777777652 22455666677777777
Q ss_pred CCHHHHHHHHHHHHhcC
Q 008266 555 KESDKARDIHQKWLLRN 571 (572)
Q Consensus 555 g~~~~A~~~~~~~l~~~ 571 (572)
|++++|...++++++.+
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 77777777777776544
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=4e-06 Score=65.12 Aligned_cols=98 Identities=10% Similarity=0.054 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChHHHHHHHH
Q 008266 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI--DHIPFRILKK 549 (572)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~ 549 (572)
..+..+...+...|++++|...+++..+.. +.+...|..+...+...|++++|.+.++++.+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344455555556666666666666655542 3344555566666666666666666666666542 12 3445555666
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcC
Q 008266 550 RYRRM-KESDKARDIHQKWLLRN 571 (572)
Q Consensus 550 ~~~~~-g~~~~A~~~~~~~l~~~ 571 (572)
.+.+. |++++|.+.++++++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 66666 66666666666665543
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=7.8e-06 Score=69.02 Aligned_cols=98 Identities=8% Similarity=0.019 Sum_probs=50.3
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008266 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+...|..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++..+..+ .+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34445555555555555555555555555442 22444555555555555555555555555555443 23444555555
Q ss_pred HHHhcCCHhHHHHHHHHHHH
Q 008266 197 GYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~ 216 (572)
++...|++++|...|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 55555555555555555444
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=8.4e-06 Score=63.26 Aligned_cols=94 Identities=6% Similarity=-0.024 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 008266 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQT--DIVAYNVLI 303 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li 303 (572)
+..+...+...|++++|...++++++..+ .+...+..+...+...|++++|++.|++..+.. +. +...+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDP----EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 33344444444444444444444444332 334444444444444444444444444444432 22 334444444
Q ss_pred HHHHhC-CCHHHHHHHHHHHHH
Q 008266 304 NGFCLN-GDISSAFAYFCQMLK 324 (572)
Q Consensus 304 ~~~~~~-g~~~~a~~~~~~m~~ 324 (572)
..+... |++++|.+.+.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 444444 444444444444443
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=4e-05 Score=76.13 Aligned_cols=96 Identities=11% Similarity=-0.044 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-C-C--h
Q 008266 473 TYNLLIGASCNLGHIHLALQLYDEMLRR--GIT--P-DIITYTELIKGHCARGNMKEAEEVFAKIQTL--GLA-I-D--H 541 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~ 541 (572)
++..+...+...|++++|..+++++... +.. + ...++..++..|...|++++|..++++.... .+. | . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 4444555555555555555555544321 110 1 1234445555555555555555555544331 011 1 0 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008266 542 IPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
..+..++..+...|++++|...|.+.+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 223334444445555555555554443
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=8.3e-06 Score=65.36 Aligned_cols=112 Identities=9% Similarity=-0.016 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 008266 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRG--ITPD----IITYT 510 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~ 510 (572)
..+..+...+...|++++|...+++..... ..+...+..+...+...|++++|...++++.+.. ..++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455566666677777777777777766643 2246666677777777777777777777776532 0112 56677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 008266 511 ELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 551 (572)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 551 (572)
.+..++...|++++|.+.++++.+. .|+......+....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 7777788888888888888887775 34555554444443
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=1.7e-05 Score=64.30 Aligned_cols=93 Identities=15% Similarity=-0.005 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008266 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 304 (572)
.+..+...+...|++++|...|+.++...+ .+...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNP----LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCc----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 333333444444444444444444443332 333344444444444444444444444443332 223333444444
Q ss_pred HHHhCCCHHHHHHHHHHH
Q 008266 305 GFCLNGDISSAFAYFCQM 322 (572)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m 322 (572)
.+...|++++|...|.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 444444444444444433
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=3.3e-05 Score=63.48 Aligned_cols=98 Identities=13% Similarity=-0.004 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHH
Q 008266 187 NCATYNAFITGYCRVNELDKALHLFSTMANNGIRPN----RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVI 262 (572)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 262 (572)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|...+++.+...+ .+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~ 100 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG----GDVK 100 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS----CCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc----cCHH
Confidence 3445555555555555555555555555543 233 34455555555556666666666665555443 4455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008266 263 TSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+..+..++...|++++|...|++..+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555566666666666666555544
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=1e-05 Score=64.75 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHH
Q 008266 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI--QTD----IVAY 299 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 299 (572)
+..+...+...|++++|...+++++...+ .+...+..+...+...|++++|...+++...... .++ ..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 33344444444444444444444444332 3344444444444444444444444444433210 001 3334
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 008266 300 NVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 300 ~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
..+...+...|++++|.+.|++..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444444444
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=4.6e-05 Score=62.55 Aligned_cols=98 Identities=10% Similarity=-0.051 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008266 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD----VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYT 510 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 510 (572)
+...+..+...+...|++++|...|++..+. .|+ ...|..+...+...|++++|...+++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4566667777777777777777777777764 344 5667777777778888888888888777642 34566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 008266 511 ELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.+..++...|++++|.+.+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7788888888888888888888775
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=5.8e-06 Score=69.16 Aligned_cols=134 Identities=19% Similarity=0.101 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 008266 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIF-PD----VFTYNLLIGASCNLGHIHLALQLYDEMLRR----GITP-DI 506 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 506 (572)
.++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++..+. +-++ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34555566666666777776666665542100 11 235667777778888888888888877642 1111 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008266 507 ITYTELIKGHCARGNMKEAEEVFAKIQTL----GLAI-DHIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
..+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++.++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 46777888888888999888888887653 2111 1335677888888899999999999888653
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.20 E-value=2.8e-05 Score=62.25 Aligned_cols=99 Identities=15% Similarity=0.052 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 008266 440 NALILAETRGGSIFDAFSLKKEMLLDGIFPDV---FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPD---IITYTELI 513 (572)
Q Consensus 440 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~ 513 (572)
..+...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...|+++.+.. +.+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34566778889999999999998875322 22 467778888999999999999999988753 333 56788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008266 514 KGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
.++...|++++|...|+++.+. .|+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 8999999999999999999886 35544
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=0.00013 Score=72.49 Aligned_cols=199 Identities=14% Similarity=0.041 Sum_probs=116.4
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCC----------------hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC-C
Q 008266 125 IRDLCLGGKIGTALWLRRKMIQKGTVPD----------------VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSP-N 187 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 187 (572)
.+.+.+.|++++|++.|..+.+..-... ..++..++..|.+.|++++|.+.+..+....... +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567888999999999999887532111 1235667788888888888888877765422211 1
Q ss_pred H----HHHHHHHHHHHhcCCHhHHHHHHHHHHH----CCCCCC-HhHHHHHHHHHHhCCChhHHHHHHHHHHhC--CCCC
Q 008266 188 C----ATYNAFITGYCRVNELDKALHLFSTMAN----NGIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLAD--DDGK 256 (572)
Q Consensus 188 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~ 256 (572)
. ...+.+-..+...|++++|..+++.... .+..+. ..++..+...+...|++++|..+++++... ....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1222233333345777777777766643 222222 345666777777777777777777766542 1101
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008266 257 ATSDVITSTILMDSYFKNGDKFQALALWNDMFQK----NIQTD--IVAYNVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
.+....++..++..|...|++++|...+++.... +.++. ...+..+...+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1134556677777777777777777777665432 11111 1334444455556666666666665554
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.18 E-value=1.4e-05 Score=63.51 Aligned_cols=90 Identities=16% Similarity=0.051 Sum_probs=40.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008266 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|+++++..+ .+...+..+..++..
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP----KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHH
Confidence 3344444444444444444444432 11334444444444444444444444444444333 334444444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 008266 274 NGDKFQALALWNDMF 288 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~ 288 (572)
.|++++|+..+++..
T Consensus 98 ~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 98 EHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444444
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=2.6e-05 Score=78.06 Aligned_cols=132 Identities=11% Similarity=-0.011 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008266 400 EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN--------------VFTFNALILAETRGGSIFDAFSLKKEMLLD 465 (572)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 465 (572)
....+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677778888888888888888888876432211 456666667777777777777777776664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 008266 466 GIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEE-VFAKIQ 533 (572)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~ 533 (572)
... +...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|+.+++.+ .+.+|.
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 46666666777777777777777777766642 2334556666666666666665543 344443
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.10 E-value=7.6e-06 Score=82.32 Aligned_cols=117 Identities=11% Similarity=-0.009 Sum_probs=55.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008266 446 ETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEA 525 (572)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 525 (572)
+.+.|++++|.+.+++..+.... +...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555555543211 34555555555555555555555555555542 23345555555555555555555
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHH--HHhcCCHHHHHHHHH
Q 008266 526 EEVFAKIQTLGLAIDHIPFRILKKR--YRRMKESDKARDIHQ 565 (572)
Q Consensus 526 ~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 565 (572)
.+.++++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555541 1122233333333 445555555555554
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.10 E-value=2.9e-05 Score=63.80 Aligned_cols=93 Identities=11% Similarity=-0.061 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Q 008266 476 LLIGASCNLGHIHLALQLYDEMLRRGITPD--------I-----ITYTELIKGHCARGNMKEAEEVFAKIQTL-----GL 537 (572)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~ 537 (572)
.....+.+.|++++|+..|++.++. .|+ . ..|..+..++.+.|++++|+..+++.++. .+
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344444555555555555555542 222 1 25566666666666666666666666553 11
Q ss_pred CCC-hHHH----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008266 538 AID-HIPF----RILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 538 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
.|+ ...| ...+.++...|++++|+..|++.++.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 343 2345 56666666666666666666666543
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.09 E-value=5.2e-06 Score=65.55 Aligned_cols=87 Identities=14% Similarity=-0.016 Sum_probs=69.3
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008266 448 RGGSIFDAFSLKKEMLLDGI-FP-DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEA 525 (572)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 525 (572)
..|++++|+..|++..+.+. .| +...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35888999999999988531 13 36678888999999999999999999998863 55678888999999999999999
Q ss_pred HHHHHHHHHc
Q 008266 526 EEVFAKIQTL 535 (572)
Q Consensus 526 ~~~~~~m~~~ 535 (572)
.+.+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999886
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.09 E-value=9.9e-05 Score=58.94 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=8.9
Q ss_pred HHHHhCCChhhHHHHHHHHHh
Q 008266 126 RDLCLGGKIGTALWLRRKMIQ 146 (572)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~m~~ 146 (572)
..+.+.|++++|...|+.+.+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~ 30 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLE 30 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334444444444444444433
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.08 E-value=2.8e-05 Score=65.39 Aligned_cols=105 Identities=16% Similarity=0.062 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008266 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLD--------GI--------FP-DVFTYNLLIGASCNLGHIHLALQLYDEM 497 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------~~--------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (572)
....+......+.+.|++++|...|.+.... .. .| +...|..+..+|.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3556778888999999999999999998864 10 12 2467888899999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008266 498 LRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 498 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
++.. +.+...|..+..+|...|++++|...|++..+. .|+..
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 9863 556788999999999999999999999999987 45543
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.06 E-value=2.8e-05 Score=64.90 Aligned_cols=134 Identities=13% Similarity=0.040 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--CCCccHH
Q 008266 190 TYNAFITGYCRVNELDKALHLFSTMANNGIR-PN----RVTHNILVHALCKKGLLGDAVKFLGEVLADDDG--KATSDVI 262 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~ 262 (572)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++.+..... ..+....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4444555555555555555555554432100 01 124555555566666666666666655442110 0001134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008266 263 TSTILMDSYFKNGDKFQALALWNDMFQK----NI-QTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
.+..+...+...|++++|.+.+++..+. +. ......+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4555555666666666666665555432 10 0012233444444444555555555544433
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=1.2e-05 Score=76.89 Aligned_cols=149 Identities=14% Similarity=0.044 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008266 401 PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGA 480 (572)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 480 (572)
...+..+...+.+.|++++|...|++..... |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3445666667777777777777777766532 33221 122233333322211 1267788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hHHHHHHHHH-HHhcCCHH
Q 008266 481 SCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID-HIPFRILKKR-YRRMKESD 558 (572)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~-~~~~g~~~ 558 (572)
|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++.+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988753 456788889999999999999999999998775 443 4445555544 23456778
Q ss_pred HHHHHHHHHHhcC
Q 008266 559 KARDIHQKWLLRN 571 (572)
Q Consensus 559 ~A~~~~~~~l~~~ 571 (572)
++...|++|+..+
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 8888888887654
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.04 E-value=5.3e-05 Score=75.81 Aligned_cols=88 Identities=10% Similarity=-0.085 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008266 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 303 (572)
..|..+..++.+.|++++|+..+++++...+ .+...|..+..+|...|++++|+..|++..+.. +.+...+..+.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~ 392 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDS----ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3444455555555555555555555555443 444555555555555555555555555555443 23344444454
Q ss_pred HHHHhCCCHHHHH
Q 008266 304 NGFCLNGDISSAF 316 (572)
Q Consensus 304 ~~~~~~g~~~~a~ 316 (572)
..+.+.++.+++.
