Query 008269
Match_columns 571
No_of_seqs 181 out of 434
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 21:39:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1171 Metallothionein-like p 100.0 7.2E-54 1.6E-58 443.0 12.0 275 49-497 118-394 (406)
2 PF03638 TCR: Tesmin/TSO1-like 99.5 3.6E-15 7.8E-20 113.5 2.9 41 174-214 1-41 (42)
3 PF03638 TCR: Tesmin/TSO1-like 99.4 1.5E-13 3.2E-18 104.7 2.2 40 61-129 2-42 (42)
4 KOG1171 Metallothionein-like p 99.3 1E-12 2.2E-17 138.0 2.2 63 173-235 128-193 (406)
5 KOG1079 Transcriptional repres 95.5 0.006 1.3E-07 68.9 1.7 52 105-206 515-569 (739)
6 KOG3813 Uncharacterized conser 78.7 1.7 3.7E-05 48.9 3.2 43 171-214 302-351 (640)
7 PF05033 Pre-SET: Pre-SET moti 62.0 7.8 0.00017 33.2 2.9 38 174-212 44-103 (103)
8 PF11430 EGL-1: Programmed cel 37.1 4.8 0.0001 27.7 -1.7 13 420-432 7-19 (21)
9 KOG1079 Transcriptional repres 23.8 32 0.0007 40.2 0.7 21 105-125 552-572 (739)
10 PF07172 GRP: Glycine rich pro 20.5 81 0.0017 28.2 2.4 17 331-347 13-29 (95)
No 1
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-54 Score=443.00 Aligned_cols=275 Identities=40% Similarity=0.698 Sum_probs=203.5
Q ss_pred ccCCCCCCCCCCCCccccccCCccccchhhhhhhhhccCCCCCCCcccccccCcccccccccCCCCCCC-CCCCCCCCCc
Q 008269 49 RANTDGKDGTPKKQKQCNCRNSRCLKLDFVEIWINIYSNTSPGAHLNTQFKDNLVKYCECFAAGIYCDG-CNCVNCHNNV 127 (571)
Q Consensus 49 ~~~~~~kd~~~kk~k~CnCkkSkCLKL~~~~~~~~~~~~~~~~~~l~~~~~~~l~~YCeCFAaG~yC~~-CnC~~C~N~~ 127 (571)
+......++++..++.|||++|+|||| ||||||+|.||++ |||++|||++
T Consensus 118 ~s~~~~~~~~~g~k~~~~ck~Skclkl-----------------------------YCeCFAsG~yC~~~CnCvnC~N~~ 168 (406)
T KOG1171|consen 118 KTKKGTSQGAPGSKKKCNCKKSKCLKL-----------------------------YCECFASGVYCTGPCNCVNCFNNP 168 (406)
T ss_pred ccccccccCCCCCccCCCchHHHHHHH-----------------------------hHHHHhhcccccCCcceeeccCCC
Confidence 444555567888999999999999999 9999999999996 9999999999
Q ss_pred ccHHHHHHHHHHHHhhCCCcccccccCCCCCCcchhHHHHHHHHhhhcCCCcccCCcccccchhhhhccCCCCCCCCccc
Q 008269 128 EHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCL 207 (571)
Q Consensus 128 ~~e~~R~~Aik~il~RNP~AF~PKI~~sp~g~~ds~e~a~e~~~~~kH~kGCnCKKS~CLKkYCECF~agv~Cs~~CkC~ 207 (571)
+|+.+|.+||++||+|||+||+|||+.++++..+..+++...+..++|.+|||||||+|||+||||||+|++|+++|+|+
T Consensus 169 ~~e~~r~~a~k~~l~RNP~AFkPKia~s~~~~~da~~~~~~~~~sa~hkkGC~CkkSgClKkYCECyQa~vlCS~nCkC~ 248 (406)
T KOG1171|consen 169 EHESVRLKARKQILERNPNAFKPKIAASSSGIADASEEASKTPASARHKKGCNCKKSGCLKKYCECYQAGVLCSSNCKCQ 248 (406)
T ss_pred cchHHHHHHHHHHhhcCccccccccccCCcccchhhhhhhccchhhhhcCCCCCccccchHHHHHHHhcCCCccccccCc
Confidence 99999999999999999999999999999999999888888889999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHhhhccccCcchhhHHhhhhhhcccccCCCCCCCcccccccchhhhhhcccCCCcccCCCccccccccC
Q 008269 208 DCKNFEGSEERRALFHGDHNGIAFMQRAANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQ 287 (571)
Q Consensus 208 ~CkN~e~seeR~~l~~~~~~~~afiqq~anaa~~GaiGsS~~~s~~~~rKr~~~e~~~~~~~~d~s~~~~~q~qq~n~~~ 287 (571)
+|+|+.+..+ ++.
