Query 008267
Match_columns 572
No_of_seqs 396 out of 2100
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 21:38:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02669 Peptidase_C19M A subfa 100.0 2.9E-78 6.3E-83 634.7 38.0 402 64-557 17-440 (440)
2 KOG0944 Ubiquitin-specific pro 100.0 5.4E-78 1.2E-82 609.9 25.0 437 60-559 176-762 (763)
3 KOG1865 Ubiquitin carboxyl-ter 100.0 1.6E-67 3.6E-72 529.6 23.0 300 199-559 109-410 (545)
4 COG5207 UBP14 Isopeptidase T [ 100.0 3.3E-67 7.2E-72 514.0 20.6 442 56-558 166-748 (749)
5 KOG1873 Ubiquitin-specific pro 100.0 1E-66 2.2E-71 532.7 13.9 502 2-558 22-876 (877)
6 cd02663 Peptidase_C19G A subfa 100.0 5E-63 1.1E-67 497.5 27.4 281 200-557 1-300 (300)
7 cd02660 Peptidase_C19D A subfa 100.0 2.3E-62 5E-67 500.7 31.4 326 199-557 1-328 (328)
8 cd02671 Peptidase_C19O A subfa 100.0 2.8E-61 6.1E-66 486.6 31.3 301 192-557 18-332 (332)
9 cd02668 Peptidase_C19L A subfa 100.0 1.8E-61 3.8E-66 491.7 29.5 295 200-557 1-324 (324)
10 cd02664 Peptidase_C19H A subfa 100.0 6.9E-61 1.5E-65 486.9 27.2 296 200-557 1-327 (327)
11 cd02667 Peptidase_C19K A subfa 100.0 1.1E-60 2.4E-65 475.1 25.0 256 200-557 1-279 (279)
12 KOG1867 Ubiquitin-specific pro 100.0 9.8E-61 2.1E-65 496.4 21.9 453 54-565 34-490 (492)
13 cd02658 Peptidase_C19B A subfa 100.0 2.6E-59 5.7E-64 474.2 30.3 292 200-557 1-311 (311)
14 cd02657 Peptidase_C19A A subfa 100.0 2.1E-59 4.6E-64 473.7 27.3 288 200-557 1-305 (305)
15 cd02659 peptidase_C19C A subfa 100.0 1.6E-58 3.5E-63 473.6 29.3 309 197-560 1-333 (334)
16 cd02661 Peptidase_C19E A subfa 100.0 1.5E-58 3.1E-63 468.1 28.6 299 199-557 2-304 (304)
17 COG5560 UBP12 Ubiquitin C-term 100.0 2.8E-60 6E-65 477.0 15.2 342 196-560 263-823 (823)
18 COG5533 UBP5 Ubiquitin C-termi 100.0 6.1E-56 1.3E-60 411.0 21.5 315 198-559 71-414 (415)
19 cd02662 Peptidase_C19F A subfa 100.0 5.4E-53 1.2E-57 410.0 22.8 216 200-557 1-240 (240)
20 KOG1868 Ubiquitin C-terminal h 100.0 9.1E-51 2E-55 428.4 16.2 324 192-563 295-650 (653)
21 cd02674 Peptidase_C19R A subfa 100.0 4.6E-49 9.9E-54 382.0 20.2 227 200-557 1-230 (230)
22 KOG1866 Ubiquitin carboxyl-ter 100.0 1.4E-50 2.9E-55 413.1 6.1 324 192-562 89-437 (944)
23 cd02673 Peptidase_C19Q A subfa 100.0 4.1E-47 8.9E-52 366.2 20.8 236 201-557 2-245 (245)
24 COG5077 Ubiquitin carboxyl-ter 100.0 5E-48 1.1E-52 394.7 7.0 305 192-563 187-515 (1089)
25 cd02666 Peptidase_C19J A subfa 100.0 8.4E-47 1.8E-51 380.2 15.7 304 199-557 2-343 (343)
26 cd02665 Peptidase_C19I A subfa 100.0 5.7E-46 1.2E-50 350.8 18.0 218 200-557 1-228 (228)
27 PF00443 UCH: Ubiquitin carbox 100.0 1.9E-45 4.1E-50 364.6 18.5 258 198-556 1-269 (269)
28 KOG1870 Ubiquitin C-terminal h 100.0 6.4E-43 1.4E-47 389.2 18.3 344 192-560 240-842 (842)
29 cd02257 Peptidase_C19 Peptidas 100.0 2.4E-41 5.1E-46 331.5 22.6 245 200-557 1-255 (255)
30 cd02672 Peptidase_C19P A subfa 100.0 8.7E-42 1.9E-46 333.7 13.4 241 195-557 12-268 (268)
31 KOG4598 Putative ubiquitin-spe 100.0 4.1E-42 9E-47 347.7 3.9 302 192-560 81-442 (1203)
32 KOG2026 Spindle pole body prot 100.0 9.8E-40 2.1E-44 312.1 19.2 401 64-559 30-441 (442)
33 KOG1863 Ubiquitin carboxyl-ter 100.0 1.7E-39 3.8E-44 370.4 13.5 306 194-564 165-490 (1093)
34 PF13423 UCH_1: Ubiquitin carb 100.0 2.9E-35 6.3E-40 295.1 23.2 285 199-538 1-295 (295)
35 cd02670 Peptidase_C19N A subfa 100.0 1.1E-35 2.3E-40 283.3 16.6 199 286-557 22-241 (241)
36 KOG1864 Ubiquitin-specific pro 100.0 1.1E-35 2.4E-40 313.8 16.6 311 195-559 229-572 (587)
37 KOG1872 Ubiquitin-specific pro 100.0 1.1E-30 2.5E-35 258.3 8.6 316 199-561 106-471 (473)
38 KOG1871 Ubiquitin-specific pro 100.0 9.7E-30 2.1E-34 245.0 11.5 309 198-559 28-419 (420)
39 KOG1275 PAB-dependent poly(A) 99.8 4.3E-20 9.4E-25 194.2 13.8 323 197-556 498-860 (1118)
40 PF02148 zf-UBP: Zn-finger in 99.8 2.4E-19 5.1E-24 134.2 4.0 63 66-134 1-63 (63)
41 KOG0804 Cytoplasmic Zn-finger 99.2 3.2E-12 6.9E-17 126.2 2.8 62 63-131 228-289 (493)
42 smart00290 ZnF_UBP Ubiquitin C 99.1 9.7E-11 2.1E-15 83.6 4.3 49 65-120 1-49 (50)
43 PF15499 Peptidase_C98: Ubiqui 98.7 6.7E-07 1.5E-11 83.3 14.5 101 413-557 171-275 (275)
44 KOG1864 Ubiquitin-specific pro 97.4 0.00015 3.2E-09 78.2 4.7 106 201-306 34-153 (587)
45 PF08715 Viral_protease: Papai 97.1 0.013 2.8E-07 58.4 14.1 100 196-346 100-200 (320)
46 KOG1887 Ubiquitin carboxyl-ter 93.3 0.013 2.9E-07 63.8 -1.8 217 286-559 548-790 (806)
47 PF05408 Peptidase_C28: Foot-a 92.8 0.058 1.3E-06 48.2 1.7 29 516-544 137-165 (193)
48 PF09416 UPF1_Zn_bind: RNA hel 89.2 0.27 5.9E-06 43.0 2.4 60 66-129 3-69 (152)
49 KOG3556 Familial cylindromatos 86.2 1 2.2E-05 46.9 4.6 52 390-464 499-550 (724)
50 PF05408 Peptidase_C28: Foot-a 84.6 1.1 2.4E-05 40.3 3.6 31 197-227 32-64 (193)
51 PRK14890 putative Zn-ribbon RN 76.0 0.95 2.1E-05 32.6 0.2 23 63-87 36-58 (59)
52 COG2888 Predicted Zn-ribbon RN 73.5 1.2 2.5E-05 32.0 0.2 24 62-87 37-60 (61)
53 COG5207 UBP14 Isopeptidase T [ 66.0 1.4 3E-05 45.9 -1.1 49 64-117 23-74 (749)
54 PF01473 CW_binding_1: Putativ 63.2 8.9 0.00019 20.7 2.3 15 522-536 2-16 (19)
55 COG3478 Predicted nucleic-acid 62.1 7.6 0.00016 28.4 2.3 37 411-447 3-41 (68)
56 PF10571 UPF0547: Uncharacteri 60.9 4.6 0.0001 24.0 0.9 23 65-87 2-24 (26)
57 PF02099 Josephin: Josephin; 54.9 18 0.00039 32.4 4.1 31 505-539 99-129 (157)
58 COG5574 PEX10 RING-finger-cont 49.7 2.6 5.6E-05 40.3 -2.1 48 64-133 216-264 (271)
59 KOG0944 Ubiquitin-specific pro 48.0 12 0.00026 40.7 2.2 47 64-119 25-73 (763)
60 PF13240 zinc_ribbon_2: zinc-r 43.2 15 0.00032 21.1 1.1 21 65-85 1-21 (23)
61 PF14369 zf-RING_3: zinc-finge 42.6 13 0.00027 24.0 0.8 12 120-131 2-13 (35)
62 PF13923 zf-C3HC4_2: Zinc fing 41.8 17 0.00037 23.7 1.5 23 66-89 1-23 (39)
63 cd00729 rubredoxin_SM Rubredox 41.5 13 0.00028 23.7 0.8 13 77-89 2-14 (34)
64 KOG1802 RNA helicase nonsense 38.2 30 0.00066 37.9 3.3 65 61-129 58-129 (935)
65 smart00154 ZnF_AN1 AN1-like Zi 35.5 36 0.00078 22.5 2.2 25 66-90 1-25 (39)
66 PF14353 CpXC: CpXC protein 34.0 63 0.0014 27.6 4.2 12 412-423 38-49 (128)
67 cd00350 rubredoxin_like Rubred 33.7 21 0.00045 22.5 0.8 11 77-87 1-11 (33)
68 COG1997 RPL43A Ribosomal prote 33.3 31 0.00068 27.1 1.9 27 64-90 36-66 (89)
69 PHA00616 hypothetical protein 31.5 5.5 0.00012 27.1 -2.2 24 78-101 2-25 (44)
70 PRK12286 rpmF 50S ribosomal pr 31.5 42 0.00091 24.3 2.2 25 61-86 25-49 (57)
71 TIGR01031 rpmF_bact ribosomal 31.2 39 0.00084 24.3 2.0 24 62-86 25-48 (55)
72 KOG2906 RNA polymerase III sub 30.8 1.3E+02 0.0028 24.3 4.9 21 413-433 66-86 (105)
73 PF08274 PhnA_Zn_Ribbon: PhnA 30.6 38 0.00083 20.9 1.6 23 64-86 3-28 (30)
74 PF09855 DUF2082: Nucleic-acid 30.5 43 0.00093 24.9 2.1 34 413-446 1-36 (64)
75 KOG0317 Predicted E3 ubiquitin 29.4 27 0.00058 34.1 1.1 33 63-102 239-271 (293)
76 PHA00626 hypothetical protein 28.9 37 0.00079 24.3 1.4 24 64-89 12-35 (59)
77 PF03292 Pox_P4B: Poxvirus P4B 27.9 90 0.002 33.9 4.7 25 205-229 244-270 (666)
78 smart00547 ZnF_RBZ Zinc finger 27.1 35 0.00076 19.9 1.0 22 64-85 3-24 (26)
79 PF07649 C1_3: C1-like domain; 26.9 39 0.00084 20.6 1.2 23 65-87 2-25 (30)
80 PF13248 zf-ribbon_3: zinc-rib 26.1 40 0.00087 19.9 1.1 22 64-85 3-24 (26)
81 PF00641 zf-RanBP: Zn-finger i 26.1 13 0.00028 22.8 -1.1 24 63-86 4-27 (30)
82 cd04474 RPA1_DBD_A RPA1_DBD_A: 25.1 3.1E+02 0.0067 22.3 6.7 32 527-558 67-98 (104)
83 COG0333 RpmF Ribosomal protein 24.7 57 0.0012 23.6 1.8 23 63-86 27-49 (57)
84 TIGR00686 phnA alkylphosphonat 24.3 60 0.0013 26.8 2.1 23 64-86 3-28 (109)
85 PRK10220 hypothetical protein; 23.7 64 0.0014 26.6 2.2 23 64-86 4-29 (111)
86 KOG2935 Ataxin 3/Josephin [Gen 23.5 12 0.00027 35.4 -2.2 53 506-562 104-164 (315)
87 PF08882 Acetone_carb_G: Aceto 22.9 40 0.00087 27.9 0.9 55 74-130 12-84 (112)
88 KOG1867 Ubiquitin-specific pro 22.8 28 0.0006 37.5 -0.0 25 278-302 157-181 (492)
89 PF08770 SoxZ: Sulphur oxidati 22.7 3.3E+02 0.0071 22.2 6.2 55 501-560 13-77 (100)
90 cd00524 SORL Superoxide reduct 22.2 3.9E+02 0.0084 20.9 6.5 46 506-558 17-66 (86)
91 PRK03824 hypA hydrogenase nick 21.7 1.9E+02 0.0041 25.1 5.0 17 330-346 66-82 (135)
92 PF14446 Prok-RING_1: Prokaryo 21.5 68 0.0015 22.9 1.7 24 64-87 6-31 (54)
93 PF11164 DUF2948: Protein of u 21.2 5.1E+02 0.011 22.6 7.3 71 430-521 30-103 (138)
94 PF14803 Nudix_N_2: Nudix N-te 21.1 61 0.0013 20.7 1.3 12 75-86 20-31 (34)
95 PF08792 A2L_zn_ribbon: A2L zi 20.8 74 0.0016 20.1 1.6 25 63-87 3-31 (33)
96 KOG0704 ADP-ribosylation facto 20.7 64 0.0014 32.4 1.9 24 64-87 20-49 (386)
97 PF07150 DUF1390: Protein of u 20.4 81 0.0017 30.0 2.5 35 75-117 5-39 (229)
98 PHA02942 putative transposase; 20.2 87 0.0019 32.6 3.0 24 64-87 326-352 (383)
No 1
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-78 Score=634.67 Aligned_cols=402 Identities=23% Similarity=0.361 Sum_probs=318.8
Q ss_pred CcccCCCCCCCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCceeeccCCceeeCCchhhHHhhhc
Q 008267 64 PRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVVLAH 143 (572)
Q Consensus 64 ~~C~~C~~~~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~~~C~~c~~~v~~~~~~~~~~~~~ 143 (572)
..|+.|. ...++|+||+||.++|| ++.++||+.|+ .+++|+++|+++++.+|||+|+++|+|+.+++++....
T Consensus 17 ~~C~~~~--~~~n~~~CL~cg~~~~g-~~~~~ha~~H~----~~~~H~~~v~l~t~~~yc~~~~~~v~d~~l~~i~~~~~ 89 (440)
T cd02669 17 KVCSVSL--SNLNVYACLVCGKYFQG-RGKGSHAYTHS----LEDNHHVFLNLETLKFYCLPDNYEIIDSSLDDIKYVLN 89 (440)
T ss_pred ccccccC--CCCcEEEEcccCCeecC-CCCCcHHHHHh----hccCCCEEEECCCCCEEEeCCCCEEeCccHHHHHHHhc
Confidence 4599995 56889999999988777 66789999999 88999999999999999999999999999987763311
Q ss_pred eeccccCCChhhhhhhcccCCCCCCCChhhhhhcccCCCCCCCCCCCCCCCCCcccccccCCchhhHHHHHHHHhCChhH
Q 008267 144 TTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGDLPRGLRGLNNLGNTCFMNSVLQALFHTPPL 223 (572)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~f 223 (572)
+. .+++ +...+..+.. .+.+..+..+.+|++||.|+|||||||||||+|+|+|+|
T Consensus 90 -------~~---~~~~-------------~i~~~~~~~~--~~~~~~~~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~l 144 (440)
T cd02669 90 -------PT---YTKE-------------QISDLDRDPK--LSRDLDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKPI 144 (440)
T ss_pred -------CC---CCHH-------------HHHHhhhccc--cccccCCCCccCCccCccCCCCchHHHHHHHHHHCCHHH
Confidence 10 0000 0000000000 011224467789999999999999999999999999999
Q ss_pred HHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCC--CCccChHHHHHHHHHhc-CCCcccccCchHHHHHHHHHH
Q 008267 224 RNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGD--RMPYSPAKFLYSWWRHA-SNLASYEQQDAHEFFISMLDG 300 (572)
Q Consensus 224 r~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~i~p~~~l~~l~~~~-~~f~~~~QqDA~Efl~~lLd~ 300 (572)
|++|+...+.... .....++.++|..+++++|++. +..++|.+|+..++... +.|.+++||||||||.+|||.
T Consensus 145 r~~~l~~~~~~~~----~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~ 220 (440)
T cd02669 145 RNFFLLYENYENI----KDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNT 220 (440)
T ss_pred HHHHhhccccccc----cCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHHHHHHHHH
Confidence 9999986543211 1124579999999999999875 46799999999998764 578999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCC---------------CeeeeeeCCeeeeeccCCCCCCCc
Q 008267 301 IHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACG---------------FTSTTFDPCVDFSLDLEPNQGSSM 365 (572)
Q Consensus 301 L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~---------------~~s~~~e~f~~lsL~i~~~~~~~~ 365 (572)
||+++..... ...++|+++|+|++.+.++|..|. .++++.+||++|+|+||.......
T Consensus 221 L~~~l~~~~~-------~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~ 293 (440)
T cd02669 221 LHKDLGGSKK-------PNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKD 293 (440)
T ss_pred HHHHhccCCC-------CCCCcceeccCceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccccc
Confidence 9998764321 123689999999999999987654 356778999999999997531100
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEEEEEEeE
Q 008267 366 KTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFE 445 (572)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~ 445 (572)
+ ......+..+|++||+. |.|+.|...+.++|+++|.++|+||+||||||.
T Consensus 294 ------------~-----~~~~~l~~~~l~e~L~k------------y~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~ 344 (440)
T cd02669 294 ------------G-----NEENIIPQVPLKQLLKK------------YDGKTETELKDSLKRYLISRLPKYLIFHIKRFS 344 (440)
T ss_pred ------------c-----ccccccCcccHHHHHHh------------cCCccceecccceEEEEEeeCCcEEEEEEeccc
Confidence 0 00011135789999864 556778778888999999999999999999999
Q ss_pred ecCCCccccccceeeecCCC-CCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCC-CCCcEEEE
Q 008267 446 HSSVRKMSRKVDRYLQFPLS-LDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKL-DAGHYVTY 523 (572)
Q Consensus 446 ~~~~~~~~~Ki~~~V~fp~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~-~~GHY~ay 523 (572)
++. ....|+.+.|.||.. |||++|+.... ........|+|+|||+|.|+. ++|||++|
T Consensus 345 ~~~--~~~~K~~t~V~FP~~~LDm~~y~~~~~------------------~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~ 404 (440)
T cd02669 345 KNN--FFKEKNPTIVNFPIKNLDLSDYVHFDK------------------PSLNLSTKYNLVANIVHEGTPQEDGTWRVQ 404 (440)
T ss_pred CCC--CccccCCCEEECCCCccchhhhhCccc------------------cccCCCceEEEEEEEEEeccCCCCeeEEEE
Confidence 985 567899999999996 89999986321 012356799999999999996 99999999
Q ss_pred EEe--CCcEEEEcCcceeeeCcccccCCceeEEEEE
Q 008267 524 LRL--SNKWYKCDDAWITEVNENTVRAAQGYMMFYV 557 (572)
Q Consensus 524 vr~--~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~ 557 (572)
+|. +++||+|||+.|+++++++|+.++||||||+
T Consensus 405 v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 405 LRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 996 6899999999999999999999999999996
No 2
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-78 Score=609.94 Aligned_cols=437 Identities=22% Similarity=0.445 Sum_probs=353.7
Q ss_pred CCCCCcccCCCCCCCCCcEEecccCccccCC-----CCCCchhhhhccCCCCCCCceEEEEcC-----CCceeeccCCce
Q 008267 60 SSEVPRCGVCGDSSCPRLYACMACAAVSCHV-----PPHSSHVAIHATKTSSACSHEIAVDVD-----RAELFCCACRDQ 129 (572)
Q Consensus 60 ~~~~~~C~~C~~~~~~~~~~Cl~C~~~~c~~-----~~~~~h~~~H~~~~~~~~~H~~~~~~~-----~~~~~C~~c~~~ 129 (572)
+...|+|+.|+ ...|||+||+||.+|||| .++|+||..|| ++++||+||.|+ ..+||||.||+.
T Consensus 176 ~~~gwkCs~CD--L~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HY----r~tghPLaVKLgsIs~dg~DvycY~cDd~ 249 (763)
T KOG0944|consen 176 PPSGWKCSKCD--LTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHY----RETGHPLAVKLGSISPDGADVYCYDCDDE 249 (763)
T ss_pred CCCcceecccC--cccceEEEeccCceeecceeecCCCCCcchHHhh----hhcCCceEEEecccCCCccceeeeccccc
Confidence 44569999998 568999999999999996 45699999999 899999999994 489999999999
Q ss_pred eeCCchhhHHhhhceeccccCCChhhhhhhcccCCCCCCCChhhhhhcccCCCCCCCCCCCCCCCCCcccccccCCchhh
Q 008267 130 VYDRDFDAAVVLAHTTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGDLPRGLRGLNNLGNTCF 209 (572)
Q Consensus 130 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCY 209 (572)
|.||.+. .|+.+||++.....++++...+++.-....-+|.++.+++.+ ..+.++||++||+|+||+||
T Consensus 250 v~dPnl~-----~hl~hfGId~~~m~kteksl~elel~~N~i~Ew~~~~esg~~------l~p~~gpgytGl~NlGNSCY 318 (763)
T KOG0944|consen 250 VRDPNLE-----SHLSHFGIDMAKMDKTEKSLVELELDQNRIWEWEALEESGAP------LEPLFGPGYTGLINLGNSCY 318 (763)
T ss_pred ccCccHH-----HHHHhcCccHHHhccchhHHHHHHHHhhcccCceeeccCCCc------cccccCCCccceeecCcchh
Confidence 9999874 788899999877666666543322211122255556554444 44789999999999999999
Q ss_pred HHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCC----------CccChHHHHHHHHHhc
Q 008267 210 MNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDR----------MPYSPAKFLYSWWRHA 279 (572)
Q Consensus 210 ~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~----------~~i~p~~~l~~l~~~~ 279 (572)
||||||+|+.+|.|...++.. ...+.|.. ..+..+|.|||.+|...|.+++. .+|+|.+|+..+|+.+
T Consensus 319 lnSVmQ~Lf~i~~fq~~~~~~-~~~f~~~~-~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igknH 396 (763)
T KOG0944|consen 319 LNSVMQSLFSIPSFQRRYLEQ-ERIFNCYP-KDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKNH 396 (763)
T ss_pred HHHHHHHheecccHHHhhccc-cceeecCC-CCcchhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCCC
Confidence 999999999999999999877 44455554 34678999999999999998642 3689999999999999
Q ss_pred CCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeeccCC
Q 008267 280 SNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEP 359 (572)
Q Consensus 280 ~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~~ 359 (572)
+.|.+.+||||+|||.+||+.|.+...... ..+.++|.+.++.++.|..|+.++++.++.+.|.|+||.
T Consensus 397 peFst~~QQDA~EFllfLl~ki~~n~rs~~-----------~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~ 465 (763)
T KOG0944|consen 397 PEFSTNRQQDAQEFLLFLLEKIRENSRSSL-----------PNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPM 465 (763)
T ss_pred ccccchhhhhHHHHHHHHHHHHhhcccccC-----------CCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccc
Confidence 999999999999999999999998533221 126789999999999999999999999999999999985
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEE
Q 008267 360 NQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCF 439 (572)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i 439 (572)
.. ..+..+++.+||+.|+.+ .+. +|+|..|+.+..++|+.+|++||++|+|
T Consensus 466 ~~-------------------------~v~~~v~~~~cleaff~p-q~~---df~s~ac~~K~~a~kt~~~ksfP~yLii 516 (763)
T KOG0944|consen 466 TN-------------------------EVREKVPISACLEAFFEP-QVD---DFWSTACGEKKGATKTTRFKSFPDYLII 516 (763)
T ss_pred cc-------------------------cccccCCHHHHHHHhcCC-cch---hhhhHhhcCccccccccccccCCceEEE
Confidence 21 123568999999999999 433 4999999999999999999999999999
Q ss_pred EEEEeEecCCCccccccceeeecCCCCCCccccchhhh------------------------------------------
Q 008267 440 HIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSIL------------------------------------------ 477 (572)
Q Consensus 440 ~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~------------------------------------------ 477 (572)
|++||.+. .|..+|++..|++|+.||++.|++.+..
T Consensus 517 qv~rf~~~--dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~ 594 (763)
T KOG0944|consen 517 QVGRFTLQ--DWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYY 594 (763)
T ss_pred EeeEEEec--CceeeeeccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhh
Confidence 99999995 5999999999999999999999876620
Q ss_pred --------------------------------------------------------------ccccCCC-------ccCC
Q 008267 478 --------------------------------------------------------------RSRFGNR-------FFPF 488 (572)
Q Consensus 478 --------------------------------------------------------------~~~~~~~-------~~~~ 488 (572)
....++- +...
T Consensus 595 tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~ 674 (763)
T KOG0944|consen 595 TGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHM 674 (763)
T ss_pred hcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcc
Confidence 0000000 0000
Q ss_pred C---------CC---------CCCCCCCCCccEEEEEEEeeeCC-CCCCcEEEEEEeCCcEEEEcCcceeeeCcccccCC
Q 008267 489 D---------GD---------ESNTLNEPSSEFELFAVVTHTGK-LDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRAA 549 (572)
Q Consensus 489 ~---------~~---------~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~ayvr~~~~W~~~dD~~V~~v~~~~v~~~ 549 (572)
+ .. ......+...+|.|+|+|+|.|+ +++|||+|++|..|+|+.|||++|- ..++....
T Consensus 675 d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV~hirKegkWVlfNDeKv~--~S~~ppK~ 752 (763)
T KOG0944|consen 675 DIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSGHYVCHIRKEGKWVLFNDEKVA--ASQEPPKD 752 (763)
T ss_pred cccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCcceEEEEeecCcEEEEcchhhh--hccCChhh
Confidence 0 00 00112356679999999999999 9999999999999999999999998 33345567
Q ss_pred ceeEEEEEEe
Q 008267 550 QGYMMFYVQK 559 (572)
Q Consensus 550 ~aYlLfY~r~ 559 (572)
.+||+||+|.
T Consensus 753 lgYvY~y~R~ 762 (763)
T KOG0944|consen 753 LGYVYLYTRI 762 (763)
T ss_pred cceEEEEEec
Confidence 8999999984
No 3
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-67 Score=529.59 Aligned_cols=300 Identities=35% Similarity=0.719 Sum_probs=272.6
Q ss_pred cccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHHHHHh
Q 008267 199 RGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRH 278 (572)
Q Consensus 199 ~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~ 278 (572)
.||.|+|||||+|||||||.++|||.+||+...|.. .|.. ...|++|+|+..+.........+|+|..|+..|...
T Consensus 109 ~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~-~C~~---~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~L~~I 184 (545)
T KOG1865|consen 109 AGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSR-SCHR---AKFCMLCTFQAHITRALHNPGHPISPSQILSNLRNI 184 (545)
T ss_pred cceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhh-hccc---cCeeeehHHHHHHHHHhcCCCCccChHHHHHhhhhh
Confidence 699999999999999999999999999999987764 4553 378999999999988888888899999999999999
Q ss_pred cCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeeccC
Q 008267 279 ASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLE 358 (572)
Q Consensus 279 ~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~ 358 (572)
...|..+.|.||||||++++|.|+.-.-. .........++.++|+++|+|.++++|+|..|++++.++|+.++|+|+|.