T Consensus 393 ~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 393 MCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444443
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=1.2e-05 Score=63.32 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=32.4
Q ss_pred CChhhHHHHHHHHHhCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008266 132 GKIGTALWLRRKMIQKG--TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALH 209 (572)
Q Consensus 132 g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (572)
|++++|+..|++.++.+ -+.+..++..+...|.+.|++++|+..|++..+..|. +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444432 1122233344444444444444444444444443331 23334444444444444444444
Q ss_pred HHHHHH
Q 008266 210 LFSTMA 215 (572)
Q Consensus 210 ~~~~m~ 215 (572)
.|++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.01 E-value=9.8e-05 Score=61.93 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008266 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 260 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
+..+|..+..+|.+.|++++|+..+++..+.+ +.+...|..+..+|...|++++|...|++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 44556666666666666666666666666554 445556666666666666666666666666554
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=1.8e-05 Score=79.54 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=75.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008266 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
..+.+.|++++|.+.|++..+.. +.+..++..+..++.+.|++++|.+.++++++..+ .+..++..+..+|...|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p----~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK----KYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT----TCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcC
Confidence 34445677777777777766642 22466677777777777777777777777777654 56677777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHH
Q 008266 276 DKFQALALWNDMFQKNIQTDIVAYNVLING--FCLNGDISSAFAYFC 320 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 320 (572)
++++|++.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777776653 2334445555444 666777777777776
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.95 E-value=8.3e-05 Score=71.93 Aligned_cols=97 Identities=12% Similarity=-0.036 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCC--------------C-CCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008266 190 TYNAFITGYCRVNELDKALHLFSTMANNG--------------I-RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
.|..+...+.+.|++++|++.|++..+.- . +.+...|..+..++.+.|++++|++.++++++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 35555566666666666666666655410 0 11233444444555555555555555555554433
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008266 255 GKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+...+..+..+|...|++++|++.|++..+.
T Consensus 305 ----~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 305 ----SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44445555555555555555555555554443
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.93 E-value=0.00013 Score=70.64 Aligned_cols=121 Identities=13% Similarity=-0.002 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHh----------------CCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008266 224 VTHNILVHALCKKGLLGDAVKFLGEVLA----------------DDDGKATSDVITSTILMDSYFKNGDKFQALALWNDM 287 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 287 (572)
..+..+...+.+.|++++|.+.|+++++ ..+ .+..+|..+..+|.+.|++++|++.+++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP----VALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH----HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3466777888899999999999998886 222 44556666666666667777777766666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 008266 288 FQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA 350 (572)
Q Consensus 288 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 350 (572)
.+.. +.+...|..+..+|...|++++|++.|++..+.. +.+...+..+...+...++.+++
T Consensus 300 l~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 300 LEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 6654 3455566666666666666666666666666542 12344444444444444444443
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.91 E-value=0.00046 Score=70.66 Aligned_cols=172 Identities=9% Similarity=-0.006 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 008266 382 IVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGD----------LSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG- 450 (572)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g- 450 (572)
.++|++.++++.+.++. +...|+.--.++...|+ ++++...++.+.+..++ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34567777777766544 45555555555555555 77777777777776544 6777777777777777
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 008266 451 -SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLG-HIHLALQLYDEMLRRGITPDIITYTELIKGHCAR--------- 519 (572)
Q Consensus 451 -~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--------- 519 (572)
+++++.+.++++.+.... |...|+.-...+.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 568888888888876544 6777777777777777 7888888888887753 45667777776666653
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Q 008266 520 -----GNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESD 558 (572)
Q Consensus 520 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 558 (572)
+.++++.+.++++.... +-|...|..+...+.+.++.+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45788888888888763 336677888877777766643
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.91 E-value=0.00044 Score=56.10 Aligned_cols=111 Identities=19% Similarity=0.010 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 008266 415 GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIHLA 490 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A 490 (572)
+++++|...|++..+.|. |+.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 467777888877777663 2333 5566666677777888887777754 56666677777766 6777888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 008266 491 LQLYDEMLRRGITPDIITYTELIKGHCA----RGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 491 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 536 (572)
...|++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888777754 56666777777777 677778888877777765
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.88 E-value=0.00078 Score=68.99 Aligned_cols=170 Identities=11% Similarity=0.025 Sum_probs=122.8
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC----------hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-
Q 008266 134 IGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGD----------LEKADHVIREMSEMRPSPNCATYNAFITGYCRVN- 202 (572)
Q Consensus 134 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 202 (572)
.++|++.++.++... +-+..+|+.--.++.+.|+ ++++++.++.+.+..| .+..+|+.-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccc
Confidence 356788888888763 3355667766666666666 7888888888888777 47778888888888888
Q ss_pred -CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc------
Q 008266 203 -ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG-LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN------ 274 (572)
Q Consensus 203 -~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 274 (572)
+++++++.++++.+.... +..+|+....++.+.| .++++.+.++++++..+ .+..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p----~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF----SNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC----CCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC----CCccHHHHHHHHHHhhcccccc
Confidence 668888888888876533 6777877777777778 78888888888888766 7788888777776663
Q ss_pred --------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 008266 275 --------GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD 311 (572)
Q Consensus 275 --------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (572)
+.++++++.+++..... +-+...|+.+-..+.+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 44567777777666654 4456666665555555554
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.84 E-value=0.00029 Score=57.80 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhC-------CCCCCCccHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 008266 225 THNILVHALCKKGLLGDAVKFLGEVLAD-------DDGKATSDVITS----TILMDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
.|..+..++.+.|++++|+..+++.++. .+ .+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p----d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ----DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS----THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC----chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5556666666666666666666666654 43 555566 6666666666666666666666654
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.80 E-value=5.6e-05 Score=72.25 Aligned_cols=94 Identities=11% Similarity=-0.042 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008266 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 304 (572)
.|..+..++.+.|++++|...+++++...+ .+...|..+..+|...|++++|+..|++..+.. +.+...+..+..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~ 306 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE----KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRA 306 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 455556666666666666666666666543 455666666666666666666666666655442 222333333332
Q ss_pred H-HHhCCCHHHHHHHHHHHH
Q 008266 305 G-FCLNGDISSAFAYFCQML 323 (572)
Q Consensus 305 ~-~~~~g~~~~a~~~~~~m~ 323 (572)
. ....+..+.+...|..|.
T Consensus 307 l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 307 LAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 2 122334444445555444
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.00097 Score=54.03 Aligned_cols=111 Identities=11% Similarity=-0.066 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 008266 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETR----GGSIFDA 455 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a 455 (572)
+++++|++.|++..+.+.. .. . +...|...+.+++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-TH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 3456666666666665522 22 2 5555555555666666666665543 44555555555555 5566666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 008266 456 FSLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIHLALQLYDEMLRRG 501 (572)
Q Consensus 456 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 501 (572)
.++|++..+.| +...+..|...|.. .+++++|...|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666543 44455555555555 566666666666666554
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.75 E-value=3.3e-05 Score=59.83 Aligned_cols=93 Identities=9% Similarity=-0.018 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------hH
Q 008266 470 DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID-------HI 542 (572)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 542 (572)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.++++.+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34556666677777777777777777776642 445666777777777777777777777777765 333 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 008266 543 PFRILKKRYRRMKESDKARDIHQ 565 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~ 565 (572)
.+..+..++...|+.++|.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 45555666666666655554443
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.72 E-value=0.00014 Score=56.92 Aligned_cols=99 Identities=15% Similarity=0.056 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008266 453 FDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKI 532 (572)
Q Consensus 453 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 532 (572)
++|...|++..+... .+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 357788888887543 267888899999999999999999999998863 456788899999999999999999999998
Q ss_pred HHcCC-CCChHHHHHHHHHHHh
Q 008266 533 QTLGL-AIDHIPFRILKKRYRR 553 (572)
Q Consensus 533 ~~~g~-~p~~~~~~~l~~~~~~ 553 (572)
.+... ..+......+...+.+
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHH
Confidence 87521 1233444444444443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.71 E-value=0.00024 Score=71.03 Aligned_cols=126 Identities=5% Similarity=-0.096 Sum_probs=71.1
Q ss_pred HHhcCCHhHHHHHHHHHHHCC---CCC----CHhHHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCCCCCccHHHHH
Q 008266 198 YCRVNELDKALHLFSTMANNG---IRP----NRVTHNILVHALCKKGLLGDAVKFLGEVLA-----DDDGKATSDVITST 265 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g---~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~ 265 (572)
+...|++++|..++++.++.. +.| ...+++.|..+|...|++++|..++++++. .|+ ..|....+++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~ 397 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH-NNAQLGMAVM 397 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 445677777777777665421 111 134566777777777777777777766654 233 2223445666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008266 266 ILMDSYFKNGDKFQALALWNDMFQK-----N--IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 266 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
.|...|...|++++|+.++++..+. | .+....+.+.+-.++...+.+++|..+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777666665431 2 111122334444455555556666666655543
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.71 E-value=0.00047 Score=68.90 Aligned_cols=61 Identities=8% Similarity=0.020 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008266 473 TYNLLIGASCNLGHIHLALQLYDEMLR-----RG-ITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
+++.|...|...|++++|..++++..+ .| -.|+. .+++.|...|..+|++++|+.+++++.
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444444555554444444432 11 01111 334444555555555555555544443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.58 E-value=0.00049 Score=53.60 Aligned_cols=77 Identities=19% Similarity=0.129 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008266 242 AVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQ 321 (572)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 321 (572)
|...|+++++..+ .+...+..+...|...|++++|+..|++..+.. +.+...|..+...|...|++++|...|++
T Consensus 4 a~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 4 ITERLEAMLAQGT----DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHTTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444333 344444455555555555555555555444432 23344444444444555555555555444
Q ss_pred HH
Q 008266 322 ML 323 (572)
Q Consensus 322 m~ 323 (572)
..
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00028 Score=54.39 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008266 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+..+...+...|++++|.+.|+++++..+ .+...+..+..++...|++++|++.+++..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP----QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344444444444555555555554444333 34444444444455555555555555444443
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.56 E-value=0.00074 Score=49.71 Aligned_cols=22 Identities=14% Similarity=0.395 Sum_probs=8.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHH
Q 008266 193 AFITGYCRVNELDKALHLFSTM 214 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m 214 (572)
.+...+...|++++|...|++.
T Consensus 14 ~la~~~~~~~~~~~A~~~~~~a 35 (91)
T 1na3_A 14 NLGNAYYKQGDYDEAIEYYQKA 35 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHH
Confidence 3333333333444444333333
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.56 E-value=0.00076 Score=49.63 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008266 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 304 (572)
.+..+...+...|++++|...+++.++..+ .+...+..+...+...|++++|.+.|++..+.. +.+...+..+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 444444555555555555555555555433 344455555555555555555555555554443 233444444444
Q ss_pred HH
Q 008266 305 GF 306 (572)
Q Consensus 305 ~~ 306 (572)
.+
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.49 E-value=0.00034 Score=57.27 Aligned_cols=96 Identities=11% Similarity=-0.020 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008266 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH----------IHLALQLYDEMLRRGITPDIITYTELIKGHCAR 519 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 519 (572)
+.+++|.+.++...+.... +...|..+..++...++ +++|+..|++.++.. +.+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 3455555555555554322 45555555555554443 346777777766642 33446666777777655
Q ss_pred C-----------CHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 008266 520 G-----------NMKEAEEVFAKIQTLGLAIDHIPFRILKK 549 (572)
Q Consensus 520 g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 549 (572)
| ++++|++.|+++.+. .|+...|...+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3 677777777777775 566555544433
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.45 E-value=0.00053 Score=51.92 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChHHHHHHH
Q 008266 470 DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG-LAIDHIPFRILK 548 (572)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~ 548 (572)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.+++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 56778888899999999999999999988863 4456788889999999999999999999887642 123455555555
Q ss_pred HHHHhcC
Q 008266 549 KRYRRMK 555 (572)
Q Consensus 549 ~~~~~~g 555 (572)
..+...+
T Consensus 85 ~~l~~~~ 91 (100)
T 3ma5_A 85 DAKLKAE 91 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 5554443
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.37 E-value=0.00042 Score=56.71 Aligned_cols=38 Identities=3% Similarity=-0.131 Sum_probs=17.2
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCh
Q 008266 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL 239 (572)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 239 (572)
.+.+++|.+.++...+.. +.+...|..+..++...+++
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~ 52 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQF 52 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhccc
Confidence 344455555555544432 12444444444444444443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.29 E-value=0.0012 Score=49.87 Aligned_cols=64 Identities=22% Similarity=0.116 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008266 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (572)
+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667777788888888888888888888775432 456777788888888888888888887765
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.07 E-value=0.0073 Score=56.88 Aligned_cols=143 Identities=9% Similarity=-0.011 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cC--CHHHHH---HHHHHHHh
Q 008266 398 VPEPHIWNVIIDGYGR--C---GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETR---GG--SIFDAF---SLKKEMLL 464 (572)
Q Consensus 398 ~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~g--~~~~a~---~~~~~m~~ 464 (572)
+.+...|...+.+... . .+..+|..+|++..+..+. ....|..+..+|.. .+ ...... ..++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4466777777765432 2 2346778888887775332 34455544444431 11 111111 11221111
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHH
Q 008266 465 D-GIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIP 543 (572)
Q Consensus 465 ~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 543 (572)
. ....+...|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1 113356667666666666677777777777777753 67666767777777777777777777777775 455555
Q ss_pred HH
Q 008266 544 FR 545 (572)
Q Consensus 544 ~~ 545 (572)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.02 E-value=0.0017 Score=63.68 Aligned_cols=88 Identities=9% Similarity=0.015 Sum_probs=53.4
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HHHHHHH
Q 008266 448 RGGSIFDAFSLKKEMLLD---GIFPD----VFTYNLLIGASCNLGHIHLALQLYDEMLR-----RG-ITPDI-ITYTELI 513 (572)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~~~~l~ 513 (572)
..|++++|..++++..+. -+.|+ ..+++.|...|...|++++|+.++++..+ .| -.|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 456677777777665531 11222 34566677777777777777777776653 12 12222 4566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 008266 514 KGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
..|..+|++++|+.+++++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 7777777777777777776664
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.01 E-value=0.013 Score=55.14 Aligned_cols=144 Identities=13% Similarity=-0.015 Sum_probs=96.6
Q ss_pred CCCCHhhHHHHHHHHHH--cC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C--CHHHH---HHHHHHHH
Q 008266 362 VAPDQISYKTIIQGLCI--HG---DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC---G--DLSNA---FSIRDLML 428 (572)
Q Consensus 362 ~~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g--~~~~A---~~~~~~~~ 428 (572)
.+.+...|...+.+... .+ +..+|..+|++..+..+. ....|..+.-+|... + ..... ...++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 45577788887776543 23 357889999999887544 445555554444311 1 11111 11222211
Q ss_pred h-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 008266 429 S-FGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDII 507 (572)
Q Consensus 429 ~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 507 (572)
. ...+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++..+. .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 1 1224577788888777777799999999999998864 78878888888888999999999999998874 67777
Q ss_pred HHH
Q 008266 508 TYT 510 (572)
Q Consensus 508 ~~~ 510 (572)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.00 E-value=0.0037 Score=50.51 Aligned_cols=87 Identities=11% Similarity=-0.004 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 008266 451 SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLG---HIHLALQLYDEMLRRGITP--DIITYTELIKGHCARGNMKEA 525 (572)
Q Consensus 451 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 525 (572)
....+.+-|.+....+. ++..+.-.+..++++.+ ++++++.++++..+.+ .| +...+..+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34556666666666554 56666667777777777 5567888888877753 24 345556677777888888888
Q ss_pred HHHHHHHHHcCCCCCh
Q 008266 526 EEVFAKIQTLGLAIDH 541 (572)
Q Consensus 526 ~~~~~~m~~~g~~p~~ 541 (572)
.+.++.+.+. .|+.
