Query 008268
Match_columns 572
No_of_seqs 327 out of 1352
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 21:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 6.2E-54 1.3E-58 479.6 14.1 409 62-495 100-551 (775)
2 KOG1845 MORC family ATPases [C 99.8 6.3E-21 1.4E-25 215.0 5.8 280 145-480 1-293 (775)
3 PRK05218 heat shock protein 90 99.7 9E-17 2E-21 181.2 19.8 105 87-203 14-144 (613)
4 PF13589 HATPase_c_3: Histidin 99.7 1.9E-17 4.1E-22 152.9 5.8 90 111-204 5-97 (137)
5 COG0323 MutL DNA mismatch repa 99.6 4.9E-15 1.1E-19 167.7 16.6 278 107-477 22-332 (638)
6 PRK14083 HSP90 family protein; 99.6 1.1E-14 2.4E-19 163.7 14.9 105 86-203 10-129 (601)
7 PRK00095 mutL DNA mismatch rep 99.6 3.8E-14 8.3E-19 160.4 17.9 90 107-204 21-117 (617)
8 COG0326 HtpG Molecular chapero 99.6 5.6E-14 1.2E-18 156.0 17.0 98 99-205 24-146 (623)
9 PTZ00130 heat shock protein 90 99.5 1.5E-13 3.3E-18 157.1 18.7 96 99-203 85-205 (814)
10 TIGR00585 mutl DNA mismatch re 99.5 2.6E-13 5.6E-18 141.6 15.6 87 107-201 21-114 (312)
11 PTZ00272 heat shock protein 83 99.5 2E-12 4.3E-17 147.4 19.3 97 98-203 21-141 (701)
12 KOG1979 DNA mismatch repair pr 99.2 2.1E-10 4.6E-15 125.4 12.6 90 107-204 26-122 (694)
13 COG1389 DNA topoisomerase VI, 99.0 2.1E-09 4.5E-14 115.4 10.9 94 110-204 38-140 (538)
14 PRK14868 DNA topoisomerase VI 98.8 4.6E-08 9.9E-13 111.6 12.8 94 108-203 46-148 (795)
15 PRK05559 DNA topoisomerase IV 98.7 3E-08 6.6E-13 112.9 6.7 122 71-203 5-140 (631)
16 KOG1978 DNA mismatch repair pr 98.6 3.6E-08 7.9E-13 110.3 6.5 88 108-203 20-114 (672)
17 KOG0019 Molecular chaperone (H 98.6 6.9E-08 1.5E-12 106.8 6.8 91 112-205 61-174 (656)
18 KOG0020 Endoplasmic reticulum 98.6 5.7E-08 1.2E-12 104.9 5.6 100 99-207 92-220 (785)
19 COG3290 CitA Signal transducti 98.6 8.9E-08 1.9E-12 105.4 6.9 95 104-203 424-521 (537)
20 PF02518 HATPase_c: Histidine 98.5 2.3E-07 4.9E-12 81.3 5.9 92 109-203 6-100 (111)
21 TIGR01055 parE_Gneg DNA topois 98.4 3E-07 6.6E-12 104.7 6.2 109 84-203 10-133 (625)
22 PRK14867 DNA topoisomerase VI 98.4 1E-06 2.3E-11 100.1 10.5 92 111-203 39-139 (659)
23 PRK05644 gyrB DNA gyrase subun 98.4 3.5E-07 7.5E-12 104.5 6.5 121 71-203 5-140 (638)
24 TIGR01052 top6b DNA topoisomer 98.3 1.1E-06 2.3E-11 97.2 8.0 95 108-203 28-131 (488)
25 PRK04184 DNA topoisomerase VI 98.3 9.2E-07 2E-11 98.7 7.5 95 110-204 38-142 (535)
26 COG0187 GyrB Type IIA topoisom 98.2 9.6E-06 2.1E-10 90.9 12.8 112 85-203 13-139 (635)
27 TIGR01059 gyrB DNA gyrase, B s 98.2 2E-06 4.4E-11 98.6 6.3 110 86-203 9-133 (654)
28 PRK14939 gyrB DNA gyrase subun 98.1 4.4E-06 9.6E-11 96.7 6.9 110 85-203 14-140 (756)
29 smart00433 TOP2c Topoisomerase 98.0 4.7E-06 1E-10 94.7 3.6 86 112-203 5-104 (594)
30 PRK10364 sensor protein ZraS; 98.0 1.3E-05 2.9E-10 86.9 6.9 90 108-202 348-437 (457)
31 PRK10604 sensor protein RstB; 97.8 4.7E-05 1E-09 82.5 7.5 91 108-203 319-413 (433)
32 PRK11086 sensory histidine kin 97.8 6.8E-05 1.5E-09 82.1 8.3 90 109-202 434-524 (542)
33 KOG1977 DNA mismatch repair pr 97.7 2.2E-05 4.7E-10 88.4 3.4 84 111-203 24-114 (1142)
34 PRK09303 adaptive-response sen 97.7 0.00011 2.4E-09 78.6 8.4 93 109-204 273-368 (380)
35 PRK15053 dpiB sensor histidine 97.7 0.00011 2.3E-09 81.4 8.0 89 110-202 434-528 (545)
36 TIGR02938 nifL_nitrog nitrogen 97.6 0.00011 2.3E-09 78.6 7.1 90 110-203 389-484 (494)
37 PRK11006 phoR phosphate regulo 97.6 0.0001 2.3E-09 79.4 7.0 93 108-203 317-413 (430)
38 TIGR01058 parE_Gpos DNA topois 97.6 6.8E-05 1.5E-09 85.9 5.6 111 85-203 12-137 (637)
39 PRK09470 cpxA two-component se 97.6 0.00014 3E-09 78.0 7.5 90 109-203 354-447 (461)
40 PRK11360 sensory histidine kin 97.6 0.00011 2.4E-09 80.3 6.8 89 109-202 501-590 (607)
41 smart00387 HATPase_c Histidine 97.6 0.00025 5.3E-09 59.3 7.3 89 110-201 7-98 (111)
42 cd00075 HATPase_c Histidine ki 97.6 0.00021 4.6E-09 58.7 6.6 88 111-201 3-93 (103)
43 PRK09467 envZ osmolarity senso 97.5 0.0002 4.4E-09 76.5 7.6 89 109-203 332-423 (435)
44 PLN03237 DNA topoisomerase 2; 97.5 0.00033 7.2E-09 85.5 9.8 87 110-201 79-180 (1465)
45 COG0642 BaeS Signal transducti 97.5 0.00019 4.1E-09 71.1 6.5 89 107-201 227-317 (336)
46 TIGR01386 cztS_silS_copS heavy 97.5 0.0002 4.3E-09 76.4 6.8 89 108-199 353-445 (457)
47 PRK11100 sensory histidine kin 97.4 0.00024 5.3E-09 76.0 7.0 94 107-203 367-463 (475)
48 PRK10755 sensor protein BasS/P 97.4 0.00017 3.8E-09 75.2 5.6 90 107-202 246-338 (356)
49 TIGR02916 PEP_his_kin putative 97.4 0.00017 3.6E-09 83.0 5.9 86 110-203 581-670 (679)
50 PRK11073 glnL nitrogen regulat 97.4 0.00028 6E-09 73.1 6.8 92 109-202 238-337 (348)
51 PRK10549 signal transduction h 97.4 0.00025 5.5E-09 76.3 6.5 92 109-203 353-448 (466)
52 COG4191 Signal transduction hi 97.4 0.00031 6.7E-09 78.6 6.7 89 111-204 500-592 (603)
53 PRK10815 sensor protein PhoQ; 97.3 0.00037 8.1E-09 77.2 6.5 86 110-203 380-468 (485)
54 TIGR02966 phoR_proteo phosphat 97.3 0.00058 1.3E-08 69.0 7.2 93 108-203 229-325 (333)
55 PRK13837 two-component VirA-li 97.3 0.00054 1.2E-08 80.6 7.6 88 109-202 561-664 (828)
56 PTZ00109 DNA gyrase subunit b; 97.2 0.00016 3.5E-09 84.6 2.4 119 73-203 99-272 (903)
57 PRK10490 sensor protein KdpD; 97.0 0.0009 1.9E-08 79.7 6.7 92 108-203 778-872 (895)
58 PRK10618 phosphotransfer inter 97.0 0.0014 3E-08 78.1 8.1 94 109-204 566-663 (894)
59 TIGR03785 marine_sort_HK prote 97.0 0.001 2.2E-08 77.2 6.9 92 108-202 597-692 (703)
60 PRK11107 hybrid sensory histid 97.0 0.0014 3.1E-08 76.9 7.6 94 109-204 409-509 (919)
61 PRK15347 two component system 97.0 0.0012 2.7E-08 77.5 6.8 89 108-203 513-604 (921)
62 PRK11091 aerobic respiration c 96.9 0.0014 3E-08 76.2 6.5 92 109-203 399-495 (779)
63 TIGR02956 TMAO_torS TMAO reduc 96.9 0.0022 4.7E-08 76.0 7.9 91 108-203 579-673 (968)
64 PRK09835 sensor kinase CusS; P 96.8 0.002 4.4E-08 69.6 6.6 91 108-201 375-469 (482)
65 PRK10547 chemotaxis protein Ch 96.8 0.0024 5.2E-08 73.8 7.5 90 112-203 389-513 (670)
66 PRK11466 hybrid sensory histid 96.8 0.0024 5.2E-08 75.3 7.4 89 108-203 561-652 (914)
67 PRK10337 sensor protein QseC; 96.8 0.0019 4.1E-08 69.5 5.6 86 108-202 352-440 (449)
68 PRK13557 histidine kinase; Pro 96.7 0.0032 7E-08 68.6 7.3 90 109-202 278-383 (540)
69 PRK09959 hybrid sensory histid 96.7 0.0035 7.6E-08 76.3 8.1 95 108-203 828-926 (1197)
70 PRK10841 hybrid sensory kinase 96.7 0.0037 8.1E-08 74.8 7.7 91 109-203 563-657 (924)
71 COG2205 KdpD Osmosensitive K+ 96.5 0.0044 9.5E-08 71.9 6.8 91 109-204 776-870 (890)
72 PTZ00108 DNA topoisomerase 2-l 96.5 0.0029 6.4E-08 77.6 5.7 87 111-202 60-164 (1388)
73 PLN03128 DNA topoisomerase 2; 96.3 0.0046 9.9E-08 75.0 5.7 87 110-201 54-155 (1135)
74 TIGR01925 spIIAB anti-sigma F 96.3 0.01 2.2E-07 54.0 6.7 84 111-202 42-127 (137)
75 PHA02569 39 DNA topoisomerase 96.2 0.0032 6.8E-08 72.0 3.3 83 112-201 49-150 (602)
76 PRK10600 nitrate/nitrite senso 96.2 0.0072 1.6E-07 67.9 5.9 78 108-203 469-546 (569)
77 COG4585 Signal transduction hi 95.7 0.015 3.2E-07 61.9 5.4 77 107-202 278-354 (365)
78 PRK11644 sensory histidine kin 95.6 0.016 3.5E-07 64.6 5.5 72 109-199 411-482 (495)
79 KOG0787 Dehydrogenase kinase [ 95.6 0.027 5.9E-07 60.4 6.8 89 111-201 263-368 (414)
80 PRK04069 serine-protein kinase 95.3 0.022 4.8E-07 54.1 4.7 85 111-199 45-131 (161)
81 COG3850 NarQ Signal transducti 95.2 0.029 6.2E-07 62.7 5.8 77 110-205 483-560 (574)
82 COG0643 CheA Chemotaxis protei 95.1 0.047 1E-06 63.8 7.3 91 113-205 437-565 (716)
83 PRK03660 anti-sigma F factor; 95.0 0.064 1.4E-06 49.2 6.6 84 111-202 42-127 (146)
84 PRK13560 hypothetical protein; 94.8 0.027 5.9E-07 64.6 4.4 76 112-200 715-792 (807)
85 PF13581 HATPase_c_2: Histidin 94.2 0.074 1.6E-06 47.5 4.9 78 111-197 34-113 (125)
86 COG5000 NtrY Signal transducti 94.1 0.072 1.6E-06 60.5 5.4 87 110-201 602-695 (712)
87 TIGR01924 rsbW_low_gc serine-p 94.0 0.085 1.8E-06 50.2 5.2 85 111-199 45-131 (159)
88 COG5002 VicK Signal transducti 93.2 0.15 3.3E-06 54.7 5.8 88 111-201 345-436 (459)
89 COG4192 Signal transduction hi 93.2 0.16 3.5E-06 56.0 6.2 61 111-172 567-627 (673)
90 COG3852 NtrB Signal transducti 93.1 0.12 2.6E-06 54.6 4.8 87 111-202 244-344 (363)
91 PRK10935 nitrate/nitrite senso 92.8 0.23 5.1E-06 55.1 6.9 75 109-203 472-549 (565)
92 COG2972 Predicted signal trans 92.6 0.11 2.4E-06 57.4 4.0 84 111-203 353-442 (456)
93 COG4251 Bacteriophytochrome (l 92.1 0.25 5.4E-06 56.5 6.0 87 111-203 639-731 (750)
94 PRK13559 hypothetical protein; 91.6 0.25 5.4E-06 51.7 5.0 77 110-201 269-348 (361)
95 COG2172 RsbW Anti-sigma regula 91.4 0.4 8.8E-06 45.3 5.7 82 111-202 43-129 (146)
96 COG3920 Signal transduction hi 88.4 0.58 1.3E-05 47.1 4.5 46 112-157 126-173 (221)
97 COG3851 UhpB Signal transducti 88.1 1.1 2.3E-05 48.6 6.3 89 94-201 396-484 (497)
98 PF14501 HATPase_c_5: GHKL dom 81.6 3.1 6.6E-05 36.0 5.2 42 111-154 8-51 (100)
99 COG4564 Signal transduction hi 80.0 4.4 9.5E-05 43.6 6.5 76 111-203 358-438 (459)
100 PF01119 DNA_mis_repair: DNA m 77.0 7.1 0.00015 35.2 6.3 73 401-475 27-118 (119)
101 COG3275 LytS Putative regulato 73.1 3.4 7.4E-05 46.2 3.7 45 112-158 460-507 (557)
102 cd03483 MutL_Trans_MLH1 MutL_T 65.6 16 0.00034 33.6 5.9 75 401-475 36-126 (127)
103 KOG0355 DNA topoisomerase type 65.4 18 0.0004 42.9 7.6 48 110-160 55-102 (842)
104 cd03482 MutL_Trans_MutL MutL_T 62.2 17 0.00037 33.1 5.5 75 401-475 31-122 (123)
105 cd00782 MutL_Trans MutL_Trans: 57.4 23 0.0005 31.6 5.4 24 401-424 31-56 (122)
106 cd03486 MutL_Trans_MLH3 MutL_T 49.5 45 0.00097 31.1 6.1 24 401-424 32-55 (141)
107 cd03484 MutL_Trans_hPMS_2_like 49.2 51 0.0011 30.8 6.4 25 401-425 49-77 (142)
108 cd03485 MutL_Trans_hPMS_1_like 40.4 50 0.0011 30.3 4.8 72 401-472 34-128 (132)
109 PF00183 HSP90: Hsp90 protein; 29.7 1.4E+02 0.003 34.3 7.1 64 410-476 156-220 (531)
110 PRK09697 protein secretion pro 23.1 47 0.001 30.4 1.5 21 6-26 84-104 (139)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.2e-54 Score=479.56 Aligned_cols=409 Identities=48% Similarity=0.713 Sum_probs=361.0
Q ss_pred ChhhhHhhhccccCccCccccCCCcCcccceecccccccccccccccHHHHHHHhhccchhhhhCCCceEEEEEEEccCC
Q 008268 62 APESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKD 141 (572)
Q Consensus 62 ~~~~~~fw~a~~~~~~~~~~~~~~~~~~~~~~v~~~fLhSnatsh~~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~ 141 (572)
+..||||||||+|............++-.|+.+||+|||+|+|+|+|+++|++||+|||+|.+.++++++.|+......+
T Consensus 100 ~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d 179 (775)
T KOG1845|consen 100 AIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAKGAIAELLDNALDEITNGATFVRVDYINPVMD 179 (775)
T ss_pred hhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccccChhhhhccccccccccccceEEeeeeccccc
Confidence 44599999999999944455556677789999999999999999999999999999999999999999998887765444
Q ss_pred C-CCeEEEE-----ECCCCCCHHHHHHhhhcCcccccC-CCCcccccccccccccccCCEEEEEee--eCCCCCcceeee
Q 008268 142 N-SPALVFI-----DDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFKTSTMRLGADVIVFSR--ATHESKSTQSIG 212 (572)
Q Consensus 142 ~-~~~I~I~-----DNG~GMs~e~l~~~~~~G~S~K~~-~~~iG~fGiG~KsAs~~lg~~v~V~Sr--~~~~~~~t~svg 212 (572)
. ...++|. |||+||.++.+.++|.+|++.|.. ...+|+||+|||++.|++|.++.|++| ...+...++++|
T Consensus 180 ~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsig 259 (775)
T KOG1845|consen 180 IFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIG 259 (775)
T ss_pred ccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEE
Confidence 4 4556666 779999999999999999998877 789999999999999999999999999 444667899999
Q ss_pred eeeeeehhccCCCCeEeee----eeecCCCCccccccccCccchhhhhhh-----hhccCCCCChHHHHHh---------
Q 008268 213 LLSYTYLRKTGQDDVIVPM----IDFDISGHWAEPIIYSSQDDWSFNLKT-----ILEWSPFASKSELLQQ--------- 274 (572)
Q Consensus 213 llS~tfl~~~~~~di~VP~----~d~d~~~~~~~~iv~~~~e~w~~~l~~-----Il~~SPf~se~eL~~q--------- 274 (572)
+|||+||+.+++++++||| .+++.....+.+|++.+..+|..|+.+ +++|+||.++.+++.|
T Consensus 260 lls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~ 339 (775)
T KOG1845|consen 260 LLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDF 339 (775)
T ss_pred EEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhcccc
Confidence 9999999999999999999 888888888999999889999999888 9999999999999988
Q ss_pred ------hccCCCCeeEEEEecc--cccCCCceeccCCCChhhhhhcccccccccccchhhhhhhccchhhhhhhhHHhhh
Q 008268 275 ------FEDIGPHGTKVIIYNL--WMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYA 346 (572)
Q Consensus 275 ------f~~i~~~GT~IiI~nL--~~~~~g~~Eldf~~d~~DI~i~~~~~~~~~~~~~~~~~~~~~hi~~~~~~SLRaY~ 346 (572)
++.+..+||.+|+||+ |...+|.+|++|..++++|.. .+.++++.|.
T Consensus 340 ~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~-------------------------~~~~~~~s~~ 394 (775)
T KOG1845|consen 340 PEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW-------------------------TYCHSHLSEA 394 (775)
T ss_pred chhcchhhhccCCCceeeeechhhhcccccceeeccccCcccccc-------------------------cchhhhhhcc
Confidence 8888899999999999 999999999999988766441 3466788999
Q ss_pred hhhccCCCCcEEEEECCeecccccccccccCCceeeecccccCc---CCCceeEEEEeeeccCC-CcccCceEEEEcCce
Q 008268 347 SMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAP---LKDATAETTIGFIKEAP-ALSVSGFNVYHKNRL 422 (572)
Q Consensus 347 siLYL~~~~~fkI~LnG~~V~~~~i~~~l~~~~~i~ykP~~~~~---~~~~~v~i~~Gf~k~~~-~~~~~Gf~VY~nnRL 422 (572)
+|||+..+.+|++++.|+.+.++.+....+..+.+.|+|+..+. +.........||.+.++ ..+.++++|||.+||
T Consensus 395 sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~l 474 (775)
T KOG1845|consen 395 SILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRL 474 (775)
T ss_pred cccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcc
Confidence 99999989999999999999999998888888888888987753 11233334567776654 567889999999999
Q ss_pred ec----ccccccCCCCccCceEEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 008268 423 IR----PFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPASSS 495 (572)
Q Consensus 423 I~----~~~kv~~~~~~~grgviGVleadflepthnKQdFe~t~~y~~l~~~L~e~l~~YW~~~~~~~g~~~~~~~~ 495 (572)
|. ++|+.|+...+.++++++++.++|.++++++|+|+.+..-...+..+.++++.||...|+.++|..+....
T Consensus 475 ie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~~~ 551 (775)
T KOG1845|consen 475 IEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQLQK 551 (775)
T ss_pred hhhcccceeeecCCCccccccccceecccccccCCCccccccccccccchhhhhhcccccccccccccCccchhhhh
Confidence 99 99999999999999999999999999999999999999999999999999999999999999998776433
No 2
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=6.3e-21 Score=214.98 Aligned_cols=280 Identities=25% Similarity=0.379 Sum_probs=212.1
Q ss_pred eEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccccccccCCEEEEEeeeCCCCCcceeeeeeeeeehhccCC
Q 008268 145 ALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQ 224 (572)
Q Consensus 145 ~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~~~~~t~svgllS~tfl~~~~~ 224 (572)
++++.|||.||+++++..+..|+.. ...+|.||+|+|+.+|++|+++.++|+.. .+++++++|+||++.+..
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~~----~~~ig~ygnG~ksgs~r~gkd~~~~tk~~----~~~s~~~~sqt~~e~~~~ 72 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAVG----LYGIGDYGNGLKSGSMRIGKDFILFTKKE----STMSCLFLSQTFHESEAD 72 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhccc----ccccccccCcccccccccCcccceeeccc----cccceeeeeccccccccc
Confidence 4688999999999999999988332 57899999999999999999999999985 368999999999999999
Q ss_pred CCeEeeeeeecCCCCccccccccCccchhhhhhhhhccCCCCChHHHHHhhccC-CCCe-eEEEEecccccCCCceeccC
Q 008268 225 DDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDI-GPHG-TKVIIYNLWMNDEGVYELSF 302 (572)
Q Consensus 225 ~di~VP~~d~d~~~~~~~~iv~~~~e~w~~~l~~Il~~SPf~se~eL~~qf~~i-~~~G-T~IiI~nL~~~~~g~~Eldf 302 (572)
+.++||+..|+..+.. ++ .+.+.+++++|+.+|+|.+++.++.+++++ +..| |.++|.|+.+...+.++++|
T Consensus 73 ~~vvvP~~t~~~~~~~---~~---~~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~ 146 (775)
T KOG1845|consen 73 DAVVVPCPTFNPRTRE---IV---TEKFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKW 146 (775)
T ss_pred ccceeccccccccccc---cc---ccccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCccccc
Confidence 9999999999987643 32 377888999999999999999999999987 4555 99999999999999999999
Q ss_pred CCChhhhhhcccccccccccchhhhhhhccchhhhhhhhHHhhhhhhccCCCCcEEEEECCeecccccccccccCCceee
Q 008268 303 DDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVIS 382 (572)
Q Consensus 303 ~~d~~DI~i~~~~~~~~~~~~~~~~~~~~~hi~~~~~~SLRaY~siLYL~~~~~fkI~LnG~~V~~~~i~~~l~~~~~i~ 382 (572)
..++.||++.++..+... +. .|+.++|+. +.|.|++++..|+...++.+.. .
