Query 008267
Match_columns 572
No_of_seqs 396 out of 2100
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 22:09:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mhs_A Ubiquitin carboxyl-term 100.0 5.5E-84 1.9E-88 691.9 26.8 410 64-562 49-476 (476)
2 3ihp_A Ubiquitin carboxyl-term 100.0 1.3E-81 4.5E-86 705.6 32.7 459 63-560 215-853 (854)
3 2y6e_A Ubiquitin carboxyl-term 100.0 1.1E-68 3.7E-73 554.7 32.4 337 193-564 3-363 (367)
4 2gfo_A Ubiquitin carboxyl-term 100.0 9.4E-67 3.2E-71 543.9 28.5 315 194-560 58-396 (396)
5 3nhe_A Ubiquitin carboxyl-term 100.0 4.7E-66 1.6E-70 531.6 29.9 318 192-561 3-344 (348)
6 3i3t_A Ubiquitin carboxyl-term 100.0 1.2E-65 4.2E-70 529.9 24.5 314 196-560 1-351 (355)
7 1nb8_A Ubiquitin carboxyl-term 100.0 1.1E-63 3.8E-68 513.3 28.8 298 195-562 3-317 (353)
8 2ayn_A Ubiquitin carboxyl-term 100.0 1.3E-63 4.3E-68 523.9 25.9 338 195-569 11-403 (404)
9 1vjv_A Ubiquitin carboxyl-term 100.0 6.8E-62 2.3E-66 511.9 24.1 319 193-561 19-415 (415)
10 2f1z_A Ubiquitin carboxyl-term 100.0 2.6E-60 8.8E-65 512.9 27.6 302 192-563 169-487 (522)
11 2vhf_A Ubiquitin carboxyl-term 100.0 2.4E-31 8.1E-36 261.9 10.1 243 198-535 9-308 (374)
12 3c5k_A HD6, histone deacetylas 99.9 3.8E-24 1.3E-28 175.7 6.6 83 63-152 24-106 (109)
13 2g45_A Ubiquitin carboxyl-term 99.9 4.9E-23 1.7E-27 174.0 5.1 85 63-158 34-128 (129)
14 2uzg_A Ubiquitin carboxyl-term 99.8 1.3E-21 4.4E-26 157.9 4.3 66 64-135 26-94 (97)
15 2ida_A Hypothetical protein; z 99.8 2.3E-21 7.9E-26 155.3 4.7 68 63-134 18-89 (102)
16 2i50_A Ubiquitin carboxyl-term 99.8 7.6E-21 2.6E-25 160.6 5.0 74 64-138 29-114 (126)
17 3mp2_A Non-structural protein 97.9 0.0002 6.8E-09 64.9 13.9 70 196-298 11-80 (211)
18 2fe8_A PP1AB, ORF1AB, replicas 97.2 0.0092 3.2E-07 57.7 15.9 74 195-297 99-173 (315)
19 1wg2_A Zinc finger (AN1-like) 84.0 1.2 4E-05 31.9 3.9 29 61-90 13-41 (64)
20 1wfp_A Zinc finger (AN1-like) 82.8 1.2 4.3E-05 32.7 3.7 30 60-90 22-51 (74)
21 1wfh_A Zinc finger (AN1-like) 82.6 1.5 5.2E-05 31.3 4.0 29 61-90 13-41 (64)
22 1qmy_A Protease, leader protea 79.5 0.9 3.1E-05 37.7 2.2 35 506-543 110-144 (167)
23 1x4w_A Hypothetical protein FL 73.8 1.2 4.2E-05 32.1 1.4 30 60-90 12-44 (67)
24 2xzl_A ATP-dependent helicase 71.4 2.5 8.5E-05 47.1 3.9 61 64-128 12-79 (802)
25 1wff_A Riken cDNA 2810002D23 p 62.6 8.1 0.00028 29.3 3.9 29 61-90 23-52 (85)
26 2wjy_A Regulator of nonsense t 57.4 5.9 0.0002 44.0 3.5 61 64-128 7-74 (800)
27 2ww6_A Fibritin, T4 fibritin; 55.2 6.3 0.00022 22.4 1.6 15 521-535 11-25 (27)
28 1wfl_A Zinc finger protein 216 54.3 10 0.00035 27.8 3.1 28 62-90 24-51 (74)
29 3ihp_A Ubiquitin carboxyl-term 50.9 9.1 0.00031 42.9 3.6 44 64-116 47-92 (854)
30 3o65_A Putative ataxin-3-like 48.6 16 0.00054 32.5 4.1 53 505-561 110-170 (191)
31 3a43_A HYPD, hydrogenase nicke 45.6 28 0.00096 29.2 5.1 36 291-346 41-82 (139)
32 3lrq_A E3 ubiquitin-protein li 39.9 13 0.00043 29.2 1.9 47 64-131 23-69 (100)
33 1dl6_A Transcription factor II 35.6 29 0.00099 24.2 3.0 30 60-89 8-42 (58)
34 2oxg_Z SOXZ protein; immunoglo 33.4 1.1E+02 0.0039 24.2 6.6 53 502-559 19-81 (108)
35 3j21_g 50S ribosomal protein L 31.0 6.1 0.00021 26.8 -1.1 23 64-86 15-37 (51)
36 1qmy_A Protease, leader protea 30.4 39 0.0013 28.1 3.3 22 197-218 12-33 (167)
37 2ebr_A Nuclear pore complex pr 27.6 38 0.0013 22.5 2.3 27 60-86 8-34 (47)
38 2csy_A Zinc finger protein 183 24.1 63 0.0021 23.7 3.4 46 63-131 15-60 (81)
39 2ecj_A Tripartite motif-contai 23.8 47 0.0016 22.3 2.5 25 63-89 15-39 (58)
40 1zso_A Hypothetical protein; s 23.7 3.4E+02 0.012 23.2 9.0 30 516-546 129-159 (164)
41 2ebv_A Nuclear pore complex pr 21.7 56 0.0019 22.7 2.3 29 57-85 25-53 (57)
42 2yqq_A Zinc finger HIT domain- 20.1 99 0.0034 21.3 3.3 23 64-89 13-35 (56)
No 1
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=5.5e-84 Score=691.90 Aligned_cols=410 Identities=30% Similarity=0.640 Sum_probs=330.9
Q ss_pred CcccCCCCCCCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCceeeccCCceeeCCchhhHHhhhc
Q 008267 64 PRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVVLAH 143 (572)
Q Consensus 64 ~~C~~C~~~~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~~~C~~c~~~v~~~~~~~~~~~~~ 143 (572)
++|++|......++|+||+||++|||+ ++||+.|+ .+++|+++|++.++++|||.|+++|+|+++......
T Consensus 49 ~~C~~c~~~~~~~~~~cl~cg~~~c~~---~~h~~~H~----~~~~h~~~~~~~~~~~~c~~~~~~v~d~~l~~~~~~-- 119 (476)
T 3mhs_A 49 MKCGTCHEINSGATFMCLQCGFCGCWN---HSHFLSHS----KQIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAIL-- 119 (476)
T ss_dssp SBCTTTCCBCSSSEEEESSSSCEEETT---TTHHHHHH----HHHCCCEEEETTTCCEEETTTTEEECSCHHHHTGGG--
T ss_pred CCcccccCCCCCCceEeCCCCCCccCC---chHHHHHh----cccCCcEEEECCCCcEEeCCCCCCcccHHHHHHHHh--
Confidence 679999633237999999999999994 79999999 788999999999999999999999999987422111
Q ss_pred eeccccCCChhhhhhhcccCCCCCCCChhhhhhcccCCCCCCCCCCCCCCCCCcccccccCCchhhHHHHHHHHhCChhH
Q 008267 144 TTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGDLPRGLRGLNNLGNTCFMNSVLQALFHTPPL 223 (572)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~f 223 (572)
..+ |.. .... ... ......+|++||.|+|||||||||||+|+++|+|
T Consensus 120 -~~~-------------------~~~-~~~~-----~~~-------~~~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~f 166 (476)
T 3mhs_A 120 -AKY-------------------WDD-VCTK-----TMV-------PSMERRDGLSGLINMGSTCFMSSILQCLIHNPYF 166 (476)
T ss_dssp -GGG-------------------HHH-HHHH-----EEC-------CCGGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHH
T ss_pred -hhc-------------------cch-hhhc-----ccC-------CCccCCCCCCCCCcCCccHHHHHHHHHHhCCHHH
Confidence 000 100 0000 000 1134578999999999999999999999999999
Q ss_pred HHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCC---------ccChHH---HHHHHHHhcCCCcccccCchH
Q 008267 224 RNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRM---------PYSPAK---FLYSWWRHASNLASYEQQDAH 291 (572)
Q Consensus 224 r~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~---------~i~p~~---~l~~l~~~~~~f~~~~QqDA~ 291 (572)
|++++...+.. .|.. ..+..|+.++|..+|..+++.... .+.|.. ++..+|+..+.|.+++|||||
T Consensus 167 r~~~l~~~~~~-~~~~-~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~ 244 (476)
T 3mhs_A 167 IRHSMSQIHSN-NCKV-RSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAH 244 (476)
T ss_dssp HHHHHTTHHHH-HCSS-CCTTTCHHHHHHHHHHHHHSCCCC--------CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHH
T ss_pred HHHHHhcchhh-hccC-CCcccchHHHHHHHHHHHhhcccccccccccccccCcchHHHHHHHHHHhccccCCCCCcCHH
Confidence 99998654332 2222 234678999999999999975322 344544 555667999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCC----CCCCCcccccccccceEEeeEEEeCcCCCee-eeeeCCeeeeeccCCCCCCCcc
Q 008267 292 EFFISMLDGIHEKVEKDQHKPR----SQGNGDCCIAHRVFSGILRSDVMCMACGFTS-TTFDPCVDFSLDLEPNQGSSMK 366 (572)
Q Consensus 292 Efl~~lLd~L~~~~~~~~~~~~----~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s-~~~e~f~~lsL~i~~~~~~~~~ 366 (572)
|||.+||+.|++++........ .......++|+++|+|++.++++|..|+.++ ++.++|++|+|+||.
T Consensus 245 EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~------- 317 (476)
T 3mhs_A 245 EFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD------- 317 (476)
T ss_dssp HHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTT-------
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhh-------
Confidence 9999999999998765443211 1112233789999999999999999999996 458999999999984
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEEEEEEeEe
Q 008267 367 TSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEH 446 (572)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~ 446 (572)
..+|++||+.|+.+|.+++.+ |.|++|+..+.++|+.+|.++|+||+|||+||.+
T Consensus 318 ------------------------~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~ 372 (476)
T 3mhs_A 318 ------------------------KKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEH 372 (476)
T ss_dssp ------------------------CCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEE
T ss_pred ------------------------hhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccc
Confidence 358999999999999998644 9999999999999999999999999999999998
Q ss_pred cCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEe
Q 008267 447 SSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRL 526 (572)
Q Consensus 447 ~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~ 526 (572)
+. .+...|+++.|.||..|||++|+....... ...........|+|+|||+|.|++++|||++|+|.