T Consensus 91 ~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHhc--CCCC
Confidence 8888888875 5644
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.93 E-value=0.0018 Score=48.62 Aligned_cols=57 Identities=23% Similarity=0.203 Sum_probs=35.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008266 478 IGASCNLGHIHLALQLYDEMLRRGITPDII-TYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
...+...|++++|...++++.+.. +.+.. .|..+..+|...|++++|.+.|+++.+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344556666777777776666542 33445 6666666666777777777777766665
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.87 E-value=0.0036 Score=61.46 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=70.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-H
Q 008266 442 LILAETRGGSIFDAFSLKKEMLLD---GIFPD----VFTYNLLIGASCNLGHIHLALQLYDEMLR-----RG-ITPDI-I 507 (572)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~ 507 (572)
.+..+...|++++|..++++..+. -+.|+ ..+++.|...|...|++++|+.+++++.+ .| -.|+. .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355566788999999999888753 12222 45778888888889999999999988774 22 12333 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008266 508 TYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+++.|...|...|++++|+.+++++.+.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6788888999999999999999988876
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.86 E-value=0.0087 Score=44.28 Aligned_cols=66 Identities=9% Similarity=0.008 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008266 469 PDVFTYNLLIGASCNLGH---IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 469 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.|...+..+..++...++ .++|..++++..+.. +-+......+...+...|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 466777777777765544 688999999888863 556677888888888999999999999998886
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.84 E-value=0.0067 Score=59.49 Aligned_cols=87 Identities=7% Similarity=-0.074 Sum_probs=44.2
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHH
Q 008266 413 RCGDLSNAFSIRDLMLSF---GVSSN----VFTFNALILAETRGGSIFDAFSLKKEMLLD-----G-IFPD-VFTYNLLI 478 (572)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~li 478 (572)
..|++++|..++++..+. -..|+ ..+++.|..+|...|++++|..++++..+. | -.|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 345566666665554331 11111 234555566666666666666666655421 1 1222 34455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 008266 479 GASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~ 499 (572)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 666666666666666655543
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.72 E-value=0.11 Score=55.77 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=23.1
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008266 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDM 287 (572)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 287 (572)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+
T Consensus 663 l~~~~~~~A~~~~~~~---------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE---------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh---------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555553221 34455555555555555555555555544
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.71 E-value=0.0042 Score=46.51 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=27.0
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008266 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVI-TSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+.+.|++++|.+.++++++..+ .+.. .+..+..+|...|++++|++.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEP----VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCS----STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34444555555555555554433 3344 4455555555555555555555555443
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.54 E-value=0.027 Score=41.58 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=44.0
Q ss_pred CCHhHHHHHHHHHHhCCC---hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008266 221 PNRVTHNILVHALCKKGL---LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 221 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
.++..+..+..++...++ .++|..++++.++.++ .++.....+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp----~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP----YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 355556666665544333 5677777777777665 666777777777777777777777777777653
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.51 E-value=0.031 Score=54.80 Aligned_cols=92 Identities=10% Similarity=-0.032 Sum_probs=46.4
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCC----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHH
Q 008266 232 ALCKKGLLGDAVKFLGEVLADDDG----KATSDVITSTILMDSYFKNGDKFQALALWNDMFQK-----N--IQTDIVAYN 300 (572)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~ 300 (572)
-+.+.|++++|+.++++.++.... ..+....+++.++..|...|++++|+.++++..+. | .+....+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344556666666666666543211 11122345556666666666666666665555431 1 111223455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Q 008266 301 VLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 301 ~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
.|...|...|++++|+.++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 55555555555555555555543
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.36 E-value=0.16 Score=54.65 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=22.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008266 377 CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLM 427 (572)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 427 (572)
...|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555553222 24445555555555555555555555544
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.35 E-value=0.024 Score=42.88 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008266 470 DVFTYNLLIGASCNLGHIHLALQLYDEMLRRG------ITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
+..-+-.+...+.+.|++..|...|+.+.+.- -.+....+..+..++.+.|+++.|...++++.+. .|+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCH
Confidence 45556678888999999999999999987631 1245678899999999999999999999999986 56543
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.02 E-value=0.11 Score=41.86 Aligned_cols=86 Identities=17% Similarity=0.040 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 008266 417 LSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG---SIFDAFSLKKEMLLDGIFP--DVFTYNLLIGASCNLGHIHLAL 491 (572)
Q Consensus 417 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 491 (572)
...+.+.|.+....+. ++..+...+..++++.+ +.++++.++++..+.+ .| +...+-.|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555444 46666666666677766 4557777777776653 23 2334445556667777777777
Q ss_pred HHHHHHHHCCCCCCH
Q 008266 492 QLYDEMLRRGITPDI 506 (572)
Q Consensus 492 ~~~~~m~~~g~~p~~ 506 (572)
+.++.+.+. .|+.
T Consensus 92 ~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 92 KYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHH--CTTC
T ss_pred HHHHHHHhc--CCCC
Confidence 777777763 4543
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.01 E-value=0.038 Score=42.85 Aligned_cols=84 Identities=11% Similarity=-0.047 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 008266 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHL---ALQLYDEMLRRGITP--DIITYTELIKGHCARGNMKE 524 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~ 524 (572)
.....+.+-|.+....|. |+..+--.+..++.+..+... ++.++++..+.+ .| .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 334445555554444333 455555556666666655444 666666665543 22 22333445556667777777
Q ss_pred HHHHHHHHHHc
Q 008266 525 AEEVFAKIQTL 535 (572)
Q Consensus 525 A~~~~~~m~~~ 535 (572)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776665
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.95 E-value=0.04 Score=41.64 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=47.0
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCC------CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCC
Q 008266 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKG------TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRP 184 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 184 (572)
.+...+..|...+.+.|++..|..+|+...+.- ..+....+..+..++.+.|+++.|...+++..+..|
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 345566778888888888888888888776531 123455666677777777777777777777766554
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.82 E-value=0.13 Score=40.92 Aligned_cols=31 Identities=6% Similarity=0.118 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008266 261 VITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
...|......-.++|+...|.+++......+
T Consensus 94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 94 AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 3344444444444444444444444444433
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.36 Score=39.98 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=22.6
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008266 164 CKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTM 214 (572)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 214 (572)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 23445555555555555555555555444
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.49 E-value=0.66 Score=36.14 Aligned_cols=138 Identities=13% Similarity=0.119 Sum_probs=68.8
Q ss_pred hCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008266 130 LGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALH 209 (572)
Q Consensus 130 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (572)
-.|..++..++..+.... .+..-+|-+|--....-+-+...++++.+-.. -|.. ..|+......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHHH
Confidence 345566666666655543 24444555554444444444444444443221 1110 2233333333
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008266 210 LFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 210 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
.+-.+- .+.......++.+...|+.++-.+++.+++.... +++...-.+..+|.+.|+..+|.+++.+.-+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~----~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNE----VSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CC----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCC----CChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 332221 1333444455566666666666666666554333 5566666666666666666666666666666
Q ss_pred CCC
Q 008266 290 KNI 292 (572)
Q Consensus 290 ~~~ 292 (572)
.|+
T Consensus 154 kG~ 156 (172)
T 1wy6_A 154 KGE 156 (172)
T ss_dssp TTC
T ss_pred hhh
Confidence 653
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.38 E-value=0.16 Score=45.83 Aligned_cols=86 Identities=12% Similarity=0.019 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CCHH
Q 008266 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFK-----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN-GDIS 313 (572)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~ 313 (572)
..|...++++++.++.- .+-..|..+...|.+ -|+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleLDP~~--~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDLWPSY--QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHCTTH--HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHhCCCc--ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 34555555555544311 234455566655555 256666666666665553111355555555555553 5666
Q ss_pred HHHHHHHHHHHCCC
Q 008266 314 SAFAYFCQMLKRGF 327 (572)
Q Consensus 314 ~a~~~~~~m~~~g~ 327 (572)
++.+.+++.+....
T Consensus 258 ~a~~~L~kAL~a~p 271 (301)
T 3u64_A 258 GFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHcCCC
Confidence 66666666655433
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.32 E-value=3.7 Score=43.80 Aligned_cols=267 Identities=11% Similarity=0.002 Sum_probs=145.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-------CCCHhHHHHHH
Q 008266 268 MDSYFKNGDKFQALALWNDMFQKN--IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF-------LPDVITYNTLL 338 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------~p~~~~~~~ll 338 (572)
.-+....|+.++++..+......+ -.+....-..+.-+....|..+++..++.......- .+....-..+.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 334566777777777776655421 011222333344456666766677777776654311 01111122222
Q ss_pred HHHHHcCC-HHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHh
Q 008266 339 NCLCKQGK-LDEASHFYGVLSKTGVAPDQISYK--TIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIID--GYGR 413 (572)
Q Consensus 339 ~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~ 413 (572)
-+++-.|. -+++.+.+..+....- +...... ++...+...|+.+....++..+.+.. +......+.. ++..
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 23332332 2455555555554321 1111122 22223445677777777777776642 3333333333 4447
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008266 414 CGDLSNAFSIRDLMLSFGVSSNVFTFN---ALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLA 490 (572)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (572)
.|+.+.+..+.+.+... ..|. .-|. .+.-+|+..|+.....++++.+... ...+......+.-++...|+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 537 YGRQELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTCGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CCChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHH
Confidence 78989888888888763 1222 2232 3334567778887777788888865 222344444444455567777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCChHHHH
Q 008266 491 LQLYDEMLRRGITPDIITYTELIKGHCARGNM-KEAEEVFAKIQTLGLAIDHIPFR 545 (572)
Q Consensus 491 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~ 545 (572)
.++++.+.+.+ .|.+..-..+.-+....|.. .+|...+..+.. .+|..+-.
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq 665 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQ 665 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHH
Confidence 88877666653 55555555555566666654 578888888865 34544433
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.30 E-value=0.0004 Score=66.70 Aligned_cols=215 Identities=14% Similarity=0.085 Sum_probs=115.7
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008266 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
|+..|..+|.+..+.|++++-++.+...++.. .++..=+.|+-+|++.++..+- ++.. ..||..-...+..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~el----Eefl---~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL----EEFI---NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTT----TSTT---SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHH----HHHH---cCCCcccHHHHHH
Confidence 44456777777777777777777776655542 2344445777777777776554 2222 2355555556666
Q ss_pred HHHhcCCHhHHHHHHHHHHHCC--------------------CCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 008266 197 GYCRVNELDKALHLFSTMANNG--------------------IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGK 256 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 256 (572)
-|...|.++.|.-+|..+.... -.-++.||..+-.+|...+++.-|...--.++-... .