T Consensus 147 a~~a~aeLldnalDEi~~------------------~~---tf~~vd~I~--p~~d~~i~a~~v~~~~~s~~gg-----~ 198 (775)
T KOG1845|consen 147 AKGAIAELLDNALDEITN------------------GA---TFVRVDYIN--PVMDIFIRALVVQLKRISDDGG-----G 198 (775)
T ss_pred ccChhhhhcccccccccc------------------cc---ceEEeeeec--ccccccceeEEeeccceecccc-----c
Confidence 999999998765543211 22 347888987 9999999999999876543321 2
Q ss_pred ecccccCc------CCC-----ceeEEEEeeeccCCCcccCceEEEEcCceecccccccCCCCccCceEEEEEecCccCC
Q 008268 383 YRPQVSAP------LKD-----ATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEP 451 (572)
Q Consensus 383 ykP~~~~~------~~~-----~~v~i~~Gf~k~~~~~~~~Gf~VY~nnRLI~~~~kv~~~~~~~grgviGVleadflep 451 (572)
.+|++... ..+ ...+...||.+ ....-|-.+|+-.|. -...+...-+.||.+...||++
T Consensus 199 ~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfkt---st~rlGa~~i~~~R~-------~~~~~~kstqsiglls~tfL~~ 268 (775)
T KOG1845|consen 199 MKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKT---STMRLGADAIVFSRC-------ESRRGLKSTQSIGLLSYTFLRK 268 (775)
T ss_pred cCHHHHHHHHHhhhhhhhhhhhhhhhhcccccc---chhhhccceeEeehh-------hhhccCCcceeEEEEEEeeecc
Confidence 22222110 001 11122334433 233478888888886 1234566778999999999999
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHHHHH
Q 008268 452 THDKQDFERSTLFVRLESKLKQMTLEYWK 480 (572)
Q Consensus 452 thnKQdFe~t~~y~~l~~~L~e~l~~YW~ 480 (572)
|+ |+||.... ++.....+...++|.
T Consensus 269 t~-~~d~iv~~---~~i~~~~e~~~~~~~ 293 (775)
T KOG1845|consen 269 TG-KRDFIVPM---RLIKMDYEKSDQLWQ 293 (775)
T ss_pred cc-CCceeEec---chhhhhhhccccccc
Confidence 99 99997654 334444444444453
No 3
>PRK05218 heat shock protein 90; Provisional
Probab=99.73 E-value=9e-17 Score=181.25 Aligned_cols=105 Identities=27% Similarity=0.347 Sum_probs=77.3
Q ss_pred CcccceecccccccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCC
Q 008268 87 GSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGG 153 (572)
Q Consensus 87 ~~~~~~~v~~~fLhSnatsh~~~f~AIaELIDNAiDA~~~-------------~A~~V~I~i~~~~~~~~~~I~I~DNG~ 153 (572)
++++-+.-+ |||+.. .+|+|||.||+||+.. ++....|.|..+. +...|.|.|||.
T Consensus 14 ~ll~ll~~~---LYs~~~------v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~i~I~DnG~ 82 (613)
T PRK05218 14 QLLHLMIHS---LYSNKE------IFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDK--EARTLTISDNGI 82 (613)
T ss_pred HHHHHHhhh---hcCCch------HHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcC--CCCeEEEEECCC
Confidence 344444433 787755 5899999999999731 2334555555432 344699999999
Q ss_pred CCCHHHHHHhh-hcCccccc------------CCCCcccccccccccccccCCEEEEEeeeCC
Q 008268 154 GMDPESLRKCM-SLGYSTKK------------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 154 GMs~e~l~~~~-~~G~S~K~------------~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
||+.+++...+ ++|+|.+. ....+|+||+||.+ +|.++++++|.||+.+
T Consensus 83 GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S-~f~va~~v~V~Sr~~~ 144 (613)
T PRK05218 83 GMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYS-AFMVADKVTVITRSAG 144 (613)
T ss_pred CCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchh-hhhccCEEEEEEcCCC
Confidence 99999999765 58877421 24679999999975 6779999999999864
No 4
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.69 E-value=1.9e-17 Score=152.91 Aligned_cols=90 Identities=36% Similarity=0.574 Sum_probs=78.2
Q ss_pred HHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC---CCCccccccccccc
Q 008268 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA---NKTIGQYGNGFKTS 187 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~---~~~iG~fGiG~KsA 187 (572)
.||+|||+||+|| .|+.|.|.+.... .+...|+|.|||.||+.+++.+++++|.+.+.. ...+|+||+|+|.|
T Consensus 5 ~al~ElI~Ns~DA---~a~~I~I~i~~~~-~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A 80 (137)
T PF13589_consen 5 DALRELIDNSIDA---GATNIKISIDEDK-KGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLA 80 (137)
T ss_dssp HHHHHHHHHHHHH---HHHHEEEEEEEET-TTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGG
T ss_pred HHHHHHHHHHHHc---cCCEEEEEEEcCC-CCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHH
Confidence 5999999999999 7899999998743 456899999999999999999999999998873 67899999999999
Q ss_pred ccccCCEEEEEeeeCCC
Q 008268 188 TMRLGADVIVFSRATHE 204 (572)
Q Consensus 188 s~~lg~~v~V~Sr~~~~ 204 (572)
++++|+.+.|.|++.+.
T Consensus 81 ~~~~~~~~~v~S~~~~~ 97 (137)
T PF13589_consen 81 IFSLGDRVEVISKTNGE 97 (137)
T ss_dssp GGGTEEEEEEEEESTTS
T ss_pred HHHhcCEEEEEEEECCC
Confidence 99999999999999754
No 5
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.62 E-value=4.9e-15 Score=167.71 Aligned_cols=278 Identities=20% Similarity=0.240 Sum_probs=160.1
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cCcccccC------CCCccc
Q 008268 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA------NKTIGQ 179 (572)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~------~~~iG~ 179 (572)
+.|.+|+.|||+||+|| ||+.|.|++. .+|...|.|.|||+||+++|+.-++. +.+|+-.. ..++|.
T Consensus 22 erPaSVVKELVENSlDA---GAt~I~I~ve---~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~DL~~I~TlGF 95 (638)
T COG0323 22 ERPASVVKELVENSLDA---GATRIDIEVE---GGGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLEDLFRIRTLGF 95 (638)
T ss_pred ecHHHHHHHHHhccccc---CCCEEEEEEc---cCCccEEEEEECCCCCCHHHHHHHHhhhccccCCchhHHHHhhccCc
Confidence 56889999999999999 9999999885 45777899999999999999998765 67765443 467777
Q ss_pred ccccccccccccCCEEEEEeeeCCCCCcceeeeeeeeeehhccCCCCeEeeeeeecCCCCccccccccCccchhhhhhhh
Q 008268 180 YGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTI 259 (572)
Q Consensus 180 fGiG~KsAs~~lg~~v~V~Sr~~~~~~~t~svgllS~tfl~~~~~~di~VP~~d~d~~~~~~~~iv~~~~e~w~~~l~~I 259 (572)
-|-.| ++.+-..+++|.||+.+.. .| +.+...|+.+...
T Consensus 96 RGEAL--~SIasVsrlti~Srt~~~~-----~~-------------------~~~~~~g~~~~~~--------------- 134 (638)
T COG0323 96 RGEAL--ASIASVSRLTITSRTAEAS-----EG-------------------TQIYAEGGGMEVT--------------- 134 (638)
T ss_pred cHHHH--HHHHhhheeEEEeecCCcC-----ce-------------------EEEEecCCccccc---------------
Confidence 77665 5677889999999965432 22 1333333221100
Q ss_pred hccCCCCChHHHHHhhccCCCCeeEEEEecccccCCCceeccCCCChhhhhhcccccccccccchhhhhhhccchhh-hh
Q 008268 260 LEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISY-RI 338 (572)
Q Consensus 260 l~~SPf~se~eL~~qf~~i~~~GT~IiI~nL~~~~~g~~Eldf~~d~~DI~i~~~~~~~~~~~~~~~~~~~~~hi~~-~~ 338 (572)
-.| .-..-||+|.|.||..|.....- |- +... . | -.||.. +-
T Consensus 135 --~~p------------~a~~~GTtVeV~dLF~NtPaRrK--fl--------ks~~---------~---E-~~~i~~vv~ 177 (638)
T COG0323 135 --VKP------------AAHPVGTTVEVRDLFYNTPARRK--FL--------KSEK---------T---E-FGHITELIN 177 (638)
T ss_pred --ccC------------CCCCCCCEEEehHhhccChHHHH--hh--------cccH---------H---H-HHHHHHHHH
Confidence 001 01234999999999998764311 21 1111 1 1 123332 23
Q ss_pred hhhHHhhhhhhccCCCCcEEEEECCe---ecccccccccccCCceeeecccccCc---CC--CceeEEEEeeeccC--CC
Q 008268 339 RYSLRAYASMLYLGKFDNFKIILRGK---PIQQFHIADELKFPKVISYRPQVSAP---LK--DATAETTIGFIKEA--PA 408 (572)
Q Consensus 339 ~~SLRaY~siLYL~~~~~fkI~LnG~---~V~~~~i~~~l~~~~~i~ykP~~~~~---~~--~~~v~i~~Gf~k~~--~~ 408 (572)
+++|- +-.-+|.++.+|+ .+....-..+....-.-.|.+.+..+ ++ ...+. -.||+..+ ..
T Consensus 178 r~ALa--------hp~I~F~l~~~gk~~~~~~~~~~~~~~~~ri~~i~G~~~~~~~l~i~~~~~~~~-l~G~v~~P~~~r 248 (638)
T COG0323 178 RYALA--------HPDISFSLSHNGKLRIELLKLPGTGDLEERIAAVYGTEFLKNALPIENEHEDLR-LSGYVSLPEFTR 248 (638)
T ss_pred HHHhc--------CCCeEEEEEECCceeeEEEecCCCCcHHHHHHHHhCHHHHHhhcccccCCCceE-EEEEeccccccc
Confidence 55541 1125889999999 44332221111110011232222211 11 12233 34888665 24
Q ss_pred cccCceEEEEcCceecccccc--c----CCCCccCceEEEEEecC----c--cCCCCCccc--ccc-cHHHHHHHHHHHH
Q 008268 409 LSVSGFNVYHKNRLIRPFWKV--T----GDGSLKGNGVVGVLEAN----F--IEPTHDKQD--FER-STLFVRLESKLKQ 473 (572)
Q Consensus 409 ~~~~Gf~VY~nnRLI~~~~kv--~----~~~~~~grgviGVlead----f--lepthnKQd--Fe~-t~~y~~l~~~L~e 473 (572)
......++|.|||+|+-..-. . ..--..++.-+-||..+ . +.+.=+|+. |.+ ..++..+...+.+
T Consensus 249 ~~~~~q~~fVNgR~V~~~~l~~Ai~~aY~~~L~~~r~P~~vL~l~l~p~~vDVNVHP~K~EVrf~~~~~i~~~I~~~I~~ 328 (638)
T COG0323 249 ASRDYQYLFVNGRPVRDKLLNHALREAYADYLPRGRYPVFVLFLELDPELVDVNVHPAKKEVRFSDERLVHDLIYEAIKE 328 (638)
T ss_pred CCccceEEEECCCEeccHHHHHHHHHHHHhhccCCCCcEEEEEEeeChhhcccccCCCcceEEecCHHHHHHHHHHHHHH
Confidence 567899999999999754321 1 11234566555555542 2 223556777 444 3344445555555
Q ss_pred HHHH
Q 008268 474 MTLE 477 (572)
Q Consensus 474 ~l~~ 477 (572)
.+.+
T Consensus 329 ~L~~ 332 (638)
T COG0323 329 ALAQ 332 (638)
T ss_pred HHHh
Confidence 4443
No 6
>PRK14083 HSP90 family protein; Provisional
Probab=99.59 E-value=1.1e-14 Score=163.69 Aligned_cols=105 Identities=26% Similarity=0.462 Sum_probs=78.9
Q ss_pred cCcccceecccccccccccccccHHHHHHHhhccchhhhhCC-------CceEEEEEEEccCCCCCeEEEEECCCCCCHH
Q 008268 86 QGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNG-------ATFVKVDRVNIMKDNSPALVFIDDGGGMDPE 158 (572)
Q Consensus 86 ~~~~~~~~v~~~fLhSnatsh~~~f~AIaELIDNAiDA~~~~-------A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e 158 (572)
.++++.++-+ |||+.. .+|+|||.||+||+... ...|.|.+. + .+...|+|.|||.||+.+
T Consensus 10 ~~ll~ll~~~---LYs~~~------iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d--~~~~~l~I~DnGiGmt~e 77 (601)
T PRK14083 10 RGVIDLLSRH---LYSSPR------VYVRELLQNAVDAITARRALDPTAPGRIRIELT-D--AGGGTLIVEDNGIGLTEE 77 (601)
T ss_pred HHHHHHHHHh---hcCCcH------HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-c--CCCcEEEEEeCCCCCCHH
Confidence 3455666544 777643 69999999999997421 125566552 2 246789999999999999
Q ss_pred HHHHh-hhcCcccccC-------CCCcccccccccccccccCCEEEEEeeeCC
Q 008268 159 SLRKC-MSLGYSTKKA-------NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 159 ~l~~~-~~~G~S~K~~-------~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++.+. +++|.|.+.. ...||+||+||++ +|.++.++.|.||..+
T Consensus 78 el~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S-~F~vad~v~V~Tr~~~ 129 (601)
T PRK14083 78 EVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLS-CFLVADEIVVVSRSAK 129 (601)
T ss_pred HHHHHHhhhccchhhhhhhcccccccccccccceEE-EEEecCEEEEEeccCC
Confidence 99985 5699887754 2568999999975 4669999999999864
No 7
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.58 E-value=3.8e-14 Score=160.36 Aligned_cols=90 Identities=22% Similarity=0.322 Sum_probs=72.7
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-------CCCccc
Q 008268 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQ 179 (572)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-------~~~iG~ 179 (572)
..|.++|.||||||+|| ||+.|.|.+.. ++...|.|.|||+||+.+++..++....++|.. ...+|.
T Consensus 21 ~~~~svvkElveNsiDA---gat~I~v~i~~---~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~Gf 94 (617)
T PRK00095 21 ERPASVVKELVENALDA---GATRIDIEIEE---GGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGF 94 (617)
T ss_pred cCHHHHHHHHHHHHHhC---CCCEEEEEEEe---CCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCc
Confidence 56788999999999999 99999999953 356789999999999999999988855555653 257899
Q ss_pred ccccccccccccCCEEEEEeeeCCC
Q 008268 180 YGNGFKTSTMRLGADVIVFSRATHE 204 (572)
Q Consensus 180 fGiG~KsAs~~lg~~v~V~Sr~~~~ 204 (572)
.|.|+.+. ....+++|.|++.++
T Consensus 95 rGeAL~sI--~~vs~l~i~s~~~~~ 117 (617)
T PRK00095 95 RGEALPSI--ASVSRLTLTSRTADA 117 (617)
T ss_pred chhHHHhh--hhceEEEEEEecCCC
Confidence 99987543 344589999998653
No 8
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.6e-14 Score=155.96 Aligned_cols=98 Identities=28% Similarity=0.425 Sum_probs=77.0
Q ss_pred ccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh
Q 008268 99 LHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS 165 (572)
Q Consensus 99 LhSnatsh~~~f~AIaELIDNAiDA~~~-------------~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~ 165 (572)
||||.. ..|+|||.||.||+.. +...+.|.+..+ ..+.+|+|.|||.||+.+++...+.
T Consensus 24 lYSnKe------IFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~D--k~~kTLtI~DNGIGMT~~Ev~~~Lg 95 (623)
T COG0326 24 LYSNKE------IFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFD--KDNKTLTISDNGIGMTKDEVIENLG 95 (623)
T ss_pred ccCCcH------HHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEc--ccCCEEEEEeCCCCCCHHHHHHHHH
Confidence 788876 5799999999999831 122456666653 3567999999999999999988765
Q ss_pred -cCcccccC-----------CCCcccccccccccccccCCEEEEEeeeCCCC
Q 008268 166 -LGYSTKKA-----------NKTIGQYGNGFKTSTMRLGADVIVFSRATHES 205 (572)
Q Consensus 166 -~G~S~K~~-----------~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~~~ 205 (572)
++.|..+. ...||+||+||.+|+| .+++|+|.||..+.+
T Consensus 96 TIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~ 146 (623)
T COG0326 96 TIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGED 146 (623)
T ss_pred HhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCC
Confidence 77765432 3459999999998877 999999999998643
No 9
>PTZ00130 heat shock protein 90; Provisional
Probab=99.54 E-value=1.5e-13 Score=157.12 Aligned_cols=96 Identities=24% Similarity=0.359 Sum_probs=73.9
Q ss_pred ccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHh-h
Q 008268 99 LHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKC-M 164 (572)
Q Consensus 99 LhSnatsh~~~f~AIaELIDNAiDA~~~-------------~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~-~ 164 (572)
|||+.- .+|+|||.||.||+.. ....+.|.|..+. ....|+|.|||.||+.+++.+. .
T Consensus 85 LYS~ke------IFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~--~~~tLtI~DnGIGMT~eEl~~nLg 156 (814)
T PTZ00130 85 LYTQKE------VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANK--EKNILSITDTGIGMTKEDLINNLG 156 (814)
T ss_pred cCCCCC------ceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECC--CCCEEEEEECCCCCCHHHHHHHhh
Confidence 788765 4899999999999841 1235677776532 4568999999999999999765 4
Q ss_pred hcCccccc-----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 008268 165 SLGYSTKK-----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 165 ~~G~S~K~-----------~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++|+|... +...||+||+||.+|+| ++.+|.|.||+.+
T Consensus 157 TIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~Trs~~ 205 (814)
T PTZ00130 157 TIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNN 205 (814)
T ss_pred hhcccccHHHHHHhhccCCCcccccccccchhheee-ecCEEEEEEcCCC
Confidence 58876422 24589999999987655 9999999999864
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=2.6e-13 Score=141.62 Aligned_cols=87 Identities=21% Similarity=0.332 Sum_probs=69.2
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-------CCCccc
Q 008268 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQ 179 (572)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-------~~~iG~ 179 (572)
..+..||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++..++++|.. ...+|+
T Consensus 21 ~~~~~~l~eLi~Na~dA---~a~~I~i~~~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~ 94 (312)
T TIGR00585 21 ERPASVVKELVENSLDA---GATRIDVEIEE---GGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGF 94 (312)
T ss_pred hhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCc
Confidence 45678999999999999 89999888864 234469999999999999999988866555543 356899
Q ss_pred ccccccccccccCCEEEEEeee
Q 008268 180 YGNGFKTSTMRLGADVIVFSRA 201 (572)
Q Consensus 180 fGiG~KsAs~~lg~~v~V~Sr~ 201 (572)
.|.|+. +++...+++|.|+.
T Consensus 95 rG~al~--si~~~s~~~i~S~~ 114 (312)
T TIGR00585 95 RGEALA--SISSVSRLTITTKT 114 (312)
T ss_pred cchHHH--HHHhhCcEEEEEee
Confidence 999874 34444589999998
No 11
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.46 E-value=2e-12 Score=147.36 Aligned_cols=97 Identities=26% Similarity=0.334 Sum_probs=73.3
Q ss_pred cccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh
Q 008268 98 FLHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM 164 (572)
Q Consensus 98 fLhSnatsh~~~f~AIaELIDNAiDA~~~-------------~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~ 164 (572)
.||||.- ..|+|||.||.||+.. ....+.|.+..+ .....|+|.|||.||+.+++.+.+
T Consensus 21 slYs~~~------iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d--~~~~~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 21 TFYSNKE------IFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPD--KENKTLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred cccCCcc------HhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEc--CCCCEEEEEECCCCCCHHHHHHHh
Confidence 3788764 4799999999999731 123466777653 245689999999999999998755
Q ss_pred -hcCccccc----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 008268 165 -SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 165 -~~G~S~K~----------~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++|.|... +...||+||+||.+++| ++.+|.|.||..+
T Consensus 93 gtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~ 141 (701)
T PTZ00272 93 GTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNS 141 (701)
T ss_pred hhhhhcchHHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCC
Confidence 47776332 14589999999986655 9999999999753
No 12
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=99.16 E-value=2.1e-10 Score=125.41 Aligned_cols=90 Identities=22% Similarity=0.274 Sum_probs=72.3
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-hcCcccccC------CCCccc
Q 008268 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTKKA------NKTIGQ 179 (572)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~-~~G~S~K~~------~~~iG~ 179 (572)
..|..||.|||+||+|| +++.|.|.+.. +|-..+.|.|||.||-.+++.-.. +|.+|+-.. .+++|.
T Consensus 26 ~RP~NAlKEliENSLDA---~ST~I~V~vk~---GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~kFEDL~~lsTyGF 99 (694)
T KOG1979|consen 26 QRPVNALKELIENSLDA---NSTSIDVLVKD---GGLKLLQISDNGSGIRREDLPILCERFTTSKLTKFEDLFSLSTYGF 99 (694)
T ss_pred hchHHHHHHHHhccccC---CCceEEEEEec---CCeEEEEEecCCCccchhhhHHHHHHhhhhhcchhHHHHhhhhcCc
Confidence 45778999999999999 99998888753 567778899999999999998755 477764332 456666
Q ss_pred ccccccccccccCCEEEEEeeeCCC
Q 008268 180 YGNGFKTSTMRLGADVIVFSRATHE 204 (572)
Q Consensus 180 fGiG~KsAs~~lg~~v~V~Sr~~~~ 204 (572)
-|-. .|+++-..+|+|.|+..++
T Consensus 100 RGEA--LASiShVA~VtV~TK~~~~ 122 (694)
T KOG1979|consen 100 RGEA--LASISHVAHVTVTTKTAEG 122 (694)
T ss_pred cHHH--HhhhhheeEEEEEEeecCc
Confidence 6654 5889999999999999865
No 13
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.98 E-value=2.1e-09 Score=115.41 Aligned_cols=94 Identities=26% Similarity=0.387 Sum_probs=75.9
Q ss_pred HHHHHHhhccchhhhhC-C-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cCcccccC--CCCcccccccc
Q 008268 110 FGAIAELLDNAVDEVQN-G-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA--NKTIGQYGNGF 184 (572)
Q Consensus 110 f~AIaELIDNAiDA~~~-~-A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~--~~~iG~fGiG~ 184 (572)
..+|.|||+||+||+.. | -..|.|.|... ..+...+.|+|||.||+++.+.++|. +=+++|.. .+..|++|+|.