T Consensus 373 ~~-~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~------------~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~ 439 (476)
T 3mhs_A 373 LL-NGSNRKLDDFIEFPTYLNMKNYCSTKEKDK------------HSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKI 439 (476)
T ss_dssp CT-TSCEEECCCCCBCCSEEECGGGBSCCBCCC--------------CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEEC
T ss_pred cC-CCCeEECCEEEcCCCeeechhhcCcccccc------------cccccCCCCCcEEEEEEEEeCCCCCCCceEEEEEC
Confidence 74 467899999999999999999987542110 00112335678999999999999999999999997
Q ss_pred -CCcEEEEcCcceeeeCcccccCCceeEEEEEEeccc
Q 008267 527 -SNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKMLY 562 (572)
Q Consensus 527 -~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r~~~~ 562 (572)
+++||+|||+.|+++++++|...+||||||+|++++
T Consensus 440 ~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~n 476 (476)
T 3mhs_A 440 SGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQVN 476 (476)
T ss_dssp TTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEEEC
T ss_pred CCCcEEEEeCCceEECCHHHhccCCcEEEEEEEecCC
Confidence 789999999999999999999999999999999763
No 2
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-81 Score=705.58 Aligned_cols=459 Identities=17% Similarity=0.305 Sum_probs=336.2
Q ss_pred CCcccCCCCCCCCCcEEecccCccccCC-----CCCCchhhhhccCCCCCCCceEEEEcCC-----CceeeccCCceeeC
Q 008267 63 VPRCGVCGDSSCPRLYACMACAAVSCHV-----PPHSSHVAIHATKTSSACSHEIAVDVDR-----AELFCCACRDQVYD 132 (572)
Q Consensus 63 ~~~C~~C~~~~~~~~~~Cl~C~~~~c~~-----~~~~~h~~~H~~~~~~~~~H~~~~~~~~-----~~~~C~~c~~~v~~ 132 (572)
.++|++|. ...++|+||+||++|||| +++++||+.|+ .+++||++|++.+ +++|||.|+++|+|
T Consensus 215 ~~~C~~c~--~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~----~~~~H~~~~~l~t~~~~~~~~~cy~~~~~v~~ 288 (854)
T 3ihp_A 215 GWKCSKCD--MRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHY----RETGYPLAVKLGTITPDGADVYSYDEDDMVLD 288 (854)
T ss_dssp CCCCSSSC--CCSSEEEETTTCCEEECCBC-CCCBCCSHHHHHH----HHHCCCEEEETTCCBTTBCCEEETTTTEECBC
T ss_pred CCcCcCcC--CcCceEEEecCCCccccccccCCCCCchHHHHHH----hhcCCcEEEEcCCcCCCCCeEEEccCCCeeeC
Confidence 37899996 457999999999999994 34589999999 7889999999999 99999999999999
Q ss_pred CchhhHHhhhceeccccCCChhhhhhhcccCCCC-CCCChhhhhhcccCCCCCCCCCCCCCCCCCcccccccCCchhhHH
Q 008267 133 RDFDAAVVLAHTTSIIQSSKPENLRKRRRIDYRP-WSPDLRERSLMVNNASPIDSMSSSNGDLPRGLRGLNNLGNTCFMN 211 (572)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCY~N 211 (572)
+.++.. +.++|++.....++++...++.. .++...++..+...+ ....+.+++|++||.|+|||||||
T Consensus 289 ~~l~~~-----l~~~gi~~~~~~kt~k~~~el~~~~n~~~g~~~~~~~~g------~~l~p~~~~G~~GL~NlGNTCYmN 357 (854)
T 3ihp_A 289 PSLAEH-----LSHFGIDMLKMQKTDKTMTELEIDMNQRIGEWELIQESG------VPLKPLFGPGYTGIRNLGNSCYLN 357 (854)
T ss_dssp TTHHHH-----HHHTTCCC-----------------------------------------CCCSTTCCCBCCCSSCHHHH
T ss_pred ccHHHH-----HHHhCcccccccccchhhhhhhhhhccccchhhhhcccC------cccccccCCCccceEecCCceehh
Confidence 998653 34466655443333433332222 111111232222222 224478899999999999999999
Q ss_pred HHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCC--------------------CCccChHHH
Q 008267 212 SVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGD--------------------RMPYSPAKF 271 (572)
Q Consensus 212 SvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--------------------~~~i~p~~~ 271 (572)
||||+|+++|+||++|+...+.... .....+..++.++|.+||..||++. ...++|..|
T Consensus 358 SvLQ~L~~~p~fr~~ll~~~~~~~~-~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~isP~~f 436 (854)
T 3ihp_A 358 SVVQVLFSIPDFQRKYVDKLEKIFQ-NAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMF 436 (854)
T ss_dssp HHHHHHTTSHHHHHHHTTTHHHHHH-HCCSCGGGCHHHHHHHHHHHHHSCC---------------------CCBCCHHH
T ss_pred HHHHHHhCcHHHHHHHHhhhhhhhc-cccCCccccHHHHHHHHHHHHhccccccccccccccccccccccCCCccChHHH
Confidence 9999999999999999854322111 1112346789999999999999753 347999999
Q ss_pred HHHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCe
Q 008267 272 LYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCV 351 (572)
Q Consensus 272 l~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~ 351 (572)
+..++...+.|.+++||||||||.+||+.|++++... .++.++|.|++.++++|..|++++.+.++|+
T Consensus 437 ~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~~------------s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~ 504 (854)
T 3ihp_A 437 KALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRSS------------ENPNEVFRFLVEEKIKCLATEKVKYTQRVDY 504 (854)
T ss_dssp HHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTTS------------CCGGGGTCEEEEEEEEETTTTEEEEEEEEES
T ss_pred HHHHhhhccccccccccCHHHHHHHHHHHHHHHhccc------------CCchhhcCceEEEEEEecCCCCEeEEeeece
Confidence 9999999999999999999999999999999976431 3588999999999999999999999999999
Q ss_pred eeeeccCCCCCCCcccc--C--CCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEE
Q 008267 352 DFSLDLEPNQGSSMKTS--S--TKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQ 427 (572)
Q Consensus 352 ~lsL~i~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~ 427 (572)
+|+|+||.......... . ........+.. .+....+..+|++||+.|+.+|.|+ +|+|++|+.++.+.|+
T Consensus 505 ~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~sL~dcL~~f~~~E~Le---~y~C~~C~~k~~a~K~ 578 (854)
T 3ihp_A 505 IMQLPVPMDAALNKEELLEYEEKKRQAEEEKMA---LPELVRAQVPFSSCLEAYGAPEQVD---DFWSTALQAKSVAVKT 578 (854)
T ss_dssp EEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCC---CCCCCCEECCHHHHHHHHHSCEEEE---EEEETTTTEEEEEEEE
T ss_pred EEEeeCCccccccccchhhhccccccccccccc---ccccccCCCCHHHHHHHhcCceEee---eeeccccCCcceeeEE
Confidence 99999996431100000 0 00000000000 0112234579999999999999998 4999999999999999
Q ss_pred EEeecCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhcccc--------------------------
Q 008267 428 MSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRF-------------------------- 481 (572)
Q Consensus 428 ~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~-------------------------- 481 (572)
.+|.+||+||+|||+||.++.. +...|+++.|.||+.|||++|+.......+.
T Consensus 579 ~~i~~lP~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~~lp~~~~~~~~~~~~~~~~~d~~~l~ 657 (854)
T 3ihp_A 579 TRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPMLDESVII 657 (854)
T ss_dssp EEESSCCSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGGBCCCSCTTCCBCCCC----------------CHHHH
T ss_pred EEeeeCCceEEEEeehheecCC-CceEECCeEEecCCcEehHHhccCCCCCCceecccccccccccccccccCcCHHHHH
Confidence 9999999999999999999753 7789999999999999999998753311000
Q ss_pred -------------------CCC------------------ccCCC-----------------------------------
Q 008267 482 -------------------GNR------------------FFPFD----------------------------------- 489 (572)
Q Consensus 482 -------------------~~~------------------~~~~~----------------------------------- 489 (572)
++. ..+..
T Consensus 658 ~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a 737 (854)
T 3ihp_A 658 QLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQA 737 (854)
T ss_dssp HHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTTTCCHHHH
T ss_pred HHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCHHHHHHHHHcCCCHHHH
Confidence 000 00000
Q ss_pred ----------------------------------------------CCCCCCCCCCCccEEEEEEEeeeCC-CCCCcEEE
Q 008267 490 ----------------------------------------------GDESNTLNEPSSEFELFAVVTHTGK-LDAGHYVT 522 (572)
Q Consensus 490 ----------------------------------------------~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a 522 (572)
.............|+|+|||+|.|. +++|||+|
T Consensus 738 ~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~~GHY~~ 817 (854)
T 3ihp_A 738 LKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVC 817 (854)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC------------------CCCCCCCSEEEEEEEEEEESSCSSCCEEEE
T ss_pred HHHHHhhcCcHHHHHHhhhcCcccccccccccccccccccccccccccccCCCCCCCceEEEEEEEEeecCCCCCcCeEE
Confidence 0000112334558999999999997 89999999
Q ss_pred EEEeCCcEEEEcCcceeeeCcccccCCceeEEEEEEec
Q 008267 523 YLRLSNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKM 560 (572)
Q Consensus 523 yvr~~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r~~ 560 (572)
|+|.+++||+|||+.|+++ +++....||||||+|.+
T Consensus 818 ~~~~~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 818 HIKKEGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp EEEETTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred EEEeCCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence 9999999999999999997 44677899999999964
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-68 Score=554.71 Aligned_cols=337 Identities=29% Similarity=0.569 Sum_probs=275.7
Q ss_pred CCCCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccC-CCCcccHHHHHHHHHHHHHcCCCCccChHHH
Q 008267 193 DLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSK-NGVRLCLACDLDTMFSAIFCGDRMPYSPAKF 271 (572)
Q Consensus 193 ~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~ 271 (572)
...+|++||.|+|||||||||||+|+++|+|+++|+...+........ .+...++.++|..||..||++....++|..|
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 82 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF 82 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 457899999999999999999999999999999999765443221111 1234579999999999999998889999999
Q ss_pred HHHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCC-----CC---------------CcccccccccceEE
Q 008267 272 LYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQ-----GN---------------GDCCIAHRVFSGIL 331 (572)
Q Consensus 272 l~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~-----~~---------------~~~~~i~~~F~g~l 331 (572)
+..++...+.|.+++||||||||.+|||.|++++.....++... +. ...++|.++|+|++
T Consensus 83 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l 162 (367)
T 2y6e_A 83 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLF 162 (367)
T ss_dssp HHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEE
Confidence 99999999999999999999999999999999876543322110 00 02367899999999
Q ss_pred eeEEEeCcCCCeeeeeeCCeeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCC
Q 008267 332 RSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQ 411 (572)
Q Consensus 332 ~s~i~C~~C~~~s~~~e~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~ 411 (572)
.++++|..|++++.+.|+|++|+|+||.......... . .. .........+|++||+.|+.+|.+++++
T Consensus 163 ~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~------~--~~----~~~~~~~~~sL~~~L~~f~~~E~l~~~~ 230 (367)
T 2y6e_A 163 KSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGP------M--LQ----PQKKKKTTVALRDCIELFTTMETLGEHD 230 (367)
T ss_dssp EEEEECTTTCCEEEEEEEESSEEEECCC-------------------------------CEEHHHHHHHHTSCEECCC-C
T ss_pred eeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceee------e--ec----cccccCCCCCHHHHHHHhcccccCCCCC
Confidence 9999999999999999999999999996431100000 0 00 0000124579999999999999999999
Q ss_pred ccccccccccceeEEEEEeecCCceEEEEEEEeEecCCCccccccceeeecCC-CCCCccccchhhhccccCCCccCCCC
Q 008267 412 KFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPL-SLDMAPYLSSSILRSRFGNRFFPFDG 490 (572)
Q Consensus 412 ~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~ 490 (572)
.|.|++|+.++.++|+..|.++|+||+|||+||.++. +...|+++.|.||. .|||++|+...