T Consensus 185 ~~~f~~grQEDAHEFLr~~vd~mqk~cL~-g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~dltvei~ 263 (545)
T KOG1865|consen 185 SAHFGRGRQEDAHEFLRFTVDAMQKACLP-GHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLDLTLEIQ 263 (545)
T ss_pred cccccCCchhhHHHHHHHHHHHHHHhhcC-CCccCCcccccceehhhhhccchhhceecccCCCcccccccccceEEEec
Confidence 99999999999999999999999987641 11222223345589999999999999999999999999999999999998
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEE
Q 008267 359 PNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSC 438 (572)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~ 438 (572)
. ..+|+++|++|+.+|.|+|+|.|.|++|+.+..|.|+++|.++|+||+
T Consensus 264 d-------------------------------~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLT 312 (545)
T KOG1865|consen 264 D-------------------------------ASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLT 312 (545)
T ss_pred c-------------------------------chhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEE
Confidence 3 359999999999999999999999999999999999999999999999
Q ss_pred EEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCC-CCC
Q 008267 439 FHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGK-LDA 517 (572)
Q Consensus 439 i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~ 517 (572)
||||||+.. ...||..+|.||+.|||.|||+.. ...+..|.|+|||+|.|. ..+
T Consensus 313 i~LKRF~~~----~~gKI~K~I~fPE~LDl~PyMS~~---------------------~e~s~~Y~LYavlVH~g~~~~~ 367 (545)
T KOG1865|consen 313 LHLKRFSNG----TGGKISKPVSFPETLDLQPYMSQP---------------------NEGSTVYKLYAVLVHLGTSCHS 367 (545)
T ss_pred EeeehhccC----cccccccccCCcccccccccccCC---------------------CCCCceEEEEEEEEeccccccC
Confidence 999999874 478999999999999999999842 346789999999999999 999
Q ss_pred CcEEEEEEe-CCcEEEEcCcceeeeCcccccCCceeEEEEEEe
Q 008267 518 GHYVTYLRL-SNKWYKCDDAWITEVNENTVRAAQGYMMFYVQK 559 (572)
Q Consensus 518 GHY~ayvr~-~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r~ 559 (572)
|||++|||. +|.||.+||+.|+.++.+.|++.+||||||.|.
T Consensus 368 GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 368 GHYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred CceEEEEEcCCCceEEccCceeeeccccceecccceEEEEEee
Confidence 999999996 679999999999999999999999999999997
No 4
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-67 Score=514.04 Aligned_cols=442 Identities=20% Similarity=0.347 Sum_probs=335.0
Q ss_pred cccCCCCCCcccCCCCCCCCCcEEecccCccccCC----CCCCchhhhhccCCCCCCCceEEEEc-----CCCceeeccC
Q 008267 56 IRRDSSEVPRCGVCGDSSCPRLYACMACAAVSCHV----PPHSSHVAIHATKTSSACSHEIAVDV-----DRAELFCCAC 126 (572)
Q Consensus 56 ~~~~~~~~~~C~~C~~~~~~~~~~Cl~C~~~~c~~----~~~~~h~~~H~~~~~~~~~H~~~~~~-----~~~~~~C~~c 126 (572)
+........+|+.|+ ...+||+||+||++|||| ..+++||+.|| ++++||+||.+ ++.++|||.|
T Consensus 166 ~~~~ni~~~~Cs~CD--l~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsHY----~~t~Hplavkl~Sls~~~~diyCY~C 239 (749)
T COG5207 166 IEMGNIGGLKCSLCD--LKTNLWVCLSCGYVGCGRMQYGAEGNGHALSHY----EETQHPLAVKLPSLSKEDCDIYCYLC 239 (749)
T ss_pred ccccccCCceecccc--chhceEEEEecCcccccceeecCCCCcchhhhh----hccCCceEEEccccccccccEEEEec
Confidence 334445557899998 568999999999999996 35689999999 89999999999 5789999999
Q ss_pred CceeeCCchhhHHhhhceeccccCCChhhhhhhcccCCCCCCCChhhhhhcccCCCCCCCCCCCCCCCCCc-ccccccCC
Q 008267 127 RDQVYDRDFDAAVVLAHTTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGDLPRG-LRGLNNLG 205 (572)
Q Consensus 127 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~GL~NlG 205 (572)
|+++.-+.-. -...++..||+++......+++..++..- +...|.+..... ...+.....|+ ++||.|+|
T Consensus 240 D~e~R~~~n~--n~~s~~~~fGinIa~~~~~Eksl~~lq~e--qn~nw~F~~~~~-----~~~sk~~~~ps~~~GliNlG 310 (749)
T COG5207 240 DSEIRSRYNS--NENSVTIDFGINIADGKTEEKSLRKLQSE--QNANWEFLEKKR-----APESKGESVPSPYVGLINLG 310 (749)
T ss_pred CcccccCCcc--cccceeeeeccchhhccchHHHHHHHHHh--hhcCcchhcccc-----CchhhcccCCCCccceEecC
Confidence 9997543311 12457788999887666555543222110 001111111100 01122334444 99999999
Q ss_pred chhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCC----CccChHHHHHHHHHhcCC
Q 008267 206 NTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDR----MPYSPAKFLYSWWRHASN 281 (572)
Q Consensus 206 NTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~----~~i~p~~~l~~l~~~~~~ 281 (572)
|+||+|||+|.|+....+..-+....+. +.|.. ..|..||.|+|.+|+.+|..... .++.|..|...+|+.++.
T Consensus 311 NsCYl~SviqSlv~~~v~~~~~d~l~~~-~~~~~-~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~e 388 (749)
T COG5207 311 NSCYLSSVIQSLVGYAVSKEEFDLLQHF-EICYM-KNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPE 388 (749)
T ss_pred CeeeHHHHHHHHhccccchhhhhhhccc-eeeee-cCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHHcCCchh
Confidence 9999999999999988777655433222 22322 13477999999999999987653 358999999999999999
Q ss_pred CcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeeccCCCC
Q 008267 282 LASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQ 361 (572)
Q Consensus 282 f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~~~~ 361 (572)
|...+||||||||.+||+.|+........ ..|.++|.+++..++.|..|+.+++..++...+.+++....
T Consensus 389 Fg~~~QQDA~EFLlfLL~kirk~~~S~~~----------~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~ 458 (749)
T COG5207 389 FGKFAQQDAHEFLLFLLEKIRKGERSYLI----------PPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGND 458 (749)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhccchhcC----------CCcchhhhhhhcceecccccccccccccceEEEEeecccCc
Confidence 99999999999999999999985432222 24789999999999999999999999999999998887644
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEEEE
Q 008267 362 GSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHI 441 (572)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~l 441 (572)
.+.++.++++.|+.++.++ |.|++|+.+..+++..-|++||++||++.
T Consensus 459 ----------------------------E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~ 506 (749)
T COG5207 459 ----------------------------EPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQV 506 (749)
T ss_pred ----------------------------chhhHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEec
Confidence 4679999999999999998 99999999999999999999999999999
Q ss_pred EEeEecCCCccccccceeeecCC--CCCCccccchhhhcc------------------------------------ccCC
Q 008267 442 KRFEHSSVRKMSRKVDRYLQFPL--SLDMAPYLSSSILRS------------------------------------RFGN 483 (572)
Q Consensus 442 kRf~~~~~~~~~~Ki~~~V~fp~--~Ldl~~~~~~~~~~~------------------------------------~~~~ 483 (572)
.||.... +...|+..++.+.. .++++.|++....+. ..++
T Consensus 507 ~R~~lqn--y~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgN 584 (749)
T COG5207 507 GRYSLQN--YKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGN 584 (749)
T ss_pred ceeeccc--eeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHHhhccC
Confidence 9999875 78899998888865 688888887521000 0000
Q ss_pred C---------------------------c---------------------------------------------------
Q 008267 484 R---------------------------F--------------------------------------------------- 485 (572)
Q Consensus 484 ~---------------------------~--------------------------------------------------- 485 (572)
. +
T Consensus 585 qDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF 664 (749)
T COG5207 585 QDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTF 664 (749)
T ss_pred cchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCCCCCC
Confidence 0 0
Q ss_pred --cCCCCCCCCC----CCCCCccEEEEEEEeeeCC-CCCCcEEEEEEeC----CcEEEEcCcceeeeCcccccCCceeEE
Q 008267 486 --FPFDGDESNT----LNEPSSEFELFAVVTHTGK-LDAGHYVTYLRLS----NKWYKCDDAWITEVNENTVRAAQGYMM 554 (572)
Q Consensus 486 --~~~~~~~~~~----~~~~~~~Y~L~avV~H~G~-~~~GHY~ayvr~~----~~W~~~dD~~V~~v~~~~v~~~~aYlL 554 (572)
.+..+.+.+. --.....|.|.|||+|.|+ +++|||++|||.. -+|..+||+++..++.-+++..++||+
T Consensus 665 ~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nGYiy 744 (749)
T COG5207 665 PEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIY 744 (749)
T ss_pred CCCCCCchhhhhcccccccccCcccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHhhCCeEE
Confidence 0000000000 0012345999999999999 9999999999964 379999999999999989999999999
Q ss_pred EEEE
Q 008267 555 FYVQ 558 (572)
Q Consensus 555 fY~r 558 (572)
||+|
T Consensus 745 lf~R 748 (749)
T COG5207 745 LFKR 748 (749)
T ss_pred EEec
Confidence 9987
No 5
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-66 Score=532.69 Aligned_cols=502 Identities=23% Similarity=0.396 Sum_probs=343.3
Q ss_pred CCccCccccCCCCCCC--cCCCCCcchHHHHhhcCCCCchheeeeeeecCCCCccccccCCCCCCcccCCCCC----C--
Q 008267 2 SSKINHHHQNDKTNGQ--IFPQPCPHLADFHARNGTKPFRAIQDCLHIKPPGGRAAIRRDSSEVPRCGVCGDS----S-- 73 (572)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~~~~~C~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~----~-- 73 (572)
..|+.++...+++..+ ..+.+|.||...+ .+..+++.+.... +..|.+|... .
T Consensus 22 ~~~~~kge~~p~d~~t~t~~~~~C~Hi~Kav------~l~~lk~~iks~~-------------~~~C~eC~e~~~~k~g~ 82 (877)
T KOG1873|consen 22 KVKRQKGETVPGDVKTPTETPVECQHIKKAV------DLSHLKRAIKSLL-------------WIKCSECNEEVKVKDGG 82 (877)
T ss_pred cchhhcCCCCCccccCCCCCccccchHHhhh------cHHHHHHHHHHHH-------------HHHHHHhhhcceeccCC
Confidence 4577777777773333 3355599999987 5555555554322 2568888521 1
Q ss_pred -------CCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCceeeccCCce-ee-CCc--hhhHH---
Q 008267 74 -------CPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQ-VY-DRD--FDAAV--- 139 (572)
Q Consensus 74 -------~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~~~C~~c~~~-v~-~~~--~~~~~--- 139 (572)
...+|+||.||+.|||+.....||+.||+.+ +.+.|+++|++.++.+|||.||.. |. +.. +-+.+
T Consensus 83 s~~~~~~~~~iWLCLkCG~q~CG~~~~~~halkH~~~~-r~~~Hclvin~~n~~~WCy~Cd~kl~~~~~kn~l~e~vd~l 161 (877)
T KOG1873|consen 83 SSDQFEFDNAIWLCLKCGYQGCGRNSESQHALKHFLTP-RSEPHCLVINLINWLIWCYSCDAKLVPFDKKNLLGEKVDLL 161 (877)
T ss_pred CccccccccceeeecccCCeeeCCCcccchhhhhhccc-CCCCeeEEEEeeeeeeEEEeccchhccccchhHHHHHHHHH
Confidence 2359999999999999768899999999754 578999999999999999999984 32 221 11111
Q ss_pred -hhhceeccccCCChhhhhhhcccCCCCCCCChhhhhhcccCCCCCCCCCCCCCCCCCcccccccCCchhhHHHHHHHHh
Q 008267 140 -VLAHTTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGDLPRGLRGLNNLGNTCFMNSVLQALF 218 (572)
Q Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCY~NSvLQ~L~ 218 (572)
..+....... .... ... ...++.+..... ...+ -.......-++||.|||||||+|||||.|.
T Consensus 162 ~k~a~~~~~~~--------spn~--~~~---s~~~ek~e~~sk-i~~g--gie~~~~~~VrGL~NLGNTCFFNavMQnL~ 225 (877)
T KOG1873|consen 162 IKVASKTSLTR--------SPNT--LKI---SSEEEKLEKGSK-IKKG--GIEKRRGYIVRGLTNLGNTCFFNAVMQNLA 225 (877)
T ss_pred HHHHhcccccc--------CCCc--ccc---hhhHHhhhhccc-cccc--CccccccccccccccccchhhHHHHHHHHh
Confidence 0111100000 0000 000 011111111110 0000 022445666899999999999999999999
Q ss_pred CChhHHHHHhcCCCcccccccCC-------------CCcccHHHHHHHHHHHHHcCCCCccChHHHHHHHHHhcCCCccc
Q 008267 219 HTPPLRNYFLSDRHNRYYCQSKN-------------GVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHASNLASY 285 (572)
Q Consensus 219 ~~p~fr~~~l~~~~~~~~~~~~~-------------~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~~~f~~~ 285 (572)
++|.||+.|.............. .+...+..+|.. +..|..+....|+|..|+..+...+|+|.+|
T Consensus 226 qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~e~~ksv~~Pr~lF~~~C~k~pqF~g~ 304 (877)
T KOG1873|consen 226 QTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMSETTKSVITPRTLFGQFCSKAPQFRGY 304 (877)
T ss_pred hcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhhhccCCccCHHHHHHHHHHhCCccccc
Confidence 99999999986554432111110 123445556655 4455666778899999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHhhhccCCC-----C------------------CCC-CCcccccccccceEEeeEEEeCcCC
Q 008267 286 EQQDAHEFFISMLDGIHEKVEKDQHKP-----R------------------SQG-NGDCCIAHRVFSGILRSDVMCMACG 341 (572)
Q Consensus 286 ~QqDA~Efl~~lLd~L~~~~~~~~~~~-----~------------------~~~-~~~~~~i~~~F~g~l~s~i~C~~C~ 341 (572)
+||||||+|+.|||.|..|......+. . ... .....++..+|.|.+.+.+.|..|.
T Consensus 305 ~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~~~~vp~~~~~~~~s~~~~~~~~ 384 (877)
T KOG1873|consen 305 DQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDLSLPVPLSFNGPLTSQIECQACD 384 (877)
T ss_pred ccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccccccCCcccccccCCCcccchhhhccc
Confidence 999999999999999987532211110 0 000 0111345578999999999999998
Q ss_pred CeeeeeeCCeeeeeccCCCCCC----------------------------------------------------------
Q 008267 342 FTSTTFDPCVDFSLDLEPNQGS---------------------------------------------------------- 363 (572)
Q Consensus 342 ~~s~~~e~f~~lsL~i~~~~~~---------------------------------------------------------- 363 (572)
++...+.|.+.++||......
T Consensus 385 -vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~e~~~~~t~dn~~~~k~qS~~~~~~S 463 (877)
T KOG1873|consen 385 -VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSSELLDSLTDDNDQVFKGQSDVAGTNS 463 (877)
T ss_pred -eeccchhhcccccccccCccccccCCCcccceeccccccCCccccCcccCcccccccccccccCchhhccccccccCcc
Confidence 777788888888887653220
Q ss_pred ---------------------------------------Ccccc-----------------CCC-CC-------------
Q 008267 364 ---------------------------------------SMKTS-----------------STK-SN------------- 373 (572)
Q Consensus 364 ---------------------------------------~~~~~-----------------~~~-~~------------- 373 (572)
+..+. .+. ..
T Consensus 464 ~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~lde~n~~~~sss~~~~~~~~~~~s~v~~ 543 (877)
T KOG1873|consen 464 KEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSKADMSLDEANMDEFSSSLEKGIFRGRSTSEVSQ 543 (877)
T ss_pred ccccchhhhhhhhhccccccccccchhhhhhchhhccccccCcccccccccccccccccccccccCCcccCCccHHHhhh
Confidence 00000 000 00
Q ss_pred C----CCCC------------------------------------------------------------------CCCCC
Q 008267 374 H----SCNC------------------------------------------------------------------EADGM 383 (572)
Q Consensus 374 ~----~~~~------------------------------------------------------------------~~~~~ 383 (572)
. .+++ ..++.
T Consensus 544 ~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~vs~n~~~~g~~g~~~~Sssf~~g~~~g~ 623 (877)
T KOG1873|consen 544 ASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKIVSGNDKTVGDQGETENSSSFNEGDLNGH 623 (877)
T ss_pred hhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceeeeccccccccccceeeechhhhccCcccc
Confidence 0 0000 00000
Q ss_pred -----------------C-----------------------------CCCCCCCCcHHHHHHhcCCccccCCCCcccccc
Q 008267 384 -----------------N-----------------------------SSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQ 417 (572)
Q Consensus 384 -----------------~-----------------------------~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~ 417 (572)
. ....-++++++.||.+|+..|.|.|+|++.|++
T Consensus 624 ~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D~p~Svq~CL~nFT~~E~Ls~~N~~~CEn 703 (877)
T KOG1873|consen 624 ASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSDEPCSVQRCLKNFTKVEILSGDNKWACEN 703 (877)
T ss_pred ccchHHhhhcCcccCCCccccccCCCccceeccCCccccccccChhhccCCCCCccHHHHHHhhhhhhhcccccchhhhh
Confidence 0 000113689999999999999999999999999
Q ss_pred ccccc---------------------------eeEEEEEeecCCceEEEEEEEeEecCCCccccccceeeecCCCCCCcc
Q 008267 418 CQVRQ---------------------------ESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAP 470 (572)
Q Consensus 418 C~~~~---------------------------~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~ 470 (572)
|.+.- .+.|++.|..+|+||+||||||..+. .+...|.+.+|.|++.+||.+
T Consensus 704 Ctk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q~~-~~~~~k~~~h~~f~E~~dL~~ 782 (877)
T KOG1873|consen 704 CTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQDI-RGRLSKLNKHVDFKEFEDLLD 782 (877)
T ss_pred hhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhhhh-hchhhcccccchHHHHHHHHH
Confidence 97610 25788999999999999999999885 455899999999999999999
Q ss_pred ccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEe----------------------CC
Q 008267 471 YLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRL----------------------SN 528 (572)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~----------------------~~ 528 (572)
|+....... .......|+|+|||.|.|++..|||++|+|. .+
T Consensus 783 ~~~~rc~~l----------------~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~~~~~sd~~~~~~ 846 (877)
T KOG1873|consen 783 YMDFRCSHL----------------DEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNSKDFESDAGIPSG 846 (877)
T ss_pred Hhhhhcccc----------------CCcchhhhhhccceeccccccCCcchhhhhccchhhccCccccccchhccCCCCc
Confidence 987543111 1124568999999999999999999999973 37
Q ss_pred cEEEEcCcceeeeCcccccCCceeEEEEEE
Q 008267 529 KWYKCDDAWITEVNENTVRAAQGYMMFYVQ 558 (572)
Q Consensus 529 ~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r 558 (572)
+||.+.|+.|.+|++++|+.++||||||+|
T Consensus 847 ~Wy~iSDs~VrevS~d~vLkseAYlLFYER 876 (877)
T KOG1873|consen 847 RWYYISDSIVREVSLDEVLKSEAYLLFYER 876 (877)
T ss_pred ceEEecchheecccHHHHhhhhhhhhheec
Confidence 999999999999999999999999999998
No 6
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5e-63 Score=497.52 Aligned_cols=281 Identities=33% Similarity=0.591 Sum_probs=247.9
Q ss_pred ccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCC--CccChHHHHHHHHH
Q 008267 200 GLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDR--MPYSPAKFLYSWWR 277 (572)
Q Consensus 200 GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~--~~i~p~~~l~~l~~ 277 (572)
||.|+|||||||||||+|+| .+++++|+.||..|+.... ..++|..|+.+++.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~ 55 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKR 55 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHh
Confidence 89999999999999999987 2588899999999998653 35899999999999
Q ss_pred hcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCC--------CCCCcccccccccceEEeeEEEeCcCCCeeeeeeC
Q 008267 278 HASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRS--------QGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDP 349 (572)
Q Consensus 278 ~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~--------~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~ 349 (572)
..+.|.+++||||||||.+|||.|++++......... ......+++.++|+|++.++++|..|+.++.+.|+
T Consensus 56 ~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~ 135 (300)
T cd02663 56 ENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDET 135 (300)
T ss_pred hcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccce
Confidence 9999999999999999999999999988754322111 01122367899999999999999999999999999
Q ss_pred CeeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEE
Q 008267 350 CVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMS 429 (572)
Q Consensus 350 f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~ 429 (572)
|++|+|+||. ..+|++||+.|+++|.+.++++|.|++|+.++.++|+..
T Consensus 136 f~~Lsl~i~~-------------------------------~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~ 184 (300)
T cd02663 136 FLDLSIDVEQ-------------------------------NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMK 184 (300)
T ss_pred eEEeccCCCC-------------------------------cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEE
Confidence 9999999995 358999999999999999999999999999999999999
Q ss_pred eecCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEE
Q 008267 430 IRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVV 509 (572)
Q Consensus 430 i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV 509 (572)
|.++|+||+|||+||.++...+...|+..+|.||+.|+|.++... .......|+|+|||
T Consensus 185 i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~---------------------~~~~~~~Y~L~~vi 243 (300)
T cd02663 185 IKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDD---------------------AENPDRLYELVAVV 243 (300)
T ss_pred eccCCceeEEEEEeEEeecccCCceecCceEecCcEEeccccccc---------------------cCCCCeEEEEEEEE
Confidence 999999999999999999644567899999999999999876422 12234689999999
Q ss_pred eeeCC-CCCCcEEEEEEeCCcEEEEcCcceeeeCccccc--------CCceeEEEEE
Q 008267 510 THTGK-LDAGHYVTYLRLSNKWYKCDDAWITEVNENTVR--------AAQGYMMFYV 557 (572)
Q Consensus 510 ~H~G~-~~~GHY~ayvr~~~~W~~~dD~~V~~v~~~~v~--------~~~aYlLfY~ 557 (572)
+|.|+ +++|||++|+|.+++||+|||+.|+++++++|. ..+||||||+
T Consensus 244 ~H~G~~~~~GHY~a~~k~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 244 VHIGGGPNHGHYVSIVKSHGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred EEecCCCCCCceEEEEECCCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 99998 999999999999999999999999999999886 5799999995
No 7
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-62 Score=500.71 Aligned_cols=326 Identities=50% Similarity=0.887 Sum_probs=270.3
Q ss_pred cccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHH-cCCCCccChHHHHHHHHH
Q 008267 199 RGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIF-CGDRMPYSPAKFLYSWWR 277 (572)
Q Consensus 199 ~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~~~~~~i~p~~~l~~l~~ 277 (572)
|||.|+|||||||||||+|+|+|+||++++...+.. .+. ...+..|+.|+|.++|..++ .+...++.|..|+..+|.
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~-~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~ 78 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSC-TCL-SCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWK 78 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCcccc-ccc-cCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Confidence 699999999999999999999999999999865432 111 12336799999999999994 445667899999999999
Q ss_pred hcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeecc
Q 008267 278 HASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDL 357 (572)
Q Consensus 278 ~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i 357 (572)
..+.|.++.||||||||.+|||.|++++........ ......++|.++|+|++.+.++|..|++++.+.++|++|+|++
T Consensus 79 ~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~-~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i 157 (328)
T cd02660 79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEAN-DESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDI 157 (328)
T ss_pred hchhhcccccccHHHHHHHHHHHHHHHhhccccccc-ccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeec
Confidence 999999999999999999999999998765432211 1111226899999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceE
Q 008267 358 EPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVS 437 (572)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL 437 (572)
|........ ..........+|++||+.|+.+|.+.+.+ |.|++|+.++.+.++..|.++|++|
T Consensus 158 ~~~~~~~~~----------------~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~L 220 (328)
T cd02660 158 PNKSTPSWA----------------LGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVL 220 (328)
T ss_pred ccccccccc----------------ccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCcee
Confidence 875311000 00111124679999999999999998776 9999999999999999999999999
Q ss_pred EEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCCCC
Q 008267 438 CFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDA 517 (572)
Q Consensus 438 ~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~ 517 (572)
+|||+||.++.. +...|+...|.||..|||.+|+..+... ............|+|+|||+|.|+.++
T Consensus 221 ii~lkRf~~~~~-~~~~K~~~~v~fp~~Ldl~~~~~~~~~~------------~~~~~~~~~~~~Y~L~avi~H~G~~~~ 287 (328)
T cd02660 221 CFQLKRFEHSLN-KTSRKIDTYVQFPLELNMTPYTSSSIGD------------TQDSNSLDPDYTYDLFAVVVHKGTLDT 287 (328)
T ss_pred EEEEEeEEecCC-CCCcCCCcEEeCCCEechhhhccccccc------------ccccccCCCCceEEEEEEEEeeccCCC
Confidence 999999999863 6678999999999999999998753200 001112345679999999999999889
Q ss_pred CcEEEEEEeC-CcEEEEcCcceeeeCcccccCCceeEEEEE
Q 008267 518 GHYVTYLRLS-NKWYKCDDAWITEVNENTVRAAQGYMMFYV 557 (572)
Q Consensus 518 GHY~ayvr~~-~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~ 557 (572)
|||++|+|.. ++||+|||+.|+++++++|+..+||||||.
T Consensus 288 GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 288 GHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred CcEEEEEECCCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 9999999987 999999999999999999999999999994
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-61 Score=486.64 Aligned_cols=301 Identities=26% Similarity=0.442 Sum_probs=244.2
Q ss_pred CCCCCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHH
Q 008267 192 GDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKF 271 (572)
Q Consensus 192 ~~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~ 271 (572)
+...+|++||.|+|||||||||||+|+++|+||+.++...... . .......+..++..++......+.|..|
T Consensus 18 ~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~----~----~~~~~q~~~~~l~~~~~~~~~~~~P~~~ 89 (332)
T cd02671 18 RENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI----S----SVEQLQSSFLLNPEKYNDELANQAPRRL 89 (332)
T ss_pred cccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc----C----cHHHHHHHHHHHHHHHhhcccccCHHHH
Confidence 5567899999999999999999999999999999886532110 0 0011111222334455544445679999
Q ss_pred HHHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCe
Q 008267 272 LYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCV 351 (572)
Q Consensus 272 l~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~ 351 (572)
+..++...+.|.++.||||||||.+|||.|+. ++.++|+|++.++++|..|++++.+.|+|+
T Consensus 90 ~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~------------------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~ 151 (332)
T cd02671 90 LNALREVNPMYEGYLQHDAQEVLQCILGNIQE------------------LVEKDFQGQLVLRTRCLECETFTERREDFQ 151 (332)
T ss_pred HHHHHHhccccCCccccCHHHHHHHHHHHHHH------------------HHHhhhceEEEEEEEeCCCCCeeceecccE
Confidence 99999999999999999999999999999985 467899999999999999999999999999
Q ss_pred eeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEee
Q 008267 352 DFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIR 431 (572)
Q Consensus 352 ~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~ 431 (572)
+|+|+|+......... + ......+..+..+|++||+.|+++|.+.|+++|.|++|+.++.++|+..|.
