Query 008269
Match_columns 571
No_of_seqs 181 out of 434
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 22:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lua_A Protein MALE-specific l 95.8 0.0048 1.6E-07 48.7 2.9 37 176-213 4-47 (52)
2 2lua_A Protein MALE-specific l 91.1 0.13 4.5E-06 40.6 2.9 23 105-127 25-47 (52)
3 3bo5_A Histone-lysine N-methyl 76.7 1.3 4.5E-05 43.9 2.9 38 176-213 59-119 (290)
4 1mvh_A Cryptic LOCI regulator 58.1 5 0.00017 39.9 2.7 39 175-213 65-130 (299)
5 3hna_A Histone-lysine N-methyl 51.5 6.3 0.00021 39.1 2.2 38 175-213 79-140 (287)
6 1ml9_A Histone H3 methyltransf 43.5 15 0.00052 36.2 3.5 22 175-196 46-68 (302)
7 2hv8_D RAB11 family-interactin 42.9 19 0.00066 29.4 3.4 27 452-479 26-52 (64)
8 2d7c_C RAB11 family-interactin 32.6 39 0.0013 25.6 3.4 25 454-479 6-30 (42)
9 2li3_A Potassium channel toxin 25.9 7.8 0.00027 27.5 -1.3 25 184-208 2-30 (30)
10 3h6l_A Histone-lysine N-methyl 22.5 40 0.0014 33.3 2.5 37 176-213 63-110 (278)
No 1
>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster}
Probab=95.84 E-value=0.0048 Score=48.68 Aligned_cols=37 Identities=32% Similarity=0.959 Sum_probs=32.0
Q ss_pred CCCcccCCc-------ccccchhhhhccCCCCCCCCcccCCCCCC
Q 008269 176 NKGCHCKKS-------GCLKKYCECFQANILCSENCRCLDCKNFE 213 (571)
Q Consensus 176 ~kGCnCKKS-------~CLKkYCECF~agv~Cs~~CkC~~CkN~e 213 (571)
.++|.|..+ .|-...|.||.+|..|+ .|+|.+|+|-.
T Consensus 4 k~~CrCG~~~~~~~~~TC~~~RCpCY~~~~sC~-~C~C~GCkNPh 47 (52)
T 2lua_A 4 KPKCRCGISGSSNTLTTCRNSRCPCYKSYNSCA-GCHCVGCKNPH 47 (52)
T ss_dssp CCCCCBTTBSCCCSSSTTTSTTCHHHHTTCCCS-SCCCSSCCCSC
T ss_pred CcccccCcccCCCCceeEcCCccceecCCCccC-CCEecCcCCCC
Confidence 578888444 79999999999999997 79999999964
No 2
>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster}
Probab=91.14 E-value=0.13 Score=40.63 Aligned_cols=23 Identities=39% Similarity=1.109 Sum_probs=21.8
Q ss_pred ccccccCCCCCCCCCCCCCCCCc
Q 008269 105 YCECFAAGIYCDGCNCVNCHNNV 127 (571)
Q Consensus 105 YCeCFAaG~yC~~CnC~~C~N~~ 127 (571)
-|.||-+|.-|.+|+|.+|+|..
T Consensus 25 RCpCY~~~~sC~~C~C~GCkNPh 47 (52)
T 2lua_A 25 RCPCYKSYNSCAGCHCVGCKNPH 47 (52)
T ss_dssp TCHHHHTTCCCSSCCCSSCCCSC
T ss_pred ccceecCCCccCCCEecCcCCCC
Confidence 89999999999999999999974
No 3
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=76.65 E-value=1.3 Score=43.89 Aligned_cols=38 Identities=37% Similarity=0.897 Sum_probs=29.6
Q ss_pred CCCcccCCcccccchhhhhccCC----------------------CCCCCCcc-cCCCCCC
Q 008269 176 NKGCHCKKSGCLKKYCECFQANI----------------------LCSENCRC-LDCKNFE 213 (571)
Q Consensus 176 ~kGCnCKKS~CLKkYCECF~agv----------------------~Cs~~CkC-~~CkN~e 213 (571)
..||+|.+..|...-|.|++.+. -|+..|.| ..|.|..