T Consensus 231 ~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~--------------- 293 (367)
T 2y6e_A 231 PWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNR--YWRDKLDTVVEFPIRGLNMSEFVCNL--------------- 293 (367)
T ss_dssp CEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECS--SCEEECCCCEECCSSCEECGGGBSCS---------------
T ss_pred CccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecC--ccceecCceEEecCCcCChhhhccCC---------------
Confidence 9999999999999999999999999999999999985 56789999999997 79999998642
Q ss_pred CCCCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEe--CCcEEEEcCcceeeeCcccccCCceeEEEEEEeccccc
Q 008267 491 DESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRL--SNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKMLYYK 564 (572)
Q Consensus 491 ~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~--~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r~~~~~~ 564 (572)
......|+|+|||+|.|.+++|||+||+|. +++||+|||+.|+++++++|...+||||||+|++....
T Consensus 294 ------~~~~~~Y~L~avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~ 363 (367)
T 2y6e_A 294 ------SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFY 363 (367)
T ss_dssp ------SSCCCEEEEEEEEEEECSSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC---
T ss_pred ------CCCCceEEEEEEeecCCCCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCCC
Confidence 224578999999999999999999999997 58999999999999999999999999999999876543
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=9.4e-67 Score=543.91 Aligned_cols=315 Identities=32% Similarity=0.627 Sum_probs=271.2
Q ss_pred CCCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccC-CCCcccHHHHHHHHHHHHHcCCCCccChHHHH
Q 008267 194 LPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSK-NGVRLCLACDLDTMFSAIFCGDRMPYSPAKFL 272 (572)
Q Consensus 194 ~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l 272 (572)
..+|++||.|+|||||||||||+|+++|+|+++|+...+........ .+...++.+++..+++.||.+....++|..|+
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHH
Confidence 46899999999999999999999999999999998754322111111 12245788999999999999888889999999
Q ss_pred HHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCC--------------------CCcccccccccceEEe
Q 008267 273 YSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQG--------------------NGDCCIAHRVFSGILR 332 (572)
Q Consensus 273 ~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~--------------------~~~~~~i~~~F~g~l~ 332 (572)
..++...+.|.+++||||||||.+|||.|++++........... ....++|.++|+|++.
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE
Confidence 99999999999999999999999999999998865432211000 0123689999999999
Q ss_pred eEEEeCcCCCeeeeeeCCeeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCc
Q 008267 333 SDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQK 412 (572)
Q Consensus 333 s~i~C~~C~~~s~~~e~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~ 412 (572)
++++|..|++++.+.|+|++|+|+||... ..+|++||+.|+.+|.++++++
T Consensus 218 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~-----------------------------~~sL~~~L~~f~~~E~l~~~n~ 268 (396)
T 2gfo_A 218 STVQCLTCHKKSRTFEAFMYLSLPLASTS-----------------------------KCTLQDCLRLFSKEEKLTDNNR 268 (396)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCSCSS-----------------------------EEEHHHHHHHHTSCEEECSTTC
T ss_pred EEEEeCCCCceecccccceeeeecccccc-----------------------------cCCHHHHHHHhCCcccccCCcc
Confidence 99999999999999999999999999632 4699999999999999999999
Q ss_pred cccccccccceeEEEEEeecCCceEEEEEEEeEecCCCccccccceeeecCC-CCCCccccchhhhccccCCCccCCCCC
Q 008267 413 FFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPL-SLDMAPYLSSSILRSRFGNRFFPFDGD 491 (572)
Q Consensus 413 ~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~ 491 (572)
|.|++|+..+.+.|+..|.++|+||+|||+||.++. ....|+.+.|.||. .|||++|+...
T Consensus 269 ~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~---------------- 330 (396)
T 2gfo_A 269 FYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDG--RWKQKLQTSVDFPLENLDLSQYVIGP---------------- 330 (396)
T ss_dssp EEETTTTEEECEEEEEEEEECCSEEEEEECCEEECS--SSEEECCCEEECCSSCBCCGGGBCSC----------------
T ss_pred cccCCcccccceEEEEEEecCCcEEEEEecceeccC--ccceecCceEecchhhccccccccCC----------------
Confidence 999999999999999999999999999999999985 34689999999996 79999998642
Q ss_pred CCCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEe--CCcEEEEcCcceeeeCcccccCCceeEEEEEEec
Q 008267 492 ESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRL--SNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKM 560 (572)
Q Consensus 492 ~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~--~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r~~ 560 (572)
......|+|+|||+|.|++++|||+||+|. +++||+|||+.|++|++++|...+||||||+|++
T Consensus 331 -----~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 331 -----KNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp -----CSSCCCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred -----CCCCceEEEEEEEEecCCCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 123468999999999999999999999997 4899999999999999999999999999999863
No 5
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=4.7e-66 Score=531.58 Aligned_cols=318 Identities=33% Similarity=0.602 Sum_probs=274.7
Q ss_pred CCCCCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHH-cCCCCccChHH
Q 008267 192 GDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIF-CGDRMPYSPAK 270 (572)
Q Consensus 192 ~~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~~~~~~i~p~~ 270 (572)
....+|++||.|+|||||||||||+|+++|+||++++...+..... .......++.++|..||..|| ......++|..
T Consensus 3 sk~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~-~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~ 81 (348)
T 3nhe_A 3 SKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLH-HGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSE 81 (348)
T ss_dssp ---CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSC-SSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHH
T ss_pred CCCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhc-cCCCcccHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 3457899999999999999999999999999999998754432221 122346789999999999999 56667899999
Q ss_pred HHHHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCC--------------------CCcccccccccceE
Q 008267 271 FLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQG--------------------NGDCCIAHRVFSGI 330 (572)
Q Consensus 271 ~l~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~--------------------~~~~~~i~~~F~g~ 330 (572)
|+..++...+.|.+++||||||||.+|||.|++++........... ....++|.++|.|+
T Consensus 82 ~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~ 161 (348)
T 3nhe_A 82 FKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ 161 (348)
T ss_dssp HHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEE
T ss_pred HHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceE
Confidence 9999999999999999999999999999999999865433222110 11236789999999
Q ss_pred EeeEEEeCcCCCeeeeeeCCeeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCC
Q 008267 331 LRSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSD 410 (572)
Q Consensus 331 l~s~i~C~~C~~~s~~~e~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~ 410 (572)
+.+.++|..|++++.+.|+|++|+|+||.... +..+|++||+.|+.+|.++++
T Consensus 162 ~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~---------------------------~~~sl~~~L~~~~~~e~l~~~ 214 (348)
T 3nhe_A 162 LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGY---------------------------PEVTLMDCMRLFTKEDVLDGD 214 (348)
T ss_dssp EEEEEEETTTCCEEEEEEEESSEEECCCSSCS---------------------------SCEEHHHHHHHHHSCEEECGG
T ss_pred EEEEEEcCCCCCEeeeeccceEEeeeCCCccc---------------------------CCCCHHHHHHHhcCceEecCC
Confidence 99999999999999999999999999996321 246999999999999999999
Q ss_pred CccccccccccceeEEEEEeecCCceEEEEEEEeEecCCCccccccceeeecCC-CCCCccccchhhhccccCCCccCCC
Q 008267 411 QKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPL-SLDMAPYLSSSILRSRFGNRFFPFD 489 (572)
Q Consensus 411 ~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~ 489 (572)
++|.|++|+.++.+.|+..|.++|+||+|||+||.++. +...|+.+.|.||. .|||++|+...
T Consensus 215 ~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~--~~~~K~~~~v~fp~~~ldl~~~~~~~-------------- 278 (348)
T 3nhe_A 215 EKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESR--IRTSKLTTFVNFPLRDLDLREFASEN-------------- 278 (348)
T ss_dssp GCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCCS--SCCCBCCCCEECCSSCEECGGGBCTT--------------
T ss_pred CceECCCCCCcccEEEEEEeecCCceEEEEEEcccccC--CceeecCcceeccCCcCCHhhhcCCC--------------
Confidence 99999999999999999999999999999999998875 67899999999995 79999998542
Q ss_pred CCCCCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEe--CCcEEEEcCcceeeeCcccccCCceeEEEEEEecc
Q 008267 490 GDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRL--SNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKML 561 (572)
Q Consensus 490 ~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~--~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r~~~ 561 (572)
.....|+|+|||+|.|+.++|||+||+|. +++||+|||+.|+++++++|...+||||||+|++.
T Consensus 279 --------~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~ 344 (348)
T 3nhe_A 279 --------TNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASP 344 (348)
T ss_dssp --------CCCCEEEEEEEEEEEECSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC-
T ss_pred --------CCCCcEEEEEEEEccCCCCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCC
Confidence 24568999999999999999999999997 78999999999999999999999999999999864
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.2e-65 Score=529.93 Aligned_cols=314 Identities=29% Similarity=0.548 Sum_probs=264.2
Q ss_pred CcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCC-CccChHHHHHH
Q 008267 196 RGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDR-MPYSPAKFLYS 274 (572)
Q Consensus 196 ~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~i~p~~~l~~ 274 (572)
.|++||.|+|||||||||||+|+++|+||++++.......... .....++.++|..||..||.+.. ..++|..|+..
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~ 78 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPG--GGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAV 78 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC--------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCC--CCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 3899999999999999999999999999999987544322111 12245799999999999998765 67999999999
Q ss_pred HHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCC-----------------------------------CCc
Q 008267 275 WWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQG-----------------------------------NGD 319 (572)
Q Consensus 275 l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~-----------------------------------~~~ 319 (572)
++...+.|.+++||||||||.+|||.|++++.....+..... ...