T Consensus 152 ~lsL~i~~~~~~~~~~-------~-----~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~ 219 (332)
T cd02671 152 DISVPVQESELSKSEE-------S-----SEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFD 219 (332)
T ss_pred EEEEEeCCCccccccc-------c-----cccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEe
Confidence 9999999753211100 0 000011122457999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEEeEecCCC----ccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEE
Q 008267 432 KLPLVSCFHIKRFEHSSVR----KMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFA 507 (572)
Q Consensus 432 ~lP~vL~i~lkRf~~~~~~----~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~a 507 (572)
++|+||+|||+||.++... +...|+++.|.||..|||.+|... .....|+|+|
T Consensus 220 ~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~-----------------------~~~~~Y~L~~ 276 (332)
T cd02671 220 KLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTK-----------------------PKNDVYRLFA 276 (332)
T ss_pred cCCCEEEEEeeeeccccccccccCCceecCccccCccccccccccCC-----------------------CCCCeEEEEE
Confidence 9999999999999986421 346899999999999999876532 2457899999
Q ss_pred EEeeeCC-CCCCcEEEEEEeCCcEEEEcCcceeeeCcccccC---------CceeEEEEE
Q 008267 508 VVTHTGK-LDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRA---------AQGYMMFYV 557 (572)
Q Consensus 508 vV~H~G~-~~~GHY~ayvr~~~~W~~~dD~~V~~v~~~~v~~---------~~aYlLfY~ 557 (572)
||+|.|. +++|||+||+| ||+|||+.|+.++++++.. .+||||||+
T Consensus 277 VI~H~G~~~~~GHY~a~vr----W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 277 VVMHSGATISSGHYTAYVR----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred EEEEcCCCCCCCeEEEEEE----EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 9999997 89999999999 9999999999999877652 599999994
No 9
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-61 Score=491.65 Aligned_cols=295 Identities=27% Similarity=0.490 Sum_probs=254.7
Q ss_pred ccccCCchhhHHHHHHHHhCChhHHHHHhcCCCccccccc----C-CCCcccHHHHHHHHHHHHHcCCCCccChHHHHHH
Q 008267 200 GLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQS----K-NGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYS 274 (572)
Q Consensus 200 GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~----~-~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~ 274 (572)
||.|+||||||||+||+|+++|+||++++........... . .....+++++|+.||..|+.+....++|..|+..
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 8999999999999999999999999999875432210000 0 0113579999999999999998888999999988
Q ss_pred HHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeee
Q 008267 275 WWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFS 354 (572)
Q Consensus 275 l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~ls 354 (572)
+ .|..++||||+|||.+|||.|++++...... ...+++.++|.|++.+.++|..|+.++.+.|+|++|+
T Consensus 81 l-----~~~~~~QqDa~EFl~~lLd~L~~~l~~~~~~------~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~ 149 (324)
T cd02668 81 L-----GLDTGQQQDAQEFSKLFLSLLEAKLSKSKNP------DLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELE 149 (324)
T ss_pred h-----CCCCccccCHHHHHHHHHHHHHHHHhhccCC------cccchhhhhcceEEEEEEEeCCCCCccccccccEEEE
Confidence 7 3677899999999999999999987643111 1125789999999999999999999999999999999
Q ss_pred eccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCC
Q 008267 355 LDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLP 434 (572)
Q Consensus 355 L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP 434 (572)
|+|+. ..+|++||+.|+.+|.++|++.|.|++|+.++.+.|+..|.++|
T Consensus 150 l~i~~-------------------------------~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP 198 (324)
T cd02668 150 LQLKG-------------------------------HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLP 198 (324)
T ss_pred EEecc-------------------------------cCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCC
Confidence 99984 35899999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCC
Q 008267 435 LVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGK 514 (572)
Q Consensus 435 ~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~ 514 (572)
+||+|||+||.++...+...|+++.|.||..|||++|+... ......|+|+|||+|.|.
T Consensus 199 ~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~---------------------~~~~~~Y~L~~vI~H~G~ 257 (324)
T cd02668 199 PTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAES---------------------DEGSYVYELSGVLIHQGV 257 (324)
T ss_pred CeEEEEEEcceeecccCcceeCCcEEECCCeEechhhcccc---------------------cCCCcEEEEEEEEEEcCC
Confidence 99999999999997667789999999999999999998542 234578999999999998
Q ss_pred -CCCCcEEEEEEe--CCcEEEEcCcceeeeCcccc---------------------cCCceeEEEEE
Q 008267 515 -LDAGHYVTYLRL--SNKWYKCDDAWITEVNENTV---------------------RAAQGYMMFYV 557 (572)
Q Consensus 515 -~~~GHY~ayvr~--~~~W~~~dD~~V~~v~~~~v---------------------~~~~aYlLfY~ 557 (572)
+++|||++|+|. +++||+|||+.|++++.+.| .+.+||||||+
T Consensus 258 ~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 258 SAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred CCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 899999999996 47999999999999987655 24589999995
No 10
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.9e-61 Score=486.95 Aligned_cols=296 Identities=28% Similarity=0.486 Sum_probs=248.5
Q ss_pred ccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHH-HHHHHHHh
Q 008267 200 GLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAK-FLYSWWRH 278 (572)
Q Consensus 200 GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~-~l~~l~~~ 278 (572)
||.|+||||||||+||+|+++|+||++++....+.. ....++.++|+.+|..|......++.|.. |+..++
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~-- 72 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR-- 72 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--
Confidence 899999999999999999999999999998654311 12346888999999988777666777776 776654
Q ss_pred cCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeeccC
Q 008267 279 ASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLE 358 (572)
Q Consensus 279 ~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~ 358 (572)
.+.|..++||||||||.+||+.|+. +|.++|.|++.+.++|..|+.++.+.|+|.+|+|+||
T Consensus 73 ~~~f~~~~QqDa~EFl~~lLd~l~~------------------~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~ 134 (327)
T cd02664 73 PPWFTPGSQQDCSEYLRYLLDRLHT------------------LIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP 134 (327)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHHH------------------HHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC
Confidence 4679999999999999999999992 4788999999999999999999999999999999987
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEE
Q 008267 359 PNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSC 438 (572)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~ 438 (572)
+|++||+.|+.+|.++|++.|+|++|++++.+.|+..|.++|+||+
T Consensus 135 ----------------------------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLi 180 (327)
T cd02664 135 ----------------------------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLI 180 (327)
T ss_pred ----------------------------------CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhE
Confidence 5899999999999999999999999999999999999999999999
Q ss_pred EEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCC-CCC
Q 008267 439 FHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGK-LDA 517 (572)
Q Consensus 439 i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~ 517 (572)
|||+||.++...+...|+.++|.||..|||.+|+............ .... .+..........|+|+|||+|.|. +++
T Consensus 181 i~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~ 258 (327)
T cd02664 181 LTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKK-EEES-GDDGELVTRQVHYRLYAVVVHSGYSSES 258 (327)
T ss_pred EEeeeeEEccccCcceecCceEecCCEEecCccccccccccccccc-cccc-cccccccCCCceEEEEEEEEEccCCCCC
Confidence 9999999997667789999999999999999887432111000000 0000 001112234678999999999997 899
Q ss_pred CcEEEEEEeC----------------------CcEEEEcCcceeeeCcccccC-------CceeEEEEE
Q 008267 518 GHYVTYLRLS----------------------NKWYKCDDAWITEVNENTVRA-------AQGYMMFYV 557 (572)
Q Consensus 518 GHY~ayvr~~----------------------~~W~~~dD~~V~~v~~~~v~~-------~~aYlLfY~ 557 (572)
|||+||+|.. +.||+|||+.|+++++++|.. .+||||||+
T Consensus 259 GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 259 GHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred cceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 9999999963 689999999999999999986 799999995
No 11
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-60 Score=475.14 Aligned_cols=256 Identities=37% Similarity=0.698 Sum_probs=230.6
Q ss_pred ccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHHHHHhc
Q 008267 200 GLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHA 279 (572)
Q Consensus 200 GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~ 279 (572)
||.|+|||||||||||+|+|+|+||++++. +|..|+..++...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------~P~~~~~~l~~~~ 43 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------TPKELFSQVCRKA 43 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------------------------------------CHHHHHHHHHHhh
Confidence 899999999999999999999999999865 6778888888888
Q ss_pred CCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeeccCC
Q 008267 280 SNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEP 359 (572)
Q Consensus 280 ~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~~ 359 (572)
+.|.+++||||+|||.+|||.|+. ++.++|.|++.++++|..|+.++.+.|+|++|+|+++.
T Consensus 44 ~~f~~~~QqDA~Efl~~lld~l~~------------------~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~ 105 (279)
T cd02667 44 PQFKGYQQQDSHELLRYLLDGLRT------------------FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSD 105 (279)
T ss_pred HhhcCCchhhHHHHHHHHHHHHHH------------------hhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCc
Confidence 999999999999999999999983 47889999999999999999999999999999999874
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEE
Q 008267 360 NQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCF 439 (572)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i 439 (572)
.. ....+|++||+.|+.+|.++++++|.|++|++ ++|+..|.++|++|+|
T Consensus 106 ~~---------------------------~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii 155 (279)
T cd02667 106 EI---------------------------KSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVI 155 (279)
T ss_pred cc---------------------------CCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEE
Confidence 32 13579999999999999999999999999988 8899999999999999
Q ss_pred EEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCCCCCc
Q 008267 440 HIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGH 519 (572)
Q Consensus 440 ~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GH 519 (572)
||+||.++.. +...|+++.|.||..|||++|+..... .........|+|+|||+|.|+.++||
T Consensus 156 ~LkRF~~~~~-~~~~Ki~~~v~fP~~Ldl~~~~~~~~~----------------~~~~~~~~~Y~L~~vi~H~G~~~~GH 218 (279)
T cd02667 156 HLKRFQQPRS-ANLRKVSRHVSFPEILDLAPFCDPKCN----------------SSEDKSSVLYRLYGVVEHSGTMRSGH 218 (279)
T ss_pred EEeccccCcc-cCceecCceEeCCCccchhhccCcccc----------------ccccCCCceEEEEEEEEEeCCCCCCE
Confidence 9999999863 467899999999999999999865210 00123457899999999999999999
Q ss_pred EEEEEEe-----------------------CCcEEEEcCcceeeeCcccccCCceeEEEEE
Q 008267 520 YVTYLRL-----------------------SNKWYKCDDAWITEVNENTVRAAQGYMMFYV 557 (572)
Q Consensus 520 Y~ayvr~-----------------------~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~ 557 (572)
|+||+|. +++||+|||+.|++|+.++|...+||||||+
T Consensus 219 Y~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 219 YVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred eEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 9999996 5799999999999999999999999999996
No 12
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-61 Score=496.40 Aligned_cols=453 Identities=41% Similarity=0.736 Sum_probs=354.7
Q ss_pred cccccCCCCCCcccCCCCCCCCCcEE-ecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCceeeccCCceeeC
Q 008267 54 AAIRRDSSEVPRCGVCGDSSCPRLYA-CMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYD 132 (572)
Q Consensus 54 ~~~~~~~~~~~~C~~C~~~~~~~~~~-Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~~~C~~c~~~v~~ 132 (572)
..++......+.|..|. .....+.+ |+.|+.++|.. +.|...|. ...+|-+.+++.++..||+.|+++||+
T Consensus 34 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~g~~~~~~c~~~i~~ 105 (492)
T KOG1867|consen 34 KDARILPLKTINCGTCG-VLQIRLAVPCLICDSLGCLS---NSHKLEHS----GNKKHNNTIDVNNGLLYCFACPDFIYD 105 (492)
T ss_pred cchhhcccccceeEEec-hhhhhhcccceechhccccc---cccccccc----ccccccccceeehhhheeccCCcEeec
Confidence 34555566677899995 34556667 89999999983 57888898 788999999999999999999999999
Q ss_pred CchhhHHhhhceeccccCCChhhhhhhcccCCCCCCCChhhhhhcccCCCCCCCCCCCCCCCCCcccccccCCchhhHHH
Q 008267 133 RDFDAAVVLAHTTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGDLPRGLRGLNNLGNTCFMNS 212 (572)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCY~NS 212 (572)
.++..+....+.... ... ..... .....|.+...+..+...... .........-|++||.|+|||||||+
T Consensus 106 ~~~~~~~~~~~~~~~--~~~--~~~~~--~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~l~g~~n~g~tcfmn~ 175 (492)
T KOG1867|consen 106 AELLKLADIKKYKEQ--PFH--QLDST--LLTHLAEATVCQQTLLKENPK----DRLVLSTTALGLRGLRNLGSTCFMNV 175 (492)
T ss_pred cchhhHHHHHhhhcc--chh--hccch--hhhhhhhhhccchhcccCCcc----cccccceeeecccccccccHHHHHHH
Confidence 887655543222100 000 00000 000001111111111111111 01123456778999999999999999
Q ss_pred HHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCC-CCccChHHHHHHHHHhcCCCcccccCchH
Q 008267 213 VLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGD-RMPYSPAKFLYSWWRHASNLASYEQQDAH 291 (572)
Q Consensus 213 vLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-~~~i~p~~~l~~l~~~~~~f~~~~QqDA~ 291 (572)
|||+|.+.+..+...+...+. ++.......|+.|++.++|+.+|++. +.+++|..++..+|+..+.+.+++|||||
T Consensus 176 ilqsl~~~~~~~~~~l~~~h~---~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~k~~~~~~g~~Qqda~ 252 (492)
T KOG1867|consen 176 ILQSLLHDPLSRSSFLSGIHS---KEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVWKHSPNLAGYEQQDAH 252 (492)
T ss_pred HHHHhhccchhhccchhhhcc---cCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHHHhCcccccccccchH
Confidence 999999999999998887776 34433446799999999999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-CCCCCc-ccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeeccCCCCCCCccccC
Q 008267 292 EFFISMLDGIHEKVEKDQHKPR-SQGNGD-CCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSS 369 (572)
Q Consensus 292 Efl~~lLd~L~~~~~~~~~~~~-~~~~~~-~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~~~~~~~~~~~~ 369 (572)
||+..+++.++.+......... ...+.. .++++.+|.|.+.+.++|..|+..+.+.+||++|+|+||..-....
T Consensus 253 eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~~~---- 328 (492)
T KOG1867|consen 253 EFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDISLDIPDQFTSSS---- 328 (492)
T ss_pred HHHHHhcccccccccccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccceeeecchhccCcc----
Confidence 9999999999997611111111 111112 3899999999999999999999999999999999999996532110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEEEEEEeEecCC
Q 008267 370 TKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSV 449 (572)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~ 449 (572)
......++.+||+.|...+.+..+.++.|..|+.++.++|++.|.++|.+|++|++||++...
T Consensus 329 -----------------~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~ 391 (492)
T KOG1867|consen 329 -----------------VRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSAT 391 (492)
T ss_pred -----------------cccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecccccccc
Confidence 000136899999999999999888899999999999999999999999999999999999863
Q ss_pred CccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEeCCc
Q 008267 450 RKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRLSNK 529 (572)
Q Consensus 450 ~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~~~~ 529 (572)
. ...|++..|.||..|+|.+|+..+... ..+.....|+|.|||+|+|++++|||+||.|..+.
T Consensus 392 ~-~~~ki~~~v~fp~~l~m~p~~~~~~~~----------------~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~~~~ 454 (492)
T KOG1867|consen 392 G-AREKIDSYVSFPVLLNMKPYCSSEKLK----------------SQDNPDHLYELRAVVVHHGTVGSGHYVAYRRQSGG 454 (492)
T ss_pred c-cccccCcccccchhhcCCccccccccc----------------cCCCCCceEEEEEEEEeccCCCCCceEEEEEeCCC
Confidence 3 333999999999999999999753211 11245789999999999999999999999999999
Q ss_pred EEEEcCcceeeeCcccccCCceeEEEEEEecccccc
Q 008267 530 WYKCDDAWITEVNENTVRAAQGYMMFYVQKMLYYKA 565 (572)
Q Consensus 530 W~~~dD~~V~~v~~~~v~~~~aYlLfY~r~~~~~~~ 565 (572)
||+|||+.|+.+++++|+..+||+|||.++...+++
T Consensus 455 ~~~~dDs~v~~~s~~eVl~~~aylLFY~~~~~~~~~ 490 (492)
T KOG1867|consen 455 WFKCDDSTVTKVSEEEVLSSQAYLLFYTQEQVEYEA 490 (492)
T ss_pred cEEEcCeEEEEeeHHHhhhchhhheehhHHhhhhhh
Confidence 999999999999999999999999999998877654
No 13
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.6e-59 Score=474.19 Aligned_cols=292 Identities=23% Similarity=0.436 Sum_probs=247.9
Q ss_pred ccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCC--------------CCc
Q 008267 200 GLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGD--------------RMP 265 (572)
Q Consensus 200 GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--------------~~~ 265 (572)
||.|+|||||||||||+|+++|+||++|+...... .+. ...+..++.++|.++|..|+++. ..+
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~-~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKF-PSD-VVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG 78 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhcccc-CCC-cCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence 89999999999999999999999999998732221 111 12346789999999999998753 236
Q ss_pred cChHHHHHHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeee
Q 008267 266 YSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTST 345 (572)
Q Consensus 266 i~p~~~l~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~ 345 (572)
++|..|+..++...+.|.+++||||||||++||+.|++++..... ..+.++|.|.+.+.++|..|+.++.
T Consensus 79 i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~----------~~~~~~f~~~~~~~i~C~~C~~~s~ 148 (311)
T cd02658 79 IKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKNLG----------LNPNDLFKFMIEDRLECLSCKKVKY 148 (311)
T ss_pred cCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccccc----------CCchhheEEEeeEEEEcCCCCCEEE
Confidence 899999999999999999999999999999999999998753211 2367899999999999999999999
Q ss_pred eeeCCeeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeE
Q 008267 346 TFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESL 425 (572)
Q Consensus 346 ~~e~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~ 425 (572)
+.++|.+|+|++|....... ..........+|++||+.|+.+|.++ +.|++|+.++.+.
T Consensus 149 ~~e~~~~lsL~l~~~~~~~~-----------------~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~ 207 (311)
T cd02658 149 TSELSEILSLPVPKDEATEK-----------------EEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTAT 207 (311)
T ss_pred eecceeEEeeeccccccccc-----------------ccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEE
Confidence 99999999999996431100 00001113569999999999999997 7899999999999
Q ss_pred EEEEeecCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEE
Q 008267 426 KQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFEL 505 (572)
Q Consensus 426 k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L 505 (572)
|+.+|.++|+||+|||+||.++. .+...|+...|.||..| ....|+|
T Consensus 208 k~~~i~~lP~vLii~LkRF~~~~-~~~~~Ki~~~v~~p~~l--------------------------------~~~~Y~L 254 (311)
T cd02658 208 KTTGFKTFPDYLVINMKRFQLLE-NWVPKKLDVPIDVPEEL--------------------------------GPGKYEL 254 (311)
T ss_pred EEEEeecCCceEEEEeEEEEecC-CCceEeeccccccCCcC--------------------------------CCCcEEE
Confidence 99999999999999999999963 46788999999999776 1236999
Q ss_pred EEEEeeeCC-CCCCcEEEEEEeC----CcEEEEcCcceeeeCcccccCCceeEEEEE
Q 008267 506 FAVVTHTGK-LDAGHYVTYLRLS----NKWYKCDDAWITEVNENTVRAAQGYMMFYV 557 (572)
Q Consensus 506 ~avV~H~G~-~~~GHY~ayvr~~----~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~ 557 (572)
+|||+|.|. +++|||++|+|.. ++||+|||+.|++++..+|...+||||||+
T Consensus 255 ~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 255 IAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred EEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 999999998 9999999999987 899999999999999999999999999995
No 14
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-59 Score=473.71 Aligned_cols=288 Identities=27% Similarity=0.397 Sum_probs=249.7
Q ss_pred ccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHHHHHhc
Q 008267 200 GLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHA 279 (572)
Q Consensus 200 GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~ 279 (572)
||.|+|||||||||||+|+++|+||++++....... + ......++.++|++||..|+.+.. .++|..|+..++...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~-~--~~~~~~~~~~~l~~L~~~l~~~~~-~i~p~~~~~~l~~~~ 76 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR-G--ANQSSDNLTNALRDLFDTMDKKQE-PVPPIEFLQLLRMAF 76 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc-c--cccchhHHHHHHHHHHHHHHhCCC-cCCcHHHHHHHHHHC
Confidence 899999999999999999999999999987654321 0 112256899999999999987654 799999999999988
Q ss_pred CCCc------ccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCC-CeeeeeeCCee
Q 008267 280 SNLA------SYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACG-FTSTTFDPCVD 352 (572)
Q Consensus 280 ~~f~------~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~-~~s~~~e~f~~ 352 (572)
+.|. +++||||||||..|||.|++++.... ...++|.++|+|++.+.++|..|+ .++.+.|+|++
T Consensus 77 ~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~--------~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~ 148 (305)
T cd02657 77 PQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAG--------SKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYK 148 (305)
T ss_pred cCcccccCCCCccccCHHHHHHHHHHHHHHHhcccC--------CCCcHHHHhhceEEEEEEEcCCCCCCCccccccceE
Confidence 8884 55999999999999999999875411 112478999999999999999999 79999999999
Q ss_pred eeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeec
Q 008267 353 FSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRK 432 (572)
Q Consensus 353 lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~ 432 (572)
|+|+|+... ...+|++||+.++.++.. ..|+.|+....+.|+..|.+
T Consensus 149 Lsl~i~~~~----------------------------~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~ 195 (305)
T cd02657 149 LQCHISITT----------------------------EVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISR 195 (305)
T ss_pred EEeecCCCc----------------------------ccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEecc
Confidence 999998642 245899999999987654 47999999888999999999
Q ss_pred CCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeee
Q 008267 433 LPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHT 512 (572)
Q Consensus 433 lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~ 512 (572)
+|++|+|||+||.++.......|+.+.|.||..|||.+|+. ....|+|+|||+|.
T Consensus 196 lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~-------------------------~~~~Y~L~~vI~H~ 250 (305)
T cd02657 196 LPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT-------------------------PSGYYELVAVITHQ 250 (305)
T ss_pred CCcEEEEEEECCccccccCceeecCcEEECCceEecccccC-------------------------CCCcEEEEEEEEec
Confidence 99999999999999865566789999999999999999874 23579999999999
Q ss_pred CC-CCCCcEEEEEEeC--CcEEEEcCcceeeeCcccccC-------CceeEEEEE
Q 008267 513 GK-LDAGHYVTYLRLS--NKWYKCDDAWITEVNENTVRA-------AQGYMMFYV 557 (572)
Q Consensus 513 G~-~~~GHY~ayvr~~--~~W~~~dD~~V~~v~~~~v~~-------~~aYlLfY~ 557 (572)
|+ +++|||+||+|.. ++||+|||+.|+++++++|.. ..||||||+
T Consensus 251 G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 251 GRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred CCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 97 9999999999986 899999999999999999975 599999995
No 15
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-58 Score=473.56 Aligned_cols=309 Identities=29% Similarity=0.525 Sum_probs=256.8
Q ss_pred cccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHHHH
Q 008267 197 GLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWW 276 (572)
Q Consensus 197 g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~ 276 (572)
|++||.|+||||||||+||+|+++|+|+++++..... .......++.++|+.+|..|..+....+.|..+.....
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~-----~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT-----EDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRS 75 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc-----ccCcccccHHHHHHHHHHHHHhCCccccCcchhheecc
Confidence 7899999999999999999999999999999875211 01123567999999999999887655555554432222
Q ss_pred HhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeec
Q 008267 277 RHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLD 356 (572)
Q Consensus 277 ~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~ 356 (572)
.....|..++||||+|||.+||+.|++++..... .+++.++|.|.+...++|..|+..+...++|++|+|+
T Consensus 76 ~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~---------~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~ 146 (334)
T cd02659 76 FGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTGQ---------EGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVA 146 (334)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHhccCcc---------cchhhhhCceEEEeEEEecCCCceecccccceEEEEE
Confidence 2335678899999999999999999998754221 1368899999999999999999999999999999999
Q ss_pred cCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCce
Q 008267 357 LEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLV 436 (572)
Q Consensus 357 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~v 436 (572)
++. ..+|++||+.|+.+|.+++.+.|.|++|++++.+.++..|.++|++
T Consensus 147 i~~-------------------------------~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~v 195 (334)
T cd02659 147 VKG-------------------------------KKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPV 195 (334)
T ss_pred cCC-------------------------------CCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCE
Confidence 985 3489999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCCC
Q 008267 437 SCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLD 516 (572)
Q Consensus 437 L~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~ 516 (572)
|+|||+||.++...+...|++..|.||..|||.+|+........ ............|+|+|||+|.|+.+
T Consensus 196 Lii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~----------~~~~~~~~~~~~Y~L~~vI~H~G~~~ 265 (334)
T cd02659 196 LTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKE----------GDSEKKDSESYIYELHGVLVHSGDAH 265 (334)
T ss_pred EEEEeeeeEEccccCcceeCCceEeCCceecCcccccccccccc----------ccccccCCCCeeEEEEEEEEecCCCC
Confidence 99999999998766678999999999999999999865421100 00011234567899999999999999
Q ss_pred CCcEEEEEEeC--CcEEEEcCcceeeeCccccc----------------------CCceeEEEEEEec
Q 008267 517 AGHYVTYLRLS--NKWYKCDDAWITEVNENTVR----------------------AAQGYMMFYVQKM 560 (572)
Q Consensus 517 ~GHY~ayvr~~--~~W~~~dD~~V~~v~~~~v~----------------------~~~aYlLfY~r~~ 560 (572)
+|||++|+|.. ++||.|||+.|+++++++|+ ...||||||+|++
T Consensus 266 ~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 266 GGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred CCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 99999999974 89999999999999999885 3469999999975
No 16
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-58 Score=468.10 Aligned_cols=299 Identities=35% Similarity=0.709 Sum_probs=262.0
Q ss_pred cccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHHHHHh
Q 008267 199 RGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRH 278 (572)
Q Consensus 199 ~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~ 278 (572)
+||.|+|||||||||||+|+++|+||+++++..+....+ ....|+.++|..++..++......+.|..|...+...
T Consensus 2 ~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~ 77 (304)
T cd02661 2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC----NEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQI 77 (304)
T ss_pred CCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhcc----CCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHH
Confidence 799999999999999999999999999998755433111 2356899999999999988777889999999999998
Q ss_pred cCCCcccccCchHHHHHHHHHHHHHHhhhccCCCC--CCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeec
Q 008267 279 ASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPR--SQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLD 356 (572)
Q Consensus 279 ~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~--~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~ 356 (572)
.+.|..+.||||+|||.+|||.|++++........ .......+++.++|+|++.+.++|..|+.++.+.++|+.|+|+
T Consensus 78 ~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~ 157 (304)
T cd02661 78 SKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLD 157 (304)
T ss_pred HHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeee
Confidence 89999999999999999999999987654322111 0111223689999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCce
Q 008267 357 LEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLV 436 (572)
Q Consensus 357 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~v 436 (572)
+|.. .+|+++|+.|+.+|.+++++.|.|++|+++..+.++..|.++|++
T Consensus 158 i~~~-------------------------------~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~i 206 (304)
T cd02661 158 IKGA-------------------------------DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNV 206 (304)
T ss_pred cCCC-------------------------------CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcE
Confidence 9852 489999999999999999989999999999999999999999999
Q ss_pred EEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCC-C
Q 008267 437 SCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGK-L 515 (572)
Q Consensus 437 L~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~ 515 (572)
|+|||+||.++ ...|+.+.|.||..|||.+|+... ......|+|+|||+|.|. +
T Consensus 207 L~i~l~Rf~~~----~~~Ki~~~v~f~~~L~l~~~~~~~---------------------~~~~~~Y~L~~vi~H~G~~~ 261 (304)
T cd02661 207 LTIHLKRFSNF----RGGKINKQISFPETLDLSPYMSQP---------------------NDGPLKYKLYAVLVHSGFSP 261 (304)
T ss_pred EEEEEeccccC----CccccCCeEecCCeechhhccccC---------------------CCCCceeeEEEEEEECCCCC
Confidence 99999999987 367999999999999999998642 235578999999999999 6
Q ss_pred CCCcEEEEEEe-CCcEEEEcCcceeeeCcccccCCceeEEEEE
Q 008267 516 DAGHYVTYLRL-SNKWYKCDDAWITEVNENTVRAAQGYMMFYV 557 (572)
Q Consensus 516 ~~GHY~ayvr~-~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~ 557 (572)
++|||++|+|. +++||+|||+.|+++++++|+..+||||||.