T Consensus 38 ~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGi 116 (538)
T COG1389 38 TTTVHELVTNSLDACEEAGILPDIKVEIERI-GKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGI 116 (538)
T ss_pred HHHHHHHHhcchhhHHhcCCCCceEEEEEec-CCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccH
Confidence 45899999999999842 3 35677777663 24678899999999999999999986 55566664 78999999998
Q ss_pred ccc----ccccCCEEEEEeeeCCC
Q 008268 185 KTS----TMRLGADVIVFSRATHE 204 (572)
Q Consensus 185 KsA----s~~lg~~v~V~Sr~~~~ 204 (572)
+.| .|..|+.+.|.|++.++
T Consensus 117 s~avLysQmTtGkPv~V~s~T~~s 140 (538)
T COG1389 117 SAAVLYSQMTTGKPVRVISSTGDS 140 (538)
T ss_pred HHHHHHHHhcCCCceEEEecCCCC
Confidence 754 56789999999999753
No 14
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.78 E-value=4.6e-08 Score=111.64 Aligned_cols=94 Identities=24% Similarity=0.341 Sum_probs=69.7
Q ss_pred cHHHHHHHhhccchhhhhCCC--ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cCcccccC--CCCcccccc
Q 008268 108 WAFGAIAELLDNAVDEVQNGA--TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA--NKTIGQYGN 182 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A--~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~--~~~iG~fGi 182 (572)
+...+|.|||+||+||...+. ..|.|.+.. .+....|.|.|||+||+++++.++|. |.+++|.. ....|..|+
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~--~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~ 123 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEE--VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGI 123 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEE--CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCce
Confidence 455799999999999942211 157777754 22345799999999999999999997 66665543 356789999
Q ss_pred cccccc----cccCCEEEEEeeeCC
Q 008268 183 GFKTST----MRLGADVIVFSRATH 203 (572)
Q Consensus 183 G~KsAs----~~lg~~v~V~Sr~~~ 203 (572)
|+.++. +..|+.+.|.|+..+
T Consensus 124 GLglai~~sqlt~GgpI~I~S~~~~ 148 (795)
T PRK14868 124 GISAAVLYSQLTSGKPAKITSRTQG 148 (795)
T ss_pred ehHHHHHHHHHcCCCcEEEEeCCCC
Confidence 987543 335788999999764
No 15
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.65 E-value=3e-08 Score=112.92 Aligned_cols=122 Identities=23% Similarity=0.265 Sum_probs=89.8
Q ss_pred ccccCccCccccCCCcCcccceecccccccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEE
Q 008268 71 AGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFI 149 (572)
Q Consensus 71 a~~~~~~~~~~~~~~~~~~~~~~v~~~fLhSnatsh~~~f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~ 149 (572)
+-+|+. ....-...++|++.-|.. |--++...-+..++.||||||+|+..++ |+.|.|.+.. + ..|+|.
T Consensus 5 ~~~y~~----~~i~~L~~lE~VrkRP~m-YiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~---d--g~I~V~ 74 (631)
T PRK05559 5 TNNYNA----DSIEVLEGLEPVRKRPGM-YIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA---D--GSVSVR 74 (631)
T ss_pred cCCCCH----HHCeeccchHHHhcCCCc-eeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeC---C--CcEEEE
Confidence 345665 223346778998888852 2234445677889999999999987664 8999998864 1 389999
Q ss_pred ECCCCCCHHHHHH--------hhh-cCcccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 008268 150 DDGGGMDPESLRK--------CMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 150 DNG~GMs~e~l~~--------~~~-~G~S~K~~----~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
|||.||+.+.... +|. +-.+.|.+ ....|+.|+|++. .-.++..++|.|++.+
T Consensus 75 DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~-vNalS~~l~V~s~r~g 140 (631)
T PRK05559 75 DNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSV-VNALSSRLEVEVKRDG 140 (631)
T ss_pred EcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhh-hhhheeeEEEEEEeCC
Confidence 9999999998887 665 33344443 4678999999964 4558899999999753
No 16
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.64 E-value=3.6e-08 Score=110.26 Aligned_cols=88 Identities=22% Similarity=0.347 Sum_probs=64.8
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHH-hhhcCcccccC------CCCcccc
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRK-CMSLGYSTKKA------NKTIGQY 180 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~-~~~~G~S~K~~------~~~iG~f 180 (572)
.+..|+.||||||+|| ||+.|.|.+.. .|...|+|.|||+|+++.+..- ++..-+|.-.+ ..++|.-
T Consensus 20 sl~sAVKELvENSiDA---GAT~I~I~~kd---yG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~f~Dl~~l~T~GFR 93 (672)
T KOG1978|consen 20 SLVSAVKELVENSIDA---GATAIDIKVKD---YGSDSIEVSDNGSGISATDFEGLALKHTTSKIVSFADLAVLFTLGFR 93 (672)
T ss_pred cHHHHHHHHHhcCccc---CCceeeEecCC---CCcceEEEecCCCCCCccchhhhhhhhhhhcccchhhhhhhhhhhhH
Confidence 3446999999999999 99999998854 3678999999999999999875 34444443322 4677777
Q ss_pred cccccccccccCCEEEEEeeeCC
Q 008268 181 GNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 181 GiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
|-.+ + ++.--++++|.|++..
T Consensus 94 GEAL-S-sLCa~~dv~I~Trt~~ 114 (672)
T KOG1978|consen 94 GEAL-S-SLCALGDVMISTRSHS 114 (672)
T ss_pred HHHH-H-hhhhccceEEEEeecc
Confidence 7666 3 3334467888888764
No 17
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=6.9e-08 Score=106.75 Aligned_cols=91 Identities=25% Similarity=0.428 Sum_probs=71.8
Q ss_pred HHHHhhccchhhhhC-----------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cCccccc-------
Q 008268 112 AIAELLDNAVDEVQN-----------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK------- 172 (572)
Q Consensus 112 AIaELIDNAiDA~~~-----------~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~------- 172 (572)
-+.|||.||-||... ......|.+..+ .....|+|.|.|.||+.++|.+.+. ++.|..+
T Consensus 61 FlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~n--k~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealk 138 (656)
T KOG0019|consen 61 FLRELISNASDALEKLRYLELKGDEKALPELEIRIITN--KDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALK 138 (656)
T ss_pred HHHhhhccccchHHHHHHHhhcCccccccceeEEeccC--CCcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHHH
Confidence 599999999999731 134567777654 4577999999999999999998775 6555322
Q ss_pred ----CCCCcccccccccccccccCCEEEEEeeeCCCC
Q 008268 173 ----ANKTIGQYGNGFKTSTMRLGADVIVFSRATHES 205 (572)
Q Consensus 173 ----~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~~~ 205 (572)
+.+.||+||+||++|.+ .+.+|.|+|+..++.
T Consensus 139 ea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e 174 (656)
T KOG0019|consen 139 EAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADE 174 (656)
T ss_pred hcccchhhhhhcccchhhhhh-hhheeEEeeccCCCc
Confidence 14689999999998766 899999999998653
No 18
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.7e-08 Score=104.86 Aligned_cols=100 Identities=27% Similarity=0.365 Sum_probs=73.8
Q ss_pred ccccccccccHHHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh
Q 008268 99 LHSNATSHKWAFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS 165 (572)
Q Consensus 99 LhSnatsh~~~f~AIaELIDNAiDA~~-------------~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~ 165 (572)
||+|.. ..++|||.||-||.. ....++.|.|..+ ..+..+.|.|.|.||+.++|.+.+.
T Consensus 92 LY~NKe------IFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~D--ke~klLhi~DtGiGMT~edLi~NLG 163 (785)
T KOG0020|consen 92 LYRNKE------IFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKAD--KEKKLLHITDTGIGMTREDLIKNLG 163 (785)
T ss_pred HhhhhH------HHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeec--hhhCeeeEecccCCccHHHHHHhhh
Confidence 566654 368999999999972 1233466666653 2467899999999999999987664
Q ss_pred -cCccccc----------C-----CCCcccccccccccccccCCEEEEEeeeCCCCCc
Q 008268 166 -LGYSTKK----------A-----NKTIGQYGNGFKTSTMRLGADVIVFSRATHESKS 207 (572)
Q Consensus 166 -~G~S~K~----------~-----~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~~~~~ 207 (572)
++.|... . ...||+||+||.+|.+ .++++.|+|+++++.++
T Consensus 164 TIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNdD~Qy 220 (785)
T KOG0020|consen 164 TIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHNDDSQY 220 (785)
T ss_pred hhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCCccce
Confidence 5444221 1 3679999999987655 99999999999887643
No 19
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=98.56 E-value=8.9e-08 Score=105.43 Aligned_cols=95 Identities=25% Similarity=0.381 Sum_probs=77.5
Q ss_pred cccccHHHHHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCccccc-CCCCcccc
Q 008268 104 TSHKWAFGAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQY 180 (572)
Q Consensus 104 tsh~~~f~AIaELIDNAiDA~~~~--A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~-~~~~iG~f 180 (572)
+.|.++ ..+++|||||+||.... .+.|.+.+.. .++...|+|.|||+||+++....+|..|+|+|. ..+++|.|
T Consensus 424 ~~~~li-tIlGNLidNA~eA~~~~~~~k~I~l~i~~--~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~~~rGiGL~ 500 (537)
T COG3290 424 QPHDLV-TILGNLIDNALEALLAPEENKEIELSLSD--RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNTGGRGIGLY 500 (537)
T ss_pred ChHHHH-HHHHHHHHHHHHHhhccCCCcEEEEEEEe--cCCEEEEEEeCCCCCCChHHHHHHHhcCccccCCCCCchhHH
Confidence 344555 79999999999998632 3556666654 567788999999999999999999999999998 57778887
Q ss_pred cccccccccccCCEEEEEeeeCC
Q 008268 181 GNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 181 GiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
- .|...-++|+.+.|.|....
T Consensus 501 L--vkq~V~~~~G~I~~~s~~~~ 521 (537)
T COG3290 501 L--VKQLVERLGGSIEVESEKGQ 521 (537)
T ss_pred H--HHHHHHHcCceEEEeeCCCC
Confidence 7 57788899999999998643
No 20
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.48 E-value=2.3e-07 Score=81.26 Aligned_cols=92 Identities=24% Similarity=0.353 Sum_probs=70.1
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccc--
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT-- 186 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~Ks-- 186 (572)
...+|.||++||+++...+ ..|.|.+... ++...|+|.|||.||+++++.+++..+++.+......+.+|+||..
T Consensus 6 l~~il~~ll~Na~~~~~~~-~~I~i~~~~~--~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~~~~~~g~GlGL~~~~ 82 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEG-GKIDITIEED--DDHLSIEISDNGVGIPPEELEKLFEPFFTSDKSETSISGHGLGLYIVK 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SEEEEEEEEE--TTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSSSGGSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CEEEEEEEEe--cCeEEEEEEeccccccccccccchhhcccccccccccCCCChHHHHHH
Confidence 3468999999999995432 5788877763 3678899999999999999999998666555444555668888753
Q ss_pred -cccccCCEEEEEeeeCC
Q 008268 187 -STMRLGADVIVFSRATH 203 (572)
Q Consensus 187 -As~~lg~~v~V~Sr~~~ 203 (572)
.+-.++.++.+.+...+
T Consensus 83 ~~~~~~~g~l~~~~~~~~ 100 (111)
T PF02518_consen 83 QIAERHGGELTIESSEGG 100 (111)
T ss_dssp HHHHHTTEEEEEEEETTT
T ss_pred HHHHHCCCEEEEEEcCCC
Confidence 35568888888888653
No 21
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.41 E-value=3e-07 Score=104.69 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=81.5
Q ss_pred CCcCcccceeccc-ccccccccccccHHHHHHHhhccchhhhhC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHH--
Q 008268 84 PVQGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPES-- 159 (572)
Q Consensus 84 ~~~~~~~~~~v~~-~fLhSnatsh~~~f~AIaELIDNAiDA~~~-~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~-- 159 (572)
....++++++.-| ||+-|... ..+|.||||||+|...+ +|+.|.|.+.. + ..|+|.|||+||+.+.
T Consensus 10 ~~L~gle~VRkRPgMYigs~~~-----~~lv~ElvdNsiDE~~ag~a~~I~V~i~~----d-~~I~V~DnGrGIp~~~h~ 79 (625)
T TIGR01055 10 EVLDGLEPVRKRPGMYTDTTRP-----NHLVQEVIDNSVDEALAGFASIIMVILHQ----D-QSIEVFDNGRGMPVDIHP 79 (625)
T ss_pred eeecccHHhhcCCCCeeCCCCc-----ceeehhhhhcccchhhcCCCCEEEEEEeC----C-CeEEEEecCCccCccccc
Confidence 3467788888776 56644432 45899999999995544 59999998853 2 5899999999999988
Q ss_pred ------HHHhhh-cCcccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 008268 160 ------LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 160 ------l~~~~~-~G~S~K~~----~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++-+|+ +-.++|.+ ....|+.|+|+++ .-.++..++|.|++.+
T Consensus 80 ~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~-vnalS~~l~v~~~r~g 133 (625)
T TIGR01055 80 KEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISV-VNALSKRVKIKVYRQG 133 (625)
T ss_pred ccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHH-HHHhcCeEEEEEEECC
Confidence 777774 33334443 4578999999964 5568899999999764
No 22
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.41 E-value=1e-06 Score=100.12 Aligned_cols=92 Identities=21% Similarity=0.293 Sum_probs=66.6
Q ss_pred HHHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cCcccccC--CCCccccccccc
Q 008268 111 GAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA--NKTIGQYGNGFK 185 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~--A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~--~~~iG~fGiG~K 185 (572)
.++.|||+||+||.... ...|.|.+... ..+...|.|.|||.||+++++.++|. |-+++|.. ....|..|+|+.
T Consensus 39 ~VVkELVeNAIDA~~~~g~~p~I~V~I~~~-g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa 117 (659)
T PRK14867 39 TIIHELVTNSLDACEEAEILPDIKVEIEKL-GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAA 117 (659)
T ss_pred HHHHHHHHHHHHHhhccCCCceEEEEEEEC-CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHH
Confidence 68999999999995321 12677777542 12234699999999999999999997 34444543 367788999986
Q ss_pred ccc----cccCCEEEEEeeeCC
Q 008268 186 TST----MRLGADVIVFSRATH 203 (572)
Q Consensus 186 sAs----~~lg~~v~V~Sr~~~ 203 (572)
.+. +..|+.+.|.|+..+
T Consensus 118 ~a~~vsql~~G~pI~I~S~~g~ 139 (659)
T PRK14867 118 GVLLFSQITTGKPLKITTSTGD 139 (659)
T ss_pred HHHHHHHHhcCCcEEEEEEcCC
Confidence 543 345778899998754
No 23
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.40 E-value=3.5e-07 Score=104.47 Aligned_cols=121 Identities=22% Similarity=0.295 Sum_probs=82.6
Q ss_pred ccccCccCccccCCCcCcccceecccc-cccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEE
Q 008268 71 AGTYAANITIKSTPVQGSLEHARVHPK-FLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVF 148 (572)
Q Consensus 71 a~~~~~~~~~~~~~~~~~~~~~~v~~~-fLhSnatsh~~~f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I 148 (572)
+.+|+. ....-...++|++.-|. |+-|.. ..-....+.||||||+|...++ |+.|.|.+.. + ..|+|
T Consensus 5 ~~~Y~~----~~i~~L~~lE~Vr~RPgMYiGs~~--~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---~--g~I~V 73 (638)
T PRK05644 5 AQEYDA----SQIQVLEGLEAVRKRPGMYIGSTG--ERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE---D--GSITV 73 (638)
T ss_pred cCCCCH----HHCeEecchHHHhcCCCceECCCC--hhhHHhhhHHhhhcccccccCCCCCEEEEEEeC---C--CcEEE
Confidence 345666 22334677888888774 444432 2334457899999999954447 9999998863 2 28999
Q ss_pred EECCCCCCHHHH--------HHhhh-cCcccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 008268 149 IDDGGGMDPESL--------RKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 149 ~DNG~GMs~e~l--------~~~~~-~G~S~K~~----~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
.|||+||+.+.- +.+|. +-.+.|.+ ....|+.|.|+++ .-.++..++|.|++.+
T Consensus 74 ~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~-vnalS~~~~v~t~r~g 140 (638)
T PRK05644 74 TDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSV-VNALSTWLEVEVKRDG 140 (638)
T ss_pred EEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhh-hhheeceEEEEEEeCC
Confidence 999999998622 22344 22333433 3478999999964 4558899999999754
No 24
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.33 E-value=1.1e-06 Score=97.23 Aligned_cols=95 Identities=24% Similarity=0.284 Sum_probs=68.1
Q ss_pred cHHHHHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cCcccccC--CCCcccccc
Q 008268 108 WAFGAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA--NKTIGQYGN 182 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~--A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~--~~~iG~fGi 182 (572)
....++.|||+||+||.... ...|.|.+... .++...|+|.|||.||+++++.++|. |-+++|.. ....|..|+
T Consensus 28 ~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~-g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~Gl 106 (488)
T TIGR01052 28 SLTTVIHELVTNSLDACEEAGILPDIKVEIEKI-GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGI 106 (488)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccE
Confidence 44579999999999995321 12577776542 11234799999999999999999987 55555543 456789999
Q ss_pred ccccc----ccccCCEEEEEeeeCC
Q 008268 183 GFKTS----TMRLGADVIVFSRATH 203 (572)
Q Consensus 183 G~KsA----s~~lg~~v~V~Sr~~~ 203 (572)
|+..+ -+..|..+.|.|+..+
T Consensus 107 GLs~~~~isq~~~G~~i~V~S~~~g 131 (488)
T TIGR01052 107 GISGAVLYSQMTTGKPVKVISSTGG 131 (488)
T ss_pred ehhHHHHHHHHcCCceEEEEEecCC
Confidence 98743 2334556999999864
No 25
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.33 E-value=9.2e-07 Score=98.72 Aligned_cols=95 Identities=25% Similarity=0.417 Sum_probs=67.7
Q ss_pred HHHHHHhhccchhhhhCC--CceEEEEEEEcc-CCCCCeEEEEECCCCCCHHHHHHhhh-cCcccccC--CCCccccccc
Q 008268 110 FGAIAELLDNAVDEVQNG--ATFVKVDRVNIM-KDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA--NKTIGQYGNG 183 (572)
Q Consensus 110 f~AIaELIDNAiDA~~~~--A~~V~I~i~~~~-~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~--~~~iG~fGiG 183 (572)
..+|.|||+||+||.... ...|.|.+.... .++...|.|.|||.||+++++.++|. +.+++|.. ....|.+|+|
T Consensus 38 ~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLG 117 (535)
T PRK04184 38 YTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIG 117 (535)
T ss_pred HHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcc
Confidence 468999999999995321 125777765421 22356799999999999999999986 54555543 3567999999
Q ss_pred ccccc----cccCCEEEEEeeeCCC
Q 008268 184 FKTST----MRLGADVIVFSRATHE 204 (572)
Q Consensus 184 ~KsAs----~~lg~~v~V~Sr~~~~ 204 (572)
+..+. +..|..+.|.|+..++
T Consensus 118 Lsiv~~isq~~~G~~I~V~S~~~~g 142 (535)
T PRK04184 118 ISAAVLYAQMTTGKPVRVISSTGGS 142 (535)
T ss_pred hHHHHHHHHHhcCCcEEEEEecCCC
Confidence 97542 2345679999997643
No 26
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=98.23 E-value=9.6e-06 Score=90.94 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=76.9
Q ss_pred CcCcccceeccc-ccccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHH---
Q 008268 85 VQGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES--- 159 (572)
Q Consensus 85 ~~~~~~~~~v~~-~fLhSnatsh~~~f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~--- 159 (572)
-..+|++++.-| ||+-|.... .-+...+.|+||||+|...+| |+.|.|.+.. ...|+|.|||.||+-+-
T Consensus 13 vL~GLEaVRkRPGMYIGst~~~-~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~-----d~sisV~DnGRGIPvdiH~~ 86 (635)
T COG0187 13 VLEGLEAVRKRPGMYIGSTGDG-RGLHHLVWEVVDNSIDEALAGYADRIDVTLHE-----DGSISVEDNGRGIPVDIHPK 86 (635)
T ss_pred eccCcHHhhcCCCceeccCCCC-CcceeeEeEeeechHhHHhhCcCcEEEEEEcC-----CCeEEEEECCCCCccccCCC
Confidence 356667776655 444433220 122234789999999987665 8888888853 35799999999999766
Q ss_pred -----HHHhhh-cCcccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 008268 160 -----LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 160 -----l~~~~~-~G~S~K~~----~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++-+|+ +-...|.+ .-.-|+.|+|. ++.-.|...+.|.+++++
T Consensus 87 ~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~-SVVNALS~~l~v~v~r~g 139 (635)
T COG0187 87 EKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGV-SVVNALSTWLEVEVKRDG 139 (635)
T ss_pred CCCCceEEEEEeeccCcccCCCccEeecCCCccce-EEEecccceEEEEEEECC
Confidence 344555 33334443 34569999998 466779999999999864
No 27
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.18 E-value=2e-06 Score=98.62 Aligned_cols=110 Identities=21% Similarity=0.252 Sum_probs=75.2
Q ss_pred cCcccceecccc-cccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHH----
Q 008268 86 QGSLEHARVHPK-FLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES---- 159 (572)
Q Consensus 86 ~~~~~~~~v~~~-fLhSnatsh~~~f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~---- 159 (572)
...++|++.-|. |+-|... .-...++.||||||+|...++ |+.|.|.+.. + ..|+|.|||+||+.+.