T Consensus 79 l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T 3i3t_A 79 FQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERE 158 (355)
T ss_dssp HHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHC
T ss_pred HHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999998865432211000 001
Q ss_pred ccccccccceEEeeEEEeCcCCCeeeeeeCCeeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHH
Q 008267 320 CCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLD 399 (572)
Q Consensus 320 ~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~ 399 (572)
.++|.++|.|++.+.++|..|++++.+.++|++|+|+||.... ..+..+|++||+
T Consensus 159 ~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~-------------------------~~~~~sl~~~L~ 213 (355)
T 3i3t_A 159 DSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGF-------------------------AGGKVSLRDCFN 213 (355)
T ss_dssp CSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC--------------------------------CBHHHHHH
T ss_pred CCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCcccc-------------------------ccCccCHHHHHH
Confidence 2568999999999999999999999999999999999996421 013579999999
Q ss_pred hcCCccccCCCCccccccccccceeEEEEEeecCCceEEEEEEEeEecCCCccccccceeeecCC-CCCCccccchhhhc
Q 008267 400 RFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPL-SLDMAPYLSSSILR 478 (572)
Q Consensus 400 ~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~ 478 (572)
.|+.+|.++++++|.|++|+.++.++|+..|.++|+||+|||+||.++. +...|+...|.||. .|||.+|+...
T Consensus 214 ~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~--~~~~K~~~~v~fp~~~l~l~~~~~~~--- 288 (355)
T 3i3t_A 214 LFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASR--GSIKKSSVGVDFPLQRLSLGDFASDK--- 288 (355)
T ss_dssp HHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCS--SCCEECCCCCBCCSSCEECGGGBC-----
T ss_pred HhCCccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCC--CCceECCcceeCCccccCchhhccCC---
Confidence 9999999999999999999999999999999999999999999999885 67889999999995 69999998542
Q ss_pred cccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEeCCcEEEEcCcceeeeCcccccCCceeEEEEEE
Q 008267 479 SRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRAAQGYMMFYVQ 558 (572)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r 558 (572)
.....|+|+|||+|.|++++|||+||+|.+++||+|||+.|+++++++|...+||||||+|
T Consensus 289 -------------------~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r 349 (355)
T 3i3t_A 289 -------------------AGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQL 349 (355)
T ss_dssp ---------------------CCEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEETTEEEEECHHHHHTSCCSEEEEEE
T ss_pred -------------------CCCcceEEEEEEEecCCCCCCeEEEEEEcCCeEEEEcCCCcEECCHHHcCCCCcEEEEEEe
Confidence 2456899999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 008267 559 KM 560 (572)
Q Consensus 559 ~~ 560 (572)
.+
T Consensus 350 ~~ 351 (355)
T 3i3t_A 350 MQ 351 (355)
T ss_dssp C-
T ss_pred cc
Confidence 75
No 7
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=1.1e-63 Score=513.32 Aligned_cols=298 Identities=25% Similarity=0.416 Sum_probs=253.8
Q ss_pred CCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHH
Q 008267 195 PRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYS 274 (572)
Q Consensus 195 ~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~ 274 (572)
.+|++||.|+|||||||||||+|+++|+||++++...... .....++.++|+.+|..|+.+. .+++|..|+..
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~ 75 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 75 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT------SCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC------CcccccHHHHHHHHHHHHhhcC-CCCCCHHHHhh
Confidence 5789999999999999999999999999999997643211 1124579999999999999865 46899999887
Q ss_pred HHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeee
Q 008267 275 WWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFS 354 (572)
Q Consensus 275 l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~ls 354 (572)
+. .+.|.+++||||||||.+|||.|++++.... ..++|.++|+|++.+.++|..|++++.+.++|++|+
T Consensus 76 ~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~~---------~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~Ls 144 (353)
T 1nb8_A 76 FG--WETLDSFMQHDVQELCRVLLDNVENKMKGTC---------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQ 144 (353)
T ss_dssp HT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTTST---------TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEE
T ss_pred cC--CCCCCcccchhHHHHHHHHHHHHHHHhcCCC---------ccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEE
Confidence 73 4679999999999999999999999865321 124799999999999999999999999999999999
Q ss_pred eccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCC
Q 008267 355 LDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLP 434 (572)
Q Consensus 355 L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP 434 (572)
|+||. ..+|++||..|+.+|.+++++.|.|+.|+ .+.+.|+..|.++|
T Consensus 145 L~i~~-------------------------------~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP 192 (353)
T 1nb8_A 145 LSIKG-------------------------------KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLP 192 (353)
T ss_dssp ECCTT-------------------------------CSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCC
T ss_pred EEECC-------------------------------CcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCC
Confidence 99985 24899999999999999999999999996 57789999999999
Q ss_pred ceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCC
Q 008267 435 LVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGK 514 (572)
Q Consensus 435 ~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~ 514 (572)
+||+|||+||.++...+...|+++.|.||..|||++|+... .......|+|+|||+|.|.
T Consensus 193 ~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~--------------------~~~~~~~Y~L~avv~H~G~ 252 (353)
T 1nb8_A 193 PVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT--------------------DPKDPANYILHAVLVHSGD 252 (353)
T ss_dssp SEEEEEECCCC--------CCCCCCCBCCSEEECGGGBSSC--------------------CTTSCCEEEEEEEEEEESS
T ss_pred CceEEEEecEEEecccCceEecCcEEECCCeeehhhhhccc--------------------CCCCCceEEEEEEEEEeCC
Confidence 99999999999986556788999999999999999998642 1224578999999999999
Q ss_pred CCCCcEEEEEEe--CCcEEEEcCcceeeeCcccccC---------------CceeEEEEEEeccc
Q 008267 515 LDAGHYVTYLRL--SNKWYKCDDAWITEVNENTVRA---------------AQGYMMFYVQKMLY 562 (572)
Q Consensus 515 ~~~GHY~ayvr~--~~~W~~~dD~~V~~v~~~~v~~---------------~~aYlLfY~r~~~~ 562 (572)
+++|||+||+|. +++||+|||+.|+++++++|.. .+||||||+|++..
T Consensus 253 ~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~~ 317 (353)
T 1nb8_A 253 NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL 317 (353)
T ss_dssp TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTTH
T ss_pred CCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECchh
Confidence 999999999985 7899999999999999988863 58999999998753
No 8
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=1.3e-63 Score=523.88 Aligned_cols=338 Identities=20% Similarity=0.306 Sum_probs=263.5
Q ss_pred CCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHH
Q 008267 195 PRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYS 274 (572)
Q Consensus 195 ~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~ 274 (572)
..+.+||.|+|||||||||||+|+++|+||++|+........+. ......++.++|+.||..|+.+. ..++|..|+..
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~ 88 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASG-EMASAQYITAALRDLFDSMDKTS-SSIPPIILLQF 88 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC-------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCC-CCCcccHHHHHHHHHHHHHhcCC-CcCChHHHHHH
Confidence 45679999999999999999999999999999987544311111 11235689999999999999865 78999999999
Q ss_pred HHHhcCCCc------ccccCchHHHHHHHHHHHHHHhhhccCCCCCC----------CCCcccccccccceEEeeEEEeC
Q 008267 275 WWRHASNLA------SYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQ----------GNGDCCIAHRVFSGILRSDVMCM 338 (572)
Q Consensus 275 l~~~~~~f~------~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~----------~~~~~~~i~~~F~g~l~s~i~C~ 338 (572)
++...+.|. +++||||||||.+||+.|++++.......... .....++|+++|+|++.+.++|.
T Consensus 89 l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~ 168 (404)
T 2ayn_A 89 LHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCT 168 (404)
T ss_dssp HHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEES
T ss_pred HHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEec
Confidence 999999887 58999999999999999999875432111000 01123689999999999999999
Q ss_pred cCCCee--eeeeCCeeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccc
Q 008267 339 ACGFTS--TTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQ 416 (572)
Q Consensus 339 ~C~~~s--~~~e~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~ 416 (572)
.|++++ .+.|+|++|+|+|+.. ..+|++||+.|+. |.+. +.|+
T Consensus 169 ~C~~~s~s~~~e~f~~Lsl~i~~~------------------------------~~~l~~~L~~~~~-e~l~----~~c~ 213 (404)
T 2ayn_A 169 ESEEEEVTKGKENQLQLSCFINQE------------------------------VKYLFTGLKLRLQ-EEIT----KQSP 213 (404)
T ss_dssp SSCCCCCBCCEEEESSEEEECSSS------------------------------CCBHHHHHHHTTE-ECCC----CEET
T ss_pred CCCCccCceeeccCceEEeecCCC------------------------------cccHHHHHHHhcc-ccee----ecch
Confidence 999995 7999999999999853 2489999999986 4454 7899
Q ss_pred cccccceeEEEEEeecCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCC--ccCCCCC---
Q 008267 417 QCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNR--FFPFDGD--- 491 (572)
Q Consensus 417 ~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~--~~~~~~~--- 491 (572)
+|+..+.+.|+..|.++|+||+|||+||.++...+...|+.+.|.||..|||.+|+...........+ .......