T Consensus 59 ~~gC~C~~~~C~~~~C~C~~~~~~y~~~~~l~~~~~~~~~~~~~~EC~~~C~C~~~C~Nr~ 119 (290)
T 3bo5_A 59 FPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNVLCRCSDHCRNRV 119 (290)
T ss_dssp CCCCCCCSSCCCTTTCGGGTTSCSBCTTSCBCC-----CCCCCEECCCTTCCSCTTCTTCC
T ss_pred CCCCCCCCCCcCCCCCcchhhcCccCccccccccccccccCCceEeCCCCCCCCCCCCCeE
Confidence 46999999999999999997653 36677888 4687754
No 4
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=58.12 E-value=5 Score=39.89 Aligned_cols=39 Identities=33% Similarity=0.919 Sum_probs=30.8
Q ss_pred cCCCcccCC-ccccc---chhhhhccC----------------------CCCCCCCccc-CCCCCC
Q 008269 175 HNKGCHCKK-SGCLK---KYCECFQAN----------------------ILCSENCRCL-DCKNFE 213 (571)
Q Consensus 175 H~kGCnCKK-S~CLK---kYCECF~ag----------------------v~Cs~~CkC~-~CkN~e 213 (571)
...||+|.. ..|.. .-|+|.+.. .-|++.|.|. .|.|..
T Consensus 65 ~~~gC~C~~~~~C~~~~~~~C~C~~~~~~~~~~~y~~~g~l~~~~~~~i~EC~~~C~C~~~C~Nr~ 130 (299)
T 1mvh_A 65 FQSGCNCSSLGGCDLNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRV 130 (299)
T ss_dssp GCCCCCCCCSSSSCTTCTTTCSSSTTCCSSCCCSBCTTSSBCTTCCSEEECCCTTSCSCTTCTTCT
T ss_pred CCCCCcCcCCCCcCCCCCCCCccccccccccccccCCCCceeecCCCCeEeCCCCCCCCCCcCCcc
Confidence 357999986 68997 789998543 4799999995 798864
No 5
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=51.49 E-value=6.3 Score=39.05 Aligned_cols=38 Identities=32% Similarity=0.794 Sum_probs=29.7
Q ss_pred cCCCcccCCcccccchhhhhcc-----------------------CCCCCCCCccc-CCCCCC
Q 008269 175 HNKGCHCKKSGCLKKYCECFQA-----------------------NILCSENCRCL-DCKNFE 213 (571)
Q Consensus 175 H~kGCnCKKS~CLKkYCECF~a-----------------------gv~Cs~~CkC~-~CkN~e 213 (571)
+..||.|+. .|...-|.|.+. -.-|++.|.|. .|.|..
T Consensus 79 ~~~gC~C~~-~C~~~~C~C~~~~~~~~y~~~g~l~~~~~~~~~~~i~EC~~~C~C~~~C~Nr~ 140 (287)
T 3hna_A 79 HLQYCVCID-DCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRV 140 (287)
T ss_dssp GCCCCCCSS-SSCSTTCHHHHHTSSCCBCTTSCBCTTCCSSSCCCEECCCTTSSSCTTCSSCS
T ss_pred CCCCCcCcC-CCCCCCCcCcccCcccccCCCCcccccccccCCceEEecCCCCCCCCCCCCcc
Confidence 457999984 799889999852 23589999995 798875
No 6
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=43.55 E-value=15 Score=36.24 Aligned_cols=22 Identities=27% Similarity=0.988 Sum_probs=17.2
Q ss_pred cCCCcccCCc-ccccchhhhhcc
Q 008269 175 HNKGCHCKKS-GCLKKYCECFQA 196 (571)
Q Consensus 175 H~kGCnCKKS-~CLKkYCECF~a 196 (571)
...||+|... .|...-|.|.+.