T Consensus 262 ~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 262 HSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred CCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 99999999996 7899999999999999999999999999994
No 17
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-60 Score=476.96 Aligned_cols=342 Identities=33% Similarity=0.617 Sum_probs=284.1
Q ss_pred CcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccC-CCCcccHHHHHHHHHHHHHcCCCCccChHHHHHH
Q 008267 196 RGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSK-NGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYS 274 (572)
Q Consensus 196 ~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~ 274 (572)
.|..||.|+||||||||.||||.|++.+|+||++..+....+..+ .+..+.++.++..|++.++.++...++|..|...
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~t 342 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKT 342 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHH
Confidence 488999999999999999999999999999999987766555432 2455678888999999999999999999999999
Q ss_pred HHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCC-----------------------CCcccccccccceEE
Q 008267 275 WWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQG-----------------------NGDCCIAHRVFSGIL 331 (572)
Q Consensus 275 l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~-----------------------~~~~~~i~~~F~g~l 331 (572)
|+..+..|.||.|||++||+.++||.||+++++...++.... ..++++|.++|.|..
T Consensus 343 IG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmy 422 (823)
T COG5560 343 IGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMY 422 (823)
T ss_pred HhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Confidence 999999999999999999999999999999997666554321 135689999999999
Q ss_pred eeEEEeCcCCCeeeeeeCCeeeeeccCCCCCCC-----------------------------------------------
Q 008267 332 RSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSS----------------------------------------------- 364 (572)
Q Consensus 332 ~s~i~C~~C~~~s~~~e~f~~lsL~i~~~~~~~----------------------------------------------- 364 (572)
.+++.|..|+.++.++|||++|+||+|....-.
T Consensus 423 KSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~ 502 (823)
T COG5560 423 KSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVM 502 (823)
T ss_pred hceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeEE
Confidence 999999999999999999999999999754200
Q ss_pred --------------------------------------------c------ccc--CCCC--------------------
Q 008267 365 --------------------------------------------M------KTS--STKS-------------------- 372 (572)
Q Consensus 365 --------------------------------------------~------~~~--~~~~-------------------- 372 (572)
. +.. ...+
T Consensus 503 ~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE~ 582 (823)
T COG5560 503 CIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKEF 582 (823)
T ss_pred EEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHHH
Confidence 0 000 0000
Q ss_pred -------------------------CCCCCC--------------C---CCCC----------------C----CC----
Q 008267 373 -------------------------NHSCNC--------------E---ADGM----------------N----SS---- 386 (572)
Q Consensus 373 -------------------------~~~~~~--------------~---~~~~----------------~----~~---- 386 (572)
..+..+ + .++. + .+
T Consensus 583 ~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~l 662 (823)
T COG5560 583 EELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPL 662 (823)
T ss_pred HHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCcc
Confidence 000000 0 0000 0 00
Q ss_pred -------CCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEEEEEEeEecCCCcccccccee
Q 008267 387 -------QNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRY 459 (572)
Q Consensus 387 -------~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~ 459 (572)
.....+||+|||..|.++|.|.-.+.++|+.|+..+.|+|++.|+++|.||+||||||+... ....|+++-
T Consensus 663 w~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~r--sfrdKiddl 740 (823)
T COG5560 663 WTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVR--SFRDKIDDL 740 (823)
T ss_pred chhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcc--cchhhhhhh
Confidence 01256899999999999999999999999999999999999999999999999999999664 778999999
Q ss_pred eecCC-CCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEe--CCcEEEEcCc
Q 008267 460 LQFPL-SLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRL--SNKWYKCDDA 536 (572)
Q Consensus 460 V~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~--~~~W~~~dD~ 536 (572)
|.||. .|||+.+...- ++....|+|+||=.|+|.+.+|||+||+|+ +++||+|||+
T Consensus 741 VeyPiddldLs~~~~~~---------------------~~p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDs 799 (823)
T COG5560 741 VEYPIDDLDLSGVEYMV---------------------DDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDS 799 (823)
T ss_pred hccccccccccceEEee---------------------cCcceEEEeeeccccccccCCcceeeeeecccCCceEEecCc
Confidence 99998 79998876542 234478999999999999999999999997 8899999999
Q ss_pred ceeeeCcccccCCceeEEEEEEec
Q 008267 537 WITEVNENTVRAAQGYMMFYVQKM 560 (572)
Q Consensus 537 ~V~~v~~~~v~~~~aYlLfY~r~~ 560 (572)
+|++|.+++...+.||+|||+|+.
T Consensus 800 ritevdped~vtssaYvLFyrrk~ 823 (823)
T COG5560 800 RITEVDPEDSVTSSAYVLFYRRKS 823 (823)
T ss_pred cccccCccccccceeEEEEEEecC
Confidence 999999999999999999999973
No 18
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-56 Score=411.03 Aligned_cols=315 Identities=25% Similarity=0.366 Sum_probs=241.9
Q ss_pred ccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCC-C-CcccHHHHHHHHHHHHHcCCCCccChHHHHHHH
Q 008267 198 LRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKN-G-VRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSW 275 (572)
Q Consensus 198 ~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~-~-~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l 275 (572)
..||.|+|||||||++||||+.+..+...|+...+........+ + +.......+..+...+-......|+|..|+..+
T Consensus 71 p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~~i~ 150 (415)
T COG5533 71 PNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFIDIL 150 (415)
T ss_pred CccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHHHHH
Confidence 47999999999999999999999999986665443322222111 1 122344445555554444455669999999999
Q ss_pred HHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCC--------------------------CCCcccccccccce
Q 008267 276 WRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQ--------------------------GNGDCCIAHRVFSG 329 (572)
Q Consensus 276 ~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~--------------------------~~~~~~~i~~~F~g 329 (572)
...++.|.+..|||+|||+.++||.||++++....+.... ...+.+++.+.|.|
T Consensus 151 ~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~f~g 230 (415)
T COG5533 151 SGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTFFG 230 (415)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHHHhh
Confidence 9999999999999999999999999999987654432110 01233788899999
Q ss_pred EEeeEEEeCcCCCeeeeeeCCeeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCC
Q 008267 330 ILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGS 409 (572)
Q Consensus 330 ~l~s~i~C~~C~~~s~~~e~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~ 409 (572)
+..++++|..|+++|++..+|..|.+|++... ...|+||+++|+++|.|+|
T Consensus 231 q~~srlqC~~C~~TStT~a~fs~l~vp~~~v~-----------------------------~~~l~eC~~~f~~~e~L~g 281 (415)
T COG5533 231 QDKSRLQCEACNYTSTTIAMFSTLLVPPYEVV-----------------------------QLGLQECIDRFYEEEKLEG 281 (415)
T ss_pred hhhhhhhhhhcCCceeEEeccceeeeccchhe-----------------------------eecHHHHHHHhhhHHhhcC
Confidence 99999999999999999999999999998644 4569999999999999999
Q ss_pred CCccccccccccceeEEEEEeecCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCC
Q 008267 410 DQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFD 489 (572)
Q Consensus 410 ~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~ 489 (572)
++.|.|++|+.++.++|++.|.++|++|||||+||.... ....| ||+.++.+.....+.. ..
T Consensus 282 ~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V--~~~~k----------iD~p~gw~~~~~~e~~------v~ 343 (415)
T COG5533 282 KDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISV--MGRKK----------IDTPQGWKNTASVEVN------VT 343 (415)
T ss_pred cccccCchhcccccchheEEEEecCceEEEEeeeeeEEe--ecccc----------cCCCcchhccCCceec------cc
Confidence 999999999999999999999999999999999998542 23334 4444433221100000 00
Q ss_pred CCCCCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEeCCcEEEEcCcceeeeCccc-ccCCceeEEEEEEe
Q 008267 490 GDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENT-VRAAQGYMMFYVQK 559 (572)
Q Consensus 490 ~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~~~~W~~~dD~~V~~v~~~~-v~~~~aYlLfY~r~ 559 (572)
.+-.....-.+..|+|+|||||.|+.++|||+++|+.++.|+.|||+.|+.++-.. .....+|||||+|-
T Consensus 344 ~~f~~~~~~~P~~Y~L~gv~Ch~G~L~gGHY~s~v~~~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 344 LLFNNGIGYIPRKYSLLGVVCHNGTLNGGHYFSEVKRSGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred ccccCCCCCCccceeEEEEEeecceecCceeEEeeeecCceEEechhheeeccceecccCCcceEEEEEec
Confidence 00001122345789999999999999999999999999999999999999988743 33457899999984
No 19
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.4e-53 Score=409.97 Aligned_cols=216 Identities=38% Similarity=0.673 Sum_probs=194.5
Q ss_pred ccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHHHHHhc
Q 008267 200 GLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHA 279 (572)
Q Consensus 200 GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~ 279 (572)
||.|+||||||||+||+|+++|+||++++...
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999886411
Q ss_pred CCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeee-eeeCCeeeeeccC
Q 008267 280 SNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTST-TFDPCVDFSLDLE 358 (572)
Q Consensus 280 ~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~-~~e~f~~lsL~i~ 358 (572)
+||||||||..||+.|+. .+.++|.|++.+.++|..|+.++. +.|+|++|+|+||
T Consensus 33 ------~QqDa~EFl~~ll~~l~~------------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip 88 (240)
T cd02662 33 ------EQQDAHELFQVLLETLEQ------------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVP 88 (240)
T ss_pred ------hhcCHHHHHHHHHHHHHH------------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEeccc
Confidence 899999999999999993 267789999999999999999976 4899999999999
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEE
Q 008267 359 PNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSC 438 (572)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~ 438 (572)
.... ....+|++||+.|+.+|.+++ +.|++| +..|.++|+||+
T Consensus 89 ~~~~--------------------------~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLi 131 (240)
T cd02662 89 NQSS--------------------------GSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILC 131 (240)
T ss_pred ccCC--------------------------CCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEE
Confidence 7431 124699999999999999974 899999 568999999999
Q ss_pred EEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCCCCC
Q 008267 439 FHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAG 518 (572)
Q Consensus 439 i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~G 518 (572)
|||+||.++.. +...|+++.|.||+.| ....|+|+|||+|.|+.++|
T Consensus 132 i~LkRF~~~~~-~~~~K~~~~v~fp~~l--------------------------------~~~~Y~L~avi~H~G~~~~G 178 (240)
T cd02662 132 IHLSRSVFDGR-GTSTKNSCKVSFPERL--------------------------------PKVLYRLRAVVVHYGSHSSG 178 (240)
T ss_pred EEEEEEEEcCC-CceeeeccEEECCCcc--------------------------------CCceEEEEEEEEEeccCCCc
Confidence 99999999964 7889999999999987 12469999999999999999
Q ss_pred cEEEEEEeC----------------------CcEEEEcCcceeeeCcccc-cCCceeEEEEE
Q 008267 519 HYVTYLRLS----------------------NKWYKCDDAWITEVNENTV-RAAQGYMMFYV 557 (572)
Q Consensus 519 HY~ayvr~~----------------------~~W~~~dD~~V~~v~~~~v-~~~~aYlLfY~ 557 (572)
||++|+|.. +.||+|||+.|+++++++| ...+||||||+
T Consensus 179 HY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 179 HYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred eEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 999999976 8999999999999999999 88999999995
No 20
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-51 Score=428.45 Aligned_cols=324 Identities=31% Similarity=0.582 Sum_probs=267.2
Q ss_pred CCCCCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcC-CCCccChHH
Q 008267 192 GDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCG-DRMPYSPAK 270 (572)
Q Consensus 192 ~~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~~~i~p~~ 270 (572)
.....|.+||.|+|||||||++||||+.++.||+.++...+..............+..+...++..++.+ ....+.|..
T Consensus 295 ~~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~ 374 (653)
T KOG1868|consen 295 STDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRR 374 (653)
T ss_pred cccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHH
Confidence 3446788999999999999999999999999998888765554443111222345666777777777765 556789999
Q ss_pred HHHHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCC----CC----------C------------CCCcccccc
Q 008267 271 FLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKP----RS----------Q------------GNGDCCIAH 324 (572)
Q Consensus 271 ~l~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~----~~----------~------------~~~~~~~i~ 324 (572)
|+..+.+..+.|.++.|||||||+.++++.||+++....... .. . .......|.
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~ 454 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIG 454 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHH
Confidence 999999999999999999999999999999999988754310 00 0 011123478
Q ss_pred cccceEEeeEEEeCcCCCeeeeeeCCeeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCc
Q 008267 325 RVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRP 404 (572)
Q Consensus 325 ~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~ 404 (572)
++|.|++.+.++|..|+.+++++++|.+++|+||..... .+.++|++|+..|+..
T Consensus 455 ~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~-------------------------~~~~~L~~C~~~ft~~ 509 (653)
T KOG1868|consen 455 DLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFA-------------------------GGKVSLEDCLSLFTKE 509 (653)
T ss_pred HHHHHHHHhheehhhcCCcceeeecceeeEEeccccccc-------------------------ccccchHhhhccccch
Confidence 999999999999999999999999999999999975411 0246899999999999
Q ss_pred cccCCCCccccccccccceeE--EEEEeecCCceEEEEEEEeEecCCCccccccceeeecCC-CCCCccccchhhhcccc
Q 008267 405 ERLGSDQKFFCQQCQVRQESL--KQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPL-SLDMAPYLSSSILRSRF 481 (572)
Q Consensus 405 e~l~~~~~~~C~~C~~~~~~~--k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~ 481 (572)
|.+++++.|.|++|+.+.... |++.|.+||++|++||+||..+. ....|...-|+||. .+++.++...
T Consensus 510 ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~--~~~~k~~~~v~~~~~~~~~~~~~~~------- 580 (653)
T KOG1868|consen 510 EKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDG--NSFNKLSTGVDFPLREADLSPRFAE------- 580 (653)
T ss_pred hhcccccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCc--ccccccceeeccchHhhhhchhccc-------
Confidence 999999999999999999885 99999999999999999999885 45788999999998 5666654432
Q ss_pred CCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEe--CCcEEEEcCcceeeeCcccccCCceeEEEEEEe
Q 008267 482 GNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRL--SNKWYKCDDAWITEVNENTVRAAQGYMMFYVQK 559 (572)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~--~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r~ 559 (572)
.......|+|+|||+|.|++++|||+||++. .+.||.|||+.|+.++...|..+.||||||+|.
T Consensus 581 --------------~~~~~~~Y~L~aVv~H~Gtl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~ 646 (653)
T KOG1868|consen 581 --------------KGNNPKSYRLYAVVNHSGTLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERL 646 (653)
T ss_pred --------------cCCCccceeeEEEEeccCcccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecC
Confidence 1234456999999999999999999999976 578999999999999999999999999999997
Q ss_pred cccc
Q 008267 560 MLYY 563 (572)
Q Consensus 560 ~~~~ 563 (572)
....
T Consensus 647 ~~~~ 650 (653)
T KOG1868|consen 647 GIFE 650 (653)
T ss_pred Cccc
Confidence 6543
No 21
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.6e-49 Score=382.02 Aligned_cols=227 Identities=42% Similarity=0.805 Sum_probs=206.2
Q ss_pred ccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHHHHHhc
Q 008267 200 GLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHA 279 (572)
Q Consensus 200 GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~ 279 (572)
||.|.||||||||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999988
Q ss_pred CCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeeccCC
Q 008267 280 SNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEP 359 (572)
Q Consensus 280 ~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~~ 359 (572)
+||||+|||.+||+.|+. ++.++|.|++.++++|..|+..+...++|+.|+|++|.
T Consensus 21 ------~QqDa~Ef~~~ll~~l~~------------------~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~ 76 (230)
T cd02674 21 ------DQQDAQEFLLFLLDGLHS------------------IIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPS 76 (230)
T ss_pred ------hhhhHHHHHHHHHHHHhh------------------hHHheeCCEEeCcEEcCCCcCCcceecceeEEEEeccc
Confidence 799999999999999992 37889999999999999999999999999999999996
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEE
Q 008267 360 NQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCF 439 (572)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i 439 (572)
... ..+..+|+++|+.|+.+|.+++.+.+.|++|+..+.+.++..|.++|++|+|
T Consensus 77 ~~~-------------------------~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii 131 (230)
T cd02674 77 GSG-------------------------DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLII 131 (230)
T ss_pred ccC-------------------------CCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEe
Confidence 430 0135799999999999999999999999999999999999999999999999
Q ss_pred EEEEeEecCCCccccccceeeecCC-CCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCCCCC
Q 008267 440 HIKRFEHSSVRKMSRKVDRYLQFPL-SLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAG 518 (572)
Q Consensus 440 ~lkRf~~~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~G 518 (572)
||+||.++. +...|+...|.||. .|||.+|+... ......+|+|+|||+|.|..++|
T Consensus 132 ~l~R~~~~~--~~~~K~~~~v~~~~~~l~l~~~~~~~--------------------~~~~~~~Y~L~~vI~H~G~~~~G 189 (230)
T cd02674 132 HLKRFSFSR--GSTRKLTTPVTFPLNDLDLTPYVDTR--------------------SFTGPFKYDLYAVVNHYGSLNGG 189 (230)
T ss_pred EhhheecCC--CCcccCCceEeccccccccccccCcc--------------------cCCCCceEEEEEEEEeeCCCCCc
Confidence 999999986 67899999999996 69999886221 23456789999999999999999
Q ss_pred cEEEEEEeC--CcEEEEcCcceeeeCcccccCCceeEEEEE
Q 008267 519 HYVTYLRLS--NKWYKCDDAWITEVNENTVRAAQGYMMFYV 557 (572)
Q Consensus 519 HY~ayvr~~--~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~ 557 (572)
||++|+|.. ++||+|||+.|++++++++...+||||||+
T Consensus 190 HY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 190 HYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred EEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 999999986 899999999999999999989999999995
No 22
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-50 Score=413.12 Aligned_cols=324 Identities=29% Similarity=0.517 Sum_probs=272.6
Q ss_pred CCCCCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHH
Q 008267 192 GDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKF 271 (572)
Q Consensus 192 ~~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~ 271 (572)
+.-+.|++||+|-|+|||||+++|-|.++|.+|..++...+. ...+.... ..-++++++.+|..+....-..+.|..|
T Consensus 89 sRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~-td~pd~s~-~e~vl~~lQ~iF~hL~~s~lQyyVPeg~ 166 (944)
T KOG1866|consen 89 SRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGT-TDLPDMSG-DEKVLRHLQVIFGHLAASQLQYYVPEGF 166 (944)
T ss_pred CCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhccc-ccchhhcc-hHHHHHHHHHHHHHHHHHhhhhhcchhH
Confidence 344678999999999999999999999999999977654332 11111111 1128999999999999888889999999
Q ss_pred HHHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCe
Q 008267 272 LYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCV 351 (572)
Q Consensus 272 l~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~ 351 (572)
-..+..-.......+||||-|||..|||.+.+.++.....+ ++...|+|....+-.|..|-+.-...|+|.
T Consensus 167 Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p~---------lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~ 237 (944)
T KOG1866|consen 167 WKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHPQ---------LFSNTFGGSYSDQKICQGCPHRYECEESFT 237 (944)
T ss_pred HHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCcH---------HHHHHhcCccchhhhhccCCcccCccccce
Confidence 87775555677888999999999999999999988766543 578899999999999999999999999999
Q ss_pred eeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEee
Q 008267 352 DFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIR 431 (572)
Q Consensus 352 ~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~ 431 (572)
.|+|+|.. .+|+++|++|.+.|.++|.|.|+|++|+.+....|+..|.
T Consensus 238 ~l~l~i~~--------------------------------~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik 285 (944)
T KOG1866|consen 238 TLNLDIRH--------------------------------QNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIK 285 (944)
T ss_pred eeeeeccc--------------------------------chHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHh
Confidence 99999982 4899999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEee
Q 008267 432 KLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTH 511 (572)
Q Consensus 432 ~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H 511 (572)
+||+||+||||||.++..+....|.+..++||..|||.||+..+..+.+..+... .........+.+|+|+|||+|
T Consensus 286 ~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~----g~~~e~s~~t~~YeLvGVlvH 361 (944)
T KOG1866|consen 286 KLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVES----GQQLEQSAGTTKYELVGVLVH 361 (944)
T ss_pred hCChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhhhhccccCCc----CcccccccCcceeEEEEEEEe
Confidence 9999999999999999988999999999999999999999988765433222111 111223467789999999999
Q ss_pred eCCCCCCcEEEEEEe-----CCcEEEEcCcceeeeCcccccCC--------------------ceeEEEEEEeccc
Q 008267 512 TGKLDAGHYVTYLRL-----SNKWYKCDDAWITEVNENTVRAA--------------------QGYMMFYVQKMLY 562 (572)
Q Consensus 512 ~G~~~~GHY~ayvr~-----~~~W~~~dD~~V~~v~~~~v~~~--------------------~aYlLfY~r~~~~ 562 (572)
.|.+.+|||++||+. +++||+|||..|++.+..++... +||||||+|.+-.
T Consensus 362 SGqAsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~ 437 (944)
T KOG1866|consen 362 SGQASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDI 437 (944)
T ss_pred cccccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCC
Confidence 999999999999974 57999999999999887655321 8999999998643
No 23
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.1e-47 Score=366.25 Aligned_cols=236 Identities=24% Similarity=0.447 Sum_probs=188.2
Q ss_pred cccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHHHHHhcC
Q 008267 201 LNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHAS 280 (572)
Q Consensus 201 L~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~~ 280 (572)
|.|.||+||+||.+|+|.+ +++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~-------------------------------------------------------i~~~~~ 26 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSS-------------------------------------------------------IGKINT 26 (245)
T ss_pred ceecCCeeeehhHHHHHHH-------------------------------------------------------Hhhhhh
Confidence 7899999999999999853 223456
Q ss_pred CCcccccCchHHHHHHHHHHHHHHhhhccCCCCC-CCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeeccCC
Q 008267 281 NLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRS-QGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEP 359 (572)
Q Consensus 281 ~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~-~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~~ 359 (572)
.|.+++||||||||++|||.|++++......... ........+.++|.|.+.+.++|..|++++.+.|+|++|+|+++.
T Consensus 27 ~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~ 106 (245)
T cd02673 27 EFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMID 106 (245)
T ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceecccccc
Confidence 8999999999999999999999876543211110 000111224578999999999999999999999999999999986
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEE
Q 008267 360 NQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCF 439 (572)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i 439 (572)
.. ..+|++|++.|...+.++ +.|++|+.. .+.++.+|.++|+||+|
T Consensus 107 ~~-----------------------------~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i 152 (245)
T cd02673 107 NK-----------------------------LDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSI 152 (245)
T ss_pred CC-----------------------------cchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEE
Confidence 31 246899999998887775 899999985 78899999999999999
Q ss_pred EEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCC-CCCC
Q 008267 440 HIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGK-LDAG 518 (572)
Q Consensus 440 ~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~G 518 (572)
||+||.+.. ++...+.++ .++|.+|+. ....|+|+|||+|.|. +++|
T Consensus 153 ~lkRf~~~~------~~~~~~~~~-~~~~~~~~~-------------------------~~~~Y~L~~VV~H~G~~~~~G 200 (245)
T cd02673 153 NLKRYKLRI------ATSDYLKKN-EEIMKKYCG-------------------------TDAKYSLVAVICHLGESPYDG 200 (245)
T ss_pred eeEeeeecc------ccccccccc-ccccccccC-------------------------CCceEEEEEEEEECCCCCCCc
Confidence 999997653 122222221 355666542 2356999999999997 8999
Q ss_pred cEEEEEEe---CCcEEEEcCcceeeeCccccc---CCceeEEEEE
Q 008267 519 HYVTYLRL---SNKWYKCDDAWITEVNENTVR---AAQGYMMFYV 557 (572)
Q Consensus 519 HY~ayvr~---~~~W~~~dD~~V~~v~~~~v~---~~~aYlLfY~ 557 (572)
||+||+|. +++||.|||+.|+++++++|+ ..+||||||+
T Consensus 201 HY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 201 HYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred eEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 99999996 689999999999999999998 5799999995
No 24
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-48 Score=394.75 Aligned_cols=305 Identities=26% Similarity=0.486 Sum_probs=261.4
Q ss_pred CCCCCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHH
Q 008267 192 GDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKF 271 (572)
Q Consensus 192 ~~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~ 271 (572)
+....|++||+|.|.||||||+||+|+.+..||+.+...+... +.....+.-+|+++|..|..+ ..|++..+|
T Consensus 187 SKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~------p~grdSValaLQr~Fynlq~~-~~PvdTtel 259 (1089)
T COG5077 187 SKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDH------PRGRDSVALALQRLFYNLQTG-EEPVDTTEL 259 (1089)
T ss_pred cccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCC------CCccchHHHHHHHHHHHHhcc-CCCcchHHh
Confidence 4557899999999999999999999999999999987654321 122445778999999999765 567888888
Q ss_pred HHHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCe
Q 008267 272 LYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCV 351 (572)
Q Consensus 272 l~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~ 351 (572)
....+. ..+....|||.|||-+.|.|.|+..++...-. ..+..+|-|++.+-+.|..-...|.+.|.||
T Consensus 260 trsfgW--ds~dsf~QHDiqEfnrVl~DnLEksmrgt~VE---------naln~ifVgkmksyikCvnvnyEsarvedfw 328 (1089)
T COG5077 260 TRSFGW--DSDDSFMQHDIQEFNRVLQDNLEKSMRGTVVE---------NALNGIFVGKMKSYIKCVNVNYESARVEDFW 328 (1089)
T ss_pred hhhcCc--ccchHHHHHhHHHHHHHHHHHHHHhhcCChhh---------hHHhHHHHHHhhceeeEEEechhhhhHHHHH
Confidence 877633 34566799999999999999999865543322 1377899999999999999999999999999
Q ss_pred eeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEee
Q 008267 352 DFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIR 431 (572)
Q Consensus 352 ~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~ 431 (572)
++.|.+.. ..+|++.+++|.+.|.++|+|+|.|++-|- +.|.|..-|.
T Consensus 329 diqlNvK~-------------------------------~knLqeSfr~yIqvE~l~GdN~Y~ae~~Gl-qdAkKGViFe 376 (1089)
T COG5077 329 DIQLNVKG-------------------------------MKNLQESFRRYIQVETLDGDNRYNAEKHGL-QDAKKGVIFE 376 (1089)
T ss_pred HHHhcccc-------------------------------hhhHHHHHHHhhhheeccCCcccccccccc-hhhccceeec
Confidence 99999984 459999999999999999999999998664 8899999999
Q ss_pred cCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEee
Q 008267 432 KLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTH 511 (572)
Q Consensus 432 ~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H 511 (572)
+||+||.+|||||+++..+....||++..+||+++||.||++....++ ......|.|+||++|
T Consensus 377 SlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ks-----------------en~d~vY~LygVlVH 439 (1089)
T COG5077 377 SLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKS-----------------ENSDAVYVLYGVLVH 439 (1089)
T ss_pred cCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhh-----------------cccCcEEEEEEEEEe
Confidence 999999999999999998899999999999999999999998764331 223488999999999
Q ss_pred eCCCCCCcEEEEEE--eCCcEEEEcCcceeeeCcccccCC----------------------ceeEEEEEEecccc
Q 008267 512 TGKLDAGHYVTYLR--LSNKWYKCDDAWITEVNENTVRAA----------------------QGYMMFYVQKMLYY 563 (572)
Q Consensus 512 ~G~~~~GHY~ayvr--~~~~W~~~dD~~V~~v~~~~v~~~----------------------~aYlLfY~r~~~~~ 563 (572)
.|..+.|||+|++| .+|+||+|||++|++++..+|+.. .||||+|-|++...