T Consensus 9 L~~lE~vr~RP~mYiGs~~~--~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---~--g~I~V~DnG~GIp~~~h~~~ 81 (654)
T TIGR01059 9 LEGLEAVRKRPGMYIGSTGE--TGLHHLVYEVVDNSIDEAMAGYCDTINVTIND---D--GSVTVEDNGRGIPVDIHPEE 81 (654)
T ss_pred ecchHHHhcCCCceeCCCCc--chHHhhhHHhhhccccccccCCCCEEEEEEeC---C--CcEEEEEeCCCcCccccCcC
Confidence 456777777664 3433322 333468999999999954447 9999998863 2 2599999999999752
Q ss_pred ----HHHhhh-cCcccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 008268 160 ----LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 160 ----l~~~~~-~G~S~K~~----~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++.+|. +-.+.|.+ ....|+.|.|+++ ...++..++|.|++.+
T Consensus 82 ki~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~-inalS~~l~v~~~~~g 133 (654)
T TIGR01059 82 GISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSV-VNALSEWLEVTVFRDG 133 (654)
T ss_pred CCCchHHheeeecccCccCCCcceecCCccchhHHH-HHHhcCeEEEEEEECC
Confidence 122333 22333333 4678999999964 4558899999999853
No 28
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.10 E-value=4.4e-06 Score=96.71 Aligned_cols=110 Identities=22% Similarity=0.266 Sum_probs=76.2
Q ss_pred CcCcccceeccc-ccccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHH----
Q 008268 85 VQGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPE---- 158 (572)
Q Consensus 85 ~~~~~~~~~v~~-~fLhSnatsh~~~f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e---- 158 (572)
-...++|++.-| +|+-|...- .-....+.||||||+|...++ |+.|.|.+.. + ..|+|.|||.||+.+
T Consensus 14 vL~gle~VRkRPgMYIGst~~~-~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~---d--gsIsV~DnGrGIPvd~h~~ 87 (756)
T PRK14939 14 VLKGLDAVRKRPGMYIGDTDDG-TGLHHMVYEVVDNAIDEALAGHCDDITVTIHA---D--GSVSVSDNGRGIPTDIHPE 87 (756)
T ss_pred EecccHHHhcCCCCeeCCCCCC-cchhhhhhHhhcccccccccCCCCEEEEEEcC---C--CeEEEEEcCCcccCCcccc
Confidence 356778887776 455443321 223357899999999954447 9999998853 2 389999999999987
Q ss_pred ------HHHHhhh-cCcccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 008268 159 ------SLRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 159 ------~l~~~~~-~G~S~K~~----~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++. |. +-.+.|.+ .-..|+.|+|++ +.-.++..++|.|++.+
T Consensus 88 ~g~~~~Elv--lt~lhAggKfd~~~ykvSgGlhGvG~s-vvNAlS~~l~v~v~r~g 140 (756)
T PRK14939 88 EGVSAAEVI--MTVLHAGGKFDQNSYKVSGGLHGVGVS-VVNALSEWLELTIRRDG 140 (756)
T ss_pred cCCchhhhe--eeeecccCCCCCCcccccCCccCccce-EeehccCeEEEEEEeCC
Confidence 332 32 22233432 346799999996 45568999999999754
No 29
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=97.96 E-value=4.7e-06 Score=94.67 Aligned_cols=86 Identities=24% Similarity=0.249 Sum_probs=62.9
Q ss_pred HHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH--------Hhhh-cCcccccC----CCCc
Q 008268 112 AIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA----NKTI 177 (572)
Q Consensus 112 AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~--------~~~~-~G~S~K~~----~~~i 177 (572)
++.||||||+||..++ |+.|.|.+.. + ..|+|.|||.||+.+... .+|. +-.+.|.+ ....
T Consensus 5 ~v~ElvdNAiD~~~~g~at~I~V~i~~---~--g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~ 79 (594)
T smart00433 5 LVDEIVDNAADEALAGYMDTIKVTIDK---D--NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSG 79 (594)
T ss_pred EEeeehhcccchhccCCCCEEEEEEeC---C--CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccC
Confidence 5789999999996544 9999998864 2 289999999999964432 1233 21223333 3478
Q ss_pred ccccccccccccccCCEEEEEeeeCC
Q 008268 178 GQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 178 G~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
|+.|+|+++ ...++..++|.|+..+
T Consensus 80 G~~G~Gls~-vnalS~~l~v~~~~~g 104 (594)
T smart00433 80 GLHGVGASV-VNALSTEFEVEVARDG 104 (594)
T ss_pred CcccchHHH-HHHhcCceEEEEEeCC
Confidence 999999964 5568899999999864
No 30
>PRK10364 sensor protein ZraS; Provisional
Probab=97.95 E-value=1.3e-05 Score=86.86 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=67.5
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccccc
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsA 187 (572)
....++.+||+||+++.. ....|.|.+... ++...|.|.|||.||+++.+.++|..+++.|....++|.+. .|..
T Consensus 348 ~l~~il~NLl~NA~k~~~-~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~~g~GlGL~i--v~~~ 422 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIG-QHGVISVTASES--GAGVKISVTDSGKGIAADQLEAIFTPYFTTKAEGTGLGLAV--VHNI 422 (457)
T ss_pred HHHHHHHHHHHHHHHhcC-CCCeEEEEEEEe--CCeEEEEEEECCCCCCHHHHHHHhCccccCCCCCCcccHHH--HHHH
Confidence 455789999999999842 245677777653 34578999999999999999999998887765444444444 3455
Q ss_pred ccccCCEEEEEeeeC
Q 008268 188 TMRLGADVIVFSRAT 202 (572)
Q Consensus 188 s~~lg~~v~V~Sr~~ 202 (572)
.-.+|+++.+.|...
T Consensus 423 v~~~gG~i~i~s~~~ 437 (457)
T PRK10364 423 VEQHGGTIQVASQEG 437 (457)
T ss_pred HHHCCCEEEEEeCCC
Confidence 667999999988764
No 31
>PRK10604 sensor protein RstB; Provisional
Probab=97.78 E-value=4.7e-05 Score=82.49 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=67.1
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-CCCcccccccc--
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGF-- 184 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-~~~iG~fGiG~-- 184 (572)
..-.++.+||+||+.+ ....|.|.+... ++...|.|.|||.||+++++.++|...+..... ...-|-+|+|+
T Consensus 319 ~l~~vl~NLl~NAik~---~~~~I~I~~~~~--~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~i 393 (433)
T PRK10604 319 LMERVLDNLLNNALRY---AHSRVRVSLLLD--GNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAI 393 (433)
T ss_pred HHHHHHHHHHHHHHHh---CCCeEEEEEEEE--CCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHH
Confidence 4456899999999998 456777777653 345689999999999999999999855543222 22334568886
Q ss_pred -cccccccCCEEEEEeeeCC
Q 008268 185 -KTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 185 -KsAs~~lg~~v~V~Sr~~~ 203 (572)
|...-.+|+++.+.+...+
T Consensus 394 vk~i~~~~gG~i~v~s~~~~ 413 (433)
T PRK10604 394 VHSIALAMGGSVNCDESELG 413 (433)
T ss_pred HHHHHHHCCCEEEEEecCCC
Confidence 4456679999999988643
No 32
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=97.75 E-value=6.8e-05 Score=82.06 Aligned_cols=90 Identities=27% Similarity=0.401 Sum_probs=66.9
Q ss_pred HHHHHHHhhccchhhhhC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccccc
Q 008268 109 AFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~-~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsA 187 (572)
...++.+|++||+++... ....|.|.+.. .++...|.|.|||.||+++++.++|..++++|....++|.+. .|..
T Consensus 434 l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~--~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~~g~GlGL~i--v~~i 509 (542)
T PRK11086 434 LITILGNLIENALEAVGGEEGGEISVSLHY--RNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGSNRGVGLYL--VKQS 509 (542)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHHHhCCCccCCCCCcCcHHH--HHHH
Confidence 346899999999998532 23457777665 335568999999999999999999998887775544444443 2455
Q ss_pred ccccCCEEEEEeeeC
Q 008268 188 TMRLGADVIVFSRAT 202 (572)
Q Consensus 188 s~~lg~~v~V~Sr~~ 202 (572)
.-..|+++.|.|...
T Consensus 510 v~~~~G~i~v~s~~~ 524 (542)
T PRK11086 510 VENLGGSIAVESEPG 524 (542)
T ss_pred HHHcCCEEEEEeCCC
Confidence 667899999998754
No 33
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.70 E-value=2.2e-05 Score=88.35 Aligned_cols=84 Identities=26% Similarity=0.346 Sum_probs=62.5
Q ss_pred HHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-------CCCccccccc
Q 008268 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQYGNG 183 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-------~~~iG~fGiG 183 (572)
.++.|||-||+|| +|+.|.|.+.. ....+.|.|||.||+.+++...-..-+++|.. ...+|.-|-.
T Consensus 24 ~~VeElv~NSiDA---~At~V~v~V~~----~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfRGeA 96 (1142)
T KOG1977|consen 24 QCVEELVLNSIDA---EATCVAVRVNM----ETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFRGEA 96 (1142)
T ss_pred HHHHHHHhhcccc---CceEEEEEecC----ceeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccchhh
Confidence 5899999999999 99998887743 35789999999999999998765533333332 4667777755
Q ss_pred ccccccccCCEEEEEeeeCC
Q 008268 184 FKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 184 ~KsAs~~lg~~v~V~Sr~~~ 203 (572)
+ |+.+--..+.|.|++++
T Consensus 97 L--asIsd~s~l~v~skkk~ 114 (1142)
T KOG1977|consen 97 L--ASISDMSSLVVISKKKN 114 (1142)
T ss_pred h--hhhhhhhhhhhhhhhcC
Confidence 4 45555566778888764
No 34
>PRK09303 adaptive-response sensory kinase; Validated
Probab=97.68 E-value=0.00011 Score=78.56 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=65.2
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccc---
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK--- 185 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~K--- 185 (572)
...+|.+||+||+.+... ...|.|.+... .++...|.|.|||.||+++++.++|...++.+.. ...+-+|+|+.
T Consensus 273 l~qvl~NLl~NAik~~~~-~~~I~i~~~~~-~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~~-~~~~G~GLGL~i~~ 349 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPE-GGTITLSMLHR-TTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRD-EGTEGYGIGLSVCR 349 (380)
T ss_pred HHHHHHHHHHHHHhcCCC-CceEEEEEEec-CCCEEEEEEEEcCCCCCHHHHHHHccCceeCCCC-CCCCcccccHHHHH
Confidence 346899999999998322 23566665431 2344679999999999999999999866554432 22334677763
Q ss_pred ccccccCCEEEEEeeeCCC
Q 008268 186 TSTMRLGADVIVFSRATHE 204 (572)
Q Consensus 186 sAs~~lg~~v~V~Sr~~~~ 204 (572)
...-.+|+++.|.|...++
T Consensus 350 ~iv~~~gG~i~v~s~~~~G 368 (380)
T PRK09303 350 RIVRVHYGQIWVDSEPGQG 368 (380)
T ss_pred HHHHHcCCEEEEEecCCCc
Confidence 4456799999999987543
No 35
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=97.66 E-value=0.00011 Score=81.37 Aligned_cols=89 Identities=21% Similarity=0.309 Sum_probs=66.2
Q ss_pred HHHHHHhhccchhhhhC---CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccc--
Q 008268 110 FGAIAELLDNAVDEVQN---GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF-- 184 (572)
Q Consensus 110 f~AIaELIDNAiDA~~~---~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~-- 184 (572)
..++.+|++||+++... +...|.|.+.. .++...|.|.|||.||++++..++|..|+++|.. ..|-.|+|+
T Consensus 434 ~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~--~~~g~GlGL~i 509 (545)
T PRK15053 434 AAIVGNLLDNAFEASLRSDEGNKIVELFLSD--EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD--EPGEHGIGLYL 509 (545)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCceEEEEEEE--CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC--CCCCceeCHHH
Confidence 35789999999998632 34567776654 3355679999999999999999999988886643 223346665
Q ss_pred -cccccccCCEEEEEeeeC
Q 008268 185 -KTSTMRLGADVIVFSRAT 202 (572)
Q Consensus 185 -KsAs~~lg~~v~V~Sr~~ 202 (572)
|...-..++.+.|.|...
T Consensus 510 vk~iv~~~~G~i~v~s~~~ 528 (545)
T PRK15053 510 IASYVTRCGGVITLEDNDP 528 (545)
T ss_pred HHHHHHHcCCEEEEEECCC
Confidence 444557899999988864
No 36
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.62 E-value=0.00011 Score=78.57 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=63.5
Q ss_pred HHHHHHhhccchhhhhCC---CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC---CCCccccccc
Q 008268 110 FGAIAELLDNAVDEVQNG---ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA---NKTIGQYGNG 183 (572)
Q Consensus 110 f~AIaELIDNAiDA~~~~---A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~---~~~iG~fGiG 183 (572)
-.++.+|+.||+++...+ ...|.|.... .++...|+|.|||.||+++...++|...++.|.. ..++|.+-
T Consensus 389 ~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~--~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~G~GlGL~i-- 464 (494)
T TIGR02938 389 RSLFKALVDNAIEAMNIKGWKRRELSITTAL--NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGSRKHIGMGLSV-- 464 (494)
T ss_pred HHHHHHHHHHHHHHhhccCCCcceEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCCCCCCcccHHH--
Confidence 468999999999985333 1235555443 4456789999999999999999999966655532 23333333
Q ss_pred ccccccccCCEEEEEeeeCC
Q 008268 184 FKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 184 ~KsAs~~lg~~v~V~Sr~~~ 203 (572)
.|...-.+|+++.|.|...+
T Consensus 465 ~~~iv~~~gG~i~~~s~~~~ 484 (494)
T TIGR02938 465 AQEIVADHGGIIDLDDDYSE 484 (494)
T ss_pred HHHHHHHcCCEEEEEECCCC
Confidence 24555679999999988654
No 37
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.61 E-value=0.0001 Score=79.37 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=65.3
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-CCCccccccccc-
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK- 185 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-~~~iG~fGiG~K- 185 (572)
....++.+||+||+++... ...|.|.+.. .++...|+|.|||.||+++++.++|...++.+.. ....+-.|+|+.
T Consensus 317 ~l~~vl~NLl~NAik~~~~-~~~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i 393 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPE-GTHITVRWQR--VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAI 393 (430)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCeEEEEEEE--cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHH
Confidence 3457899999999998321 2456666654 2345679999999999999999999855543322 222334577763
Q ss_pred --ccccccCCEEEEEeeeCC
Q 008268 186 --TSTMRLGADVIVFSRATH 203 (572)
Q Consensus 186 --sAs~~lg~~v~V~Sr~~~ 203 (572)
......|+++.+.|...+
T Consensus 394 vk~iv~~~gG~i~i~s~~~~ 413 (430)
T PRK11006 394 VKHALSHHDSRLEIESEVGK 413 (430)
T ss_pred HHHHHHHCCCEEEEEecCCC
Confidence 445678999999988643
No 38
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.60 E-value=6.8e-05 Score=85.90 Aligned_cols=111 Identities=23% Similarity=0.243 Sum_probs=73.7
Q ss_pred CcCcccceeccc-ccccccccccccHHHHHHHhhccchhhhhC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHH--
Q 008268 85 VQGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL-- 160 (572)
Q Consensus 85 ~~~~~~~~~v~~-~fLhSnatsh~~~f~AIaELIDNAiDA~~~-~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l-- 160 (572)
-...++|++.-| +|+-|... .-....+.|+||||+|...+ .++.|.|.+.. ...|+|.|||.||+.+--
T Consensus 12 ~L~glE~VRkRPgMYIGst~~--~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~-----dgsitV~DnGrGIPv~~h~~ 84 (637)
T TIGR01058 12 ILEGLDAVRKRPGMYIGSTDS--KGLHHLVWEIVDNSVDEVLAGYADNITVTLHK-----DNSITVQDDGRGIPTGIHQD 84 (637)
T ss_pred eecccHHHhcCCCCeECCCCc--chhheehhhhhcchhhhhhcCCCcEEEEEEcC-----CCeEEEEECCCcccCcccCc
Confidence 356778887776 45554332 22223578999999996544 48888888853 248999999999986421
Q ss_pred ------HHhhh-cCcccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 008268 161 ------RKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 161 ------~~~~~-~G~S~K~~----~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
+-+|+ +-.+.|.+ .-.-|+.|+|.+ +.-.|...++|.+++.+
T Consensus 85 ~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~s-vvNAlS~~~~V~v~r~g 137 (637)
T TIGR01058 85 GNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGAS-VVNALSSWLEVTVKRDG 137 (637)
T ss_pred CCCccceeEEEEecccCcCCCCcccccCCccccccc-ccceeeceEEEEEEECC
Confidence 11233 22223332 345699999985 45668999999998753
No 39
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.59 E-value=0.00014 Score=78.02 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=64.8
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-CCCccccccccc--
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK-- 185 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-~~~iG~fGiG~K-- 185 (572)
...++.+||+||+.+ +...|.|.+... ++...|+|.|||.||+++++.+++...++.... ....+-+|+|+.
T Consensus 354 l~~~l~nli~NA~~~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv 428 (461)
T PRK09470 354 LASALENIVRNALRY---SHTKIEVAFSVD--KDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIV 428 (461)
T ss_pred HHHHHHHHHHHHHHh---CCCcEEEEEEEE--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHH
Confidence 446799999999998 456677776652 345679999999999999999999855543322 223345577764
Q ss_pred -ccccccCCEEEEEeeeCC
Q 008268 186 -TSTMRLGADVIVFSRATH 203 (572)
Q Consensus 186 -sAs~~lg~~v~V~Sr~~~ 203 (572)
.....+++++.+.|...+
T Consensus 429 ~~~v~~~~G~l~~~s~~~~ 447 (461)
T PRK09470 429 ENAIQQHRGWVKAEDSPLG 447 (461)
T ss_pred HHHHHHCCCEEEEEECCCC
Confidence 335668999999987654
No 40
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=97.58 E-value=0.00011 Score=80.30 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=66.2
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCC-CeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccccc
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNS-PALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~-~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsA 187 (572)
...++.+|++||+.+... ...|.|.+... ++. ..|.|.|||.||+++.+.+.|..+++.+....++|.++ .+..
T Consensus 501 l~~~~~nli~na~~~~~~-~~~i~v~~~~~--~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~~g~glGL~~--~~~~ 575 (607)
T PRK11360 501 LKQVLLNILINAVQAISA-RGKIRIRTWQY--SDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKAKGTGLGLAL--SQRI 575 (607)
T ss_pred HHHHHHHHHHHHHHHhcC-CCeEEEEEEEc--CCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCCCCCchhHHH--HHHH
Confidence 446899999999998532 33566766542 233 78999999999999999999987776665555666665 3455
Q ss_pred ccccCCEEEEEeeeC
Q 008268 188 TMRLGADVIVFSRAT 202 (572)
Q Consensus 188 s~~lg~~v~V~Sr~~ 202 (572)
...+|+++.+.|...
T Consensus 576 ~~~~~G~i~~~s~~~ 590 (607)
T PRK11360 576 INAHGGDIEVESEPG 590 (607)
T ss_pred HHHcCCEEEEEEcCC
Confidence 567999999988864
No 41
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.57 E-value=0.00025 Score=59.29 Aligned_cols=89 Identities=24% Similarity=0.331 Sum_probs=61.8
Q ss_pred HHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccc---
Q 008268 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT--- 186 (572)
Q Consensus 110 f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~Ks--- 186 (572)
..++.||++||+++... ...|.|.+.. .++...|.|.|+|.||+++.+.+.+..+++.+......+..|+|++.
T Consensus 7 ~~~~~~l~~n~~~~~~~-~~~v~i~~~~--~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~gl~~~~~ 83 (111)
T smart00387 7 RQVLSNLLDNAIKYTPE-GGRITVTLER--DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGRSRKIGGTGLGLSIVKK 83 (111)
T ss_pred HHHHHHHHHHHHhcCCC-CCeEEEEEEE--cCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCCCCCCCCcccccHHHHHH
Confidence 35899999999998321 2467777654 33567899999999999999999887655444222334567888753
Q ss_pred cccccCCEEEEEeee
Q 008268 187 STMRLGADVIVFSRA 201 (572)
Q Consensus 187 As~~lg~~v~V~Sr~ 201 (572)
....++.++.+.+..
T Consensus 84 ~~~~~~g~~~~~~~~ 98 (111)
T smart00387 84 LVELHGGEISVESEP 98 (111)
T ss_pred HHHHcCCEEEEEecC
Confidence 344577777776553
No 42
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.56 E-value=0.00021 Score=58.70 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=59.4
Q ss_pred HHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccc---c
Q 008268 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT---S 187 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~Ks---A 187 (572)
.++.|||+||+++.......|.|.+.. .++...|.|.|+|.||++..+.+.+..... .......+..|+|++. .
T Consensus 3 ~~~~~ll~Na~~~~~~~~~~v~i~~~~--~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~g~gl~~~~~~ 79 (103)
T cd00075 3 QVLLNLLSNAIKHTPEGGGRITISVER--DGDHLEIRVEDNGPGIPEEDLERIFERFSD-GSRSRKGGGTGLGLSIVKKL 79 (103)
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHHhhhhhc-CCCCCCCCccccCHHHHHHH
Confidence 489999999999842212556666654 334578999999999999999887663211 1112344567888763 2
Q ss_pred ccccCCEEEEEeee
Q 008268 188 TMRLGADVIVFSRA 201 (572)
Q Consensus 188 s~~lg~~v~V~Sr~ 201 (572)
..+++..+.+.+..
T Consensus 80 ~~~~~g~~~~~~~~ 93 (103)
T cd00075 80 VELHGGRIEVESEP 93 (103)
T ss_pred HHHcCCEEEEEeCC
Confidence 44567788887765
No 43
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=97.52 E-value=0.0002 Score=76.49 Aligned_cols=89 Identities=21% Similarity=0.209 Sum_probs=63.7
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccc---
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK--- 185 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~K--- 185 (572)
...++.+||+||+.+ +...|.|.+.. .++...|+|.|||.||+++++.+++..++....... -+-+|+|+.