T Consensus 249 ~CkN~~g~~~----------------------------s~~--------------------------------------- 261 (406)
T KOG1171|consen 249 GCKNNFGYKD----------------------------SKT--------------------------------------- 261 (406)
T ss_pred CCccchhhcc----------------------------ccc---------------------------------------
Confidence 9999221100 000
Q ss_pred CCCCCCCCCccccccCCccccCCCCccccccccccCCcccHHHHHHHHHHHhHHHHHHHhhccccccccccccccCCCCC
Q 008269 288 NSAVPCSQSVPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLTKKVGAMQTEREGSRSSVASP 367 (571)
Q Consensus 288 ~s~~s~s~s~~~~~~~~~~~~g~sk~~YRS~LAd~iqp~dv~~LcslLVvvs~eAakt~a~~~~~~~~~~e~~~~s~as~ 367 (571)
++.++++|+...|-+++.++...++.. ......+++
T Consensus 262 ------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~~~~~~ 297 (406)
T KOG1171|consen 262 ------------------------------------QQPPTKALMSTPVESSGPAAQQNTEAR--------RKSDPPASP 297 (406)
T ss_pred ------------------------------------cCCchhhhccccccccccccccccccc--------cCCCCCCCC
Confidence 334444444444444444443333222 111111111
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhccccccccccccCC-CCCcccccccc
Q 008269 368 IQEGEDSRKGHEVHNGIPDDRQSGNQMDVDGTSGSGSDGGDMLNERPLSPGTRALMCDEEDSAFMQAG-PQTGLASKSTV 446 (571)
Q Consensus 368 ~~~~~~~~k~~~~~~~~~~d~~~~n~~~~~~~~~s~~d~~d~~~~RP~SPgT~ALMCDEqD~~F~~~~-s~~~~~~~~~~ 446 (571)
...... .+........ ++++++|-|++|||||.++++|-.. +.+....+
T Consensus 298 ~~~~~~---------------------~~~~lp~~~~------d~~r~~~~~~~~~v~ea~~~cm~~~~~~~~~~e~--- 347 (406)
T KOG1171|consen 298 LPDNDP---------------------LLLHLPDLSD------DGNRLPPNTLALEVDEAITICMLAQAEEAKPVEQ--- 347 (406)
T ss_pred cccccc---------------------cccCCccccc------CcCCCChHHHhhhhhhHHHHHHhhccccccchhh---
Confidence 111100 0011111111 2389999999999999999998776 33322211
Q ss_pred ccccccchhHHHHHHHHHHHHhHHHHHHHHHhhcccccccccccccccccc
Q 008269 447 QKSNAYASTRIYAEQERLILTRFRDFLNRLITCGSIKETMCSPLVKSETRS 497 (571)
Q Consensus 447 q~~~~q~~sel~aeQEr~VLT~FRD~L~~lIt~G~ike~k~s~~~~~e~~~ 497 (571)
.|.-.++|.+||++||++|+|||..+|.+.+|.+-.+-....+.++.