T Consensus 440 sGDl~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~~d 515 (1089)
T COG5077 440 SGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSMLD 515 (1089)
T ss_pred ccccCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhHHH
Confidence 99999999999999 589999999999999999888642 78999999996443
No 25
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.4e-47 Score=380.22 Aligned_cols=304 Identities=23% Similarity=0.315 Sum_probs=218.2
Q ss_pred cccccCCchhhHHHHHHHHhCChhHHHHHhcCCCccc----------ccccCC------CCcccHHHHHHHHHHHHHcCC
Q 008267 199 RGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRY----------YCQSKN------GVRLCLACDLDTMFSAIFCGD 262 (572)
Q Consensus 199 ~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~----------~~~~~~------~~~~~l~~~l~~l~~~l~~~~ 262 (572)
+||.|+||||||||+||+|+++|+||++++....... .+.... ....+++.+|+.||..|+.+.
T Consensus 2 vGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s~ 81 (343)
T cd02666 2 AGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHSN 81 (343)
T ss_pred CCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhCC
Confidence 7999999999999999999999999999987542210 000000 012368999999999999988
Q ss_pred CCccChHHHHHHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCC----CCCCCcccccccccceEEeeEEEeC
Q 008267 263 RMPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPR----SQGNGDCCIAHRVFSGILRSDVMCM 338 (572)
Q Consensus 263 ~~~i~p~~~l~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~----~~~~~~~~~i~~~F~g~l~s~i~C~ 338 (572)
...++|..++..+. ..||||+||+..||+.|+.+++....... .......++|+++|.|++.+.++|.
T Consensus 82 ~~~v~P~~~l~~l~--------~~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c~ 153 (343)
T cd02666 82 TRSVTPSKELAYLA--------LRQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVPE 153 (343)
T ss_pred CCccCcHHHHHhcc--------ccccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEec
Confidence 88999999987653 28999999999999999998875442110 0111223789999999999999999
Q ss_pred cCC---CeeeeeeCCeeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCcccc
Q 008267 339 ACG---FTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFC 415 (572)
Q Consensus 339 ~C~---~~s~~~e~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C 415 (572)
.|+ .++.+.|+|++|+|+|+..... ..+..+..+|++||+.|+..|.
T Consensus 154 ~~~~~~~~s~~~E~F~~L~l~I~~~~~~---------------------~~~~~~~~~L~d~L~~~~~~e~--------- 203 (343)
T cd02666 154 SMGNQPSVRTKTERFLSLLVDVGKKGRE---------------------IVVLLEPKDLYDALDRYFDYDS--------- 203 (343)
T ss_pred ccCCCCCCccccceeEEEEEecCccccc---------------------ccccCCCCCHHHHHHHhcChhh---------
Confidence 997 7899999999999999863210 0111135799999999998875
Q ss_pred ccccccceeEEEEEeecCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCC------CccCCC
Q 008267 416 QQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGN------RFFPFD 489 (572)
Q Consensus 416 ~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~------~~~~~~ 489 (572)
|.++|+||.|||+ +.+. .....+..++.+||...|..+++.....+..... +.....
T Consensus 204 --------------~~~~P~vl~~qlq-~~~~--~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 266 (343)
T cd02666 204 --------------LTKLPQRSQVQAQ-LAQP--LQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELK 266 (343)
T ss_pred --------------hccCCHHHHHHHh-hccc--ccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999 2221 2233344445555554444444322111100000 000000
Q ss_pred -CCCCCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEe--CCcEEEEcCcceeeeCcccccC------CceeEEEEE
Q 008267 490 -GDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRL--SNKWYKCDDAWITEVNENTVRA------AQGYMMFYV 557 (572)
Q Consensus 490 -~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~--~~~W~~~dD~~V~~v~~~~v~~------~~aYlLfY~ 557 (572)
.-+....+.....|+|+|||+|.|..++|||++|+|. ++.||+|||..|++++.++|+. ++||||+|.
T Consensus 267 ~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 267 HEIEKQFDDLKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred HHHHHhhcccCCCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 0000112346778999999999999999999999996 4799999999999999988875 499999994
No 26
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.7e-46 Score=350.78 Aligned_cols=218 Identities=27% Similarity=0.451 Sum_probs=183.2
Q ss_pred ccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHHHHHhc
Q 008267 200 GLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHA 279 (572)
Q Consensus 200 GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~ 279 (572)
||.|.|||||+|+|.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999976
Q ss_pred CCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeeccCC
Q 008267 280 SNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEP 359 (572)
Q Consensus 280 ~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~~ 359 (572)
.||||+||+..||+.|++.+...... .........+|.++|.|++.+.+.| |+..+.+.|+|++|+|+|..
T Consensus 21 ------~QQDa~Ef~~~Lld~Le~~l~~~~~~-~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~ 91 (228)
T cd02665 21 ------QQQDVSEFTHLLLDWLEDAFQAAAEA-ISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNG 91 (228)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhcccccc-ccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECC
Confidence 69999999999999999988643211 0011122357999999999987776 77889999999999999974
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEE
Q 008267 360 NQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCF 439 (572)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i 439 (572)
..+|++||+.|+.+|.+++++. .....+.++..|.++|+||+|
T Consensus 92 -------------------------------~~~L~e~L~~~~~ee~l~~~~~------~~~~~~~~~~~i~~lP~vL~i 134 (228)
T cd02665 92 -------------------------------YGNLHECLEAAMFEGEVELLPS------DHSVKSGQERWFTELPPVLTF 134 (228)
T ss_pred -------------------------------CCCHHHHHHHhhhhcccccccc------cchhhhhhhhhhhhCChhhEE
Confidence 3599999999999999986432 223445677789999999999
Q ss_pred EEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCCCCCc
Q 008267 440 HIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGH 519 (572)
Q Consensus 440 ~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GH 519 (572)
||+||.++. ....|+.+.|.||..|. ...|+|+|||+|.|.+++||
T Consensus 135 ~LkRF~~~~--~~~~Ki~~~v~FP~~l~--------------------------------~~~Y~L~aVi~H~G~~~~GH 180 (228)
T cd02665 135 ELSRFEFNQ--GRPEKIHDKLEFPQIIQ--------------------------------QVPYELHAVLVHEGQANAGH 180 (228)
T ss_pred EeEeeEEcC--CccEECCEEEEeeCccC--------------------------------CceeEEEEEEEecCCCCCCE
Confidence 999999986 56899999999998871 13699999999999999999
Q ss_pred EEEEEEe--CCcEEEEcCcceeeeCcccccC--------CceeEEEEE
Q 008267 520 YVTYLRL--SNKWYKCDDAWITEVNENTVRA--------AQGYMMFYV 557 (572)
Q Consensus 520 Y~ayvr~--~~~W~~~dD~~V~~v~~~~v~~--------~~aYlLfY~ 557 (572)
|++|+|. +++||+|||+.|+++++++|.. ..||||||.
T Consensus 181 Y~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 181 YWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred EEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 9999985 6899999999999999998863 489999994
No 27
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.9e-45 Score=364.64 Aligned_cols=258 Identities=34% Similarity=0.610 Sum_probs=204.6
Q ss_pred ccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCccccc-ccCCCCcccHHHHHHHHHHHHHcC--CCCccChHHHHHH
Q 008267 198 LRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYC-QSKNGVRLCLACDLDTMFSAIFCG--DRMPYSPAKFLYS 274 (572)
Q Consensus 198 ~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~-~~~~~~~~~l~~~l~~l~~~l~~~--~~~~i~p~~~l~~ 274 (572)
.+||.|.||||||||+||+|+++|+|+++++......... ........++.++|..+|..++.. ....+.|..|+..
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 3799999999999999999999999999998752111111 111123457999999999999988 6677999999999
Q ss_pred HHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCC--CCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCee
Q 008267 275 WWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHK--PRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVD 352 (572)
Q Consensus 275 l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~--~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~ 352 (572)
+....+.|..++||||+|||..||+.|+++....... .........+++.++|.+.+.+.+.|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 9999888999999999999999999999986653220 00001122367899999999999999998764
Q ss_pred eeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeec
Q 008267 353 FSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRK 432 (572)
Q Consensus 353 lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~ 432 (572)
+..|.+
T Consensus 152 --------------------------------------------------------------------------~~~~~~ 157 (269)
T PF00443_consen 152 --------------------------------------------------------------------------QSSISS 157 (269)
T ss_dssp --------------------------------------------------------------------------EEEEEE
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 346889
Q ss_pred CCceEEEEEEEeEecCCCccccccceeeecC-CCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEee
Q 008267 433 LPLVSCFHIKRFEHSSVRKMSRKVDRYLQFP-LSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTH 511 (572)
Q Consensus 433 lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H 511 (572)
+|++|+|+|+||.++...+...|+...|.|| ..|||++++..... .......|+|+|||+|
T Consensus 158 ~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~------------------~~~~~~~Y~L~avi~H 219 (269)
T PF00443_consen 158 LPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNS------------------ECQSNVKYRLVAVIVH 219 (269)
T ss_dssp BBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCC------------------THTSSSEEEEEEEEEE
T ss_pred ccceeeeccccceeccccccccccccccccCchhhhhhhhhccccc------------------cccccceeeehhhhcc
Confidence 9999999999999887667789999999999 69999998865310 0113579999999999
Q ss_pred eCCCCCCcEEEEEEeCC--cEEEEcCcceeeeCcccccC---CceeEEEE
Q 008267 512 TGKLDAGHYVTYLRLSN--KWYKCDDAWITEVNENTVRA---AQGYMMFY 556 (572)
Q Consensus 512 ~G~~~~GHY~ayvr~~~--~W~~~dD~~V~~v~~~~v~~---~~aYlLfY 556 (572)
.|..++|||+||+|..+ +|++|||++|+++++++|.. .+||||||
T Consensus 220 ~G~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 220 YGSADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp ESSTTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred ccccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 99999999999998754 59999999999999999988 89999999
No 28
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-43 Score=389.25 Aligned_cols=344 Identities=33% Similarity=0.594 Sum_probs=279.8
Q ss_pred CCCCCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCccccc-ccCCCCcccHHHHHHHHHHHHHcCCCCccChHH
Q 008267 192 GDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYC-QSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAK 270 (572)
Q Consensus 192 ~~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~-~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~ 270 (572)
....+|.+||.|+|||||||+.+|+|.+.+.++++|+...+..... ....+....+...+..+...+|++....+.|..
T Consensus 240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~ 319 (842)
T KOG1870|consen 240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTS 319 (842)
T ss_pred CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchh
Confidence 3456899999999999999999999999999999998766554111 222234556777888999999999887899999
Q ss_pred HHHHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCC--------------------CCCcccccccccceE
Q 008267 271 FLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQ--------------------GNGDCCIAHRVFSGI 330 (572)
Q Consensus 271 ~l~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~--------------------~~~~~~~i~~~F~g~ 330 (572)
+...+....+.|.|+.|||.+||+-+++|.||+.+.....++... .....+++.++|.|.
T Consensus 320 ~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~ 399 (842)
T KOG1870|consen 320 FRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGT 399 (842)
T ss_pred hhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecce
Confidence 999999999999999999999999999999999988776662211 112337899999999
Q ss_pred EeeEEEeCcCCCeeeeeeCCeeeeeccCCCCC------------------------------------------------
Q 008267 331 LRSDVMCMACGFTSTTFDPCVDFSLDLEPNQG------------------------------------------------ 362 (572)
Q Consensus 331 l~s~i~C~~C~~~s~~~e~f~~lsL~i~~~~~------------------------------------------------ 362 (572)
+.+.++|..|+.++.++++|..|+|++|....
T Consensus 400 ~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 479 (842)
T KOG1870|consen 400 YKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELK 479 (842)
T ss_pred ecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhcc
Confidence 99999999999999999999999999996442
Q ss_pred ---------------------------------CC------------------ccc------------------------
Q 008267 363 ---------------------------------SS------------------MKT------------------------ 367 (572)
Q Consensus 363 ---------------------------------~~------------------~~~------------------------ 367 (572)
.. ...
T Consensus 480 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 559 (842)
T KOG1870|consen 480 PVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLS 559 (842)
T ss_pred cceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccC
Confidence 00 000
Q ss_pred -cCCCC---------------CC-------------CCC-----------------------------CCCCC-------
Q 008267 368 -SSTKS---------------NH-------------SCN-----------------------------CEADG------- 382 (572)
Q Consensus 368 -~~~~~---------------~~-------------~~~-----------------------------~~~~~------- 382 (572)
..... .. ... .....
T Consensus 560 ~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (842)
T KOG1870|consen 560 GAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQ 639 (842)
T ss_pred CCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCcccccccc
Confidence 00000 00 000 00000
Q ss_pred ----------------C--------------------C-----------CCCCCCCCcHHHHHHhcCCccccCCCCcccc
Q 008267 383 ----------------M--------------------N-----------SSQNCGISTLMGCLDRFTRPERLGSDQKFFC 415 (572)
Q Consensus 383 ----------------~--------------------~-----------~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C 415 (572)
. . ........+|++||+.|+.+|.|..++.+.|
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C 719 (842)
T KOG1870|consen 640 SLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYC 719 (842)
T ss_pred cccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccC
Confidence 0 0 0000126799999999999999999999999
Q ss_pred ccccccceeEEEEEeecCCceEEEEEEEeEecCCCccccccceeeecCC-CCCCccccchhhhccccCCCccCCCCCCCC
Q 008267 416 QQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPL-SLDMAPYLSSSILRSRFGNRFFPFDGDESN 494 (572)
Q Consensus 416 ~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (572)
+.|+..+.|+|++.+++||+||+||||||++.. ....|+.+.|+||. .||+++|+...
T Consensus 720 ~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r--~~~~k~~~~v~fPi~~ld~s~~~~~~------------------- 778 (842)
T KOG1870|consen 720 PQCKELRQATKKLDLWRLPEILIIHLKRFQYSR--ESSSKVKTKVEFPLGSLDLSEFVVNK------------------- 778 (842)
T ss_pred hHHHHHHHHhhhhhhhhCCceEEEEeecceeec--hhhhhhCccccCCCcCCCcchhhccC-------------------
Confidence 999999999999999999999999999999996 66799999999998 79999998642
Q ss_pred CCCCCCccEEEEEEEeeeCCCCCCcEEEEEEe--CCcEEEEcCcceeeeCcccccCCceeEEEEEEec
Q 008267 495 TLNEPSSEFELFAVVTHTGKLDAGHYVTYLRL--SNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKM 560 (572)
Q Consensus 495 ~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~--~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r~~ 560 (572)
....|+|+||++|+|.+.+|||+||.|. +++||.|||+.|.+++++++....||+|||+|++
T Consensus 779 ----~~~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 779 ----EQVLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred ----ccceeeeeeeecccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 2289999999999999999999999996 7899999999999999999999999999999974
No 29
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-41 Score=331.53 Aligned_cols=245 Identities=41% Similarity=0.753 Sum_probs=205.8
Q ss_pred ccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHHHHHhc
Q 008267 200 GLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHA 279 (572)
Q Consensus 200 GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~ 279 (572)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred CCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeeccCC
Q 008267 280 SNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEP 359 (572)
Q Consensus 280 ~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~~ 359 (572)
.||||+|||..+|+.|+.++....... .......+.+.++|.|.+.+.+.|..|+..+.....+..+.|++|.
T Consensus 21 ------~q~Da~E~l~~ll~~l~~~~~~~~~~~-~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~ 93 (255)
T cd02257 21 ------EQQDAHEFLLFLLDKLHEELKKSSKRT-SDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPV 93 (255)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhhcccc-cccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccC
Confidence 899999999999999999876533210 0011112468999999999999999999888888888889998886
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCcccccccc--ccceeEEEEEeecCCceE
Q 008267 360 NQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQ--VRQESLKQMSIRKLPLVS 437 (572)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~--~~~~~~k~~~i~~lP~vL 437 (572)
... ...+|+++|+.++..|.+.+ ..|..|+ ..+.+.++..|.++|++|
T Consensus 94 ~~~---------------------------~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L 143 (255)
T cd02257 94 KGL---------------------------PQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVL 143 (255)
T ss_pred CCC---------------------------CCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCcee
Confidence 420 24699999999999998874 7788898 678889999999999999
Q ss_pred EEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCC-CC
Q 008267 438 CFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGK-LD 516 (572)
Q Consensus 438 ~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~ 516 (572)
+|+++||.++. .+...|+...|.||..|++..++... ............|+|+|||+|.|. ++
T Consensus 144 ~i~l~R~~~~~-~~~~~k~~~~v~~~~~l~~~~~~~~~---------------~~~~~~~~~~~~Y~L~~vi~h~G~~~~ 207 (255)
T cd02257 144 IIHLKRFSFNE-DGTKEKLNTKVSFPLELDLSPYLSEG---------------EKDSDSDNGSYKYELVAVVVHSGTSAD 207 (255)
T ss_pred EEEeeceeecc-ccccccCCCeEeCCCcccCccccccc---------------cccccccCCCccEEEEEEEEEecCCCC
Confidence 99999999885 26788999999999999998887531 001113345678999999999999 59
Q ss_pred CCcEEEEEEeC--CcEEEEcCcceeeeCcccc-----cCCceeEEEEE
Q 008267 517 AGHYVTYLRLS--NKWYKCDDAWITEVNENTV-----RAAQGYMMFYV 557 (572)
Q Consensus 517 ~GHY~ayvr~~--~~W~~~dD~~V~~v~~~~v-----~~~~aYlLfY~ 557 (572)
+|||++|+|.. ++||+|||..|++++.+++ ...+||||||+
T Consensus 208 ~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 208 SGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred CcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEEEC
Confidence 99999999976 8999999999999999998 56799999995
No 30
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.7e-42 Score=333.67 Aligned_cols=241 Identities=23% Similarity=0.363 Sum_probs=193.8
Q ss_pred CCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHH
Q 008267 195 PRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYS 274 (572)
Q Consensus 195 ~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~ 274 (572)
..++.||.|.|.|||+||+||+|+++|+||+++. +....|.. ..|++|+|..||.. +
T Consensus 12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~---~~~~~~~~----~~~l~~el~~lfs~-------------~--- 68 (268)
T cd02672 12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTA---IILVACPK----ESCLLCELGYLFST-------------L--- 68 (268)
T ss_pred cccccccccCCccchHHHHHHHHHhcHHHHHHHH---hhcccCCc----CccHHHHHHHHHHH-------------H---
Confidence 3469999999999999999999999999999732 22222443 67999999999911 1
Q ss_pred HHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeee
Q 008267 275 WWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFS 354 (572)
Q Consensus 275 l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~ls 354 (572)
.+-|-.+|++.+..+... .+ ..|++++.+.+++++|+
T Consensus 69 ---------------iq~F~~fll~~i~~~~~~------------------~~----------~~C~~~s~~~~~~~~Ls 105 (268)
T cd02672 69 ---------------IQNFTRFLLETISQDQLG------------------TP----------FSCGTSRNSVSLLYTLS 105 (268)
T ss_pred ---------------HHHHHHHHHHHHHHHhcc------------------cC----------CCCCceeeccccceeee
Confidence 144677788888764321 01 67999999999999999
Q ss_pred eccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCC
Q 008267 355 LDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLP 434 (572)
Q Consensus 355 L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP 434 (572)
|++|... .....+|++||+.|++.|.. +++.|++|++++.++|+.+|.++|
T Consensus 106 Lpip~~~--------------------------~~~~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP 156 (268)
T cd02672 106 LPLGSTK--------------------------TSKESTFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLP 156 (268)
T ss_pred eecCccc--------------------------cccCCCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCC
Confidence 9999632 01356999999999999865 368999999999999999999999
Q ss_pred c----eEEEEEEEeEecCCC-----ccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEE
Q 008267 435 L----VSCFHIKRFEHSSVR-----KMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFEL 505 (572)
Q Consensus 435 ~----vL~i~lkRf~~~~~~-----~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L 505 (572)
+ ||+||||||...... ....|+...|.||..+++..+...+ .....+|+|
T Consensus 157 ~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~---------------------~~~~~~Y~L 215 (268)
T cd02672 157 DILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNRG---------------------QESIYKYEL 215 (268)
T ss_pred CcccceEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhccC---------------------CCCCceEEE
Confidence 9 999999999875311 2346788899999988776544221 234578999
Q ss_pred EEEEeeeCC-CCCCcEEEEEEe------CCcEEEEcCcceeeeCcccccCCceeEEEEE
Q 008267 506 FAVVTHTGK-LDAGHYVTYLRL------SNKWYKCDDAWITEVNENTVRAAQGYMMFYV 557 (572)
Q Consensus 506 ~avV~H~G~-~~~GHY~ayvr~------~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~ 557 (572)
+|||+|.|. .++|||+||+|. .++||+|||..|++|++ .||||||+
T Consensus 216 ~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiLfY~ 268 (268)
T cd02672 216 VGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYILLYQ 268 (268)
T ss_pred EEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hheeeecC
Confidence 999999998 599999999997 57999999999999998 89999995
No 31
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-42 Score=347.72 Aligned_cols=302 Identities=21% Similarity=0.413 Sum_probs=238.9
Q ss_pred CCCCCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHH
Q 008267 192 GDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKF 271 (572)
Q Consensus 192 ~~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~ 271 (572)
..-+.|++||+|-..|||+|+.+|+|+-.|.|++.+..... ..+...+|
T Consensus 81 ~~~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~~-------------------------------~~~et~dl 129 (1203)
T KOG4598|consen 81 DENGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSEN-------------------------------DSLETKDL 129 (1203)
T ss_pred ccCCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCCc-------------------------------ccccchhh
Confidence 34578999999999999999999999999999998753211 11122223
Q ss_pred HHHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCe
Q 008267 272 LYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCV 351 (572)
Q Consensus 272 l~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~ 351 (572)
-+.++.. .-..++|||.+|+-+.++|+|+...+..... ..|.++++|++..-+.|.+|+..+++.+.|+
T Consensus 130 t~sfgw~--s~ea~~qhdiqelcr~mfdalehk~k~t~~~---------~li~~ly~g~m~d~v~cl~c~~e~~~~d~fl 198 (1203)
T KOG4598|consen 130 TQSFGWT--SNEAYDQHDVQELCRLMFDALEHKWKGTEHE---------KLIQDLYRGTMEDFVACLKCGRESVKTDYFL 198 (1203)
T ss_pred HhhcCCC--cchhhhhhhHHHHHHHHHHHHHhhhcCchHH---------HHHHHHhcchHHHHHHHHHcCccccccceee
Confidence 3333111 1234899999999999999999866544322 3689999999999999999999999999999
Q ss_pred eeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEee
Q 008267 352 DFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIR 431 (572)
Q Consensus 352 ~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~ 431 (572)
+|.|++.+-... ..-.+++++|..|..||.|+|.|.|-|++|++++.+.|.++|+
T Consensus 199 d~pl~v~pfg~~-------------------------~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~ 253 (1203)
T KOG4598|consen 199 DLPLAVKPFGAI-------------------------HAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRIT 253 (1203)
T ss_pred cccccccCCcch-------------------------hhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceee
Confidence 999999864311 1245899999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccc------cC-CCccC-----------------
Q 008267 432 KLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSR------FG-NRFFP----------------- 487 (572)
Q Consensus 432 ~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~------~~-~~~~~----------------- 487 (572)
++|-+|.||||||.++..+....|+++.|.||..|||..|+..+..... .+ +....
T Consensus 254 ~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 333 (1203)
T KOG4598|consen 254 QFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTP 333 (1203)
T ss_pred ccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcc
Confidence 9999999999999999888899999999999999999999865431000 00 00000
Q ss_pred -------CCCCC----C----------CCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEe--CCcEEEEcCcceeeeCcc
Q 008267 488 -------FDGDE----S----------NTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRL--SNKWYKCDDAWITEVNEN 544 (572)
Q Consensus 488 -------~~~~~----~----------~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~--~~~W~~~dD~~V~~v~~~ 544 (572)
..++. . .....++..|+|+||.+|.|++.+|||++|+|+ +++||.|||.+|+.++..
T Consensus 334 ~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~ 413 (1203)
T KOG4598|consen 334 GVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPL 413 (1203)
T ss_pred cccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCCCCCceeeeeecccCcCceEEecCccccccCHH
Confidence 00000 0 011235678999999999999999999999995 789999999999999998
Q ss_pred cccC-------------CceeEEEEEEec
Q 008267 545 TVRA-------------AQGYMMFYVQKM 560 (572)
Q Consensus 545 ~v~~-------------~~aYlLfY~r~~ 560 (572)
++.. .+||||.|+|.+
T Consensus 414 ~i~~sfgg~~~~~~~s~tnaymlmyr~id 442 (1203)
T KOG4598|consen 414 EIEKSFGGHPSGWNQSNTNAYMLMYRRID 442 (1203)
T ss_pred HHHHhhCCCCCCccccCcchhhhhhhhcC
Confidence 8753 389999999865
No 32
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=100.00 E-value=9.8e-40 Score=312.14 Aligned_cols=401 Identities=21% Similarity=0.314 Sum_probs=301.7
Q ss_pred CcccCCCCCCCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCC-CceeeccCCceeeCCchhhHHhhh
Q 008267 64 PRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDR-AELFCCACRDQVYDRDFDAAVVLA 142 (572)
Q Consensus 64 ~~C~~C~~~~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~-~~~~C~~c~~~v~~~~~~~~~~~~ 142 (572)
..|+.- . +.-+.++||.||....| +...+||+.|. -+.+|.+++++.+ ...|+..-+++|.|+.+.+++..-
T Consensus 30 k~c~vs-l-snLnvyAclvcg~y~qg-r~~kS~A~~h~----l~~ghhvf~nl~telkfyvlpe~~ei~d~s~~~ikhsl 102 (442)
T KOG2026|consen 30 KPCSVS-L-SNLNVYACLVCGKYFQG-RGEKSHAYTHS----LEEGHHVFLNLSTELKFYVLPENYEIDDPSLGDIKHSL 102 (442)
T ss_pred CCCccc-c-cccceeeeeeeCchhhC-cCccccchhcc----ccccccceeccccceeEEecchhccccCchhhhhhccc
Confidence 447776 3 34789999999999998 88999999999 7899999999988 788888888899998887665321
Q ss_pred ceeccccCCChhhhhhhcccCCCCCCCChhhhhhcccCCCCCCCCCCCCCCCCCcccccccCCchhhHHHHHHHHhCChh
Q 008267 143 HTTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGDLPRGLRGLNNLGNTCFMNSVLQALFHTPP 222 (572)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~ 222 (572)
+.. .+ +. --|.... ..+..+.+.....+-+|++||.|+.++-|.|++||+|.+.++
T Consensus 103 kpt----------ft--r~-----~cp~lD~-------~nr~~~raLd~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~P 158 (442)
T KOG2026|consen 103 KPT----------FT--KT-----DCPNLDK-------VNRKLSRALDGSTYLPGFVGLNNIKANDYANAVLQALSHVVP 158 (442)
T ss_pred cce----------ee--hh-----hcccccc-------cchhhhhhhcCCcceeeeeccchhhhHHHHHHHHHHHhccch
Confidence 110 00 00 0000000 001111223446788999999999999999999999999999
Q ss_pred HHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCC--CccChHHHHHHHHHh-cCCCcccccCchHHHHHHHHH
Q 008267 223 LRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDR--MPYSPAKFLYSWWRH-ASNLASYEQQDAHEFFISMLD 299 (572)
Q Consensus 223 fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~--~~i~p~~~l~~l~~~-~~~f~~~~QqDA~Efl~~lLd 299 (572)
+|+||+........ ...+...|..+.+++|+... ..++|.+|++++... ...|..++|-|+.|||.|||+
T Consensus 159 lRnyFl~~~n~~d~-------~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~~s~k~f~i~~q~DpveFlswlln 231 (442)
T KOG2026|consen 159 LRNYFLLEENYFDN-------LTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLN 231 (442)
T ss_pred hhhhhcccccccch-------hHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHH
Confidence 99999876332211 33578889999999999874 459999999998654 457999999999999999999
Q ss_pred HHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCc----CCCeeeeeeCCeeeeeccCCCCCCCccccCCCCCCC
Q 008267 300 GIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMA----CGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHS 375 (572)
Q Consensus 300 ~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~----C~~~s~~~e~f~~lsL~i~~~~~~~~~~~~~~~~~~ 375 (572)
.||..+...... .+||+..|+|.++...+=.. -.......-||+.|.|++|+.+-..