T Consensus 332 l~~il~NLl~NA~k~---~~~~i~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~~-~~g~GlGL~iv~ 405 (435)
T PRK09467 332 IKRALANLVVNAARY---GNGWIKVSSGT--EGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSARG-SSGTGLGLAIVK 405 (435)
T ss_pred HHHHHHHHHHHHHHh---CCCeEEEEEEe--cCCEEEEEEEecCCCcCHHHHHHhcCCcccCCCCCC-CCCeehhHHHHH
Confidence 346899999999987 56677777765 234567999999999999999999986554222211 234677763
Q ss_pred ccccccCCEEEEEeeeCC
Q 008268 186 TSTMRLGADVIVFSRATH 203 (572)
Q Consensus 186 sAs~~lg~~v~V~Sr~~~ 203 (572)
...-..|+++.+.+...+
T Consensus 406 ~i~~~~~g~l~i~~~~~~ 423 (435)
T PRK09467 406 RIVDQHNGKVELGNSEEG 423 (435)
T ss_pred HHHHHCCCEEEEEECCCC
Confidence 334557899999887643
No 44
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.50 E-value=0.00033 Score=85.51 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=61.2
Q ss_pred HHHHHHhhccchhhh-hC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH--------Hhhh-cCcccccC----C
Q 008268 110 FGAIAELLDNAVDEV-QN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA----N 174 (572)
Q Consensus 110 f~AIaELIDNAiDA~-~~-~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~--------~~~~-~G~S~K~~----~ 174 (572)
.-.+-|+||||+|.. .+ .++.|.|.|.. ....|+|.|||.||+-+--. -+|+ +-.+.+.+ .
T Consensus 79 ~kifdEIldNAvDe~~r~g~~~~I~V~I~~----~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yK 154 (1465)
T PLN03237 79 YKIFDEILVNAADNKQRDPKMDSLRVVIDV----EQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKK 154 (1465)
T ss_pred hhhHHHHhhhhHhHHhhcCCCCEEEEEEEc----CCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcce
Confidence 357899999999975 32 36888888863 23589999999999865211 1233 22344443 3
Q ss_pred CCcccccccccccccccCCEEEEEeee
Q 008268 175 KTIGQYGNGFKTSTMRLGADVIVFSRA 201 (572)
Q Consensus 175 ~~iG~fGiG~KsAs~~lg~~v~V~Sr~ 201 (572)
-.-|+.|+|.|. +-.|...+.|.++.
T Consensus 155 vSGGlhGVGasv-vNaLS~~f~Vev~D 180 (1465)
T PLN03237 155 TTGGRNGYGAKL-TNIFSTEFVIETAD 180 (1465)
T ss_pred eeccccccCccc-cccccCeeEEEEEE
Confidence 467999999875 45588999999983
No 45
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.50 E-value=0.00019 Score=71.10 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=63.8
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCC--Ccccccccc
Q 008268 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANK--TIGQYGNGF 184 (572)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~--~iG~fGiG~ 184 (572)
.|.-.++.+||+||++|.. ...|.|.+... ++...|.|.|||.||+++.+.++|..+++.+.... ++|.+. .
T Consensus 227 ~~l~~vl~nLi~NAi~~~~--~~~i~i~~~~~--~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~g~GlGL~i--~ 300 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTP--GGEITISVRQD--DEQVTISVEDTGPGIPEEELERIFEPFFRTDKSRSGTGLGLAI--V 300 (336)
T ss_pred HHHHHHHHHHHHHHhccCC--CCeEEEEEEec--CCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCCCCCccHHH--H
Confidence 3455599999999999932 47788877652 22468999999999999999999998887776522 333333 2
Q ss_pred cccccccCCEEEEEeee
Q 008268 185 KTSTMRLGADVIVFSRA 201 (572)
Q Consensus 185 KsAs~~lg~~v~V~Sr~ 201 (572)
|......|+.+.+.|..
T Consensus 301 ~~~~~~~~g~i~~~~~~ 317 (336)
T COG0642 301 KRIVELHGGTISVESEP 317 (336)
T ss_pred HHHHHHcCCEEEEEecC
Confidence 33345667777777776
No 46
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.48 E-value=0.0002 Score=76.44 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=62.8
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-CCCcccccccc--
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGF-- 184 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-~~~iG~fGiG~-- 184 (572)
....++.|||+||+.+.. ....|.|.+.. .++...|+|.|||.||+++.+.++|..++..+.. ...-+-.|+|+
T Consensus 353 ~l~~~~~nll~Nai~~~~-~~~~I~i~~~~--~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i 429 (457)
T TIGR01386 353 MFRRAISNLLSNALRHTP-DGGTITVRIER--RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAI 429 (457)
T ss_pred HHHHHHHHHHHHHHHcCC-CCceEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHH
Confidence 345689999999999821 13467777765 3355689999999999999999999866654432 11222356665
Q ss_pred -cccccccCCEEEEEe
Q 008268 185 -KTSTMRLGADVIVFS 199 (572)
Q Consensus 185 -KsAs~~lg~~v~V~S 199 (572)
|...-++|+.+.+.+
T Consensus 430 ~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 430 VRSIMEAHGGRASAES 445 (457)
T ss_pred HHHHHHHCCCEEEEEe
Confidence 344567899999998
No 47
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.44 E-value=0.00024 Score=75.99 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=65.6
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccc-
Q 008268 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK- 185 (572)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~K- 185 (572)
.+...++.+||.||+.+. .....|.|.+.. .++...|+|.|||.||+++++.+.|...++.+.....-+-.|+|+.
T Consensus 367 ~~l~~vl~nli~Na~~~~-~~~~~i~i~~~~--~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL~i 443 (475)
T PRK11100 367 FLLRQALGNLLDNAIDFS-PEGGTITLSAEV--DGEQVALSVEDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAF 443 (475)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCEEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhHHH
Confidence 356679999999999972 124567777765 3456789999999999999999999866544331111223355553
Q ss_pred --ccccccCCEEEEEeeeCC
Q 008268 186 --TSTMRLGADVIVFSRATH 203 (572)
Q Consensus 186 --sAs~~lg~~v~V~Sr~~~ 203 (572)
.-...+|+.+.+.|...+
T Consensus 444 ~~~~~~~~~G~i~i~s~~~~ 463 (475)
T PRK11100 444 VREVARLHGGEVTLRNRPEG 463 (475)
T ss_pred HHHHHHHCCCEEEEEEcCCC
Confidence 345568999999997643
No 48
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.43 E-value=0.00017 Score=75.25 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=64.8
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccc-
Q 008268 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK- 185 (572)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~K- 185 (572)
.|.-.++.+||+||+.+.. ....|.|.+.. .++...|.|.|||.||+++++.+++..++..+. .-+-.|+|+.
T Consensus 246 ~~l~~il~nLi~NA~k~~~-~~~~I~I~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~g~GlGL~i 319 (356)
T PRK10755 246 TLLRLLLRNLVENAHRYSP-EGSTITIKLSQ--EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS---RYGGIGLGLSI 319 (356)
T ss_pred HHHHHHHHHHHHHHHhhCC-CCCcEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC---CCCCcCHHHHH
Confidence 4666799999999998731 23557777754 335578999999999999999999986553221 1233566653
Q ss_pred --ccccccCCEEEEEeeeC
Q 008268 186 --TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 186 --sAs~~lg~~v~V~Sr~~ 202 (572)
...-.+|+.+.+.|...
T Consensus 320 ~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 320 VSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHCCCEEEEEECCC
Confidence 44566899999999875
No 49
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.43 E-value=0.00017 Score=82.98 Aligned_cols=86 Identities=21% Similarity=0.252 Sum_probs=63.1
Q ss_pred HHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHH-HHHhhhcCcccccCCCCcccccccc---c
Q 008268 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPES-LRKCMSLGYSTKKANKTIGQYGNGF---K 185 (572)
Q Consensus 110 f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~-l~~~~~~G~S~K~~~~~iG~fGiG~---K 185 (572)
..++.+||+||+++.. ....|.|.+.. .++...|+|.|||.||+++. .++.|...++.+.. -.|+|+ |
T Consensus 581 ~~vl~nLl~NAik~~~-~~~~I~I~~~~--~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~~-----G~GLGL~i~~ 652 (679)
T TIGR02916 581 ERVLGHLVQNALEATP-GEGRVAIRVER--ECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKGA-----GMGIGVYECR 652 (679)
T ss_pred HHHHHHHHHHHHHhCC-CCCcEEEEEEE--cCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCCC-----CcchhHHHHH
Confidence 4588999999999832 23457777765 23567899999999999999 77888876666543 235554 3
Q ss_pred ccccccCCEEEEEeeeCC
Q 008268 186 TSTMRLGADVIVFSRATH 203 (572)
Q Consensus 186 sAs~~lg~~v~V~Sr~~~ 203 (572)
...-.+|+++.|.|...+
T Consensus 653 ~iv~~~gG~i~v~s~~g~ 670 (679)
T TIGR02916 653 QYVEEIGGRIEVESTPGQ 670 (679)
T ss_pred HHHHHcCCEEEEEecCCC
Confidence 445679999999997643
No 50
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=97.41 E-value=0.00028 Score=73.14 Aligned_cols=92 Identities=10% Similarity=0.100 Sum_probs=61.8
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEcc----CCC----CCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccc
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIM----KDN----SPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQY 180 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~----~~~----~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~f 180 (572)
...++.+||+||+++.......|.|...... .++ ...|.|.|||.||+++...++|..+++.+....++|.+
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~~g~GlGL~ 317 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLS 317 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCCCCccCCHH
Confidence 4578999999999985323445666543210 001 13689999999999999999998766665433333333
Q ss_pred cccccccccccCCEEEEEeeeC
Q 008268 181 GNGFKTSTMRLGADVIVFSRAT 202 (572)
Q Consensus 181 GiG~KsAs~~lg~~v~V~Sr~~ 202 (572)
- .|......|+.+.|.|...
T Consensus 318 i--~~~iv~~~gG~i~~~s~~~ 337 (348)
T PRK11073 318 I--ARNLIDQHSGKIEFTSWPG 337 (348)
T ss_pred H--HHHHHHHcCCeEEEEecCC
Confidence 3 2455667899999998753
No 51
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.40 E-value=0.00025 Score=76.31 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=65.3
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-CCCccccccccc--
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK-- 185 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-~~~iG~fGiG~K-- 185 (572)
...++.+||+||+.+.. ....|.|.+.. .++...|.|.|||.||+++++.+.+...++.+.. ....|-.|+|+.
T Consensus 353 l~qvl~nll~NAi~~~~-~~~~I~i~~~~--~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv 429 (466)
T PRK10549 353 LMQLFNNLLENSLRYTD-SGGSLHISAEQ--RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAIC 429 (466)
T ss_pred HHHHHHHHHHHHHHhCC-CCCEEEEEEEE--cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHH
Confidence 45689999999999832 12457777665 3355679999999999999999999855543322 233445677764
Q ss_pred -ccccccCCEEEEEeeeCC
Q 008268 186 -TSTMRLGADVIVFSRATH 203 (572)
Q Consensus 186 -sAs~~lg~~v~V~Sr~~~ 203 (572)
.....+|+++.+.+...+
T Consensus 430 ~~i~~~~~G~l~~~s~~~~ 448 (466)
T PRK10549 430 LNIVEAHNGRIIAAHSPFG 448 (466)
T ss_pred HHHHHHcCCEEEEEECCCC
Confidence 345678999999988643
No 52
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=97.36 E-value=0.00031 Score=78.64 Aligned_cols=89 Identities=22% Similarity=0.351 Sum_probs=65.3
Q ss_pred HHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccc---c
Q 008268 111 GAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK---T 186 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~K---s 186 (572)
.++.+||.||+||+..- ...|+|.... .++...|.|.|||+||.++.+.+.|..-+++|...+++ |+|+- .
T Consensus 500 QVLvNLl~NALDA~~~~~~~~i~i~~~~--~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~~GL---GLGLaIS~~ 574 (603)
T COG4191 500 QVLVNLLQNALDAMAGQEDRRLSIRAQR--EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPVGKGL---GLGLAISQN 574 (603)
T ss_pred HHHHHHHHHHHHHhcCCCCCeeEEEEEe--cCCeEEEEEccCCCCCCHHHHHhhcCCccccCcccCCc---chhHHHHHH
Confidence 68999999999997532 3457777765 45678899999999999999999999766667543433 33432 2
Q ss_pred cccccCCEEEEEeeeCCC
Q 008268 187 STMRLGADVIVFSRATHE 204 (572)
Q Consensus 187 As~~lg~~v~V~Sr~~~~ 204 (572)
..-.+|+.+.|.+-..++
T Consensus 575 i~~d~GGsL~v~n~~~~G 592 (603)
T COG4191 575 IARDLGGSLEVANHPEGG 592 (603)
T ss_pred HHHHhCCeEEeecCCCCc
Confidence 345689999999655443
No 53
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.30 E-value=0.00037 Score=77.19 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=62.5
Q ss_pred HHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccc---c
Q 008268 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK---T 186 (572)
Q Consensus 110 f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~K---s 186 (572)
..++.+||+||+.+ ....+.|.+.. .++...|.|.|||.||+++++.++|..++..+... +-.|+|+. .
T Consensus 380 ~~vl~NLi~NAik~---~~~~i~I~~~~--~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~~---~G~GLGL~Ivk~ 451 (485)
T PRK10815 380 MEVMGNVLDNACKY---CLEFVEISARQ--TDEHLHIVVEDDGPGIPESKRELIFDRGQRADTLR---PGQGLGLSVARE 451 (485)
T ss_pred HHHHHHHHHHHHHh---cCCcEEEEEEE--eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCC---CCcchhHHHHHH
Confidence 46899999999998 34456676654 23456799999999999999999998655432221 12467763 4
Q ss_pred cccccCCEEEEEeeeCC
Q 008268 187 STMRLGADVIVFSRATH 203 (572)
Q Consensus 187 As~~lg~~v~V~Sr~~~ 203 (572)
..-.+|+++.+.|...+
T Consensus 452 iv~~~gG~i~v~s~~~~ 468 (485)
T PRK10815 452 ITEQYEGKISAGDSPLG 468 (485)
T ss_pred HHHHcCCEEEEEECCCC
Confidence 45678999999988654
No 54
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.28 E-value=0.00058 Score=68.95 Aligned_cols=93 Identities=20% Similarity=0.233 Sum_probs=63.2
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-CCCccccccccc-
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK- 185 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-~~~iG~fGiG~K- 185 (572)
....++.+||.||+++.. ....|.|.+.. .++...|.|.|||.||+++.+.++|...+..+.. ....+-.|+|+.
T Consensus 229 ~l~~vl~nll~Nai~~~~-~~~~i~i~~~~--~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~ 305 (333)
T TIGR02966 229 ELRSAFSNLVSNAIKYTP-EGGTITVRWRR--DGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAI 305 (333)
T ss_pred HHHHHHHHHHHHhheeCC-CCCeEEEEEEE--cCCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHH
Confidence 345689999999999732 13456666654 3345679999999999999999999855432221 111222366653
Q ss_pred --ccccccCCEEEEEeeeCC
Q 008268 186 --TSTMRLGADVIVFSRATH 203 (572)
Q Consensus 186 --sAs~~lg~~v~V~Sr~~~ 203 (572)
...-.+|+++.+.|....
T Consensus 306 ~~~~~~~~gG~i~~~s~~~~ 325 (333)
T TIGR02966 306 VKHVLSRHHARLEIESELGK 325 (333)
T ss_pred HHHHHHHCCCEEEEEecCCC
Confidence 345568999999998643
No 55
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.26 E-value=0.00054 Score=80.62 Aligned_cols=88 Identities=20% Similarity=0.205 Sum_probs=64.0
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEc-------------cCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCC
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNI-------------MKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANK 175 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~-------------~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~ 175 (572)
...++.+||+||+.+.. ....|.|.+... ..++...|.|.|||.||+++++.++|...++.+.
T Consensus 561 L~qvl~NLl~NAik~~~-~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~--- 636 (828)
T PRK13837 561 LQQVLMNLCSNAAQAMD-GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA--- 636 (828)
T ss_pred HHHHHHHHHHHHHHHcc-cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC---
Confidence 45789999999999843 234566766543 1133457999999999999999999986665543
Q ss_pred Ccccccccc---cccccccCCEEEEEeeeC
Q 008268 176 TIGQYGNGF---KTSTMRLGADVIVFSRAT 202 (572)
Q Consensus 176 ~iG~fGiG~---KsAs~~lg~~v~V~Sr~~ 202 (572)
+-.|+|+ |...-.+|+++.|.|...
T Consensus 637 --~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 637 --GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred --CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 3346665 345667999999999864
No 56
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=97.20 E-value=0.00016 Score=84.58 Aligned_cols=119 Identities=23% Similarity=0.267 Sum_probs=78.1
Q ss_pred ccCccCccccCCCcCcccceeccc-ccccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEE
Q 008268 73 TYAANITIKSTPVQGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFID 150 (572)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~v~~-~fLhSnatsh~~~f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~D 150 (572)
+|+. .......++++++.-| ||+-|... .-....+.|+||||+|...++ ++.|.|.+.. ...|+|.|
T Consensus 99 ~Y~a----~~I~vLeGLEaVRkRPGMYIGst~~--~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~-----DgsItV~D 167 (903)
T PTZ00109 99 EYDA----DDIVVLEGLEAVRKRPGMYIGNTDE--KGLHQLLFEILDNSVDEYLAGECNKITVVLHK-----DGSVEISD 167 (903)
T ss_pred CCCh----HhCeehhccHHHhcCCCceeCCCCC--CcceEEEEEEeeccchhhccCCCcEEEEEEcC-----CCeEEEEe
Confidence 4776 2333467888888877 44433321 222235789999999987665 8888888853 24799999
Q ss_pred CCCCCCHHHHH--------Hhhh-------cCcc------------------ccc-------------------C-CCCc
Q 008268 151 DGGGMDPESLR--------KCMS-------LGYS------------------TKK-------------------A-NKTI 177 (572)
Q Consensus 151 NG~GMs~e~l~--------~~~~-------~G~S------------------~K~-------------------~-~~~i 177 (572)
||.||+-+.-. -+|+ |+.. .++ . .-.-
T Consensus 168 nGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSG 247 (903)
T PTZ00109 168 NGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSS 247 (903)
T ss_pred CCccccccccccCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecC
Confidence 99999874322 1222 2111 000 0 2357
Q ss_pred ccccccccccccccCCEEEEEeeeCC
Q 008268 178 GQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 178 G~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
|+.|+|.+ ++-.|...+.|.+++.+
T Consensus 248 GLHGVG~S-VVNALS~~l~VeV~RdG 272 (903)
T PTZ00109 248 GLHGVGLS-VVNALSSFLKVDVFKGG 272 (903)
T ss_pred cCCCccee-eeeeccCeEEEEEEECC
Confidence 99999985 56779999999999864
No 57
>PRK10490 sensor protein KdpD; Provisional
Probab=97.05 E-value=0.0009 Score=79.74 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=64.4
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccc---
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF--- 184 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~--- 184 (572)
....++.+||+||+.+.. ....|.|.... .++...|.|.|||.||+++++.++|...++.+... ..+-.|+|+
T Consensus 778 ~L~qVL~NLL~NAik~s~-~g~~I~I~~~~--~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~-~~~G~GLGL~Iv 853 (895)
T PRK10490 778 LFERVLINLLENAVKYAG-AQAEIGIDAHV--EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKES-AIPGVGLGLAIC 853 (895)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCeEEEEEEE--eCCEEEEEEEECCCCCCHHHHHHhcCCCccCCCCC-CCCCccHHHHHH
Confidence 455789999999999832 23456776654 33556899999999999999999998555433321 122246665
Q ss_pred cccccccCCEEEEEeeeCC
Q 008268 185 KTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 185 KsAs~~lg~~v~V~Sr~~~ 203 (572)
|...-.+|+++.+.|...+
T Consensus 854 k~ive~hGG~I~v~s~~~~ 872 (895)
T PRK10490 854 RAIVEVHGGTIWAENRPEG 872 (895)
T ss_pred HHHHHHcCCEEEEEECCCC
Confidence 3445568999999987643
No 58
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.03 E-value=0.0014 Score=78.12 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=63.9
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccC-CCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccc---
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMK-DNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF--- 184 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~-~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~--- 184 (572)
.-.++.+||.||+.+.. ...|.|.+..... ++...|.|.|+|.||+++++.++|...++.+...+..+--|+|+
T Consensus 566 L~QVL~NLL~NAik~t~--~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~~~~GtGLGLaI~ 643 (894)
T PRK10618 566 LRKILLLLLNYAITTTA--YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDRYGKASGLTFFLC 643 (894)
T ss_pred HHHHHHHHHHHHHHhCC--CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCCCCCCcChhHHHH
Confidence 34689999999999843 2346666654222 23467999999999999999999984444443222222247775
Q ss_pred cccccccCCEEEEEeeeCCC
Q 008268 185 KTSTMRLGADVIVFSRATHE 204 (572)
Q Consensus 185 KsAs~~lg~~v~V~Sr~~~~ 204 (572)
|...-.+|+++.|.|....+
T Consensus 644 k~Lve~~GG~I~v~S~~g~G 663 (894)
T PRK10618 644 NQLCRKLGGHLTIKSREGLG 663 (894)
T ss_pred HHHHHHcCCEEEEEECCCCc
Confidence 33455689999999987543
No 59
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=97.03 E-value=0.001 Score=77.17 Aligned_cols=92 Identities=12% Similarity=0.107 Sum_probs=65.6
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-CCCccccccccc-
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK- 185 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-~~~iG~fGiG~K- 185 (572)
....++.+||+||+++... ...|.|.+.. .++...|+|.|||.||+++++.++|...++.+.. ...-+-.|+|+.
T Consensus 597 ~L~~il~NLI~NAik~s~~-~~~I~I~~~~--~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~I 673 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSPE-DGLIEVGLSQ--NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYI 673 (703)
T ss_pred HHHHHHHHHHHHHHHHCCC-CCeEEEEEEE--cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHH
Confidence 3446899999999998422 3447776654 3355679999999999999999999866654432 222224677764
Q ss_pred --ccccccCCEEEEEeeeC
Q 008268 186 --TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 186 --sAs~~lg~~v~V~Sr~~ 202 (572)
......|+++.+.+...