T Consensus 214 ~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (404)
T 2ayn_A 214 TLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVN 293 (404)
T ss_dssp TTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----
T ss_pred hhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccch
Confidence 99999999999999999999999999999997556789999999999999999999865321100000 0000000
Q ss_pred -----------------------CCCCCCCCCccEEEEEEEeeeCC-CCCCcEEEEEEe-CCcEEEEcCcceeeeCcccc
Q 008267 492 -----------------------ESNTLNEPSSEFELFAVVTHTGK-LDAGHYVTYLRL-SNKWYKCDDAWITEVNENTV 546 (572)
Q Consensus 492 -----------------------~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~ayvr~-~~~W~~~dD~~V~~v~~~~v 546 (572)
..+........|+|+|||+|.|. +++|||+||+|. +++||+|||+.|+++++++|
T Consensus 294 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v 373 (404)
T 2ayn_A 294 QQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDI 373 (404)
T ss_dssp ------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHH
T ss_pred hhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHH
Confidence 00011234579999999999996 999999999998 99999999999999999999
Q ss_pred cCCc-------eeEEEEEEecccccccccc
Q 008267 547 RAAQ-------GYMMFYVQKMLYYKASEKQ 569 (572)
Q Consensus 547 ~~~~-------aYlLfY~r~~~~~~~~~~~ 569 (572)
+... ||||||+|+++...+...+
T Consensus 374 ~~~~~g~~~~~aYiLfY~r~~~~~~~~~~~ 403 (404)
T 2ayn_A 374 LRLSGGGDWHIAYVLLYGPRRVEIMEEESE 403 (404)
T ss_dssp GGGGSSSSSCEEEEEEEECC----------
T ss_pred HhhhCCCCCceEEEEEEEecCCCCCCCCCC
Confidence 8766 9999999999877665543
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=6.8e-62 Score=511.90 Aligned_cols=319 Identities=19% Similarity=0.286 Sum_probs=255.3
Q ss_pred CCCCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCC----CCcccHHHHHHHHHHHHHcCCCCccCh
Q 008267 193 DLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKN----GVRLCLACDLDTMFSAIFCGDRMPYSP 268 (572)
Q Consensus 193 ~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~----~~~~~l~~~l~~l~~~l~~~~~~~i~p 268 (572)
....+.+||.|+|||||||||||+|+++|+||++|+...... .+.... ....++.++|+.||..|+.+...+++|
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p 97 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQ-GVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLP 97 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGG-CCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECC
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhccccc-ccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCH
Confidence 345678999999999999999999999999999998754331 111100 014589999999999999988789999
Q ss_pred HHHHHHHHHhcCCCc-------ccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCC
Q 008267 269 AKFLYSWWRHASNLA-------SYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACG 341 (572)
Q Consensus 269 ~~~l~~l~~~~~~f~-------~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~ 341 (572)
..|+..++...+.|. +++||||||||.+||+.|++++.. ++|.++|+ ++.+.++|..|+
T Consensus 98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~-------------~~i~~~F~-~~~~~~~C~~C~ 163 (415)
T 1vjv_A 98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-------------KFSEDFRI-QFKTTIKDTAND 163 (415)
T ss_dssp HHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-------------HHHTTTCE-EEEEEEEETTEE
T ss_pred HHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc-------------chHHHHHH-hheEEEEECCCC
Confidence 999999999999998 899999999999999999998754 36899999 999999999999
Q ss_pred Cee--eeeeCCeeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCcccccccc
Q 008267 342 FTS--TTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQ 419 (572)
Q Consensus 342 ~~s--~~~e~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~ 419 (572)
+++ .+.|+|++|+|+|+.. ..+|++||+.|+.. .+. +.|+.|+
T Consensus 164 ~~s~s~~~e~f~~Lsl~i~~~------------------------------~~~l~~~L~~~~~e-~i~----~~c~~c~ 208 (415)
T 1vjv_A 164 NDITVKENESDSKLQCHISGT------------------------------TNFMRNGLLEGLNE-KIE----KRSDLTG 208 (415)
T ss_dssp EEEEEECCCEESCEEECCCTT------------------------------CCBHHHHHHHHHEE-C-------------
T ss_pred CCccccccccceeeeeccccc------------------------------cchHHHHHHHHhhh-hhh----hcccccC
Confidence 997 5999999999999863 24899999999874 454 7899999
Q ss_pred ccceeEEEEEeecCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhcc----------------ccC-
Q 008267 420 VRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRS----------------RFG- 482 (572)
Q Consensus 420 ~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~----------------~~~- 482 (572)
..+.+.|+.+|.++|+||+|||+||.++...+...|+.+.|.||..|||.+|+....... +..
T Consensus 209 ~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~ 288 (415)
T 1vjv_A 209 ANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKER 288 (415)
T ss_dssp CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhh
Confidence 999999999999999999999999999975567899999999999999999997643110 000
Q ss_pred --CCcc-C--CC--------------------------------CCCCCCCCCCCccEEEEEEEeeeCC-CCCCcEEEEE
Q 008267 483 --NRFF-P--FD--------------------------------GDESNTLNEPSSEFELFAVVTHTGK-LDAGHYVTYL 524 (572)
Q Consensus 483 --~~~~-~--~~--------------------------------~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~ayv 524 (572)
.+.. + .. .............|+|+|||+|.|. +++|||+||+
T Consensus 289 ~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~v 368 (415)
T 1vjv_A 289 EIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFI 368 (415)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEE
T ss_pred hhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEE
Confidence 0000 0 00 0000111235578999999999995 9999999999
Q ss_pred Ee---CCcEEEEcCcceeeeCcccccCCc-------eeEEEEEEecc
Q 008267 525 RL---SNKWYKCDDAWITEVNENTVRAAQ-------GYMMFYVQKML 561 (572)
Q Consensus 525 r~---~~~W~~~dD~~V~~v~~~~v~~~~-------aYlLfY~r~~~ 561 (572)
|. +++||+|||+.|+++++++|.... ||||||+|+++
T Consensus 369 r~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~l 415 (415)
T 1vjv_A 369 RDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFGL 415 (415)
T ss_dssp ECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETTC
T ss_pred eCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecCC
Confidence 98 889999999999999999998776 99999999864
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-60 Score=512.89 Aligned_cols=302 Identities=25% Similarity=0.407 Sum_probs=259.8
Q ss_pred CCCCCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHH
Q 008267 192 GDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKF 271 (572)
Q Consensus 192 ~~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~ 271 (572)
....+|++||.|+||||||||+||+|+++|+||++++...... .....++.++|+.||..|+.+. .++.|..|
T Consensus 169 ~~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l 241 (522)
T 2f1z_A 169 SKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD-KPVGTKKL 241 (522)
T ss_dssp TTTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS------SCTTTCHHHHHHHHHHHHHHCS-SCBCCTTH
T ss_pred ccccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC------CcccchHHHHHHHHHHHHhcCC-CccCcHHH
Confidence 4457899999999999999999999999999999987643211 1124579999999999999865 47889888
Q ss_pred HHHHHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCe
Q 008267 272 LYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCV 351 (572)
Q Consensus 272 l~~l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~ 351 (572)
+..+. .+.|.+++||||||||.+||+.|++++.... ..++|.++|+|++.+.++|..|++++.+.|+|+
T Consensus 242 ~~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~~---------~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~ 310 (522)
T 2f1z_A 242 TKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGTC---------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYY 310 (522)
T ss_dssp HHHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTST---------TTTHHHHHHCEEEEEEECCSSSCCCCCEEEEES
T ss_pred HhhcC--CccCCCcccccHHHHHHHHHHHHHhhccCCc---------cccchhhheeEEEEEEEEcCCCCceeeeeeeeE
Confidence 87662 4679999999999999999999999875421 124799999999999999999999999999999
Q ss_pred eeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEee
Q 008267 352 DFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIR 431 (572)
Q Consensus 352 ~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~ 431 (572)
+|+|+||. ..+|++||+.|+.+|.|+++++|.|+.|+ .+.+.|+..|.
T Consensus 311 ~LsL~i~~-------------------------------~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~ 358 (522)
T 2f1z_A 311 DIQLSIKG-------------------------------KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFL 358 (522)
T ss_dssp CEEECCTT-------------------------------CCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEES
T ss_pred EEEEEeCC-------------------------------cccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEee
Confidence 99999984 24899999999999999999999999996 57889999999
Q ss_pred cCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEee
Q 008267 432 KLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTH 511 (572)
Q Consensus 432 ~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H 511 (572)
++|+||+|||+||.++...+...|+++.|.||..|||++|+... .......|+|+|||+|
T Consensus 359 ~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~--------------------~~~~~~~Y~L~avv~H 418 (522)
T 2f1z_A 359 TLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT--------------------DPKDPANYILHAVLVH 418 (522)
T ss_dssp CCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGGGBSSC--------------------CTTSCCEEEEEEEEEE
T ss_pred cCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchhhhccc--------------------cCCCCcEEEEEEEEEe
Confidence 99999999999999997666788999999999999999998642 1224578999999999
Q ss_pred eCCCCCCcEEEEEEe--CCcEEEEcCcceeeeCcccccC---------------CceeEEEEEEecccc
Q 008267 512 TGKLDAGHYVTYLRL--SNKWYKCDDAWITEVNENTVRA---------------AQGYMMFYVQKMLYY 563 (572)
Q Consensus 512 ~G~~~~GHY~ayvr~--~~~W~~~dD~~V~~v~~~~v~~---------------~~aYlLfY~r~~~~~ 563 (572)
.|.+++|||+||+|. +++||+|||+.|+++++++|+. .+||||||+|++...
T Consensus 419 ~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~~ 487 (522)
T 2f1z_A 419 SGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLS 487 (522)
T ss_dssp ECSSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTSHH
T ss_pred cccCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECCchH
Confidence 999999999999985 7899999999999999988864 579999999987543
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.97 E-value=2.4e-31 Score=261.94 Aligned_cols=243 Identities=17% Similarity=0.244 Sum_probs=156.6
Q ss_pred ccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHH-HHHHHHHHcCCCCccChHHHHHHHH
Q 008267 198 LRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDL-DTMFSAIFCGDRMPYSPAKFLYSWW 276 (572)
Q Consensus 198 ~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~l~~~~~~~i~p~~~l~~l~ 276 (572)
..||.|+||||||||.||+|+++|.+++.++........ ......+...| ..||..|.. .++.|..|+..+.
T Consensus 9 p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~----~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~~LR 81 (374)
T 2vhf_A 9 KKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND----VEYYSETQELLRTEIVNPLRI---YGYVCATKIMKLR 81 (374)
T ss_dssp SCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS----CTTHHHHHHHHHHTTHHHHHH---TSEECHHHHHHHH
T ss_pred CccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc----chhHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHHH
Confidence 479999999999999999999999999999875322111 11123477788 889999875 7899999999998
Q ss_pred HhcCCCc-----ccccCchHHHHHHHHHHHHHH-hhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCC
Q 008267 277 RHASNLA-----SYEQQDAHEFFISMLDGIHEK-VEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPC 350 (572)
Q Consensus 277 ~~~~~f~-----~~~QqDA~Efl~~lLd~L~~~-~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f 350 (572)
+..|.|+ +++||||.|||..||..|... +.-.. ..... ....+++.++|.
T Consensus 82 ~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl-~s~~~-~~~~~~~~q~f~---------------------- 137 (374)
T 2vhf_A 82 KILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKI-RSAGQ-KVQDCYFYQIFM---------------------- 137 (374)
T ss_dssp HHHHHHC--------CCCHHHHHHHHHTTTTCCCCSEEE-EETTC-CCEEESCEECCC----------------------
T ss_pred HHhHHHhcccCCCccccCHHHHHHHHHHHHhhccccccc-ccccc-cccccHHHHHhc----------------------
Confidence 8877664 489999999999999999863 21000 00000 001123444443
Q ss_pred eeeeeccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEe
Q 008267 351 VDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSI 430 (572)
Q Consensus 351 ~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i 430 (572)
+-+... ...+++.+++.-+-.+ .. .|
T Consensus 138 -----E~~e~~----------------------------~~e~~~qL~e~nfl~~------------------gi---ki 163 (374)
T 2vhf_A 138 -----EKNEKV----------------------------GVPTIQQLLEWSFINS------------------NL---KF 163 (374)
T ss_dssp -----CCC--C----------------------------CCCBHHHHHHHHHHHH------------------TE---EE
T ss_pred -----Cccccc----------------------------CCcHHHHhhhHHHHHc------------------CC---ee
Confidence 000000 1235555543222111 12 29
Q ss_pred ecCCceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccc------------------cCC-C-c-----
Q 008267 431 RKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSR------------------FGN-R-F----- 485 (572)
Q Consensus 431 ~~lP~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~------------------~~~-~-~----- 485 (572)
+++|++|+||+.|| +...||-..|.||.+||+.++++.+..... ... . .