T Consensus 232 tlhs~l~~~k~~--------~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfk----------- 292 (442)
T KOG2026|consen 232 TLHSDLRGSKKA--------SSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPLFK----------- 292 (442)
T ss_pred HHHHHhCCCCCc--------hhHhhHhhcceEEeeeeccccccccccceEEEEeeEEEEecCCCCCccc-----------
Confidence 999988765521 25899999999876544332 1123456679999999999865211
Q ss_pred CCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEEEEEEeEecCCCccccc
Q 008267 376 CNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRK 455 (572)
Q Consensus 376 ~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~K 455 (572)
........+++.|-+.|..|.....-+ +. ....+ +++++.++|++|+||++||..+. +...|
T Consensus 293 ------D~~e~niiPQV~l~~lL~Kf~g~t~~e----~~-----~~~~~-~rf~l~k~P~ylifh~~rF~kNn--~f~ek 354 (442)
T KOG2026|consen 293 ------DVMEKNIIPQVALFDLLKKFDGETVTE----VV-----TPKLA-MRFRLTKLPRYLIFHMKRFKKNN--FFKEK 354 (442)
T ss_pred ------chhhhcccccchHHHHHHHhcCceeee----ec-----chhhh-hheeeecCCceEEEEeeeccccC--ccccc
Confidence 111222346789999999998654433 10 11222 78899999999999999999986 88999
Q ss_pred cceeeecC-CCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEe--CCcEEE
Q 008267 456 VDRYLQFP-LSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRL--SNKWYK 532 (572)
Q Consensus 456 i~~~V~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~--~~~W~~ 532 (572)
+.+.|+|| ..+|+.++...... .......|.|.|-++|. ..-|||...+++ +++||.
T Consensus 355 NpTl~~f~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~N~i~~--~e~~~~riqi~~~~s~kW~e 414 (442)
T KOG2026|consen 355 NPTLVEFPYSEVDILHVLDRLKA------------------VNHKVTQYSLVANAIHE--DEDGNFRIQIYDNSSEKWYE 414 (442)
T ss_pred CCceeeccCCccchhhhhhhccc------------------ccCccccccchhhhhcC--cccCceEEEEEeCCCcceEE
Confidence 99999999 47777666543210 12233689999999998 678999999986 579999
Q ss_pred EcCcceeeeCcccccCCceeEEEEEEe
Q 008267 533 CDDAWITEVNENTVRAAQGYMMFYVQK 559 (572)
Q Consensus 533 ~dD~~V~~v~~~~v~~~~aYlLfY~r~ 559 (572)
.+|-.|++..++-+...++||.+|+++
T Consensus 415 iqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 415 IQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred ecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999875
No 33
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=370.44 Aligned_cols=306 Identities=29% Similarity=0.465 Sum_probs=263.2
Q ss_pred CCCcc-cccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHH
Q 008267 194 LPRGL-RGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFL 272 (572)
Q Consensus 194 ~~~g~-~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l 272 (572)
...|+ +||.|+||||||||+||+|+.++.||+.+++..... ....+...+..+|+.||..|..++..++.+..|.
T Consensus 165 ~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~----~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~ 240 (1093)
T KOG1863|consen 165 RLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFT----GHEDPRRSIPLALQRLFYELQMSKRKYVDTSELT 240 (1093)
T ss_pred hcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCC----CcccccchHHHHHHHHHHHHhhcCCCCcCchhhh
Confidence 35577 999999999999999999999999999998765311 1112344588899999999999999999999999
Q ss_pred HHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCee
Q 008267 273 YSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVD 352 (572)
Q Consensus 273 ~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~ 352 (572)
..+.... ..+.+|||++||+..|+|.|+..+...... ..+.++|.|.+.+.+.|..|...+...+.|++
T Consensus 241 ~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~~---------~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d 309 (1093)
T KOG1863|consen 241 KSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKVE---------NTLQDLFTGKMKSVIKCIDVDFESSRSESFLD 309 (1093)
T ss_pred hhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchhhh---------hhhhhhhcCCcceEEEEEeeeeeccccccccC
Confidence 9986655 556799999999999999999876654421 24889999999999999999999999999999
Q ss_pred eeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeec
Q 008267 353 FSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRK 432 (572)
Q Consensus 353 lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~ 432 (572)
+.|++.. ..+|.++|..|+..|.+.|+++ .|..|...+.+.+...+.+
T Consensus 310 ~ql~~~g-------------------------------~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~ 357 (1093)
T KOG1863|consen 310 LQLNGKG-------------------------------VKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDS 357 (1093)
T ss_pred ccccccc-------------------------------hhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeecc
Confidence 9999984 4479999999999999999998 8999999999999999999
Q ss_pred CCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccch-hhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEee
Q 008267 433 LPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSS-SILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTH 511 (572)
Q Consensus 433 lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H 511 (572)
||+||.|+|+||.++..++...|++..+.||..|+|.+|+.. ... .......|+|+||.+|
T Consensus 358 lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~------------------~~~~~~~y~l~~v~vh 419 (1093)
T KOG1863|consen 358 LPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAE------------------ESERSAVYSLHAVLVH 419 (1093)
T ss_pred CCchhhhhhhheeeeccCCceeehhhccCCccccccchhccccchh------------------hhhccceeccchhhcc
Confidence 999999999999999888999999999999999999999864 110 1122269999999999
Q ss_pred eCCCCCCcEEEEEE--eCCcEEEEcCcceeeeCcccccCC----------------ceeEEEEEEeccccc
Q 008267 512 TGKLDAGHYVTYLR--LSNKWYKCDDAWITEVNENTVRAA----------------QGYMMFYVQKMLYYK 564 (572)
Q Consensus 512 ~G~~~~GHY~ayvr--~~~~W~~~dD~~V~~v~~~~v~~~----------------~aYlLfY~r~~~~~~ 564 (572)
.|..++|||++|++ ..++|++|||..|+.++..+++.. .||+|+|.|.+...+
T Consensus 420 ~g~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~~~ 490 (1093)
T KOG1863|consen 420 SGDAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCESK 490 (1093)
T ss_pred cccccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcHHh
Confidence 88899999999999 589999999999999998766532 289999999875543
No 34
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=2.9e-35 Score=295.08 Aligned_cols=285 Identities=22% Similarity=0.394 Sum_probs=238.2
Q ss_pred cccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHH-cCCCCccChHHHHHHHHH
Q 008267 199 RGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIF-CGDRMPYSPAKFLYSWWR 277 (572)
Q Consensus 199 ~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~~~~~~i~p~~~l~~l~~ 277 (572)
.||.|.+++||+||+||+|+.+|++|+.++... .|.. ..||+|+|.-||..|. .+......+..|+.++..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~----~c~~----e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~ 72 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL----ECPK----EFCLLCELGFLFDMLDSKAKGINCQASNFLRALSW 72 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc----CCCc----cccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhc
Confidence 499999999999999999999999999998865 2444 7899999999999999 777778889999999877
Q ss_pred hcCCCcccccCchHHHHHHHHHHHHHHhhhccCCC----CCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeee
Q 008267 278 HASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKP----RSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDF 353 (572)
Q Consensus 278 ~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~----~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~l 353 (572)
.......+.|+|.++|+++||++|+.++....... ..........+.++|+......++|..|+..+.+.+..+.+
T Consensus 73 ~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~ 152 (295)
T PF13423_consen 73 IPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVL 152 (295)
T ss_pred CHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeee
Confidence 65445556799999999999999999877655421 11112223568999999999999999999999999999888
Q ss_pred eeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecC
Q 008267 354 SLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKL 433 (572)
Q Consensus 354 sL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~l 433 (572)
.|..|... ...++.++|+.++..|... +..|++|++.+....+..|.++
T Consensus 153 ~l~yp~~~----------------------------~~~tf~~~Le~sl~~e~~~---~a~C~~C~~~~~~~~~r~i~~L 201 (295)
T PF13423_consen 153 DLPYPPSN----------------------------SNVTFSQVLEHSLNREQQT---RAWCEKCNKYQPTEQRRTIRSL 201 (295)
T ss_pred eccCCCCC----------------------------ccchHHHHHHHHHhhcccc---cccccccccccceeeeeeccCC
Confidence 88888633 3579999999999988887 4899999999999999999999
Q ss_pred CceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeC
Q 008267 434 PLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTG 513 (572)
Q Consensus 434 P~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G 513 (572)
|+||.|.++|.... ..| ..|....+.||..+++..++....... .....+..+|+|.|+|+|.|
T Consensus 202 PpVL~In~~~~~~~-~~w-~~~~~~~~~ip~~i~~~~~~~~~~~~~--------------~~~~~~~~~Y~L~~~V~~i~ 265 (295)
T PF13423_consen 202 PPVLSINLNRYSEE-EFW-PKKNWLKIWIPPSINLPHFIADDSQSD--------------LEGESGIFKYELRSMVCHIG 265 (295)
T ss_pred CcEEEEEccCCCcc-ccc-ccccCCceecceeeecccccccccccc--------------ccCCCCceEEEEEEEEEEec
Confidence 99999999999888 346 889999999999999987765431100 00345678999999999999
Q ss_pred C-CCCCcEEEEEEeC----CcEEEEcCcce
Q 008267 514 K-LDAGHYVTYLRLS----NKWYKCDDAWI 538 (572)
Q Consensus 514 ~-~~~GHY~ayvr~~----~~W~~~dD~~V 538 (572)
. .++||||||||.. ++||+|||-.|
T Consensus 266 ~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 266 DSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred CCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 9 9999999999974 79999999765
No 35
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-35 Score=283.30 Aligned_cols=199 Identities=20% Similarity=0.293 Sum_probs=138.6
Q ss_pred ccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeeccCCCCCCCc
Q 008267 286 EQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSM 365 (572)
Q Consensus 286 ~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~~~~~~~~ 365 (572)
+|||+.|||.+|++.|...+-.. .-++|.|.....-.. +.-.|.++.|.++.+...
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~~~--------------~~~~~~~g~~~~~~~------~~~~e~~l~l~ip~~~~~---- 77 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLLEP--------------KVDIIHGGKKDQDDD------KLVNERLLQIPVPDDDDG---- 77 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhhhH--------------HHHHHhcCccccccc------cccccceEEeecccCCCC----
Confidence 79999999999999988643321 224454432111000 222345555444433211
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEEEEEEeE
Q 008267 366 KTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFE 445 (572)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~ 445 (572)
+.++|++||+.|+..|. |.++|++|+||||||.
T Consensus 78 ------------------------~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~ 110 (241)
T cd02670 78 ------------------------GGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYG 110 (241)
T ss_pred ------------------------CcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccc
Confidence 36899999999998885 7899999999999999
Q ss_pred ecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCC-CCCCCCCCCCCccEEEEEEEeeeCC-CCCCcEEEE
Q 008267 446 HSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFD-GDESNTLNEPSSEFELFAVVTHTGK-LDAGHYVTY 523 (572)
Q Consensus 446 ~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~ay 523 (572)
++. +...|+++.|.||..|||.+|+................. .+...........|+|+|||+|.|+ +++|||+||
T Consensus 111 ~~~--~~~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~ 188 (241)
T cd02670 111 KTE--GKAQKMFKKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAF 188 (241)
T ss_pred cCC--CcceeCCcEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEE
Confidence 986 667899999999999999999876421100000000000 0000112234578999999999998 999999999
Q ss_pred EEeC-------------CcEEEEcCcceeeeCcc------cccCCceeEEEEE
Q 008267 524 LRLS-------------NKWYKCDDAWITEVNEN------TVRAAQGYMMFYV 557 (572)
Q Consensus 524 vr~~-------------~~W~~~dD~~V~~v~~~------~v~~~~aYlLfY~ 557 (572)
+|.. +.|++|||..|+.+... .+....||||||+
T Consensus 189 vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 189 VRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred EECCcccccccccCCCCCeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 9964 68999999998876532 5678899999996
No 36
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=313.79 Aligned_cols=311 Identities=28% Similarity=0.478 Sum_probs=245.1
Q ss_pred CCcccccccCCchhhHH--HHHHHHhCChhHHHHHhcCCCcccccccCC-CCcccHHHHHHHHHHHHHcCC--CCccChH
Q 008267 195 PRGLRGLNNLGNTCFMN--SVLQALFHTPPLRNYFLSDRHNRYYCQSKN-GVRLCLACDLDTMFSAIFCGD--RMPYSPA 269 (572)
Q Consensus 195 ~~g~~GL~NlGNTCY~N--SvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~l~~~~--~~~i~p~ 269 (572)
....-|..|.+++|+-| +|.|.+.....++...+..... .... ....-+...+..++....... ...+.|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~ 304 (587)
T KOG1864|consen 229 NERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTS----LKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPT 304 (587)
T ss_pred cccccCccccCccccccchhhHHHHHhhhhhcccccchhhc----ccchhhhhHHHHHHhhhhccchhhhcccccccCcc
Confidence 34578999999999999 9999999988888554432211 1100 001112222333333322221 2347899
Q ss_pred HHHHHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCC----------CCC-CC------------Ccccccccc
Q 008267 270 KFLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKP----------RSQ-GN------------GDCCIAHRV 326 (572)
Q Consensus 270 ~~l~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~----------~~~-~~------------~~~~~i~~~ 326 (572)
.|+..+++....|..+.|||||||+.++++.+.+.+....... ... .. ....+++.+
T Consensus 305 ~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~l 384 (587)
T KOG1864|consen 305 RFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKL 384 (587)
T ss_pred hhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHh
Confidence 9999999999999999999999999999999988644322100 000 00 122688999
Q ss_pred cceEEeeEEEeCcCCCeeeeeeCCeeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccc
Q 008267 327 FSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPER 406 (572)
Q Consensus 327 F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~ 406 (572)
|.|++..+..|.+|...+...+.|.|++++++... ..++..||..|..+|.
T Consensus 385 f~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de-----------------------------~~si~~~l~~~~~~e~ 435 (587)
T KOG1864|consen 385 FQGILTNETRCLSCETITSRDEGFLDLSVAVEIDE-----------------------------NTSITNLLKSFSSTET 435 (587)
T ss_pred hcCeeeeeeeeccccccccccccccccceeccccc-----------------------------cccHHHHHHHhcchhh
Confidence 99999999999999999999999999999998532 4699999999999999
Q ss_pred cCCCCccccccccccceeEEEEEeecCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCcc
Q 008267 407 LGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFF 486 (572)
Q Consensus 407 l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~ 486 (572)
+.|+++|.|++|...++|.+.+.++++|.+|+||||||.++.......|+...|.||..|.+.......
T Consensus 436 l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~----------- 504 (587)
T KOG1864|consen 436 LSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDD----------- 504 (587)
T ss_pred ccCCCcccccccCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccceeeccccccc-----------
Confidence 999999999999999999999999999999999999999997566778999999999999886544321
Q ss_pred CCCCCCCCCCCCCCccEEEEEEEeeeCC-CCCCcEEEEEEeCCc-EEEEcCcceeeeCcccccCC---ceeEEEEEEe
Q 008267 487 PFDGDESNTLNEPSSEFELFAVVTHTGK-LDAGHYVTYLRLSNK-WYKCDDAWITEVNENTVRAA---QGYMMFYVQK 559 (572)
Q Consensus 487 ~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~ayvr~~~~-W~~~dD~~V~~v~~~~v~~~---~aYlLfY~r~ 559 (572)
.....+|+|+|||+|.|. ++.|||+||+|..+. |++|||..|+.++.++|... .+|++||...
T Consensus 505 ----------~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~ 572 (587)
T KOG1864|consen 505 ----------NNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYVQ 572 (587)
T ss_pred ----------cCccceeeEEEEEEeccCCCCCcceEEEEeeCCCCceecccccccccCcchhhhccCCCccceeeeEE
Confidence 112468999999999998 999999999998776 99999999999999888654 6677777664
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-30 Score=258.30 Aligned_cols=316 Identities=21% Similarity=0.257 Sum_probs=224.7
Q ss_pred cccccCCchhhHHHHHHHHhCChhHHHHHhcCC----CcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHH
Q 008267 199 RGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDR----HNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYS 274 (572)
Q Consensus 199 ~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~----~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~ 274 (572)
+|+.|+|||||||+.+|+|...|+++..+.... .....+. ..-+..++..+|+.+... .++.|..++..
T Consensus 106 ~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~-----a~~i~~~mR~~f~~~~~~--~~v~pi~llqt 178 (473)
T KOG1872|consen 106 VGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWER-----RRRISIETRTCFRPLCEK--GAVAPINLLQT 178 (473)
T ss_pred ccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhh-----hhhHHHHHHHHHHhhhcc--CCcchHHHHHH
Confidence 499999999999999999999999988765422 1111111 234777889999999877 78999999999
Q ss_pred HHHhcCCCcc------cccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeee--
Q 008267 275 WWRHASNLAS------YEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTT-- 346 (572)
Q Consensus 275 l~~~~~~f~~------~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~-- 346 (572)
+.+..|.|.- +.||||.|.+..++-.+++.+......+ .....+...|++++..+..|..-......
T Consensus 179 l~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~-----~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~ 253 (473)
T KOG1872|consen 179 LSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP-----CLEAEAAAGFGAEFSTTMSCSEGEDEGGGAG 253 (473)
T ss_pred HHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc-----chhHHHHHhhccccccceeeccCcccccccc
Confidence 9888888765 8999999999999999998654332221 11145788899999999999887666544
Q ss_pred eeCCeeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEE
Q 008267 347 FDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLK 426 (572)
Q Consensus 347 ~e~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k 426 (572)
.|.|..|+.-+-.... .+...|..=+..+.- -..+.-|......|
T Consensus 254 ~E~~~~L~c~i~~~~~------------------------------~~k~Gl~~~~~e~~~-----K~s~~lgr~a~y~k 298 (473)
T KOG1872|consen 254 RELVDQLKCIINKTVH------------------------------DMRFGLKSGLSEEIQ-----KISSILGRPAAYQK 298 (473)
T ss_pred cccccccceEEeeeec------------------------------hhhhhhhhhhhhhhh-----ccCcccCCChHHHH
Confidence 5677777766654321 111122211111110 01111122233367
Q ss_pred EEEeecCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccc--------------cCCCccCCCCCC
Q 008267 427 QMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSR--------------FGNRFFPFDGDE 492 (572)
Q Consensus 427 ~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~--------------~~~~~~~~~~~~ 492 (572)
.+.|.+||.+|+|+..||.+....+...|+-..|.||..||.-++++.+...+. .+....+.....
T Consensus 299 ~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~ 378 (473)
T KOG1872|consen 299 VMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGA 378 (473)
T ss_pred HhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCc
Confidence 888999999999999999999877888899999999999999999987762110 000000000000
Q ss_pred C--------------CCCCCC-CccEEEEEEEeeeCC-CCCCcEEEEEEe-CCcEEEEcCcceeeeCcccccC-------
Q 008267 493 S--------------NTLNEP-SSEFELFAVVTHTGK-LDAGHYVTYLRL-SNKWYKCDDAWITEVNENTVRA------- 548 (572)
Q Consensus 493 ~--------------~~~~~~-~~~Y~L~avV~H~G~-~~~GHY~ayvr~-~~~W~~~dD~~V~~v~~~~v~~------- 548 (572)
+ +..... ...|+|.|||.|.|. ..+|||++++|. .+.|++|||..|+.+..+.+..
T Consensus 379 ~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~ 458 (473)
T KOG1872|consen 379 QERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDW 458 (473)
T ss_pred CcccccccccchhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCcc
Confidence 0 011112 568999999999998 999999999996 5699999999999999988764
Q ss_pred CceeEEEEEEecc
Q 008267 549 AQGYMMFYVQKML 561 (572)
Q Consensus 549 ~~aYlLfY~r~~~ 561 (572)
..||+|+|.-+.+
T Consensus 459 ~~ayvllyk~~~l 471 (473)
T KOG1872|consen 459 HSAYVLLYKARVL 471 (473)
T ss_pred chhhheeeccccc
Confidence 3889999987655
No 38
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.7e-30 Score=245.02 Aligned_cols=309 Identities=25% Similarity=0.363 Sum_probs=221.3
Q ss_pred ccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCC---------------
Q 008267 198 LRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGD--------------- 262 (572)
Q Consensus 198 ~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--------------- 262 (572)
-+|+.|-||-|||||+||+|..+++|.+.+-...... .... .....++.++..+...+.+..
T Consensus 28 Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~--~~~~-~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~ 104 (420)
T KOG1871|consen 28 PRGSINKCNICFMNSILQALLYCSPFYNLLELIKRAD--GTVK-EGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEH 104 (420)
T ss_pred CccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhc--Ccee-cccchhHHHHHHHHhhccccchhhhhhhccCCcccc
Confidence 4799999999999999999999999998774322110 0000 112334444444444332110
Q ss_pred -------------CCccChHHHHHHHHHh--cCCCcccccCchHHHHHHHHHHHHHHhhhccCCCC--------------
Q 008267 263 -------------RMPYSPAKFLYSWWRH--ASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPR-------------- 313 (572)
Q Consensus 263 -------------~~~i~p~~~l~~l~~~--~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~-------------- 313 (572)
...+-|..+...+|.. ......|.|.||.|||.++||.||+++-+......
T Consensus 105 ~~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~ 184 (420)
T KOG1871|consen 105 VVEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINN 184 (420)
T ss_pred ccchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccccc
Confidence 0112233344444432 22345689999999999999999998643221100
Q ss_pred -C--C----------------------------CCC-cccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeeccCCCC
Q 008267 314 -S--Q----------------------------GNG-DCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQ 361 (572)
Q Consensus 314 -~--~----------------------------~~~-~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~~~~ 361 (572)
+ . ... ....++++|+|++++.+.-.. .+++.+.+||..|.|+|....
T Consensus 185 ~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~ 263 (420)
T KOG1871|consen 185 GNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEK 263 (420)
T ss_pred cccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeeccc
Confidence 0 0 000 116789999999999888655 456689999999999997543
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEEEE
Q 008267 362 GSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHI 441 (572)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~l 441 (572)
..+++++|..+...|.+.+ +-.+-+....+.+++.+.+||++|++|+
T Consensus 264 -----------------------------i~sv~~ales~~~re~lp~----~st~s~~eV~~s~q~~leklp~vlilhl 310 (420)
T KOG1871|consen 264 -----------------------------IHSVQDALESLVARESLPG----YSTKSGQEVEASSQTTLEKLPPVLILHL 310 (420)
T ss_pred -----------------------------cCCHHHHhhccChhhcccc----eecCCCCeechhhhhhHhhcchhhhhhh
Confidence 5689999999999999973 3344666678899999999999999999
Q ss_pred EEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCC-CCCCcE
Q 008267 442 KRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGK-LDAGHY 520 (572)
Q Consensus 442 kRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY 520 (572)
+||.+.. .+...|+...+++|-.|.+..-+-..-.+.+ .......|+|.|||.|.|+ ...|||
T Consensus 311 krF~ye~-tgg~~k~~K~i~~~~~l~i~~~~~s~gvk~~---------------~~~~~~~yks~~vvyhtgtsatvghY 374 (420)
T KOG1871|consen 311 KRFVYEK-TGGARKLGKKIEYPWTLKISKNCFSQGLKIR---------------ILIATRPYKSLAVVYHTGTSATVGHY 374 (420)
T ss_pred hHHHHHh-ccchhhhchhhhccceeeechhhhccccchh---------------hhccccccceEEEEEecccccccCce
Confidence 9999884 5778899999999988877544321110000 1123457999999999999 999999
Q ss_pred EEEEEe--CCcEEEEcCcceeeeCcccccCC----ceeEEEEEEe
Q 008267 521 VTYLRL--SNKWYKCDDAWITEVNENTVRAA----QGYMMFYVQK 559 (572)
Q Consensus 521 ~ayvr~--~~~W~~~dD~~V~~v~~~~v~~~----~aYlLfY~r~ 559 (572)
+.-+-+ -+.|+++||..|..+..++|... +||+|+|++.
T Consensus 375 l~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~ 419 (420)
T KOG1871|consen 375 LEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEA 419 (420)
T ss_pred EEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeeec
Confidence 998865 57999999999999999999865 7899999875
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.83 E-value=4.3e-20 Score=194.21 Aligned_cols=323 Identities=18% Similarity=0.253 Sum_probs=216.2
Q ss_pred cccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHHHH
Q 008267 197 GLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWW 276 (572)
Q Consensus 197 g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~ 276 (572)
-+.||.--+-+-|-||+||+|+.+|++|.+++.. .|.. ..|++|+|.-||.+|......+.....|+.++.
T Consensus 498 ~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H-----~C~~----e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf~ 568 (1118)
T KOG1275|consen 498 TYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRH-----ICTK----EFCLLCELGFLFTMLDSSTGDPCQANNFLRAFR 568 (1118)
T ss_pred eeeccCCCCchHHHHHHHHHHHhccHHHHHHHcC-----ccch----hHHHHHHHHHHHHHHhhhcCCccchhHHHHHHh
Confidence 3668888888889999999999999999999875 3554 789999999999999988777888899998876
Q ss_pred HhcCCCcc-----c-----------ccCchHHHHHHHHHHHHH--HhhhccCCC----CCCCCCcccccccccceEEeeE
Q 008267 277 RHASNLAS-----Y-----------EQQDAHEFFISMLDGIHE--KVEKDQHKP----RSQGNGDCCIAHRVFSGILRSD 334 (572)
Q Consensus 277 ~~~~~f~~-----~-----------~QqDA~Efl~~lLd~L~~--~~~~~~~~~----~~~~~~~~~~i~~~F~g~l~s~ 334 (572)
.....-+. . --|||..|.......... +........ .....+....+.+.|.-+++..
T Consensus 569 t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e~~ 648 (1118)
T KOG1275|consen 569 TNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIEKS 648 (1118)
T ss_pred hChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHHHHh
Confidence 43221110 0 123333332222211111 000000000 0001111246889999999999
Q ss_pred EEeCcCCCeeeeeeCCeeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccc
Q 008267 335 VMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFF 414 (572)
Q Consensus 335 i~C~~C~~~s~~~e~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~ 414 (572)
..|..|+..+.+......+.|..|...... .......+.+.|++-...+.-. .-.
T Consensus 649 ~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id----------------------~~~~~~~F~~iL~R~l~l~kn~---~~~ 703 (1118)
T KOG1275|consen 649 LRCGECGDEKQKSKSLLRKVLSYPNVLLID----------------------TLAKSNNFVEILKRSLSLFKNK---QAW 703 (1118)
T ss_pred hhcccccchhhhhhhhhheeecCCCccchh----------------------hcccccchHHHhhhhhhccccc---ccc
Confidence 999999999888777778888887643110 0001234555565544333211 268
Q ss_pred cccccccceeEEEEEeecCCceEEEEEEEeEecCCCcccc--ccceeeecCCCCCCccccchhhhccccCCCccCCCCCC
Q 008267 415 CQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSR--KVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDE 492 (572)
Q Consensus 415 C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~--Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~ 492 (572)
|+.|++.+.......+..+|.+|.|...-+.+...++-.+ |.-..|.+|..+.|..--......+...+. .....