T Consensus 46 ~~~gC~C~~~~~C~~~~C~C~~~ 68 (302)
T 1ml9_A 46 FRVGCSCASDEECMYSTCQCLDE 68 (302)
T ss_dssp GCCCCCCSSTTGGGSTTSGGGTT
T ss_pred cCCCccCcCCCCcCCCCCcChhh
Confidence 3579999874 798888999753
No 7
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=42.92 E-value=19 Score=29.37 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=22.4
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHHHhh
Q 008269 452 YASTRIYAEQERLILTRFRDFLNRLITC 479 (571)
Q Consensus 452 q~~sel~aeQEr~VLT~FRD~L~~lIt~ 479 (571)
.+.-+.+.+||. +...+|||+.+|+.+
T Consensus 26 deL~~~l~eqee-~n~~Le~YID~LL~~ 52 (64)
T 2hv8_D 26 DELMEAIQKQEE-INFRLQDYIDRIIVA 52 (64)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 456677889998 789999999999864
No 8
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=32.60 E-value=39 Score=25.58 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhh
Q 008269 454 STRIYAEQERLILTRFRDFLNRLITC 479 (571)
Q Consensus 454 ~sel~aeQEr~VLT~FRD~L~~lIt~ 479 (571)
.-++..+||. +...+|||+..|+-+
T Consensus 6 L~~~l~~qee-~n~~Le~YID~LL~~ 30 (42)
T 2d7c_C 6 LMEAIQKQEE-INFRLQDYIDRIIVA 30 (42)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3455678888 779999999998753
No 9
>2li3_A Potassium channel toxin kappa-KTX3.1; alpha/alpha motif, alpha scorpion toxin, voltage gated potas channel alpha toxin; NMR {Tityus trivittatus} PDB: 2lka_A 2lo7_A
Probab=25.88 E-value=7.8 Score=27.47 Aligned_cols=25 Identities=40% Similarity=1.043 Sum_probs=19.2
Q ss_pred cccccchhhhhccCC----CCCCCCcccC
Q 008269 184 SGCLKKYCECFQANI----LCSENCRCLD 208 (571)
Q Consensus 184 S~CLKkYCECF~agv----~Cs~~CkC~~ 208 (571)
|+|.+-||.-.-.++ +|-.+|+|+.
T Consensus 2 sgc~peyca~~cr~kvsq~yclknckc~~ 30 (30)
T 2li3_A 2 SGCMPEYCAGQCRGKVSQDYCLKNCRCIR 30 (30)
T ss_dssp CSSCHHHHHHHSCTTHHHHHHHHHSCCCC
T ss_pred CCcchhHhhhheeeeechHHHHhcCcCCC
Confidence 689999998765444 7888999974
No 10
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=22.54 E-value=40 Score=33.27 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=29.3
Q ss_pred CCCcccCCc----------ccccchhhhhccCCCCCCCCcc-cCCCCCC
Q 008269 176 NKGCHCKKS----------GCLKKYCECFQANILCSENCRC-LDCKNFE 213 (571)
Q Consensus 176 ~kGCnCKKS----------~CLKkYCECF~agv~Cs~~CkC-~~CkN~e 213 (571)
..-|.|+.. .|-. -|.+...-.-|++.|.| ..|.|..
T Consensus 63 ~~~C~C~~~~~~~~~~~~~~C~~-~C~nr~~~~EC~~~C~C~~~C~Nr~ 110 (278)
T 3h6l_A 63 RMQCECTPLSKDERAQGEIACGE-DCLNRLLMIECSSRCPNGDYCSNRR 110 (278)
T ss_dssp --CCCCCCCCHHHHHHTCCSSCT-TCTTGGGTBCCCTTCTTGGGCSSCT
T ss_pred cceeeccCCCcccccccCCCCCC-CCCCcceEeccCCCCCcCCCCCCcc
Confidence 357999863 7876 58899999999999999 5799975
Done!