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad-e 231 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD-E 231 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS-C
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH-H
Confidence 6666666666665555432110 022455666666666666666655444433333221 1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCC------
Q 008266 257 ATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR-GFLP------ 329 (572)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p------ 329 (572)
...++..|-..|.+++.+.+++.-.... ......|+-|.-.|++- ++++..+.++..-.+ +++-
T Consensus 232 -------L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE 302 (624)
T 3lvg_A 232 -------LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 302 (624)
T ss_dssp -------CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHT
T ss_pred -------HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1234555666777777777776665332 34555666665555543 455555544433222 1110
Q ss_pred CHhHHHHHHHHHHHcCCHHHH
Q 008266 330 DVITYNTLLNCLCKQGKLDEA 350 (572)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A 350 (572)
....|.-++-.|++-.+++.|
T Consensus 303 ~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp TTTCHHHHHHHHHHHTCHHHH
T ss_pred HHhhHHHHHHHHhcchhHHHH
Confidence 123345555555555555544
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.24 E-value=1.1 Score=37.14 Aligned_cols=100 Identities=12% Similarity=0.171 Sum_probs=53.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 008266 271 YFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA 350 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 350 (572)
....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34566666666665554 2455666666666666666666666655432 23344444555555555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 008266 351 SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLS 391 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 391 (572)
.++-+.....| -++.....+...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54444444332 123333344445666666666543
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.02 E-value=0.15 Score=46.02 Aligned_cols=109 Identities=11% Similarity=0.018 Sum_probs=80.9
Q ss_pred CHHhHHHHHHH-HHhC--CC------hhhHHHHHHHHHhCCCCCC---hhhHHHHHHHHHHc-----CChhHHHHHHHHH
Q 008266 117 DYRRHVAVIRD-LCLG--GK------IGTALWLRRKMIQKGTVPD---VLTHNYLVNELCKI-----GDLEKADHVIREM 179 (572)
Q Consensus 117 ~~~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~ 179 (572)
....|..++.+ +... |. ...|..++++.++. .|+ ...|..+...|.+. |+.++|.+.|++.
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 33467766653 3332 43 45666777777775 355 56889999999994 9999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHHCCCC--CCHhHHH
Q 008266 180 SEMRPSPNCATYNAFITGYCRV-NELDKALHLFSTMANNGIR--PNRVTHN 227 (572)
Q Consensus 180 ~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~--p~~~~~~ 227 (572)
++.+|.-+..++......+++. |+.+++.+.+++....... |+....+
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 9987755678888888999885 9999999999999987655 5544333
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.92 E-value=0.27 Score=39.14 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH-HHHHHHH------HHHhcCCHHHHHHHHHHHHHCC
Q 008266 435 NVFTFNALILAETRGGSI------FDAFSLKKEMLLDGIFPDVF-TYNLLIG------ASCNLGHIHLALQLYDEMLRRG 501 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~-~~~~li~------~~~~~g~~~~A~~~~~~m~~~g 501 (572)
|..+|-..+....+.|++ ++..++|++.... ++|+.. .|...+. .+...+++++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 444555555555555555 5555566655543 333310 1111111 1123478899999999987642
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 008266 502 ITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 551 (572)
Q Consensus 502 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 551 (572)
-.- ...|......-.++|+...|.+++.+....+.+| ...+...+..+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 222 7778888888889999999999999999876544 33455444443
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.81 E-value=1.1 Score=34.95 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=81.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008266 378 IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFS 457 (572)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 457 (572)
-.|.+++..++..+..... +..-||-+|--....-+-+-..++++.+-+. .| ....|++.....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHH
Confidence 3566666666666665532 3344554544444444545555555544331 11 123445555444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008266 458 LKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL 537 (572)
Q Consensus 458 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 537 (572)
.+-.+- .+.......++.+...|+-+.-.+++.++... .+|++.....+..+|.+-|+..+|.+++.++-+.|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 443322 24445566677777777777777777775443 367777777777888888888888888887777765
Q ss_pred C
Q 008266 538 A 538 (572)
Q Consensus 538 ~ 538 (572)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.22 E-value=0.48 Score=49.46 Aligned_cols=126 Identities=13% Similarity=0.050 Sum_probs=82.0
Q ss_pred HHHHHHHcCC-hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHC------CCCCC-H------
Q 008266 159 LVNELCKIGD-LEKADHVIREMSEMRPSPNCATYNAFITGYCRVN-ELDKALHLFSTMANN------GIRPN-R------ 223 (572)
Q Consensus 159 li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p~-~------ 223 (572)
++..+...|+ .+.|..+|+++....|..+......++..+...+ +--+|.+++.+..+. ...+. .
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 3333444555 5789999999988765433333333444333333 233555555554321 11211 1
Q ss_pred ----hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008266 224 ----VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 224 ----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
.....-...+...|+++.|+++-++.+...+ .+..+|..|..+|...|+++.|+-.++.+.
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP----seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL----DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc----hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1122224556778999999999999998665 889999999999999999999999998874
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.18 E-value=7.1 Score=41.71 Aligned_cols=260 Identities=11% Similarity=-0.051 Sum_probs=142.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------CCCHhhHHHHHHH
Q 008266 305 GFCLNGDISSAFAYFCQMLKRGFLPDV--ITYNTLLNCLCKQGKLDEASHFYGVLSKTGV-------APDQISYKTIIQG 375 (572)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~~ 375 (572)
+....|+.++++.+++.....+-..+. ..-..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 456678888887777665542111122 2223333445566666677777766554321 0111222233333
Q ss_pred HHHcCC-HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008266 376 LCIHGD-IVKAREFLLSMLEKSVVPEP--HIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSI 452 (572)
Q Consensus 376 ~~~~g~-~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 452 (572)
+.-.|. -+++.+.+..+...... .. ..--++...+...|+.+....++..+.+.. .-+..-...+.-++...|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 333332 34666777776654211 11 112233444567788888888888776642 11222233333445577899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008266 453 FDAFSLKKEMLLDGIFPDVFTYN--LLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFA 530 (572)
Q Consensus 453 ~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 530 (572)
+.+..+++.+... ..|....-. .+.-+|+..|+.....++++.+.+.. ..++.-...+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 9999998888764 222222222 34456778899888888999988742 3344444444445556777777777777
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 008266 531 KIQTLGLAIDHIPFRILKKRYRRMKES-DKARDIHQKWLL 569 (572)
Q Consensus 531 ~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~l~ 569 (572)
.+.+.+ .|...--..+.-+....|+. .+|...++.+..
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666653 33333222333344444443 678888887753
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.08 E-value=4.8 Score=39.38 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008266 275 GDKFQALALWNDMFQK-----NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
|++++|++.+-.+.+. +..........++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677777766555432 2334455566677777777777777666655443
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.91 E-value=0.23 Score=38.48 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=26.1
Q ss_pred CChhhHHHHHHHHHHcCChhH---HHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 008266 151 PDVLTHNYLVNELCKIGDLEK---ADHVIREMSEMR-PSPNCATYNAFITGYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 151 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (572)
++..+-..+..++.+..+..+ ++.+++.+.+.+ |.........+.-++.+.|++++|.+.++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444444443332 444444444432 111222233333344444444444444444443
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.48 E-value=1.3 Score=34.96 Aligned_cols=72 Identities=7% Similarity=-0.005 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 008266 468 FPDVFTYNLLIGASCNLGH---IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDH 541 (572)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 541 (572)
.|+..+--.+..++.+..+ ..+++.++++..+.+-.-.....-.|.-++.+.|++++|.++.+.+.+. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 5666666666777777654 4467778888776431112344455667788888888888888888876 5644
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.25 E-value=0.72 Score=35.91 Aligned_cols=75 Identities=8% Similarity=0.003 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008266 466 GIFPDVFTYNLLIGASCNLGH---IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
+-.|+..+--.+..++.+..+ ..+++.++++..+.+-.-....+-.|.-++.+.|++++|.++.+.+.+. .|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCH
Confidence 344555555556666666554 3457777777766531112344556667777888888888888777775 55443
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.03 E-value=6.7 Score=38.36 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008266 345 GKLDEASHFYGVLSKT-----GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLE 394 (572)
Q Consensus 345 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 394 (572)
|+++.|.+.+-.+.+. +..........++..+...|+++...+.+.-+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5667776666555432 2333455666777777777777777666655544
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.72 E-value=1.9 Score=41.46 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHhH
Q 008266 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK-----RGFLPDVIT 333 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 333 (572)
+...++..+...|++++++..+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556677778888888888887777654 56777888888888888888888888877654 377776554
No 244
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.48 E-value=2.4e-05 Score=74.90 Aligned_cols=264 Identities=12% Similarity=0.094 Sum_probs=162.3
Q ss_pred HHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008266 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
+..|..|..+..+.|++.+|+.-|- +. .|+..|..+|.+..+.|.+++-...+...++..-+|.+ =+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHH
Confidence 3469999999999999988876552 22 47778889999999999999998888777665444433 3578999
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCH
Q 008266 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDK 277 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 277 (572)
|++.++..+-.+++ -.||..-...+.+-|...|.++.|.-+|..+. -|..|...+.+.|++
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is------------N~akLAstLV~L~~y 186 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------------NFGRLASTLVHLGEY 186 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC------------CCTTTSSSSSSCSGG
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc------------cHHHHHHHHHHHHHH
Confidence 99999876654443 24677677788888889999988888875442 234444555666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008266 278 FQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVL 357 (572)
Q Consensus 278 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 357 (572)
..|.+.-++ .-++.||-.+-.+|...+.+.-|.-.--.++-. || -...++..|-..|.+++-..+++.-
T Consensus 187 q~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 655543222 235667777777777777666554433333311 11 1223455566677777776666665
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHhcCCHHHHH
Q 008266 358 SKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP-------EPHIWNVIIDGYGRCGDLSNAF 421 (572)
Q Consensus 358 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~ 421 (572)
... -......|+-|.-.|++- +.++..+.++....+=-.| ....|.-++-.|..-.+++.|.
T Consensus 256 lgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 256 LGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 532 234556666666555543 3344444333222211011 2233555555566555555544
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.53 E-value=1.4 Score=45.90 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=36.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008266 478 IGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKI 532 (572)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 532 (572)
.+.|...|+++.|+++-++.+.. .+.+..+|..|..+|...|+++.|+-.+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455667777777777777764 2444577777777777777777777766655
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.39 E-value=2.1 Score=41.15 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChHHH
Q 008266 475 NLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT-----LGLAIDHIPF 544 (572)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 544 (572)
..++..+...|++++|...+..+.... +.+...|..++.+|.+.|+..+|.+.|+++.+ .|+.|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345556666777777777766666542 44666777777777777777777777766543 3677766643
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.68 E-value=6.6 Score=28.75 Aligned_cols=45 Identities=4% Similarity=0.121 Sum_probs=21.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008266 490 ALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 490 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
..+-++.+....+.|++.+..+.+++|.+-+++.-|+++++-.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333333443444445555555555555555555555555544443
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.03 E-value=15 Score=41.05 Aligned_cols=195 Identities=15% Similarity=0.075 Sum_probs=115.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH--------------------
Q 008266 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN-------------------- 216 (572)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------------- 216 (572)
..++..+.+.+..+-+.++.... +.+...-..+..++...|++++|.+.|.+...
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555666667776665544433 12333334555666777777777777755411
Q ss_pred CC--CCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008266 217 NG--IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSD--VITSTILMDSYFKNGDKFQALALWNDMFQKNI 292 (572)
Q Consensus 217 ~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 292 (572)
.. ...-..-|..++..+-+.+.++.+.++-..+++..... .++ ...|..+.+.+...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~-~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 00 01123457778888888888888888887777644311 122 23578888888899999999998888877643
Q ss_pred CCCHHHHHHHHHHHHhCCCH------------HHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 008266 293 QTDIVAYNVLINGFCLNGDI------------SSAFAYFCQMLKRG--FLPDVITYNTLLNCLCKQGKLDEA-SHFYGVL 357 (572)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~------------~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~A-~~~~~~~ 357 (572)
-......|+..+|..|.. ++..+++..-.+.. +.....-|..|-.-+...|++..| .-+|+.+
T Consensus 970 --r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 345666677766665543 44444444322211 111123345555556677777665 4456665
Q ss_pred Hh
Q 008266 358 SK 359 (572)
Q Consensus 358 ~~ 359 (572)
.+
T Consensus 1048 ~R 1049 (1139)
T 4fhn_B 1048 SR 1049 (1139)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.75 E-value=11 Score=42.14 Aligned_cols=154 Identities=12% Similarity=0.072 Sum_probs=109.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC---------------
Q 008266 191 YNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDG--------------- 255 (572)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--------------- 255 (572)
...++..+...+..+-+.++.... +.++..--.+..++...|++++|.+.|.+....-..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 335677788888888887755433 335555556778899999999999999775321000
Q ss_pred ----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 008266 256 ----KATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI----VAYNVLINGFCLNGDISSAFAYFCQMLKRGF 327 (572)
Q Consensus 256 ----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 327 (572)
....-..-|..++..+-+.+.++.+.+.-....+...+.+. ..|..+.+++...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 00012346889999999999999999988877764322221 2578899999999999999999988877644
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHH
Q 008266 328 LPDVITYNTLLNCLCKQGKLDEAS 351 (572)
Q Consensus 328 ~p~~~~~~~ll~~~~~~g~~~~A~ 351 (572)
-...+..++..+|..|..+.-.