T Consensus 704 C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~---~~~~~ 780 (1118)
T KOG1275|consen 704 CETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDL---DVSPL 780 (1118)
T ss_pred cccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccc---cCCCC
Confidence 9999999999999999999999999998887765444333 456778899888776543222211111110 00000
Q ss_pred CCCCCCCCccEEEEEEEeeeCC-CCCCcEEEEEEe----------CCcEEEEcCcceeeeCcccccC-----CceeEEEE
Q 008267 493 SNTLNEPSSEFELFAVVTHTGK-LDAGHYVTYLRL----------SNKWYKCDDAWITEVNENTVRA-----AQGYMMFY 556 (572)
Q Consensus 493 ~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~ayvr~----------~~~W~~~dD~~V~~v~~~~v~~-----~~aYlLfY 556 (572)
..-......+|+|.|+|+|.|. -+.+|.+++||. +++||.|||-.|.+++++|.+. ..+-||+|
T Consensus 781 ~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 781 PDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred ccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 0112234479999999999999 799999999983 3699999999999999988754 47899999
No 40
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=99.77 E-value=2.4e-19 Score=134.23 Aligned_cols=63 Identities=33% Similarity=0.807 Sum_probs=52.8
Q ss_pred ccCCCCCCCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCceeeccCCceeeCCc
Q 008267 66 CGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRD 134 (572)
Q Consensus 66 C~~C~~~~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~~~C~~c~~~v~~~~ 134 (572)
|++|+.. ..++|+||+||++||+ ++.++||..|+ ++++|+|+|++.++.||||.|++||+|++
T Consensus 1 C~~C~~~-~~~lw~CL~Cg~~~C~-~~~~~Ha~~H~----~~~~H~l~v~~~~~~i~C~~C~~~v~~~~ 63 (63)
T PF02148_consen 1 CSVCGST-NSNLWLCLTCGYVGCG-RYSNGHALKHY----KETGHPLAVSLSTGSIWCYACDDYVYDPE 63 (63)
T ss_dssp -SSSHTC-SSSEEEETTTS-EEET-TTSTSHHHHHH----HHHT--EEEETTTTCEEETTTTEEEESTT
T ss_pred CCCCCCc-CCceEEeCCCCccccc-CCcCcHHHHhh----cccCCeEEEECCCCeEEEcCCCcEEeCCC
Confidence 7788533 5899999999999999 66679999999 78889999999999999999999999874
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=99.23 E-value=3.2e-12 Score=126.23 Aligned_cols=62 Identities=23% Similarity=0.472 Sum_probs=57.7
Q ss_pred CCcccCCCCCCCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCceeeccCCceee
Q 008267 63 VPRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVY 131 (572)
Q Consensus 63 ~~~C~~C~~~~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~~~C~~c~~~v~ 131 (572)
...|..|+ ...+||+||.||++||| ++..+||..|| ++++|+++++|++..||-|+-|.||.
T Consensus 228 ~~~c~~c~--~~~~LwicliCg~vgcg-rY~eghA~rHw----eet~H~yalel~tqrVWDYAGDnYVh 289 (493)
T KOG0804|consen 228 SSLCLACG--CTEDLWICLICGNVGCG-RYKEGHARRHW----EETGHCYALELETQRVWDYAGDNYVH 289 (493)
T ss_pred hhhhhhhc--ccccEEEEEEccceecc-cccchhHHHHH----HhhcceEEEeecceeeeecccchhhh
Confidence 46788887 56899999999999999 89999999999 89999999999999999999999995
No 42
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=99.09 E-value=9.7e-11 Score=83.58 Aligned_cols=49 Identities=29% Similarity=0.691 Sum_probs=42.4
Q ss_pred cccCCCCCCCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCc
Q 008267 65 RCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAE 120 (572)
Q Consensus 65 ~C~~C~~~~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~ 120 (572)
+|..|+ ...++|+||+|+++||+ +...+|+..|+ .+++|++++++.++.
T Consensus 1 ~C~~C~--~~~~l~~CL~C~~~~c~-~~~~~h~~~H~----~~t~H~~~~~~~~~~ 49 (50)
T smart00290 1 RCSVCG--TIENLWLCLTCGQVGCG-RYQLGHALEHF----EETGHPLVVKLGTQR 49 (50)
T ss_pred CcccCC--CcCCeEEecCCCCcccC-CCCCcHHHHHh----hhhCCCEEEEccccc
Confidence 599996 34579999999999999 56678999999 789999999998764
No 43
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.66 E-value=6.7e-07 Score=83.27 Aligned_cols=101 Identities=21% Similarity=0.413 Sum_probs=66.7
Q ss_pred cccccccccceeEEEEEeecCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCC
Q 008267 413 FFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDE 492 (572)
Q Consensus 413 ~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~ 492 (572)
..|.+|+.+.. .+++.+.++|+|+.+|+- . + +|.. |+..|--
T Consensus 171 ~pCn~C~~ksQ-~rkMvlekv~~vfmLHFV---e----G----------LP~n-dl~~ysF------------------- 212 (275)
T PF15499_consen 171 GPCNSCNSKSQ-RRKMVLEKVPPVFMLHFV---E----G----------LPHN-DLQHYSF------------------- 212 (275)
T ss_pred CCCcccCChHH-hHhhhhhcCchhhhhhhh---c----c----------CCcc-CCCccce-------------------
Confidence 56999998653 677889999999999954 2 2 2222 2222211
Q ss_pred CCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEe-CCcEEEEcCcceeee---CcccccCCceeEEEEE
Q 008267 493 SNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRL-SNKWYKCDDAWITEV---NENTVRAAQGYMMFYV 557 (572)
Q Consensus 493 ~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~-~~~W~~~dD~~V~~v---~~~~v~~~~aYlLfY~ 557 (572)
.-....|++.+||-+.-. --|+++++++ +|.|.+|||-+=-.. ..-+|..++--|+|++
T Consensus 213 ----~feg~~Y~Vt~VIQY~~~--~~HFvtWi~~~dGsWLecDDLkgp~~~~h~~~~vPasEiHIV~WE 275 (275)
T PF15499_consen 213 ----HFEGCLYQVTSVIQYQAN--LNHFVTWIRDSDGSWLECDDLKGPCCWRHKRFEVPASEIHIVIWE 275 (275)
T ss_pred ----eecCeeEEEEEEEEEecc--CceeEEEEEcCCCCeEeeccCCCcchhccCCCCCChhHcEEEEeC
Confidence 123457999999999865 3499999996 789999999763221 1123444455565553
No 44
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00015 Score=78.23 Aligned_cols=106 Identities=21% Similarity=0.308 Sum_probs=60.3
Q ss_pred cccCCchhhHHHHHHHHhCChhHHHHHhcCC---Cc-ccccccCCCCcccHHHHHHHHHHHH--HcCC-----CCccChH
Q 008267 201 LNNLGNTCFMNSVLQALFHTPPLRNYFLSDR---HN-RYYCQSKNGVRLCLACDLDTMFSAI--FCGD-----RMPYSPA 269 (572)
Q Consensus 201 L~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~---~~-~~~~~~~~~~~~~l~~~l~~l~~~l--~~~~-----~~~i~p~ 269 (572)
|.|.||+||.||+||+|..+|+|+-.+.... .+ ...+...........+....+-..+ .... ....+-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 9999999999999999999999987764321 10 0001000001111112221111111 1111 1123334
Q ss_pred HHHHHH---HHhcCCCcccccCchHHHHHHHHHHHHHHhh
Q 008267 270 KFLYSW---WRHASNLASYEQQDAHEFFISMLDGIHEKVE 306 (572)
Q Consensus 270 ~~l~~l---~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~ 306 (572)
.+...+ .+....|....|+||++|+..++-.+...+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~ 153 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMG 153 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhcc
Confidence 444443 3445568889999999999998888876543
No 45
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=97.09 E-value=0.013 Score=58.36 Aligned_cols=100 Identities=21% Similarity=0.369 Sum_probs=59.0
Q ss_pred CcccccccCCchhhHHHHHHHHhCChh-HHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHH
Q 008267 196 RGLRGLNNLGNTCFMNSVLQALFHTPP-LRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYS 274 (572)
Q Consensus 196 ~g~~GL~NlGNTCY~NSvLQ~L~~~p~-fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~ 274 (572)
.|++=|.=.-|+||+||++-+|-++.. |+. -.++.++.++..| +|..|...
T Consensus 100 ~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~-----------------------~~l~~aw~~f~~G-----~~~~fVa~ 151 (320)
T PF08715_consen 100 NGFRVLKQSDNNCWVNAACLQLQALKIKFKS-----------------------PGLDEAWNEFKAG-----DPAPFVAW 151 (320)
T ss_dssp TTEEEE---TTTHHHHHHHHHHTTST--BSS-----------------------HHHHHHHHHHHTT-------HHHHHH
T ss_pred CCEEEEEecCCCcHHHHHHHHHHhcCCccCC-----------------------HHHHHHHHHHhCC-----ChHHHHHH
Confidence 356667777899999999987754432 211 1456677777777 57777777
Q ss_pred HHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeee
Q 008267 275 WWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTT 346 (572)
Q Consensus 275 l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~ 346 (572)
+... .....++.-||+++|..||+.+... ....+.....|-.||.....
T Consensus 152 ~Ya~-~~~~~G~~gDa~~~L~~ll~~~~~~----------------------~~~~~~~~~~~c~CG~k~~~ 200 (320)
T PF08715_consen 152 CYAS-TNAKKGDPGDAEYVLSKLLKDADLD----------------------YSVTMTKLEVCCGCGVKQEE 200 (320)
T ss_dssp HHHH-TT--TTS---HHHHHHHHHTTB-TT----------------------T-EEEEEEEEECTTEEEEEE
T ss_pred HHHH-cCCCCCCCcCHHHHHHHHHHhcccc----------------------ceEEEEEeeeeccCCcceee
Confidence 6543 3556688999999999998776542 22344555678899866544
No 46
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=0.013 Score=63.76 Aligned_cols=217 Identities=14% Similarity=0.249 Sum_probs=121.6
Q ss_pred ccCchHHHHHHHHHHHHHHhhhccCCCCC-----------CCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeee
Q 008267 286 EQQDAHEFFISMLDGIHEKVEKDQHKPRS-----------QGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFS 354 (572)
Q Consensus 286 ~QqDA~Efl~~lLd~L~~~~~~~~~~~~~-----------~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~ls 354 (572)
+..++.++|.-++..|++........... ......++++++|+.....+..|..|+......+. ...-
T Consensus 548 ~~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peq-sS~~ 626 (806)
T KOG1887|consen 548 HEGVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQ-SSYG 626 (806)
T ss_pred hhhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcch-hhhh
Confidence 44577888999988888765433111000 01111267888999999999999999876533211 1111
Q ss_pred eccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccc----cccccceeEEEEEe
Q 008267 355 LDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQ----QCQVRQESLKQMSI 430 (572)
Q Consensus 355 L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~----~C~~~~~~~k~~~i 430 (572)
+-+...... .+....+..++++.|.. .+.+.. ..|+ .||+.. .....|
T Consensus 627 ~~~~a~slr--------------------~~k~a~~n~~f~~ilk~-i~m~~~-----m~cD~~~gGCgk~n--~v~h~i 678 (806)
T KOG1887|consen 627 IVIAADSLR--------------------QLKCAFQNITFEDILKN-IRMNDK-----MLCDKETGGCGKAN--LVHHIL 678 (806)
T ss_pred hhccchhhh--------------------hHHHHhhhhhHHHHHHH-hhhhhh-----hcccccCCCCcchh--hhhhhc
Confidence 111110000 00011134677777776 444432 3344 365533 345568
Q ss_pred ecCCceEEEEEEEeEecCCCcccccc--ceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEE
Q 008267 431 RKLPLVSCFHIKRFEHSSVRKMSRKV--DRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAV 508 (572)
Q Consensus 431 ~~lP~vL~i~lkRf~~~~~~~~~~Ki--~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~av 508 (572)
.+.|+|++|.|.. +.+. ..|. .+...+-.++|++..... .......|+|+++
T Consensus 679 s~~P~vftIvlew-Ek~E----Te~eI~~T~~aL~teidis~~y~~---------------------g~ep~t~yrLVSm 732 (806)
T KOG1887|consen 679 SPCPPVFTIVLEW-EKSE----TEKEISETTKALATEIDISRLYRE---------------------GLEPNTKYRLVSM 732 (806)
T ss_pred CCCCCeeEeeeeh-hccc----chHHHHHHHHHHHhhhhHHHHhhh---------------------ccCcCceeEEEEE
Confidence 8999999996552 2111 1111 111223334555432211 1345678999999
Q ss_pred EeeeCCCCCCcEEEEEEeCCcEE--EEcCcceeeeCc-ccccC------CceeEEEEEEe
Q 008267 509 VTHTGKLDAGHYVTYLRLSNKWY--KCDDAWITEVNE-NTVRA------AQGYMMFYVQK 559 (572)
Q Consensus 509 V~H~G~~~~GHY~ayvr~~~~W~--~~dD~~V~~v~~-~~v~~------~~aYlLfY~r~ 559 (572)
|.-... .++|.|+....++|. ..+|..+..+.. .+|.. -.+=||||+.+
T Consensus 733 v~~~e~--~~~~~C~Aye~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e~~vrpeil~ye~~ 790 (806)
T KOG1887|consen 733 VGNHEE--GEEYICFAYEPNRWVSLRHEDSQGEVVGDWKDVVRFCGERKVRPEILFYEAQ 790 (806)
T ss_pred eeeccc--cceEEEeeccCCcchhhHHHHHHhhhccchHHHHHHHhcccccHHHHHHHHH
Confidence 987643 679999999999998 888887766532 33321 24566777653
No 47
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=92.80 E-value=0.058 Score=48.19 Aligned_cols=29 Identities=24% Similarity=0.270 Sum_probs=23.4
Q ss_pred CCCcEEEEEEeCCcEEEEcCcceeeeCcc
Q 008267 516 DAGHYVTYLRLSNKWYKCDDAWITEVNEN 544 (572)
Q Consensus 516 ~~GHY~ayvr~~~~W~~~dD~~V~~v~~~ 544 (572)
..||.+.+.+..+.||.+||+.+...++.
T Consensus 137 g~~Havfa~~ts~gWy~iDDe~~y~~tPd 165 (193)
T PF05408_consen 137 GQEHAVFACVTSDGWYAIDDEDFYPWTPD 165 (193)
T ss_dssp STTEEEEEEEETTCEEEEETTEEEE----
T ss_pred CCcceEEEEEeeCcEEEecCCeeeeCCCC
Confidence 45899999999999999999999987663
No 48
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=89.24 E-value=0.27 Score=43.03 Aligned_cols=60 Identities=22% Similarity=0.508 Sum_probs=32.3
Q ss_pred ccCCCCCCCCCcEEecccCccccCCC--CCCchhhhhccCCCCCCCce-EEEEc----CCCceeeccCCce
Q 008267 66 CGVCGDSSCPRLYACMACAAVSCHVP--PHSSHVAIHATKTSSACSHE-IAVDV----DRAELFCCACRDQ 129 (572)
Q Consensus 66 C~~C~~~~~~~~~~Cl~C~~~~c~~~--~~~~h~~~H~~~~~~~~~H~-~~~~~----~~~~~~C~~c~~~ 129 (572)
|.=|+......+-.|+.|+.-+|-++ ..++|...|.. .+.|. +.+.- +.-.+.||.|+.-
T Consensus 3 C~YCG~~~p~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv----~srh~ev~LH~~s~lgdt~leCy~Cg~~ 69 (152)
T PF09416_consen 3 CAYCGIHDPSCVVKCNTCNKWFCNGRGNTSGSHIVNHLV----RSRHKEVSLHPDSPLGDTVLECYNCGSR 69 (152)
T ss_dssp -TTT----CCCEEEETTTTEEEES--TTSSS-HHHHHHH----HHT---EEE-TTSTT-S-B---TTT---
T ss_pred ccccCCCCcccEeEcCCCCcEeecCCCCCcccHHHHHHH----HccCCceeeCCCCCCCCcEEEEEecCCC
Confidence 88887777888999999999999743 25699999984 44453 44433 3456789999853
No 49
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=86.18 E-value=1 Score=46.85 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=36.8
Q ss_pred CCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEEEEEEeEecCCCccccccceeeecCC
Q 008267 390 GISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPL 464 (572)
Q Consensus 390 ~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~ 464 (572)
+..+++++++.-+-...+ +++..|..++|+..||..+. +...++...+.+|.
T Consensus 499 ~~p~~qqL~e~sf~sS~i---------------------k~~e~pSc~iiqmprfgk~~--km~~~i~pS~~l~V 550 (724)
T KOG3556|consen 499 GHPGFQQLSELSFPSSSI---------------------KSTETPSCQIIQMPRFGKSQ--KMPAAIGPSISLPV 550 (724)
T ss_pred CCchHHHHhhhhcccccc---------------------ccccCcchhheeccccCccc--ccchhcCCceEeec
Confidence 356788877765543333 46788999999999998875 66777766666653
No 50
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=84.65 E-value=1.1 Score=40.27 Aligned_cols=31 Identities=29% Similarity=0.611 Sum_probs=19.5
Q ss_pred cccccccCCchhhHHHHHHHHh--CChhHHHHH
Q 008267 197 GLRGLNNLGNTCFMNSVLQALF--HTPPLRNYF 227 (572)
Q Consensus 197 g~~GL~NlGNTCY~NSvLQ~L~--~~p~fr~~~ 227 (572)
-++|+.|.+|+|++||++|.+. ..|-|-.++
T Consensus 32 eft~~PN~~dnCWlNaL~QL~~~~d~~~Fd~~Y 64 (193)
T PF05408_consen 32 EFTGLPNNHDNCWLNALLQLFRYVDEPFFDWYY 64 (193)
T ss_dssp EEE----SSSTHHHHHHHHHHHHHT-GTTHHHH
T ss_pred EEecCCCCCCChHHHHHHHHHHHcCcccchhhc
Confidence 4679999999999999999874 345444444
No 51
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=76.00 E-value=0.95 Score=32.60 Aligned_cols=23 Identities=26% Similarity=0.661 Sum_probs=19.0
Q ss_pred CCcccCCCCCCCCCcEEecccCccc
Q 008267 63 VPRCGVCGDSSCPRLYACMACAAVS 87 (572)
Q Consensus 63 ~~~C~~C~~~~~~~~~~Cl~C~~~~ 87 (572)
++||..|. ...+.|.|-.||+.|
T Consensus 36 I~RC~~CR--k~~~~Y~CP~CGF~G 58 (59)
T PRK14890 36 IYRCEKCR--KQSNPYTCPKCGFEG 58 (59)
T ss_pred EeechhHH--hcCCceECCCCCCcC
Confidence 57888885 567899999999876
No 52
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=73.49 E-value=1.2 Score=32.03 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=19.3
Q ss_pred CCCcccCCCCCCCCCcEEecccCccc
Q 008267 62 EVPRCGVCGDSSCPRLYACMACAAVS 87 (572)
Q Consensus 62 ~~~~C~~C~~~~~~~~~~Cl~C~~~~ 87 (572)
.++||..|. ...+.|.|-.||+.|
T Consensus 37 ~I~Rc~~CR--k~g~~Y~Cp~CGF~G 60 (61)
T COG2888 37 EIYRCAKCR--KLGNPYRCPKCGFEG 60 (61)
T ss_pred eeehhhhHH--HcCCceECCCcCccC
Confidence 357888885 568899999999876
No 53
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=66.00 E-value=1.4 Score=45.90 Aligned_cols=49 Identities=18% Similarity=0.408 Sum_probs=35.5
Q ss_pred CcccCCCCCCCCC--cEEecccCccccCCCCCCchh-hhhccCCCCCCCceEEEEcC
Q 008267 64 PRCGVCGDSSCPR--LYACMACAAVSCHVPPHSSHV-AIHATKTSSACSHEIAVDVD 117 (572)
Q Consensus 64 ~~C~~C~~~~~~~--~~~Cl~C~~~~c~~~~~~~h~-~~H~~~~~~~~~H~~~~~~~ 117 (572)
-.|.-|..+.... +-+||.|+..+|+ +...-|. +.|+ ..+-|++.+-+.
T Consensus 23 eeC~yCf~S~~~e~si~vClnCfqs~C~-~h~~~H~~~~~~----c~tvh~i~~tia 74 (749)
T COG5207 23 EECCYCFRSIGDEHSISVCLNCFQSFCE-KHRGIHLGTKSG----CRTVHDIKETIA 74 (749)
T ss_pred hhhheeeccCCCCcceehHHHHhHhhhh-hccceeecchhh----hhhhhhhhhhhh
Confidence 4588886433333 8899999999999 5555666 5777 778888876653
No 54
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=63.18 E-value=8.9 Score=20.71 Aligned_cols=15 Identities=20% Similarity=0.632 Sum_probs=12.1
Q ss_pred EEEEeCCcEEEEcCc
Q 008267 522 TYLRLSNKWYKCDDA 536 (572)
Q Consensus 522 ayvr~~~~W~~~dD~ 536 (572)
.+++.++.||.|++.
T Consensus 2 ~W~~~~~~wYy~~~~ 16 (19)
T PF01473_consen 2 GWVQDNGNWYYFDSD 16 (19)
T ss_dssp EEEEETTEEEEETTT
T ss_pred cCEEECCEEEEeCCC
Confidence 367788999999875
No 55
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=62.06 E-value=7.6 Score=28.44 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=29.1
Q ss_pred CccccccccccceeEEEEEe--ecCCceEEEEEEEeEec
Q 008267 411 QKFFCQQCQVRQESLKQMSI--RKLPLVSCFHIKRFEHS 447 (572)
Q Consensus 411 ~~~~C~~C~~~~~~~k~~~i--~~lP~vL~i~lkRf~~~ 447 (572)
+.+.|++|+...-..+++.. ..+.+++=||.++|..-
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~i 41 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIVI 41 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEEE
Confidence 34679999988766676665 47899999999999754
No 56
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=60.87 E-value=4.6 Score=24.04 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=16.9
Q ss_pred cccCCCCCCCCCcEEecccCccc
Q 008267 65 RCGVCGDSSCPRLYACMACAAVS 87 (572)
Q Consensus 65 ~C~~C~~~~~~~~~~Cl~C~~~~ 87 (572)
.|.+|+..-....-.|-.||+.+
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 37888755556677899999874
No 57
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=54.93 E-value=18 Score=32.38 Aligned_cols=31 Identities=16% Similarity=0.531 Sum_probs=25.8
Q ss_pred EEEEEeeeCCCCCCcEEEEEEeCCcEEEEcCccee
Q 008267 505 LFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWIT 539 (572)
Q Consensus 505 L~avV~H~G~~~~GHY~ayvr~~~~W~~~dD~~V~ 539 (572)
..|+|++.+. |+++..|-++.||-+|=..-.
T Consensus 99 ~~gfI~N~~~----HWf~iRki~~~wyNLDS~l~~ 129 (157)
T PF02099_consen 99 EFGFICNLSR----HWFAIRKIGGQWYNLDSKLKE 129 (157)
T ss_dssp SSEEEEECTT----EEEEEEEETTEEEEECTTTSS
T ss_pred ceEEEeccCc----ceEEEEeeCCeeEeccCCCCC
Confidence 3689999666 999999999999999865544
No 58
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.68 E-value=2.6 Score=40.27 Aligned_cols=48 Identities=25% Similarity=0.665 Sum_probs=34.4
Q ss_pred CcccCCCCCCCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCc-eeeccCCceeeCC
Q 008267 64 PRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAE-LFCCACRDQVYDR 133 (572)
Q Consensus 64 ~~C~~C~~~~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~-~~C~~c~~~v~~~ 133 (572)
-+|.-|. ...+.-.|..|||++|+ |++........ -+|-.|...|+..
T Consensus 216 ~kC~lC~--e~~~~ps~t~CgHlFC~--------------------~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 216 YKCFLCL--EEPEVPSCTPCGHLFCL--------------------SCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred cceeeee--cccCCcccccccchhhH--------------------HHHHHHHHhhccccCchhhhhccch
Confidence 4699995 55778899999999999 34444333333 3588888888743
No 59
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=47.96 E-value=12 Score=40.68 Aligned_cols=47 Identities=28% Similarity=0.482 Sum_probs=36.7
Q ss_pred CcccCCCCC--CCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCC
Q 008267 64 PRCGVCGDS--SCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRA 119 (572)
Q Consensus 64 ~~C~~C~~~--~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~ 119 (572)
-.|.-|-.+ ...-|++||.|-.-.|. .|...|+ .+++|.+++.+...
T Consensus 25 deC~ycf~sp~~e~glyicl~~f~afg~-----~~v~~~f----~~tg~~~yl~i~r~ 73 (763)
T KOG0944|consen 25 DECAYCFDSPESEGGLYICLNCFLAFGR-----EHVEEYF----RKTGHSVYLHIARV 73 (763)
T ss_pred hhceeeccCCCCCCCEEeehhhhhhhhh-----HHHHHHH----hhcCceEEEEeccc
Confidence 457777532 23459999999988776 7999999 89999999999543
No 60
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=43.23 E-value=15 Score=21.14 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=14.3
Q ss_pred cccCCCCCCCCCcEEecccCc
Q 008267 65 RCGVCGDSSCPRLYACMACAA 85 (572)
Q Consensus 65 ~C~~C~~~~~~~~~~Cl~C~~ 85 (572)
+|..|+.......-.|..||.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 377777555556667888875
No 61
>PF14369 zf-RING_3: zinc-finger
Probab=42.56 E-value=13 Score=23.98 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=10.3
Q ss_pred ceeeccCCceee
Q 008267 120 ELFCCACRDQVY 131 (572)
Q Consensus 120 ~~~C~~c~~~v~ 131 (572)
.-|||.|+..|.
T Consensus 2 ~ywCh~C~~~V~ 13 (35)
T PF14369_consen 2 RYWCHQCNRFVR 13 (35)
T ss_pred CEeCccCCCEeE
Confidence 469999999986
No 62
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=41.78 E-value=17 Score=23.71 Aligned_cols=23 Identities=17% Similarity=0.499 Sum_probs=16.6
Q ss_pred ccCCCCCCCCCcEEecccCccccC
Q 008267 66 CGVCGDSSCPRLYACMACAAVSCH 89 (572)
Q Consensus 66 C~~C~~~~~~~~~~Cl~C~~~~c~ 89 (572)
|..| .....+.++-+.|||++|.