T Consensus 674 vr~Iv~~~gG~I~v~s~~~ 692 (703)
T TIGR03785 674 VRLIADFHQGRIQAENRQQ 692 (703)
T ss_pred HHHHHHHcCCEEEEEECCC
Confidence 45667899999988764
No 60
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=96.99 E-value=0.0014 Score=76.85 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=61.3
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccC-CC--CCeEEEEECCCCCCHHHHHHhhhcCcc-cccCCCCcccccccc
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMK-DN--SPALVFIDDGGGMDPESLRKCMSLGYS-TKKANKTIGQYGNGF 184 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~-~~--~~~I~I~DNG~GMs~e~l~~~~~~G~S-~K~~~~~iG~fGiG~ 184 (572)
...++.+||+||+.+... ..|.|.+..... ++ ...|.|.|||.||+++++.++|...+. .+......|-.|+|+
T Consensus 409 l~~vl~NLl~NAik~~~~--g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL 486 (919)
T PRK11107 409 LQQIITNLVGNAIKFTES--GNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGL 486 (919)
T ss_pred HHHHHHHHHHHHhhcCCC--CcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhH
Confidence 446899999999998432 334444432111 11 356899999999999999999873332 111123344567776
Q ss_pred ---cccccccCCEEEEEeeeCCC
Q 008268 185 ---KTSTMRLGADVIVFSRATHE 204 (572)
Q Consensus 185 ---KsAs~~lg~~v~V~Sr~~~~ 204 (572)
|...-.+|+++.|.|....+
T Consensus 487 ~i~~~i~~~~gG~i~v~s~~~~G 509 (919)
T PRK11107 487 VITQKLVNEMGGDISFHSQPNRG 509 (919)
T ss_pred HHHHHHHHHhCCEEEEEecCCCC
Confidence 34455689999999987543
No 61
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.96 E-value=0.0012 Score=77.47 Aligned_cols=89 Identities=17% Similarity=0.232 Sum_probs=63.5
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccc--
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK-- 185 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~K-- 185 (572)
+...+|.+||+||+.+. ....|.|.+.. .++...|+|.|||.||+++++.++|...+..+.. .+-.|+|+.
T Consensus 513 ~l~~il~NLl~NAik~~--~~g~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~ 585 (921)
T PRK15347 513 RLRQILVNLLGNAVKFT--ETGGIRLRVKR--HEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADTH---SQGTGLGLTIA 585 (921)
T ss_pred HHHHHHHHHHHHHhhcC--CCCCEEEEEEE--cCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCCC---CCCCchHHHHH
Confidence 34578999999999984 23447777654 3356689999999999999999999854443322 233566753
Q ss_pred -ccccccCCEEEEEeeeCC
Q 008268 186 -TSTMRLGADVIVFSRATH 203 (572)
Q Consensus 186 -sAs~~lg~~v~V~Sr~~~ 203 (572)
...-.+|+++.|.|....
T Consensus 586 ~~~~~~~gG~i~i~s~~~~ 604 (921)
T PRK15347 586 SSLAKMMGGELTLFSTPGV 604 (921)
T ss_pred HHHHHHcCCEEEEEecCCC
Confidence 335568999999887643
No 62
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=96.90 E-value=0.0014 Score=76.18 Aligned_cols=92 Identities=23% Similarity=0.230 Sum_probs=64.9
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC--CCCcccccccc--
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA--NKTIGQYGNGF-- 184 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~--~~~iG~fGiG~-- 184 (572)
...++.+||+||+++. ....|.|.+.... ++...|.|.|||.||+++++.++|...++.|.. ....+--|+|+
T Consensus 399 l~qvl~NLl~NAik~~--~~g~v~i~~~~~~-~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i 475 (779)
T PRK11091 399 LRQILWNLISNAVKFT--QQGGVTVRVRYEE-GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAV 475 (779)
T ss_pred HHHHHHHHHHHHHHhC--CCCcEEEEEEEcc-CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHH
Confidence 4468999999999984 2345666665521 345689999999999999999999855554421 22233446665
Q ss_pred -cccccccCCEEEEEeeeCC
Q 008268 185 -KTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 185 -KsAs~~lg~~v~V~Sr~~~ 203 (572)
|...-.+|+++.|.|....
T Consensus 476 ~~~iv~~~gG~i~v~s~~g~ 495 (779)
T PRK11091 476 SKRLAQAMGGDITVTSEEGK 495 (779)
T ss_pred HHHHHHHcCCEEEEEecCCC
Confidence 3445678999999998654
No 63
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.88 E-value=0.0022 Score=75.96 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=64.5
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCC-CeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccc-
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNS-PALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK- 185 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~-~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~K- 185 (572)
....++.+||+||+.+. ....|.|.+...+ +. ..|.|.|+|.||+++++.++|...++.+ .....|-.|+|+.
T Consensus 579 ~l~~il~nLi~NAik~~--~~g~i~i~~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-~~~~~~g~GLGL~i 653 (968)
T TIGR02956 579 RIRQVLINLVGNAIKFT--DRGSVVLRVSLND--DSSLLFEVEDTGCGIAEEEQATLFDAFTQAD-GRRRSGGTGLGLAI 653 (968)
T ss_pred HHHHHHHHHHHHHHhhC--CCCeEEEEEEEcC--CCeEEEEEEeCCCCCCHHHHHHHHhhhhccC-CCCCCCCccHHHHH
Confidence 34568999999999983 2345777776532 34 7899999999999999999998433333 2223344577763
Q ss_pred --ccccccCCEEEEEeeeCC
Q 008268 186 --TSTMRLGADVIVFSRATH 203 (572)
Q Consensus 186 --sAs~~lg~~v~V~Sr~~~ 203 (572)
...-.+|+++.|.|....
T Consensus 654 ~~~l~~~~gG~i~~~s~~~~ 673 (968)
T TIGR02956 654 SQRLVEAMDGELGVESELGV 673 (968)
T ss_pred HHHHHHHcCCEEEEEecCCC
Confidence 345678999999988653
No 64
>PRK09835 sensor kinase CusS; Provisional
Probab=96.83 E-value=0.002 Score=69.55 Aligned_cols=91 Identities=24% Similarity=0.251 Sum_probs=62.6
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-CCCcccccccc--
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGF-- 184 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-~~~iG~fGiG~-- 184 (572)
....++.+||+||+.+.. ....|.|.+.. .++...|.|.|||.||+++++.++|...+..... ...-+-.|+|+
T Consensus 375 ~l~~vl~nll~Na~~~~~-~~~~I~i~~~~--~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i 451 (482)
T PRK09835 375 MLRRAISNLLSNALRYTP-AGEAITVRCQE--VDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAI 451 (482)
T ss_pred HHHHHHHHHHHHHHhcCC-CCCeEEEEEEE--eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHH
Confidence 355789999999999732 13357777654 2345679999999999999999998744432221 11223356665
Q ss_pred -cccccccCCEEEEEeee
Q 008268 185 -KTSTMRLGADVIVFSRA 201 (572)
Q Consensus 185 -KsAs~~lg~~v~V~Sr~ 201 (572)
|.....+|+++.+.|..
T Consensus 452 ~~~i~~~~~g~i~~~s~~ 469 (482)
T PRK09835 452 VKSIVVAHKGTVAVTSDA 469 (482)
T ss_pred HHHHHHHCCCEEEEEECC
Confidence 44566789999998864
No 65
>PRK10547 chemotaxis protein CheA; Provisional
Probab=96.82 E-value=0.0024 Score=73.76 Aligned_cols=90 Identities=19% Similarity=0.336 Sum_probs=62.7
Q ss_pred HHHHhhccchhhhhC-----------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH-------------------
Q 008268 112 AIAELLDNAVDEVQN-----------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR------------------- 161 (572)
Q Consensus 112 AIaELIDNAiDA~~~-----------~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~------------------- 161 (572)
.|.+||.||+|+-.. ....|.|.... .++...|.|.|||.||+++.+.
T Consensus 389 pL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~--~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~ 466 (670)
T PRK10547 389 PLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH--QGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEV 466 (670)
T ss_pred HHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEE--cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHH
Confidence 356899999997311 12346676654 3455679999999999998764
Q ss_pred --HhhhcCcccccCCCCcccccccc---cccccccCCEEEEEeeeCC
Q 008268 162 --KCMSLGYSTKKANKTIGQYGNGF---KTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 162 --~~~~~G~S~K~~~~~iG~fGiG~---KsAs~~lg~~v~V~Sr~~~ 203 (572)
.+|..|+|++.......-.|+|| |.....+++.+.|.|+...
T Consensus 467 ~~lIF~pgfst~~~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~ 513 (670)
T PRK10547 467 GMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGK 513 (670)
T ss_pred HHHhhcCCcccccccccCCCCchhHHHHHHHHHHcCCEEEEEecCCC
Confidence 35667888765433344458887 4556689999999998643
No 66
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.80 E-value=0.0024 Score=75.30 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=63.4
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccc---
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF--- 184 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~--- 184 (572)
....++.+||+||+.+. ....|.|.+.. .++...|.|.|||.||+++++.++|...+..+.. .|-.|+|+
T Consensus 561 ~l~qil~NLl~NAik~~--~~g~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~ 633 (914)
T PRK11466 561 RIRQVITNLLSNALRFT--DEGSIVLRSRT--DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK---RGGTGLGLTIS 633 (914)
T ss_pred HHHHHHHHHHHHHHHhC--CCCeEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHHhchhhcCCCC---CCCCcccHHHH
Confidence 34568999999999983 34457776654 2345679999999999999999999854432211 23346665
Q ss_pred cccccccCCEEEEEeeeCC
Q 008268 185 KTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 185 KsAs~~lg~~v~V~Sr~~~ 203 (572)
|...-.+|+++.|.|....
T Consensus 634 ~~l~~~~gG~i~v~s~~~~ 652 (914)
T PRK11466 634 SRLAQAMGGELSATSTPEV 652 (914)
T ss_pred HHHHHHcCCEEEEEecCCC
Confidence 3345678999999998653
No 67
>PRK10337 sensor protein QseC; Provisional
Probab=96.75 E-value=0.0019 Score=69.46 Aligned_cols=86 Identities=21% Similarity=0.213 Sum_probs=59.5
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccc--
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK-- 185 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~K-- 185 (572)
....++.+||+||+.+... ...|.|.+.. ..|+|.|||.||+++++.++|...+..+. ...+-+|+|+.
T Consensus 352 ~l~~vl~Nli~NA~k~~~~-~~~i~i~~~~------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~--~~~~g~GlGL~iv 422 (449)
T PRK10337 352 LLSLLVRNLLDNAIRYSPQ-GSVVDVTLNA------RNFTVRDNGPGVTPEALARIGERFYRPPG--QEATGSGLGLSIV 422 (449)
T ss_pred HHHHHHHHHHHHHHhhCCC-CCeEEEEEEe------eEEEEEECCCCCCHHHHHHhcccccCCCC--CCCCccchHHHHH
Confidence 3445889999999998311 2346665532 26999999999999999999875443221 12234677764
Q ss_pred -ccccccCCEEEEEeeeC
Q 008268 186 -TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 186 -sAs~~lg~~v~V~Sr~~ 202 (572)
.....+|+++.+.+...
T Consensus 423 ~~i~~~~gg~l~~~s~~~ 440 (449)
T PRK10337 423 RRIAKLHGMNVSFGNAPE 440 (449)
T ss_pred HHHHHHcCCEEEEEecCC
Confidence 44567899999988764
No 68
>PRK13557 histidine kinase; Provisional
Probab=96.73 E-value=0.0032 Score=68.57 Aligned_cols=90 Identities=27% Similarity=0.321 Sum_probs=61.0
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEcc-------------CCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCC
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIM-------------KDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANK 175 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~-------------~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~ 175 (572)
...++.+|+.||+++...+ ..+.|...... .++...|.|.|||.||+++...++|...++.+..
T Consensus 278 l~~vl~nll~NA~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~-- 354 (540)
T PRK13557 278 AEVALLNVLINARDAMPEG-GRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE-- 354 (540)
T ss_pred HHHHHHHHHHHHHHhcccC-CeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC--
Confidence 3467999999999985322 33555443210 1233479999999999999999999866665532
Q ss_pred Ccccccccc---cccccccCCEEEEEeeeC
Q 008268 176 TIGQYGNGF---KTSTMRLGADVIVFSRAT 202 (572)
Q Consensus 176 ~iG~fGiG~---KsAs~~lg~~v~V~Sr~~ 202 (572)
.+-.|+|+ |.....+|+.+.|.|...
T Consensus 355 -~~g~GlGL~i~~~~v~~~gG~i~~~s~~~ 383 (540)
T PRK13557 355 -GKGTGLGLSMVYGFAKQSGGAVRIYSEVG 383 (540)
T ss_pred -CCCCCccHHHHHHHHHHCCCEEEEEecCC
Confidence 12235554 445667999999998864
No 69
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=96.71 E-value=0.0035 Score=76.30 Aligned_cols=95 Identities=17% Similarity=0.171 Sum_probs=61.5
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccC-CCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccc-
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMK-DNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK- 185 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~-~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~K- 185 (572)
....++.+||+||+++...+...|.+....... .....|.|.|||.||+++++.++|...++.+.. ...+-.|+|+.
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~-~~~~G~GLGL~i 906 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAG-RQQTGSGLGLMI 906 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccccccC-CCCCCcCchHHH
Confidence 455789999999999853333233332221111 122458899999999999999999855543332 12223577763
Q ss_pred --ccccccCCEEEEEeeeCC
Q 008268 186 --TSTMRLGADVIVFSRATH 203 (572)
Q Consensus 186 --sAs~~lg~~v~V~Sr~~~ 203 (572)
...-.+|+++.|.|....
T Consensus 907 ~~~iv~~~gG~i~v~s~~~~ 926 (1197)
T PRK09959 907 CKELIKNMQGDLSLESHPGI 926 (1197)
T ss_pred HHHHHHHcCCEEEEEeCCCC
Confidence 335568999999998643
No 70
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=96.66 E-value=0.0037 Score=74.78 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=62.9
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-CCCccccccccc--
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK-- 185 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-~~~iG~fGiG~K-- 185 (572)
.-.+|.+||+||+.+.. ...|.|.+.. .++...|.|.|+|.||+++++.++|...+..+.. ....+-.|+|+.
T Consensus 563 L~qvl~NLl~NAik~t~--~G~I~I~v~~--~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~ 638 (924)
T PRK10841 563 LQQVISNLLSNAIKFTD--TGCIVLHVRV--DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAIC 638 (924)
T ss_pred HHHHHHHHHHHHHhhCC--CCcEEEEEEE--eCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHHH
Confidence 44689999999999842 3346666654 2345679999999999999999999844332221 222233577764
Q ss_pred -ccccccCCEEEEEeeeCC
Q 008268 186 -TSTMRLGADVIVFSRATH 203 (572)
Q Consensus 186 -sAs~~lg~~v~V~Sr~~~ 203 (572)
...-.+|+++.|.|....
T Consensus 639 k~lv~~~gG~I~v~S~~g~ 657 (924)
T PRK10841 639 EKLINMMDGDISVDSEPGM 657 (924)
T ss_pred HHHHHHCCCEEEEEEcCCC
Confidence 335568999999998643
No 71
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=96.53 E-value=0.0044 Score=71.91 Aligned_cols=91 Identities=16% Similarity=0.244 Sum_probs=62.8
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cCcccccCCCCcccccccc---
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKANKTIGQYGNGF--- 184 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~~~~iG~fGiG~--- 184 (572)
.-.+|.+|||||.-.. ...++|.|.... ..+...+.|.|||.||++++++++|. |-+-.|.+. .-|. |+|+
T Consensus 776 ieQVLiNLleNA~Kya-p~~s~I~I~~~~--~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~-~~G~-GLGLsIc 850 (890)
T COG2205 776 IEQVLINLLENALKYA-PPGSEIRINAGV--ERENVVFSVIDEGPGIPEGELERIFDKFYRGNKESA-TRGV-GLGLAIC 850 (890)
T ss_pred HHHHHHHHHHHHHhhC-CCCCeEEEEEEE--ecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC-CCCc-cccHHHH
Confidence 3468999999999872 124557777765 33577899999999999999999998 544444322 1111 4443
Q ss_pred cccccccCCEEEEEeeeCCC
Q 008268 185 KTSTMRLGADVIVFSRATHE 204 (572)
Q Consensus 185 KsAs~~lg~~v~V~Sr~~~~ 204 (572)
+...-..|+++.+.++..++
T Consensus 851 ~~iv~ahgG~I~a~~~~~gG 870 (890)
T COG2205 851 RGIVEAHGGTISAENNPGGG 870 (890)
T ss_pred HHHHHHcCCeEEEEEcCCCc
Confidence 23345689999999965543
No 72
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.53 E-value=0.0029 Score=77.62 Aligned_cols=87 Identities=23% Similarity=0.240 Sum_probs=63.0
Q ss_pred HHHHHhhccchhhhh-----CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH--------Hhhh-cCcccccC---
Q 008268 111 GAIAELLDNAVDEVQ-----NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA--- 173 (572)
Q Consensus 111 ~AIaELIDNAiDA~~-----~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~--------~~~~-~G~S~K~~--- 173 (572)
-.+.|+||||+|... ..++.|.|.+.. +...|+|.|||.||+-+.-. -+|. +-.+.+.+
T Consensus 60 ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~----d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~ 135 (1388)
T PTZ00108 60 KIFDEILVNAADNKARDKGGHRMTYIKVTIDE----ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTE 135 (1388)
T ss_pred hhHHHHhhhhhhhhcccCCCCCccEEEEEEec----cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCc
Confidence 578999999999765 237888888864 23579999999999864321 1233 22344544
Q ss_pred -CCCcccccccccccccccCCEEEEEeeeC
Q 008268 174 -NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (572)
Q Consensus 174 -~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~ 202 (572)
.-.-|+.|+|.|. +-.|...+.|.+...
T Consensus 136 yKvSGGlhGVGasv-vNalS~~f~Vev~r~ 164 (1388)
T PTZ00108 136 KRVTGGRNGFGAKL-TNIFSTKFTVECVDS 164 (1388)
T ss_pred eeeecccccCCccc-cccccceEEEEEEEC
Confidence 3467999999874 455899999999986
No 73
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.34 E-value=0.0046 Score=75.04 Aligned_cols=87 Identities=23% Similarity=0.254 Sum_probs=61.5
Q ss_pred HHHHHHhhccchhhhh-C-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH--------Hhhh-cCcccccC----C
Q 008268 110 FGAIAELLDNAVDEVQ-N-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA----N 174 (572)
Q Consensus 110 f~AIaELIDNAiDA~~-~-~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~--------~~~~-~G~S~K~~----~ 174 (572)
.-.+-|+||||+|... + .++.|.|.+.. ....|+|.|||.||+-+--. -+|+ +-.+.|.+ .
T Consensus 54 ~ki~dEIldNAvDe~~~~g~~~~I~V~i~~----~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~yk 129 (1135)
T PLN03128 54 YKIFDEILVNAADNKQRDPSMDSLKVDIDV----EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKK 129 (1135)
T ss_pred HHHHHHHHHHHHHHhhhcCCCcEEEEEEEc----CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccce
Confidence 4578999999999762 2 36888888864 23589999999999864221 1233 22334443 3
Q ss_pred CCcccccccccccccccCCEEEEEeee
Q 008268 175 KTIGQYGNGFKTSTMRLGADVIVFSRA 201 (572)
Q Consensus 175 ~~iG~fGiG~KsAs~~lg~~v~V~Sr~ 201 (572)
-.-|+.|+|.|. +-.|...+.|.+..
T Consensus 130 vSGGlhGvGasv-vNaLS~~f~Vev~d 155 (1135)
T PLN03128 130 TTGGRNGYGAKL-ANIFSTEFTVETAD 155 (1135)
T ss_pred eeccccCCCCeE-EEeecCeEEEEEEE
Confidence 467999999864 55689999999984
No 74
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=96.33 E-value=0.01 Score=54.04 Aligned_cols=84 Identities=24% Similarity=0.298 Sum_probs=52.8
Q ss_pred HHHHHhhccchhhh-h-CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccccc
Q 008268 111 GAIAELLDNAVDEV-Q-NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (572)
Q Consensus 111 ~AIaELIDNAiDA~-~-~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsAs 188 (572)
.++.||+.||+.+. . .....|.|.+.. .++...|.|.|+|.||+. +.+.+...++.+.. .+..|+|+.. .
T Consensus 42 ~~l~eli~Nai~h~~~~~~~~~I~v~~~~--~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~~---~~~~GlGL~l-v 113 (137)
T TIGR01925 42 TAVSEAVTNAIIHGYEENCEGVVYISATI--EDHEVYITVRDEGIGIEN--LEEAREPLYTSKPE---LERSGMGFTV-M 113 (137)
T ss_pred HHHHHHHHHHHHhccCCCCCcEEEEEEEE--eCCEEEEEEEEcCCCcCc--hhHhhCCCcccCCC---CCCCcccHHH-H
Confidence 58999999999751 1 113457777765 234567999999999973 44555544333322 2235666643 3
Q ss_pred cccCCEEEEEeeeC
Q 008268 189 MRLGADVIVFSRAT 202 (572)
Q Consensus 189 ~~lg~~v~V~Sr~~ 202 (572)
-.+.+++.+.+...
T Consensus 114 ~~~~~~l~~~~~~~ 127 (137)
T TIGR01925 114 ENFMDDVSVDSEKE 127 (137)
T ss_pred HHhCCcEEEEECCC
Confidence 34667888877653
No 75
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.20 E-value=0.0032 Score=72.03 Aligned_cols=83 Identities=22% Similarity=0.196 Sum_probs=57.7
Q ss_pred HHHHhhccchhhhhC---C-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHH-----------hhh-cCcccccC--
Q 008268 112 AIAELLDNAVDEVQN---G-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRK-----------CMS-LGYSTKKA-- 173 (572)
Q Consensus 112 AIaELIDNAiDA~~~---~-A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~-----------~~~-~G~S~K~~-- 173 (572)
.+.|+||||+|...+ + ++.|.|.+. ...|+|.|||.||+-+.-.. +|. +-.+.|.+
T Consensus 49 i~~EIldNavDe~~~~~~g~~~~I~V~i~------dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ 122 (602)
T PHA02569 49 IIDEIIDNSVDEAIRTNFKFANKIDVTIK------NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDT 122 (602)
T ss_pred eeehhhhhhhhhhhccCCCCCcEEEEEEc------CCEEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCc
Confidence 578999999998754 3 788888874 24799999999998643211 122 21223332
Q ss_pred -CCCcccccccccccccccCCEEEEEeee
Q 008268 174 -NKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (572)
Q Consensus 174 -~~~iG~fGiG~KsAs~~lg~~v~V~Sr~ 201 (572)
.-.-|+.|+|.+ +.-.|...+.|.++.