T Consensus 348 ----~~~~~~~~~~~e~~vl~~f~~cl~~~i~~~~~~~~~~~r~~~~~~~~ 394 (406)
T KOG1171|consen 348 ----SQNEGDKELEQEQLVLEEFGRCLEQIIPNITELSPDGDRASEDDPDV 394 (406)
T ss_pred ----cccccchhHHHHHHHHHHHHHHHhccccccceecccccccccccCCc
Confidence 12222399999999999999999999999999988875555555544
No 2
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=99.53 E-value=3.6e-15 Score=113.46 Aligned_cols=41 Identities=63% Similarity=1.387 Sum_probs=38.8
Q ss_pred hcCCCcccCCcccccchhhhhccCCCCCCCCcccCCCCCCC
Q 008269 174 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEG 214 (571)
Q Consensus 174 kH~kGCnCKKS~CLKkYCECF~agv~Cs~~CkC~~CkN~e~ 214 (571)
++.+||+|+||+|||+|||||++|++|++.|+|.+|+|.++
T Consensus 1 ~~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~~C~N~~~ 41 (42)
T PF03638_consen 1 KKKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQNCKNTEE 41 (42)
T ss_pred CCCCCCcccCcChhhhhCHHHHCcCcCCCCcccCCCCCcCC
Confidence 35789999999999999999999999999999999999876
No 3
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=99.38 E-value=1.5e-13 Score=104.68 Aligned_cols=40 Identities=60% Similarity=1.456 Sum_probs=37.6
Q ss_pred CCccccccCCccccchhhhhhhhhccCCCCCCCcccccccCcccccccccCCCCCC-CCCCCCCCCCccc
Q 008269 61 KQKQCNCRNSRCLKLDFVEIWINIYSNTSPGAHLNTQFKDNLVKYCECFAAGIYCD-GCNCVNCHNNVEH 129 (571)
Q Consensus 61 k~k~CnCkkSkCLKL~~~~~~~~~~~~~~~~~~l~~~~~~~l~~YCeCFAaG~yC~-~CnC~~C~N~~~~ 129 (571)
+.++|+|+||+|||+ |||||++|.+|+ .|+|.+|+|..+|
T Consensus 2 ~~~gC~Ckks~Clk~-----------------------------YC~Cf~~g~~C~~~C~C~~C~N~~~~ 42 (42)
T PF03638_consen 2 KKKGCNCKKSKCLKL-----------------------------YCECFQAGRFCTPNCKCQNCKNTEEN 42 (42)
T ss_pred CCCCCcccCcChhhh-----------------------------hCHHHHCcCcCCCCcccCCCCCcCCC
Confidence 568999999999999 999999999998 7999999999876
No 4
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=99.28 E-value=1e-12 Score=138.01 Aligned_cols=63 Identities=38% Similarity=0.793 Sum_probs=54.7
Q ss_pred hhcCCCcccCCcccccchhhhhccCCCCCCCCcccCCCCCCCcH-HHHhhhc--cccCcchhhHHh
Q 008269 173 AKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSE-ERRALFH--GDHNGIAFMQRA 235 (571)
Q Consensus 173 ~kH~kGCnCKKS~CLKkYCECF~agv~Cs~~CkC~~CkN~e~se-eR~~l~~--~~~~~~afiqq~ 235 (571)
..+.+.|+||+|.|||+|||||++|.||...|+|++|+|+.+.+ .|.+.+. +.+|+.||.+++
T Consensus 128 ~g~k~~~~ck~SkclklYCeCFAsG~yC~~~CnCvnC~N~~~~e~~r~~a~k~~l~RNP~AFkPKi 193 (406)
T KOG1171|consen 128 PGSKKKCNCKKSKCLKLYCECFASGVYCTGPCNCVNCFNNPEHESVRLKARKQILERNPNAFKPKI 193 (406)
T ss_pred CCCccCCCchHHHHHHHhHHHHhhcccccCCcceeeccCCCcchHHHHHHHHHHhhcCcccccccc
Confidence 45789999999999999999999999999999999999997655 5555444 678999999996
No 5
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=95.52 E-value=0.006 Score=68.89 Aligned_cols=52 Identities=35% Similarity=0.976 Sum_probs=45.0
Q ss_pred ccccccCCCCCC-CCCCC-CCCCCcccHHHHHHHHHHHHhhCCCcccccccCCCCCCcchhHHHHHHHHhhhcCCCcccC
Q 008269 105 YCECFAAGIYCD-GCNCV-NCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCK 182 (571)
Q Consensus 105 YCeCFAaG~yC~-~CnC~-~C~N~~~~e~~R~~Aik~il~RNP~AF~PKI~~sp~g~~ds~e~a~e~~~~~kH~kGCnCK 182 (571)
-|.|--.+.+|. -|.|. +|.|. ..||+|
T Consensus 515 ~C~C~~n~~~CEk~C~C~~dC~nr-------------------------------------------------F~GC~C- 544 (739)
T KOG1079|consen 515 GCPCIDNETFCEKFCYCSPDCRNR-------------------------------------------------FPGCRC- 544 (739)
T ss_pred CCcccccCcchhhcccCCHHHHhc-------------------------------------------------CCCCCc-
Confidence 499999999998 89998 77664 369999
Q ss_pred CcccccchhhhhccCCCCC-CCCcc