T Consensus 164 srLP~yLtVq~vRF------gKkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~ 237 (374)
T 2vhf_A 164 AEAPSCLIIQMPRF------GKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKT 237 (374)
T ss_dssp SSCCSEEEEECCCC------SSSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHH
T ss_pred ecCCcceEEeeecc------CccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccch
Confidence 99999999999999 346799999999999999999987652200 000 0 0
Q ss_pred --------cCCCCCC--------------CCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEe---CCcEEEEcC
Q 008267 486 --------FPFDGDE--------------SNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRL---SNKWYKCDD 535 (572)
Q Consensus 486 --------~~~~~~~--------------~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~---~~~W~~~dD 535 (572)
....... .......+..|+|+|||+ +++|||+||||. +++|+.||-
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 238 CNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp HHHHHTTSGGGTTCCCEECCC----------------CCEEEEEEEE----EETTEEEEEEECSSSTTCEEEEET
T ss_pred hhhhhhhhhhhhcccccccccCccccccccccCCCCceeEEEEEEEE----ccCCceEEEEEecCCCCCeEEEec
Confidence 0000000 001112346899999999 899999999996 689999974
No 12
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.89 E-value=3.8e-24 Score=175.74 Aligned_cols=83 Identities=19% Similarity=0.432 Sum_probs=76.6
Q ss_pred CCcccCCCCCCCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCceeeccCCceeeCCchhhHHhhh
Q 008267 63 VPRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVVLA 142 (572)
Q Consensus 63 ~~~C~~C~~~~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~~~C~~c~~~v~~~~~~~~~~~~ 142 (572)
.+.|++|+ ...++|+||+||++||| |+.++||+.|+ ++++||++|+++++++|||.|++||+++++++++..+
T Consensus 24 ~~~C~~C~--~~~~~W~CL~CG~vgCg-r~~~~HA~~H~----~~t~H~~~~~l~~~~vwCy~cd~~V~~~~L~d~~~~~ 96 (109)
T 3c5k_A 24 TQPCGDCG--TIQENWVCLSCYQVYCG-RYINGHMLQHH----GNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVKNIA 96 (109)
T ss_dssp TCCCTTTC--CCSSEEEETTTCCEEEC-TTTTCHHHHHH----HHHCCCEEEETTTCCEEETTTTEEBCCGGGHHHHHHH
T ss_pred CCcCcccc--CCCCeeeeeecCccccC-CCcChHHHHHh----cccCCCEEEECCCCCEEECCCCCEEecccccChHHHH
Confidence 36799996 45789999999999999 78899999999 7889999999999999999999999999999999999
Q ss_pred ceeccccCCC
Q 008267 143 HTTSIIQSSK 152 (572)
Q Consensus 143 ~~~~~~~~~~ 152 (572)
|+.+||+++.
T Consensus 97 hl~~fg~~~~ 106 (109)
T 3c5k_A 97 HQNKFGEDMP 106 (109)
T ss_dssp HHHHHCSCCS
T ss_pred HHHHhCCCCC
Confidence 9999998764
No 13
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.87 E-value=4.9e-23 Score=174.01 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=72.4
Q ss_pred CCcccCCCCCCCCCcEEecccCccccCCCC-----CCchhhhhccCCCCCCCceEEEEcCC-----CceeeccCCceeeC
Q 008267 63 VPRCGVCGDSSCPRLYACMACAAVSCHVPP-----HSSHVAIHATKTSSACSHEIAVDVDR-----AELFCCACRDQVYD 132 (572)
Q Consensus 63 ~~~C~~C~~~~~~~~~~Cl~C~~~~c~~~~-----~~~h~~~H~~~~~~~~~H~~~~~~~~-----~~~~C~~c~~~v~~ 132 (572)
.++|++|+ ...+||+||+||+|||||.. +++||+.|| .+++|||+|++++ ++||||.||+||+|
T Consensus 34 ~~~C~~C~--~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~----~~t~H~l~v~l~t~~~~~~~vwcY~cd~~V~d 107 (129)
T 2g45_A 34 GWKCSKCD--MRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHY----RETGYPLAVKLGTITPDGADVYSYDEDDMVLD 107 (129)
T ss_dssp BCCCSSSS--CCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHH----HHHCCCEEEETTCCBTTBCCEEETTTTEEEEC
T ss_pred CCcCcccc--CcCceEEeccCCccccCccccCCCCcCcHHHHHh----hhcCCCEEEECCCCCCCCCeEEECCCCCEeEC
Confidence 47899996 45799999999999999533 489999999 7889999999998 69999999999999
Q ss_pred CchhhHHhhhceeccccCCChhhhhh
Q 008267 133 RDFDAAVVLAHTTSIIQSSKPENLRK 158 (572)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (572)
+.|. .|+.+||+++....+++
T Consensus 108 p~L~-----~hl~~fgi~~~~~~kte 128 (129)
T 2g45_A 108 PSLA-----EHLSHFGIDMLKMQKTD 128 (129)
T ss_dssp TTHH-----HHHHTTTCCTTTCCCC-
T ss_pred ccHH-----HHHHHHCCChhhhhccC
Confidence 9984 67888999887654443
No 14
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.83 E-value=1.3e-21 Score=157.94 Aligned_cols=66 Identities=30% Similarity=0.748 Sum_probs=59.8
Q ss_pred CcccCCCCCCCCCcEEecc--cCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCceeeccCCcee-eCCch
Q 008267 64 PRCGVCGDSSCPRLYACMA--CAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQV-YDRDF 135 (572)
Q Consensus 64 ~~C~~C~~~~~~~~~~Cl~--C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~~~C~~c~~~v-~~~~~ 135 (572)
++|++|+ ....++|+||+ ||++||| ++.++||+.|+ ++++|+|+|++++++||||.|+++| .|+.|
T Consensus 26 ~~C~~C~-~~~~~lw~CL~~~Cg~vgCg-r~~~~Ha~~H~----~~t~H~~~~~l~~~~vwCy~cdd~V~~d~~L 94 (97)
T 2uzg_A 26 GTCQDCK-VQGPNLWACLENRCSYVGCG-ESQVDHSTIHS----QETKHYLTVNLTTLRVWCYACSKEVFLDRKL 94 (97)
T ss_dssp TCCSSSC-CCCSSCEEECCTTCCCEECC-TTTTCHHHHHH----HHTTCCEEEETTTTEEEETTTTEEECCCSCC
T ss_pred CcCcCcC-CCCCCceeeecccCCCcccC-CCcChHHHHHh----hhcCCcEEEECCCCCEEECCCCcEeecCccc
Confidence 7899995 45678999999 9999999 58899999999 7889999999999999999999999 47766
No 15
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.83 E-value=2.3e-21 Score=155.28 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=58.1
Q ss_pred CCcccCCCCCC--CCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcC--CCceeeccCCceeeCCc
Q 008267 63 VPRCGVCGDSS--CPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVD--RAELFCCACRDQVYDRD 134 (572)
Q Consensus 63 ~~~C~~C~~~~--~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~--~~~~~C~~c~~~v~~~~ 134 (572)
.++|.+|+... ..+||+||+||+||||+.++++||++|| ++++|||+++++ +.++|||.||+||.|++
T Consensus 18 ~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~----~~t~Hpl~~S~~~~~~~vwcY~cd~~V~~p~ 89 (102)
T 2ida_A 18 ALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHF----HATGHPIIEGYDPPEGWGWCYVDEVMFDLSD 89 (102)
T ss_dssp SSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHH----HHHCCCEEEESSSCSCEEEETTTTEEEECTT
T ss_pred CCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHH----hccCCCEEEEEecCCCCEEEcCCCcEEECcc
Confidence 37899996321 1389999999999999666999999999 788999999886 57899999999998875
No 16
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.81 E-value=7.6e-21 Score=160.64 Aligned_cols=74 Identities=18% Similarity=0.452 Sum_probs=60.5
Q ss_pred CcccCCCCC------------CCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCceeeccCCceee
Q 008267 64 PRCGVCGDS------------SCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVY 131 (572)
Q Consensus 64 ~~C~~C~~~------------~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~~~C~~c~~~v~ 131 (572)
+.|.+|... ...+||+||+||++|||+..+++||+.||++++ .++|||+|+++++.||||.|++||+
T Consensus 29 ~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~~-~t~H~l~~~l~t~~vwCY~cd~~V~ 107 (126)
T 2i50_A 29 NICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPR-SEPHCLVLSLDNWSVWCYVCDNEVQ 107 (126)
T ss_dssp SSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSCC-SSCCCEEEETTTCCEEETTTTEEEC
T ss_pred CcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCcC-CCCCcEEEECCCCeEEeCCCCcEEE
Confidence 678888531 158899999999999996557899999994210 2899999999999999999999999
Q ss_pred CCchhhH
Q 008267 132 DRDFDAA 138 (572)
Q Consensus 132 ~~~~~~~ 138 (572)
|+....+
T Consensus 108 ~~~~~~l 114 (126)
T 2i50_A 108 YCSSNQL 114 (126)
T ss_dssp CCTTSHH
T ss_pred cCcchhH
Confidence 8875433
No 17
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=97.91 E-value=0.0002 Score=64.93 Aligned_cols=70 Identities=20% Similarity=0.204 Sum_probs=48.6
Q ss_pred CcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHHH
Q 008267 196 RGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSW 275 (572)
Q Consensus 196 ~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l 275 (572)
.|++=|.=.-|+||+||++-+|-++... ++.++.++..+ +|..|...+
T Consensus 11 nG~~vLkq~dNNCwVNaa~l~LQ~~~~~---------------------------~~~aw~~f~~G-----d~~~fV~~~ 58 (211)
T 3mp2_A 11 NGKIILKQGDNNCWINACCYQLQAFDFF---------------------------NNEAWEKFKKG-----DVMDFVNLC 58 (211)
T ss_dssp TTEEEECCCTTCHHHHHHHHHHTTCTTC---------------------------CCHHHHHHTTT-----CCHHHHHHH
T ss_pred CCEEEEEccCCCcHHHHHHHHHHhcChh---------------------------HHHHHHHHhCC-----ChHHHHHHH
Confidence 4666677778999999999888554443 23355555555 566777766
Q ss_pred HHhcCCCcccccCchHHHHHHHH
Q 008267 276 WRHASNLASYEQQDAHEFFISML 298 (572)
Q Consensus 276 ~~~~~~f~~~~QqDA~Efl~~lL 298 (572)
.... ...-++--||+++|..|+
T Consensus 59 Ya~~-~~~~G~~gDa~~~L~~Ll 80 (211)
T 3mp2_A 59 YAAT-TLARGHSGDAEYLLELML 80 (211)
T ss_dssp HHHH-TCCTTSCCCHHHHHHHHH
T ss_pred HHHc-CCCCCCCcCHHHHHHHHH
Confidence 4443 445578899999999998
No 18
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=97.22 E-value=0.0092 Score=57.74 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=50.7
Q ss_pred CCcccccccCCchhhHHHHHHHHhCChh-HHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHH
Q 008267 195 PRGLRGLNNLGNTCFMNSVLQALFHTPP-LRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLY 273 (572)
Q Consensus 195 ~~g~~GL~NlGNTCY~NSvLQ~L~~~p~-fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~ 273 (572)
-.|++=|.=.-|+||+||++-+|-++.. |+. -.|+++..++..| +|..|..