T Consensus 1 C~iC-~~~~~~~~~~~~CGH~fC~ 23 (39)
T PF13923_consen 1 CPIC-LDELRDPVVVTPCGHSFCK 23 (39)
T ss_dssp ETTT-TSB-SSEEEECTTSEEEEH
T ss_pred CCCC-CCcccCcCEECCCCCchhH
Confidence 5567 3455667788999999997
No 63
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=41.51 E-value=13 Score=23.69 Aligned_cols=13 Identities=15% Similarity=0.603 Sum_probs=10.5
Q ss_pred cEEecccCccccC
Q 008267 77 LYACMACAAVSCH 89 (572)
Q Consensus 77 ~~~Cl~C~~~~c~ 89 (572)
.|+|..||++.=+
T Consensus 2 ~~~C~~CG~i~~g 14 (34)
T cd00729 2 VWVCPVCGYIHEG 14 (34)
T ss_pred eEECCCCCCEeEC
Confidence 5999999998644
No 64
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=38.16 E-value=30 Score=37.91 Aligned_cols=65 Identities=22% Similarity=0.437 Sum_probs=45.9
Q ss_pred CCCCcccCCCCCCCCCcEEecccCccccCCC--CCCchhhhhccCCCCCCCceEEE-E----cCCCceeeccCCce
Q 008267 61 SEVPRCGVCGDSSCPRLYACMACAAVSCHVP--PHSSHVAIHATKTSSACSHEIAV-D----VDRAELFCCACRDQ 129 (572)
Q Consensus 61 ~~~~~C~~C~~~~~~~~~~Cl~C~~~~c~~~--~~~~h~~~H~~~~~~~~~H~~~~-~----~~~~~~~C~~c~~~ 129 (572)
.....|.=|+......+--|.+||.-+|-.+ ..++|...|. ..+.|.-+- . ++...+-||.|+.-
T Consensus 58 ~~~~~c~Ycgi~~p~~v~kc~~c~Kwfcn~r~gtsgshIv~hl----vra~hk~v~lh~ds~lget~lecyncg~~ 129 (935)
T KOG1802|consen 58 LPEHACAYCGISEPACVIKCNTCGKWFCNSRGGTSGSHIVNHL----VRAKHKEVSLHKDSPLGETVLECYNCGSR 129 (935)
T ss_pred cchhhhhhccCCCchheeeccccCceeecCCCCCchhHHHHHH----HHhhhheeEeccCCCCCcceEEeeccCcc
Confidence 3345699998766678889999999999743 3458999998 455564332 1 24556789999853
No 65
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=35.51 E-value=36 Score=22.46 Aligned_cols=25 Identities=20% Similarity=0.587 Sum_probs=16.8
Q ss_pred ccCCCCCCCCCcEEecccCccccCC
Q 008267 66 CGVCGDSSCPRLYACMACAAVSCHV 90 (572)
Q Consensus 66 C~~C~~~~~~~~~~Cl~C~~~~c~~ 90 (572)
|..|+.........|-.|+.++|..
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCccccc
Confidence 5567532222257899999999993
No 66
>PF14353 CpXC: CpXC protein
Probab=33.98 E-value=63 Score=27.61 Aligned_cols=12 Identities=25% Similarity=0.706 Sum_probs=9.7
Q ss_pred ccccccccccce
Q 008267 412 KFFCQQCQVRQE 423 (572)
Q Consensus 412 ~~~C~~C~~~~~ 423 (572)
.+.|++||....
T Consensus 38 ~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 38 SFTCPSCGHKFR 49 (128)
T ss_pred EEECCCCCCcee
Confidence 489999998653
No 67
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.73 E-value=21 Score=22.52 Aligned_cols=11 Identities=27% Similarity=0.787 Sum_probs=8.0
Q ss_pred cEEecccCccc
Q 008267 77 LYACMACAAVS 87 (572)
Q Consensus 77 ~~~Cl~C~~~~ 87 (572)
.|+|..||++.
T Consensus 1 ~~~C~~CGy~y 11 (33)
T cd00350 1 KYVCPVCGYIY 11 (33)
T ss_pred CEECCCCCCEE
Confidence 37788888775
No 68
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=33.32 E-value=31 Score=27.13 Aligned_cols=27 Identities=22% Similarity=0.564 Sum_probs=20.8
Q ss_pred CcccCCCCC----CCCCcEEecccCccccCC
Q 008267 64 PRCGVCGDS----SCPRLYACMACAAVSCHV 90 (572)
Q Consensus 64 ~~C~~C~~~----~~~~~~~Cl~C~~~~c~~ 90 (572)
..|..|+.. ...-+|.|-.||+.+-|.
T Consensus 36 ~~Cp~C~~~~VkR~a~GIW~C~kCg~~fAGg 66 (89)
T COG1997 36 HVCPFCGRTTVKRIATGIWKCRKCGAKFAGG 66 (89)
T ss_pred CcCCCCCCcceeeeccCeEEcCCCCCeeccc
Confidence 569999732 134599999999999885
No 69
>PHA00616 hypothetical protein
Probab=31.51 E-value=5.5 Score=27.07 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=16.7
Q ss_pred EEecccCccccCCCCCCchhhhhc
Q 008267 78 YACMACAAVSCHVPPHSSHVAIHA 101 (572)
Q Consensus 78 ~~Cl~C~~~~c~~~~~~~h~~~H~ 101 (572)
+.|+.||.++.-.+....|...|.
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~~h 25 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLSVH 25 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHHhc
Confidence 579999999987544445555554
No 70
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=31.47 E-value=42 Score=24.30 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=18.8
Q ss_pred CCCCcccCCCCCCCCCcEEecccCcc
Q 008267 61 SEVPRCGVCGDSSCPRLYACMACAAV 86 (572)
Q Consensus 61 ~~~~~C~~C~~~~~~~~~~Cl~C~~~ 86 (572)
.....|..|+ .....-.+|..||+.
T Consensus 25 ~~l~~C~~CG-~~~~~H~vC~~CG~Y 49 (57)
T PRK12286 25 PGLVECPNCG-EPKLPHRVCPSCGYY 49 (57)
T ss_pred CcceECCCCC-CccCCeEECCCCCcC
Confidence 3456799996 345677899999975
No 71
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=31.18 E-value=39 Score=24.26 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=18.5
Q ss_pred CCCcccCCCCCCCCCcEEecccCcc
Q 008267 62 EVPRCGVCGDSSCPRLYACMACAAV 86 (572)
Q Consensus 62 ~~~~C~~C~~~~~~~~~~Cl~C~~~ 86 (572)
....|..|+ .....-.+|..||+.
T Consensus 25 ~l~~C~~cG-~~~~~H~vc~~cG~Y 48 (55)
T TIGR01031 25 TLVVCPNCG-EFKLPHRVCPSCGYY 48 (55)
T ss_pred cceECCCCC-CcccCeeECCccCeE
Confidence 446799996 345677899999976
No 72
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=30.79 E-value=1.3e+02 Score=24.35 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=15.0
Q ss_pred cccccccccceeEEEEEeecC
Q 008267 413 FFCQQCQVRQESLKQMSIRKL 433 (572)
Q Consensus 413 ~~C~~C~~~~~~~k~~~i~~l 433 (572)
-.|+.|+.....-.++.+.+.
T Consensus 66 ~~Cp~Cgh~rayF~qlQtRSA 86 (105)
T KOG2906|consen 66 ATCPTCGHERAYFMQLQTRSA 86 (105)
T ss_pred CcCCCCCCCceEEEEeeeccC
Confidence 579999988766666665543
No 73
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=30.63 E-value=38 Score=20.95 Aligned_cols=23 Identities=30% Similarity=0.856 Sum_probs=12.6
Q ss_pred CcccCCCCC---CCCCcEEecccCcc
Q 008267 64 PRCGVCGDS---SCPRLYACMACAAV 86 (572)
Q Consensus 64 ~~C~~C~~~---~~~~~~~Cl~C~~~ 86 (572)
++|..|+.. ....+++|-+||+.
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPECGHE 28 (30)
T ss_dssp ---TTT-----EE-SSSEEETTTTEE
T ss_pred CCCCCCCCcceeccCCEEeCCccccc
Confidence 568888522 13568999999874
No 74
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=30.46 E-value=43 Score=24.92 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=21.1
Q ss_pred cccccccccceeEEEEEe--ecCCceEEEEEEEeEe
Q 008267 413 FFCQQCQVRQESLKQMSI--RKLPLVSCFHIKRFEH 446 (572)
Q Consensus 413 ~~C~~C~~~~~~~k~~~i--~~lP~vL~i~lkRf~~ 446 (572)
|.|++|+...-..++++. ..+-.++=|+.+||..
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~ 36 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT 36 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence 679999987554444443 2345566667777653
No 75
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.40 E-value=27 Score=34.10 Aligned_cols=33 Identities=15% Similarity=0.391 Sum_probs=25.7
Q ss_pred CCcccCCCCCCCCCcEEecccCccccCCCCCCchhhhhcc
Q 008267 63 VPRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHAT 102 (572)
Q Consensus 63 ~~~C~~C~~~~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~ 102 (572)
..+|.-|. .....-.|.-|||++|| .-...|..
T Consensus 239 ~~kC~LCL--e~~~~pSaTpCGHiFCW-----sCI~~w~~ 271 (293)
T KOG0317|consen 239 TRKCSLCL--ENRSNPSATPCGHIFCW-----SCILEWCS 271 (293)
T ss_pred CCceEEEe--cCCCCCCcCcCcchHHH-----HHHHHHHc
Confidence 36899994 34556689999999999 67777873
No 76
>PHA00626 hypothetical protein
Probab=28.93 E-value=37 Score=24.28 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=18.7
Q ss_pred CcccCCCCCCCCCcEEecccCccccC
Q 008267 64 PRCGVCGDSSCPRLYACMACAAVSCH 89 (572)
Q Consensus 64 ~~C~~C~~~~~~~~~~Cl~C~~~~c~ 89 (572)
.+|..|. ..++.|.|-.||+.+--
T Consensus 12 vrcg~cr--~~snrYkCkdCGY~ft~ 35 (59)
T PHA00626 12 AKEKTMR--GWSDDYVCCDCGYNDSK 35 (59)
T ss_pred eeeceec--ccCcceEcCCCCCeech
Confidence 4577774 45799999999999754
No 77
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=27.91 E-value=90 Score=33.88 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=19.6
Q ss_pred CchhhHHHHHHHHhC--ChhHHHHHhc
Q 008267 205 GNTCFMNSVLQALFH--TPPLRNYFLS 229 (572)
Q Consensus 205 GNTCY~NSvLQ~L~~--~p~fr~~~l~ 229 (572)
+.+||+-.||-|||. +|.|-+.|+.
T Consensus 244 ~s~~~IHPIl~ALFg~KlpiLE~~~vy 270 (666)
T PF03292_consen 244 DSTNYIHPILVALFGIKLPILENHFVY 270 (666)
T ss_pred CCcCcccHHHHHHhccchhHHHHHHhh
Confidence 457999999999986 5778777653
No 78
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=27.06 E-value=35 Score=19.86 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=15.5
Q ss_pred CcccCCCCCCCCCcEEecccCc
Q 008267 64 PRCGVCGDSSCPRLYACMACAA 85 (572)
Q Consensus 64 ~~C~~C~~~~~~~~~~Cl~C~~ 85 (572)
|.|..|...+......|..|+.
T Consensus 3 W~C~~C~~~N~~~~~~C~~C~~ 24 (26)
T smart00547 3 WECPACTFLNFASRSKCFACGA 24 (26)
T ss_pred ccCCCCCCcChhhhccccccCC
Confidence 7788886555556667877775
No 79
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=26.87 E-value=39 Score=20.64 Aligned_cols=23 Identities=30% Similarity=0.730 Sum_probs=9.3
Q ss_pred cccCCCCCCCC-CcEEecccCccc
Q 008267 65 RCGVCGDSSCP-RLYACMACAAVS 87 (572)
Q Consensus 65 ~C~~C~~~~~~-~~~~Cl~C~~~~ 87 (572)
.|..|+..... ..|.|.+|.+..
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~l 25 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDL 25 (30)
T ss_dssp --TTTS----S--EEE-TTT----
T ss_pred cCCcCCCcCCCCceEECccCCCcc
Confidence 48888654434 689999998764
No 80
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=26.09 E-value=40 Score=19.89 Aligned_cols=22 Identities=32% Similarity=0.606 Sum_probs=15.2
Q ss_pred CcccCCCCCCCCCcEEecccCc
Q 008267 64 PRCGVCGDSSCPRLYACMACAA 85 (572)
Q Consensus 64 ~~C~~C~~~~~~~~~~Cl~C~~ 85 (572)
..|..|+......--.|-.||.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 4588887544556677888875
No 81
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=26.08 E-value=13 Score=22.79 Aligned_cols=24 Identities=25% Similarity=0.413 Sum_probs=13.5
Q ss_pred CCcccCCCCCCCCCcEEecccCcc
Q 008267 63 VPRCGVCGDSSCPRLYACMACAAV 86 (572)
Q Consensus 63 ~~~C~~C~~~~~~~~~~Cl~C~~~ 86 (572)
.|.|..|...+......|..|+..
T Consensus 4 ~W~C~~C~~~N~~~~~~C~~C~~~ 27 (30)
T PF00641_consen 4 DWKCPSCTFMNPASRSKCVACGAP 27 (30)
T ss_dssp SEEETTTTEEEESSSSB-TTT--B
T ss_pred CccCCCCcCCchHHhhhhhCcCCC
Confidence 377888865444556677777653
No 82
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=25.14 E-value=3.1e+02 Score=22.35 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=25.7
Q ss_pred CCcEEEEcCcceeeeCcccccCCceeEEEEEE
Q 008267 527 SNKWYKCDDAWITEVNENTVRAAQGYMMFYVQ 558 (572)
Q Consensus 527 ~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r 558 (572)
.|+||.+....|.+....--.....|.+.+.+
T Consensus 67 eG~vy~i~~~~V~~a~~~y~~~~~~yeI~f~~ 98 (104)
T cd04474 67 VGKVYYISKGSVKVANKKFNTLKNDYEITFNR 98 (104)
T ss_pred cccEEEEeccEEeeccccCCCCCCcEEEEECC
Confidence 48999999999999887655556788887764
No 83
>COG0333 RpmF Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=24.69 E-value=57 Score=23.61 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=17.9
Q ss_pred CCcccCCCCCCCCCcEEecccCcc
Q 008267 63 VPRCGVCGDSSCPRLYACMACAAV 86 (572)
Q Consensus 63 ~~~C~~C~~~~~~~~~~Cl~C~~~ 86 (572)
...|..|+. ....-.+|+.||+.
T Consensus 27 ~~~c~~cG~-~~l~Hrvc~~cg~Y 49 (57)
T COG0333 27 LSVCPNCGE-YKLPHRVCLKCGYY 49 (57)
T ss_pred ceeccCCCC-cccCceEcCCCCCc
Confidence 467999963 45677899999975
No 84
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=24.31 E-value=60 Score=26.76 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=17.0
Q ss_pred CcccCCCCC---CCCCcEEecccCcc
Q 008267 64 PRCGVCGDS---SCPRLYACMACAAV 86 (572)
Q Consensus 64 ~~C~~C~~~---~~~~~~~Cl~C~~~ 86 (572)
+.|..|... ....+|+|..|++-
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~E 28 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLYE 28 (109)
T ss_pred CcCCcCCCcceEecCCeeECcccccc
Confidence 458888522 14569999999998
No 85
>PRK10220 hypothetical protein; Provisional
Probab=23.71 E-value=64 Score=26.60 Aligned_cols=23 Identities=30% Similarity=0.785 Sum_probs=17.1
Q ss_pred CcccCCCCC---CCCCcEEecccCcc
Q 008267 64 PRCGVCGDS---SCPRLYACMACAAV 86 (572)
Q Consensus 64 ~~C~~C~~~---~~~~~~~Cl~C~~~ 86 (572)
+.|..|... ....+|+|..|++-
T Consensus 4 P~CP~C~seytY~d~~~~vCpeC~hE 29 (111)
T PRK10220 4 PHCPKCNSEYTYEDNGMYICPECAHE 29 (111)
T ss_pred CcCCCCCCcceEcCCCeEECCcccCc
Confidence 458888522 14569999999998
No 86
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=23.51 E-value=12 Score=35.38 Aligned_cols=53 Identities=17% Similarity=0.316 Sum_probs=37.2
Q ss_pred EEEEeeeCCCCCCcEEEEEEeCCcEEEEcCcceeeeCccc--------ccCCceeEEEEEEeccc
Q 008267 506 FAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENT--------VRAAQGYMMFYVQKMLY 562 (572)
Q Consensus 506 ~avV~H~G~~~~GHY~ayvr~~~~W~~~dD~~V~~v~~~~--------v~~~~aYlLfY~r~~~~ 562 (572)
.|+|||.-. ||++..|-+++||.+|--.--+--..+ -+..++|-+|-++-++-
T Consensus 104 rafICnl~e----HWF~iRKfg~qWfnlnSllagPellSdtyls~FL~qlq~egySIFVVkG~lP 164 (315)
T KOG2935|consen 104 RAFICNLKE----HWFTIRKFGKQWFNLNSLLAGPELLSDTYLSAFLAQLQQEGYSIFVVKGDLP 164 (315)
T ss_pred hhhhhcchh----hhhhHhhhcchhccchhhhcchHHHHHHHHHHHHHHHHhCCeeEEEEecCCC
Confidence 578998877 999999999999999864332211111 13458999998886553
No 87
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=22.88 E-value=40 Score=27.87 Aligned_cols=55 Identities=16% Similarity=0.316 Sum_probs=32.7
Q ss_pred CCCcEEecc--------cCccccC-CCCCCchhhhhccCCCCCCCc----eEEEEc-----CCCceeeccCCcee
Q 008267 74 CPRLYACMA--------CAAVSCH-VPPHSSHVAIHATKTSSACSH----EIAVDV-----DRAELFCCACRDQV 130 (572)
Q Consensus 74 ~~~~~~Cl~--------C~~~~c~-~~~~~~h~~~H~~~~~~~~~H----~~~~~~-----~~~~~~C~~c~~~v 130 (572)
+..+|+|-. ||+.+|. +.+-..||+.|-..+. ..| +..+.- .-.+.||-.|+..+
T Consensus 12 ~~~l~i~~~~~k~vkc~CGh~f~d~r~NwK~~alv~vRd~~--E~~~~iYp~~~aPdp~w~~irEyyCP~Cgt~l 84 (112)
T PF08882_consen 12 GPHLWIVQKKDKVVKCDCGHEFCDARENWKLGALVYVRDPE--EIHPEIYPFTMAPDPEWQVIREYYCPGCGTQL 84 (112)
T ss_pred CCcEEEEEecCceeeccCCCeecChhcChhhCcEEEecChH--HhhhhhcccccCCCCCcEEEEEEECCCCccee
Confidence 356677777 9999998 3344577777763221 122 222222 22456899998765
No 88
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=22.80 E-value=28 Score=37.46 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=20.6
Q ss_pred hcCCCcccccCchHHHHHHHHHHHH
Q 008267 278 HASNLASYEQQDAHEFFISMLDGIH 302 (572)
Q Consensus 278 ~~~~f~~~~QqDA~Efl~~lLd~L~ 302 (572)
..-.+.+..-.++.+|+..++..|.
T Consensus 157 ~~~~l~g~~n~g~tcfmn~ilqsl~ 181 (492)
T KOG1867|consen 157 TALGLRGLRNLGSTCFMNVILQSLL 181 (492)
T ss_pred eeecccccccccHHHHHHHHHHHhh
Confidence 3445677788999999999999886
No 89
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=22.66 E-value=3.3e+02 Score=22.25 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=35.0
Q ss_pred ccEEEEEEEee---eCC--CCCC-----cEEEEEEeCCcEEEEcCcceeeeCcccccCCceeEEEEEEec
Q 008267 501 SEFELFAVVTH---TGK--LDAG-----HYVTYLRLSNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKM 560 (572)
Q Consensus 501 ~~Y~L~avV~H---~G~--~~~G-----HY~ayvr~~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r~~ 560 (572)
..=++.+.|.| .|- -..| ||+..+. ..+||..|..++...-.+.++|+=|+-+-.
T Consensus 13 ~~~~vk~li~HPMetGl~~d~tg~~iPa~~I~~v~-----v~~ng~~v~~~~~~~siS~NP~l~F~~~~~ 77 (100)
T PF08770_consen 13 GVVEVKALISHPMETGLRKDQTGKYIPAHFIEEVE-----VTYNGKPVFRADWGPSISENPYLRFSFKGK 77 (100)
T ss_dssp EEEEEEEEE----B-S-BB-TTS-BB--B-EEEEE-----EEETTEEEEEEEE-TTB-SS-EEEEEEEES
T ss_pred CcEEEEEEEECCCccccccCCCCCCCChHheEEEE-----EEECCEEEEEEEeCCcccCCCcEEEEEecC
Confidence 45688899998 453 1245 5555444 347999999999999999999999998763
No 90
>cd00524 SORL Superoxide reductase-like (SORL) domain; present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=22.23 E-value=3.9e+02 Score=20.92 Aligned_cols=46 Identities=20% Similarity=0.371 Sum_probs=30.1
Q ss_pred EEEEeeeC----CCCCCcEEEEEEeCCcEEEEcCcceeeeCcccccCCceeEEEEEE
Q 008267 506 FAVVTHTG----KLDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRAAQGYMMFYVQ 558 (572)
Q Consensus 506 ~avV~H~G----~~~~GHY~ayvr~~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r 558 (572)
..|.+..| .+.-+||+.++. +.++|..|..+.... ...++.-|..+
T Consensus 17 ~~v~V~vg~~~Hpm~~~HyI~wI~-----l~~~d~~v~~~~l~P--~~~P~~~F~l~ 66 (86)
T cd00524 17 FDVKVKVGSVPHPMTEEHYIEWIE-----LYFGDEKVGRVELTP--GTKPEATFTVK 66 (86)
T ss_pred CEEEEEECCccCCCCCCcEEEEEE-----EEECCeEEEEEECCC--CCCCEEEEEEe
Confidence 45667777 388999999885 345665666654433 55667766654
No 91
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=21.74 E-value=1.9e+02 Score=25.08 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=11.9
Q ss_pred EEeeEEEeCcCCCeeee
Q 008267 330 ILRSDVMCMACGFTSTT 346 (572)
Q Consensus 330 ~l~s~i~C~~C~~~s~~ 346 (572)
...-...|..||.....
T Consensus 66 ~~p~~~~C~~CG~~~~~ 82 (135)
T PRK03824 66 EEEAVLKCRNCGNEWSL 82 (135)
T ss_pred ecceEEECCCCCCEEec
Confidence 34457899999976543
No 92
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.48 E-value=68 Score=22.92 Aligned_cols=24 Identities=29% Similarity=0.658 Sum_probs=19.4
Q ss_pred CcccCCCCCC--CCCcEEecccCccc
Q 008267 64 PRCGVCGDSS--CPRLYACMACAAVS 87 (572)
Q Consensus 64 ~~C~~C~~~~--~~~~~~Cl~C~~~~ 87 (572)
.+|..|+... +.++-+|-.||...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~Cgapy 31 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPY 31 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcc
Confidence 5799998654 67899999999774
No 93
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=21.24 E-value=5.1e+02 Score=22.60 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=44.8
Q ss_pred eecCCceEEEEEEEeEecCC---CccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEE
Q 008267 430 IRKLPLVSCFHIKRFEHSSV---RKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELF 506 (572)
Q Consensus 430 i~~lP~vL~i~lkRf~~~~~---~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~ 506 (572)
+..--.-+++-++||.|... .....++..-+.|...+.+..- + -.........+|.
T Consensus 30 ~~~~~rrf~l~~NRF~WE~~~~~~~~~eR~rs~L~f~~V~~Vks~---g------------------i~~~~~d~vLsLL 88 (138)
T PF11164_consen 30 WLPKERRFALLLNRFRWEDAERRGRPPERVRSALRFDRVLAVKSR---G------------------IDRKDPDAVLSLL 88 (138)
T ss_pred EcccCCEEEEEeeeeEeccCccCCCCCcEEEEEEEEccEeeeeec---C------------------CCCCCCCceEEEE
Confidence 44445678999999999863 1233445555556554443210 0 0023455789999
Q ss_pred EEEeeeCCCCCCcEE
Q 008267 507 AVVTHTGKLDAGHYV 521 (572)
Q Consensus 507 avV~H~G~~~~GHY~ 521 (572)
||-.+-|..-+||-.
T Consensus 89 ai~fe~~e~p~G~v~ 103 (138)
T PF11164_consen 89 AITFEPGEAPAGHVL 103 (138)
T ss_pred EEEEEeCCCCCcEEE
Confidence 999999887788854
No 94
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=21.07 E-value=61 Score=20.69 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=8.9
Q ss_pred CCcEEecccCcc
Q 008267 75 PRLYACMACAAV 86 (572)
Q Consensus 75 ~~~~~Cl~C~~~ 86 (572)
..-++|..||.|
T Consensus 20 r~R~vC~~Cg~I 31 (34)
T PF14803_consen 20 RERLVCPACGFI 31 (34)
T ss_dssp S-EEEETTTTEE
T ss_pred ccceECCCCCCE
Confidence 446789999887
No 95
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=20.83 E-value=74 Score=20.15 Aligned_cols=25 Identities=20% Similarity=0.636 Sum_probs=16.1
Q ss_pred CCcccCCCCC----CCCCcEEecccCccc
Q 008267 63 VPRCGVCGDS----SCPRLYACMACAAVS 87 (572)
Q Consensus 63 ~~~C~~C~~~----~~~~~~~Cl~C~~~~ 87 (572)
.+.|..|+.. .....+.|..||.+.
T Consensus 3 ~~~C~~C~~~~i~~~~~~~~~C~~Cg~~~ 31 (33)
T PF08792_consen 3 LKKCSKCGGNGIVNKEDDYEVCIFCGSSF 31 (33)
T ss_pred ceEcCCCCCCeEEEecCCeEEcccCCcEe
Confidence 3678888621 123467899998763
No 96
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=20.74 E-value=64 Score=32.43 Aligned_cols=24 Identities=21% Similarity=0.708 Sum_probs=16.2
Q ss_pred CcccCCCCCCC------CCcEEecccCccc
Q 008267 64 PRCGVCGDSSC------PRLYACMACAAVS 87 (572)
Q Consensus 64 ~~C~~C~~~~~------~~~~~Cl~C~~~~ 87 (572)
..|-+|+...+ --+||||.|.-..
T Consensus 20 k~CfeC~a~NPQWvSvsyGIfICLECSG~H 49 (386)
T KOG0704|consen 20 KKCFECGAPNPQWVSVSYGIFICLECSGKH 49 (386)
T ss_pred CceeecCCCCCCeEeecccEEEEEecCCcc
Confidence 57999973221 1289999997653
No 97
>PF07150 DUF1390: Protein of unknown function (DUF1390); InterPro: IPR009820 This entry is represented by Paramecium bursaria Chlorella virus 1, A79R; it is a family of uncharacterised viral proteins.
Probab=20.35 E-value=81 Score=30.01 Aligned_cols=35 Identities=23% Similarity=0.629 Sum_probs=27.2
Q ss_pred CCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcC
Q 008267 75 PRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVD 117 (572)
Q Consensus 75 ~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~ 117 (572)
..+|.| .||+- ....++|.+|.+ ...+|.+.....
T Consensus 5 ~~lY~C-~CGYk----T~~~gnAsKHkK---tsC~hem~~~~~ 39 (229)
T PF07150_consen 5 ITLYTC-GCGYK----TTNKGNASKHKK---TSCGHEMKSETK 39 (229)
T ss_pred EEEEEe-cCCce----ecCCccccccCC---CcCCCeeeeeee
Confidence 358899 78887 556799999996 478999877763
No 98
>PHA02942 putative transposase; Provisional
Probab=20.16 E-value=87 Score=32.60 Aligned_cols=24 Identities=25% Similarity=0.706 Sum_probs=17.5
Q ss_pred CcccCCCCCC---CCCcEEecccCccc
Q 008267 64 PRCGVCGDSS---CPRLYACMACAAVS 87 (572)
Q Consensus 64 ~~C~~C~~~~---~~~~~~Cl~C~~~~ 87 (572)
..|+.|+... ..+.|.|..||+.+
T Consensus 326 q~Cs~CG~~~~~l~~r~f~C~~CG~~~ 352 (383)
T PHA02942 326 VSCPKCGHKMVEIAHRYFHCPSCGYEN 352 (383)
T ss_pred ccCCCCCCccCcCCCCEEECCCCCCEe
Confidence 4599997332 23689999999985
Done!