Q 008269 183 KSGCLKKYCECFQANILCS-ENCRC 206 (571)
Q Consensus 183 KS~CLKkYCECF~agv~Cs-~~CkC 206 (571)
|++|.-+-|.||+|..-|. +-|.+
T Consensus 545 k~QC~tkqCpC~~A~rECdPd~Cl~ 569 (739)
T KOG1079|consen 545 KAQCNTKQCPCYLAVRECDPDVCLM 569 (739)
T ss_pred ccccccCcCchhhhccccCchHHhc
Confidence 9999999999999999998 56665
No 6
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=78.70 E-value=1.7 Score=48.86 Aligned_cols=43 Identities=37% Similarity=0.865 Sum_probs=37.0
Q ss_pred HhhhcCCCcccCCcccccchhhhhccCCCCCC-----CCcc--cCCCCCCC
Q 008269 171 LAAKHNKGCHCKKSGCLKKYCECFQANILCSE-----NCRC--LDCKNFEG 214 (571)
Q Consensus 171 ~~~kH~kGCnCKKS~CLKkYCECF~agv~Cs~-----~CkC--~~CkN~e~ 214 (571)
...+...||.|+ -.|.--.|-|-++||.|.. -|-| .+|-|.++
T Consensus 302 RnSReeCGCsCr-~~CdPETCaCSqaGIkCQvDr~~fPCgC~rEgCgNp~G 351 (640)
T KOG3813|consen 302 RNSREECGCSCR-GVCDPETCACSQAGIKCQVDRGEFPCGCFREGCGNPEG 351 (640)
T ss_pred HhhHHhhCCccc-ceeChhhcchhccCceEeecCcccccccchhhcCCCcc
Confidence 345667899999 8999999999999999974 5888 58999987
No 7
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=61.99 E-value=7.8 Score=33.16 Aligned_cols=38 Identities=39% Similarity=1.035 Sum_probs=21.8
Q ss_pred hcCCCcccCCccc-ccchhhhhccCC--------------------CCCCCCccc-CCCCC
Q 008269 174 KHNKGCHCKKSGC-LKKYCECFQANI--------------------LCSENCRCL-DCKNF 212 (571)
Q Consensus 174 kH~kGCnCKKS~C-LKkYCECF~agv--------------------~Cs~~CkC~-~CkN~ 212 (571)
....||.| ...| ....|+|.+... -|++.|.|. .|.|.
T Consensus 44 ~~~~~C~C-~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 44 EFLQGCDC-SGDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp GGTS-----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred ccCccCcc-CCCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 44679999 4569 789999985553 399999995 78874
No 8
>PF11430 EGL-1: Programmed cell death activator EGL-1; InterPro: IPR021543 Initiation of programmed cell death in C.elegans occurs by the binding of EGL-1 to CED-9 which disrupts a complex involving CED-4/CED-9 and allows CED-4 to activate CED-3, a caspase. It is the C-terminal domain of EGL-1 which is involved in the formation of the complex with CED-9. The formation of the complex induces structural rearrangements in CED-9 and EGL-1 adopts an extended alpha-helical conformation []. ; PDB: 1TY4_D.
Probab=37.07 E-value=4.8 Score=27.67 Aligned_cols=13 Identities=46% Similarity=0.769 Sum_probs=10.3
Q ss_pred hhccccccccccc
Q 008269 420 RALMCDEEDSAFM 432 (571)
Q Consensus 420 ~ALMCDEqD~~F~ 432 (571)
+|-|||+-|.-.|
T Consensus 7 la~MCDdFD~emM 19 (21)
T PF11430_consen 7 LAAMCDDFDAEMM 19 (21)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6889999987544
No 9
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=23.81 E-value=32 Score=40.22 Aligned_cols=21 Identities=38% Similarity=0.839 Sum_probs=17.3
Q ss_pred ccccccCCCCCCCCCCCCCCC
Q 008269 105 YCECFAAGIYCDGCNCVNCHN 125 (571)
Q Consensus 105 YCeCFAaG~yC~~CnC~~C~N 125 (571)
-|.||+|..-|+.=-|..|.|
T Consensus 552 qCpC~~A~rECdPd~Cl~cg~ 572 (739)
T KOG1079|consen 552 QCPCYLAVRECDPDVCLMCGN 572 (739)
T ss_pred cCchhhhccccCchHHhccCc
Confidence 799999999999666666665
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.46 E-value=81 Score=28.23 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=13.0
Q ss_pred HHHHHHHHhHHHHHHHh
Q 008269 331 LCSLLVMVSSEATKTLT 347 (571)
Q Consensus 331 LcslLVvvs~eAakt~a 347 (571)
|+.||+|.|..||..++
T Consensus 13 LA~lLlisSevaa~~~~ 29 (95)
T PF07172_consen 13 LAALLLISSEVAARELE 29 (95)
T ss_pred HHHHHHHHhhhhhHHhh
Confidence 67888888888877773
Done!