T Consensus 970 --r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHHHHH
T ss_pred --HHHHHHHHHHHHHhCCChhhhh
Confidence 3556777888888777765543
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.80 E-value=11 Score=29.35 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 008266 171 KADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 171 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (572)
+++.+++.+.+.++......+..+.-++.+.|++++|.+..+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444433322233333444444445555555555444443
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.72 E-value=5.8 Score=35.23 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=78.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhc
Q 008266 444 LAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI----ITYTELIKGHCAR 519 (572)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~ 519 (572)
....+.|+++++++....-++..+. |...-..|+..+|-.|+++.|.+-++...+. .|+. .+|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE--- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA--- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHH---
Confidence 4566889999999999988887544 7888889999999999999999999988874 4544 3444444432
Q ss_pred CCHHHHHHHHHHHHHcCCCC-----ChHHHHHHHHHHH--hcCCHHHHHHHHHHHHhc
Q 008266 520 GNMKEAEEVFAKIQTLGLAI-----DHIPFRILKKRYR--RMKESDKARDIHQKWLLR 570 (572)
Q Consensus 520 g~~~~A~~~~~~m~~~g~~p-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~l~~ 570 (572)
..=.+...-+-.| ...-...++.++. ..|+.++|.++-.++++.
T Consensus 79 -------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 -------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1112222222222 2233446666655 469999999998888654
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.62 E-value=8.7 Score=28.12 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008266 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (572)
+.-+..+-++.+...++.|++....+.+++|-+.+++.-|.++|+..+.. +.+....|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 45566666777777777777777777777777777777777777766654 222333455544
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.60 E-value=6.2 Score=32.09 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCC-CCCCh-------hhHHHHHHHHHHcCChhHHHHHHHHHhh
Q 008266 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKG-TVPDV-------LTHNYLVNELCKIGDLEKADHVIREMSE 181 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 181 (572)
++-.-+..+...|.++.|.-+.+.+.... ..|+. .++..+.+++...|++.+|...|++..+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45556777888899999888777755431 12231 2556778889999999999999988643
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.97 E-value=11 Score=29.23 Aligned_cols=58 Identities=3% Similarity=0.057 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Q 008266 490 ALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILK 548 (572)
Q Consensus 490 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 548 (572)
..+-++.+...++.|++.+..+.+++|.+-+++.-|.++++-.+.+ ..+...+|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 3444444444455566666666666666666666666666655543 222333444443
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.71 E-value=4 Score=33.22 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008266 262 ITSTILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
..---+..+|.+.+++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333445555666666666666555543
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.45 E-value=27 Score=31.97 Aligned_cols=24 Identities=8% Similarity=-0.025 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHH
Q 008266 120 RHVAVIRDLCLGGKIGTALWLRRK 143 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~ 143 (572)
.|-++..-|.+++++++|+.++..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 455566666666666666665443
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.78 E-value=15 Score=28.55 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008266 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (572)
|.-+..+-++.+...++.|++......+++|-+.+++.-|.++|+-.+.+ +.+....|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44556666677777777777777777778887778888888877776654 233344455554
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.37 E-value=33 Score=31.63 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH----HHHHHCCCCCCHhHHHHHH
Q 008266 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYF----CQMLKRGFLPDVITYNTLL 338 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~~~~~ll 338 (572)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++- +-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44445555666666666666544322 1223334443333322 3333345555555555555
Q ss_pred HHHHHcCCHH-HHHHHHHHHH----hCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008266 339 NCLCKQGKLD-EASHFYGVLS----KTG--VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGY 411 (572)
Q Consensus 339 ~~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 411 (572)
..+......+ .-..+.+.++ +.| ..-|+.....+...|.+.+++.+|...|- .+..+++..+..++--+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 5544433211 1111222221 112 23466777788888888888888877763 23333335554444333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008266 412 GRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEML 463 (572)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 463 (572)
...+...+ ++...-..++. |...++...|..++....
T Consensus 178 ~~~~~~~e--------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESHT--------------APLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGGG--------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCcc--------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 33332111 12222233333 455677777777665554
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.21 E-value=7.9 Score=37.65 Aligned_cols=61 Identities=8% Similarity=-0.117 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008266 438 TFNALILAETRGGSIFDAFSLKKEMLLDGIFP--DVFTYNLLIGASCNLGHIHLALQLYDEML 498 (572)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (572)
+...+...|.+.|++++|.+.+.++......+ -...+-..++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33445555555555555555555555431111 13344445555555555555555555543
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.94 E-value=40 Score=31.09 Aligned_cols=81 Identities=9% Similarity=0.054 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008266 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (572)
.++.....+...|.+.+++.+|..-|- .|-.+++..+..++.-+...+...+ ++...-..++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH
Confidence 566777778888888888888777662 2223333555554444433332111 1222222233
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 008266 339 NCLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~ 358 (572)
.|.-.++...|..+++...
T Consensus 196 -~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHH
Confidence 3455567777766655544
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.46 E-value=17 Score=26.50 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=28.2
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 008266 162 ELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNG 218 (572)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (572)
.+...|++++|..+.+.. +.||...|-+|... +.|--+++..-+.++..+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 345566666665555444 35666666555433 5555555555555555544
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.40 E-value=16 Score=26.55 Aligned_cols=51 Identities=12% Similarity=0.086 Sum_probs=27.9
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 008266 162 ELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNG 218 (572)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (572)
.+...|++++|..+.+.. +.||...|-+|... +.|--+++..-+.++..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALCEW--HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 345566666664444333 45666666555433 5566566665555555544
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.66 E-value=24 Score=27.81 Aligned_cols=70 Identities=9% Similarity=0.142 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008266 185 SPNCATYNAFITGYCRVNE---LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 185 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
.|+..+--.+..++.+..+ ..+++.+++++...+..-.....-.|.-++.+.|++++|.+..+.+++..|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 3444444445555555443 335555666655533211222333344556666666666666666666554
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.04 E-value=23 Score=34.28 Aligned_cols=98 Identities=13% Similarity=0.014 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC---CCCCCHhHH--
Q 008266 154 LTHNYLVNELCKIGDLEKADHVIREMSEM--RPSPNCATYNAFITGYCRVNELDKALHLFSTMANN---GIRPNRVTH-- 226 (572)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~-- 226 (572)
.+...+...|.+.|+++.|.+.+.++.+. +...-...+-..++.+...+++..+...+.+.... +..|+....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35667778888888888888888887662 33344566777778888888888888777776432 222222110
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHh
Q 008266 227 NILVHALCKKGLLGDAVKFLGEVLA 251 (572)
Q Consensus 227 ~~ll~~~~~~g~~~~a~~~~~~~~~ 251 (572)
..-...+...+++..|.+.|-++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 0111122345667666666666554
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.65 E-value=23 Score=29.84 Aligned_cols=57 Identities=7% Similarity=-0.075 Sum_probs=40.1
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008266 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQT 294 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 294 (572)
.+...++..+|..|...+.+. .-...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~--~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGT--KLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSST--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344567777777777766645 667777777777777777777777777777665444
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.01 E-value=47 Score=30.34 Aligned_cols=168 Identities=8% Similarity=0.050 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHH----HHHHHHHCCCCCCHhHHHHHHH
Q 008266 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALH----LFSTMANNGIRPNRVTHNILVH 231 (572)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~~~~~ll~ 231 (572)
|.++..-|.+.+++++|++++..- ...+.+.|+...|-+ +.+...+.+++++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 455666688889999997776543 223445566555444 3555566778888888777877
Q ss_pred HHHhCCChh-HHHHHHHHHH----hCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008266 232 ALCKKGLLG-DAVKFLGEVL----ADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGF 306 (572)
Q Consensus 232 ~~~~~g~~~-~a~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (572)
.+.....-+ .-.+++++++ +.+. ....++.....+...|.+.|++.+|...|- .|-.-+...+..++.-+
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHH
Confidence 766543222 2234444443 2322 122677888888888888888888877653 11111344454444443
Q ss_pred HhC---CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008266 307 CLN---GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 307 ~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 358 (572)
... |...++ +...-..++ .|.-.|+...|..+++...
T Consensus 176 ~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 333 333221 111112222 3445677777777776554
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.96 E-value=24 Score=29.74 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008266 452 IFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITP 504 (572)
Q Consensus 452 ~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 504 (572)
..++.++|..|...|+--. +..|......+-..|++++|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555554443322 3344444444555555555555555555544333
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.31 E-value=65 Score=28.60 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=41.9
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008266 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+.+.|+++++++....-++..+ .|...-..|+..+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P----~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP----KDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567788888888887777665 77777778888888888888888877777665
No 269
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=67.63 E-value=1.2e+02 Score=31.25 Aligned_cols=16 Identities=6% Similarity=-0.182 Sum_probs=10.8
Q ss_pred HhcCCHHHHHHHHHHH
Q 008266 552 RRMKESDKARDIHQKW 567 (572)
Q Consensus 552 ~~~g~~~~A~~~~~~~ 567 (572)
.+.|+++.|.+.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 5667777777766653
No 270
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.15 E-value=33 Score=33.79 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC---CH--HHH-HHHHHHHHhcCCHhHHHHHHHHHHH
Q 008266 154 LTHNYLVNELCKIGDLEKADHVIREMSEMRPSP---NC--ATY-NAFITGYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~--~~~-~~li~~~~~~g~~~~A~~~~~~m~~ 216 (572)
..+|.+++.|...+.++.|..+..+..- |.. |. ..| ..+...+.-.+++.+|.+.+.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455566666666666666666665531 111 11 112 2334455556666666666666544
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=65.46 E-value=95 Score=29.49 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=50.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCC--CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHH-
Q 008266 228 ILVHALCKKGLLGDAVKFLGEVLADDDG--KATSDVITSTILMDSYFKNGDKFQALALWNDMFQK--NIQTDIVAYNVL- 302 (572)
Q Consensus 228 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l- 302 (572)
.++..|...|++.+|.+++.++.+.-.. ....-..++..-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4666777777777776666666542110 00023445555666677777777777776665432 112233222211
Q ss_pred ---HHHHH-hCCCHHHHHHHHHHH
Q 008266 303 ---INGFC-LNGDISSAFAYFCQM 322 (572)
Q Consensus 303 ---i~~~~-~~g~~~~a~~~~~~m 322 (572)
.-.+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 12234 566777776666554
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.36 E-value=51 Score=26.33 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008266 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQT 294 (572)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 294 (572)
+++.++|..|...+.+. .-...|......+...|++.+|.++|+.-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~--~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGT--LSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTT--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34677777777766645 666777777777777777777777777777665444
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.27 E-value=53 Score=26.23 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008266 489 LALQLYDEMLRRGITPD-IITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI 539 (572)
Q Consensus 489 ~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 539 (572)
++..+|..|..+|+--. ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 36777777777765544 3556677777777788888888887777776666
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.17 E-value=43 Score=24.41 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=2.6
Q ss_pred CCChhHH
Q 008266 236 KGLLGDA 242 (572)
Q Consensus 236 ~g~~~~a 242 (572)
.|++++|
T Consensus 52 rG~Yq~A 58 (115)
T 2uwj_G 52 QGRYQEA 58 (115)
T ss_dssp TTCHHHH
T ss_pred chhHHHH
Confidence 3333333
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.39 E-value=45 Score=24.36 Aligned_cols=8 Identities=25% Similarity=0.439 Sum_probs=3.0
Q ss_pred CCChhHHH
Q 008266 236 KGLLGDAV 243 (572)
Q Consensus 236 ~g~~~~a~ 243 (572)
.|++++|.
T Consensus 53 rG~Yq~Al 60 (116)
T 2p58_C 53 RGDYASAL 60 (116)
T ss_dssp TTCHHHHH
T ss_pred chhHHHHH
Confidence 33333333
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.88 E-value=71 Score=25.87 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=34.8
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 008266 490 ALQLYDEMLRRGITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDH 541 (572)
Q Consensus 490 A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 541 (572)
+..+|..|..+|+--.. ..|......+...|++.+|.++|+.-.+.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 55677777776654433 45666666777777777777777777777666643
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.55 E-value=75 Score=25.73 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008266 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD 295 (572)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 295 (572)
+.+.++|..|...+.+. .-...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 77 ~~p~~if~~L~~~~IG~--~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGV--SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSST--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 34666777777766544 6666777777777777777777777777766654443
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.96 E-value=1.3e+02 Score=28.15 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=21.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHh
Q 008266 121 HVAVIRDLCLGGKIGTALWLRRKMIQ 146 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~ 146 (572)
...+|.-|...|+.++|...++++..
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 46778889999999999999888653
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=56.34 E-value=1.8e+02 Score=29.65 Aligned_cols=141 Identities=10% Similarity=0.037 Sum_probs=71.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH-HHHHHHHHHHH
Q 008266 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNC-ATYNAFITGYC 199 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~ 199 (572)
|..... ..+.|++..+.++...+....+. .-..|..+...+ ......+....+++- .-.|-. ..-+..+..+.
T Consensus 10 ~~~a~~-a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~---~~~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 10 YAQIKQ-AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRAN---PTLPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHH-HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHC---TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHC---CCChhHHHHHHHHHHHHH
Confidence 444444 34567777777766555332111 111233222222 111334433333332 112222 22344556666
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008266 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
+.+++...+..+.. .+.+...-.....+....|+.++|......+-..+. .....+..++..+.+.|.