T Consensus 123 ykvSGGlhGVG~s-vvNaLS~~~~V~v~~ 150 (602)
T PHA02569 123 NRVTGGMNGVGSS-LTNFFSVLFIGETCD 150 (602)
T ss_pred ceeeCCcCCccce-eeeccchhhheEEEc
Confidence 345799999986 456688899998755
No 76
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=96.17 E-value=0.0072 Score=67.92 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=55.7
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccccc
Q 008268 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsA 187 (572)
+.+.++.|+|.||+.+. .++.|.|.+.. .++...|.|.|||.||+++.. ...++|.+. ++..
T Consensus 469 ~l~~il~ell~NA~kha--~a~~i~V~~~~--~~~~~~l~V~D~G~Gi~~~~~------------~~~glGL~i--~~~~ 530 (569)
T PRK10600 469 HLLQIAREALSNALKHA--QASEVVVTVAQ--NQNQVKLSVQDNGCGVPENAE------------RSNHYGLII--MRDR 530 (569)
T ss_pred HHHHHHHHHHHHHHHhC--CCCeEEEEEEE--cCCEEEEEEEECCCCCCcccc------------CCCCccHHH--HHHH
Confidence 45678999999999873 46678887765 235568999999999997531 113344443 3445
Q ss_pred ccccCCEEEEEeeeCC
Q 008268 188 TMRLGADVIVFSRATH 203 (572)
Q Consensus 188 s~~lg~~v~V~Sr~~~ 203 (572)
.-++|+++.|.|...+
T Consensus 531 ~~~lgG~l~i~s~~~~ 546 (569)
T PRK10600 531 AQSLRGDCRVRRRESG 546 (569)
T ss_pred HHHcCCEEEEEECCCC
Confidence 5679999999998754
No 77
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.69 E-value=0.015 Score=61.86 Aligned_cols=77 Identities=29% Similarity=0.382 Sum_probs=58.2
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccc
Q 008268 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (572)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~Ks 186 (572)
...|-++.|.|-|++-. ++|+++.|.+..+ ++...|.|.|||.|.+.+... .++|..| |+.
T Consensus 278 ~~l~rivQEaltN~~rH--a~A~~v~V~l~~~--~~~l~l~V~DnG~Gf~~~~~~-------------~~~GL~~--mre 338 (365)
T COG4585 278 DALFRIVQEALTNAIRH--AQATEVRVTLERT--DDELRLEVIDNGVGFDPDKEG-------------GGFGLLG--MRE 338 (365)
T ss_pred HHHHHHHHHHHHHHHhc--cCCceEEEEEEEc--CCEEEEEEEECCcCCCccccC-------------CCcchhh--HHH
Confidence 45678999999999987 4799999999873 356899999999997754321 2233333 565
Q ss_pred cccccCCEEEEEeeeC
Q 008268 187 STMRLGADVIVFSRAT 202 (572)
Q Consensus 187 As~~lg~~v~V~Sr~~ 202 (572)
=...+|++++|.|...
T Consensus 339 Rv~~lgG~l~i~S~~g 354 (365)
T COG4585 339 RVEALGGTLTIDSAPG 354 (365)
T ss_pred HHHHcCCEEEEEecCC
Confidence 5667999999999983
No 78
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=95.59 E-value=0.016 Score=64.60 Aligned_cols=72 Identities=28% Similarity=0.409 Sum_probs=50.3
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccccc
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsAs 188 (572)
...++.|+++||+.+. .+..|.|++.. .++...|.|.|||.||++++. ..++|..+ .|...
T Consensus 411 L~ril~nlL~NAiKha--~~~~I~I~l~~--~~~~i~l~V~DnG~Gi~~~~~-------------~~GLGL~i--vr~iv 471 (495)
T PRK11644 411 LFRVCQEGLNNIVKHA--DASAVTLQGWQ--QDERLMLVIEDDGSGLPPGSG-------------QQGFGLRG--MRERV 471 (495)
T ss_pred HHHHHHHHHHHHHHhC--CCCEEEEEEEE--cCCEEEEEEEECCCCCCcCCC-------------CCCCcHHH--HHHHH
Confidence 3457899999999973 45677887765 334567999999999986521 12333333 24445
Q ss_pred cccCCEEEEEe
Q 008268 189 MRLGADVIVFS 199 (572)
Q Consensus 189 ~~lg~~v~V~S 199 (572)
-.+|+++.+.|
T Consensus 472 ~~~GG~i~v~S 482 (495)
T PRK11644 472 TALGGTLTISC 482 (495)
T ss_pred HHcCCEEEEEc
Confidence 67999999988
No 79
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=95.58 E-value=0.027 Score=60.43 Aligned_cols=89 Identities=24% Similarity=0.313 Sum_probs=64.1
Q ss_pred HHHHHhhccchhhhhC-------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-------CCC
Q 008268 111 GAIAELLDNAVDEVQN-------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKT 176 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~-------~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-------~~~ 176 (572)
.++-||..||+.|... +-.-|.|.+..+ +....|.|.|-|+|++.+++.+.|++++|+-.. ...
T Consensus 263 ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~g--deDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~p 340 (414)
T KOG0787|consen 263 YMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKG--DEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAP 340 (414)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecC--CcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCc
Confidence 5899999999999742 123477777653 356789999999999999999999999986543 122
Q ss_pred cccccccccc---cccccCCEEEEEeee
Q 008268 177 IGQYGNGFKT---STMRLGADVIVFSRA 201 (572)
Q Consensus 177 iG~fGiG~Ks---As~~lg~~v~V~Sr~ 201 (572)
+-=||.|+-. -.-.+++++.+.|-.
T Consensus 341 laGfG~GLPisrlYa~yf~Gdl~L~Sle 368 (414)
T KOG0787|consen 341 LAGFGFGLPISRLYARYFGGDLKLQSLE 368 (414)
T ss_pred ccccccCCcHHHHHHHHhCCCeeEEeee
Confidence 3334555532 234467888888876
No 80
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.33 E-value=0.022 Score=54.12 Aligned_cols=85 Identities=21% Similarity=0.201 Sum_probs=52.6
Q ss_pred HHHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccccc
Q 008268 111 GAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~--A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsAs 188 (572)
-|+.|++-||+.....+ ...|.|.+.. .++...|.|.|+|.||+++.+...+...+..+.. .....-|+|+..+
T Consensus 45 lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~--~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~-~~~~~~G~GL~li- 120 (161)
T PRK04069 45 IAVSEACTNAVQHAYKEDEVGEIHIRFEI--YEDRLEIVVADNGVSFDYETLKSKLGPYDISKPI-EDLREGGLGLFLI- 120 (161)
T ss_pred HHHHHHHHHHHHhccCCCCCCeEEEEEEE--ECCEEEEEEEECCcCCChHHhccccCCCCCCCcc-cccCCCceeHHHH-
Confidence 38999999999873221 1346666655 3467889999999999998887766533221111 0011125565432
Q ss_pred cccCCEEEEEe
Q 008268 189 MRLGADVIVFS 199 (572)
Q Consensus 189 ~~lg~~v~V~S 199 (572)
-.+.+++.+.+
T Consensus 121 ~~l~d~v~~~~ 131 (161)
T PRK04069 121 ETLMDDVTVYK 131 (161)
T ss_pred HHHHHhEEEEc
Confidence 23666777664
No 81
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=95.23 E-value=0.029 Score=62.67 Aligned_cols=77 Identities=25% Similarity=0.369 Sum_probs=59.9
Q ss_pred HHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccc-cccc
Q 008268 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF-KTST 188 (572)
Q Consensus 110 f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~-KsAs 188 (572)
...+.|-+-|++.. +.|++|+|.+..+. +...+.|+|||+|++.. ....|.||+-+ .-=+
T Consensus 483 LqIvREAlsNa~KH--a~As~i~V~~~~~~--g~~~~~VeDnG~Gi~~~---------------~e~~gHyGL~IM~ERA 543 (574)
T COG3850 483 LQIVREALSNAIKH--AQASEIKVTVSQND--GQVTLTVEDNGVGIDEA---------------AEPSGHYGLNIMRERA 543 (574)
T ss_pred HHHHHHHHHHHHHh--cccCeEEEEEEecC--CeEEEEEeeCCcCCCCc---------------cCCCCCcchHHHHHHH
Confidence 46899999999987 37899999998753 78899999999999864 24457888643 1124
Q ss_pred cccCCEEEEEeeeCCCC
Q 008268 189 MRLGADVIVFSRATHES 205 (572)
Q Consensus 189 ~~lg~~v~V~Sr~~~~~ 205 (572)
-+|++.+.|..+..++.
T Consensus 544 ~~L~~~L~i~~~~~gGT 560 (574)
T COG3850 544 QRLGGQLRIRRREGGGT 560 (574)
T ss_pred HHhcCeEEEeecCCCCe
Confidence 57999999999987654
No 82
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.10 E-value=0.047 Score=63.79 Aligned_cols=91 Identities=29% Similarity=0.460 Sum_probs=63.7
Q ss_pred HHHhhccchhhhh--------CC---CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH-Hhh----------------
Q 008268 113 IAELLDNAVDEVQ--------NG---ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR-KCM---------------- 164 (572)
Q Consensus 113 IaELIDNAiDA~~--------~~---A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~-~~~---------------- 164 (572)
+--||-||+|.=. +| .-.|.+.-.. .++.-.|.|.|||.||+++.+. +++
T Consensus 437 L~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~--~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~ 514 (716)
T COG0643 437 LTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYH--EGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDE 514 (716)
T ss_pred HHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEc--CCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHH
Confidence 5678999999620 11 2335555543 5677889999999999887664 233
Q ss_pred -------hcCcccccCCCCcccccccc---cccccccCCEEEEEeeeCCCC
Q 008268 165 -------SLGYSTKKANKTIGQYGNGF---KTSTMRLGADVIVFSRATHES 205 (572)
Q Consensus 165 -------~~G~S~K~~~~~iG~fGiG~---KsAs~~lg~~v~V~Sr~~~~~ 205 (572)
..|+|++..-+.+.=-|+|| |+..-+||+.+.|.|+...+.
T Consensus 515 Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT 565 (716)
T COG0643 515 EILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGT 565 (716)
T ss_pred HHHHHHhcCCCCcchhhhcccCCccCHHHHHHHHHHcCCEEEEEecCCCCe
Confidence 34666666544444448997 788999999999999986543
No 83
>PRK03660 anti-sigma F factor; Provisional
Probab=95.01 E-value=0.064 Score=49.21 Aligned_cols=84 Identities=21% Similarity=0.299 Sum_probs=51.9
Q ss_pred HHHHHhhccchhhhhCC-C-ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccccc
Q 008268 111 GAIAELLDNAVDEVQNG-A-TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~-A-~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsAs 188 (572)
.++.|++.||+..-... . ..|.|.+.. .++...|+|.|+|.||++ +...+...++.+.. .+.-|+|+..+
T Consensus 42 ~~l~eli~Nai~h~~~~~~~~~i~i~~~~--~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~---~~~~GlGL~i~- 113 (146)
T PRK03660 42 TAVSEAVTNAIIHGYENNPDGVVYIEVEI--EEEELEITVRDEGKGIED--IEEAMQPLYTTKPE---LERSGMGFTVM- 113 (146)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEEEE--CCCEEEEEEEEccCCCCh--HHHhhCCCcccCCC---CCCccccHHHH-
Confidence 48999999999652111 1 356676654 334567999999999986 44455543332221 12347777543
Q ss_pred cccCCEEEEEeeeC
Q 008268 189 MRLGADVIVFSRAT 202 (572)
Q Consensus 189 ~~lg~~v~V~Sr~~ 202 (572)
.++++.+.+.+...
T Consensus 114 ~~~~~~i~~~~~~~ 127 (146)
T PRK03660 114 ESFMDEVEVESEPG 127 (146)
T ss_pred HHhCCeEEEEecCC
Confidence 35778888776653
No 84
>PRK13560 hypothetical protein; Provisional
Probab=94.81 E-value=0.027 Score=64.63 Aligned_cols=76 Identities=26% Similarity=0.243 Sum_probs=49.6
Q ss_pred HHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccccccc
Q 008268 112 AIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTM 189 (572)
Q Consensus 112 AIaELIDNAiDA~~~~--A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsAs~ 189 (572)
+|.+||.||+++...+ ...|.|.+... .++...|+|.|||.||+++... .+ ..++|.+- .|...-
T Consensus 715 il~NLl~NAik~~~~~~~~~~i~i~~~~~-~~~~v~i~V~D~G~GI~~~~~~--------~~--~~gLGLai--~~~iv~ 781 (807)
T PRK13560 715 IISELLSNALKHAFPDGAAGNIKVEIREQ-GDGMVNLCVADDGIGLPAGFDF--------RA--AETLGLQL--VCALVK 781 (807)
T ss_pred HHHHHHHHHHHhhccCCCCceEEEEEEEc-CCCEEEEEEEeCCCcCCccccc--------cc--cCCccHHH--HHHHHH
Confidence 6789999999974221 34577766542 1345679999999999986311 01 12233333 245566
Q ss_pred ccCCEEEEEee
Q 008268 190 RLGADVIVFSR 200 (572)
Q Consensus 190 ~lg~~v~V~Sr 200 (572)
.+|+.+.|.|.
T Consensus 782 ~~gG~I~v~S~ 792 (807)
T PRK13560 782 QLDGEIALDSR 792 (807)
T ss_pred HcCCEEEEEcC
Confidence 79999999985
No 85
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=94.20 E-value=0.074 Score=47.47 Aligned_cols=78 Identities=26% Similarity=0.248 Sum_probs=51.2
Q ss_pred HHHHHhhccchhhhhCCC--ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccccc
Q 008268 111 GAIAELLDNAVDEVQNGA--TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~A--~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsAs 188 (572)
-|+.|++-||+.....+. ..|.|.+.. ..+...|.|.|+|.|+++.........+. .....-|.|+.. .
T Consensus 34 lav~E~~~Nav~H~~~~~~~~~v~v~~~~--~~~~l~i~v~D~G~~~d~~~~~~~~~~~~------~~~~~~G~Gl~l-i 104 (125)
T PF13581_consen 34 LAVSEALTNAVEHGYPGDPDGPVDVRLEV--DPDRLRISVRDNGPGFDPEQLPQPDPWEP------DSLREGGRGLFL-I 104 (125)
T ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEEEE--cCCEEEEEEEECCCCCChhhccCcccccC------CCCCCCCcCHHH-H
Confidence 489999999999843222 356666655 33568899999999999887665432221 122233555532 3
Q ss_pred cccCCEEEE
Q 008268 189 MRLGADVIV 197 (572)
Q Consensus 189 ~~lg~~v~V 197 (572)
-+++.++.+
T Consensus 105 ~~l~D~~~~ 113 (125)
T PF13581_consen 105 RSLMDEVDY 113 (125)
T ss_pred HHHHcEEEE
Confidence 458889988
No 86
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=94.07 E-value=0.072 Score=60.47 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=56.0
Q ss_pred HHHHHHhhccchhhhhCC-CceE---EEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccc-
Q 008268 110 FGAIAELLDNAVDEVQNG-ATFV---KVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF- 184 (572)
Q Consensus 110 f~AIaELIDNAiDA~~~~-A~~V---~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~- 184 (572)
-.|+.+|+.||.+|+... +.+. .|.+..+..++...+.|.|||.|.+.+...+++..--+++.+.. |+|+
T Consensus 602 ~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~KGT-----GLGLA 676 (712)
T COG5000 602 GQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREKGT-----GLGLA 676 (712)
T ss_pred HHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceecccccc-----cccHH
Confidence 368999999999998421 1111 24444444667788999999999999999999985544444322 3333
Q ss_pred --cccccccCCEEEEEeee
Q 008268 185 --KTSTMRLGADVIVFSRA 201 (572)
Q Consensus 185 --KsAs~~lg~~v~V~Sr~ 201 (572)
|...--.|+.+.+.-..
T Consensus 677 iVKkIvEeHGG~leL~da~ 695 (712)
T COG5000 677 IVKKIVEEHGGRLELHNAP 695 (712)
T ss_pred HHHHHHHhcCCeEEecCCC
Confidence 33444455555555443
No 87
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=94.04 E-value=0.085 Score=50.17 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=54.0
Q ss_pred HHHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccccc
Q 008268 111 GAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~--A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsAs 188 (572)
-|+.|++-||+.....+ ...|.|.+.. .++...|.|.|+|.|++++.+...+........ ......-|.|+..+
T Consensus 45 lav~Ea~~Nai~ha~~~~~~~~I~I~~~~--~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~-~~~~~~~G~GL~Li- 120 (159)
T TIGR01924 45 IAVSEACTNAVKHAYKEGENGEIGISFHI--YEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEP-IDDLREGGLGLFLI- 120 (159)
T ss_pred HHHHHHHHHHHHhccCCCCCCeEEEEEEE--eCCEEEEEEEEcccccCchhhccccCCCCCCCC-cccCCCCccCHHHH-
Confidence 38999999999973211 2467777765 335678999999999998887765542111111 11112236666433
Q ss_pred cccCCEEEEEe
Q 008268 189 MRLGADVIVFS 199 (572)
Q Consensus 189 ~~lg~~v~V~S 199 (572)
-.+.+++.+.+
T Consensus 121 ~~L~D~v~~~~ 131 (159)
T TIGR01924 121 ETLMDEVEVYE 131 (159)
T ss_pred HHhccEEEEEe
Confidence 45788888875
No 88
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.24 E-value=0.15 Score=54.65 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=61.3
Q ss_pred HHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cCcccccCCCCccccccccc---c
Q 008268 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKANKTIGQYGNGFK---T 186 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~~~~iG~fGiG~K---s 186 (572)
.+|-++|.||+..- -+...|.|.+.. .+....|+|.|.|.||+.+++.++|. |-+-.|...+..|=-|+|+. .
T Consensus 345 QVldNii~NA~KYs-P~Gg~Itv~~~~--~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIake 421 (459)
T COG5002 345 QVLDNIISNALKYS-PDGGRITVSVKQ--RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKE 421 (459)
T ss_pred HHHHHHHHHHhhcC-CCCCeEEEEEee--eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHH
Confidence 67788888888761 124556666654 34567899999999999999999997 54444544456666677763 3
Q ss_pred cccccCCEEEEEeee
Q 008268 187 STMRLGADVIVFSRA 201 (572)
Q Consensus 187 As~~lg~~v~V~Sr~ 201 (572)
..-..|+.+=..|..
T Consensus 422 iV~~hgG~iWA~s~~ 436 (459)
T COG5002 422 IVQAHGGRIWAESEE 436 (459)
T ss_pred HHHHhCCeEEEeccc
Confidence 355567777666663
No 89
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=93.22 E-value=0.16 Score=56.03 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=50.0
Q ss_pred HHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCccccc
Q 008268 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK 172 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~ 172 (572)
.++.+|+-||+||+...+..|.|....+ ..+..+|-|.|||.|-+.+-+.+.+..-+++|.
T Consensus 567 QVlvNl~~NaldA~~h~~p~i~~~~~~~-~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~ 627 (673)
T COG4192 567 QVLVNLIVNALDASTHFAPWIKLIALGT-EQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKE 627 (673)
T ss_pred HHHHHHHHHHHhhhccCCceEEEEeecC-cccceEEEEecCCCCCchhHHHHhcCCcccccc
Confidence 4788999999999877777777776542 345778999999999999999999996666664
No 90
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=93.10 E-value=0.12 Score=54.57 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=55.7
Q ss_pred HHHHHhhccchhhhhCCC---ceEEEE--------EEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccc
Q 008268 111 GAIAELLDNAVDEVQNGA---TFVKVD--------RVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQ 179 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~A---~~V~I~--------i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~ 179 (572)
.|+.+||.||..|....+ .+|.+. +......-...|.|.|||.|++++-....|..--|.|...+
T Consensus 244 Qv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~~Gs---- 319 (363)
T COG3852 244 QVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGREGGT---- 319 (363)
T ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCCCCc----
Confidence 699999999999974211 222222 11100011345889999999999999999986666665533
Q ss_pred cccccccc---ccccCCEEEEEeeeC
Q 008268 180 YGNGFKTS---TMRLGADVIVFSRAT 202 (572)
Q Consensus 180 fGiG~KsA---s~~lg~~v~V~Sr~~ 202 (572)
|+|+..+ .-..++.+++.|+..
T Consensus 320 -GLGLala~~li~qH~G~Ie~~S~Pg 344 (363)
T COG3852 320 -GLGLALAQNLIDQHGGKIEFDSWPG 344 (363)
T ss_pred -cccHHHHHHHHHhcCCEEEEeccCC
Confidence 4454322 334678888888873
No 91
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=92.78 E-value=0.23 Score=55.09 Aligned_cols=75 Identities=21% Similarity=0.242 Sum_probs=50.9
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccc---c
Q 008268 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF---K 185 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~---K 185 (572)
...++.||+.||+.+. .+..|.|.+... .++...|.|.|||+||++++. ... |+|+ +
T Consensus 472 l~qv~~nll~NA~k~~--~~~~i~i~~~~~-~~~~~~i~V~D~G~Gi~~~~~------------~~~-----glGL~i~~ 531 (565)
T PRK10935 472 LLQIIREATLNAIKHA--NASEIAVSCVTN-PDGEHTVSIRDDGIGIGELKE------------PEG-----HYGLNIMQ 531 (565)
T ss_pred HHHHHHHHHHHHHhcC--CCCeEEEEEEEc-CCCEEEEEEEECCcCcCCCCC------------CCC-----CcCHHHHH
Confidence 3457899999999863 345677776542 134567999999999986321 011 3444 4
Q ss_pred ccccccCCEEEEEeeeCC
Q 008268 186 TSTMRLGADVIVFSRATH 203 (572)
Q Consensus 186 sAs~~lg~~v~V~Sr~~~ 203 (572)
...-.+|+.+.|.|...+
T Consensus 532 ~iv~~~~G~i~v~s~~~~ 549 (565)
T PRK10935 532 ERAERLGGTLTISQPPGG 549 (565)
T ss_pred HHHHHcCCEEEEEECCCC
Confidence 445678999999988754
No 92
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=92.64 E-value=0.11 Score=57.41 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=51.8
Q ss_pred HHHHHhhccchhhhh-CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccccccc
Q 008268 111 GAIAELLDNAVDEVQ-NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTM 189 (572)
Q Consensus 111 ~AIaELIDNAiDA~~-~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsAs~ 189 (572)
-.|-=|||||+.+-. .......|.+.....++...++|.|||.||+++......+-+..+ .|+|+...-.