T Consensus 99 ~~G~~vLkq~dNNCwVNaa~l~LQ~~~~~F~~-----------------------~~l~~aw~~f~~G-----d~~~FVa 150 (315)
T 2fe8_A 99 VGGLTSIKWADNNCYLSSVLLALQQLEVKFNA-----------------------PALQEAYYRARAG-----DAANFCA 150 (315)
T ss_dssp ETTEECCCCCTTTHHHHHHHHHHHTSCCCBSS-----------------------HHHHHHHHHHHHT-----CCHHHHH
T ss_pred ECCEEEEeecCCccHHHHHHHHHHhcCCccCC-----------------------HHHHHHHHHHhCC-----ChHHHHH
Confidence 3466667777899999999987754432 111 1456666666667 5777887
Q ss_pred HHHHhcCCCcccccCchHHHHHHH
Q 008267 274 SWWRHASNLASYEQQDAHEFFISM 297 (572)
Q Consensus 274 ~l~~~~~~f~~~~QqDA~Efl~~l 297 (572)
.+.... ...-++--||.++|..|
T Consensus 151 ~~Ya~~-~~~~G~~gDa~~~L~~L 173 (315)
T 2fe8_A 151 LILAYS-NKTVGELGDVRETMTHL 173 (315)
T ss_dssp HHHHHT-TCCTTSCCCHHHHHHHH
T ss_pred HHHHhc-CCCCCCCccHHHHHHHH
Confidence 775444 33457889999999888
No 19
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=84.02 E-value=1.2 Score=31.89 Aligned_cols=29 Identities=21% Similarity=0.495 Sum_probs=21.0
Q ss_pred CCCCcccCCCCCCCCCcEEecccCccccCC
Q 008267 61 SEVPRCGVCGDSSCPRLYACMACAAVSCHV 90 (572)
Q Consensus 61 ~~~~~C~~C~~~~~~~~~~Cl~C~~~~c~~ 90 (572)
....+|..|....+.--+.| .||.++|+.
T Consensus 13 ~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVMGFKC-KCGSTFCGS 41 (64)
T ss_dssp CCSCSCTTTCCCCTTSCEEC-TTSCEECSS
T ss_pred CcCCcChhhCCcccccCeEe-ecCCEeccc
Confidence 34478999964333335899 899999994
No 20
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=82.79 E-value=1.2 Score=32.68 Aligned_cols=30 Identities=23% Similarity=0.582 Sum_probs=21.8
Q ss_pred CCCCCcccCCCCCCCCCcEEecccCccccCC
Q 008267 60 SSEVPRCGVCGDSSCPRLYACMACAAVSCHV 90 (572)
Q Consensus 60 ~~~~~~C~~C~~~~~~~~~~Cl~C~~~~c~~ 90 (572)
+....+|..|......--+.| .||.++|+.
T Consensus 22 k~~~~RC~~C~kkvgL~~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVTGFKC-RCGSTFCGT 51 (74)
T ss_dssp TCCCCBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred cccCccchhhcCcccccceEe-ccCCEeccc
Confidence 444578999964333335899 899999993
No 21
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=82.62 E-value=1.5 Score=31.28 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=20.9
Q ss_pred CCCCcccCCCCCCCCCcEEecccCccccCC
Q 008267 61 SEVPRCGVCGDSSCPRLYACMACAAVSCHV 90 (572)
Q Consensus 61 ~~~~~C~~C~~~~~~~~~~Cl~C~~~~c~~ 90 (572)
....+|..|....+.--+.| .||..+|+.
T Consensus 13 ~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMC-RCGTTFCGS 41 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred CcCCcChhhCCccCccCEEe-ecCCEeccc
Confidence 34478999964333335899 799999993
No 22
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=79.47 E-value=0.9 Score=37.71 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=27.0
Q ss_pred EEEEeeeCCCCCCcEEEEEEeCCcEEEEcCcceeeeCc
Q 008267 506 FAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNE 543 (572)
Q Consensus 506 ~avV~H~G~~~~GHY~ayvr~~~~W~~~dD~~V~~v~~ 543 (572)
.|-|.-.|. +|-+-++-.++.||.+||+.+.+.++
T Consensus 110 hAgIflkg~---eHAVFa~~TS~GWyaiDDe~fypwtP 144 (167)
T 1qmy_A 110 HAGIFLKGQ---EHAVFACVTSNGWYAIDDEDFYPWTP 144 (167)
T ss_dssp EEEEEEETT---TEEEEEECCTTSSEEEETTEEEECCC
T ss_pred hhheeecCC---CceEEEEEccCceEEecccccccCCC
Confidence 444444444 79888888899999999999998765
No 23
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.80 E-value=1.2 Score=32.10 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=20.5
Q ss_pred CCCCCcccCCCCCCCCC---cEEecccCccccCC
Q 008267 60 SSEVPRCGVCGDSSCPR---LYACMACAAVSCHV 90 (572)
Q Consensus 60 ~~~~~~C~~C~~~~~~~---~~~Cl~C~~~~c~~ 90 (572)
+....+|..|....+.. .+.| .||.++|+.
T Consensus 12 ~~~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLELVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp CSCTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred CccCCcchhhCCeecccccCceEe-cCCCEehhc
Confidence 34457899996432222 1689 999999993
No 24
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=71.45 E-value=2.5 Score=47.11 Aligned_cols=61 Identities=25% Similarity=0.542 Sum_probs=45.5
Q ss_pred CcccCCCCCCCCCcEEecccCccccCCC--CCCchhhhhccCCCCCCCc-eEEEE----cCCCceeeccCCc
Q 008267 64 PRCGVCGDSSCPRLYACMACAAVSCHVP--PHSSHVAIHATKTSSACSH-EIAVD----VDRAELFCCACRD 128 (572)
Q Consensus 64 ~~C~~C~~~~~~~~~~Cl~C~~~~c~~~--~~~~h~~~H~~~~~~~~~H-~~~~~----~~~~~~~C~~c~~ 128 (572)
..|.=|+...+..+-.|++|+.-+|-++ ..++|...|.. .+.| -+.+. ++.-.+-||.|+.
T Consensus 12 ~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~----~~~~~~~~l~~~~~~~~~~~~c~~c~~ 79 (802)
T 2xzl_A 12 NSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLV----LSHHNVVSLHPDSDLGDTVLECYNCGR 79 (802)
T ss_dssp CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHH----HHTCCCEEECTTSSSCSCBCCCSSSCC
T ss_pred hhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHH----HccCCeeeccCCCCCCCceeEeecCCC
Confidence 6799998877889999999999999643 34589999994 4445 33333 2445667999974
No 25
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=62.61 E-value=8.1 Score=29.30 Aligned_cols=29 Identities=21% Similarity=0.611 Sum_probs=20.9
Q ss_pred CCCCcccCCCCCCCC-CcEEecccCccccCC
Q 008267 61 SEVPRCGVCGDSSCP-RLYACMACAAVSCHV 90 (572)
Q Consensus 61 ~~~~~C~~C~~~~~~-~~~~Cl~C~~~~c~~ 90 (572)
....+|..|+...+. .-+.| .||.++|+.
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~C-rCg~~FC~~ 52 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFEC-RCGNNFCAS 52 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEEC-TTCCEECTT
T ss_pred ccCccchhhCCeecccCCeEc-CCCCEeccc
Confidence 334789999743333 36899 599999993
No 26
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=57.37 E-value=5.9 Score=44.02 Aligned_cols=61 Identities=20% Similarity=0.367 Sum_probs=44.7
Q ss_pred CcccCCCCCCCCCcEEecccCccccCCC--CCCchhhhhccCCCCCCCc-eEEEEc----CCCceeeccCCc
Q 008267 64 PRCGVCGDSSCPRLYACMACAAVSCHVP--PHSSHVAIHATKTSSACSH-EIAVDV----DRAELFCCACRD 128 (572)
Q Consensus 64 ~~C~~C~~~~~~~~~~Cl~C~~~~c~~~--~~~~h~~~H~~~~~~~~~H-~~~~~~----~~~~~~C~~c~~ 128 (572)
..|.=|+...+..+-.|+.|+.-+|-++ ..++|...|.. .+.| -+.+.- +.-.+=||.|+.
T Consensus 7 ~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~----~~~~~~~~~~~~~~~~~~~~ec~~c~~ 74 (800)
T 2wjy_A 7 HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLV----RAKCKEVTLHKDGPLGETVLECYNCGC 74 (800)
T ss_dssp TSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHH----HHTCCCEEECTTSTTCSCBCCCTTTCC
T ss_pred hhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHH----HccCceEecCCCCCCCCceEEEeccCC
Confidence 6799998777788999999999999743 34589999984 4445 333332 344566999974
No 27
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=55.19 E-value=6.3 Score=22.41 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=12.4
Q ss_pred EEEEEeCCcEEEEcC
Q 008267 521 VTYLRLSNKWYKCDD 535 (572)
Q Consensus 521 ~ayvr~~~~W~~~dD 535 (572)
.+|||.+|.|...++
T Consensus 11 ~~Yvr~dg~WV~l~t 25 (27)
T 2ww6_A 11 QAYVRKFGEWVLLST 25 (27)
T ss_dssp CEEEEETTEEEEGGG
T ss_pred ceeEEEcCeEEEccc
Confidence 378999999998765
No 28
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=54.28 E-value=10 Score=27.82 Aligned_cols=28 Identities=21% Similarity=0.591 Sum_probs=20.3
Q ss_pred CCCcccCCCCCCCCCcEEecccCccccCC
Q 008267 62 EVPRCGVCGDSSCPRLYACMACAAVSCHV 90 (572)
Q Consensus 62 ~~~~C~~C~~~~~~~~~~Cl~C~~~~c~~ 90 (572)
...+|..|....+.--+.|- ||.++|+.