T Consensus 84 ~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~----~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK----SQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS----CCCTHHHHHHHHHHHTTC
T ss_pred hCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC----CCcHHHHHHHHHHHHCCC
Confidence 77777766664432 233444455566777778887777777777766664 444455666666665553
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.32 E-value=66 Score=27.97 Aligned_cols=90 Identities=11% Similarity=0.040 Sum_probs=45.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008266 442 LILAETRGGSIFDAFSLKKEMLLD--GIFP----DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKG 515 (572)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 515 (572)
-++.+....++++|..++++..+. +..+ +.......+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 356667777777777777765532 1221 1111122233333333333344444444 22 3445555556666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 008266 516 HCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 516 ~~~~g~~~~A~~~~~~m~~ 534 (572)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 6677777777777666554
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.93 E-value=28 Score=29.99 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=23.7
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCChhh--HHHHHHHHHHcCChhHH
Q 008266 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLT--HNYLVNELCKIGDLEKA 172 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A 172 (572)
+...++.|+.+....+++.+.+.|..++... -...+...+..|+.+-.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 62 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH
Confidence 3344566777766666666655554433221 11233334445555433
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.05 E-value=48 Score=28.41 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008266 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQT 294 (572)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 294 (572)
+++..+|..|...+.+. .-...|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~--~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQ--ESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCST--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcch--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45566666666666544 566666666666666777777777776666554343
No 283
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.03 E-value=58 Score=29.09 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=9.3
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 008266 268 MDSYFKNGDKFQALALWND 286 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~ 286 (572)
+...+..|+.+-+.-+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3444555665554444443
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.66 E-value=44 Score=29.44 Aligned_cols=11 Identities=0% Similarity=0.045 Sum_probs=5.1
Q ss_pred HHHHHhCCChh
Q 008266 125 IRDLCLGGKIG 135 (572)
Q Consensus 125 i~~~~~~g~~~ 135 (572)
+...++.|+.+
T Consensus 9 L~~A~~~g~~~ 19 (285)
T 1wdy_A 9 LIKAVQNEDVD 19 (285)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHcCCHH
Confidence 33344555544
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.94 E-value=1.5e+02 Score=25.61 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=18.0
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008266 364 PDQISYKTIIQGLCIHGDIVKAREFLLSML 393 (572)
Q Consensus 364 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 393 (572)
++.......+..+.+.|+-++|.++|-+..
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 344555555666666677666666665543
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=44.40 E-value=1.4e+02 Score=24.87 Aligned_cols=153 Identities=16% Similarity=0.058 Sum_probs=69.9
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008266 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
+|...-...+..+.+.|.. .+...+..+... ++...-...+.++.+.+..+. ...+..+.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 3444444455555555552 333333333332 355555555566666665333 333333332 24555555556
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008266 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
.++.+.+..+ +...+..+.. .++..+-...+.++.+.|..+ +...+..++.. ++..+-...+.++.+.+
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d------~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD------EDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC------SSHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcC------CCHHHHHHHHHHHHHhC
Confidence 6666666533 3333333332 345555555555555555532 33344444321 33444444445555554
Q ss_pred CHHHHHHHHHHHH
Q 008266 276 DKFQALALWNDMF 288 (572)
Q Consensus 276 ~~~~A~~~~~~~~ 288 (572)
. .++...+..+.
T Consensus 172 ~-~~~~~~L~~~l 183 (211)
T 3ltm_A 172 G-ERVRAAMEKLA 183 (211)
T ss_dssp S-HHHHHHHHHHH
T ss_pred c-hhHHHHHHHHH
Confidence 4 23333333333
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.59 E-value=65 Score=29.38 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=20.2
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHH
Q 008266 121 HVAVIRDLCLGGKIGTALWLRRKMI 145 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~ 145 (572)
...+|.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3567888888999999998888764
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.24 E-value=27 Score=29.97 Aligned_cols=13 Identities=0% Similarity=-0.082 Sum_probs=6.2
Q ss_pred HHHHHHcCChhHH
Q 008266 160 VNELCKIGDLEKA 172 (572)
Q Consensus 160 i~~~~~~g~~~~A 172 (572)
+...++.|+.+-+
T Consensus 46 L~~A~~~~~~~~v 58 (240)
T 3eu9_A 46 LHWAAINNRIDLV 58 (240)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHhCCHHHH
Confidence 3444455555444
No 289
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=42.01 E-value=1.9e+02 Score=26.15 Aligned_cols=17 Identities=6% Similarity=0.036 Sum_probs=8.0
Q ss_pred HHHHHHhCCChhhHHHH
Q 008266 124 VIRDLCLGGKIGTALWL 140 (572)
Q Consensus 124 li~~~~~~g~~~~A~~~ 140 (572)
.+..-++.|+++....+
T Consensus 28 ~L~~Av~~g~~~~V~~L 44 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQL 44 (337)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 33334555665544433
No 290
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=41.21 E-value=76 Score=30.40 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=20.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHHcCCHHHHHHHH
Q 008266 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITY--NTLLNCLCKQGKLDEASHFY 354 (572)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~A~~~~ 354 (572)
...+..|+.+ +++.+.+.|..++...+ .+.+...+..|+.+-+..++
T Consensus 184 ~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 232 (437)
T 1n11_A 184 HVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232 (437)
T ss_dssp HHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3344555544 33344444444332111 12234445666655444443
No 291
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=41.06 E-value=1.6e+02 Score=26.70 Aligned_cols=12 Identities=17% Similarity=0.163 Sum_probs=5.0
Q ss_pred HHHHHHcCCCCC
Q 008266 529 FAKIQTLGLAID 540 (572)
Q Consensus 529 ~~~m~~~g~~p~ 540 (572)
++-+.+.|-.||
T Consensus 317 v~~Ll~~GA~~d 328 (337)
T 4g8k_A 317 VKVLLSHGAKED 328 (337)
T ss_dssp HHHHHHTTCCC-
T ss_pred HHHHHHCcCCCC
Confidence 344445554444
No 292
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.93 E-value=1.3e+02 Score=24.16 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=25.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 008266 484 LGHIHLALQLYDEMLRRGITP--DIITYTELIK-G-----HCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 484 ~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~m~~ 534 (572)
.|++-+|.+++++.-...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 366666666666655432223 3344444444 1 1234555555555555543
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.26 E-value=51 Score=28.24 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008266 489 LALQLYDEMLRRGITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI 539 (572)
Q Consensus 489 ~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 539 (572)
.+..+|..|..+||--.. ..|......+...|++.+|.++|+.-.+.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344455555544433222 334444444555555555555555555444444
No 294
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=38.27 E-value=2.8e+02 Score=26.74 Aligned_cols=137 Identities=19% Similarity=0.161 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C---CCHHHHHHHHHHHHh
Q 008266 381 DIVKAREFLLSMLEK--------SVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV-S---SNVFTFNALILAETR 448 (572)
Q Consensus 381 ~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~---p~~~~~~~ll~~~~~ 448 (572)
..++...++...... +...+......++.. ..|+..++..+++.+..... . ....+..
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e-------- 235 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPE-------- 235 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHH--------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHH--------
Confidence 456666777776653 233455566666555 46888888888777654221 0 0011111
Q ss_pred cCCHHHHHHHHHHHHhCCC---CC-CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008266 449 GGSIFDAFSLKKEMLLDGI---FP-DVFTYNLLIGAS---CNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGN 521 (572)
Q Consensus 449 ~g~~~~a~~~~~~m~~~~~---~p-~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 521 (572)
.+++...... .. ....| .++.++ .+.++.+.|+..+.+|.+.|..|....-..+..+.-.-|.
T Consensus 236 ---------~v~~~l~~~~~~~dk~gd~~y-d~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 236 ---------LLTEIAGERSARFDNKGDRFY-DLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp ---------HHHHHHTCCCCC---CCHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred ---------HHHHHHhhhhhccCCccchHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 1112221110 11 12223 333443 3567899999999999998877766666666666666554
Q ss_pred -----HHHHHHHHHHHHHcCC
Q 008266 522 -----MKEAEEVFAKIQTLGL 537 (572)
Q Consensus 522 -----~~~A~~~~~~m~~~g~ 537 (572)
...|...++.....|.
T Consensus 306 a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 306 ADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp GCTHHHHHHHHHHHHHHHSCH
T ss_pred CChhHHHHHHHHHHHHHHhCC
Confidence 2345555566666664
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=38.19 E-value=1.4e+02 Score=25.32 Aligned_cols=23 Identities=9% Similarity=0.120 Sum_probs=12.3
Q ss_pred HHHHHcCChhHHHHHHHHHhhCC
Q 008266 161 NELCKIGDLEKADHVIREMSEMR 183 (572)
Q Consensus 161 ~~~~~~g~~~~A~~~~~~~~~~~ 183 (572)
...++.|+.+....+++.+.+.+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 33455566666655555444433
No 296
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=37.76 E-value=1.8e+02 Score=24.36 Aligned_cols=92 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008266 442 LILAETRG---GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH-----IHLALQLYDEMLRRGITPDIITYTELI 513 (572)
Q Consensus 442 ll~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~p~~~~~~~l~ 513 (572)
+|+++-|. .+++.|+-.+.+|++.| .|....-..++-+.-..|. ...|...++.....|.+--.......+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 008266 514 KGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~ 534 (572)
--++..-+-..+...++.+.+
T Consensus 96 iyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 297
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=37.32 E-value=88 Score=27.38 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=4.1
Q ss_pred HHHcCChhHH
Q 008266 163 LCKIGDLEKA 172 (572)
Q Consensus 163 ~~~~g~~~~A 172 (572)
.++.|+.+..
T Consensus 12 A~~~g~~~~v 21 (285)
T 1wdy_A 12 AVQNEDVDLV 21 (285)
T ss_dssp HHHTTCHHHH
T ss_pred HHHcCCHHHH
Confidence 3344444333
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=37.30 E-value=50 Score=27.28 Aligned_cols=13 Identities=8% Similarity=0.051 Sum_probs=5.5
Q ss_pred HHHHHHHHCCCCC
Q 008266 317 AYFCQMLKRGFLP 329 (572)
Q Consensus 317 ~~~~~m~~~g~~p 329 (572)
++.+.+.+.|..+
T Consensus 159 ~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 159 DIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHTTCCT
T ss_pred HHHHHHHHCCCCC
Confidence 3344444444433
No 299
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.61 E-value=1.5e+02 Score=23.17 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=28.2
Q ss_pred HHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008266 144 MIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (572)
Q Consensus 144 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (572)
+.+.|..++..- ..++..+...+..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 444554444332 2334444444445556666666655555555554444444444444
No 300
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.43 E-value=75 Score=26.95 Aligned_cols=6 Identities=17% Similarity=0.125 Sum_probs=2.5
Q ss_pred HhCCCH
Q 008266 307 CLNGDI 312 (572)
Q Consensus 307 ~~~g~~ 312 (572)
+..|+.
T Consensus 117 ~~~~~~ 122 (240)
T 3eu9_A 117 AQFGHT 122 (240)
T ss_dssp HHTTCH
T ss_pred HHcCHH
Confidence 334443
No 301
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.43 E-value=94 Score=27.66 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=7.0
Q ss_pred HHHHcCCHHHHHHHHH
Q 008266 340 CLCKQGKLDEASHFYG 355 (572)
Q Consensus 340 ~~~~~g~~~~A~~~~~ 355 (572)
..+..|..+-+..+++
T Consensus 167 ~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 167 ITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHH
Confidence 3344455444444443
No 302
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.22 E-value=62 Score=28.16 Aligned_cols=54 Identities=17% Similarity=0.039 Sum_probs=27.0
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhH-------HHHHHHHHH--hCCChhHHHHHHHHH
Q 008266 196 TGYCRVNELDKALHLFSTMANNGIRPNRVT-------HNILVHALC--KKGLLGDAVKFLGEV 249 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~g~~~~a~~~~~~~ 249 (572)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+.-+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344466666666666666655554444222 222322221 456665555555543
No 303
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.08 E-value=1.1e+02 Score=20.88 Aligned_cols=59 Identities=8% Similarity=0.183 Sum_probs=30.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 008266 497 MLRRGITPDIITYTELIKGHCARG-NMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKE 556 (572)
Q Consensus 497 m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 556 (572)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445555555433 23344444433 344556666666665444555555555566665553
No 304
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=33.32 E-value=1.3e+02 Score=23.64 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=27.5
Q ss_pred HHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008266 144 MIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (572)
Q Consensus 144 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (572)
+.+.|..++..- ..++..+...+ .-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344455444332 22333444444 4556666666665555555554444444444444
No 305
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.98 E-value=2.2e+02 Score=23.83 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHhCCCC
Q 008266 415 GDLSNAFSIRDLMLSFGVS 433 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~ 433 (572)
.+.+.|+.++-+|.+.|-.