T Consensus 353 l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~~~~~~r---------~giGL~Nv~~ 423 (456)
T COG2972 353 LVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGLSTKGENR---------SGIGLSNVKE 423 (456)
T ss_pred HHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHHHhhccCc---------ccccHHHHHH
Confidence 478999999999842 112223344333223567789999999999999888766543322 4667653322
Q ss_pred ----ccCC-EEEEEeeeCC
Q 008268 190 ----RLGA-DVIVFSRATH 203 (572)
Q Consensus 190 ----~lg~-~v~V~Sr~~~ 203 (572)
.-|. .+.+.|+..+
T Consensus 424 rl~~~~g~~~~~i~s~~~~ 442 (456)
T COG2972 424 RLKLYFGEPGLSIDSQPGK 442 (456)
T ss_pred HHHHeeCCcceeEeecCCC
Confidence 2333 3556666543
No 93
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=92.14 E-value=0.25 Score=56.47 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=60.5
Q ss_pred HHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhc---CcccccCCCCcccccccc---
Q 008268 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSL---GYSTKKANKTIGQYGNGF--- 184 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~---G~S~K~~~~~iG~fGiG~--- 184 (572)
....+||.||+-.-....+.|.|.... .+...++.|.|||.|+++.-++++|.+ .+|.. .-.| -|+|+
T Consensus 639 qv~~NLi~Naik~~~~e~~~i~I~~~r--~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~---~y~g-tG~GL~I~ 712 (750)
T COG4251 639 QVFQNLIANAIKFGGPENPDIEISAER--QEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSRD---EYLG-TGLGLAIC 712 (750)
T ss_pred HHHHHHHhhheecCCCCCCceEEeeec--cCCceEEEecCCCCCcCHHHHHHHHHHHHhcCchh---hhcC-CCccHHHH
Confidence 467899999998743335667776544 446789999999999999999998762 22211 1122 56664
Q ss_pred cccccccCCEEEEEeeeCC
Q 008268 185 KTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 185 KsAs~~lg~~v~V~Sr~~~ 203 (572)
|...-+.++++.|.|+...
T Consensus 713 kkI~e~H~G~i~vEs~~gE 731 (750)
T COG4251 713 KKIAERHQGRIWVESTPGE 731 (750)
T ss_pred HHHHHHhCceEEEeecCCC
Confidence 3446678899999999643
No 94
>PRK13559 hypothetical protein; Provisional
Probab=91.60 E-value=0.25 Score=51.65 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=49.2
Q ss_pred HHHHHHhhccchhhhh--CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccccc
Q 008268 110 FGAIAELLDNAVDEVQ--NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (572)
Q Consensus 110 f~AIaELIDNAiDA~~--~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsA 187 (572)
..++.||+.||+.+-. .....|.|.+.....++...|.|.|||+||+++. ...++|.+. ++..
T Consensus 269 ~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~~-------------~~~g~Gl~i--~~~~ 333 (361)
T PRK13559 269 GLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPKL-------------AKRGFGTVI--IGAM 333 (361)
T ss_pred HHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCCC-------------CCCCcHHHH--HHHH
Confidence 3588999999998721 1234677776333344567899999999976531 123333333 2333
Q ss_pred ccc-cCCEEEEEeee
Q 008268 188 TMR-LGADVIVFSRA 201 (572)
Q Consensus 188 s~~-lg~~v~V~Sr~ 201 (572)
.-. +|+.+.+.+..
T Consensus 334 v~~~~gG~i~~~~~~ 348 (361)
T PRK13559 334 VESQLNGQLEKTWSD 348 (361)
T ss_pred HHHHcCCeEEEEEcC
Confidence 444 99999998864
No 95
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=91.36 E-value=0.4 Score=45.34 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=52.9
Q ss_pred HHHHHhhccchhhhhCCC---ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC--CCCccccccccc
Q 008268 111 GAIAELLDNAVDEVQNGA---TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA--NKTIGQYGNGFK 185 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~A---~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~--~~~iG~fGiG~K 185 (572)
.|+.|++.|++.+.-... ..|.|.+.. .++...++|.|.|.| .+++...+..++..... ..+.|.|+
T Consensus 43 ~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~--~~~~~~i~i~D~G~~--~~~~~~~~~~~~~~~~~~~~~G~Gl~l---- 114 (146)
T COG2172 43 IAVSEALTNAVKHAYKLDPSEGEIRIEVSL--DDGKLEIRIWDQGPG--IEDLEESLGPGDTTAEGLQEGGLGLFL---- 114 (146)
T ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEEEEE--cCCeEEEEEEeCCCC--CCCHHHhcCCCCCCCcccccccccHHH----
Confidence 499999999999842211 456666665 346789999999955 45666667666433332 33444444
Q ss_pred ccccccCCEEEEEeeeC
Q 008268 186 TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 186 sAs~~lg~~v~V~Sr~~ 202 (572)
..++.+++.+.....
T Consensus 115 --~~~~~D~~~~~~~~~ 129 (146)
T COG2172 115 --AKRLMDEFSYERSED 129 (146)
T ss_pred --HhhhheeEEEEeccC
Confidence 244778888875543
No 96
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=88.41 E-value=0.58 Score=47.13 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHhhccchhhhhC--CCceEEEEEEEccCCCCCeEEEEECCCCCCH
Q 008268 112 AIAELLDNAVDEVQN--GATFVKVDRVNIMKDNSPALVFIDDGGGMDP 157 (572)
Q Consensus 112 AIaELIDNAiDA~~~--~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~ 157 (572)
++-||+-||+..... ....|.|.+.....++...++|.|||.|++.
T Consensus 126 iv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~ 173 (221)
T COG3920 126 IVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPV 173 (221)
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCC
Confidence 689999999997422 2456777777633211368999999999874
No 97
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=88.08 E-value=1.1 Score=48.56 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=59.1
Q ss_pred cccccccccccccccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC
Q 008268 94 VHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA 173 (572)
Q Consensus 94 v~~~fLhSnatsh~~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~ 173 (572)
.+++=.+-+.|..--.+...-|++.|-... +.|+.|.|.+.. .+....++|+|||.|++.. . .
T Consensus 396 ~~~n~~~ldet~rvTLyRl~QE~LNNI~KH--A~AS~V~i~l~~--~~e~l~Lei~DdG~Gl~~~---------~----~ 458 (497)
T COG3851 396 WRINETALDETQRVTLYRLCQELLNNICKH--ADASAVTIQLWQ--QDERLMLEIEDDGSGLPPG---------S----G 458 (497)
T ss_pred cccCcccCCcceeEeHHHHHHHHHHHHHhc--cccceEEEEEee--CCcEEEEEEecCCcCCCCC---------C----C
Confidence 333334445555555677889999998876 368889888875 2344789999999998732 1 1
Q ss_pred CCCcccccccccccccccCCEEEEEeee
Q 008268 174 NKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (572)
Q Consensus 174 ~~~iG~fGiG~KsAs~~lg~~v~V~Sr~ 201 (572)
..+.|.-|+ .--.-.+|+++++.|.+
T Consensus 459 v~G~Gl~Gm--rERVsaLGG~ltlssq~ 484 (497)
T COG3851 459 VQGFGLTGM--RERVSALGGTLTLSSQH 484 (497)
T ss_pred ccCcCcchH--HHHHHHhCCceEEEecc
Confidence 244444443 22344589999998854
No 98
>PF14501 HATPase_c_5: GHKL domain
Probab=81.59 E-value=3.1 Score=36.05 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=29.8
Q ss_pred HHHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCC
Q 008268 111 GAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGG 154 (572)
Q Consensus 111 ~AIaELIDNAiDA~~~~--A~~V~I~i~~~~~~~~~~I~I~DNG~G 154 (572)
..++.|+|||++|+... .+.|.|.+.. .++...|.|......
T Consensus 8 ~il~nlldNAiea~~~~~~~~~I~i~~~~--~~~~~~i~i~N~~~~ 51 (100)
T PF14501_consen 8 RILGNLLDNAIEACKKYEDKRFISISIRE--ENGFLVIIIENSCEK 51 (100)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEEe--cCCEEEEEEEECCCC
Confidence 47999999999997532 5567777765 345666777666444
No 99
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=79.99 E-value=4.4 Score=43.57 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=52.6
Q ss_pred HHHHHhhccchhhhh--CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccc--
Q 008268 111 GAIAELLDNAVDEVQ--NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT-- 186 (572)
Q Consensus 111 ~AIaELIDNAiDA~~--~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~Ks-- 186 (572)
.|+--.++-|+.-+. ++|+.|.|.+.. .++...+.|.|||.|.+.++...-+ .|+|+..
T Consensus 358 talyRv~QEaltNIErHa~Atrv~ill~~--~~d~vql~vrDnG~GF~~~~~~~~~---------------~GiGLRNMr 420 (459)
T COG4564 358 TALYRVVQEALTNIERHAGATRVTILLQQ--MGDMVQLMVRDNGVGFSVKEALQKR---------------HGIGLRNMR 420 (459)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEecc--CCcceEEEEecCCCCccchhhccCc---------------cccccccHH
Confidence 466666666665443 478988887764 4567889999999998876654221 3666532
Q ss_pred -cccccCCEEEEEeeeCC
Q 008268 187 -STMRLGADVIVFSRATH 203 (572)
Q Consensus 187 -As~~lg~~v~V~Sr~~~ 203 (572)
-...+|+.++|.|...+
T Consensus 421 ERma~~GG~~~v~s~p~G 438 (459)
T COG4564 421 ERMAHFGGELEVESSPQG 438 (459)
T ss_pred HHHHHhCceEEEEecCCC
Confidence 23348999999999874
No 100
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=76.99 E-value=7.1 Score=35.18 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=41.7
Q ss_pred eeeccCC--CcccCceEEEEcCceeccc--ccc----cCCCCccCceEEEEEecC--------ccCCCCCccc--ccc-c
Q 008268 401 GFIKEAP--ALSVSGFNVYHKNRLIRPF--WKV----TGDGSLKGNGVVGVLEAN--------FIEPTHDKQD--FER-S 461 (572)
Q Consensus 401 Gf~k~~~--~~~~~Gf~VY~nnRLI~~~--~kv----~~~~~~~grgviGVlead--------flepthnKQd--Fe~-t 461 (572)
||+..+. ..+..+.++|.|||.|..- .+. .......++.-+.+|..+ -++|+ |+. |.+ .
T Consensus 27 G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P~~vL~i~~p~~~vDVNvhP~--K~eV~f~~e~ 104 (119)
T PF01119_consen 27 GYISKPDVSRSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYPIFVLFIEIPPSEVDVNVHPA--KREVRFRDED 104 (119)
T ss_dssp EEEE-SSCSBSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-EEEEEEE-SGGGEEETSSTT--TT-EEETTHH
T ss_pred EEEECchhccCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCceEEEEEEcchHHcccccccc--ceEEEecCHH
Confidence 7876543 3346799999999999842 111 122334455556666542 25554 555 654 6
Q ss_pred HHHHHHHHHHHHHH
Q 008268 462 TLFVRLESKLKQMT 475 (572)
Q Consensus 462 ~~y~~l~~~L~e~l 475 (572)
.++..+++.+.+.+
T Consensus 105 ~i~~~i~~~i~~~L 118 (119)
T PF01119_consen 105 EILNLIEEAIREAL 118 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 67777777777765
No 101
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=73.10 E-value=3.4 Score=46.24 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=32.0
Q ss_pred HHHHhhccchhhhhC---CCceEEEEEEEccCCCCCeEEEEECCCCCCHH
Q 008268 112 AIAELLDNAVDEVQN---GATFVKVDRVNIMKDNSPALVFIDDGGGMDPE 158 (572)
Q Consensus 112 AIaELIDNAiDA~~~---~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e 158 (572)
.|-=||+||+-.-.. +.-.|.|.+.. .+....|.|+|||.|+.++
T Consensus 460 ilQPLVENAIKHG~~~~~~~g~V~I~V~~--~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 460 ILQPLVENAIKHGISQLKDTGRVTISVEK--EDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhhHHHHHHHHhcccchhcCCceEEEEEE--eCCeEEEEEecCCCCcCCC
Confidence 567799999986311 12336666654 3456899999999999986
No 102
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=65.63 E-value=16 Score=33.56 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=42.7
Q ss_pred eeeccCC-CcccCceEEEEcCceecccc--ccc----CCCCccCceEEEEEecC----c--cCCCCCccc--ccc-cHHH
Q 008268 401 GFIKEAP-ALSVSGFNVYHKNRLIRPFW--KVT----GDGSLKGNGVVGVLEAN----F--IEPTHDKQD--FER-STLF 464 (572)
Q Consensus 401 Gf~k~~~-~~~~~Gf~VY~nnRLI~~~~--kv~----~~~~~~grgviGVlead----f--lepthnKQd--Fe~-t~~y 464 (572)
||+..+. ..+...+++|.|||.|+... +.. ..-...++.-+.+|..+ . +.++=+|+. |.+ ..++
T Consensus 36 G~is~p~~~~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~l~~~~~P~~~L~i~i~p~~vDVNVHP~K~eV~f~~e~~i~ 115 (127)
T cd03483 36 GLISNANYSKKKIIFILFINNRLVECSALRRAIENVYANYLPKGAHPFVYLSLEIPPENVDVNVHPTKREVHFLNEEEII 115 (127)
T ss_pred EEEcCchhcCCCceEEEEEcCCEecCHHHHHHHHHHHHHhCcCCCccEEEEEEEeChHHeeeccCCCccEEEecCHHHHH
Confidence 8875432 24567899999999997311 111 11113455555555432 2 233566777 544 5566
Q ss_pred HHHHHHHHHHH
Q 008268 465 VRLESKLKQMT 475 (572)
Q Consensus 465 ~~l~~~L~e~l 475 (572)
..+...+++.+
T Consensus 116 ~~i~~~v~~~L 126 (127)
T cd03483 116 ERIQKLVEDKL 126 (127)
T ss_pred HHHHHHHHHHh
Confidence 77777776654
No 103
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=65.41 E-value=18 Score=42.90 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=32.9
Q ss_pred HHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHH
Q 008268 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL 160 (572)
Q Consensus 110 f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l 160 (572)
+...-|+++||.| ...++..=.|.+..++ ....|.|.+||.||+-+..
T Consensus 55 ~ki~dEilvNaad-k~rd~~m~~i~v~i~~--e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 55 YKIFDEILVNAAD-KQRDPKMNTIKVTIDK--EKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred HHHHHHHhhcccc-cccCCCcceeEEEEcc--CCCEEEEEeCCCcceeeec
Confidence 3578999999999 5555443233333333 4568999999999986543
No 104
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=62.23 E-value=17 Score=33.09 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=43.2
Q ss_pred eeeccCC--CcccCceEEEEcCceecccc--ccc----CCCCccCceEEEEEecC----c--cCCCCCccc--ccc-cHH
Q 008268 401 GFIKEAP--ALSVSGFNVYHKNRLIRPFW--KVT----GDGSLKGNGVVGVLEAN----F--IEPTHDKQD--FER-STL 463 (572)
Q Consensus 401 Gf~k~~~--~~~~~Gf~VY~nnRLI~~~~--kv~----~~~~~~grgviGVlead----f--lepthnKQd--Fe~-t~~ 463 (572)
||+..+. .......++|.|||.|.... +.. ..-...++.-+.+|..+ . +.++-+|+. |.+ ..+
T Consensus 31 G~is~p~~~r~~~~~q~ifVN~R~V~~~~l~~ai~~~y~~~~~~~~~P~~vL~l~ipp~~vDvNVhP~K~eV~f~~e~~i 110 (123)
T cd03482 31 GWIALPTFARSQADIQYFYVNGRMVRDKLISHAVRQAYSDVLHGGRHPAYVLYLELDPAQVDVNVHPAKHEVRFRDSRLV 110 (123)
T ss_pred EEEeCchhccCCCCcEEEEEcCcEECChHHHHHHHHHHHHhccCCCCcEEEEEEEcChHheeeccCCCccEEEECCHHHH
Confidence 8886554 44577899999999997311 000 11123455556665542 2 223456666 443 556
Q ss_pred HHHHHHHHHHHH
Q 008268 464 FVRLESKLKQMT 475 (572)
Q Consensus 464 y~~l~~~L~e~l 475 (572)
+..+...+++.+
T Consensus 111 ~~~i~~~i~~~L 122 (123)
T cd03482 111 HDFIYHAVKKAL 122 (123)
T ss_pred HHHHHHHHHHHh
Confidence 676777766654
No 105
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=57.38 E-value=23 Score=31.64 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=19.3
Q ss_pred eeeccCC--CcccCceEEEEcCceec
Q 008268 401 GFIKEAP--ALSVSGFNVYHKNRLIR 424 (572)
Q Consensus 401 Gf~k~~~--~~~~~Gf~VY~nnRLI~ 424 (572)
||+..+. .....+.++|.|||+|.
T Consensus 31 G~is~~~~~~~~~~~q~~fVN~R~v~ 56 (122)
T cd00782 31 GYISKPDFGRSSKDRQFLFVNGRPVR 56 (122)
T ss_pred EEEECchhhcCCCccEEEEECCeEec
Confidence 8886554 45677899999999997
No 106
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=49.47 E-value=45 Score=31.07 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.6
Q ss_pred eeeccCCCcccCceEEEEcCceec
Q 008268 401 GFIKEAPALSVSGFNVYHKNRLIR 424 (572)
Q Consensus 401 Gf~k~~~~~~~~Gf~VY~nnRLI~ 424 (572)
||+..++..+....++|.|||.|.
T Consensus 32 G~is~p~~~sk~~q~ifVN~R~v~ 55 (141)
T cd03486 32 GYISSEGHYSKSFQFIYVNGRLYL 55 (141)
T ss_pred EEEcCCCCCCCceEEEEECCEEec
Confidence 888766666788999999999996
No 107
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=49.21 E-value=51 Score=30.81 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=19.4
Q ss_pred eeeccC----CCcccCceEEEEcCceecc
Q 008268 401 GFIKEA----PALSVSGFNVYHKNRLIRP 425 (572)
Q Consensus 401 Gf~k~~----~~~~~~Gf~VY~nnRLI~~ 425 (572)
||+..+ ......+.++|.|||+|..
T Consensus 49 G~is~p~~~~~r~~~~~q~~fVN~R~V~~ 77 (142)
T cd03484 49 GYISKPSHGCGRSSSDRQFFYINGRPVDL 77 (142)
T ss_pred EEECCCcccCCCCCCCcEEEEECCeecCC
Confidence 888654 3456788999999999974
No 108
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=40.37 E-value=50 Score=30.33 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=39.6
Q ss_pred eeeccC----CCcccCceEEEEcCceecc-c--cc-c---cC---CCCccCceEEEEEecC----c--cCCCCCccc--c
Q 008268 401 GFIKEA----PALSVSGFNVYHKNRLIRP-F--WK-V---TG---DGSLKGNGVVGVLEAN----F--IEPTHDKQD--F 458 (572)
Q Consensus 401 Gf~k~~----~~~~~~Gf~VY~nnRLI~~-~--~k-v---~~---~~~~~grgviGVlead----f--lepthnKQd--F 458 (572)
||+..+ ......+.++|.|||.|.. - -+ + .. ..+..++.-+.+|..+ . +.++-+|.+ |
T Consensus 34 G~is~p~~~~~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~~~~~~~~~~~P~~~L~i~~~~~~vDVNVhP~K~eV~f 113 (132)
T cd03485 34 GFLPKPGSDVSKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSSAYRKSSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLL 113 (132)
T ss_pred EEECCCCcCCCcccCCcEEEEECCeecccchHHHHHHHHHHHHHhccccccCCCEEEEEEEcCCCceeeccCCccCEEEE
Confidence 787554 2346789999999999975 1 11 1 11 1124566666666542 2 222455666 5
Q ss_pred cc-cHHHHHHHHHHH
Q 008268 459 ER-STLFVRLESKLK 472 (572)
Q Consensus 459 e~-t~~y~~l~~~L~ 472 (572)
.+ ..+++.++..++
T Consensus 114 ~~e~~v~~~i~~~v~ 128 (132)
T cd03485 114 QNKEAVLQAVENLLE 128 (132)
T ss_pred cChHHHHHHHHHHHH
Confidence 54 445554444443
No 109
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=29.74 E-value=1.4e+02 Score=34.27 Aligned_cols=64 Identities=16% Similarity=0.262 Sum_probs=41.1
Q ss_pred ccCceEEEEcCceeccc-ccccCCCCccCceEEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHH
Q 008268 410 SVSGFNVYHKNRLIRPF-WKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTL 476 (572)
Q Consensus 410 ~~~Gf~VY~nnRLI~~~-~kv~~~~~~~grgviGVleadflepthnKQdFe~t~~y~~l~~~L~e~l~ 476 (572)
...|+-+|+|.=+|.-- ..+... .-+=|-|||+++-|+.+-++--++.+...+.+...|.+++-
T Consensus 156 ~~~~ikLY~rrVfI~d~~~~llP~---~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl 220 (531)
T PF00183_consen 156 KKNGIKLYVRRVFITDNFEELLPE---YLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVL 220 (531)
T ss_dssp T--SEEEEETTEEEESSCGGSS-G---GGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHH
T ss_pred ccccceeeeecccccchhhcccch---hhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHH
Confidence 46799999999999631 112111 12336688999999999988888888877777666554443
No 110
>PRK09697 protein secretion protein GspB; Provisional
Probab=23.13 E-value=47 Score=30.44 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=18.4
Q ss_pred CCCceeEeccCCCCCCCcccc
Q 008268 6 EKPQNVVELTSSDDEDNVAAG 26 (572)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (572)
.+|.+|||--|.|||-||++-
T Consensus 84 KqPLPV~E~V~~edE~gvavE 104 (139)
T PRK09697 84 KQPLPVVESVEEEDEPGVAVE 104 (139)
T ss_pred cCCCCCccccccccccccccc
Confidence 478999999999999999984
Done!