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGL 51 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSS
T ss_pred cCCcChhhCCcccccCeecC-CCCEechh
Confidence 34689999643233348899 99999993
No 29
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=50.86 E-value=9.1 Score=42.85 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=33.9
Q ss_pred CcccCCCCC--CCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEc
Q 008267 64 PRCGVCGDS--SCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDV 116 (572)
Q Consensus 64 ~~C~~C~~~--~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~ 116 (572)
-.|.-|..+ ...-|++||.|..-+|. .|+..|+ ..++|++++++
T Consensus 47 ~eC~~~f~~~~~~~gl~vcl~~f~~~~~-----~~~~~~~----~~~~~~~~l~i 92 (854)
T 3ihp_A 47 DECAFSFDTPESEGGLYICMNTFLGFGK-----QYVERHF----NKTGQRVYLHL 92 (854)
T ss_dssp SSCSSSSCCTTSTTCEEEETTTCCEECT-----TTHHHHH----HHHCCCEEEEE
T ss_pred ccCceecCCCCCCCCeEEcccccccccH-----HHHHHHH----hccCCceEEEE
Confidence 457777522 23459999999888876 6999999 67789999876
No 30
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=48.56 E-value=16 Score=32.45 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=37.9
Q ss_pred EEEEEeeeCCCCCCcEEEEEEeCCcEEEEcCcceeeeCcccc--------cCCceeEEEEEEecc
Q 008267 505 LFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENTV--------RAAQGYMMFYVQKML 561 (572)
Q Consensus 505 L~avV~H~G~~~~GHY~ayvr~~~~W~~~dD~~V~~v~~~~v--------~~~~aYlLfY~r~~~ 561 (572)
..|+|++... |++|..|-++.||-+|=..-.+.-..+. +..++|=+|-++.++
T Consensus 110 ~~~FI~N~~~----HWfaiRkigg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~g~l 170 (191)
T 3o65_A 110 ERSFICNYKQ----HWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDL 170 (191)
T ss_dssp CCEEEEEESS----CEEEEEEETTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEESCC
T ss_pred hhhhhhcccc----ceeeEEecCCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3589999865 9999999999999998765433222111 235789999888644
No 31
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=45.60 E-value=28 Score=29.19 Aligned_cols=36 Identities=8% Similarity=0.241 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccce------EEeeEEEeCcCCCeeee
Q 008267 291 HEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSG------ILRSDVMCMACGFTSTT 346 (572)
Q Consensus 291 ~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g------~l~s~i~C~~C~~~s~~ 346 (572)
-|.|.+.++.+.+. .+|.| ...-...|..||+....
T Consensus 41 ~e~l~faf~~~~~g--------------------t~~e~A~L~i~~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 41 EDIVKFAMEQLFAG--------------------TIAEGAEIEFVEEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp HHHHHHHHHHHHTT--------------------STTTTCEEEEEEECCEEEETTTCCEEEG
T ss_pred HHHHHHHHHHHHcC--------------------CcccCCEEEEEecCCcEECCCCCCEEec
Confidence 46677788887652 12444 44557899999998654
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=39.94 E-value=13 Score=29.17 Aligned_cols=47 Identities=23% Similarity=0.459 Sum_probs=32.2
Q ss_pred CcccCCCCCCCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCceeeccCCceee
Q 008267 64 PRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVY 131 (572)
Q Consensus 64 ~~C~~C~~~~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~~~C~~c~~~v~ 131 (572)
..|..|. ....+...|+.|||++|. .-...++. .. ...|-.|...+.
T Consensus 23 ~~C~IC~-~~~~~p~~~~~CgH~FC~-----~Ci~~~~~----~~-----------~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICM-EKLRDARLCPHCSKLCCF-----SCIRRWLT----EQ-----------RAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTC-SBCSSEEECTTTCCEEEH-----HHHHHHHH----HT-----------CSBCTTTCCBCC
T ss_pred CCCccCC-ccccCccccCCCCChhhH-----HHHHHHHH----HC-----------cCCCCCCCCcCC
Confidence 4699994 455677788999999998 34444541 11 146888887764
No 33
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=35.57 E-value=29 Score=24.16 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=19.9
Q ss_pred CCCCCcccCCCCC-----CCCCcEEecccCccccC
Q 008267 60 SSEVPRCGVCGDS-----SCPRLYACMACAAVSCH 89 (572)
Q Consensus 60 ~~~~~~C~~C~~~-----~~~~~~~Cl~C~~~~c~ 89 (572)
.+....|..|+.. ....-++|..||.+.=.
T Consensus 8 ll~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e 42 (58)
T 1dl6_A 8 ALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGD 42 (58)
T ss_dssp CCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECC
T ss_pred ccccccCcCCCCCceeEeCCCCeEEeCCCCCEEec
Confidence 4445679999631 12347899999998643
No 34
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=33.39 E-value=1.1e+02 Score=24.17 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=41.3
Q ss_pred cEEEEEEEeee---CCC-C------CCcEEEEEEeCCcEEEEcCcceeeeCcccccCCceeEEEEEEe
Q 008267 502 EFELFAVVTHT---GKL-D------AGHYVTYLRLSNKWYKCDDAWITEVNENTVRAAQGYMMFYVQK 559 (572)
Q Consensus 502 ~Y~L~avV~H~---G~~-~------~GHY~ayvr~~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r~ 559 (572)
..++...|.|- |-. + -.||+..+. ..+||..|..++.....+.++|+-|+-+-
T Consensus 19 ~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~-----~~~ng~~v~~~~~~~~iS~NP~~~F~~~~ 81 (108)
T 2oxg_Z 19 TVTVKALISHKMESGQRKDADGKLIPRSIINRFT-----CELNGVNVVDVAIDPAVSTNPYFEFDAKV 81 (108)
T ss_dssp EEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEE-----EEETTEEEEEEEECTTBCSSCEEEEEEEE
T ss_pred CEEEEEEeECCCccccccCcCCCccchHheEEEE-----EEECCEEEEEEEeCCccccCCeEEEEEec
Confidence 56788889983 331 1 268888877 34899999999999889999999998764
No 35
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.96 E-value=6.1 Score=26.84 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=18.9
Q ss_pred CcccCCCCCCCCCcEEecccCcc
Q 008267 64 PRCGVCGDSSCPRLYACMACAAV 86 (572)
Q Consensus 64 ~~C~~C~~~~~~~~~~Cl~C~~~ 86 (572)
..|..|+...+...|-|-.||+.
T Consensus 15 ~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCEECTTCSSCSSSSSC
T ss_pred ccCCCCCCcCCCCceecCCCCCc
Confidence 56899976567789999999987
No 36
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=30.43 E-value=39 Score=28.12 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.7
Q ss_pred cccccccCCchhhHHHHHHHHh
Q 008267 197 GLRGLNNLGNTCFMNSVLQALF 218 (572)
Q Consensus 197 g~~GL~NlGNTCY~NSvLQ~L~ 218 (572)
.+.|+.|.-++|++|++||+..
T Consensus 12 ~fys~pN~hdncWLNtilQLfr 33 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFR 33 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHH
T ss_pred ccccCCCCCcchHHHHHHHHHH
Confidence 4789999999999999999874
No 37
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.63 E-value=38 Score=22.47 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=20.3
Q ss_pred CCCCCcccCCCCCCCCCcEEecccCcc
Q 008267 60 SSEVPRCGVCGDSSCPRLYACMACAAV 86 (572)
Q Consensus 60 ~~~~~~C~~C~~~~~~~~~~Cl~C~~~ 86 (572)
+...|.|..|...+....-.|+.|+.-
T Consensus 8 ~~gsW~C~~C~v~N~a~~~kC~aC~~p 34 (47)
T 2ebr_A 8 PEGSWDCELCLVQNKADSTKCLACESA 34 (47)
T ss_dssp CCSSCCCSSSCCCCCSSCSBCSSSCCB
T ss_pred CCCeeECCeeecCCcCCcceecCcCCC
Confidence 445699999976666667788888765
No 38
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.09 E-value=63 Score=23.65 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=29.2
Q ss_pred CCcccCCCCCCCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCceeeccCCceee
Q 008267 63 VPRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVY 131 (572)
Q Consensus 63 ~~~C~~C~~~~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~~~C~~c~~~v~ 131 (572)
...|..|. ....+.. -+.|||++|. .-...++ .. ...|-.|...+.
T Consensus 15 ~~~C~IC~-~~~~~p~-~~~CgH~fC~-----~Ci~~~~----~~------------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICR-QAFQNPV-VTKCRHYFCE-----SCALEHF----RA------------TPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSC-SBCCSEE-ECTTSCEEEH-----HHHHHHH----HH------------CSBCSSSCCBCC
T ss_pred CCCCcCCC-chhcCee-EccCCCHhHH-----HHHHHHH----HC------------CCcCCCcCcccc
Confidence 46799995 3334433 3899999997 3444444 11 235888887764
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.82 E-value=47 Score=22.28 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=16.5
Q ss_pred CCcccCCCCCCCCCcEEecccCccccC
Q 008267 63 VPRCGVCGDSSCPRLYACMACAAVSCH 89 (572)
Q Consensus 63 ~~~C~~C~~~~~~~~~~Cl~C~~~~c~ 89 (572)
...|..|. ....+. +-+.|||++|.
T Consensus 15 ~~~C~IC~-~~~~~p-~~~~CgH~fC~ 39 (58)
T 2ecj_A 15 EASCSVCL-EYLKEP-VIIECGHNFCK 39 (58)
T ss_dssp CCBCSSSC-CBCSSC-CCCSSCCCCCH
T ss_pred CCCCccCC-cccCcc-EeCCCCCccCH
Confidence 46799995 332332 23789999987
No 40
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=23.73 E-value=3.4e+02 Score=23.17 Aligned_cols=30 Identities=7% Similarity=0.109 Sum_probs=20.1
Q ss_pred CCCcEEEEEE-eCCcEEEEcCcceeeeCcccc
Q 008267 516 DAGHYVTYLR-LSNKWYKCDDAWITEVNENTV 546 (572)
Q Consensus 516 ~~GHY~ayvr-~~~~W~~~dD~~V~~v~~~~v 546 (572)
.+| -+.-|- .++.|+-||+..=.+|+..++
T Consensus 129 esG-~f~dvDLse~eW~DYDEk~~~~VsI~e~ 159 (164)
T 1zso_A 129 KGK-LYYDVNLSDQNWCDYNEEHEMCVGIYNL 159 (164)
T ss_dssp TSC-EEEEECCTTSCEEEEETTTTEEEEEEEE
T ss_pred CCC-cEEeeecCCCceeccccCCCCeEEEEEE
Confidence 567 333342 457899999988777766554
No 41
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.66 E-value=56 Score=22.66 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=21.1
Q ss_pred ccCCCCCCcccCCCCCCCCCcEEecccCc
Q 008267 57 RRDSSEVPRCGVCGDSSCPRLYACMACAA 85 (572)
Q Consensus 57 ~~~~~~~~~C~~C~~~~~~~~~~Cl~C~~ 85 (572)
.+.+...|.|..|...+....-.|+.|+.
T Consensus 25 FK~~~GsWeC~~C~V~N~a~~~kC~ACet 53 (57)
T 2ebv_A 25 FKRPIGSWECSVCCVSNNAEDNKCVSCMS 53 (57)
T ss_dssp CCCCSSSCCCSSSCCCCCSSCSBCSSSCC
T ss_pred cCCCCCeeeCCeeEccCccCCceeeEcCC
Confidence 44455679999997666666778888865
No 42
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.05 E-value=99 Score=21.30 Aligned_cols=23 Identities=30% Similarity=0.703 Sum_probs=19.9
Q ss_pred CcccCCCCCCCCCcEEecccCccccC
Q 008267 64 PRCGVCGDSSCPRLYACMACAAVSCH 89 (572)
Q Consensus 64 ~~C~~C~~~~~~~~~~Cl~C~~~~c~ 89 (572)
..|.+|+ . ...|.|..|+...|.
T Consensus 13 ~~C~vC~--~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 13 VVCVICL--E-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCTTTC--S-CCSEECTTTCCEESS
T ss_pred CccCcCc--C-CCeeeCCCCCCCeeC
Confidence 4699996 3 789999999999997
Done!