T Consensus 21 SDpDAAly~LaRMl~~GED 39 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGD 39 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4444444444444444433
No 306
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.46 E-value=2e+02 Score=23.19 Aligned_cols=52 Identities=10% Similarity=0.095 Sum_probs=34.0
Q ss_pred HcCChhHHHHHHHHHhhCCCCC--CHHHHHHHHH------HHHhcCCHhHHHHHHHHHHH
Q 008266 165 KIGDLEKADHVIREMSEMRPSP--NCATYNAFIT------GYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 165 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~------~~~~~g~~~~A~~~~~~m~~ 216 (572)
..|++-+|.++|+..-.....+ ....|..||. ...+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477888888888776655445 4455666666 23356778888777777654
No 307
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=31.73 E-value=2.7e+02 Score=24.50 Aligned_cols=48 Identities=13% Similarity=0.048 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHH---cCCCCChHHHHHHHH-----HHHhcCCHHHHHHHHHHHHh
Q 008266 522 MKEAEEVFAKIQT---LGLAIDHIPFRILKK-----RYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 522 ~~~A~~~~~~m~~---~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~l~ 569 (572)
.+.|.+.|+.+.+ ..++|...+.-.|+- .|--.++.++|.++-++.++
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556667766543 246776555433332 24457999999888777654
No 308
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.28 E-value=1.5e+02 Score=22.84 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=19.5
Q ss_pred HHHHHHcC-ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008266 160 VNELCKIG-DLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (572)
Q Consensus 160 i~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (572)
+..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 24 l~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 24 LQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33333333 44455555555555554444444444444444433
No 309
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=31.28 E-value=29 Score=30.42 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=31.7
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCChhh-------HHHHHHHHH--HcCChhHHHHHHHHH
Q 008266 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLT-------HNYLVNELC--KIGDLEKADHVIREM 179 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-------~~~li~~~~--~~g~~~~A~~~~~~~ 179 (572)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3345666888887777777776665554322 233333332 557777666666553
No 310
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.91 E-value=3.7e+02 Score=25.90 Aligned_cols=141 Identities=17% Similarity=0.137 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHhC--------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHh
Q 008266 346 KLDEASHFYGVLSKT--------GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV----VPEPHIWNVIIDGYGR 413 (572)
Q Consensus 346 ~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~ 413 (572)
..++...++...... ++..+......++.. -.|+..++..+++.+..... .....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 356666777766553 233455566666655 46888888888888765321 1012222222222211
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----
Q 008266 414 CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAE---TRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH---- 486 (572)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---- 486 (572)
... ....+......++.++ .+.++.+.|+.++.+|.+.|..|....-..++.+.-.-|.
T Consensus 244 ~~~--------------~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~ 309 (447)
T 3pvs_A 244 RSA--------------RFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309 (447)
T ss_dssp CCC--------------C---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTH
T ss_pred hhh--------------ccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChh
Confidence 100 0001111222233333 3457899999999999999888776666666666555554
Q ss_pred -HHHHHHHHHHHHHCCC
Q 008266 487 -IHLALQLYDEMLRRGI 502 (572)
Q Consensus 487 -~~~A~~~~~~m~~~g~ 502 (572)
...|...++....-|.
T Consensus 310 a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 310 AMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 3345566666666663
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.22 E-value=1.7e+02 Score=23.11 Aligned_cols=44 Identities=9% Similarity=0.153 Sum_probs=21.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008266 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (572)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (572)
++..+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444445555555555555544444444444444444444
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.87 E-value=2.9e+02 Score=29.89 Aligned_cols=48 Identities=15% Similarity=-0.112 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChH----HHHHHHHHHHhcC
Q 008266 508 TYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI----PFRILKKRYRRMK 555 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~g 555 (572)
-|..++..+-+.+-++.+.++.+.+.+.--..|.. .|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 57788888888899999998888888752222222 3556666665544
No 313
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=29.56 E-value=3.5e+02 Score=25.17 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 008266 404 WNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGS--IFDAFSLKKEMLLDGIF 468 (572)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~ 468 (572)
...++.-|...|+.++|...++++...... ...+...+..++-+.++ .+...+++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 345556666666666666666665431111 12233333344433322 23445555555554443
No 314
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.53 E-value=3.2e+02 Score=24.75 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHH
Q 008266 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDI--SSAFAYFCQML 323 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~ 323 (572)
....++.-|...|+.++|...++++.... -.......++......++. +.+-.++..+.
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~~p~--~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGG--GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcc--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34677888888999999999888864221 1122223344444444432 23444555554
No 315
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.13 E-value=2.6e+02 Score=23.60 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008266 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGAS 481 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 481 (572)
.+++.|+-.+.+|++.|-.|....-..++-+.
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44455555555555544444444333333333
No 316
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=28.12 E-value=1.7e+02 Score=21.14 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=19.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008266 490 ALQLYDEMLRRGITPDIITYTELIKGHCARG 520 (572)
Q Consensus 490 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 520 (572)
|.++.+++...|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4555566666667676666666666666555
No 317
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.16 E-value=1.7e+02 Score=23.07 Aligned_cols=35 Identities=9% Similarity=0.142 Sum_probs=16.9
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008266 168 DLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (572)
Q Consensus 168 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (572)
..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555544444444444444444444
No 318
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.96 E-value=2.3e+02 Score=22.14 Aligned_cols=58 Identities=16% Similarity=0.021 Sum_probs=27.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008266 392 MLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG 450 (572)
Q Consensus 392 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 450 (572)
+.+.|.++++. -..++..+...+..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34445544333 22333444444445556666666655544444444444444444444
No 319
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=26.57 E-value=3.1e+02 Score=23.66 Aligned_cols=48 Identities=8% Similarity=0.040 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHH---cCCCCChHHHHHHHH-----HHHhcCCHHHHHHHHHHHHh
Q 008266 522 MKEAEEVFAKIQT---LGLAIDHIPFRILKK-----RYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 522 ~~~A~~~~~~m~~---~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~l~ 569 (572)
.+.|.+.|+.+.+ ..++|...+.-.|.- .|--.++.++|.++-++.++
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556667766543 246776655433332 24467999999888777653
No 320
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.96 E-value=2.7e+02 Score=22.70 Aligned_cols=175 Identities=13% Similarity=0.058 Sum_probs=0.0
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008266 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.+|...-...+..+.+.|..+..-.+.+.+... +...-...+.++.+.|..+....+.+.+.+ ++...-...
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~----~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d----~~~~vr~~a 96 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDE----DAWVRRAAADALGQIGDERAVEPLIKALKD----EDGWVRQSA 96 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCC----CHHHHHHHHHHHHhhCCHHHHHHHHHHHcC----CCHHHHHHH
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008266 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
+.++.+.+..+....+.+.+. .++..+-...+.++.+.++.+....+...+.. ++..+-...+.++.+.
T Consensus 97 ~~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d-------~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 97 AVALGQIGDERAVEPLIKALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALKD-------EDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTC-------SSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHh
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 008266 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDI 312 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 312 (572)
|..+....+...+. .++...-...+.++.+.+..
T Consensus 166 ~~~~~~~~L~~~l~----d~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 166 GGERVRAAMEKLAE----TGTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp CSHHHHHHHHHHHH----HCCHHHHHHHHHHHHHCC--
T ss_pred CchhHHHHHHHHHh----CCCHHHHHHHHHHHHHHHhh
No 321
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=25.88 E-value=4.3e+02 Score=24.98 Aligned_cols=216 Identities=14% Similarity=0.041 Sum_probs=108.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHhhHHH--
Q 008266 301 VLINGFCLNGDISSAFAYFCQMLKRGFLPD-----VITYNTLLNCLCKQGKLDEASHFYGVLSKT--GVAPDQISYKT-- 371 (572)
Q Consensus 301 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~-- 371 (572)
.++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+...... .+.+++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467777788888888877777765311111 223444566677888888888777766442 12233322211
Q ss_pred --HHHHHH-HcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-H-HHhCCCCCCHHHHH
Q 008266 372 --IIQGLC-IHGDIVKAREFLLSMLEKSVVPE------PHIWNVIIDGYGRCGDLSNAFSIRD-L-MLSFGVSSNVFTFN 440 (572)
Q Consensus 372 --li~~~~-~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~-~-~~~~~~~p~~~~~~ 440 (572)
-.-.+. ..+++..|...|-+..+.-.... ...|..+.... .++..+...++. . .... ..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhcccccccc-CCccHHHHH
Confidence 112334 56788888777766542110111 11232222222 223222222221 1 1112 345666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHH
Q 008266 441 ALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRG-----ITPDIITYTELIKG 515 (572)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~l~~~ 515 (572)
.++.+| ..+++.+...+++.... .+..|......+ ..+++.+.+++ .+-...++..+...
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~-------------~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~ 325 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHL-------------GTLYDTMLEQNLCRIIEPYSRVQVAHVAES 325 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHH-------------HHHHHHHHHHHHHHHHTTCSEEEHHHHHHH
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHH-------------HHHHHHHHHHHHHHHhHhhceeeHHHHHHH
Confidence 677665 45677666666665433 244454422111 11222222110 12344566666665
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 008266 516 HCARGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 516 ~~~~g~~~~A~~~~~~m~~~g 536 (572)
+.- ..++++..+-+|...|
T Consensus 326 l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 326 IQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HTC--CHHHHHHHHHHHHHTT
T ss_pred HCc--CHHHHHHHHHHHHHCC
Confidence 543 6788889998888764
No 322
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=25.88 E-value=3.2e+02 Score=23.56 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHc---CCCCChHHHHHHHH-----HHHhcCCHHHHHHHHHHHHh
Q 008266 522 MKEAEEVFAKIQTL---GLAIDHIPFRILKK-----RYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 522 ~~~A~~~~~~m~~~---g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~l~ 569 (572)
.+.|.+.|+.+.+. .++|...+.-.|.- .|--.|+.++|.++-++.++
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566666665532 36776655433332 24458999999888777654
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.82 E-value=6.5e+02 Score=27.12 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCC-CCCccHHHHHHHHHHHHhcC
Q 008266 225 THNILVHALCKKGLLGDAVKFLGEVLADDDG-KATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 275 (572)
-|..++..+-+.+.++.+.++-+.+++.-.. ........|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5778889999999999999988888864321 10022357888888877655
No 324
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.68 E-value=3.1e+02 Score=23.29 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcCC--------------HHHHHHHHH
Q 008266 472 FTYNLLIGASC--NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC-----ARGN--------------MKEAEEVFA 530 (572)
Q Consensus 472 ~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-----~~g~--------------~~~A~~~~~ 530 (572)
+.+..+..++. +.+++.+-..+++.+...++.-.... ...+..+. ..|+ .+.|+.+|+
T Consensus 18 fyf~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~~~~~-~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~ 96 (235)
T 3bu8_A 18 FYFHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHTV-SRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLE 96 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCCCHHH-HHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhCcccccccc-hhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHH
Q ss_pred HHHHcCCCCChH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008266 531 KIQTLGLAIDHI-------PFRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 531 ~m~~~g~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
.+.+.-.-++.. .-...+-.|.+.|.+++|.+++++....+.
T Consensus 97 ~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~ 145 (235)
T 3bu8_A 97 MIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP 145 (235)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG
T ss_pred HHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC
No 325
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.65 E-value=1.9e+02 Score=26.73 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHH
Q 008266 121 HVAVIRDLCLGGKIGTALWLRRKMI 145 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~ 145 (572)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3557777777788888877777664
No 326
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.31 E-value=2.3e+02 Score=23.08 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=4.9
Q ss_pred HHHHHHHHhCCC
Q 008266 281 LALWNDMFQKNI 292 (572)
Q Consensus 281 ~~~~~~~~~~~~ 292 (572)
.++.+.+.+.|.
T Consensus 94 ~~iv~~Ll~~Ga 105 (186)
T 3t8k_A 94 TELCKIFLEKGA 105 (186)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 334444444443
No 327
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.26 E-value=2.6e+02 Score=22.20 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=9.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 008266 407 IIDGYGRCGDLSNAFSIRDLM 427 (572)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~~ 427 (572)
++.-|...|+.++|...++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 444444444444444444444
No 328
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.19 E-value=1.3e+02 Score=24.21 Aligned_cols=57 Identities=12% Similarity=0.024 Sum_probs=28.5
Q ss_pred hCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCC
Q 008266 146 QKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM--RPSPNCATYNAFITGYCRVNE 203 (572)
Q Consensus 146 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 203 (572)
+.|..++.. -..++..+...+..-.|.++++.+.+. ++..+..|-..-+..+...|-
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 345544332 233445555555555666666666555 444454444444445544443
No 329
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=24.89 E-value=3.5e+02 Score=23.59 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHH---cCCCCChHHHHHHHH-----HHHhcCCHHHHHHHHHHHHh
Q 008266 522 MKEAEEVFAKIQT---LGLAIDHIPFRILKK-----RYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 522 ~~~A~~~~~~m~~---~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~l~ 569 (572)
.+.|.+.|+.+.. ..++|...+.-.|+- .|--.++.++|.++-++.++
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556667766543 246776655433332 24457999999888777653
No 330
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.76 E-value=1e+02 Score=25.31 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=4.1
Q ss_pred HHcCCHHHHH
Q 008266 342 CKQGKLDEAS 351 (572)
Q Consensus 342 ~~~g~~~~A~ 351 (572)
+..|+.+-+.
T Consensus 80 ~~~~~~~~~~ 89 (201)
T 3hra_A 80 GAQGRTEILA 89 (201)
T ss_dssp HHTTCHHHHH
T ss_pred HHcCCHHHHH
Confidence 3444444333
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.21 E-value=2.4e+02 Score=21.69 Aligned_cols=58 Identities=9% Similarity=0.035 Sum_probs=27.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008266 392 MLEKSVVPEPHIWNVIIDGYGRCG-DLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG 450 (572)
Q Consensus 392 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 450 (572)
+.+.|.++++. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33445554433 223334444444 45556666666655554445544444444444443
No 332
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.11 E-value=1.7e+02 Score=19.85 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008266 171 KADHVIREMSEMRPSPNCATYNAFITGY 198 (572)
Q Consensus 171 ~A~~~~~~~~~~~~~~~~~~~~~li~~~ 198 (572)
.+.++.+.+.+.++..+..|-...+..+
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L 62 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 3344444443333333333333333333
No 333
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.10 E-value=2.6e+02 Score=21.93 Aligned_cols=58 Identities=5% Similarity=0.032 Sum_probs=26.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008266 392 MLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG 450 (572)
Q Consensus 392 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 450 (572)
+.+.|.++++. -..++..+...+..-.|.++++.+.+.++..+..|.-.-+..+...|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34455443322 23344444444455556666666655544444444444444444444
No 334
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.94 E-value=5.3e+02 Score=25.42 Aligned_cols=70 Identities=10% Similarity=0.066 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCCH--hHHH-HHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008266 185 SPNCATYNAFITGYCRVNELDKALHLFSTMANNGI-RPNR--VTHN-ILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 185 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
......+|.+++.|...+.+++|..+..+..--.. .++. .+|. .+.+.+.-.+++.+|.+.+..+...-+
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 34567889999999999999999999998842100 1121 2333 355777889999999999999887543
No 335
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.86 E-value=2.7e+02 Score=22.03 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCC
Q 008266 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD--ISSAFAYFCQMLKRGFL 328 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~ 328 (572)
....++.-|...|+.++|.+.++++.... -....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34556677777777777777777775210 1112233333444443222 34455666666655443
No 336
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=23.44 E-value=4e+02 Score=29.95 Aligned_cols=78 Identities=13% Similarity=0.067 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008266 487 IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQK 566 (572)
Q Consensus 487 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (572)
.++-.+.|.++.+---.-|.......++.-.+.|++..|.+++.++.+. +|....|..++..+...| |+....+.++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 3444555666654311123333333334444678888888888888876 467777888877777666 5555566665
Q ss_pred H
Q 008266 567 W 567 (572)
Q Consensus 567 ~ 567 (572)
+
T Consensus 1342 ~ 1342 (1354)
T 3lxu_X 1342 M 1342 (1354)
T ss_dssp H
T ss_pred h
Confidence 5
No 337
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.99 E-value=2.5e+02 Score=22.05 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=28.7
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008266 392 MLEKSVVPEPHIWNVIIDGYGRCG-DLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGS 451 (572)
Q Consensus 392 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 451 (572)
+.+.|.++++. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 44455554433 223334444444 455566666666655555555554444444444443
No 338
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=22.84 E-value=2.6e+02 Score=27.86 Aligned_cols=29 Identities=7% Similarity=0.064 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008266 187 NCATYNAFITGYCRVNELDKALHLFSTMA 215 (572)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (572)
+..--..++..|.+.|-.+.|.++++.+-
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g 543 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLG 543 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 33344444444555555555555544443
No 339
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.81 E-value=4.8e+02 Score=24.51 Aligned_cols=228 Identities=11% Similarity=0.091 Sum_probs=99.9
Q ss_pred HHHhHHHHHHHHhcCCCCCCCCcCHH--hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChh--hHHHHHHHHHHcCCh
Q 008266 94 LKENLDRLKTMRDTGPVRCTLETDYR--RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVL--THNYLVNELCKIGDL 169 (572)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~ 169 (572)
..+..+.++.+.+. |..++.. ...+.+...+..|+.+-+..+++ .|..++.. .-...+...++.|+.
T Consensus 23 ~~g~~~~v~~Ll~~-----g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~ 93 (437)
T 1n11_A 23 FMGHLPIVKNLLQR-----GASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARIGHT 93 (437)
T ss_dssp HHTCHHHHHHHHHT-----TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred HCCCHHHHHHHHHc-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 34555666665554 3333221 11233444566677765555544 34333221 112234445566777
Q ss_pred hHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhCCChhHHH
Q 008266 170 EKADHVIREMSEMRPSPNC---ATYNAFITGYCRVNELDKALHLFSTMANNGIRPN---RVTHNILVHALCKKGLLGDAV 243 (572)
Q Consensus 170 ~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~ 243 (572)
+-..-+++. |..++. ..+ ..+...++.|+.+-+..+++. +..++ ..-. +.+...+..|+.+-+.
T Consensus 94 ~~v~~Ll~~----ga~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~g~-t~L~~A~~~g~~~~v~ 163 (437)
T 1n11_A 94 NMVKLLLEN----NANPNLATTAGH-TPLHIAAREGHVETVLALLEK----EASQACMTKKGF-TPLHVAAKYGKVRVAE 163 (437)
T ss_dssp HHHHHHHHH----TCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTSC-CHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhC----CCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhC----CCCCcCCCCCCC-CHHHHHHHcCCHHHHH
Confidence 655444443 333321 112 234455567777666555543 32222 1111 2344456677766554
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHH
Q 008266 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAY--NVLINGFCLNGDISSAFAYFCQ 321 (572)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~ 321 (572)
-+++ .+......+..-. +.+...+..|+.+ +++.+.+.|..++...+ .+.+...+..|+.+-+..+
T Consensus 164 ~Ll~----~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L--- 231 (437)
T 1n11_A 164 LLLE----RDAHPNAAGKNGL-TPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL--- 231 (437)
T ss_dssp HHHH----TTCCTTCCCSSCC-CHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH---
T ss_pred HHHh----CCCCCCCCCCCCC-CHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH---
Confidence 4443 3321100111111 2234445667654 34444555544433211 1234445567776544443
Q ss_pred HHHCCCCCCHhH--HHHHHHHHHHcCCHHHHHHH
Q 008266 322 MLKRGFLPDVIT--YNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 322 m~~~g~~p~~~~--~~~ll~~~~~~g~~~~A~~~ 353 (572)
.+.|..++... -.+.+...+..|..+-...+
T Consensus 232 -l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 264 (437)
T 1n11_A 232 -LQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264 (437)
T ss_dssp -HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred -HHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 34443333211 11223344566665544433
No 340
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=22.73 E-value=2.4e+02 Score=21.09 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008266 451 SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLR-RGITPDIITYTELIKGHCARGNMKEAEEVF 529 (572)
Q Consensus 451 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 529 (572)
.+.+|..-+++.... .+|......++..+-. -++.|.++.....+ .|+ .+.++...++...+.|-.++. +.|
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~--t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEF--TFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 567788888877654 4566666666655433 24455555555443 465 456677777777777766554 556
Q ss_pred HHHHH
Q 008266 530 AKIQT 534 (572)
Q Consensus 530 ~~m~~ 534 (572)
..|..
T Consensus 76 ~~m~~ 80 (119)
T 1wty_A 76 LEMLE 80 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 341
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.66 E-value=2.6e+02 Score=21.35 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=10.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 008266 406 VIIDGYGRCGDLSNAFSIRDLM 427 (572)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~~ 427 (572)
.++.-|...|+.++|...++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 342
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.65 E-value=2.1e+02 Score=22.39 Aligned_cols=34 Identities=12% Similarity=-0.072 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008266 417 LSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG 450 (572)
Q Consensus 417 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 450 (572)
.-.|.++++.+.+.++..+..|.-.-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4455555555555544444444333344444333
No 343
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.31 E-value=1.7e+02 Score=23.54 Aligned_cols=44 Identities=11% Similarity=0.064 Sum_probs=20.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcC
Q 008266 337 LLNCLCKQGKLDEASHFYGVLSKT--GVAPDQISYKTIIQGLCIHG 380 (572)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g 380 (572)
++..+...+..-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444555555555444 33344444444445555544
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.05 E-value=1.6e+02 Score=22.54 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHhhCCC
Q 008266 169 LEKADHVIREMSEMRP 184 (572)
Q Consensus 169 ~~~A~~~~~~~~~~~~ 184 (572)
.-.|.++++.+.+.++
T Consensus 26 ~~sa~ei~~~l~~~~~ 41 (131)
T 2o03_A 26 FRSAQELHDELRRRGE 41 (131)
T ss_dssp CEEHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhCC
Confidence 3334444444433333
No 345
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.95 E-value=5e+02 Score=24.40 Aligned_cols=56 Identities=5% Similarity=-0.072 Sum_probs=29.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008266 443 ILAETRGGSIFDAFSLKKEMLLDG----------------IFPDVFTYNLLIGASCNLGHIHLALQLYDEML 498 (572)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~m~~~~----------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (572)
+.......+.+++.+.++++...- ..+-......+...|...|+.++|..++++..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444555566667776666664320 01112233344455556666666666666654
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.91 E-value=4.8e+02 Score=25.27 Aligned_cols=135 Identities=13% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008266 210 LFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 210 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
.++-..+.|++--...|..-.+.+...|++++|.++--.....-. .+..|.+.+-..-...|+..-.+..|..+.+
T Consensus 348 A~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giL----Rt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~ 423 (494)
T 1bpo_A 348 ALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGIL----RTPDTIRRFQSVPAQPGQTSPLLQYFGILLD 423 (494)
T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSS----CSHHHHHHHTTSCCCTTSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccc----cCHHHHHHHhcCCCCCCCCCHHHHHHHHHhc
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008266 290 KNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVL 357 (572)
Q Consensus 290 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 357 (572)
.| ..+..----+++.-...|+.+-..+++.+ |.-++.-=+.=+.+..+...|..+|.+.
T Consensus 424 ~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e--------~KL~~SEeLGDlvk~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 424 QG-QLNKYESLELCRPVLQQGRKQLLEKWLKE--------DKLECSEELGDLVKSVDPTLALSVYLRA 482 (494)
T ss_dssp HS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH--------TCSCCCHHHHHHHHHHCSHHHHHHHHHH
T ss_pred cC-ccchHHhhHHhHHHHhccHHHHHHHHHhc--------CCccccHHhHhhhhhcCHHHHHHHHHHc
No 347
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.80 E-value=68 Score=20.71 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 008266 170 EKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPN 222 (572)
Q Consensus 170 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 222 (572)
++.++.+..|. |..+......++.+ ..|+++.|+..+-.|...+..|+
T Consensus 10 ee~l~~L~emF---P~ld~~~I~~vL~a--~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDMF---PNMDQEVIRSVLEA--QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHHC---SSSCHHHHHHHHTT--TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHHH--cCCCHHHHHHHHHcCcCCCCCCC
Confidence 34444444442 44444433333332 45677777777777765555554
No 348
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.54 E-value=3.4e+02 Score=22.28 Aligned_cols=142 Identities=15% Similarity=0.052 Sum_probs=66.2
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008266 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILV 230 (572)
Q Consensus 151 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 230 (572)
++...-...+..+.+.|..+ +...+..+.. .++...-...+.++.+.+..+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 45555555566666666533 3333333333 245555555666666666533 3333333332 34555555566
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 008266 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNG 310 (572)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 310 (572)
.++.+.++.+ +...+..++. . ++..+-...+.++.+.|+. ++...+..+.. .++..+-...+.++.+.+
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~----d--~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK----D--EDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT----C--SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcHH-HHHHHHHHHh----C--CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 6666666543 3333434443 1 4444444445555555442 23333333332 234444444444444444
Q ss_pred C
Q 008266 311 D 311 (572)
Q Consensus 311 ~ 311 (572)
.
T Consensus 172 ~ 172 (211)
T 3ltm_A 172 G 172 (211)
T ss_dssp S
T ss_pred c
Confidence 3
No 349
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.46 E-value=1.3e+02 Score=25.55 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=7.1
Q ss_pred HcCCHHHHHHHHHHHH
Q 008266 378 IHGDIVKAREFLLSML 393 (572)
Q Consensus 378 ~~g~~~~A~~~~~~~~ 393 (572)
..|+...+.++.+.+.
T Consensus 219 ~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQ 234 (237)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444444444444443
No 350
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.15 E-value=2.1e+02 Score=20.73 Aligned_cols=43 Identities=12% Similarity=0.221 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008266 524 EAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 524 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
.|.++.+++...|+.|+..+...++..|..-+- + +.++.++++
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWm 69 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELI 69 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHH
Confidence 466777888888999988888888888776663 2 555555554
No 351
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.87 E-value=3.4e+02 Score=22.01 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=16.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 008266 194 FITGYCRVNELDKALHLFSTMANNGIRPNR 223 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 223 (572)
.+...+..|+.+.-.++.+.+.+.|..++.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 334444555555555566666666655543
No 352
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.75 E-value=2.8e+02 Score=21.10 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCC
Q 008266 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD--ISSAFAYFCQMLKRGFL 328 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~ 328 (572)
....++.-|...|+.++|.+.++++.... -....+...+..++-+.+. .+.+..++..+...|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34556677777777777777777765111 1112233333444444322 34556666666655543
No 353
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.75 E-value=1.8e+02 Score=20.87 Aligned_cols=51 Identities=8% Similarity=0.002 Sum_probs=32.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHH
Q 008266 482 CNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC-----ARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~~ 534 (572)
...|++-+|.+++++.-...-.|....|..+|.... +.|+. |..++.+...
T Consensus 12 fn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 12 WRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 345888888888888776542233455666655332 45666 7777777766
No 354
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.39 E-value=2.5e+02 Score=23.39 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=5.3
Q ss_pred HhCCChhhHHHHH
Q 008266 129 CLGGKIGTALWLR 141 (572)
Q Consensus 129 ~~~g~~~~A~~~~ 141 (572)
++.|+.+....++
T Consensus 14 ~~~g~~~~v~~ll 26 (231)
T 3aji_A 14 AYSGKLDELKERI 26 (231)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHH
Confidence 3344444444333
Done!